Psyllid ID: psy5845

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MHWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEcccccccccEEEccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccEHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHcccEEEEcccEcccccccEccEEEEccccccHHHHcc
Coil and Loop (DISEMBL)
mhwtsaavftkdldktnyvtqglragtiwgrkIDKEQMDKILEFIESGKSQGAQLVagggragdkgfyvqptvfanvrDDMKIAREE
Flexible Loop (DISEMBL)
mhwtsaavftkdldktnyvtqglragtiwgrkiDKEQMDKILEFIESGKSQGAQLVAGGGRagdkgfyvqptvfanvrddmKIAREE
Low Complexity Region (SEG)
MHWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE
Disordered region (IsUnstruct)
****SAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESG***GAQLVAGGGRAGDKGFYVQPTVFANV**********
Disordered Region (DISOPRED)
MHWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIARE*
Disordered Region (DISEMBL)
MHWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE
Disordered Region (DISPRO)
*HWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKI****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
P51647	501	Retinal dehydrogenase 1 O	yes	N/A	0.770	0.133	0.619	3e-18
P86886	500	Retinal dehydrogenase 1 O	N/A	N/A	0.747	0.13	0.646	5e-18
P24549	501	Retinal dehydrogenase 1 O	yes	N/A	0.747	0.129	0.646	9e-18
O35945	501	Aldehyde dehydrogenase, c	no	N/A	0.747	0.129	0.630	5e-17
Q8HYE4	501	Retinal dehydrogenase 1 O	N/A	N/A	0.747	0.129	0.615	6e-17
P00352	501	Retinal dehydrogenase 1 O	yes	N/A	0.747	0.129	0.615	6e-17
P13601	501	Aldehyde dehydrogenase, c	no	N/A	0.747	0.129	0.630	6e-17
P15437	500	Retinal dehydrogenase 1 O	yes	N/A	0.747	0.13	0.6	1e-16
P27463	509	Retinal dehydrogenase 1 O	yes	N/A	0.747	0.127	0.6	3e-16
Q29491	240	Aldehyde dehydrogenase, c	N/A	N/A	0.747	0.270	0.584	3e-16

>sp|P51647|AL1A1_RAT Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 4/71 (5%)

Query: 17  NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFAN 76
           N +TQG+  G     +IDKEQ DKIL+ IESGK +GA+L  GGGR G+KGF+VQPTVF+N
Sbjct: 334 NPLTQGINQGP----QIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSN 389

Query: 77  VRDDMKIAREE 87
           V D+M+IA+EE
Sbjct: 390 VTDEMRIAKEE 400

Is capable of converting 9-cis and all-trans retinal to corresponding retinoic acid with high efficiency, 9-cis retinal being 2-fold more active than all-trans retinal.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 3EC: 6

>sp|P86886|AL1A1_MESAU Retinal dehydrogenase 1 OS=Mesocricetus auratus GN=ALDH1A1 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 53/65 (81%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L +G   G +IDKEQ DKIL+ IESGK +GA+L  GGGR G+KG++VQPTVF+NV DDM+
Sbjct: 335 LNSGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGYFVQPTVFSNVTDDMR 394

Query: 83  IAREE 87
           IA+EE
Sbjct: 395 IAKEE 399

Binds free retinal and cellular retinol-binding protein-bound retinal. Can convert/oxidize retinaldehyde to retinoic acid.

Mesocricetus auratus (taxid: 10036)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|P24549|AL1A1_MOUSE Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5

 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 52/65 (80%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  G   G +IDKEQ DKIL+ IESGK +GA+L  GGGR G+KGF+VQPTVF+NV D+M+
Sbjct: 336 LTPGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMR 395

Query: 83  IAREE 87
           IA+EE
Sbjct: 396 IAKEE 400

In addition to the activity on acetaldehyde and related substrates, is also involved in the oxidation of aldehydes derived from biogenic amines such as epinephrine and norepinephrine, as well as the aldehydes generated via lipid peroxidation. Binds free retinal and cellular retinol-binding protein-bound retinal. Can convert/oxidize retinaldehyde to retinoic acid.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|O35945|AL1A7_MOUSE Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 52/65 (80%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L +G   G +IDKEQ +KIL  IESGK +GA+L  GGGR G+KGF+VQPTVF+NV D+M+
Sbjct: 336 LNSGINQGPQIDKEQHNKILGLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMR 395

Query: 83  IAREE 87
           IA+EE
Sbjct: 396 IAKEE 400

Can oxidize benzaldehyde, propionaldehyde and acetaldehyde (By similarity). No detectable activity with retinal.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8HYE4|AL1A1_MACFA Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 51/65 (78%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  G   G +IDKEQ DKIL+ IESGK +GA+L  GGG  G+KG++VQPTVF+NV D+M+
Sbjct: 336 LTPGATQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMR 395

Query: 83  IAREE 87
           IA+EE
Sbjct: 396 IAKEE 400

Binds free retinal and cellular retinol-binding protein-bound retinal. Can convert/oxidize retinaldehyde to retinoic acid.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|P00352|AL1A1_HUMAN Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 51/65 (78%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  G   G +IDKEQ DKIL+ IESGK +GA+L  GGG  G+KG++VQPTVF+NV D+M+
Sbjct: 336 LTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMR 395

Query: 83  IAREE 87
           IA+EE
Sbjct: 396 IAKEE 400

Binds free retinal and cellular retinol-binding protein-bound retinal. Can convert/oxidize retinaldehyde to retinoic acid.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|P13601|AL1A7_RAT Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/65 (63%), Positives = 52/65 (80%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L +G   G +IDKEQ  KIL+ IESGK +GA+L  GGGR G+KGF+VQPTVF+NV D+M+
Sbjct: 336 LDSGISQGPQIDKEQHAKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMR 395

Query: 83  IAREE 87
           IA+EE
Sbjct: 396 IAKEE 400

Can oxidize benzaldehyde, propionaldehyde and acetaldehyde. No detectable activity with retinal.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P15437|AL1A1_HORSE Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  G   G +IDKEQ DKIL+ IESGK +GA+L  GGG  G+KG+++QPTVF+NV D+M+
Sbjct: 335 LTPGVSQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVSDEMR 394

Query: 83  IAREE 87
           IA+EE
Sbjct: 395 IAKEE 399

Binds free retinal and cellular retinol-binding protein-bound retinal. Can convert/oxidize retinaldehyde to retinoic acid.

Equus caballus (taxid: 9796)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|P27463|AL1A1_CHICK Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 50/65 (76%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  G   G +IDKEQ  KIL+ IESGK +GA+L  GGG  G+KG+++QPTVF+NV DDM+
Sbjct: 344 LLPGVQQGPQIDKEQFQKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDDMR 403

Query: 83  IAREE 87
           IA+EE
Sbjct: 404 IAKEE 408

Binds free retinal and cellular retinol-binding protein-bound retinal. Can convert/oxidize retinaldehyde to retinoic acid.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q29491|ALDH2_MACPR Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=Macroscelides proboscideus PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 51/65 (78%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  G   G +IDKEQ DKI++ IESGK +GA+L  GGG  G+KG+++QPTVF+NV D+M+
Sbjct: 75  LTPGVSQGPQIDKEQYDKIIDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDEMR 134

Query: 83  IAREE 87
           IA+EE
Sbjct: 135 IAKEE 139

Elephant shrews, in contrast to other mammals, possess both a lens- and a non-lens specific class-1 aldehyde dehydrogenase. Can convert/oxidize retinaldehyde to retinoic acid.

Macroscelides proboscideus (taxid: 29082)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
974168	501	aldehyde dehydrogenase [Rattus norvegicu	0.770	0.133	0.619	1e-16
14192935	501	retinal dehydrogenase 1 [Rattus norvegic	0.770	0.133	0.619	1e-16
291229091	452	PREDICTED: mitochondrial aldehyde dehydr	0.666	0.128	0.655	1e-16
164450344	204	aldehyde dehydrogenase [Ectropis obliqua	0.977	0.416	0.477	1e-16
220067263	496	retinal dehydrogenase [Lymnaea stagnalis	0.896	0.157	0.525	2e-16
325529941	500	RecName: Full=Retinal dehydrogenase 1; S	0.747	0.13	0.646	2e-16
28386049	511	Aldh1a1 protein [Mus musculus]	0.747	0.127	0.646	4e-16
85861182	501	retinal dehydrogenase 1 [Mus musculus] g	0.747	0.129	0.646	4e-16
191804	501	aldehyde dehydrogenase II [Mus musculus]	0.747	0.129	0.646	4e-16
9755362	501	acetaldehyde dehydrogenase [Mus musculus	0.747	0.129	0.646	4e-16

>gi|974168|gb|AAA96657.1| aldehyde dehydrogenase [Rattus norvegicus]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 4/71 (5%)

Query: 17  NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFAN 76
           N +TQG+  G     +IDKEQ DKIL+ IESGK +GA+L  GGGR G+KGF+VQPTVF+N
Sbjct: 334 NPLTQGINQGP----QIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSN 389

Query: 77  VRDDMKIAREE 87
           V D+M+IA+EE
Sbjct: 390 VTDEMRIAKEE 400

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|14192935|ref|NP_071852.2| retinal dehydrogenase 1 [Rattus norvegicus] gi|14424442|sp|P51647.3|AL1A1_RAT RecName: Full=Retinal dehydrogenase 1; Short=RALDH 1; Short=RalDH1; AltName: Full=ALDH-E1; AltName: Full=ALHDII; AltName: Full=Aldehyde dehydrogenase family 1 member A1; AltName: Full=Aldehyde dehydrogenase, cytosolic gi|1916794|gb|AAB63423.1| aldehyde dehydrogenase [Rattus norvegicus] gi|2183213|gb|AAC53304.1| aldehyde dehydrogenase [Rattus norvegicus] gi|2183215|gb|AAC53305.1| aldehyde dehydrogenase [Rattus norvegicus] gi|2183217|gb|AAC53306.1| aldehyde dehydrogenase [Rattus norvegicus] gi|38494348|gb|AAH61526.1| Aldehyde dehydrogenase 1 family, member A1 [Rattus norvegicus] gi|149062571|gb|EDM12994.1| rCG47846 [Rattus norvegicus]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 56/71 (78%), Gaps = 4/71 (5%)

Query: 17  NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFAN 76
           N +TQG+  G     +IDKEQ DKIL+ IESGK +GA+L  GGGR G+KGF+VQPTVF+N
Sbjct: 334 NPLTQGINQGP----QIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSN 389

Query: 77  VRDDMKIAREE 87
           V D+M+IA+EE
Sbjct: 390 VTDEMRIAKEE 400

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291229091|ref|XP_002734509.1| PREDICTED: mitochondrial aldehyde dehydrogenase 2-like [Saccoglossus kowalevskii]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/58 (65%), Positives = 53/58 (91%)

Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           G ++D+EQM+KILE IESGK++GA+L+ GG R GDKGF++QPTVFA+V+D+M+IA+EE
Sbjct: 294 GPQVDEEQMNKILELIESGKAEGAKLMCGGARHGDKGFFIQPTVFADVKDNMRIAKEE 351

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|164450344|gb|ABY56618.1| aldehyde dehydrogenase [Ectropis obliqua]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 63/90 (70%), Gaps = 5/90 (5%)

Query: 3   WTSAAVFTKDLDKTNYVTQGLRAGTIW-----GRKIDKEQMDKILEFIESGKSQGAQLVA 57
           +  + ++ K + K+  + Q    G  +     G +IDKE  DK++ FI++GK+QGA+ +A
Sbjct: 76  FVQSGIYDKFVAKSAEIAQKRSVGNPYEDVEQGPQIDKEMFDKVMGFIDAGKTQGARCIA 135

Query: 58  GGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           GGGR G+ GF+VQPTVFA+V+DDMKIAREE
Sbjct: 136 GGGRQGNVGFFVQPTVFADVKDDMKIAREE 165

Source: Ectropis obliqua

Species: Ectropis obliqua

Genus: Ectropis

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|220067263|gb|ACL79834.1| retinal dehydrogenase [Lymnaea stagnalis]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 59/78 (75%)

Query: 10  TKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYV 69
           T++L KT  +     + T+ G +ID+EQ++KILE IESGK +GA++  GG R GD+GF++
Sbjct: 318 TRELAKTRKIGDPFDSNTVNGPQIDQEQLNKILELIESGKKEGAKVEHGGERHGDQGFFI 377

Query: 70  QPTVFANVRDDMKIAREE 87
            PTVF+NV DDM+IA+EE
Sbjct: 378 TPTVFSNVTDDMRIAKEE 395

Source: Lymnaea stagnalis

Species: Lymnaea stagnalis

Genus: Lymnaea

Family: Lymnaeidae

Class: Gastropoda

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|325529941|sp|P86886.1|AL1A1_MESAU RecName: Full=Retinal dehydrogenase 1; Short=RALDH 1; Short=RalDH1; AltName: Full=ALDH-E1; AltName: Full=ALHDII; AltName: Full=Aldehyde dehydrogenase family 1 member A1; AltName: Full=Aldehyde dehydrogenase, cytosolic

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 53/65 (81%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L +G   G +IDKEQ DKIL+ IESGK +GA+L  GGGR G+KG++VQPTVF+NV DDM+
Sbjct: 335 LNSGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGYFVQPTVFSNVTDDMR 394

Query: 83  IAREE 87
           IA+EE
Sbjct: 395 IAKEE 399

Source: Mesocricetus auratus

Species: Mesocricetus auratus

Genus: Mesocricetus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|28386049|gb|AAH44729.1| Aldh1a1 protein [Mus musculus]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 52/65 (80%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  G   G +IDKEQ DKIL+ IESGK +GA+L  GGGR G+KGF+VQPTVF+NV D+M+
Sbjct: 346 LTPGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMR 405

Query: 83  IAREE 87
           IA+EE
Sbjct: 406 IAKEE 410

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|85861182|ref|NP_038495.2| retinal dehydrogenase 1 [Mus musculus] gi|42560536|sp|P24549.5|AL1A1_MOUSE RecName: Full=Retinal dehydrogenase 1; Short=RALDH 1; Short=RalDH1; AltName: Full=ALDH-E1; AltName: Full=ALHDII; AltName: Full=Aldehyde dehydrogenase family 1 member A1; AltName: Full=Aldehyde dehydrogenase, cytosolic gi|32484332|gb|AAH54386.1| Aldehyde dehydrogenase family 1, subfamily A1 [Mus musculus] gi|148709631|gb|EDL41577.1| mCG119957 [Mus musculus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 52/65 (80%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  G   G +IDKEQ DKIL+ IESGK +GA+L  GGGR G+KGF+VQPTVF+NV D+M+
Sbjct: 336 LTPGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMR 395

Query: 83  IAREE 87
           IA+EE
Sbjct: 396 IAKEE 400

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|191804|gb|AAA37202.1| aldehyde dehydrogenase II [Mus musculus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 52/65 (80%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  G   G +IDKEQ DKIL+ IESGK +GA+L  GGGR G+KGF+VQPTVF+NV D+M+
Sbjct: 336 LTPGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMR 395

Query: 83  IAREE 87
           IA+EE
Sbjct: 396 IAKEE 400

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|9755362|gb|AAB32754.2| acetaldehyde dehydrogenase [Mus musculus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 52/65 (80%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  G   G +IDKEQ DKIL+ IESGK +GA+L  GGGR G+KGF+VQPTVF+NV D+M+
Sbjct: 336 LTPGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMR 395

Query: 83  IAREE 87
           IA+EE
Sbjct: 396 IAKEE 400

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
RGD|2087	501	Aldh1a1 "aldehyde dehydrogenas	0.770	0.133	0.619	3.6e-17
MGI|MGI:1353450	501	Aldh1a1 "aldehyde dehydrogenas	0.747	0.129	0.646	1.3e-16
UNIPROTKB|P00352	501	ALDH1A1 "Retinal dehydrogenase	0.747	0.129	0.615	5.6e-16
MGI|MGI:1347050	501	Aldh1a7 "aldehyde dehydrogenas	0.747	0.129	0.630	5.6e-16
RGD|620252	501	Aldh1a7 "aldehyde dehydrogenas	0.747	0.129	0.630	5.6e-16
UNIPROTKB|F1NJP8	445	ALDH1A1 "Retinal dehydrogenase	0.885	0.173	0.518	7e-16
UNIPROTKB|F1NJC7	507	ALDH1A1 "Retinal dehydrogenase	0.885	0.151	0.518	9.6e-16
UNIPROTKB|P27463	509	ALDH1A1 "Retinal dehydrogenase	0.885	0.151	0.518	9.7e-16
UNIPROTKB|J9P9J4	484	ALDH1A1 "Uncharacterized prote	0.747	0.134	0.584	3e-15
UNIPROTKB|E2RMX7	496	ALDH1A1 "Uncharacterized prote	0.747	0.131	0.584	3.2e-15

RGD|2087 Aldh1a1 "aldehyde dehydrogenase 1 family, member A1" [Rattus norvegicus (taxid:10116)]

 Score = 218 (81.8 bits), Expect = 3.6e-17, P = 3.6e-17
 Identities = 44/71 (61%), Positives = 56/71 (78%)

Query:    17 NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFAN 76
             N +TQG+  G     +IDKEQ DKIL+ IESGK +GA+L  GGGR G+KGF+VQPTVF+N
Sbjct:   334 NPLTQGINQGP----QIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSN 389

Query:    77 VRDDMKIAREE 87
             V D+M+IA+EE
Sbjct:   390 VTDEMRIAKEE 400

GO:0001758 "retinal dehydrogenase activity" evidence=IMP;IDA

GO:0001822 "kidney development" evidence=IEP

GO:0001889 "liver development" evidence=IEP

GO:0002072 "optic cup morphogenesis involved in camera-type eye development" evidence=IEA;ISO

GO:0002138 "retinoic acid biosynthetic process" evidence=IMP

GO:0004028 "3-chloroallyl aldehyde dehydrogenase activity" evidence=ISO;TAS

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=ISO;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0007494 "midgut development" evidence=IEP

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0018479 "benzaldehyde dehydrogenase (NAD+) activity" evidence=IDA

GO:0032355 "response to estradiol stimulus" evidence=IEP

GO:0032526 "response to retinoic acid" evidence=IEP

GO:0042493 "response to drug" evidence=IEP;ISO

GO:0042572 "retinol metabolic process" evidence=IEA;ISO

GO:0042573 "retinoic acid metabolic process" evidence=ISO

GO:0042802 "identical protein binding" evidence=IDA

GO:0042904 "9-cis-retinoic acid biosynthetic process" evidence=IEA;ISO

GO:0042905 "9-cis-retinoic acid metabolic process" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA;ISO

GO:0045471 "response to ethanol" evidence=IDA

GO:0048048 "embryonic eye morphogenesis" evidence=ISO

GO:0051289 "protein homotetramerization" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0060206 "estrous cycle phase" evidence=IEP

MGI|MGI:1353450 Aldh1a1 "aldehyde dehydrogenase family 1, subfamily A1" [Mus musculus (taxid:10090)]

 Score = 213 (80.0 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 42/65 (64%), Positives = 52/65 (80%)

Query:    23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
             L  G   G +IDKEQ DKIL+ IESGK +GA+L  GGGR G+KGF+VQPTVF+NV D+M+
Sbjct:   336 LTPGINQGPQIDKEQHDKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMR 395

Query:    83 IAREE 87
             IA+EE
Sbjct:   396 IAKEE 400

GO:0001758 "retinal dehydrogenase activity" evidence=ISO

GO:0002072 "optic cup morphogenesis involved in camera-type eye development" evidence=IGI

GO:0002138 "retinoic acid biosynthetic process" evidence=ISO

GO:0004028 "3-chloroallyl aldehyde dehydrogenase activity" evidence=IDA

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0018479 "benzaldehyde dehydrogenase (NAD+) activity" evidence=ISO

GO:0042493 "response to drug" evidence=IDA

GO:0042572 "retinol metabolic process" evidence=IMP

GO:0042573 "retinoic acid metabolic process" evidence=IGI;IMP;IDA

GO:0042802 "identical protein binding" evidence=ISO

GO:0042904 "9-cis-retinoic acid biosynthetic process" evidence=IDA

GO:0042905 "9-cis-retinoic acid metabolic process" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=IGI

GO:0045471 "response to ethanol" evidence=ISO

GO:0048048 "embryonic eye morphogenesis" evidence=IGI

GO:0051289 "protein homotetramerization" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO;IDA

UNIPROTKB|P00352 ALDH1A1 "Retinal dehydrogenase 1" [Homo sapiens (taxid:9606)]

 Score = 207 (77.9 bits), Expect = 5.6e-16, P = 5.6e-16
 Identities = 40/65 (61%), Positives = 51/65 (78%)

Query:    23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
             L  G   G +IDKEQ DKIL+ IESGK +GA+L  GGG  G+KG++VQPTVF+NV D+M+
Sbjct:   336 LTPGVTQGPQIDKEQYDKILDLIESGKKEGAKLECGGGPWGNKGYFVQPTVFSNVTDEMR 395

Query:    83 IAREE 87
             IA+EE
Sbjct:   396 IAKEE 400

GO:0001758 "retinal dehydrogenase activity" evidence=IEA

GO:0005099 "Ras GTPase activator activity" evidence=TAS

GO:0042572 "retinol metabolic process" evidence=IEA

GO:0005497 "androgen binding" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006081 "cellular aldehyde metabolic process" evidence=TAS

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=EXP

GO:0005829 "cytosol" evidence=TAS

GO:0006069 "ethanol oxidation" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0032320 "positive regulation of Ras GTPase activity" evidence=TAS

MGI|MGI:1347050 Aldh1a7 "aldehyde dehydrogenase family 1, subfamily A7" [Mus musculus (taxid:10090)]

 Score = 207 (77.9 bits), Expect = 5.6e-16, P = 5.6e-16
 Identities = 41/65 (63%), Positives = 52/65 (80%)

Query:    23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
             L +G   G +IDKEQ +KIL  IESGK +GA+L  GGGR G+KGF+VQPTVF+NV D+M+
Sbjct:   336 LNSGINQGPQIDKEQHNKILGLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMR 395

Query:    83 IAREE 87
             IA+EE
Sbjct:   396 IAKEE 400

GO:0004028 "3-chloroallyl aldehyde dehydrogenase activity" evidence=ISO

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0018479 "benzaldehyde dehydrogenase (NAD+) activity" evidence=ISO

GO:0042573 "retinoic acid metabolic process" evidence=IDA

GO:0042802 "identical protein binding" evidence=ISO

GO:0051289 "protein homotetramerization" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

RGD|620252 Aldh1a7 "aldehyde dehydrogenase family 1, subfamily A7" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 5.6e-16, P = 5.6e-16
 Identities = 41/65 (63%), Positives = 52/65 (80%)

Query:    23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
             L +G   G +IDKEQ  KIL+ IESGK +GA+L  GGGR G+KGF+VQPTVF+NV D+M+
Sbjct:   336 LDSGISQGPQIDKEQHAKILDLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMR 395

Query:    83 IAREE 87
             IA+EE
Sbjct:   396 IAKEE 400

GO:0004028 "3-chloroallyl aldehyde dehydrogenase activity" evidence=IDA;TAS

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=IDA

GO:0005829 "cytosol" evidence=NAS

GO:0006068 "ethanol catabolic process" evidence=IEA

GO:0018479 "benzaldehyde dehydrogenase (NAD+) activity" evidence=IDA

GO:0035106 "operant conditioning" evidence=IEP

GO:0042802 "identical protein binding" evidence=IDA

GO:0051289 "protein homotetramerization" evidence=IDA

GO:0042573 "retinoic acid metabolic process" evidence=ISO

UNIPROTKB|F1NJP8 ALDH1A1 "Retinal dehydrogenase 1" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 7.0e-16, P = 7.0e-16
 Identities = 41/79 (51%), Positives = 56/79 (70%)

Query:    11 KDLDKTNYVTQG--LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFY 68
             + +++    T G  L  G   G +IDKEQ  KIL+ IESGK +GA+L  GGG  G+KG++
Sbjct:   266 RSIERAKKYTLGDPLLPGVQQGPQIDKEQFQKILDLIESGKKEGAKLECGGGPWGNKGYF 325

Query:    69 VQPTVFANVRDDMKIAREE 87
             +QPTVF+NV DDM+IA+EE
Sbjct:   326 IQPTVFSNVTDDMRIAKEE 344

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

UNIPROTKB|F1NJC7 ALDH1A1 "Retinal dehydrogenase 1" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 9.6e-16, P = 9.6e-16
 Identities = 41/79 (51%), Positives = 56/79 (70%)

Query:    11 KDLDKTNYVTQG--LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFY 68
             + +++    T G  L  G   G +IDKEQ  KIL+ IESGK +GA+L  GGG  G+KG++
Sbjct:   328 RSIERAKKYTLGDPLLPGVQQGPQIDKEQFQKILDLIESGKKEGAKLECGGGPWGNKGYF 387

Query:    69 VQPTVFANVRDDMKIAREE 87
             +QPTVF+NV DDM+IA+EE
Sbjct:   388 IQPTVFSNVTDDMRIAKEE 406

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=IEA

UNIPROTKB|P27463 ALDH1A1 "Retinal dehydrogenase 1" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 9.7e-16, P = 9.7e-16
 Identities = 41/79 (51%), Positives = 56/79 (70%)

Query:    11 KDLDKTNYVTQG--LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFY 68
             + +++    T G  L  G   G +IDKEQ  KIL+ IESGK +GA+L  GGG  G+KG++
Sbjct:   330 RSIERAKKYTLGDPLLPGVQQGPQIDKEQFQKILDLIESGKKEGAKLECGGGPWGNKGYF 389

Query:    69 VQPTVFANVRDDMKIAREE 87
             +QPTVF+NV DDM+IA+EE
Sbjct:   390 IQPTVFSNVTDDMRIAKEE 408

GO:0001758 "retinal dehydrogenase activity" evidence=IEA

GO:0042572 "retinol metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|J9P9J4 ALDH1A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 200 (75.5 bits), Expect = 3.0e-15, P = 3.0e-15
 Identities = 38/65 (58%), Positives = 51/65 (78%)

Query:    23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
             L  G   G +IDK+Q +KIL+ IESGK +GA+L  GGG  G+KGF++QPTVF+NV D+M+
Sbjct:   336 LTPGVSQGPQIDKKQYEKILDLIESGKKEGAKLECGGGPWGNKGFFIQPTVFSNVTDEMR 395

Query:    83 IAREE 87
             IA+EE
Sbjct:   396 IAKEE 400

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

UNIPROTKB|E2RMX7 ALDH1A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 200 (75.5 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 38/65 (58%), Positives = 51/65 (78%)

Query:    23 LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
             L  G   G +IDK+Q +KIL+ IESGK +GA+L  GGG  G+KGF++QPTVF+NV D+M+
Sbjct:   331 LTPGVSQGPQIDKKQYEKILDLIESGKKEGAKLECGGGPWGNKGFFIQPTVFSNVTDEMR 390

Query:    83 IAREE 87
             IA+EE
Sbjct:   391 IAKEE 395

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51647	AL1A1_RAT	1, ., 2, ., 1, ., 3, 6	0.6197	0.7701	0.1337	yes	N/A
B1K708	BETB_BURCC	1, ., 2, ., 1, ., 8	0.5522	0.7241	0.1288	yes	N/A
Q1BQE1	BETB_BURCA	1, ., 2, ., 1, ., 8	0.5522	0.7241	0.1288	yes	N/A
B2JS88	BETB_BURP8	1, ., 2, ., 1, ., 8	0.6	0.7011	0.1247	yes	N/A
P00352	AL1A1_HUMAN	1, ., 2, ., 1, ., 3, 6	0.6153	0.7471	0.1297	yes	N/A
P15437	AL1A1_HORSE	1, ., 2, ., 1, ., 3, 6	0.6	0.7471	0.13	yes	N/A
Q56YU0	AL2C4_ARATH	1, ., 2, ., 1, ., 3	0.5344	0.6666	0.1157	yes	N/A
P48644	AL1A1_BOVIN	1, ., 2, ., 1, ., 3, 6	0.5846	0.7471	0.1297	yes	N/A
Q8MI17	AL1A1_RABIT	1, ., 2, ., 1, ., 3, 6	0.6206	0.6666	0.1169	yes	N/A
A0B2F6	BETB_BURCH	1, ., 2, ., 1, ., 8	0.5522	0.7241	0.1288	yes	N/A
P24549	AL1A1_MOUSE	1, ., 2, ., 1, ., 3, 6	0.6461	0.7471	0.1297	yes	N/A
Q39A43	BETB_BURS3	1, ., 2, ., 1, ., 8	0.5522	0.7241	0.1288	yes	N/A
Q0B712	BETB_BURCM	1, ., 2, ., 1, ., 8	0.5373	0.7241	0.1288	yes	N/A
P27463	AL1A1_CHICK	1, ., 2, ., 1, ., 3, 6	0.6	0.7471	0.1277	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	87
cd07141	481	cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retin	7e-30
cd07091	476	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH	2e-27
cd07142	476	cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogen	2e-23
PLN02466	538	PLN02466, PLN02466, aldehyde dehydrogenase family	2e-23
PRK13252	488	PRK13252, PRK13252, betaine aldehyde dehydrogenase	3e-22
pfam00171	459	pfam00171, Aldedh, Aldehyde dehydrogenase family	3e-22
cd07112	462	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+	1e-20
PLN02766	501	PLN02766, PLN02766, coniferyl-aldehyde dehydrogena	3e-20
cd07139	471	cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculo	6e-20
cd07097	473	cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+	9e-20
cd07089	459	cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-	1e-19
cd07107	456	cd07107, ALDH_PhdK-like, Nocardioides 2-carboxyben	2e-18
cd07143	481	cd07143, ALDH_AldA_AN0554, Aspergillus nidulans al	2e-18
cd07078	432	cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrog	3e-18
cd07559	480	cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophu	4e-18
cd07138	466	cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-ox	8e-18
cd07115	453	cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens	1e-17
TIGR01804	467	TIGR01804, BADH, glycine betaine aldehyde dehydrog	2e-17
cd07119	482	cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-de	2e-17
cd07144	484	cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisi	5e-17
cd07118	454	cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbos	1e-16
cd07090	457	cd07090, ALDH_F9_TMBADH, NAD+-dependent 4-trimethy	2e-16
cd07117	475	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylo	2e-16
cd07114	457	cd07114, ALDH_DhaS, Uncharacterized Candidatus pel	3e-16
cd07103	451	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succina	5e-16
cd07086	478	cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha	8e-16
PLN02467	503	PLN02467, PLN02467, betaine aldehyde dehydrogenase	1e-15
PRK03137	514	PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehy	1e-15
COG1012	472	COG1012, PutA, NAD-dependent aldehyde dehydrogenas	2e-15
cd07110	456	cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehy	4e-15
cd07131	478	cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candi	7e-15
cd07093	455	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogen	8e-15
cd07106	446	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofac	5e-14
cd07109	454	cd07109, ALDH_AAS00426, Uncharacterized Saccharopo	1e-13
cd07140	486	cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate	1e-13
cd07124	512	cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-	1e-13
cd07104	431	cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)	1e-13
cd07088	468	cd07088, ALDH_LactADH-AldA, Escherichia coli lacta	2e-12
cd07151	465	cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxyb	4e-12
cd07085	478	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyd	1e-11
TIGR04284	480	TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase,	1e-11
cd07116	479	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD	3e-11
cd07150	451	cd07150, ALDH_VaniDH_like, Pseudomonas putida vani	3e-11
cd07092	450	cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-d	6e-11
PLN02278	498	PLN02278, PLN02278, succinic semialdehyde dehydrog	7e-11
cd07099	453	cd07099, ALDH_DDALDH, Methylomonas sp	9e-11
cd07098	465	cd07098, ALDH_F15-22, Aldehyde dehydrogenase famil	2e-10
TIGR01237	511	TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carb	2e-10
TIGR01780	448	TIGR01780, SSADH, succinate-semialdehyde dehydroge	2e-10
PRK13473	475	PRK13473, PRK13473, gamma-aminobutyraldehyde dehyd	9e-10
cd07149	453	cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) wi	1e-09
cd07100	429	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tubercul	1e-09
cd07108	457	cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-d	2e-09
cd07082	473	cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-ph	2e-09
PRK11241	482	PRK11241, gabD, succinate-semialdehyde dehydrogena	4e-09
TIGR02299	488	TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate	4e-09
PRK10090	409	PRK10090, PRK10090, aldehyde dehydrogenase A; Prov	7e-09
cd07113	477	cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dep	2e-08
cd07130	474	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-amin	2e-08
TIGR03216	481	TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semia	1e-07
cd07111	480	cd07111, ALDH_F16, Aldehyde dehydrogenase family 1	1e-07
cd07141	481	cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retin	2e-07
cd07083	500	cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent	2e-07
cd07152	443	cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde	2e-07
cd07123	522	cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-ca	4e-07
cd07105	432	cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogena	4e-07
cd07145	456	cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcu	6e-07
PRK09407	524	PRK09407, gabD2, succinic semialdehyde dehydrogena	6e-07
cd07147	452	cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase f	2e-06
cd07134	433	cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehy	2e-06
cd07101	454	cd07101, ALDH_SSADH2_GabD2, Mycobacterium tubercul	4e-06
TIGR01722	477	TIGR01722, MMSDH, methylmalonic acid semialdehyde	6e-06
cd07102	452	cd07102, ALDH_EDX86601, Uncharacterized aldehyde d	7e-06
PRK09847	494	PRK09847, PRK09847, gamma-glutamyl-gamma-aminobuty	1e-05
cd07148	455	cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL031	2e-05
cd07120	455	cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida al	5e-05
PRK09406	457	PRK09406, gabD1, succinic semialdehyde dehydrogena	5e-05
cd07087	426	cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily:	6e-05
cd07091	476	cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH	1e-04
cd07136	449	cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldeh	1e-04
TIGR01236	532	TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carb	1e-04
cd07142	476	cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogen	2e-04
cd07119	482	cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-de	2e-04
cd07132	443	cd07132, ALDH_F3AB, Aldehyde dehydrogenase family	2e-04
TIGR03374	472	TIGR03374, ABALDH, 1-pyrroline dehydrogenase	2e-04
PTZ00381	493	PTZ00381, PTZ00381, aldehyde dehydrogenase family	5e-04
PRK13968	462	PRK13968, PRK13968, putative succinate semialdehyd	5e-04
PLN02466	538	PLN02466, PLN02466, aldehyde dehydrogenase family	6e-04
cd07094	453	cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NA	6e-04
cd07120	455	cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida al	7e-04
PLN02419	604	PLN02419, PLN02419, methylmalonate-semialdehyde de	7e-04
cd07146	451	cd07146, ALDH_PhpJ, Streptomyces putative phosphon	7e-04
PLN02315	508	PLN02315, PLN02315, aldehyde dehydrogenase family	0.001
cd06534	367	cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehyd	0.002
cd07118	454	cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbos	0.003
pfam00171	459	pfam00171, Aldedh, Aldehyde dehydrogenase family	0.004
cd07133	434	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehyd	0.004

>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like

 Score =  109 bits (274), Expect = 7e-30
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 26  GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAR 85
            T  G +ID+EQ  KILE IESGK +GA+L  GG R GDKG+++QPTVF++V DDM+IA+
Sbjct: 325 KTEQGPQIDEEQFKKILELIESGKKEGAKLECGGKRHGDKGYFIQPTVFSDVTDDMRIAK 384

Query: 86  EE 87
           EE
Sbjct: 385 EE 386

NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. Length = 481

>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins

 Score =  103 bits (258), Expect = 2e-27
 Identities = 38/77 (49%), Positives = 50/77 (64%)

Query: 11  KDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQ 70
           K   +   V       T  G ++ K Q DKIL +IESGK +GA L+ GG R G KG+++Q
Sbjct: 306 KARAEKRVVGDPFDPDTFQGPQVSKAQFDKILSYIESGKKEGATLLTGGERHGSKGYFIQ 365

Query: 71  PTVFANVRDDMKIAREE 87
           PTVF +V+DDMKIA+EE
Sbjct: 366 PTVFTDVKDDMKIAKEE 382

ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. Also included in this subfamily is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial, homotetramers that oxidize acetaldehyde and glycolaldehyde, as well as, the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Also included is the AldA aldehyde dehydrogenase of Aspergillus nidulans (locus AN0554), the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) of Saccharomyces cerevisiae, and other similar sequences. Length = 476

>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like

 Score = 91.8 bits (228), Expect = 2e-23
 Identities = 37/64 (57%), Positives = 50/64 (78%)

Query: 24  RAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKI 83
           R G   G ++DKEQ +KIL +IE GK +GA L+ GG R G KG+Y+QPT+F++V+DDMKI
Sbjct: 319 RKGVEQGPQVDKEQFEKILSYIEHGKEEGATLITGGDRIGSKGYYIQPTIFSDVKDDMKI 378

Query: 84  AREE 87
           AR+E
Sbjct: 379 ARDE 382

Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Length = 476

>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member

 Score = 91.8 bits (228), Expect = 2e-23
 Identities = 35/64 (54%), Positives = 46/64 (71%)

Query: 24  RAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKI 83
           + G   G +ID EQ +KIL +I+SG   GA L  GG R G KG+Y+QPTVF+NV+DDM I
Sbjct: 373 KKGVEQGPQIDSEQFEKILRYIKSGVESGATLECGGDRFGSKGYYIQPTVFSNVQDDMLI 432

Query: 84  AREE 87
           A++E
Sbjct: 433 AQDE 436

Length = 538

>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional

 Score = 88.4 bits (220), Expect = 3e-22
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 10/78 (12%)

Query: 20  TQGLRAG------TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYV 69
            + +R G      T +G  +     DK+L +IE GK++GA+L+ GG R        G +V
Sbjct: 308 VERIRIGDPMDPATNFGPLVSFAHRDKVLGYIEKGKAEGARLLCGGERLTEGGFANGAFV 367

Query: 70  QPTVFANVRDDMKIAREE 87
            PTVF +  DDM I REE
Sbjct: 368 APTVFTDCTDDMTIVREE 385

Length = 488

>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family

 Score = 88.0 bits (219), Expect = 3e-22
 Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 13  LDKTNYVTQG--LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQ 70
           ++    +  G  L   T  G  I K+Q +++L +IE  K +GA+L+ GG    +KG++V+
Sbjct: 290 VEAAKSLKVGDPLDPDTDIGPLISKKQRERVLSYIEDAKEEGAKLLCGGEAGLEKGYFVE 349

Query: 71  PTVFANVRDDMKIAREE 87
           PTV A+V  DM+IA+EE
Sbjct: 350 PTVLADVTPDMRIAQEE 366

This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor. The family includes the following members: The prototypical members are the aldehyde dehydrogenases EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This family also includes omega crystallin, an eye lens protein from squid and octopus that has little aldehyde dehydrogenase activity. Length = 459

>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like

 Score = 83.4 bits (207), Expect = 1e-20
 Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 2/57 (3%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGR--AGDKGFYVQPTVFANVRDDMKIAREE 87
           + +   DK+L +IESGK++GA+LVAGG R      GF+V+PTVF  V  DM+IAREE
Sbjct: 312 VSEAHFDKVLGYIESGKAEGARLVAGGKRVLTETGGFFVEPTVFDGVTPDMRIAREE 368

NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD. Length = 462

>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase

 Score = 82.6 bits (204), Expect = 3e-20
 Identities = 31/58 (53%), Positives = 46/58 (79%)

Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           G ++DK+Q +KIL +IE GK +GA L+ GG   GDKG+Y++PT+F +V +DMKIA++E
Sbjct: 342 GPQVDKQQFEKILSYIEHGKREGATLLTGGKPCGDKGYYIEPTIFTDVTEDMKIAQDE 399

Length = 501

>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like

 Score = 81.5 bits (202), Expect = 6e-20
 Identities = 29/63 (46%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 27  TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR-AG-DKGFYVQPTVFANVRDDMKIA 84
           T  G      Q +++  +I  G+++GA+LV GGGR AG D+G++V+PT+FA+V +DM+IA
Sbjct: 316 TQIGPLASARQRERVEGYIAKGRAEGARLVTGGGRPAGLDRGWFVEPTLFADVDNDMRIA 375

Query: 85  REE 87
           +EE
Sbjct: 376 QEE 378

The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD. Length = 471

>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like

 Score = 81.1 bits (201), Expect = 9e-20
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR--AGDKGFYVQPTVFAN 76
           V   L  G   G  + + Q++K L +IE  +S+GA+LV GG R    D+G+Y+ P +FA 
Sbjct: 307 VGDALDEGVDIGPVVSERQLEKDLRYIEIARSEGAKLVYGGERLKRPDEGYYLAPALFAG 366

Query: 77  VRDDMKIAREE 87
           V +DM+IAREE
Sbjct: 367 VTNDMRIAREE 377

Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group. Length = 473

>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins

 Score = 81.1 bits (201), Expect = 1e-19
 Identities = 33/64 (51%), Positives = 46/64 (71%), Gaps = 2/64 (3%)

Query: 26  GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA--GDKGFYVQPTVFANVRDDMKI 83
           GT+ G  I   Q D++  +I  G+ +GA+LV GGGR    DKGFYV+PT+FA+V +DM+I
Sbjct: 302 GTVMGPLISAAQRDRVEGYIARGRDEGARLVTGGGRPAGLDKGFYVEPTLFADVDNDMRI 361

Query: 84  AREE 87
           A+EE
Sbjct: 362 AQEE 365

The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD. Length = 459

>gnl|CDD|143425 cd07107, ALDH_PhdK-like, Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like

 Score = 77.4 bits (191), Expect = 2e-18
 Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 4/67 (5%)

Query: 25  AGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYVQPTVFANVRDD 80
             T  G  + ++Q D+++ +I+S K +GA+LV GGGR    A + GFYV+PTVFA+V   
Sbjct: 294 PATTMGPLVSRQQYDRVMHYIDSAKREGARLVTGGGRPEGPALEGGFYVEPTVFADVTPG 353

Query: 81  MKIAREE 87
           M+IAREE
Sbjct: 354 MRIAREE 360

Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD. Length = 456

>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like

 Score = 77.2 bits (190), Expect = 2e-18
 Identities = 29/77 (37%), Positives = 50/77 (64%)

Query: 11  KDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQ 70
           K+  K   V       T  G ++ + Q ++I+ +IESGK++GA +  GG R G++G++++
Sbjct: 309 KEKAKKLKVGDPFAEDTFQGPQVSQIQYERIMSYIESGKAEGATVETGGKRHGNEGYFIE 368

Query: 71  PTVFANVRDDMKIAREE 87
           PT+F +V +DMKI +EE
Sbjct: 369 PTIFTDVTEDMKIVKEE 385

NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD. Length = 481

>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family

 Score = 76.9 bits (190), Expect = 3e-18
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR-AGDKGFYVQPTV 73
           K   V   L   T  G  I   Q+D++L +IE  K++GA+L+ GG R  G KG++V PTV
Sbjct: 264 KALKVGNPLDPDTDMGPLISAAQLDRVLAYIEDAKAEGAKLLCGGKRLEGGKGYFVPPTV 323

Query: 74  FANVRDDMKIAREE 87
             +V  DM IA+EE
Sbjct: 324 LTDVDPDMPIAQEE 337

The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer to the cofactor and formation of a thioacylenzyme intermediate. Hydrolysis of the thioacylenzyme and release of the carboxylic acid product occurs, and in most cases, the reduced cofactor dissociates from the enzyme. The evolutionary phylogenetic tree of ALDHs appears to have an initial bifurcation between what has been characterized as the classical aldehyde dehydrogenases, the ALDH family (ALDH) and extended family members or aldehyde dehydrogenase-like (ALDH-like) proteins. The ALDH proteins are represented by enzymes which share a number of highly conserved residues necessary for catalysis and cofactor binding and they include such proteins as retinal dehydrogenase, 10-formyltetrahydrofolate dehydrogenase, non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase, delta(1)-pyrroline-5-carboxylate dehydrogenases, alpha-ketoglutaric semialdehyde dehydrogenase, alpha-aminoadipic semialdehyde dehydrogenase, coniferyl aldehyde dehydrogenase and succinate-semialdehyde dehydrogenase. Included in this larger group are all human, Arabidopsis, Tortula, fungal, protozoan, and Drosophila ALDHs identified in families ALDH1 through ALDH22 with the exception of families ALDH18, ALDH19, and ALDH20 which are present in the ALDH-like group. Length = 432

>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like

 Score = 76.6 bits (189), Expect = 4e-18
 Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 6/81 (7%)

Query: 13  LDKTNYVTQG--LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA----GDKG 66
           +++   +  G  L   T+ G ++ K+Q++KIL +++ GK +GA+++ GG R      DKG
Sbjct: 304 VERFEAIKVGNPLDPETMMGAQVSKDQLEKILSYVDIGKEEGAEVLTGGERLTLGGLDKG 363

Query: 67  FYVQPTVFANVRDDMKIAREE 87
           ++ +PT+     +DM+I +EE
Sbjct: 364 YFYEPTLIKGGNNDMRIFQEE 384

Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences. Length = 480

>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like

 Score = 75.6 bits (187), Expect = 8e-18
 Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 3/58 (5%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGG-GR-AG-DKGFYVQPTVFANVRDDMKIAREE 87
               Q D++  +I+ G  +GA+LVAGG GR  G ++G++V+PTVFA+V  DM IAREE
Sbjct: 316 ASAAQFDRVQGYIQKGIEEGARLVAGGPGRPEGLERGYFVKPTVFADVTPDMTIAREE 373

The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD. Length = 466

>gnl|CDD|143433 cd07115, ALDH_HMSADH_HapE, Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 26/61 (42%), Positives = 45/61 (73%)

Query: 27  TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIARE 86
           T  G  + + Q D++L++++ G+ +GA+L+ GG R G +GF+V+PT+FA V  +M+IA+E
Sbjct: 297 TQMGPLVSQAQFDRVLDYVDVGREEGARLLTGGKRPGARGFFVEPTIFAAVPPEMRIAQE 356

Query: 87  E 87
           E
Sbjct: 357 E 357

4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD. Length = 453

>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase

 Score = 74.8 bits (184), Expect = 2e-17
 Identities = 32/70 (45%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYVQPTVFANV 77
                T  G  I     DK+L +IE GK++GA L  GGGR        GF+V+PTVFA+ 
Sbjct: 308 PFDEATEMGPLISAAHRDKVLSYIEKGKAEGATLATGGGRPENVGLQNGFFVEPTVFADC 367

Query: 78  RDDMKIAREE 87
            DDM I REE
Sbjct: 368 TDDMTIVREE 377

Under osmotic stress, betaine aldehyde dehydrogenase oxidizes glycine betaine aldehyde into the osmoprotectant glycine betaine, via the second of two oxidation steps from exogenously supplied choline or betaine aldehyde. This choline-glycine betaine synthesis pathway can be found in gram-positive and gram-negative bacteria. In Escherichia coli, betaine aldehyde dehydrogenase (betB) is osmotically co-induced with choline dehydrogenase (betA) in the presence of choline. These dehydrogenases are located in a betaine gene cluster with the upstream choline transporter (betT) and transcriptional regulator (betI). Similar to E.coli, betaine synthesis in Staphylococcus xylosus is also influenced by osmotic stress and the presence of choline with genes localized in a functionally equivalent gene cluster. Organization of the betaine gene cluster in Sinorhizobium meliloti and Bacillus subtilis differs from that of E.coli by the absence of upstream choline transporter and transcriptional regulator homologues. Additionally, B.subtilis co-expresses a type II alcohol dehydrogenase with betaine aldehyde dehydrogenase instead of choline dehydrogenase as in E.coli, St.xylosus, and Si.meliloti. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171) [Cellular processes, Adaptations to atypical conditions]. Length = 467

>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like

 Score = 74.3 bits (183), Expect = 2e-17
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD----KGFYVQPTVFANV 77
           GL A T  G  +  E  +K+L +I+ GK +GA+LV GG R       KG++V+PT+F +V
Sbjct: 309 GLDADTEMGPLVSAEHREKVLSYIQLGKEEGARLVCGGKRPTGDELAKGYFVEPTIFDDV 368

Query: 78  RDDMKIAREE 87
              M+I +EE
Sbjct: 369 DRTMRIVQEE 378

Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde. Length = 482

>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like

 Score = 73.6 bits (181), Expect = 5e-17
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 9   FTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG---GRAGDK 65
           F + + +   V       T+ G ++ K Q D++L +IE GK +GA+LV GG        K
Sbjct: 307 FVEHVKQNYKVGSPFDDDTVVGPQVSKTQYDRVLSYIEKGKKEGAKLVYGGEKAPEGLGK 366

Query: 66  GFYVQPTVFANVRDDMKIAREE 87
           G+++ PT+F +V  DM+I +EE
Sbjct: 367 GYFIPPTIFTDVPQDMRIVKEE 388

NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD. Length = 484

>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone dehydrogenase-like

 Score = 72.4 bits (178), Expect = 1e-16
 Identities = 26/59 (44%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGR-AGDKGFYVQPTVFANVRDDMKIAREE 87
           G  I++ Q+ KI +++++G+++GA L+ GG R A   G + QPT+F +V  DM IAREE
Sbjct: 302 GAIINEAQLAKITDYVDAGRAEGATLLLGGERLASAAGLFYQPTIFTDVTPDMAIAREE 360

Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase. Length = 454

>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1

 Score = 72.0 bits (177), Expect = 2e-16
 Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 11/79 (13%)

Query: 20  TQGLRAG------TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-----DKGFY 68
           T+ +R G      T  G  I +E ++K+L +IES K +GA+++ GG R       + GFY
Sbjct: 282 TKKIRIGDPLDEDTQMGALISEEHLEKVLGYIESAKQEGAKVLCGGERVVPEDGLENGFY 341

Query: 69  VQPTVFANVRDDMKIAREE 87
           V P V  +  DDM I REE
Sbjct: 342 VSPCVLTDCTDDMTIVREE 360

NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis. Length = 457

>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like

 Score = 71.7 bits (176), Expect = 2e-16
 Identities = 27/65 (41%), Positives = 47/65 (72%), Gaps = 4/65 (6%)

Query: 27  TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYVQPTVFANVRDDMK 82
           T  G +++K+Q+DKIL +++  K +GA+++ GG R      DKGF+++PT+  NV +DM+
Sbjct: 315 TQMGAQVNKDQLDKILSYVDIAKEEGAKILTGGHRLTENGLDKGFFIEPTLIVNVTNDMR 374

Query: 83  IAREE 87
           +A+EE
Sbjct: 375 VAQEE 379

Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD. Length = 475

>gnl|CDD|143432 cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like

 Score = 71.0 bits (175), Expect = 3e-16
 Identities = 18/55 (32%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 37  QMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVRDDMKIAREE 87
           Q++K+  ++   + +GA+++ GG R        G++ +PT+ A+V +DM+IA+EE
Sbjct: 309 QLEKVERYVARAREEGARVLTGGERPSGADLGAGYFFEPTILADVTNDMRIAQEE 363

Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD. Length = 457

>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like

 Score = 70.5 bits (174), Expect = 5e-16
 Identities = 25/66 (37%), Positives = 40/66 (60%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
           GL  GT  G  I++  ++K+   +E   ++GA+++ GG R G  G++ +PTV  +V DDM
Sbjct: 292 GLDEGTDMGPLINERAVEKVEALVEDAVAKGAKVLTGGKRLGLGGYFYEPTVLTDVTDDM 351

Query: 82  KIAREE 87
            I  EE
Sbjct: 352 LIMNEE 357

Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species. Length = 451

>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins

 Score = 69.9 bits (172), Expect = 8e-16
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA--GDKGFYVQPTVFANVRD 79
            L  GT+ G  I++  ++K L  IE  KSQG  ++ GG R   G+ G YV+PT+   V D
Sbjct: 311 PLDEGTLVGPLINQAAVEKYLNAIEIAKSQGGTVLTGGKRIDGGEPGNYVEPTIVTGVTD 370

Query: 80  DMKIAREE 87
           D +I +EE
Sbjct: 371 DARIVQEE 378

ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105). Length = 478

>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase

 Score = 69.8 bits (171), Expect = 1e-15
 Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 6/80 (7%)

Query: 10  TKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD--KGF 67
            K++  ++ + +G R G +    + + Q +K+L+FI + KS+GA ++ GG R     KGF
Sbjct: 318 AKNIKISDPLEEGCRLGPV----VSEGQYEKVLKFISTAKSEGATILCGGKRPEHLKKGF 373

Query: 68  YVQPTVFANVRDDMKIAREE 87
           +++PT+  +V   M+I REE
Sbjct: 374 FIEPTIITDVTTSMQIWREE 393

Length = 503

>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase; Provisional

 Score = 69.6 bits (171), Expect = 1e-15
 Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           I++   DKI+ +IE GK +G +LV GG     KG+++QPT+FA+V    +I +EE
Sbjct: 362 INQASFDKIMSYIEIGKEEG-RLVLGGEGDDSKGYFIQPTIFADVDPKARIMQEE 415

Length = 514

>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy production and conversion]

 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 27/58 (46%), Positives = 41/58 (70%), Gaps = 2/58 (3%)

Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           G  I +EQ+D++  +IE   ++GA+L+AGG R G  G++V+PT+   V  DM+IAREE
Sbjct: 316 GPLISEEQLDRVEGYIEDAVAEGARLLAGGKRPG--GYFVEPTILEGVTPDMRIAREE 371

Length = 472

>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like

 Score = 68.1 bits (167), Expect = 4e-15
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 2/71 (2%)

Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR--AGDKGFYVQPTVFAN 76
           V   L  G   G  + + Q +K+L FI  GK +GA+L+ GG R    +KG+++ PTVFA+
Sbjct: 292 VGDPLEEGVRLGPLVSQAQYEKVLSFIARGKEEGARLLCGGRRPAHLEKGYFIAPTVFAD 351

Query: 77  VRDDMKIAREE 87
           V  D +I REE
Sbjct: 352 VPTDSRIWREE 362

Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine. Length = 456

>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like

 Score = 67.4 bits (165), Expect = 7e-15
 Identities = 32/73 (43%), Positives = 47/73 (64%), Gaps = 4/73 (5%)

Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA----GDKGFYVQPTVF 74
           V  GL   T  G  I++ Q++K+L + E GK +GA L+ GG R      +KG++V+PTVF
Sbjct: 307 VGDGLDEETDMGPLINEAQLEKVLNYNEIGKEEGATLLLGGERLTGGGYEKGYFVEPTVF 366

Query: 75  ANVRDDMKIAREE 87
            +V  DM+IA+EE
Sbjct: 367 TDVTPDMRIAQEE 379

Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD. Length = 478

>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like

 Score = 67.2 bits (165), Expect = 8e-15
 Identities = 21/59 (35%), Positives = 40/59 (67%), Gaps = 4/59 (6%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVRDDMKIAREE 87
           I KE ++K+L ++E  +++GA ++ GGGR      + G++V+PTV   + +D ++A+EE
Sbjct: 303 ISKEHLEKVLGYVELARAEGATILTGGGRPELPDLEGGYFVEPTVITGLDNDSRVAQEE 361

In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone. Length = 455

>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like

 Score = 64.9 bits (159), Expect = 5e-14
 Identities = 25/73 (34%), Positives = 40/73 (54%)

Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K   V  GL  GT  G   +K Q DK+ E +E  K++GA+++AGG      G+++ PT+ 
Sbjct: 280 KAAVVGDGLDPGTTLGPVQNKMQYDKVKELVEDAKAKGAKVLAGGEPLDGPGYFIPPTIV 339

Query: 75  ANVRDDMKIAREE 87
            +  +  +I  EE
Sbjct: 340 DDPPEGSRIVDEE 352

Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD. Length = 446

>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like

 Score = 63.8 bits (156), Expect = 1e-13
 Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGD---KGFYVQPTVFANVRDDMKIAREE 87
           I  +Q+D++  F+   +++GA++VAGG  A      G++V PT+  +V  D ++A+EE
Sbjct: 302 ISAKQLDRVEGFVARARARGARIVAGGRIAEGAPAGGYFVAPTLLDDVPPDSRLAQEE 359

Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD. Length = 454

>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L

 Score = 63.7 bits (155), Expect = 1e-13
 Identities = 28/65 (43%), Positives = 39/65 (60%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L   T  G +  K  +DK++E+ E G  +GA LV GG +    GF+ +PTVF +V D M 
Sbjct: 324 LDRSTDHGPQNHKAHLDKLVEYCERGVKEGATLVYGGKQVDRPGFFFEPTVFTDVEDHMF 383

Query: 83  IAREE 87
           IA+EE
Sbjct: 384 IAKEE 388

10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids. Length = 486

>gnl|CDD|143442 cd07124, ALDH_PutA-P5CDH-RocA, Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA

 Score = 63.8 bits (156), Expect = 1e-13
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 3/57 (5%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGD--KGFYVQPTVFANVRDDMKIAREE 87
           IDK   D+I  +IE GKS+G +L+ GG       +G++VQPT+FA+V  D ++A+EE
Sbjct: 358 IDKGARDRIRRYIEIGKSEG-RLLLGGEVLELAAEGYFVQPTIFADVPPDHRLAQEE 413

Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. Length = 512

>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins

 Score = 63.7 bits (156), Expect = 1e-13
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
               T+ G  I++ Q+D++   +E   + GA+L+ GG     +G + QPTV ++V  DM 
Sbjct: 275 RDPDTVIGPLINERQVDRVHAIVEDAVAAGARLLTGGTY---EGLFYQPTVLSDVTPDMP 331

Query: 83  IAREE 87
           I REE
Sbjct: 332 IFREE 336

ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences. Length = 431

>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 25  AGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA-GDKGFYVQPTVFANVRDDMKI 83
           A T  G  +++  +DK+ E +E     GA L+ GG R  G+KG++ +PTV  NVR DM+I
Sbjct: 311 AATDMGPLVNEAALDKVEEMVERAVEAGATLLTGGKRPEGEKGYFYEPTVLTNVRQDMEI 370

Query: 84  AREE 87
            +EE
Sbjct: 371 VQEE 374

Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD. Length = 468

>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 26  GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAR 85
            T+ G  I++ Q+D +L+ IE    +GA L+ GG   G+    ++PTV ++V +DM+IAR
Sbjct: 310 DTVVGPLINESQVDGLLDKIEQAVEEGATLLVGGEAEGN---VLEPTVLSDVTNDMEIAR 366

Query: 86  EE 87
           EE
Sbjct: 367 EE 368

NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD. Length = 465

>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2

 Score = 58.3 bits (142), Expect = 1e-11
 Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR-----AGDKGFYVQPTV 73
           V  G   G   G  I     ++I   IESG  +GA+LV  G R       + G +V PT+
Sbjct: 307 VGAGDDPGADMGPVISPAAKERIEGLIESGVEEGAKLVLDG-RGVKVPGYENGNFVGPTI 365

Query: 74  FANVRDDMKIAREE 87
             NV  DMKI +EE
Sbjct: 366 LDNVTPDMKIYKEE 379

Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD. Length = 478

>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family

 Score = 57.9 bits (140), Expect = 1e-11
 Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 26  GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDK--GFYVQPTVFANVRDDMKI 83
           GT+ G  I   Q D++  +++   ++G +   GGGR  D+  GF+V+PTV A + ++ ++
Sbjct: 321 GTVCGPVISARQRDRVQSYLDLAVAEGGRFACGGGRPADRDRGFFVEPTVIAGLDNNARV 380

Query: 84  AREE 87
           AREE
Sbjct: 381 AREE 384

This family describes a branch of the aldehyde dehydrogenase (NAD) family (see pfam00171) that includes Rv0768 from Mycobacterium tuberculosis. All members of this family belong to species predicted to synthesize mycofactocin, suggesting that this enzyme or another upstream or downstream in the same pathway might be mycofactocin-dependent. However, the taxonomic range of this family is not nearly broad enough to make that relationship conclusive [Unknown function, Enzymes of unknown specificity]. Length = 480

>gnl|CDD|143434 cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like

 Score = 57.1 bits (138), Expect = 3e-11
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 13  LDKTNYVTQG--LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA-----GDK 65
           L++   + QG  L   T+ G +   EQ++KIL +I+ GK +GA+++ GG R         
Sbjct: 304 LERVKAIKQGNPLDTETMIGAQASLEQLEKILSYIDIGKEEGAEVLTGGERNELGGLLGG 363

Query: 66  GFYVQPTVFANVRDDMKIAREE 87
           G+YV  T      + M+I +EE
Sbjct: 364 GYYVPTTFKGG--NKMRIFQEE 383

Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression. Length = 479

>gnl|CDD|143468 cd07150, ALDH_VaniDH_like, Pseudomonas putida vanillin dehydrogenase-like

 Score = 57.0 bits (138), Expect = 3e-11
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 25  AGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIA 84
             T+ G  I   Q+++I   +E   ++GA+L+ GG   G+   + QPTV  +V  DM+I 
Sbjct: 297 PDTVIGPLISPRQVERIKRQVEDAVAKGAKLLTGGKYDGN---FYQPTVLTDVTPDMRIF 353

Query: 85  REE 87
           REE
Sbjct: 354 REE 356

Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde. Length = 451

>gnl|CDD|143411 cd07092, ALDH_ABALDH-YdcW, Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like

 Score = 56.2 bits (136), Expect = 6e-11
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVR 78
           V       T  G      Q +++  F+E      A+++ GG RA   G++ +PTV A V 
Sbjct: 289 VGDPDDEDTEMGPLNSAAQRERVAGFVE-RAPAHARVLTGGRRAEGPGYFYEPTVVAGVA 347

Query: 79  DDMKIAREE 87
            D +I +EE
Sbjct: 348 QDDEIVQEE 356

NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency. Length = 450

>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase

 Score = 55.9 bits (135), Expect = 7e-11
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVR 78
           V  G   G   G  I++  + K+   ++   S+GA+++ GG R    G + +PTV  +V 
Sbjct: 332 VGDGFEEGVTQGPLINEAAVQKVESHVQDAVSKGAKVLLGGKRHSLGGTFYEPTVLGDVT 391

Query: 79  DDMKIAREE 87
           +DM I REE
Sbjct: 392 EDMLIFREE 400

Length = 498

>gnl|CDD|143417 cd07099, ALDH_DDALDH, Methylomonas sp

 Score = 55.7 bits (135), Expect = 9e-11
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 10/90 (11%)

Query: 6   AAVFTKDLDKTNYVTQGLRAGTIWGRKIDKE--------QMDKILEFIESGKSQGAQLVA 57
            +V+ + + +     + LR G       D +        Q+D +   ++   ++GA+ + 
Sbjct: 270 ESVYDEFVARLVAKARALRPG--ADDIGDADIGPMTTARQLDIVRRHVDDAVAKGAKALT 327

Query: 58  GGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           GG R+   G + +PTV  +V  DM + REE
Sbjct: 328 GGARSNGGGPFYEPTVLTDVPHDMDVMREE 357

4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid. Length = 453

>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and 22A1-like

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 10/77 (12%)

Query: 21  QGLRAGTIWGRKID------KEQMDKILEFIESGKSQGAQLVAGGGRAGD----KGFYVQ 70
           Q LR G      +D        + D++ E +     +GA+L+AGG R       +G Y  
Sbjct: 291 QALRQGPPLDGDVDVGAMISPARFDRLEELVADAVEKGARLLAGGKRYPHPEYPQGHYFP 350

Query: 71  PTVFANVRDDMKIAREE 87
           PT+  +V  DMKIA+EE
Sbjct: 351 PTLLVDVTPDMKIAQEE 367

Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation. Length = 465

>gnl|CDD|200087 TIGR01237, D1pyr5carbox2, delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative

 Score = 54.9 bits (132), Expect = 2e-10
 Identities = 24/55 (43%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           ID++  +KI+E+IE GK++G +LV+GG     KG+++ PT+FA+V    ++A+EE
Sbjct: 359 IDQKSFNKIMEYIEIGKAEG-RLVSGGCGDDSKGYFIGPTIFADVDRKARLAQEE 412

This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs [Energy metabolism, Amino acids and amines]. Length = 511

>gnl|CDD|188167 TIGR01780, SSADH, succinate-semialdehyde dehydrogenase

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K   V  GL  G   G  I+++ ++K+ + I     +GA++V GG R    G + +PTV 
Sbjct: 286 KKLKVGNGLDEGVTQGPLINEKAVEKVEKHIADAVEKGAKVVTGGKRHELGGNFFEPTVL 345

Query: 75  ANVRDDMKIAREE 87
           +NV  DM +++EE
Sbjct: 346 SNVTADMLVSKEE 358

Succinic semialdehyde dehydrogenase is one of three enzymes constituting 4-aminobutyrate (GABA) degradation in both prokaryotes and eukaryotes, catalyzing the (NAD(P)+)-dependent catabolism reaction of succinic semialdehyde to succinate for metabolism by the citric acid cycle. The EC number depends on the cofactor: 1.2.1.24 for NAD only, 1.2.1.79 for NADP only, and 1.2.1.16 if both can be used. In Escherichia coli, succinic semialdehyde dehydrogenase is located in an unidirectionally transcribed gene cluster encoding enzymes for GABA degradation and is suggested to be cotranscribed with succinic semialdehyde transaminase from a common promoter upstream of SSADH. Similar gene arrangements can be found in characterized Ralstonia eutropha and the genome analysis of Bacillus subtilis. Prokaryotic succinic semialdehyde dehydrogenases (1.2.1.16) share high sequence homology to characterized succinic semialdehyde dehydrogenases from rat and human (1.2.1.24), exhibiting conservation of proposed cofactor binding residues, and putative active sites (G-237 & G-242, C-293 & G-259 respectively of rat SSADH). Eukaryotic SSADH enzymes exclusively utilize NAD+ as a cofactor, exhibiting little to no NADP+ activity. While a NADP+ preference has been detected in prokaryotes in addition to both NADP+- and NAD+-dependencies as in E.coli, Pseudomonas, and Klebsiella pneumoniae. The function of this alternative SSADH currently is unknown, but has been suggested to play a possible role in 4-hydroxyphenylacetic degradation. Just outside the scope of this model, are several sequences belonging to clades scoring between trusted and noise. These sequences may be actual SSADH enzymes, but lack sufficiently close characterized homologs to make a definitive assignment at this time. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070) [Central intermediary metabolism, Other]. Length = 448

>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase; Provisional

 Score = 53.0 bits (128), Expect = 9e-10
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 33  IDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           I     D++  F+E  K+ G  ++V GG     KG+Y +PT+ A  R D +I + E
Sbjct: 323 ISAAHRDRVAGFVERAKALGHIRVVTGGEAPDGKGYYYEPTLLAGARQDDEIVQRE 378

Length = 475

>gnl|CDD|143467 cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L   T  G  I + + ++I E++E     GA+L+ GG R G     ++PTV  +V  DMK
Sbjct: 297 LDEDTDVGPMISEAEAERIEEWVEEAVEGGARLLTGGKRDGA---ILEPTVLTDVPPDMK 353

Query: 83  IAREE 87
           +  EE
Sbjct: 354 VVCEE 358

Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD. Length = 453

>gnl|CDD|143418 cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like

 Score = 52.8 bits (128), Expect = 1e-09
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query: 35  KEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           K+  D++ E +E   + GA L+ GG R    G +  PTV  +V   M    EE
Sbjct: 283 KDLRDELHEQVEEAVAAGATLLLGGKRPDGPGAFYPPTVLTDVTPGMPAYDEE 335

Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate. Length = 429

>gnl|CDD|143426 cd07108, ALDH_MGR_2402, Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 9/67 (13%)

Query: 26  GTIWGRKIDKEQMDKILEFIESGKS-QGAQLVAGG----GRAGDKGFYVQPTVFANVRDD 80
           G I    I ++Q  K+  +I+ G S  GA ++ GG          GF+VQPT+F+ V ++
Sbjct: 300 GAI----ISEKQFAKVCGYIDLGLSTSGATVLRGGPLPGEGPLADGFFVQPTIFSGVDNE 355

Query: 81  MKIAREE 87
            ++AREE
Sbjct: 356 WRLAREE 362

NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD. Length = 457

>gnl|CDD|143401 cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           ID +  D +   I+   ++GA ++ GGGR G     + PT+   V  DM++A EE
Sbjct: 325 IDPKSADFVEGLIDDAVAKGATVLNGGGREGGN--LIYPTLLDPVTPDMRLAWEE 377

NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants. Length = 473

>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I; Provisional

 Score = 51.1 bits (122), Expect = 4e-09
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVR 78
           +  GL  G   G  ID++ + K+ E I     +GA++V GG      G + QPT+  +V 
Sbjct: 318 IGDGLEKGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHELGGNFFQPTILVDVP 377

Query: 79  DDMKIAREE 87
            + K+A+EE
Sbjct: 378 ANAKVAKEE 386

Length = 482

>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 7/72 (9%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD-------KGFYVQPTVFA 75
           L   T  G  I  E + K+L ++E+ + +GA ++ GG RA         +G YV PTVF 
Sbjct: 311 LDPETEVGPLIHPEHLAKVLGYVEAAEKEGATILVGGERAPTFRGEDLGRGNYVLPTVFT 370

Query: 76  NVRDDMKIAREE 87
              + M+IA+EE
Sbjct: 371 GADNHMRIAQEE 382

This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring. Length = 488

>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional

 Score = 50.5 bits (121), Expect = 7e-09
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           G  I+   ++++ + +     +GA++  GG     KG+Y  PT+  +VR +M I  EE
Sbjct: 255 GPLINAAALERVEQKVARAVEEGARVALGGKAVEGKGYYYPPTLLLDVRQEMSIMHEE 312

Length = 409

>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like

 Score = 49.0 bits (117), Expect = 2e-08
 Identities = 16/66 (24%), Positives = 36/66 (54%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
            +    ++G   ++   DK+  +++  +++G ++V GG     +G++VQPT+      D 
Sbjct: 316 PMDESVMFGPLANQPHFDKVCSYLDDARAEGDEIVRGGEALAGEGYFVQPTLVLARSADS 375

Query: 82  KIAREE 87
           ++ REE
Sbjct: 376 RLMREE 381

NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate. Length = 477

>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  GT+ G    K  +D  L  IE  KSQG  ++ GG      G YV+PT+      D  
Sbjct: 311 LDDGTLVGPLHTKAAVDNYLAAIEEAKSQGGTVLFGGKVIDGPGNYVEPTI-VEGLSDAP 369

Query: 83  IAREE 87
           I +EE
Sbjct: 370 IVKEE 374

Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer. Length = 474

>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde dehydrogenase

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 26  GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG-----RAGDKGFYVQPTVFANVRDD 80
            T  G  I  E  DK+L +      +GA +V GGG      A   G +VQPT++  + D 
Sbjct: 319 ATNMGPLISAEHRDKVLSYYALAVEEGATVVTGGGVPDFGDALAGGAWVQPTIWTGLPDS 378

Query: 81  MKIAREE 87
            ++  EE
Sbjct: 379 ARVVTEE 385

Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation [Energy metabolism, Other]. Length = 481

>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           G  +D  Q+ +I E +E G+++GA +   G     KG +  PT+F NV    +IA+EE
Sbjct: 329 GAIVDPAQLKRIRELVEEGRAEGADVFQPGADLPSKGPFYPPTLFTNVPPASRIAQEE 386

Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence. Length = 480

>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           +AAVFTKD+DK    +  LRAGT+W
Sbjct: 415 AAAVFTKDIDKAITFSNALRAGTVW 439

NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. Length = 481

>gnl|CDD|143402 cd07083, ALDH_P5CDH, ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 26  GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAR 85
           GT  G  ID EQ  K+L +IE GK++G QLV GG R   +G++V PTV   V    +IA+
Sbjct: 339 GTDLGPVIDAEQEAKVLSYIEHGKNEG-QLVLGGKRLEGEGYFVAPTVVEEVPPKARIAQ 397

Query: 86  EE 87
           EE
Sbjct: 398 EE 399

ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH. Length = 500

>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase II-like

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           I+  Q+D++   ++   + GA+L AGG      G + +PTV + V+  M    EE
Sbjct: 296 INARQLDRVHAIVDDSVAAGARLEAGGTY---DGLFYRPTVLSGVKPGMPAFDEE 347

NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids. Length = 443

>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 33  IDKEQMDKILEFIESGKSQ-GAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           ID++  D+I  +I+  KS   A+++AGG      G++V+PTV        K+  EE
Sbjct: 361 IDEKAFDRIKGYIDHAKSDPEAEIIAGGKCDDSVGYFVEPTVIETTDPKHKLMTEE 416

Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences. Length = 522

>gnl|CDD|143423 cd07105, ALDH_SaliADH, Salicylaldehyde dehydrogenase, DoxF-like

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGG-GRAGDKGFYVQPTVFANVRDDMKIAREE 87
           +     D++ E ++   S+GA+LV GG       G  + PT+  NV  DM I  EE
Sbjct: 282 VSAAAADRVKELVDDALSKGAKLVVGGLADESPSGTSMPPTILDNVTPDMDIYSEE 337

Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD. Length = 432

>gnl|CDD|143463 cd07145, ALDH_LactADH_F420-Bios, Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like

 Score = 44.6 bits (106), Expect = 6e-07
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L   T  G  I  E ++++   +     +G +++ GG    D+G +  PTV  N   DM 
Sbjct: 299 LDESTDLGPLISPEAVERMENLVNDAVEKGGKILYGG--KRDEGSFFPPTVLENDTPDMI 356

Query: 83  IAREE 87
           + +EE
Sbjct: 357 VMKEE 361

NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD. Length = 456

>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKG--FYVQPTVFANVRDDMKIAREE 87
           I + Q++ +   ++   ++GA ++AGG    D G  FY +PTV   V  DM++AREE
Sbjct: 338 ISEAQLETVSAHVDDAVAKGATVLAGGKARPDLGPLFY-EPTVLTGVTPDMELAREE 393

Length = 524

>gnl|CDD|143465 cd07147, ALDH_F21_RNP123, Aldehyde dehydrogenase family 21A1-like

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
               T  G  I + + +++  ++      GA+L+ GG R    G  ++PT+  +V  DM+
Sbjct: 296 KDDATDVGPMISESEAERVEGWVNEAVDAGAKLLTGGKR---DGALLEPTILEDVPPDME 352

Query: 83  IAREE 87
           +  EE
Sbjct: 353 VNCEE 357

Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD. Length = 452

>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase AlkH-like

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGG-RAGDKGFYVQPTVFANVRDDMKIAREE 87
            R ++    D++   ++   ++GA++  GG   A  +  Y+ PTV  NV  DMKI +EE
Sbjct: 281 ARIVNDRHFDRLKGLLDDAVAKGAKVEFGGQFDAAQR--YIAPTVLTNVTPDMKIMQEE 337

Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD. Length = 433

>gnl|CDD|143419 cd07101, ALDH_SSADH2_GabD2, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKG--FYVQPTVFANVRD 79
            L  G   G  I + Q+D++   ++   ++GA ++AGG    D G  FY +PTV   V +
Sbjct: 291 ALDYGPDMGSLISQAQLDRVTAHVDDAVAKGATVLAGGRARPDLGPYFY-EPTVLTGVTE 349

Query: 80  DMKIAREE 87
           DM++  EE
Sbjct: 350 DMELFAEE 357

Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s). Length = 454

>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase

 Score = 42.2 bits (99), Expect = 6e-06
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGF----YVQPTVFANV 77
           G   G   G  I  +  D++   I  G ++GA+++  G      G+    +V PT+   V
Sbjct: 309 GDDPGAEMGPLITPQAKDRVASLIAGGAAEGAEVLLDGRGYKVDGYEEGNWVGPTLLERV 368

Query: 78  RDDMKIAREE 87
              MK  +EE
Sbjct: 369 PPTMKAYQEE 378

Involved in valine catabolism, methylmalonate-semialdehyde dehydrogenase catalyzes the irreversible NAD+- and CoA-dependent oxidative decarboxylation of methylmalonate semialdehyde to propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase has been characterized in both prokaryotes and eukaryotes, functioning as a mammalian tetramer and a bacterial homodimer. Although similar in monomeric molecular mass and enzymatic activity, the N-terminal sequence in P.aeruginosa does not correspond with the N-terminal sequence predicted for rat liver. Sequence homology to a variety of prokaryotic and eukaryotic aldehyde dehydrogenases places MMSDH in the aldehyde dehydrogenase (NAD+) superfamily (pfam00171), making MMSDH's CoA requirement unique among known ALDHs. Methylmalonate semialdehyde dehydrogenase is closely related to betaine aldehyde dehydrogenase, 2-hydroxymuconic semialdehyde dehydrogenase, and class 1 and 2 aldehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus [Energy metabolism, Amino acids and amines]. Length = 477

>gnl|CDD|143420 cd07102, ALDH_EDX86601, Uncharacterized aldehyde dehydrogenase of Synechococcus sp

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR---AGDKGFYVQPTVFANVRD 79
           L   T  G  +     D +   I    ++GA+ +  G         G Y+ PTV  NV  
Sbjct: 291 LDPSTTLGPVVSARAADFVRAQIADAIAKGARALIDGALFPEDKAGGAYLAPTVLTNVDH 350

Query: 80  DMKIAREE 87
            M++ REE
Sbjct: 351 SMRVMREE 358

PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD. Length = 452

>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L   T  G  ID    D +  FI  G+S+G  L+   GR       + PT+F +V  +  
Sbjct: 335 LDPATTMGTLIDCAHADSVHSFIREGESKGQLLL--DGRNAGLAAAIGPTIFVDVDPNAS 392

Query: 83  IAREE 87
           ++REE
Sbjct: 393 LSREE 397

Length = 494

>gnl|CDD|143466 cd07148, ALDH_RL0313, Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
               T  G  I   ++D++ E++    + GA+L+ GG R  D  +   PTV  +   D K
Sbjct: 298 TDPDTEVGPLIRPREVDRVEEWVNEAVAAGARLLCGGKRLSDTTY--APTVLLDPPRDAK 355

Query: 83  IAREE 87
           ++ +E
Sbjct: 356 VSTQE 360

Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD. Length = 455

>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like

 Score = 39.2 bits (92), Expect = 5e-05
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD---KGFYVQPTVFA 75
           V  GL   +  G  ID+  +D++   +E   + GA++V  GG   +   KG +++PT+  
Sbjct: 290 VGPGLDPASDMGPLIDRANVDRVDRMVERAIAAGAEVVLRGGPVTEGLAKGAFLRPTLLE 349

Query: 76  NVRDDMKIAREE 87
               D  I +EE
Sbjct: 350 VDDPDADIVQEE 361

Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural. Length = 455

>gnl|CDD|181826 PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 39  DKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           D++ + ++   + GA ++ GG R    G++  PTV  ++  DM++  EE
Sbjct: 314 DEVEKQVDDAVAAGATILCGGKRPDGPGWFYPPTVITDITPDMRLYTEE 362

Length = 457

>gnl|CDD|143406 cd07087, ALDH_F3-13-14_CALDH-like, ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           GR I++   D++   ++ GK      V  GG+   +  Y+ PT+  +V  D  + +EE
Sbjct: 279 GRIINERHFDRLASLLDDGK------VVIGGQVDKEERYIAPTILDDVSPDSPLMQEE 330

ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate. Length = 426

>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 13/25 (52%), Positives = 20/25 (80%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           +A VFTKD++K   V++ L+AGT+W
Sbjct: 411 AAGVFTKDINKALRVSRALKAGTVW 435

ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. Also included in this subfamily is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial, homotetramers that oxidize acetaldehyde and glycolaldehyde, as well as, the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Also included is the AldA aldehyde dehydrogenase of Aspergillus nidulans (locus AN0554), the aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) of Saccharomyces cerevisiae, and other similar sequences. Length = 476

>gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase ywdH-like

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           GR I+++  D++   +++GK      +  GG    +  Y++PT+  NV  D  + +EE
Sbjct: 279 GRIINEKHFDRLAGLLDNGK------IVFGGNTDRETLYIEPTILDNVTWDDPVMQEE 330

Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD. Length = 449

>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate dehydrogenase, group 1

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 26  GTIWGRKIDKEQMDKILEFIESGKSQGA--QLVAGGGRAGDKGFYVQPTVFANVRDDMKI 83
           GT  G  ID++   KI+++IE  KS  +   ++AGG      G++V+PTV  +      +
Sbjct: 353 GTFMGAVIDEKSFAKIVKYIEHAKSDPSALTILAGGKYDDSVGYFVEPTVVESKDPQEPL 412

Query: 84  AREE 87
            +EE
Sbjct: 413 MKEE 416

This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate [Energy metabolism, Amino acids and amines]. Length = 532

>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 11/25 (44%), Positives = 20/25 (80%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           +A VF+K++D  N +++ L+AGT+W
Sbjct: 411 AAGVFSKNIDTANTLSRALKAGTVW 435

Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde. Length = 476

>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           + AV+TKD+ + N V + LRAGT+W
Sbjct: 407 AGAVWTKDIARANRVARRLRAGTVW 431

Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde. Length = 482

>gnl|CDD|143450 cd07132, ALDH_F3AB, Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           GR I+     ++ + +  GK      VA GG+  +K  Y+ PTV  +V+    + +EE
Sbjct: 279 GRIINDRHFQRLKKLLSGGK------VAIGGQTDEKERYIAPTVLTDVKPSDPVMQEE 330

NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes. Length = 443

>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 37  QMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
            ++++++ +E  K+ G  +++ GG +    G+Y  PT+ A  + D  I ++E
Sbjct: 326 HLERVMKAVEEAKALGHIKVITGGEKRKGNGYYFAPTLLAGAKQDDAIVQKE 377

Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family. Length = 472

>gnl|CDD|240392 PTZ00381, PTZ00381, aldehyde dehydrogenase family protein; Provisional

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 29  WGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           + R +++    ++ E I+    +    V  GG    +  YV PT+  N   D  + +EE
Sbjct: 287 YSRIVNEFHTKRLAELIKDHGGK----VVYGGEVDIENKYVAPTIIVNPDLDSPLMQEE 341

Length = 493

>gnl|CDD|184426 PRK13968, PRK13968, putative succinate semialdehyde dehydrogenase; Provisional

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 39  DKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           D++   +E+  ++GA+L+ GG +    G Y  PTV ANV  +M   REE
Sbjct: 317 DELHHQVEATLAEGARLLLGGEKIAGAGNYYAPTVLANVTPEMTAFREE 365

Length = 462

>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           +A VFT++LD  N +++ LR GT+W
Sbjct: 465 AAGVFTQNLDTANTLSRALRVGTVW 489

Length = 538

>gnl|CDD|143413 cd07094, ALDH_F21_LactADH-like, ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L   T  G  I +E  +++  ++E     GA+L+ GG R    G   +PTV  +V  D K
Sbjct: 297 LDEDTDVGPLISEEAAERVERWVEEAVEAGARLLCGGER---DGALFKPTVLEDVPRDTK 353

Query: 83  IAREE 87
           ++ EE
Sbjct: 354 LSTEE 358

ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences. Length = 453

>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 11/25 (44%), Positives = 19/25 (76%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           +A+V+T+DL +   V + +RAGT+W
Sbjct: 390 AASVWTRDLARAMRVARAIRAGTVW 414

Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural. Length = 455

>gnl|CDD|166060 PLN02419, PLN02419, methylmalonate-semialdehyde dehydrogenase [acylating]

 Score = 36.3 bits (83), Expect = 7e-04
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYVQPTVF 74
           VT G       G  I K+  ++I   I+SG   GA+L+  G        +KG ++ PT+ 
Sbjct: 419 VTCGSEPDADLGPVISKQAKERICRLIQSGVDDGAKLLLDGRDIVVPGYEKGNFIGPTIL 478

Query: 75  ANVRDDMKIAREE 87
           + V  DM+  +EE
Sbjct: 479 SGVTPDMECYKEE 491

Length = 604

>gnl|CDD|143464 cd07146, ALDH_PhpJ, Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 27  TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIARE 86
           T  G  ID+E   +I   +E   +QGA+++ G  R   +G    PTV  +V  D ++  E
Sbjct: 298 TDMGTVIDEEAAIQIENRVEEAIAQGARVLLGNQR---QGALYAPTVLDHVPPDAELVTE 354

Query: 87  E 87
           E
Sbjct: 355 E 355

Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD. Length = 451

>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  GT+ G     E      + IE  KSQG +++ GG     +G +VQPT+   +  D  
Sbjct: 333 LEKGTLLGPLHTPESKKNFEKGIEIIKSQGGKILTGGSAIESEGNFVQPTI-VEISPDAD 391

Query: 83  IAREE 87
           + +EE
Sbjct: 392 VVKEE 396

Length = 508

>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase superfamily

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           +A VFT+DL++   V + LRAGT++
Sbjct: 301 TAGVFTRDLNRALRVAERLRAGTVY 325

The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer to the cofactor and formation of a thioacylenzyme intermediate. Hydrolysis of the thioacylenzyme and release of the carboxylic acid product occurs, and in most cases, the reduced cofactor dissociates from the enzyme. The evolutionary phylogenetic tree of ALDHs appears to have an initial bifurcation between what has been characterized as the classical aldehyde dehydrogenases, the ALDH family (ALDH) and extended family members or aldehyde dehydrogenase-like (ALDH-L) proteins. The ALDH proteins are represented by enzymes which share a number of highly conserved residues necessary for catalysis and cofactor binding and they include such proteins as retinal dehydrogenase, 10-formyltetrahydrofolate dehydrogenase, non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase, delta(1)-pyrroline-5-carboxylate dehydrogenases, alpha-ketoglutaric semialdehyde dehydrogenase, alpha-aminoadipic semialdehyde dehydrogenase, coniferyl aldehyde dehydrogenase and succinate-semialdehyde dehydrogenase. Included in this larger group are all human, Arabidopsis, Tortula, fungal, protozoan, and Drosophila ALDHs identified in families ALDH1 through ALDH22 with the exception of families ALDH18, ALDH19, and ALDH20 which are present in the ALDH-like group. The ALDH-like group is represented by such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group. Length = 367

>gnl|CDD|143436 cd07118, ALDH_SNDH, Gluconobacter oxydans L-sorbosone dehydrogenase-like

 Score = 34.2 bits (79), Expect = 0.003
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           SA V++KD+D    V + +RAGT+W
Sbjct: 389 SAGVWSKDIDTALTVARRIRAGTVW 413

Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase. Length = 454

>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family

 Score = 34.0 bits (79), Expect = 0.004
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           +A VFT DL++   V + L AG +W
Sbjct: 395 AAGVFTNDLERALRVARRLEAGMVW 419

This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor. The family includes the following members: The prototypical members are the aldehyde dehydrogenases EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This family also includes omega crystallin, an eye lens protein from squid and octopus that has little aldehyde dehydrogenase activity. Length = 459

>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like

 Score = 34.0 bits (79), Expect = 0.004
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLV--AGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           I++    ++   +E  +++GA+++     G        + PT+  NV DDM++ +EE
Sbjct: 282 INERHYARLQGLLEDARAKGARVIELNPAGEDFAATRKLPPTLVLNVTDDMRVMQEE 338

Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD. Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
KOG2450|consensus	501		99.83
PRK11241	482	gabD succinate-semialdehyde dehydrogenase I; Provi	99.81
cd07140	486	ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydroge	99.81
TIGR01780	448	SSADH succinate-semialdehyde dehydrogenase. SSADH	99.8
PLN02766	501	coniferyl-aldehyde dehydrogenase	99.79
cd07123	522	ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate	99.79
cd07141	481	ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydro	99.78
PLN02419	604	methylmalonate-semialdehyde dehydrogenase [acylati	99.78
cd07113	477	ALDH_PADH_NahF Escherichia coli NAD+-dependent phe	99.78
KOG2451|consensus	503		99.78
PRK09406	457	gabD1 succinic semialdehyde dehydrogenase; Reviewe	99.77
PRK10090	409	aldehyde dehydrogenase A; Provisional	99.77
TIGR01236	533	D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehy	99.77
TIGR03374	472	ABALDH 1-pyrroline dehydrogenase. Members of this	99.77
PLN02278	498	succinic semialdehyde dehydrogenase	99.76
TIGR03216	481	OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehy	99.76
PLN02466	538	aldehyde dehydrogenase family 2 member	99.76
cd07106	446	ALDH_AldA-AAD23400 Streptomyces aureofaciens putat	99.76
cd07559	480	ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dep	99.75
cd07085	478	ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrog	99.75
cd07130	474	ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic se	99.75
PLN02174	484	aldehyde dehydrogenase family 3 member H1	99.75
PRK13968	462	putative succinate semialdehyde dehydrogenase; Pro	99.75
cd07099	453	ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-di	99.75
TIGR02278	663	PaaN-DH phenylacetic acid degradation protein paaN	99.75
cd07142	476	ALDH_F2BC Arabidosis aldehyde dehydrogenase family	99.75
cd07100	429	ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succi	99.75
PRK13473	475	gamma-aminobutyraldehyde dehydrogenase; Provisiona	99.74
cd07097	473	ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent	99.74
cd07117	475	ALDH_StaphAldA1 Uncharacterized Staphylococcus aur	99.74
PLN02315	508	aldehyde dehydrogenase family 7 member	99.74
PRK13252	488	betaine aldehyde dehydrogenase; Provisional	99.74
cd07107	456	ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde	99.74
cd07091	476	ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families	99.74
COG1012	472	PutA NAD-dependent aldehyde dehydrogenases [Energy	99.74
cd07086	478	ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadip	99.74
cd07143	481	ALDH_AldA_AN0554 Aspergillus nidulans aldehyde deh	99.73
cd07088	468	ALDH_LactADH-AldA Escherichia coli lactaldehyde de	99.73
cd07110	456	ALDH_F10_BADH Arabidopsis betaine aldehyde dehydro	99.73
TIGR03250	472	PhnAcAld_DH putative phosphonoacetaldehyde dehydro	99.73
cd07148	455	ALDH_RL0313 Uncharacterized ALDH ( RL0313) with si	99.73
TIGR02299	488	HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyd	99.73
cd07115	453	ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxy	99.73
cd07089	459	ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric	99.73
cd07101	454	ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succi	99.73
cd07118	454	ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydr	99.73
PRK09407	524	gabD2 succinic semialdehyde dehydrogenase; Reviewe	99.73
cd07119	482	ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent be	99.73
PLN02467	503	betaine aldehyde dehydrogenase	99.72
cd07114	457	ALDH_DhaS Uncharacterized Candidatus pelagibacter	99.72
cd07120	455	ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde deh	99.72
cd07139	471	ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehy	99.72
cd07092	450	ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent g	99.72
cd07145	456	ALDH_LactADH_F420-Bios Methanocaldococcus jannasch	99.72
cd07112	462	ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent	99.71
cd07111	480	ALDH_F16 Aldehyde dehydrogenase family 16A1-like.	99.71
cd07108	457	ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent a	99.71
cd07095	431	ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde	99.71
TIGR01804	467	BADH glycine betaine aldehyde dehydrogenase. Betai	99.71
cd07090	457	ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobuty	99.71
cd07144	484	ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyd	99.7
PF00171	462	Aldedh: Aldehyde dehydrogenase family; InterPro: I	99.7
cd07098	465	ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and	99.7
cd07124	512	ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxyl	99.7
cd07138	466	ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric ac	99.7
cd07131	478	ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuen	99.7
cd07103	451	ALDH_F5_SSADH_GabD Mitochondrial succinate-semiald	99.7
cd07083	500	ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-	99.7
cd07102	452	ALDH_EDX86601 Uncharacterized aldehyde dehydrogena	99.7
cd07151	465	ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyd	99.7
PRK09457	487	astD succinylglutamic semialdehyde dehydrogenase;	99.7
cd07094	453	ALDH_F21_LactADH-like ALDH subfamily: NAD+-depende	99.7
cd07150	451	ALDH_VaniDH_like Pseudomonas putida vanillin dehyd	99.69
TIGR01237	511	D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehy	99.69
TIGR01722	477	MMSDH methylmalonic acid semialdehyde dehydrogenas	99.69
cd07116	479	ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependen	99.69
PRK11563	675	bifunctional aldehyde dehydrogenase/enoyl-CoA hydr	99.69
cd07152	443	ALDH_BenzADH NAD-dependent benzaldehyde dehydrogen	99.69
cd07146	451	ALDH_PhpJ Streptomyces putative phosphonoformaldeh	99.69
cd07128	513	ALDH_MaoC-N N-terminal domain of the monoamine oxi	99.68
cd07147	452	ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1	99.68
PRK09847	494	gamma-glutamyl-gamma-aminobutyraldehyde dehydrogen	99.67
cd07109	454	ALDH_AAS00426 Uncharacterized Saccharopolyspora sp	99.67
cd07137	432	ALDH_F3FHI Plant aldehyde dehydrogenase family 3 m	99.67
PLN02203	484	aldehyde dehydrogenase	99.67
PRK03137	514	1-pyrroline-5-carboxylate dehydrogenase; Provision	99.67
cd07134	433	ALDH_AlkH-like Pseudomonas putida Aldehyde dehydro	99.67
cd07104	431	ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependen	99.66
cd07093	455	ALDH_F8_HMSADH Human aldehyde dehydrogenase family	99.66
cd07082	473	ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylat	99.66
TIGR03240	484	arg_catab_astD succinylglutamic semialdehyde dehyd	99.65
KOG2454|consensus	583		99.65
cd07149	453	ALDH_y4uC Uncharacterized ALDH (y4uC) with similar	99.65
PLN00412	496	NADP-dependent glyceraldehyde-3-phosphate dehydrog	99.65
cd07133	434	ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-l	99.64
cd07135	436	ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde	99.63
PRK11903	521	aldehyde dehydrogenase; Provisional	99.63
cd07125	518	ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate d	99.6
cd07078	432	ALDH NAD(P)+ dependent aldehyde dehydrogenase fami	99.6
KOG2455|consensus	561		99.59
cd07105	432	ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-l	99.59
PTZ00381	493	aldehyde dehydrogenase family protein; Provisional	99.57
TIGR01238	500	D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehy	99.56
KOG2452|consensus	881		99.56
cd07136	449	ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydr	99.55
PRK11904	1038	bifunctional proline dehydrogenase/pyrroline-5-car	99.52
KOG2453|consensus	507		99.52
PRK11809	1318	putA trifunctional transcriptional regulator/proli	99.49
cd07132	443	ALDH_F3AB Aldehyde dehydrogenase family 3 members	99.49
PRK11905	1208	bifunctional proline dehydrogenase/pyrroline-5-car	99.46
KOG2456|consensus	477		99.46
cd07127	549	ALDH_PAD-PaaZ Phenylacetic acid degradation protei	99.43
cd07087	426	ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl	99.4
TIGR02288	551	PaaN_2 phenylacetic acid degradation protein paaN.	99.37
cd07126	489	ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate de	99.36
cd07084	442	ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent	99.18
cd07129	454	ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydr	99.12
cd07081	439	ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldeh	98.68
TIGR02518	488	EutH_ACDH acetaldehyde dehydrogenase (acetylating)	98.62
cd07121	429	ALDH_EutE Ethanolamine utilization protein EutE-li	98.41
COG4230	769	Delta 1-pyrroline-5-carboxylate dehydrogenase [Ene	98.31
PRK15398	465	aldehyde dehydrogenase EutE; Provisional	98.24
cd07122	436	ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydr	97.85
KOG2449|consensus	157		97.62
PRK13805	862	bifunctional acetaldehyde-CoA/alcohol dehydrogenas	97.52
cd07079	406	ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate redu	87.24
PLN02418	718	delta-1-pyrroline-5-carboxylate synthase	87.21

>KOG2450|consensus

Probab=99.83  E-value=1.9e-20  Score=129.83  Aligned_cols=85  Identities=46%  Similarity=0.701  Sum_probs=79.3

Q ss_pred             hhHHHHHHHHhhcc-ccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKT-NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~-~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|-+++++.+++ +++|||+++++..||+||+.|++||++|++.++++||++++||......|+||.|||+.|+.++|
T Consensus       315 ydefv~~~v~~a~~~~kvGdP~~~~~~qG~~i~~~q~ekI~~yi~~~k~eGa~l~~gG~~~g~~Gyfi~Ptv~~~v~~~m  394 (501)
T KOG2450|consen  315 YDEFVEKFVAAAKKKLKVGDPFDEGTEQGPQISKTQYEKILGYIESGKKEGATLLCGGVRLGDKGYFIKPTVFTNVTDDM  394 (501)
T ss_pred             HHHHHHHHHHHHhcccccCCCCCcccccccccCHHHHHHHHHHHHHHHhcCCEEEecCcccCCCceEECCeeccCCChhh
Confidence            57888899988855 99999999999999999999999999999999999999999997655689999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .|++||
T Consensus       395 ~i~~EE  400 (501)
T KOG2450|consen  395 RIAKEE  400 (501)
T ss_pred             hhhHhh
Confidence            999998

>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional

Probab=99.81  E-value=2.1e-19  Score=126.07  Aligned_cols=85  Identities=28%  Similarity=0.425  Sum_probs=78.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++|||||+.|++++.+++++++++|+++++||......|+|+.|||+.+++++|.
T Consensus       302 ~d~f~~~l~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~GG~~~~~~g~f~~Ptvl~~v~~~~~  381 (482)
T PRK11241        302 YDRFAEKLQQAVSKLHIGDGLEKGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHELGGNFFQPTILVDVPANAK  381 (482)
T ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCEEEecCCCCCCCCeEEeeEEEECCCCCCh
Confidence            58899999999999999999999999999999999999999999999999999999865423689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       382 i~~eE  386 (482)
T PRK11241        382 VAKEE  386 (482)
T ss_pred             hhhCc
Confidence            99998

>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L

Probab=99.81  E-value=1.8e-19  Score=126.48  Aligned_cols=85  Identities=34%  Similarity=0.504  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+++++||||||.+|++++.++|++++++|+++++||...+..|+|++|||+.++++++.
T Consensus       304 ~~~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gg~~~~~~g~~~~Ptvl~~~~~~~~  383 (486)
T cd07140         304 HDEFVRRVVEEVKKMKIGDPLDRSTDHGPQNHKAHLDKLVEYCERGVKEGATLVYGGKQVDRPGFFFEPTVFTDVEDHMF  383 (486)
T ss_pred             HHHHHHHHHHHHHhCCccCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCeeECCEEEeCCCCCCh
Confidence            58899999999999999999999999999999999999999999999999999999865334689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       384 i~~eE  388 (486)
T cd07140         384 IAKEE  388 (486)
T ss_pred             hhhCC
Confidence            99998

10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.

>TIGR01780 SSADH succinate-semialdehyde dehydrogenase

Probab=99.80  E-value=3.4e-19  Score=123.87  Aligned_cols=85  Identities=32%  Similarity=0.474  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++||||++.|++++.+++++++++|+++++||......|+|++|||+.+++++++
T Consensus       274 ~d~f~~~l~~~~~~l~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~il~gg~~~~~~g~~~~Ptvl~~~~~~~~  353 (448)
T TIGR01780       274 YDEFAKKLAEAVKKLKVGNGLDEGVTQGPLINEKAVEKVEKHIADAVEKGAKVVTGGKRHELGGNFFEPTVLSNVTQDML  353 (448)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeeEcCEEEecCCCCCh
Confidence            68899999999999999999999999999999999999999999999999999999965434689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       354 i~~eE  358 (448)
T TIGR01780       354 VAKEE  358 (448)
T ss_pred             HhhCC
Confidence            99998

SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).

>PLN02766 coniferyl-aldehyde dehydrogenase

Probab=99.79  E-value=8.8e-19  Score=123.39  Aligned_cols=85  Identities=39%  Similarity=0.684  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++|||||+++++++.++|++++.+|+++++||......|+|++|||+.+++++|+
T Consensus       315 ~d~f~~~l~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~  394 (501)
T PLN02766        315 YDEFVKKLVEKAKDWVVGDPFDPRARQGPQVDKQQFEKILSYIEHGKREGATLLTGGKPCGDKGYYIEPTIFTDVTEDMK  394 (501)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCCcCCCCCeEEeeEEEecCCCCCh
Confidence            68899999999999999999999999999999999999999999999999999999875434689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       395 i~~eE  399 (501)
T PLN02766        395 IAQDE  399 (501)
T ss_pred             hhhCC
Confidence            99998

>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17

Probab=99.79  E-value=1.1e-18  Score=123.40  Aligned_cols=85  Identities=26%  Similarity=0.413  Sum_probs=78.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHC-CCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQ-GAQLVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~-Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      +++|.++|++.++++++|+|.++++++|||||+++++++.++++++.++ |+++++||..+...|+|++|||+.+++++|
T Consensus       331 ~d~f~~~l~~~~~~l~~G~p~d~~t~~Gpli~~~~~~~v~~~v~~a~~~~Ga~vl~gg~~~~~~g~f~~PTvl~~v~~~~  410 (522)
T cd07123         331 WPEVKERLLEELKEIKMGDPDDFSNFMGAVIDEKAFDRIKGYIDHAKSDPEAEIIAGGKCDDSVGYFVEPTVIETTDPKH  410 (522)
T ss_pred             HHHHHHHHHHHHhhCccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEeCCCcCCCCCceEcCEEEeCCCCCC
Confidence            5889999999999999999999999999999999999999999999999 999999986543358999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .++++|
T Consensus       411 ~i~~eE  416 (522)
T cd07123         411 KLMTEE  416 (522)
T ss_pred             hhhhcC
Confidence            999998

Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.

>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like

Probab=99.78  E-value=1.9e-18  Score=121.04  Aligned_cols=85  Identities=47%  Similarity=0.740  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++||||++.|++++.+++++++++|+++++||...+..|+|+.|||+.+++++++
T Consensus       302 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~  381 (481)
T cd07141         302 YDEFVKRSVERAKKRVVGNPFDPKTEQGPQIDEEQFKKILELIESGKKEGAKLECGGKRHGDKGYFIQPTVFSDVTDDMR  381 (481)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeEEeeEEEecCCCCCh
Confidence            57899999999999999999999999999999999999999999999999999999976434689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       382 ~~~eE  386 (481)
T cd07141         382 IAKEE  386 (481)
T ss_pred             hhhcc
Confidence            99998

NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.

>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]

Probab=99.78  E-value=1.9e-18  Score=123.70  Aligned_cols=85  Identities=29%  Similarity=0.371  Sum_probs=78.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc----CCCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA----GDKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~----~~~g~~i~Ptii~~v~   78 (87)
                      +++|.++|++.++++++|+|.+++++|||||++.|++++..++++|+++|+++++||...    ...|+|++|||+.+++
T Consensus       403 ~d~f~e~l~~~~~~l~vG~p~d~~t~~GPlis~~~~~~v~~~i~~A~~~GAkvl~GG~~~~~~~~~~G~f~~PTVL~~v~  482 (604)
T PLN02419        403 AKSWEDKLVERAKALKVTCGSEPDADLGPVISKQAKERICRLIQSGVDDGAKLLLDGRDIVVPGYEKGNFIGPTILSGVT  482 (604)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCCccCCCCHHHHHHHHHHHHHHHhcCCEEEeCCccccCCCCCCCeEEeeEEEeCCC
Confidence            689999999999999999999999999999999999999999999999999999998642    1358999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      ++|.+++||
T Consensus       483 ~d~~i~~eE  491 (604)
T PLN02419        483 PDMECYKEE  491 (604)
T ss_pred             CCCHHHcCC
Confidence            999999998

>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like

Probab=99.78  E-value=2.3e-18  Score=120.53  Aligned_cols=85  Identities=21%  Similarity=0.457  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++.|||||++.|++++.++|++++++|+++++||......|+|+.|||+.++++++.
T Consensus       297 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~~l~gg~~~~~~g~~~~Ptvl~~v~~~~~  376 (477)
T cd07113         297 FDELVTKLKQALSSFQVGSPMDESVMFGPLANQPHFDKVCSYLDDARAEGDEIVRGGEALAGEGYFVQPTLVLARSADSR  376 (477)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCeeEeCEEEecCCCCCh
Confidence            58899999999999999999999999999999999999999999999999999999875433589999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       377 ~~~eE  381 (477)
T cd07113         377 LMREE  381 (477)
T ss_pred             HHhCC
Confidence            99998

NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.

>KOG2451|consensus

Probab=99.78  E-value=1.4e-18  Score=117.99  Aligned_cols=85  Identities=28%  Similarity=0.441  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCc-ccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG-RAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~-~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      ||.|..+|.++++++++|+++++++..|||||+.+.+++..+++||+.+|+++++||+ ..+...+|+.||||.|++++|
T Consensus       318 yD~Fv~~l~e~vkkl~vGdG~~~~tt~GpLIne~av~Kve~~v~DAvsKga~ii~GGk~~~~lg~~fyePTvl~~V~~~m  397 (503)
T KOG2451|consen  318 YDKFVSKLAEAVKKLKVGDGLDPGTTQGPLINEKAVEKVEKHVEDAVSKGAKIILGGKERSELGPTFYEPTVLSNVTQNM  397 (503)
T ss_pred             HHHHHHHHHHHHHheeccCCCCCCCccCCccCHHHHHHHHHHHHHHHhcCCeEEeCCeEccccCCccccceEeecCCccc
Confidence            6889999999999999999999999999999999999999999999999999999998 333456999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .+.+||
T Consensus       398 ~~s~eE  403 (503)
T KOG2451|consen  398 LVSSEE  403 (503)
T ss_pred             eeeccc
Confidence            999887

>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed

Probab=99.77  E-value=2.4e-18  Score=120.01  Aligned_cols=85  Identities=21%  Similarity=0.315  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++||+||+.+++++.++++++.++|+++++||...+..|+|++|||+.+++++|.
T Consensus       278 ~d~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~~~~~i~~a~~~Ga~~l~gg~~~~~~g~~~~Ptvl~~~~~~~~  357 (457)
T PRK09406        278 YDAFAEKFVARMAALRVGDPTDPDTDVGPLATEQGRDEVEKQVDDAVAAGATILCGGKRPDGPGWFYPPTVITDITPDMR  357 (457)
T ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCceEccEEeecCCCCCH
Confidence            58899999999999999999999999999999999999999999999999999999976434689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       358 ~~~eE  362 (457)
T PRK09406        358 LYTEE  362 (457)
T ss_pred             HhhCC
Confidence            99998

>PRK10090 aldehyde dehydrogenase A; Provisional

Probab=99.77  E-value=2.6e-18  Score=118.55  Aligned_cols=85  Identities=20%  Similarity=0.357  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCC-CCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRA-GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~-~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++++++|+|.+. ++++||||++.+++++.+++++++++|+++++||......|+|++|||+.++++++
T Consensus       227 ~~~f~~~l~~~~~~~~~G~p~~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~  306 (409)
T PRK10090        227 YDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVALGGKAVEGKGYYYPPTLLLDVRQEM  306 (409)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCcccCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeEEecEEEeCCCCCC
Confidence            58899999999999999999887 88999999999999999999999999999999997653458999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      +++++|
T Consensus       307 ~i~~eE  312 (409)
T PRK10090        307 SIMHEE  312 (409)
T ss_pred             HHHhCC
Confidence            999998

>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1

Probab=99.77  E-value=2.6e-18  Score=121.79  Aligned_cols=85  Identities=21%  Similarity=0.269  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCC--CeEEeCCcccCCCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQG--AQLVAGGGRAGDKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~G--a~i~~gg~~~~~~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+|.++++++||||++.|++++.++++++.++|  +++++||......|+|++||||.+++++
T Consensus       331 ~d~f~~~l~~~~~~l~~G~p~d~~t~~Gpli~~~~~~~v~~~i~~a~~~Ga~a~vl~GG~~~~~~G~~~~PTvl~~~~~d  410 (533)
T TIGR01236       331 WPRFKDELLAELAEVKVGDPDDFSNFMGAVIDERSFVKNVKYIERAKGDPAELTILYGGKYDDSEGYFVEPTVILSKDPT  410 (533)
T ss_pred             HHHHHHHHHHHHhcCCcCCCCCCCCcccccCCHHHHHHHHHHHHHHHhcCCceEEEeCCCcCCCCCeEEeeEEEecCCCC
Confidence            68899999999999999999999999999999999999999999999987  7999998754345899999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      |++++||
T Consensus       411 ~~i~~eE  417 (533)
T TIGR01236       411 DPLMVEE  417 (533)
T ss_pred             Chhhccc
Confidence            9999998

This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.

>TIGR03374 ABALDH 1-pyrroline dehydrogenase

Probab=99.77  E-value=3.7e-18  Score=119.50  Aligned_cols=85  Identities=19%  Similarity=0.330  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCC-CeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~G-a~i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++++++|+|.++++++||||+..+++++.++|++++++| +++++||......|+|+.|||+.+++++|
T Consensus       292 ~~~f~~~l~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~G~a~v~~gg~~~~~~g~~~~Ptvl~~v~~~~  371 (472)
T TIGR03374       292 YDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVMKAVEEAKALGHIKVITGGEKRKGNGYYFAPTLLAGAKQDD  371 (472)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCccCCCCCeEEeeEEEeCCCCCC
Confidence            58899999999999999999999999999999999999999999999999 79999987543458999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      ++++||
T Consensus       372 ~i~~eE  377 (472)
T TIGR03374       372 AIVQKE  377 (472)
T ss_pred             hhhhCC
Confidence            999998

Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.

>PLN02278 succinic semialdehyde dehydrogenase

Probab=99.76  E-value=4.7e-18  Score=119.65  Aligned_cols=85  Identities=28%  Similarity=0.436  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++||+|++.+++++..+|++++++|+++++||.....+|+|++|||+.+++++++
T Consensus       316 ~~~f~~~L~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gG~~~~~~g~~~~Ptvl~~v~~~~~  395 (498)
T PLN02278        316 YDKFAEAFSKAVQKLVVGDGFEEGVTQGPLINEAAVQKVESHVQDAVSKGAKVLLGGKRHSLGGTFYEPTVLGDVTEDML  395 (498)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCcCCCccCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCceEeeEEEecCCCCCh
Confidence            57899999999999999999999999999999999999999999999999999999875433589999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       396 ~~~~E  400 (498)
T PLN02278        396 IFREE  400 (498)
T ss_pred             hhhCC
Confidence            99998

>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase

Probab=99.76  E-value=5.9e-18  Score=118.62  Aligned_cols=85  Identities=26%  Similarity=0.397  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-----CCCceEeeEEEeeC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-----DKGFYVQPTVFANV   77 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-----~~g~~i~Ptii~~v   77 (87)
                      |++|.++|++.++++++|+|.++++.|||+|++.+++++.+++++++++|+++++||....     ..|+|++|||+.++
T Consensus       296 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~~~~g~~~~PTvl~~v  375 (481)
T TIGR03216       296 FDRFVAALKARAESLKIGVPDDPATNMGPLISAEHRDKVLSYYALAVEEGATVVTGGGVPDFGDALAGGAWVQPTIWTGL  375 (481)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcccccccCCCCceEccEEEeCC
Confidence            5789999999999999999999999999999999999999999999999999999986431     25899999999999


Q ss_pred             CCCCcchhcC
Q psy5845          78 RDDMKIAREE   87 (87)
Q Consensus        78 ~~~~~i~~eE   87 (87)
                      +++++++++|
T Consensus       376 ~~~~~i~~eE  385 (481)
T TIGR03216       376 PDSARVVTEE  385 (481)
T ss_pred             CCCCHHHhCC
Confidence            9999999998

Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.

>PLN02466 aldehyde dehydrogenase family 2 member

Probab=99.76  E-value=7.2e-18  Score=119.67  Aligned_cols=85  Identities=44%  Similarity=0.695  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.+.++++|+|.+.++++||+|++.+++++.+++++++++|+++++||...+..|+|++|||+.++++++.
T Consensus       352 ~d~f~~~l~~~~~~~~vG~p~~~~~~~Gpli~~~~~~~v~~~v~~a~~~Ga~v~~gg~~~~~~g~~i~Ptvl~~v~~d~~  431 (538)
T PLN02466        352 YDEFVEKAKARALKRVVGDPFKKGVEQGPQIDSEQFEKILRYIKSGVESGATLECGGDRFGSKGYYIQPTVFSNVQDDML  431 (538)
T ss_pred             HHHHHHHHHHHHHhccCCCCccCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEecCCcCCCCceEEEEEEEecCCCCCc
Confidence            57788888888889999999999999999999999999999999999999999999876434689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       432 i~~eE  436 (538)
T PLN02466        432 IAQDE  436 (538)
T ss_pred             hhcCC
Confidence            99998

>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like

Probab=99.76  E-value=7.1e-18  Score=117.17  Aligned_cols=85  Identities=31%  Similarity=0.520  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+.++++||+|++.+++++.++++++..+|+++++||......|+|++|||+.++++++.
T Consensus       268 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~i~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~  347 (446)
T cd07106         268 YDEFCEALVALAKAAVVGDGLDPGTTLGPVQNKMQYDKVKELVEDAKAKGAKVLAGGEPLDGPGYFIPPTIVDDPPEGSR  347 (446)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeeEcCEEEeCCCCCCH
Confidence            68899999999999999999999999999999999999999999999999999999976434589999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       348 i~~~E  352 (446)
T cd07106         348 IVDEE  352 (446)
T ss_pred             HHhcC
Confidence            99998

Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.

>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like

Probab=99.75  E-value=9.8e-18  Score=117.55  Aligned_cols=85  Identities=31%  Similarity=0.562  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.++++++||||++++++++.+++++++++|+++++||....    ..|+|++|||+.+++
T Consensus       296 ~d~f~~~l~~~~~~l~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~~~g~~~~Ptvl~~~~  375 (480)
T cd07559         296 YDEFIERAVERFEAIKVGNPLDPETMMGAQVSKDQLEKILSYVDIGKEEGAEVLTGGERLTLGGLDKGYFYEPTLIKGGN  375 (480)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCccccCCCCcEECeEEEeCCC
Confidence            5889999999999999999999999999999999999999999999999999999986532    358999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      +++.++++|
T Consensus       376 ~~~~~~~eE  384 (480)
T cd07559         376 NDMRIFQEE  384 (480)
T ss_pred             CCCcHHhcC
Confidence            999999998

Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.

>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2

Probab=99.75  E-value=9.3e-18  Score=117.51  Aligned_cols=85  Identities=33%  Similarity=0.395  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++|+++++||....    .+|+|+.|||+.+++
T Consensus       291 ~~~f~~~L~~~~~~l~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~l~gg~~~~~~~~~~g~~~~Ptvl~~~~  370 (478)
T cd07085         291 ADEWIPKLVERAKKLKVGAGDDPGADMGPVISPAAKERIEGLIESGVEEGAKLVLDGRGVKVPGYENGNFVGPTILDNVT  370 (478)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCcCCCCeEEcCEEEecCC
Confidence            6889999999999999999999999999999999999999999999999999999986421    358999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      +++.++++|
T Consensus       371 ~~~~~~~eE  379 (478)
T cd07085         371 PDMKIYKEE  379 (478)
T ss_pred             CCChhhhCc
Confidence            999999988

Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.

>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B

Probab=99.75  E-value=1.2e-17  Score=116.95  Aligned_cols=84  Identities=31%  Similarity=0.418  Sum_probs=76.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+.++++||||++.+++++.+++++++++|+++++||...+..|+|++|||+.++++ |.
T Consensus       291 ~d~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~PTvl~~~~~-~~  369 (474)
T cd07130         291 YDEVLERLKKAYKQVRIGDPLDDGTLVGPLHTKAAVDNYLAAIEEAKSQGGTVLFGGKVIDGPGNYVEPTIVEGLSD-AP  369 (474)
T ss_pred             HHHHHHHHHHHHhcCCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCCCeEEccEEEecCCC-CH
Confidence            58899999999999999999998899999999999999999999999999999999975434689999999998876 99


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       370 i~~eE  374 (474)
T cd07130         370 IVKEE  374 (474)
T ss_pred             HHhCC
Confidence            99998

Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.

>PLN02174 aldehyde dehydrogenase family 3 member H1

Probab=99.75  E-value=1.1e-17  Score=117.43  Aligned_cols=82  Identities=18%  Similarity=0.272  Sum_probs=74.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|++.++++++|+|.+ ++++|||||+.|++++.++|+++ .+|+++++||..+ ..|+|++|||+.+++++|.
T Consensus       266 ~d~f~~~l~~~~~~~~~G~p~~-~~~~Gpli~~~~~~~v~~~i~~a-~~ga~~~~GG~~~-~~g~~~~PTvl~~v~~~~~  342 (484)
T PLN02174        266 APKVIDAMKKELETFYGKNPME-SKDMSRIVNSTHFDRLSKLLDEK-EVSDKIVYGGEKD-RENLKIAPTILLDVPLDSL  342 (484)
T ss_pred             HHHHHHHHHHHHHhhcCCCCcc-cCCcCCCCCHHHHHHHHHHHHHH-HcCCEEEECCCcC-CCCCEEEEEEEecCCCCCh
Confidence            4788899999999999999977 78999999999999999999998 7899999998654 4689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       343 i~~eE  347 (484)
T PLN02174        343 IMSEE  347 (484)
T ss_pred             hhcCC
Confidence            99998

>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional

Probab=99.75  E-value=1.3e-17  Score=116.59  Aligned_cols=85  Identities=24%  Similarity=0.269  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+.++.+||+++..+++++..++++++.+|+++++||......|+|++|||+.++++++.
T Consensus       281 ~~~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~~~~g~~~~Ptvl~~v~~~~~  360 (462)
T PRK13968        281 ASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHHQVEATLAEGARLLLGGEKIAGAGNYYAPTVLANVTPEMT  360 (462)
T ss_pred             HHHHHHHHHHHHhcCCcCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCceEECCEEEeCCCCCCh
Confidence            68899999999999999999999999999999999999999999999999999999875433589999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       361 ~~~eE  365 (462)
T PRK13968        361 AFREE  365 (462)
T ss_pred             HHhCC
Confidence            99998

>cd07099 ALDH_DDALDH Methylomonas sp

Probab=99.75  E-value=1.2e-17  Score=116.07  Aligned_cols=85  Identities=21%  Similarity=0.326  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++|+++++||......|+|++|||+.++++++.
T Consensus       273 ~d~f~~~l~~~~~~l~~G~~~~~~~~~gp~i~~~~~~~~~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptil~~~~~~~~  352 (453)
T cd07099         273 YDEFVARLVAKARALRPGADDIGDADIGPMTTARQLDIVRRHVDDAVAKGAKALTGGARSNGGGPFYEPTVLTDVPHDMD  352 (453)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCcccCCcCHHHHHHHHHHHHHHHhCCCEEEeCCCcCCCCCeEEecEEEecCCCCCH
Confidence            57899999999999999999999999999999999999999999999999999999875423689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       353 ~~~~E  357 (453)
T cd07099         353 VMREE  357 (453)
T ss_pred             HHhCC
Confidence            99988

4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.

>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN

Probab=99.75  E-value=9.1e-18  Score=121.43  Aligned_cols=84  Identities=14%  Similarity=0.103  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC-
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM-   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~-   81 (87)
                      |++|.++|++.++++++|+|.+.++++|||||+.+++++.+++++++++|+++++||..+ ..|+|++|||+.++++++ 
T Consensus       305 ~d~f~~~l~~~~~~l~vG~p~~~~t~~Gpli~~~~~~~i~~~i~~a~~~Ga~vl~GG~~~-~~g~~~~PTvl~~~~~~~~  383 (663)
T TIGR02278       305 LEAVLKALQARLAKVVLGDPREEGVDMGPLVSLEQRADVEAAVAALLAAGAEVRLGGPGR-LDGAFFPPTLLLAEDPWAG  383 (663)
T ss_pred             HHHHHHHHHHHHHhccCCCccccCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCcC-CCCeeEccEEEeeCCcchh
Confidence            588999999999999999999999999999999999999999999999999999998654 358999999999988875 


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .++++|
T Consensus       384 ~i~~eE  389 (663)
T TIGR02278       384 AVHATE  389 (663)
T ss_pred             hHHhcc
Confidence            789887

This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.

>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like

Probab=99.75  E-value=1.2e-17  Score=116.97  Aligned_cols=85  Identities=46%  Similarity=0.792  Sum_probs=78.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++.+||+|++.+++++.+++++++++|+++++||......|+|+.|||+.+++++++
T Consensus       298 ~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~~v~~~v~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~  377 (476)
T cd07142         298 YDEFVEKAKARALKRVVGDPFRKGVEQGPQVDKEQFEKILSYIEHGKEEGATLITGGDRIGSKGYYIQPTIFSDVKDDMK  377 (476)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCcCCcCcCHHHHHHHHHHHHHHHhCCCEEEecCCcCCCCCeeEccEEeecCCCCCh
Confidence            57888899999999999999999999999999999999999999999999999999876434689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       378 i~~eE  382 (476)
T cd07142         378 IARDE  382 (476)
T ss_pred             hhhCC
Confidence            99998

Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.

>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like

Probab=99.75  E-value=1.3e-17  Score=115.57  Aligned_cols=85  Identities=25%  Similarity=0.291  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++||++++.+++++.+++++++++|+++++||......|+|++|||+.+++++++
T Consensus       251 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~Ptv~~~~~~~~~  330 (429)
T cd07100         251 YDEFLEKFVEAMAALKVGDPMDEDTDLGPLARKDLRDELHEQVEEAVAAGATLLLGGKRPDGPGAFYPPTVLTDVTPGMP  330 (429)
T ss_pred             HHHHHHHHHHHHHhccCCCCccCCCCccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeEEcCEEeecCCCCCH
Confidence            57889999999999999999999999999999999999999999999999999999875433589999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       331 ~~~eE  335 (429)
T cd07100         331 AYDEE  335 (429)
T ss_pred             HHhCC
Confidence            99998

Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.

>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional

Probab=99.74  E-value=1.4e-17  Score=116.54  Aligned_cols=85  Identities=27%  Similarity=0.408  Sum_probs=78.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCC-CeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~G-a~i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++++++|+|.++++++||||++.+++++.++++++.++| +++++||......|+|++|||+.++++++
T Consensus       293 ~d~f~~~l~~~~~~l~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~G~a~v~~gg~~~~~~g~~~~Ptvl~~~~~~~  372 (475)
T PRK13473        293 YDDLVAKLAAAVATLKVGDPDDEDTELGPLISAAHRDRVAGFVERAKALGHIRVVTGGEAPDGKGYYYEPTLLAGARQDD  372 (475)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEECCCcCCCCceeEcCEEEecCCCCC
Confidence            58899999999999999999999999999999999999999999999999 99999997643358999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .++++|
T Consensus       373 ~~~~eE  378 (475)
T PRK13473        373 EIVQRE  378 (475)
T ss_pred             hhhhCC
Confidence            999998

>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like

Probab=99.74  E-value=1.5e-17  Score=116.35  Aligned_cols=85  Identities=38%  Similarity=0.585  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+|.++++++|||+++.+++++.+++++++++|+++++||....  ..|+|++|||+.+++++
T Consensus       291 ~d~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~g~~~~Ptvl~~~~~~  370 (473)
T cd07097         291 HDRFVEALVERTKALKVGDALDEGVDIGPVVSERQLEKDLRYIEIARSEGAKLVYGGERLKRPDEGYYLAPALFAGVTND  370 (473)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCCCeEEeeEEeccCCCC
Confidence            5889999999999999999999999999999999999999999999999999999986532  25789999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      +.++++|
T Consensus       371 ~~~~~eE  377 (473)
T cd07097         371 MRIAREE  377 (473)
T ss_pred             ChhhhCC
Confidence            9999998

Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.

>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like

Probab=99.74  E-value=1.4e-17  Score=116.68  Aligned_cols=85  Identities=35%  Similarity=0.643  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.++++.+||+|++.+++++.+++++++++|+++++||....    ..|+|++|||+.+++
T Consensus       291 ~d~f~~~l~~~~~~l~~g~p~~~~~~~gpli~~~~~~~v~~~v~~a~~~Ga~v~~gg~~~~~~~~~~g~~~~Ptvl~~~~  370 (475)
T cd07117         291 YDEFVAKLKEKFENVKVGNPLDPDTQMGAQVNKDQLDKILSYVDIAKEEGAKILTGGHRLTENGLDKGFFIEPTLIVNVT  370 (475)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCcccCcCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCccccCCCCeEEeeEEeecCC
Confidence            5889999999999999999999999999999999999999999999999999999986532    258999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      ++++++++|
T Consensus       371 ~~~~i~~eE  379 (475)
T cd07117         371 NDMRVAQEE  379 (475)
T ss_pred             CCChhhhCC
Confidence            999999998

Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.

>PLN02315 aldehyde dehydrogenase family 7 member

Probab=99.74  E-value=1.5e-17  Score=117.44  Aligned_cols=84  Identities=26%  Similarity=0.373  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++.+||||+..+++++.+++++++++|+++++||...+..|+|++|||+ +++++|.
T Consensus       313 ~d~f~~~l~~~~~~l~vG~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gG~~~~~~g~~~~Ptvl-~v~~~~~  391 (508)
T PLN02315        313 YDDVLEQLLTVYKQVKIGDPLEKGTLLGPLHTPESKKNFEKGIEIIKSQGGKILTGGSAIESEGNFVQPTIV-EISPDAD  391 (508)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCCCeEEecEEE-ecCCCCh
Confidence            688999999999999999999999999999999999999999999999999999998754346899999999 6999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       392 i~~eE  396 (508)
T PLN02315        392 VVKEE  396 (508)
T ss_pred             HHhCC
Confidence            99998

>PRK13252 betaine aldehyde dehydrogenase; Provisional

Probab=99.74  E-value=1.4e-17  Score=116.90  Aligned_cols=85  Identities=33%  Similarity=0.518  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.++++++|||||+.+++++.+++++++++|+++++||....    ..|+|++|||+.+++
T Consensus       297 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~~~~~~~~g~~~~Ptvl~~v~  376 (488)
T PRK13252        297 KAAFEARLLERVERIRIGDPMDPATNFGPLVSFAHRDKVLGYIEKGKAEGARLLCGGERLTEGGFANGAFVAPTVFTDCT  376 (488)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCeEEccEEeccCC
Confidence            5889999999999999999999999999999999999999999999999999999986421    258999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      ++++++++|
T Consensus       377 ~~~~i~~eE  385 (488)
T PRK13252        377 DDMTIVREE  385 (488)
T ss_pred             CCChHhhCC
Confidence            999999998

>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like

Probab=99.74  E-value=1.6e-17  Score=115.70  Aligned_cols=85  Identities=38%  Similarity=0.642  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.++++++|||+++.+++++.+++++++++|+++++||....    ..|+|++|||+.+++
T Consensus       272 ~d~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~PTvl~~v~  351 (456)
T cd07107         272 YDEVLARVVERVAAIKVGDPTDPATTMGPLVSRQQYDRVMHYIDSAKREGARLVTGGGRPEGPALEGGFYVEPTVFADVT  351 (456)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCcCcccCHHHHHHHHHHHHHHHHCCCEEEeCCCccccccCCCCceECCEEEECCC
Confidence            5889999999999999999999999999999999999999999999999999999986431    358999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      +++++++||
T Consensus       352 ~~~~i~~eE  360 (456)
T cd07107         352 PGMRIAREE  360 (456)
T ss_pred             CCChhhhCC
Confidence            999999998

Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.

>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins

Probab=99.74  E-value=2e-17  Score=115.80  Aligned_cols=85  Identities=45%  Similarity=0.738  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++.+||+++..+++++.++++++.++|+++++||..+...|+|++|||+.++++++.
T Consensus       298 ~~~f~~~L~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~ga~vl~gg~~~~~~~~~~~Ptvl~~v~~~~~  377 (476)
T cd07091         298 YDEFVEKFKARAEKRVVGDPFDPDTFQGPQVSKAQFDKILSYIESGKKEGATLLTGGERHGSKGYFIQPTVFTDVKDDMK  377 (476)
T ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCceECcEEecCCCCCCh
Confidence            57889999999999999999999999999999999999999999999999999999876534689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       378 ~~~eE  382 (476)
T cd07091         378 IAKEE  382 (476)
T ss_pred             hhhCC
Confidence            99998

ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co

>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]

Probab=99.74  E-value=1.8e-17  Score=116.15  Aligned_cols=82  Identities=35%  Similarity=0.556  Sum_probs=74.6

Q ss_pred             hhHHHHHHHHhhcc-ccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKT-NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~-~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      |+.|.++|+++ ++ +++||+.++.+++|||||+.|++++.++|++++++|++++.||... . |+|++|||+.+++++|
T Consensus       289 ~d~f~~~l~~~-~~~l~~Gd~~d~~t~~Gpli~~~~~~~v~~~i~~a~~~G~~~~~Gg~~~-~-g~~~~PTv~~~v~~~~  365 (472)
T COG1012         289 YDEFVERLVAR-AASLKVGDPLDPSTDLGPLISEEQLDRVEGYIEDAVAEGARLLAGGKRP-G-GYFVEPTILEGVTPDM  365 (472)
T ss_pred             HHHHHHHHHHH-HhcCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCEEEeCCcCC-C-CeEECCEEEecCCCCC
Confidence            57888999988 65 8899877889999999999999999999999999999999988733 3 9999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .+++||
T Consensus       366 ~i~~eE  371 (472)
T COG1012         366 RIAREE  371 (472)
T ss_pred             hhhhcc
Confidence            999998

>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins

Probab=99.74  E-value=2.2e-17  Score=115.72  Aligned_cols=85  Identities=33%  Similarity=0.482  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCC--CCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD--KGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~--~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+|.+.++.+||++++.+++++.+++++++++|+++++||.....  .|+|++|||+.+++++
T Consensus       292 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~g~~~~Ptvl~~~~~~  371 (478)
T cd07086         292 YDEFLERLVKAYKQVRIGDPLDEGTLVGPLINQAAVEKYLNAIEIAKSQGGTVLTGGKRIDGGEPGNYVEPTIVTGVTDD  371 (478)
T ss_pred             HHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCeEEccEEecCCCCC
Confidence            58899999999999999999999999999999999999999999999999999999875422  5889999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      +.++++|
T Consensus       372 ~~~~~eE  378 (478)
T cd07086         372 ARIVQEE  378 (478)
T ss_pred             ChhhcCC
Confidence            9999998

ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).

>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like

Probab=99.73  E-value=2.6e-17  Score=115.50  Aligned_cols=85  Identities=34%  Similarity=0.646  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|++.++++++|+|.+++++|||+|++.+++++.++|++++++|+++++||......|+|+.|||+.++++++.
T Consensus       301 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~  380 (481)
T cd07143         301 YDKFVKRFKEKAKKLKVGDPFAEDTFQGPQVSQIQYERIMSYIESGKAEGATVETGGKRHGNEGYFIEPTIFTDVTEDMK  380 (481)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCCCCCCCceEEeeEEEecCCCCCh
Confidence            57899999999999999999999999999999999999999999999999999999876434689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       381 ~~~eE  385 (481)
T cd07143         381 IVKEE  385 (481)
T ss_pred             hhhcC
Confidence            99998

NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.

>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like

Probab=99.73  E-value=2.5e-17  Score=114.94  Aligned_cols=85  Identities=33%  Similarity=0.520  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++++++|+|.++++.+||+|++.+++++.+++++++++|+++++||.... ..|+|++|||+.++++++
T Consensus       289 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~vl~gg~~~~~~~g~~~~Ptvl~~~~~~~  368 (468)
T cd07088         289 YDEFMEKLVEKMKAVKVGDPFDAATDMGPLVNEAALDKVEEMVERAVEAGATLLTGGKRPEGEKGYFYEPTVLTNVRQDM  368 (468)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCccCcccCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCceeEcCEEEecCCCCC
Confidence            5789999999999999999999899999999999999999999999999999999987542 358999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .++++|
T Consensus       369 ~~~~~E  374 (468)
T cd07088         369 EIVQEE  374 (468)
T ss_pred             chhhCC
Confidence            999998

Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.

>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like

Probab=99.73  E-value=2.1e-17  Score=115.09  Aligned_cols=85  Identities=35%  Similarity=0.570  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++|+++++||....  ..++|+.|||+.+++++
T Consensus       276 ~d~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~~~~~~v~~a~~~Ga~~~~gg~~~~~~~~~~~~~Ptvl~~v~~~  355 (456)
T cd07110         276 ADAFLERLATAAEAIRVGDPLEEGVRLGPLVSQAQYEKVLSFIARGKEEGARLLCGGRRPAHLEKGYFIAPTVFADVPTD  355 (456)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCCcccccCCCCcCCCEEEecCCCC
Confidence            6889999999999999999999999999999999999999999999999999999987542  35889999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      +.++++|
T Consensus       356 ~~i~~~E  362 (456)
T cd07110         356 SRIWREE  362 (456)
T ss_pred             ChHhhCC
Confidence            9999998

Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.

>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase

Probab=99.73  E-value=2.3e-17  Score=115.47  Aligned_cols=82  Identities=22%  Similarity=0.243  Sum_probs=76.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++.+|||+++++++++.+++++++++|+++++||..   .|+|++||||.+++++|+
T Consensus       293 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~vl~gg~~---~g~~~~PTvl~~v~~~~~  369 (472)
T TIGR03250       293 ADRFTELLVEKTRAWRYGDPMDPSVDMGTVIDEAAAILFEARVNEAIAQGARLLLGNVR---DGALYAPTVLDRVDPSMT  369 (472)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCc---CCEEEcCEEEeCCCCCCh
Confidence            57889999999999999999999999999999999999999999999999999999864   488999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       370 i~~eE  374 (472)
T TIGR03250       370 LVREE  374 (472)
T ss_pred             HHhCC
Confidence            99998

It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.

>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1

Probab=99.73  E-value=2.8e-17  Score=114.61  Aligned_cols=83  Identities=23%  Similarity=0.283  Sum_probs=77.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+.++.+|||+++.+++++.+++++++++|+++++||...  .++|++|||+.+++++++
T Consensus       278 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~--~~~~~~Ptvl~~~~~~~~  355 (455)
T cd07148         278 ADDFAQRLAAAAEKLVVGDPTDPDTEVGPLIRPREVDRVEEWVNEAVAAGARLLCGGKRL--SDTTYAPTVLLDPPRDAK  355 (455)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccC--CCCeEcCEEEeCCCCCCH
Confidence            578999999999999999999999999999999999999999999999999999998764  478999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       356 ~~~eE  360 (455)
T cd07148         356 VSTQE  360 (455)
T ss_pred             HHhCC
Confidence            99998

Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.

>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase

Probab=99.73  E-value=3.2e-17  Score=115.04  Aligned_cols=85  Identities=32%  Similarity=0.468  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-------CCCceEeeEEEe
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-------DKGFYVQPTVFA   75 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-------~~g~~i~Ptii~   75 (87)
                      |++|.++|++.++++++|+|.++++.+|||||+.+++++.+++++++++|+++++||....       ..|+|++|||+.
T Consensus       291 ~d~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~~~~~~g~~~~Ptvl~  370 (488)
T TIGR02299       291 AEDFVEKLVERVRAIRVGHPLDPETEVGPLIHPEHLAKVLGYVEAAEKEGATILVGGERAPTFRGEDLGRGNYVLPTVFT  370 (488)
T ss_pred             HHHHHHHHHHHHhhCCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccCcccccccCCCCeEEccEEEe
Confidence            6889999999999999999999999999999999999999999999999999999986531       248899999999


Q ss_pred             eCCCCCcchhcC
Q psy5845          76 NVRDDMKIAREE   87 (87)
Q Consensus        76 ~v~~~~~i~~eE   87 (87)
                      ++++++.++++|
T Consensus       371 ~~~~~~~i~~eE  382 (488)
T TIGR02299       371 GADNHMRIAQEE  382 (488)
T ss_pred             cCCCCCchhhCC
Confidence            999999999998

This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.

>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like

Probab=99.73  E-value=3.6e-17  Score=113.85  Aligned_cols=85  Identities=33%  Similarity=0.640  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++|+++++||..+...|+|++|||+.+++++++
T Consensus       273 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~~~~~~~  352 (453)
T cd07115         273 YDEFLERFTSLARSLRPGDPLDPKTQMGPLVSQAQFDRVLDYVDVGREEGARLLTGGKRPGARGFFVEPTIFAAVPPEMR  352 (453)
T ss_pred             HHHHHHHHHHHHhcCCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCceECCEEEecCCCCCh
Confidence            57899999999999999999999999999999999999999999999999999999875433688999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       353 ~~~eE  357 (453)
T cd07115         353 IAQEE  357 (453)
T ss_pred             HhhCC
Confidence            99998

4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.

>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins

Probab=99.73  E-value=3.6e-17  Score=114.11  Aligned_cols=85  Identities=40%  Similarity=0.666  Sum_probs=78.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+|.+.++.+||+|+..+++++.+++++++++|+++++||....  ..|+|++|||+.+++++
T Consensus       279 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gp~i~~~~~~~v~~~i~~a~~~Ga~~l~gg~~~~~~~~g~~~~Ptvl~~~~~~  358 (459)
T cd07089         279 YDEVVEALAAAFEALPVGDPADPGTVMGPLISAAQRDRVEGYIARGRDEGARLVTGGGRPAGLDKGFYVEPTLFADVDND  358 (459)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCeEECCEEEEcCCCC
Confidence            5889999999999999999999999999999999999999999999999999999987542  26899999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      ++++++|
T Consensus       359 ~~~~~eE  365 (459)
T cd07089         359 MRIAQEE  365 (459)
T ss_pred             CHHHhCC
Confidence            9999998

The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.

>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like

Probab=99.73  E-value=3.7e-17  Score=113.84  Aligned_cols=85  Identities=22%  Similarity=0.371  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++++++|+|.+.++++|||+|+++++|+..++++++++|+++++||.... ..++|++|||+.++++++
T Consensus       272 ~d~f~~~L~~~~~~~~~G~~~~~~~~~gpli~~~~~~~v~~~v~~a~~~Ga~vl~gg~~~~~~~~~~~~Ptvl~~v~~~~  351 (454)
T cd07101         272 YDEFVRRFVARTRALRLGAALDYGPDMGSLISQAQLDRVTAHVDDAVAKGATVLAGGRARPDLGPYFYEPTVLTGVTEDM  351 (454)
T ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCCeEEcCEEEeCCCCCC
Confidence            5789999999999999999999999999999999999999999999999999999986432 257999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .++++|
T Consensus       352 ~~~~eE  357 (454)
T cd07101         352 ELFAEE  357 (454)
T ss_pred             HHHhCC
Confidence            999998

Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).

>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like

Probab=99.73  E-value=3.8e-17  Score=113.92  Aligned_cols=85  Identities=33%  Similarity=0.538  Sum_probs=78.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++++++|+|.+.++++||++++.+++++.+++++++++|+++++||.... ..|+|++|||+.+++.++
T Consensus       275 ~d~f~~~L~~~~~~l~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~g~~~~Ptvl~~~~~~~  354 (454)
T cd07118         275 ADAFVAAVVARSRKVRVGDPLDPETKVGAIINEAQLAKITDYVDAGRAEGATLLLGGERLASAAGLFYQPTIFTDVTPDM  354 (454)
T ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCeEEeCEEEeCCCCCC
Confidence            5789999999999999999999899999999999999999999999999999999997643 358999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .++++|
T Consensus       355 ~~~~eE  360 (454)
T cd07118         355 AIAREE  360 (454)
T ss_pred             HHHhCC
Confidence            999998

Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.

>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed

Probab=99.73  E-value=3.7e-17  Score=115.69  Aligned_cols=85  Identities=22%  Similarity=0.347  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++++++|+|.++++.+|||||+.+++++..++++++++|+++++||.... ..|+|+.|||+.++++++
T Consensus       308 ~d~f~~~L~~~~~~l~~G~~~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~vl~gG~~~~~~~g~~~~Ptvl~~v~~~~  387 (524)
T PRK09407        308 YDEFVRAFVAAVRAMRLGAGYDYSADMGSLISEAQLETVSAHVDDAVAKGATVLAGGKARPDLGPLFYEPTVLTGVTPDM  387 (524)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCcCCccCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCceEeCEEEeCCCCCC
Confidence            6889999999999999999999999999999999999999999999999999999986432 247999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .++++|
T Consensus       388 ~i~~eE  393 (524)
T PRK09407        388 ELAREE  393 (524)
T ss_pred             hHHhCC
Confidence            999998

>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like

Probab=99.73  E-value=3.8e-17  Score=114.49  Aligned_cols=85  Identities=35%  Similarity=0.597  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++|+++++||....    ..|+|++|||+.+++
T Consensus       290 ~d~f~~~l~~~~~~~~~G~~~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~~~~~g~~~~Ptvl~~~~  369 (482)
T cd07119         290 HDKFVAALAERAKKIKLGNGLDADTEMGPLVSAEHREKVLSYIQLGKEEGARLVCGGKRPTGDELAKGYFVEPTIFDDVD  369 (482)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccCCCCceECCEEEecCC
Confidence            5789999999999999999999999999999999999999999999999999999986532    258999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      +++.++++|
T Consensus       370 ~~~~i~~eE  378 (482)
T cd07119         370 RTMRIVQEE  378 (482)
T ss_pred             CCChHhhCC
Confidence            999999998

Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.

>PLN02467 betaine aldehyde dehydrogenase

Probab=99.72  E-value=4.4e-17  Score=114.89  Aligned_cols=85  Identities=32%  Similarity=0.540  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+|.++++.+|||+++.+++++.+++++++++|+++++||....  ..|+|++|||+.+++++
T Consensus       307 ~d~f~~~l~~~~~~l~~g~p~~~~~~~Gpli~~~~~~~v~~~v~~a~~~Ga~vl~gG~~~~~~~~g~~~~Ptvl~~v~~~  386 (503)
T PLN02467        307 ASEFLEKLVKWAKNIKISDPLEEGCRLGPVVSEGQYEKVLKFISTAKSEGATILCGGKRPEHLKKGFFIEPTIITDVTTS  386 (503)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCCCCCCCCCeEEeeEEEeCCCCC
Confidence            6889999999999999999999999999999999999999999999999999999986532  25899999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      +.++++|
T Consensus       387 ~~i~~eE  393 (503)
T PLN02467        387 MQIWREE  393 (503)
T ss_pred             ChHhhCC
Confidence            9999998

>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like

Probab=99.72  E-value=5.6e-17  Score=113.01  Aligned_cols=85  Identities=26%  Similarity=0.498  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.+.++++|||+++.+++++.+++++++++|+++++||....    ..|+|++|||+.+++
T Consensus       275 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~~l~gg~~~~~~~~~~g~~~~Ptvl~~~~  354 (457)
T cd07114         275 YDEFVERLVARARAIRVGDPLDPETQMGPLATERQLEKVERYVARAREEGARVLTGGERPSGADLGAGYFFEPTILADVT  354 (457)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCccccccCCCCCEECCEEEeCCC
Confidence            5789999999999999999999999999999999999999999999999999999986542    247999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      +++.++++|
T Consensus       355 ~~~~~~~~E  363 (457)
T cd07114         355 NDMRIAQEE  363 (457)
T ss_pred             CCChhhhcC
Confidence            999999988

Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.

>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like

Probab=99.72  E-value=5.4e-17  Score=113.24  Aligned_cols=85  Identities=25%  Similarity=0.334  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCCceEeeEEEeeCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRD   79 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g~~i~Ptii~~v~~   79 (87)
                      |++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++|+++++||....   ..|+|++|||+.++++
T Consensus       274 ~~~f~~~l~~~~~~l~~G~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~~~~~g~~~~~~~~~g~~~~Ptvl~~~~~  353 (455)
T cd07120         274 ADEVRDRLAARLAAVKVGPGLDPASDMGPLIDRANVDRVDRMVERAIAAGAEVVLRGGPVTEGLAKGAFLRPTLLEVDDP  353 (455)
T ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCcCCccCHHHHHHHHHHHHHHHHCCCEEEeCCccCcccCCCCceECCEEEecCCC
Confidence            6889999999999999999999999999999999999999999999999999999775322   2589999999999999


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      ++.++++|
T Consensus       354 d~~i~~~E  361 (455)
T cd07120         354 DADIVQEE  361 (455)
T ss_pred             CChhhhCc
Confidence            99999988

Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.

>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like

Probab=99.72  E-value=5.8e-17  Score=113.25  Aligned_cols=85  Identities=34%  Similarity=0.596  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+|.+.++++|||+++.+++++.+++++++++|+++++||....  ..++|++|||+.+++++
T Consensus       292 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~~~~~~~Ptvl~~v~~~  371 (471)
T cd07139         292 YDEVVEALAAAVAALKVGDPLDPATQIGPLASARQRERVEGYIAKGRAEGARLVTGGGRPAGLDRGWFVEPTLFADVDND  371 (471)
T ss_pred             HHHHHHHHHHHHHhCCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCeEEccEEEecCCCc
Confidence            5889999999999999999999999999999999999999999999999999999986532  25889999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      ++++++|
T Consensus       372 ~~~~~eE  378 (471)
T cd07139         372 MRIAQEE  378 (471)
T ss_pred             chHHhCc
Confidence            9999998

The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.

>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like

Probab=99.72  E-value=6.8e-17  Score=112.31  Aligned_cols=84  Identities=25%  Similarity=0.348  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+.++++||++++.+++++.++++++. +|+++++||......|+|++|||+.+++.++.
T Consensus       273 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~i~~~i~~a~-~ga~~~~gg~~~~~~g~~~~Ptvl~~~~~~~~  351 (450)
T cd07092         273 YDEFVAALVEAVSAIRVGDPDDEDTEMGPLNSAAQRERVAGFVERAP-AHARVLTGGRRAEGPGYFYEPTVVAGVAQDDE  351 (450)
T ss_pred             HHHHHHHHHHHHhhCCcCCCCCCCCccCcccCHHHHHHHHHHHHHHH-cCCEEEeCCCCCCCCccEEeeEEEEcCCCCCh
Confidence            58899999999999999999999999999999999999999999998 99999999875434689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       352 ~~~~E  356 (450)
T cd07092         352 IVQEE  356 (450)
T ss_pred             HHhCC
Confidence            99998

NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.

>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like

Probab=99.72  E-value=5.3e-17  Score=113.10  Aligned_cols=83  Identities=24%  Similarity=0.384  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++.+||++++.+++++.+++++++++|+++++||..+  .|+|++|||+.+++++++
T Consensus       279 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~vl~gg~~~--~g~~~~Ptvl~~~~~~~~  356 (456)
T cd07145         279 YDKFLKLLVEKVKKLKVGDPLDESTDLGPLISPEAVERMENLVNDAVEKGGKILYGGKRD--EGSFFPPTVLENDTPDMI  356 (456)
T ss_pred             HHHHHHHHHHHHhcCCcCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCCC--CCeEECCEeecCCCCCCh
Confidence            578899999999999999999999999999999999999999999999999999998654  389999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       357 i~~~E  361 (456)
T cd07145         357 VMKEE  361 (456)
T ss_pred             HhhCC
Confidence            99988

NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.

>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like

Probab=99.71  E-value=7.1e-17  Score=112.74  Aligned_cols=85  Identities=40%  Similarity=0.562  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+|.+++++|||++|+.+++++.++|++++++|+++++||....  ..|+|+.|||+.+++++
T Consensus       282 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~v~~a~~~Ga~v~~gg~~~~~~~~g~~~~Ptvl~~~~~~  361 (462)
T cd07112         282 KDEFLEKVVAAAREWKPGDPLDPATRMGALVSEAHFDKVLGYIESGKAEGARLVAGGKRVLTETGGFFVEPTVFDGVTPD  361 (462)
T ss_pred             HHHHHHHHHHHHhcCCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCccCCCCCCCeEEeeEEecCCCCC
Confidence            5789999999999999999999999999999999999999999999999999999986531  25889999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      ++++++|
T Consensus       362 ~~~~~eE  368 (462)
T cd07112         362 MRIAREE  368 (462)
T ss_pred             ChHHhCC
Confidence            9999998

NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.

>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like

Probab=99.71  E-value=8.1e-17  Score=113.04  Aligned_cols=85  Identities=28%  Similarity=0.375  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++.+||++++.+++++.+++++++++|++++.||......|+|+.|||+.++++++.
T Consensus       302 ~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~~~~~~~  381 (480)
T cd07111         302 AEELIRKLKERMSHLRVGDPLDKAIDMGAIVDPAQLKRIRELVEEGRAEGADVFQPGADLPSKGPFYPPTLFTNVPPASR  381 (480)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCeEEeeEEEecCCCCCh
Confidence            68899999999999999999999999999999999999999999999999999998864324689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       382 i~~eE  386 (480)
T cd07111         382 IAQEE  386 (480)
T ss_pred             hhcCC
Confidence            99988

Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.

>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like

Probab=99.71  E-value=8.2e-17  Score=112.18  Aligned_cols=85  Identities=31%  Similarity=0.479  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHH-CCCeEEeCCcccC----CCCceEeeEEEeeC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKS-QGAQLVAGGGRAG----DKGFYVQPTVFANV   77 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~-~Ga~i~~gg~~~~----~~g~~i~Ptii~~v   77 (87)
                      |++|.++|++.++++++|+|.+.++++||||++.+++++.++++++++ +|+++++||..+.    ..|+|++|||+.++
T Consensus       273 ~~~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~~ga~vl~gG~~~~~~~~~~g~~~~Ptvl~~~  352 (457)
T cd07108         273 YDAFLEKLVAKLSKLKIGDPLDEATDIGAIISEKQFAKVCGYIDLGLSTSGATVLRGGPLPGEGPLADGFFVQPTIFSGV  352 (457)
T ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCcCccCCCCCceEECCEEEecC
Confidence            578999999999999999999999999999999999999999999998 9999999986531    35899999999999


Q ss_pred             CCCCcchhcC
Q psy5845          78 RDDMKIAREE   87 (87)
Q Consensus        78 ~~~~~i~~eE   87 (87)
                      ++++.+++||
T Consensus       353 ~~~~~~~~eE  362 (457)
T cd07108         353 DNEWRLAREE  362 (457)
T ss_pred             CCCChhhhcC
Confidence            9999999998

NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.

>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like

Probab=99.71  E-value=8.4e-17  Score=111.63  Aligned_cols=85  Identities=13%  Similarity=0.040  Sum_probs=77.4

Q ss_pred             ChhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           2 HWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      -+++|.++|++.++++++|+|.+.++.+||++++.+++++.+++++++++|+++++||...+..|+|++|||+ ++++++
T Consensus       253 i~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~i~~~v~~a~~~ga~~l~gg~~~~~~g~~~~Ptv~-~v~~~~  331 (431)
T cd07095         253 VGDAFLERLVEAAKRLRIGAPDAEPPFMGPLIIAAAAARYLLAQQDLLALGGEPLLAMERLVAGTAFLSPGII-DVTDAA  331 (431)
T ss_pred             hHHHHHHHHHHHHHhCCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCEEEeCCCcCCCCCeEEcCEEE-ecCCCC
Confidence            3688999999999999999999888999999999999999999999999999999998654346899999999 699999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .++++|
T Consensus       332 ~i~~eE  337 (431)
T cd07095         332 DVPDEE  337 (431)
T ss_pred             hHHhCC
Confidence            999998

N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.

>TIGR01804 BADH glycine betaine aldehyde dehydrogenase

Probab=99.71  E-value=1.1e-16  Score=111.87  Aligned_cols=85  Identities=36%  Similarity=0.579  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.++++.+||++++.+++++.+++++++++|+++++||....    ..|+|++|||+.+++
T Consensus       289 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~~~~~~~~g~~~~Ptvl~~~~  368 (467)
T TIGR01804       289 KEKFEARLVERTKRIKLGDGFDEATEMGPLISAEHRDKVESYIEKGKEEGATLACGGKRPEREGLQNGFFIEPTVFTDCT  368 (467)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCccCccCCHHHHHHHHHHHHHHHHCCCEEEeCCCccccccCCCCeEEeeEEEeCCC
Confidence            5789999999999999999999999999999999999999999999999999999986432    248999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      +++++++||
T Consensus       369 ~~~~~~~eE  377 (467)
T TIGR01804       369 DDMTIVREE  377 (467)
T ss_pred             CCChHHhCC
Confidence            999999988

Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).

>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1

Probab=99.71  E-value=9.6e-17  Score=111.83  Aligned_cols=85  Identities=35%  Similarity=0.560  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-----CCCceEeeEEEeeC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-----DKGFYVQPTVFANV   77 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-----~~g~~i~Ptii~~v   77 (87)
                      |++|.++|++.++++++|+|.++++++||+||+.+++++.+++++++++|+++++||....     ..|+|++|||+.++
T Consensus       271 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~~~~~~~~~~g~~~~Ptvl~~~  350 (457)
T cd07090         271 KDEFTERLVERTKKIRIGDPLDEDTQMGALISEEHLEKVLGYIESAKQEGAKVLCGGERVVPEDGLENGFYVSPCVLTDC  350 (457)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCcccccCHHHHHHHHHHHHHHHHCCCEEEECCCcCcccccCCCCeeECCEEEecC
Confidence            5889999999999999999998899999999999999999999999999999999986531     25889999999999


Q ss_pred             CCCCcchhcC
Q psy5845          78 RDDMKIAREE   87 (87)
Q Consensus        78 ~~~~~i~~eE   87 (87)
                      ++++.++++|
T Consensus       351 ~~~~~~~~~E  360 (457)
T cd07090         351 TDDMTIVREE  360 (457)
T ss_pred             CCCChHHhCC
Confidence            9999999987

NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.

>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like

Probab=99.70  E-value=1.1e-16  Score=112.20  Aligned_cols=85  Identities=35%  Similarity=0.620  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHhhcc-ccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKT-NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~-~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.+++ +++|+|.+++++|||+|++++++++.+++++++++|+++++||....   ..|+|++|||+.+++
T Consensus       300 ~d~f~~~l~~~~~~~~~~G~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~~~g~~~~Ptvl~~v~  379 (484)
T cd07144         300 YDKFVEKFVEHVKQNYKVGSPFDDDTVVGPQVSKTQYDRVLSYIEKGKKEGAKLVYGGEKAPEGLGKGYFIPPTIFTDVP  379 (484)
T ss_pred             HHHHHHHHHHHHHhhCCcCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCcccCCCCceECCEEEeCCC
Confidence            57888899999885 88999999999999999999999999999999999999999987542   258999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      +++.+++||
T Consensus       380 ~~~~~~~eE  388 (484)
T cd07144         380 QDMRIVKEE  388 (484)
T ss_pred             CCCchhhCC
Confidence            999999998

NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.

>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1

Probab=99.70  E-value=7.6e-17  Score=112.48  Aligned_cols=85  Identities=29%  Similarity=0.448  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCC---cccCCCCceEeeEEEeeCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG---GRAGDKGFYVQPTVFANVRD   79 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg---~~~~~~g~~i~Ptii~~v~~   79 (87)
                      |++|.++|++.++++++|+|.++++++||+++..+++++.+++++++.+|+++++||   ......|+|++|||+.++++
T Consensus       282 ~~~f~~~l~~~~~~l~~g~~~~~~~~~gpl~~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~~~g~~~~Ptvl~~~~~  361 (462)
T PF00171_consen  282 YDEFVEALKERVAKLRVGDPLDESTDVGPLISKAQRERVKALIEDAVAEGAKVLCGGEPQEADPENGFFIPPTVLEDVPP  361 (462)
T ss_dssp             HHHHHHHHHHHHHTSEBSSTTSTTCSBCHCSSHHHHHHHHHHHHHHHHTTSEEEEETSSSSBCSSSSTEEEEEEEESEHT
T ss_pred             cchhhhhhhhccccccccCCccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            578999999999999999999989999999999999999999999999999999988   23335789999999999999


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      +|+++++|
T Consensus       362 ~~~~~~~E  369 (462)
T PF00171_consen  362 DMPIMQEE  369 (462)
T ss_dssp             TSHHHHSC
T ss_pred             cccccccc
Confidence            99999988

2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....

>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like

Probab=99.70  E-value=1.2e-16  Score=111.61  Aligned_cols=85  Identities=29%  Similarity=0.438  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|+++++++++|+|.++++++|||+++.+++++.+++++++.+|+++++||....    ..|+|+.|||+.+++
T Consensus       279 ~d~f~~~L~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~~~~~i~~a~~~Ga~~~~gg~~~~~~~~~~g~~~~Ptvl~~~~  358 (465)
T cd07098         279 YDKLLEILTDRVQALRQGPPLDGDVDVGAMISPARFDRLEELVADAVEKGARLLAGGKRYPHPEYPQGHYFPPTLLVDVT  358 (465)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccCCcCcCCCCcEEcCEEEeCCC
Confidence            6889999999999999999999999999999999999999999999999999999885421    258999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      ++++++++|
T Consensus       359 ~~~~~~~~E  367 (465)
T cd07098         359 PDMKIAQEE  367 (465)
T ss_pred             CCCHHHhCC
Confidence            999999987

Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.

>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA

Probab=99.70  E-value=9.8e-17  Score=113.27  Aligned_cols=84  Identities=33%  Similarity=0.471  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+|.++++.+|||+++.+++++.++|+++++ |+++++||....  ..|+|+.|||+.+++++
T Consensus       328 ~~~f~~~l~~~~~~~~~g~p~d~~~~~Gpli~~~~~~~v~~~i~~a~~-g~~vl~gG~~~~~~~~g~~~~Ptvl~~v~~~  406 (512)
T cd07124         328 YDEFLERLVERTKALKVGDPEDPEVYMGPVIDKGARDRIRRYIEIGKS-EGRLLLGGEVLELAAEGYFVQPTIFADVPPD  406 (512)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCcccCCcCHHHHHHHHHHHHHHHh-CCEEEecCccCCCCCCCceEcCEEEecCCCC
Confidence            578899999999999999999999999999999999999999999988 899999987642  26899999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      +.+++||
T Consensus       407 ~~i~~eE  413 (512)
T cd07124         407 HRLAQEE  413 (512)
T ss_pred             ChHHhCC
Confidence            9999998

Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.

>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like

Probab=99.70  E-value=1e-16  Score=112.00  Aligned_cols=85  Identities=35%  Similarity=0.583  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCCceEeeEEEeeCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRD   79 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g~~i~Ptii~~v~~   79 (87)
                      |++|.++|++.++++++|+|.+.++++||++++.+++++.+++++++++|+++++||....   ..|+|++|||+.++++
T Consensus       286 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~v~~a~~~Ga~~l~gg~~~~~~~~~g~~~~Ptvl~~~~~  365 (466)
T cd07138         286 YAEAEEIAAAAAEAYVVGDPRDPATTLGPLASAAQFDRVQGYIQKGIEEGARLVAGGPGRPEGLERGYFVKPTVFADVTP  365 (466)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCcCCccCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCcCCCCceECCEEecCCCC
Confidence            6889999999999999999999999999999999999999999999999999999986321   2589999999999999


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      ++++++||
T Consensus       366 ~~~i~~eE  373 (466)
T cd07138         366 DMTIAREE  373 (466)
T ss_pred             CChHHhCC
Confidence            99999998

The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.

>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like

Probab=99.70  E-value=1.3e-16  Score=111.73  Aligned_cols=85  Identities=39%  Similarity=0.611  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.++++++||++++.+++++.+++++|+++|+++++||....    ..|+|++|||+.+++
T Consensus       291 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~~~~gg~~~~~~~~~~g~~~~Ptvl~~~~  370 (478)
T cd07131         291 YDEFLKRFVERAKRLRVGDGLDEETDMGPLINEAQLEKVLNYNEIGKEEGATLLLGGERLTGGGYEKGYFVEPTVFTDVT  370 (478)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCcCCcCCCHHHHHHHHHHHHHHHHCCCEEEeCCCccccccCCCCceECCEEEeCCC
Confidence            5789999999999999999999999999999999999999999999999999999986432    258899999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      ++++++++|
T Consensus       371 ~~~~~~~~E  379 (478)
T cd07131         371 PDMRIAQEE  379 (478)
T ss_pred             CCChHhhCC
Confidence            999999988

Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.

>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like

Probab=99.70  E-value=1.2e-16  Score=111.08  Aligned_cols=85  Identities=32%  Similarity=0.511  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++.+||+++..+++++.+++++++++|+++++||......|+|++|||+.++++++.
T Consensus       273 ~~~f~~~l~~~~~~~~~g~~~~~~~~~gp~i~~~~~~~~~~~i~~a~~~ga~~l~gg~~~~~~g~~~~Ptil~~~~~~~~  352 (451)
T cd07103         273 YDEFVEKLVERVKKLKVGNGLDEGTDMGPLINERAVEKVEALVEDAVAKGAKVLTGGKRLGLGGYFYEPTVLTDVTDDML  352 (451)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCCCcCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCcEECCEEeeCCCCcCH
Confidence            68899999999999999999999999999999999999999999999999999999875433689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       353 ~~~~E  357 (451)
T cd07103         353 IMNEE  357 (451)
T ss_pred             HHhCC
Confidence            99988

Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.

>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like

Probab=99.70  E-value=1.4e-16  Score=112.23  Aligned_cols=84  Identities=37%  Similarity=0.511  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++||+|++.+++++.++++++++.| ++++||......|+|+.|||+.++++++.
T Consensus       316 ~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~g-~vl~gg~~~~~~g~~~~Ptvl~~~~~~~~  394 (500)
T cd07083         316 YEPVLERLLKRAERLSVGPPEENGTDLGPVIDAEQEAKVLSYIEHGKNEG-QLVLGGKRLEGEGYFVAPTVVEEVPPKAR  394 (500)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCC-EEEeCCCcCCCCCeEEccEEEeCCCCCCh
Confidence            68899999999999999999999999999999999999999999998876 89999876434589999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       395 ~~~eE  399 (500)
T cd07083         395 IAQEE  399 (500)
T ss_pred             HhhCC
Confidence            99998

ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.

>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp

Probab=99.70  E-value=1.4e-16  Score=110.71  Aligned_cols=85  Identities=24%  Similarity=0.311  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc---CCCCceEeeEEEeeCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA---GDKGFYVQPTVFANVRD   79 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~---~~~g~~i~Ptii~~v~~   79 (87)
                      |++|.++|++.++++++|+|.+.++.+||+|+..+++++.+++++++++|+++++||...   +..|+|++|||+.++++
T Consensus       271 ~~~f~~~L~~~~~~l~vg~p~~~~~~~gpli~~~~~~~i~~~i~~a~~~ga~vl~gg~~~~~~~~~g~~~~Ptvl~~~~~  350 (452)
T cd07102         271 YDAFVEAFVAVVKGYKLGDPLDPSTTLGPVVSARAADFVRAQIADAIAKGARALIDGALFPEDKAGGAYLAPTVLTNVDH  350 (452)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCCceEcCEEEecCCC
Confidence            688999999999999999999999999999999999999999999999999999998642   13589999999999999


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      +|+++++|
T Consensus       351 ~~~i~~~E  358 (452)
T cd07102         351 SMRVMREE  358 (452)
T ss_pred             CChhhhcC
Confidence            99999998

PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.

>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like

Probab=99.70  E-value=1.2e-16  Score=111.57  Aligned_cols=82  Identities=32%  Similarity=0.435  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+.++.+||+|++.+++++.+++++++++|+++++||..   .|+|++|||+.++++++.
T Consensus       287 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~v~~a~~~ga~vl~gg~~---~g~~~~Ptvl~~~~~~~~  363 (465)
T cd07151         287 YDEFVEKFVERVKALPYGDPSDPDTVVGPLINESQVDGLLDKIEQAVEEGATLLVGGEA---EGNVLEPTVLSDVTNDME  363 (465)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHhCCCEEEecCCc---CCEEEccEEEeCCCCCCc
Confidence            57889999999999999999988999999999999999999999999999999999863   588999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       364 ~~~eE  368 (465)
T cd07151         364 IAREE  368 (465)
T ss_pred             hhhCc
Confidence            99998

NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.

>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed

Probab=99.70  E-value=1.3e-16  Score=112.02  Aligned_cols=83  Identities=11%  Similarity=0.040  Sum_probs=75.1

Q ss_pred             hHHHHHHHHhhccccccCCC-CCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           4 TSAAVFTKDLDKTNYVTQGL-RAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         4 ~~~~~~l~~~~~~~~~g~~~-~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      ++|.++|++.++++++|+|. ++++++||||+..+++++.+++++++++|+++++||...+.+|+|++|||+ ++++++.
T Consensus       292 d~f~~~l~~~~~~~~vG~p~~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~PTvl-~v~~~~~  370 (487)
T PRK09457        292 DAFLARLVAVAKRLTVGRWDAEPQPFMGAVISEQAAQGLVAAQAQLLALGGKSLLEMTQLQAGTGLLTPGII-DVTGVAE  370 (487)
T ss_pred             HHHHHHHHHHHhcCcCCCCCcCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCccCCCCeeEecEEe-ccCCCCh
Confidence            88999999999999999986 678899999999999999999999999999999987643345799999999 7999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       371 i~~eE  375 (487)
T PRK09457        371 LPDEE  375 (487)
T ss_pred             HHhCC
Confidence            99998

>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins

Probab=99.70  E-value=1.6e-16  Score=110.56  Aligned_cols=82  Identities=28%  Similarity=0.384  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|++.++++++|+|.+.++.+||+++..+++++.+++++++++|+++++||..   .++|++|||+.++++++.
T Consensus       277 ~d~f~~~L~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v~~gg~~---~g~~~~Ptvl~~~~~~~~  353 (453)
T cd07094         277 YDEFIEAFVAAVKKLKVGDPLDEDTDVGPLISEEAAERVERWVEEAVEAGARLLCGGER---DGALFKPTVLEDVPRDTK  353 (453)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCccC---CCeEEeCEEEeCCCCCCh
Confidence            57899999999999999999999999999999999999999999999999999998864   478999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       354 i~~~E  358 (453)
T cd07094         354 LSTEE  358 (453)
T ss_pred             hhhCC
Confidence            99998

ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.

>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like

Probab=99.69  E-value=1.7e-16  Score=110.38  Aligned_cols=82  Identities=29%  Similarity=0.402  Sum_probs=76.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+.++++||+++..+++++.+++++++++|+++++||..   .|+|++|||+.++++++.
T Consensus       275 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~vl~gg~~---~g~~~~Ptvl~~~~~~~~  351 (451)
T cd07150         275 YDEFVKKFVARASKLKVGDPRDPDTVIGPLISPRQVERIKRQVEDAVAKGAKLLTGGKY---DGNFYQPTVLTDVTPDMR  351 (451)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCcc---CCcEEcCEEEeCCCCCCH
Confidence            68899999999999999999998999999999999999999999999999999999864   488999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       352 ~~~~E  356 (451)
T cd07150         352 IFREE  356 (451)
T ss_pred             HHhCC
Confidence            99998

Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.

>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative

Probab=99.69  E-value=1.7e-16  Score=112.07  Aligned_cols=84  Identities=30%  Similarity=0.505  Sum_probs=76.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++||+|++.+++++.+++++++++| ++++||......|+|++|||+.+++++|.
T Consensus       329 ~d~f~~~L~~~~~~l~~g~~~~~~~~~gpli~~~~~~~v~~~i~~a~~~g-~~l~gg~~~~~~g~~~~Ptvl~~~~~~~~  407 (511)
T TIGR01237       329 YDAVVERFVEATRSLNVGPTDDPSTQVGPVIDQKSQAKIQEYIEQGKAEG-ELAIGGCDAPSEGYFIGPTIFKDVDRHAR  407 (511)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCC-cEEECCccCCCCCeEEcCEEEeCCCCCCh
Confidence            67899999999999999999999999999999999999999999999888 78888865433589999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       408 i~~eE  412 (511)
T TIGR01237       408 LAQEE  412 (511)
T ss_pred             HhhCC
Confidence            99998

This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.

>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase

Probab=99.69  E-value=1.9e-16  Score=110.99  Aligned_cols=84  Identities=23%  Similarity=0.353  Sum_probs=77.1

Q ss_pred             hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc--C--CCCceEeeEEEeeCCC
Q psy5845           4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA--G--DKGFYVQPTVFANVRD   79 (87)
Q Consensus         4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~--~--~~g~~i~Ptii~~v~~   79 (87)
                      ++|.++|++.++++++|+|.+++++|||||+.++++++.+++++++++|+++++||...  .  ..|+|+.|||+.++++
T Consensus       291 ~~f~~~l~~~~~~~~~G~~~~~~~~~Gp~i~~~~~~~~~~~i~~a~~~Ga~il~gg~~~~~~~~~~g~~~~Ptvl~~~~~  370 (477)
T TIGR01722       291 DEWVPEIRERAEKIRIGPGDDPGAEMGPLITPQAKDRVASLIAGGAAEGAEVLLDGRGYKVDGYEEGNWVGPTLLERVPP  370 (477)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCCCeEECCEEeeCCCC
Confidence            67889999999999999999999999999999999999999999999999999998642  1  2589999999999999


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      ++.++++|
T Consensus       371 ~~~~~~eE  378 (477)
T TIGR01722       371 TMKAYQEE  378 (477)
T ss_pred             CChhhhCC
Confidence            99999988

In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.

>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like

Probab=99.69  E-value=1.8e-16  Score=111.12  Aligned_cols=84  Identities=31%  Similarity=0.431  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.+.++.+||++++.|++++.+++++++++|+++++||....    ..|+|+.|||+.+++
T Consensus       296 ~d~f~~~l~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~~g~~~~Ptvl~~~~  375 (479)
T cd07116         296 YDRFMERALERVKAIKQGNPLDTETMIGAQASLEQLEKILSYIDIGKEEGAEVLTGGERNELGGLLGGGYYVPTTFKGGN  375 (479)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCCCCeeecCeEEccCC
Confidence            5788999999999999999999999999999999999999999999999999999986531    258899999999875


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                       ++.+++||
T Consensus       376 -~~~~~~eE  383 (479)
T cd07116         376 -KMRIFQEE  383 (479)
T ss_pred             -CChhhhcC
Confidence             89999998

Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.

>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional

Probab=99.69  E-value=1.4e-16  Score=115.46  Aligned_cols=84  Identities=18%  Similarity=0.149  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc-------CCCCceEeeEEEe
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA-------GDKGFYVQPTVFA   75 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~-------~~~g~~i~Ptii~   75 (87)
                      |++|.++|++.++++++|+|.+.++++|||||+.|++++.++|++|+++ +++++||...       ...|+|++|||+.
T Consensus       309 ~d~f~~~l~~~~~~l~vG~p~d~~t~~GPli~~~~~~~i~~~i~~a~~~-a~vl~Gg~~~~~~~~~~~~~g~f~~PTvl~  387 (675)
T PRK11563        309 VDAVIEALRARLAKVVVGDPRLEGVRMGALASLEQREDVREKVAALLAA-AEIVFGGPDSFEVVGADAEKGAFFPPTLLY  387 (675)
T ss_pred             HHHHHHHHHHHHhcCccCCCCCCCCcccCCcCHHHHHHHHHHHHHHHhC-CEEEECCcccccccCCCCCCCeeECCEEEe
Confidence            6889999999999999999999999999999999999999999999998 9999998521       1258999999999


Q ss_pred             eCCC--CCcchhcC
Q psy5845          76 NVRD--DMKIAREE   87 (87)
Q Consensus        76 ~v~~--~~~i~~eE   87 (87)
                      ++++  ++.++++|
T Consensus       388 ~v~~~~~~~i~~eE  401 (675)
T PRK11563        388 CDDPLEAPAVHDVE  401 (675)
T ss_pred             ccCchhhhhHhhcc
Confidence            9998  57899987

>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like

Probab=99.69  E-value=2e-16  Score=109.93  Aligned_cols=82  Identities=24%  Similarity=0.343  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+.++.+||++++.+++++.+++++++++|+++++||..   .|+|++|||+.+++++++
T Consensus       266 ~~~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~vl~gg~~---~g~~~~Ptvl~~~~~~~~  342 (443)
T cd07152         266 ADAYTAKLAAKAKHLPVGDPATGQVALGPLINARQLDRVHAIVDDSVAAGARLEAGGTY---DGLFYRPTVLSGVKPGMP  342 (443)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHhCCCEEEeccCc---CCEEEcCEEEecCCCCCh
Confidence            57889999999999999999988999999999999999999999999999999999864   478999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       343 ~~~eE  347 (443)
T cd07152         343 AFDEE  347 (443)
T ss_pred             hhhcc
Confidence            99998

NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.

>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like

Probab=99.69  E-value=2.1e-16  Score=110.16  Aligned_cols=82  Identities=26%  Similarity=0.305  Sum_probs=76.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++.+|||+++.+++++.+++++++++|+++++||..   .|+|++|||+.++++++.
T Consensus       274 ~d~f~~~l~~~~~~l~~g~p~~~~~~~gpli~~~~~~~v~~~v~~a~~~Ga~vl~gg~~---~g~~~~Ptvl~~~~~~~~  350 (451)
T cd07146         274 ADEFVDLLVEKSAALVVGDPMDPATDMGTVIDEEAAIQIENRVEEAIAQGARVLLGNQR---QGALYAPTVLDHVPPDAE  350 (451)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCCc---CCEEEcCEEeecCCCCCH
Confidence            57899999999999999999988999999999999999999999999999999999864   478999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       351 ~~~eE  355 (451)
T cd07146         351 LVTEE  355 (451)
T ss_pred             HHhCC
Confidence            99998

Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.

>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase

Probab=99.68  E-value=2.4e-16  Score=111.42  Aligned_cols=84  Identities=18%  Similarity=0.184  Sum_probs=75.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc-------CCCCceEeeEEEe
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA-------GDKGFYVQPTVFA   75 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~-------~~~g~~i~Ptii~   75 (87)
                      |++|.++|++.++++++|+|.++++++|||||+.+++++.++|+++++. +++++||...       ...|+|++|||+.
T Consensus       305 ~d~f~~~l~~~~~~l~~G~p~~~~~~lGpli~~~~~~~i~~~i~~a~~~-A~vl~GG~~~~~~~~~~~~~g~~~~PTvl~  383 (513)
T cd07128         305 VDAVIEALKARLAKVVVGDPRLEGVRMGPLVSREQREDVRAAVATLLAE-AEVVFGGPDRFEVVGADAEKGAFFPPTLLL  383 (513)
T ss_pred             HHHHHHHHHHHHHhcccCCCccCCCCcCCCCCHHHHHHHHHHHHHHHhC-CEEEECCCccccccCCCCCCCEEECCEEEe
Confidence            6889999999999999999999999999999999999999999999987 9999998642       1258999999999


Q ss_pred             eCCC--CCcchhcC
Q psy5845          76 NVRD--DMKIAREE   87 (87)
Q Consensus        76 ~v~~--~~~i~~eE   87 (87)
                      ++++  ++.++++|
T Consensus       384 ~v~~~~~~~i~~eE  397 (513)
T cd07128         384 CDDPDAATAVHDVE  397 (513)
T ss_pred             ccCCcccchHHhCC
Confidence            8886  48899987

The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.

>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like

Probab=99.68  E-value=2.9e-16  Score=109.25  Aligned_cols=82  Identities=22%  Similarity=0.335  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+.++.+|||+++.+++++.+++++++++|+++++||..   .|+|++|||+.+++++++
T Consensus       276 ~d~f~~~L~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~~l~gg~~---~g~~~~Ptvl~~~~~~~~  352 (452)
T cd07147         276 YDEFKSRLVARVKALKTGDPKDDATDVGPMISESEAERVEGWVNEAVDAGAKLLTGGKR---DGALLEPTILEDVPPDME  352 (452)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEecCCc---CCEEEcCEEEeCCCCCCh
Confidence            57899999999999999999998999999999999999999999999999999999864   478999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       353 ~~~~E  357 (452)
T cd07147         353 VNCEE  357 (452)
T ss_pred             HHhCc
Confidence            99988

Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.

>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional

Probab=99.67  E-value=4.4e-16  Score=109.62  Aligned_cols=83  Identities=28%  Similarity=0.385  Sum_probs=76.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++.+||||++.+++++.+++++++++| ++++||... ..+.|++|||+.+++++++
T Consensus       315 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~v~~a~~~G-~i~~gg~~~-~~~~~~~Ptvl~~v~~~~~  392 (494)
T PRK09847        315 ADEFLALLKQQAQNWQPGHPLDPATTMGTLIDCAHADSVHSFIREGESKG-QLLLDGRNA-GLAAAIGPTIFVDVDPNAS  392 (494)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHCC-eEEECCccC-CCCceEeeEEEeCCCCCCh
Confidence            57889999999999999999999999999999999999999999999999 999988654 3578999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       393 ~~~eE  397 (494)
T PRK09847        393 LSREE  397 (494)
T ss_pred             HHhCc
Confidence            99998

>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like

Probab=99.67  E-value=4.3e-16  Score=108.54  Aligned_cols=84  Identities=29%  Similarity=0.485  Sum_probs=75.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCCceEeeEEEeeCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRD   79 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g~~i~Ptii~~v~~   79 (87)
                      |++|.++|++.++++++|+|.+ ++++||++++.+++++.+++++++++|+++++||....   ..|+|++|||+.++++
T Consensus       273 ~~~f~~~l~~~~~~~~~G~p~~-~~~~gpli~~~~~~~~~~~i~~a~~~ga~~l~gg~~~~~~~~~g~~~~Ptvl~~~~~  351 (454)
T cd07109         273 YDEVLERLVERFRALRVGPGLE-DPDLGPLISAKQLDRVEGFVARARARGARIVAGGRIAEGAPAGGYFVAPTLLDDVPP  351 (454)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcc-cCcCCCccCHHHHHHHHHHHHHHHhCCCEEEeCCCcCcccCCCCcEECcEEEecCCC
Confidence            5889999999999999999875 68999999999999999999999999999999886432   2589999999999999


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      ++.++++|
T Consensus       352 ~~~~~~eE  359 (454)
T cd07109         352 DSRLAQEE  359 (454)
T ss_pred             CChhhhCC
Confidence            99999998

Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.

>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins

Probab=99.67  E-value=4.2e-16  Score=108.23  Aligned_cols=82  Identities=17%  Similarity=0.296  Sum_probs=73.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|. .++++|||+|+.+++++.+++++++. |+++++||..+ ..|+|+.|||+.+++++++
T Consensus       255 ~d~f~~~l~~~~~~~~~g~p~-~~~~~gpli~~~~~~~v~~~i~~a~~-ga~~l~gg~~~-~~g~~~~Ptvl~~~~~~~~  331 (432)
T cd07137         255 APTLIDALKNTLEKFFGENPK-ESKDLSRIVNSHHFQRLSRLLDDPSV-ADKIVHGGERD-EKNLYIEPTILLDPPLDSS  331 (432)
T ss_pred             HHHHHHHHHHHHHHHhCCCCC-ccCCcCCcCCHHHHHHHHHHHHHHHh-CCeEEeCCCcC-CCCCEEeeEEEecCCCcch
Confidence            478889999999999999984 58899999999999999999999998 89999998653 3689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       332 ~~~eE  336 (432)
T cd07137         332 IMTEE  336 (432)
T ss_pred             hhhcc
Confidence            99998

Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.

>PLN02203 aldehyde dehydrogenase

Probab=99.67  E-value=4.5e-16  Score=109.43  Aligned_cols=82  Identities=20%  Similarity=0.308  Sum_probs=73.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+. +.|||+||++|++++.++++++++. +++++||..+ ..|+|++|||+.+++++|.
T Consensus       265 ~d~f~~~L~~~~~~~~~G~p~~~-~~~Gpli~~~~~~~v~~~i~~a~~~-~~~~~gg~~~-~~g~~i~PTvl~~v~~d~~  341 (484)
T PLN02203        265 APILIELLKSTIKKFFGENPRES-KSMARILNKKHFQRLSNLLKDPRVA-ASIVHGGSID-EKKLFIEPTILLNPPLDSD  341 (484)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcC-CCcCCCCCHHHHHHHHHHHHHHHhC-CeEEeCCCcC-CCCCEEeeEEEecCCCCCH
Confidence            57888999999999999999875 6899999999999999999999876 7888888653 4689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       342 i~~eE  346 (484)
T PLN02203        342 IMTEE  346 (484)
T ss_pred             HHhcC
Confidence            99998

>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional

Probab=99.67  E-value=5e-16  Score=109.75  Aligned_cols=83  Identities=33%  Similarity=0.549  Sum_probs=75.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+++ ++||+|++.+++++.++++++.+. +++++||..+...|+|++|||+.+++++++
T Consensus       333 ~d~f~~~l~~~~~~l~~g~p~~~~-~~Gpli~~~~~~~v~~~v~~a~~~-~~vl~Gg~~~~~~g~~~~Ptvl~~v~~~~~  410 (514)
T PRK03137        333 YDEVLEKVVELTKELTVGNPEDNA-YMGPVINQASFDKIMSYIEIGKEE-GRLVLGGEGDDSKGYFIQPTIFADVDPKAR  410 (514)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcc-CcCCCCCHHHHHHHHHHHHHHHhC-CEEEeCCCcCCCCceEEeeEEEeCCCCCCH
Confidence            588999999999999999999887 999999999999999999999887 699999875434689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       411 ~~~eE  415 (514)
T PRK03137        411 IMQEE  415 (514)
T ss_pred             HHhCC
Confidence            99988

>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like

Probab=99.67  E-value=5.9e-16  Score=107.49  Aligned_cols=84  Identities=25%  Similarity=0.357  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHhhccccccCC-CCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQG-LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~-~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++.++.|+| .+.++++||++++.+++++.+++++++++|+++++||..+ ..++|+.|||+.++++++
T Consensus       253 ~d~f~~~L~~~~~~~~~~~~~~~~~~~~gpli~~~~~~~i~~~i~~a~~~ga~~~~gg~~~-~~g~~~~Ptvl~~~~~~~  331 (433)
T cd07134         253 KDAFVEHLKAEIEKFYGKDAARKASPDLARIVNDRHFDRLKGLLDDAVAKGAKVEFGGQFD-AAQRYIAPTVLTNVTPDM  331 (433)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcCCCCccCCcCCHHHHHHHHHHHHHHHhCCCEEEeCCCcC-CCCCEEeeEEEeCCCCcc
Confidence            57889999999999877776 6778899999999999999999999999999999998764 458999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .++++|
T Consensus       332 ~~~~eE  337 (433)
T cd07134         332 KIMQEE  337 (433)
T ss_pred             HHHhcc
Confidence            999988

Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.

>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins

Probab=99.66  E-value=5.9e-16  Score=107.04  Aligned_cols=82  Identities=30%  Similarity=0.454  Sum_probs=76.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+.++.+||++++.+++++.+++++++++|+++++||..   .|+|++|||+.+++++++
T Consensus       255 ~~~f~~~l~~~~~~~~~g~~~~~~~~~gp~i~~~~~~~i~~~i~~a~~~G~~~~~gg~~---~g~~~~Ptvl~~~~~~~~  331 (431)
T cd07104         255 YDEFVEKLVAKAKALPVGDPRDPDTVIGPLINERQVDRVHAIVEDAVAAGARLLTGGTY---EGLFYQPTVLSDVTPDMP  331 (431)
T ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCccCcccCHHHHHHHHHHHHHHHHCCCEEEeCCCC---CCceECCEEeecCCCCCh
Confidence            57889999999999999999988899999999999999999999999999999998864   478999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       332 ~~~eE  336 (431)
T cd07104         332 IFREE  336 (431)
T ss_pred             hhhCc
Confidence            99988

ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.

>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like

Probab=99.66  E-value=9.3e-16  Score=106.76  Aligned_cols=85  Identities=31%  Similarity=0.556  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      +++|.++|++.++++++|+|.++++++||+++..+++++.+++++++++|+++++||....    ..++|++|||+.+++
T Consensus       273 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~gg~~~~~~~~~~~~~~~Ptvl~~~~  352 (455)
T cd07093         273 YDEFLERFVERAKALKVGDPLDPDTEVGPLISKEHLEKVLGYVELARAEGATILTGGGRPELPDLEGGYFVEPTVITGLD  352 (455)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCcCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCCccccccCCCCceECCEEEecCC
Confidence            4789999999999999999999999999999999999999999999999999999986542    248899999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      ++++++++|
T Consensus       353 ~~~~~~~~E  361 (455)
T cd07093         353 NDSRVAQEE  361 (455)
T ss_pred             CCChHHhCC
Confidence            999999987

In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.

>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11

Probab=99.66  E-value=1e-15  Score=107.08  Aligned_cols=83  Identities=27%  Similarity=0.335  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|.+.++++++|+|.++++.+||+|+..+++++.++++++..+|+++++||...  .|+|+.|||+.+++++++
T Consensus       295 ~d~f~~~l~~~~~~~~~g~~~~~~~~~gp~i~~~~~~~~~~~~~~a~~~ga~~~~gg~~~--~g~~~~Ptvl~~~~~~~~  372 (473)
T cd07082         295 ADELVELLKEEVAKLKVGMPWDNGVDITPLIDPKSADFVEGLIDDAVAKGATVLNGGGRE--GGNLIYPTLLDPVTPDMR  372 (473)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccC--CCeEEeeEEEecCCCCCH
Confidence            578899999999999999999888999999999999999999999999999999998764  489999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       373 ~~~eE  377 (473)
T cd07082         373 LAWEE  377 (473)
T ss_pred             HHhCc
Confidence            99987

NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.

>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase

Probab=99.65  E-value=9.8e-16  Score=107.58  Aligned_cols=84  Identities=11%  Similarity=0.069  Sum_probs=74.7

Q ss_pred             hhHHHHHHHHhhccccccCC-CCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQG-LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~-~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      +++|.++|++.++++++|+| .+.++++|||++.++++++.+++++++++|+++++||...+..++|++|||+ +++.++
T Consensus       289 ~d~f~~~l~~~~~~~~~g~~~~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~i~PTvl-~v~~~~  367 (484)
T TIGR03240       289 GDAFLARLVEVAERLTVGAWDAEPQPFMGAVISLQAAQRLLAAQAKLLALGGKSLLAMRQLDPGAALLTPGII-DVTGVA  367 (484)
T ss_pred             HHHHHHHHHHHHHhcccCCCCcCCCCcccccCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCEEEcCEEE-ccCCCC
Confidence            48899999999999999996 4677899999999999999999999999999999987643345789999999 689999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .++++|
T Consensus       368 ~i~~eE  373 (484)
T TIGR03240       368 ELPDEE  373 (484)
T ss_pred             HHHhCC
Confidence            999998

Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.

>KOG2454|consensus

Probab=99.65  E-value=1.7e-16  Score=108.21  Aligned_cols=85  Identities=26%  Similarity=0.397  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |+++..+|...++.++.|.+.....+||+|+++.+|+.+.+++++|+++||++++||.+..    +.|.|++||++.|++
T Consensus       347 Yd~~i~~l~~rv~s~r~G~~~~~~vDMGAm~s~nrfdhLesLv~DAv~KGArl~~gGsrF~Hpkyp~g~YF~PTlLvdvt  426 (583)
T KOG2454|consen  347 YDAFIGQLTKRVKSVRAGPPLTGRVDMGAMCSQNRFDHLESLVNDAVDKGARLAVGGSRFGHPKYPVGQYFPPTLLVDVT  426 (583)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCccchhhhhhccchHHHHHHHHHHHhhcchhhhcccccCCCCCCcccccCCeEEEecC
Confidence            6888999999999999998888899999999999999999999999999999999987432    578999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      .+|.|+|||
T Consensus       427 ~eMKIaqeE  435 (583)
T KOG2454|consen  427 HEMKIAQEE  435 (583)
T ss_pred             chhhhHhhh
Confidence            999999998

>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1

Probab=99.65  E-value=1.3e-15  Score=105.94  Aligned_cols=82  Identities=30%  Similarity=0.418  Sum_probs=76.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++.+++|+|.++++.+|||+++.+++++.++++++..+|+++++||..   .++|+.|||+.++++++.
T Consensus       277 ~d~f~~~L~~~~~~~~~g~p~~~~~~~gpl~~~~~~~~~~~~i~~a~~~ga~v~~gg~~---~g~~~~Ptvl~~~~~~~~  353 (453)
T cd07149         277 YDEFLERFVAATKKLVVGDPLDEDTDVGPMISEAEAERIEEWVEEAVEGGARLLTGGKR---DGAILEPTVLTDVPPDMK  353 (453)
T ss_pred             HHHHHHHHHHHHHhCCcCCCCCCCCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCCC---CCeEEcCEEEeCCCCCCH
Confidence            57899999999999999999998999999999999999999999999999999998864   478999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       354 ~~~~E  358 (453)
T cd07149         354 VVCEE  358 (453)
T ss_pred             HHhCC
Confidence            99987

Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.

>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.65  E-value=1.2e-15  Score=107.41  Aligned_cols=81  Identities=20%  Similarity=0.152  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+ ++++||++++.+++++.+++++++++|+++++||.   ..|+|+.|||+.+++++++
T Consensus       311 ~d~f~~~l~~~~~~~~~g~p~~-~~~~gp~i~~~~~~~v~~~i~~a~~~Ga~~l~~~~---~~g~~~~Ptvl~~v~~~~~  386 (496)
T PLN00412        311 ADALVEKVNAKVAKLTVGPPED-DCDITPVVSESSANFIEGLVMDAKEKGATFCQEWK---REGNLIWPLLLDNVRPDMR  386 (496)
T ss_pred             HHHHHHHHHHHHHhCccCCCcc-cCCcCCCcCHHHHHHHHHHHHHHHHCCCEEEecCC---CCCeEEecEEEeCCCCCCH
Confidence            5788899999999999999876 78999999999999999999999999999998764   2589999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       387 i~~eE  391 (496)
T PLN00412        387 IAWEE  391 (496)
T ss_pred             HHhCc
Confidence            99998

>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like

Probab=99.64  E-value=2.3e-15  Score=104.57  Aligned_cols=83  Identities=19%  Similarity=0.284  Sum_probs=73.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+  ..++++||++++.+++++.+++++++++|+++++||....  ..|+|++|||+.+++++
T Consensus       254 ~~~f~~~l~~~~~~~~~g~--~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~~~g~~~~Ptvl~~~~~~  331 (434)
T cd07133         254 LEEFVAAAKAAVAKMYPTL--ADNPDYTSIINERHYARLQGLLEDARAKGARVIELNPAGEDFAATRKLPPTLVLNVTDD  331 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCC--CCCCCcCCCCCHHHHHHHHHHHHHHHhCCCEEEecCCCCcCCCCCcEEeeEEEeCCCCC
Confidence            5789999999999998885  3577899999999999999999999999999999886532  35899999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      +.++++|
T Consensus       332 ~~i~~eE  338 (434)
T cd07133         332 MRVMQEE  338 (434)
T ss_pred             Ccccccc
Confidence            9999998

Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.

>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins

Probab=99.63  E-value=1.6e-15  Score=105.51  Aligned_cols=80  Identities=16%  Similarity=0.302  Sum_probs=72.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+| ++++.+||+|++.+++++.++++++   |+++++||... ..|+|++|||+.++++++.
T Consensus       261 ~d~f~~~l~~~~~~~~~g~p-~~~~~~gpli~~~~~~~i~~~v~~a---g~~v~~gg~~~-~~g~~~~Ptvl~~~~~~~~  335 (436)
T cd07135         261 YDEFVEELKKVLDEFYPGGA-NASPDYTRIVNPRHFNRLKSLLDTT---KGKVVIGGEMD-EATRFIPPTIVSDVSWDDS  335 (436)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-CCCCCcCCCCCHHHHHHHHHHHHhc---CCeEEECCCcC-CCCCEEccEEEecCCCccH
Confidence            57899999999999999999 8889999999999999999999876   78999998764 3689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       336 ~~~~E  340 (436)
T cd07135         336 LMSEE  340 (436)
T ss_pred             HHhcc
Confidence            99988

Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.

>PRK11903 aldehyde dehydrogenase; Provisional

Probab=99.63  E-value=2.6e-15  Score=106.38  Aligned_cols=84  Identities=14%  Similarity=0.125  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc------CCCCceEeeEEEee
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA------GDKGFYVQPTVFAN   76 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~------~~~g~~i~Ptii~~   76 (87)
                      |++|.++|++.++++++|+|.++++++|||||+.+++++.++|+.+ .+|+++++||...      ...|+|++|||+.+
T Consensus       309 ~d~f~~~L~~~~~~l~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~~-~~ga~vl~gg~~~~~~~~~~~~g~~~~PTvl~~  387 (521)
T PRK11903        309 YDAVAEALAARLAKTTVGNPRNDGVRMGPLVSRAQLAAVRAGLAAL-RAQAEVLFDGGGFALVDADPAVAACVGPTLLGA  387 (521)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCcCccCCCCCHHHHHHHHHHHHHH-hcCCEEEECCccCCCCCCCCCCCeEEcCEEEec
Confidence            6889999999999999999999999999999999999999999864 5799999998642      12489999999986


Q ss_pred             CCC--CCcchhcC
Q psy5845          77 VRD--DMKIAREE   87 (87)
Q Consensus        77 v~~--~~~i~~eE   87 (87)
                      ++.  ++.++++|
T Consensus       388 ~~~~~~~~i~~eE  400 (521)
T PRK11903        388 SDPDAATAVHDVE  400 (521)
T ss_pred             cCCCccchHHhCc
Confidence            554  46888887

>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA

Probab=99.60  E-value=6.2e-15  Score=104.33  Aligned_cols=82  Identities=20%  Similarity=0.108  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+.++.|||++++.+++++.++++++.. ++++++||..+...|+|+.|||+.++  ++.
T Consensus       326 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~-~~~vl~gg~~~~~~g~~~~Ptvl~~v--~~~  402 (518)
T cd07125         326 AERFIEMLKGAMASLKVGDPWDLSTDVGPLIDKPAGKLLRAHTELMRG-EAWLIAPAPLDDGNGYFVAPGIIEIV--GIF  402 (518)
T ss_pred             HHHHHHHHHHHHhcCCccCCCCCCCCcCCCcCHHHHHHHHHHHHHHHh-CCEEEeCCCcCCCCCeEEccEEEeec--CCh
Confidence            578999999999999999999999999999999999999999999987 57888888654226899999999988  899


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       403 i~~eE  407 (518)
T cd07125         403 DLTTE  407 (518)
T ss_pred             HhhCc
Confidence            99988

The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.

>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family

Probab=99.60  E-value=9.3e-15  Score=100.92  Aligned_cols=85  Identities=36%  Similarity=0.550  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCC-CCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD-KGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~-~g~~i~Ptii~~v~~~~   81 (87)
                      +++|.++|++.++++++|+|.+.++++||+++..+++++.++++++.++|+++++||..+.. .|+|++|||+.++++++
T Consensus       252 ~~~~~~~L~~~l~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~gg~~~~~~~g~~~~Ptv~~~~~~~~  331 (432)
T cd07078         252 YDEFVERLVERVKALKVGNPLDPDTDMGPLISAAQLDRVLAYIEDAKAEGAKLLCGGKRLEGGKGYFVPPTVLTDVDPDM  331 (432)
T ss_pred             HHHHHHHHHHHHHccCcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCcEEccEEEecCCCCC
Confidence            47899999999999999999999999999999999999999999999999999998876422 48999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      +++++|
T Consensus       332 ~~~~~E  337 (432)
T cd07078         332 PIAQEE  337 (432)
T ss_pred             hhhhCC
Confidence            999987

The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer

>KOG2455|consensus

Probab=99.59  E-value=4.8e-15  Score=102.15  Aligned_cols=86  Identities=19%  Similarity=0.332  Sum_probs=78.4

Q ss_pred             ChhHHHHHHHHhhccccccCC-CCCCCCccccCCHHHHHHHHHHHHHHHHC-CCeEEeCCcccCCCCceEeeEEEeeCCC
Q psy5845           2 HWTSAAVFTKDLDKTNYVTQG-LRAGTIWGRKIDKEQMDKILEFIESGKSQ-GAQLVAGGGRAGDKGFYVQPTVFANVRD   79 (87)
Q Consensus         2 ~~~~~~~~l~~~~~~~~~g~~-~~~~~~~gpli~~~~~~rv~~~l~~a~~~-Ga~i~~gg~~~~~~g~~i~Ptii~~v~~   79 (87)
                      .|+.+.+.|.+..+++++|+| .+..+++|++|+.+.|+|+..+|+.|+.. -..|++||.+++..|+|+.|||+..-++
T Consensus       357 ~wp~i~e~l~~~~~q~~igd~~~d~~~f~gavIh~~sF~rl~k~le~ak~~~~leiL~GGk~DdS~G~FV~PTiv~~kdP  436 (561)
T KOG2455|consen  357 LWPQIREELVEEHSQLKIGDPVIDFSTFIGAVIHDKSFARLKKVLEHAKKDPELEILAGGKCDDSTGYFVEPTIVLSKDP  436 (561)
T ss_pred             hcHHHHHHHHHHHhhcccCCccccccchhhhhccHHHHHHHHHHHHhhccCccceeeecCcccCCCCeeecceEEEccCC
Confidence            489999999999999999997 67789999999999999999999999753 3678999999888999999999999999


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      .+++|.||
T Consensus       437 ~~pim~ee  444 (561)
T KOG2455|consen  437 KDPIMTEE  444 (561)
T ss_pred             Ccchhhhh
Confidence            99999987

>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like

Probab=99.59  E-value=1.2e-14  Score=100.84  Aligned_cols=80  Identities=26%  Similarity=0.374  Sum_probs=72.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++++++|     ++++||++++.+++++.+++++++++|+++++||..+. ..++|+.|||+.++++++
T Consensus       257 ~~~f~~~l~~~~~~~~~g-----~~~~gp~i~~~~~~~~~~~i~~a~~~ga~~~~gg~~~~~~~~~~~~Ptvl~~~~~~~  331 (432)
T cd07105         257 ADEFVEKLKAAAEKLFAG-----PVVLGSLVSAAAADRVKELVDDALSKGAKLVVGGLADESPSGTSMPPTILDNVTPDM  331 (432)
T ss_pred             HHHHHHHHHHHHHhhcCC-----CCcccccCCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCeEEeeEEEecCCCCC
Confidence            578899999999999887     46899999999999999999999999999999987542 358999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .++++|
T Consensus       332 ~~~~eE  337 (432)
T cd07105         332 DIYSEE  337 (432)
T ss_pred             HHHhCC
Confidence            999998

Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.

>PTZ00381 aldehyde dehydrogenase family protein; Provisional

Probab=99.57  E-value=1.7e-14  Score=101.66  Aligned_cols=80  Identities=21%  Similarity=0.300  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|++.+++++ |++.+.++++|||||.+|++|+.++++   ++|+++++||..+ ..++|++|||+.+++++++
T Consensus       262 ~d~f~~~l~~~~~~~~-g~~~~~~~~~gpli~~~~~~ri~~~i~---~~ga~~~~gG~~~-~~~~~i~Ptvl~~v~~~~~  336 (493)
T PTZ00381        262 KDKFIEALKEAIKEFF-GEDPKKSEDYSRIVNEFHTKRLAELIK---DHGGKVVYGGEVD-IENKYVAPTIIVNPDLDSP  336 (493)
T ss_pred             HHHHHHHHHHHHHHHh-CCCCccCCCcCCCCCHHHHHHHHHHHH---hCCCcEEECCCcC-CCCCeEeeEEEecCCCCCh
Confidence            5788889999999985 666677889999999999999999996   3689999998764 4688999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +|+||
T Consensus       337 i~~eE  341 (493)
T PTZ00381        337 LMQEE  341 (493)
T ss_pred             HHhcc
Confidence            99998

>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain)

Probab=99.56  E-value=2.6e-14  Score=100.90  Aligned_cols=83  Identities=24%  Similarity=0.196  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCc---ccCCCCceEeeEEEeeCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG---RAGDKGFYVQPTVFANVRD   79 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~---~~~~~g~~i~Ptii~~v~~   79 (87)
                      |++|.++|++.++++++|+|.+.+++|||++++.+++++.++++++++.|++++.++.   .....|+|++|||+.+  .
T Consensus       319 ~d~f~~~L~~~~~~~~vG~p~~~~~~~Gpli~~~~~~~~~~~i~~a~~~Ga~l~~~~~~~~~~~~~g~f~~PTvl~~--~  396 (500)
T TIGR01238       319 ADRVLTMIQGAMQELKVGVPHLLTTDVGPVIDAEAKQNLLAHIEHMSQTQKKIAQLTLDDSRACQHGTFVAPTLFEL--D  396 (500)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCeeEcCEEEcc--C
Confidence            5789999999999999999999999999999999999999999999999998874322   1113589999999974  5


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      ++.++++|
T Consensus       397 ~~~~~~eE  404 (500)
T TIGR01238       397 DIAELSEE  404 (500)
T ss_pred             CchHhhCC
Confidence            78889887

This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.

>KOG2452|consensus

Probab=99.56  E-value=1.2e-14  Score=101.58  Aligned_cols=84  Identities=31%  Similarity=0.476  Sum_probs=79.5

Q ss_pred             hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCcc
Q psy5845           4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKI   83 (87)
Q Consensus         4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i   83 (87)
                      ++|-.++++.++++++|+|++.+++-||....+|+.++..|++.+.+.||++++||......|+|++|||++|+.+++-+
T Consensus       700 d~fv~~~vee~~~~~ig~pldr~t~hgpqnh~ahl~kl~ey~~~~v~~ga~~~~gg~~~~r~g~~f~pti~s~i~d~~f~  779 (881)
T KOG2452|consen  700 DEFVRRVVEEVRKMKVGNPLDRDTDHGPQNHHAHLVKLMEYCQHGVKEGATLVCGGNQVPRPGFFFEPTVFTDVEDHMFI  779 (881)
T ss_pred             HHHHHHHHHHHHhhccCCcccccccCCchhHHHHHHHHHHHHHHHhccCcEEEECCccCCCCCcccCCeeecccchhhhh
Confidence            67888999999999999999999999999999999999999999999999999999887678999999999999999988


Q ss_pred             hhcC
Q psy5845          84 AREE   87 (87)
Q Consensus        84 ~~eE   87 (87)
                      .+||
T Consensus       780 a~ee  783 (881)
T KOG2452|consen  780 AKEE  783 (881)
T ss_pred             hhcc
Confidence            8886

>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like

Probab=99.55  E-value=2.1e-14  Score=100.25  Aligned_cols=78  Identities=24%  Similarity=0.405  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.+++++.|+|.+ ++++||+||+.+++++.+++++     +++++||..+ ..|+|+.|||+.++++++.
T Consensus       253 ~d~f~~~L~~~~~~~~~g~p~~-~~~~gpli~~~~~~~i~~~i~~-----a~~~~gG~~~-~~g~~~~Ptvl~~v~~~~~  325 (449)
T cd07136         253 KEKFIKELKEEIKKFYGEDPLE-SPDYGRIINEKHFDRLAGLLDN-----GKIVFGGNTD-RETLYIEPTILDNVTWDDP  325 (449)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCC-CCCccCcCCHHHHHHHHHHHhc-----ceEEECCCcC-CCCCEEeeEEEecCCCcCh
Confidence            5789999999999999898886 7899999999999999999975     3788998754 3689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       326 ~~~eE  330 (449)
T cd07136         326 VMQEE  330 (449)
T ss_pred             HHhcc
Confidence            99998

Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.

>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed

Probab=99.52  E-value=7.1e-14  Score=105.14  Aligned_cols=82  Identities=24%  Similarity=0.185  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~   80 (87)
                      |+.|.++|+++++++++|+|.+.++++||+|++.+++++.++|+++++ |+++++||..++  ..|+|+.|||+..  .+
T Consensus       843 ~d~fl~~L~~~~~~l~vGdp~d~~t~~GPvI~~~a~~~l~~~I~~a~~-ga~vl~gg~~~~~~~~G~fv~PTvi~~--~~  919 (1038)
T PRK11904        843 ADRVIEMLKGAMAELKVGDPRLLSTDVGPVIDAEAKANLDAHIERMKR-EARLLAQLPLPAGTENGHFVAPTAFEI--DS  919 (1038)
T ss_pred             HHHHHHHHHHHHHhccCCCcccccCCccCCCCHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCCceEEeeEEEcc--CC
Confidence            688999999999999999999999999999999999999999999876 899999987542  2589999999963  46


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      +.++++|
T Consensus       920 ~~~~~eE  926 (1038)
T PRK11904        920 ISQLERE  926 (1038)
T ss_pred             cHHhCCC
Confidence            7788887

>KOG2453|consensus

Probab=99.52  E-value=7.2e-14  Score=94.17  Aligned_cols=84  Identities=19%  Similarity=0.295  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |+.+.++|+.+.+.+++|+|++.++.+|||-++++..+...-++.+++.|+++++||+..+.+|+|+.|||++ +..|++
T Consensus       312 yd~vlerlkkayaq~~ignpld~ntl~gplht~qav~~f~~~veeak~~ggki~yggkv~er~gnfveptivt-l~hda~  390 (507)
T KOG2453|consen  312 YDQVLERLKKAYAQFEIGNPLDSNTLIGPLHTQQAVGKFKASVEEAKASGGKIEYGGKVLERDGNFVEPTIVT-LKHDAP  390 (507)
T ss_pred             HHHHHHHHHHHHHheecCCcCCCCceeccccCHHHHHHHHHHHHHHHhcCCeEEECCEeeccCCCcccceEEE-ecCCcc
Confidence            5889999999999999999999999999999999999999999999999999999999776789999999997 888888


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +..+|
T Consensus       391 vv~~e  395 (507)
T KOG2453|consen  391 VVLRE  395 (507)
T ss_pred             hhhhh
Confidence            87765

>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed

Probab=99.49  E-value=1.7e-13  Score=104.65  Aligned_cols=83  Identities=18%  Similarity=0.210  Sum_probs=72.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCCceEeeEEEeeCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRD   79 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g~~i~Ptii~~v~~   79 (87)
                      |+.|.+.|+++++++++|+|.+.++++||+|++.+++++.++|++++++|++++.|+....   ..|+|++||||..  .
T Consensus       930 ad~fl~~L~~a~~~l~vGdP~~~~tdvGPvId~~a~~~i~~~I~~a~~~G~~v~~g~~~~~~~~~~G~fv~PTIi~~--~ 1007 (1318)
T PRK11809        930 ADRTLKMLRGAMAECRMGNPDRLSTDIGPVIDAEAKANIERHIQAMRAKGRPVFQAARENSEDWQSGTFVPPTLIEL--D 1007 (1318)
T ss_pred             HHHHHHHHHHHHHhcCCCCcccccCCcCCCCCHHHHHHHHHHHHHHHHcCCEEEecCCCCCCCCCCCeEEeeEEEec--c
Confidence            5788899999999999999999999999999999999999999999999999988764321   3589999999974  4


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      ++.++++|
T Consensus      1008 ~~~~l~eE 1015 (1318)
T PRK11809       1008 SFDELKRE 1015 (1318)
T ss_pred             chhhhcCc
Confidence            56778777

>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins

Probab=99.49  E-value=2.1e-13  Score=95.04  Aligned_cols=78  Identities=22%  Similarity=0.388  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|++.+++++.|++ +.++++||++++++++++.++++     ++++++||..+ ..++|++|||+.+++++++
T Consensus       253 ~d~f~~~l~~~~~~~~~g~~-~~~~~~gpli~~~~~~~v~~~i~-----~a~~~~gg~~~-~~~~~~~Ptvl~~v~~~~~  325 (443)
T cd07132         253 QEKFVEALKKTLKEFYGEDP-KESPDYGRIINDRHFQRLKKLLS-----GGKVAIGGQTD-EKERYIAPTVLTDVKPSDP  325 (443)
T ss_pred             HHHHHHHHHHHHHHhcCCCC-CcccccCCcCCHHHHHHHHHHHh-----CCEEEeCCccC-CCCCEEeeEEEeCCCCCCh
Confidence            47788889888989887877 67889999999999999999987     35888988754 3689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       326 ~~~eE  330 (443)
T cd07132         326 VMQEE  330 (443)
T ss_pred             HHhcc
Confidence            99998

NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.

>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed

Probab=99.46  E-value=3.2e-13  Score=102.79  Aligned_cols=83  Identities=23%  Similarity=0.210  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~   81 (87)
                      |+.|.++|+++++++++|+|.+.++++||+|++.+++++.++|++++++|+.++.|+.... ..|+|+.|||+. + +++
T Consensus       835 ~d~f~e~L~~~~~~l~vGdP~d~~t~~GPvId~~a~~~i~~~I~~a~~~G~~l~~g~~~~~~~~G~fv~PTVl~-~-~~~  912 (1208)
T PRK11905        835 ADRVLTMLKGAMDELRIGDPWRLSTDVGPVIDAEAQANIEAHIEAMRAAGRLVHQLPLPAETEKGTFVAPTLIE-I-DSI  912 (1208)
T ss_pred             HHHHHHHHHHHHHHhcCCCchhccCCccCccCHHHHHHHHHHHHHHHHCCCEEEEccCCCCCCCCeEEeeEEEe-c-CCh
Confidence            6889999999999999999999999999999999999999999999999998877653221 368999999997 3 467


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .++++|
T Consensus       913 ~~~~eE  918 (1208)
T PRK11905        913 SDLERE  918 (1208)
T ss_pred             HHhcCC
Confidence            788887

>KOG2456|consensus

Probab=99.46  E-value=4.6e-14  Score=96.53  Aligned_cols=77  Identities=17%  Similarity=0.303  Sum_probs=63.3

Q ss_pred             HHHHHHH----HhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCC
Q psy5845           5 SAAVFTK----DLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDD   80 (87)
Q Consensus         5 ~~~~~l~----~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~   80 (87)
                      +++.+|.    ..++++ +|+....+.+++++||+.||+|+.++++.-    .+++.||..+ ...+||+|||+.||+++
T Consensus       255 ~~~~kli~alk~~l~eF-YG~n~~eS~d~sRiIn~~hf~Rl~~ll~~~----~kv~~Gg~~d-~~d~~I~PTIL~DV~~~  328 (477)
T KOG2456|consen  255 SIQPKLIDALKSTLKEF-YGENPKESKDLSRIINQRHFQRLSALLDET----GKVAIGGESD-ESDRYIAPTILLDVPED  328 (477)
T ss_pred             hhhHHHHHHHHHHHHHH-hCCCccccccHHHHhhHHHHHHHHHHhcCC----CceecCCccc-hhhcccCCeEEecCCCC
Confidence            4455554    445566 576667789999999999999999998732    6899999876 56789999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      +++|+||
T Consensus       329 ~p~M~eE  335 (477)
T KOG2456|consen  329 SPVMQEE  335 (477)
T ss_pred             Chhhhhh
Confidence            9999998

>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like

Probab=99.43  E-value=9e-13  Score=94.04  Aligned_cols=79  Identities=14%  Similarity=0.118  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCC-ceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKG-FYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g-~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++ +|+|.+..+++|||||+.+++|+.+    +++.|+ +++||..+.   ..| +|+.|||+.+++
T Consensus       361 ~d~f~~~L~~~~~~l-~Gdp~~~~~~~Gpli~~~~~~ri~~----a~~~g~-vl~gg~~~~~~~~~g~~~~~Ptvl~~~~  434 (549)
T cd07127         361 FDEVAADLAAAIDGL-LADPARAAALLGAIQSPDTLARIAE----ARQLGE-VLLASEAVAHPEFPDARVRTPLLLKLDA  434 (549)
T ss_pred             HHHHHHHHHHHHHHh-cCCccccccccCCcCCHHHHHHHHH----HHhCCC-EEEcCCcCCCcCCCCceEEeCEEEEeCC
Confidence            899999999999999 8999888899999999999999865    445565 777775431   134 567999999888


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      +++.++++|
T Consensus       435 ~d~~i~~eE  443 (549)
T cd07127         435 SDEAAYAEE  443 (549)
T ss_pred             CCCHHHcCC
Confidence            899999998

Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.

>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins

Probab=99.40  E-value=1.4e-12  Score=90.52  Aligned_cols=78  Identities=23%  Similarity=0.405  Sum_probs=67.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.+++++.|+| ++++.+||++++.+++++.++++++     ++++||..+ ..|+|+.|||+.+++++++
T Consensus       253 ~d~f~~~L~~~~~~l~~~~~-~~~~~~gpli~~~~~~~~~~~i~~a-----~v~~gg~~~-~~g~~~~Ptvl~~~~~~~~  325 (426)
T cd07087         253 KDELIEELKKAIKEFYGEDP-KESPDYGRIINERHFDRLASLLDDG-----KVVIGGQVD-KEERYIAPTILDDVSPDSP  325 (426)
T ss_pred             HHHHHHHHHHHHHHHcCCCC-ccCCCcCCCCCHHHHHHHHHHHhcc-----eEEeCCccC-CCCCEEeeEEEecCCCCCH
Confidence            57889999999999975555 4688999999999999999999754     788888654 3589999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       326 ~~~eE  330 (426)
T cd07087         326 LMQEE  330 (426)
T ss_pred             HHhcc
Confidence            99987

ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.

>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN

Probab=99.37  E-value=2.8e-12  Score=91.54  Aligned_cols=79  Identities=13%  Similarity=0.130  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc---CCCC-ceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA---GDKG-FYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~---~~~g-~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++ +|+|.+.++++|||||+.+++|+    +++.+.| ++++||...   ...| +|++|||+....
T Consensus       361 ~def~~~L~~~~~~l-vGdp~~~~~~~Gplis~~~~~ri----~~a~~~G-~v~~gG~~~~~~~~~g~~~~~Ptvl~~~~  434 (551)
T TIGR02288       361 YDEVAADLATAIDGL-LGDPARATAVLGAIQSPDTLARI----AEARALG-EVLLASTKIEHPEFPGARVRTPLLLKCDA  434 (551)
T ss_pred             HHHHHHHHHHHHHHh-cCCcccccccccCcCCHHHHHHH----HHHHhCC-CEEEcCccCCCCCCCCCEEeccEEEEcCC
Confidence            799999999999999 89998888999999999999996    5566678 566666432   1134 689999995333


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      .+|.+++||
T Consensus       435 ~d~~i~~eE  443 (551)
T TIGR02288       435 ADEAAYMQE  443 (551)
T ss_pred             CCCHHHhCC
Confidence            489999998

This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.

>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12

Probab=99.36  E-value=5.1e-12  Score=89.22  Aligned_cols=78  Identities=15%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHH-CCCeEEeCCcccCC----CC-ceEeeEEEee-
Q psy5845           4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKS-QGAQLVAGGGRAGD----KG-FYVQPTVFAN-   76 (87)
Q Consensus         4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~-~Ga~i~~gg~~~~~----~g-~~i~Ptii~~-   76 (87)
                      ++|.++|++.++++++|+     +++||+||.. .+++.++++++++ +|+++++||..+..    .+ .|++|||+.+ 
T Consensus       297 d~f~~~l~~~~~~~~~g~-----~~~Gpli~~~-~~~v~~~i~~a~~~~Ga~~l~GG~~~~~~~~~~~~~~~~PTvl~~~  370 (489)
T cd07126         297 AGILDKLKALAEQRKLED-----LTIGPVLTWT-TERILDHVDKLLAIPGAKVLFGGKPLTNHSIPSIYGAYEPTAVFVP  370 (489)
T ss_pred             HHHHHHHHHHHHhcccCC-----CcCCCCcCHH-HHHHHHHHHHHHhCCCCEEEeCCcccccccccCCcceecCeEEEec
Confidence            789999999999998764     4799999998 9999999999997 89999999975422    23 3899999952 


Q ss_pred             -----CCCCCcchhcC
Q psy5845          77 -----VRDDMKIAREE   87 (87)
Q Consensus        77 -----v~~~~~i~~eE   87 (87)
                           ++++|.+++||
T Consensus       371 ~~~~~~~~~~~i~~eE  386 (489)
T cd07126         371 LEEIAIEENFELVTTE  386 (489)
T ss_pred             cccccCCCCCHHHhCC
Confidence                 56799999998

Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.

>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like

Probab=99.18  E-value=7.6e-11  Score=82.34  Aligned_cols=76  Identities=18%  Similarity=0.175  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHC-CCeEEeCCcccC------CCCceEeeEEEe
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQ-GAQLVAGGGRAG------DKGFYVQPTVFA   75 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~-Ga~i~~gg~~~~------~~g~~i~Ptii~   75 (87)
                      +++|.++|++.++++++|     ++.+||++++..    ..+++++.+. |+++++||....      ..|+|++|||+.
T Consensus       256 ~~~f~~~l~~~~~~~~~g-----~~~~gpl~~~~~----~~~i~~a~~~gga~~~~gg~~~~~~~~~~~~g~~~~Ptvl~  326 (442)
T cd07084         256 KTPLVEKLKALLARRKLE-----DLLLGPVQTFTT----LAMIAHMENLLGSVLLFSGKELKNHSIPSIYGACVASALFV  326 (442)
T ss_pred             HHHHHHHHHHHHHhcccC-----ccccChhhhHHH----HHHHHHHHhcCCcEEEeCCcccccCCCCCcCCcccCCeEEE
Confidence            478999999999999988     578999987654    4556666667 589999986421      248999999999


Q ss_pred             eCCCCC---cchhcC
Q psy5845          76 NVRDDM---KIAREE   87 (87)
Q Consensus        76 ~v~~~~---~i~~eE   87 (87)
                      ++++++   .++++|
T Consensus       327 ~~~~~~~~~~i~~eE  341 (442)
T cd07084         327 PIDEILKTYELVTEE  341 (442)
T ss_pred             ecCcccccchHHhee
Confidence            999987   999987

ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.

>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase

Probab=99.12  E-value=3.5e-10  Score=79.25  Aligned_cols=74  Identities=16%  Similarity=0.120  Sum_probs=59.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHC-CCeEEeCCcccCCCCceEeeEEEeeCC---
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQ-GAQLVAGGGRAGDKGFYVQPTVFANVR---   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~-Ga~i~~gg~~~~~~g~~i~Ptii~~v~---   78 (87)
                      |++|.++|++.++++++|          |+++..+.+++.++++++.++ |+++++||... ..++|++|||+.+.+   
T Consensus       273 ~d~f~~~l~~~~~~~~~g----------~~~~~~~~~~~~~~i~~a~~~~ga~~l~gg~~~-~~g~~~~Ptvl~~~~~~~  341 (454)
T cd07129         273 GDAFIAALAEALAAAPAQ----------TMLTPGIAEAYRQGVEALAAAPGVRVLAGGAAA-EGGNQAAPTLFKVDAAAF  341 (454)
T ss_pred             HHHHHHHHHHHHhccCCC----------CCcChHHHHHHHHHHHHHHhcCCcEEEeCCCcC-CCCCccCCEEEEccCCcc
Confidence            688999999999988754          555666667777778888888 99999999754 468999999998655   


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      +++.++++|
T Consensus       342 ~~~~i~~~E  350 (454)
T cd07129         342 LADPALQEE  350 (454)
T ss_pred             ccchhhccc
Confidence            689999988

Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.

>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins

Probab=98.68  E-value=2.7e-08  Score=69.72  Aligned_cols=58  Identities=16%  Similarity=0.260  Sum_probs=48.2

Q ss_pred             cccCCHHHHHHHHHHHHHHHHCCCeEEeCCc-c-cCCCCceEeeE---EEeeCC--CCCcchhcC
Q psy5845          30 GRKIDKEQMDKILEFIESGKSQGAQLVAGGG-R-AGDKGFYVQPT---VFANVR--DDMKIAREE   87 (87)
Q Consensus        30 gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~-~-~~~~g~~i~Pt---ii~~v~--~~~~i~~eE   87 (87)
                      ||+++..+++++.++++++.++|++++.|+. . ....|+|++||   ++.+++  .+|.+++||
T Consensus       263 gpli~~~~~~~v~~~i~~a~~~Ga~~~gg~~~~~~~~~G~~~~pt~~~i~~~~~~~~~~~i~~eE  327 (439)
T cd07081         263 AYKLTAEELQQVQPVILKNGDVNRDIVGQDAYKIAAAAGLKVPQETRILIGEVTSLAEHEPFAHE  327 (439)
T ss_pred             CccCCHHHHHHHHHHHHhcCCcCCcccCCCHHHHHHHcCCccCCCceEEEEecCCCCCCchhhhC
Confidence            8999999999999999999999997754332 1 11258899998   999988  999999998

Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.

>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating)

Probab=98.62  E-value=6.1e-08  Score=68.74  Aligned_cols=58  Identities=12%  Similarity=0.071  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHh-------hccccccCC-CCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845           3 WTSAAVFTKDL-------DKTNYVTQG-LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG   60 (87)
Q Consensus         3 ~~~~~~~l~~~-------~~~~~~g~~-~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~   60 (87)
                      |++|.++|++.       .+.+++|+| .++++.+||+++.++++++.++++.++.+|+++++||.
T Consensus       260 ~d~f~~~L~~~g~~~~~~~~~~~vg~~~~~~~~~~gp~i~~~~~~~i~~~i~~av~~gakll~gg~  325 (488)
T TIGR02518       260 KDAVVEELKKQGGYFLTAEEAEKLGKFILRPNGTMNPQIVGKSPQVIANLAGLTVPEDAKVLIGEQ  325 (488)
T ss_pred             HHHHHHHHHHhhhhhcCHHHHHhhcccccCCCCCcCcccccchHHHHHHHhccccCCCCEEEEeCC
Confidence            46788888887       888899996 56788999999999999999999999999999999885

>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like

Probab=98.41  E-value=2.6e-07  Score=64.62  Aligned_cols=73  Identities=18%  Similarity=0.196  Sum_probs=54.7

Q ss_pred             hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHC--CCeEEeCCccc---CCCCceEe---eEEEe
Q psy5845           4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQ--GAQLVAGGGRA---GDKGFYVQ---PTVFA   75 (87)
Q Consensus         4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~--Ga~i~~gg~~~---~~~g~~i~---Ptii~   75 (87)
                      ++++++|++.+...  +         ..+++.++++++.++++++.+.  |++++.||...   ...|+|++   |||+.
T Consensus       250 ~~i~d~f~~~L~~~--~---------~~~i~~~~~~~v~~~i~~a~~~~~ga~~~~gg~~~~~~~~~G~~~~~~~ptil~  318 (429)
T cd07121         250 DSVADYLIAAMQRN--G---------AYVLNDEQAEQLLEVVLLTNKGATPNKKWVGKDASKILKAAGIEVPADIRLIIV  318 (429)
T ss_pred             HHHHHHHHHHHHHC--C---------CEEcCHHHHHHHHHhhcccCCCccccccccCcCHHHHHHHcCCCCCCCCeEEEE
Confidence            34556666655443  1         1489999999999999998864  68999887531   12477877   59999


Q ss_pred             eCCCCCcchhcC
Q psy5845          76 NVRDDMKIAREE   87 (87)
Q Consensus        76 ~v~~~~~i~~eE   87 (87)
                      +++++|+++++|
T Consensus       319 ~v~~~~~i~~eE  330 (429)
T cd07121         319 ETDKDHPFVVEE  330 (429)
T ss_pred             ecCCCCCccccc
Confidence            999999999988

Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.

>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]

Probab=98.31  E-value=2.1e-06  Score=61.75  Aligned_cols=68  Identities=25%  Similarity=0.255  Sum_probs=53.6

Q ss_pred             HHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEe
Q psy5845           8 VFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFA   75 (87)
Q Consensus         8 ~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~   75 (87)
                      .-|+.++.++++|+|..-.++.||+|+..+...+.++|+..+..|-.+..-..... ..|.|++||+|.
T Consensus       400 ~mLKGAm~el~~G~p~~l~tDVGPVIdaEAk~~i~~Hi~~mr~~gr~v~q~~~~~~~q~GtFv~Ptl~E  468 (769)
T COG4230         400 TMLKGAMAELRVGNPDRLTTDVGPVIDAEAKANIEKHIQTMRSKGRLVHQAAAPNSLQKGTFVAPTLIE  468 (769)
T ss_pred             HHHHHHHHHhccCCccceeccccccccHHHHHHHHHHHHHHHhcccchhhccCCCccCCceeeCceeEE
Confidence            33667778999999998899999999999999999999998887654432221111 369999999995

>PRK15398 aldehyde dehydrogenase EutE; Provisional

Probab=98.24  E-value=1.7e-06  Score=61.10  Aligned_cols=73  Identities=15%  Similarity=0.102  Sum_probs=52.7

Q ss_pred             hHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcc---cCCCCceE---eeEEEeeC
Q psy5845           4 TSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR---AGDKGFYV---QPTVFANV   77 (87)
Q Consensus         4 ~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~---~~~~g~~i---~Ptii~~v   77 (87)
                      ++++++|.+.+.+.  +         ++++++.+++++.++++++.+++++++.|+..   ....|+++   +|||+.++
T Consensus       282 ~si~d~f~~~l~~~--~---------~~li~~~~~~~v~~~l~~~~~~~~~~~~g~~~~~i~~~~G~~~~~~~~tvl~~v  350 (465)
T PRK15398        282 DSVADELMRLMEKN--G---------AVLLTAEQAEKLQKVVLKNGGTVNKKWVGKDAAKILEAAGINVPKDTRLLIVET  350 (465)
T ss_pred             HHHHHHHHHHHHHc--C---------CccCCHHHHHHHHHHHhhcccccchhhhCCCHHHHHHhCCCCCCCCCCEEEecC
Confidence            45666666666553  1         26999999999999998654456677776542   11235555   48999999


Q ss_pred             CCCCcchhcC
Q psy5845          78 RDDMKIAREE   87 (87)
Q Consensus        78 ~~~~~i~~eE   87 (87)
                      ++++++++||
T Consensus       351 ~~d~~i~~eE  360 (465)
T PRK15398        351 DANHPFVVTE  360 (465)
T ss_pred             CCCCchhccc
Confidence            9999999998

>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like

Probab=97.85  E-value=6.8e-06  Score=57.76  Aligned_cols=57  Identities=11%  Similarity=0.098  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHhhccc-------cccCC-CCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCC
Q psy5845           3 WTSAAVFTKDLDKTN-------YVTQG-LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG   59 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~-------~~g~~-~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg   59 (87)
                      |++|.++|++....+       ++|++ .+.++.+||+++..+.+++..++..+..+|+++++++
T Consensus       251 ~d~f~~~l~~~~~~l~~~~~~~~v~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~ga~vl~~~  315 (436)
T cd07122         251 YDEVRAELKRRGAYFLNEEEKEKLEKALFDDGGTLNPDIVGKSAQKIAELAGIEVPEDTKVLVAE  315 (436)
T ss_pred             HHHHHHHHHHhcceecCHHHHHHHHHHhhcCCCCcCccccCcCHHHHHHHcCCCCCCCCeEEEEe
Confidence            578888888888877       77876 3557789999999999998888887777888887765

Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.

>KOG2449|consensus

Probab=97.62  E-value=0.00011  Score=44.33  Aligned_cols=71  Identities=24%  Similarity=0.230  Sum_probs=52.4

Q ss_pred             HHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHH-HCCCeEEeCCcccCCCCceEeeEEEeeCCCCCcchhc
Q psy5845           8 VFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGK-SQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIARE   86 (87)
Q Consensus         8 ~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~-~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i~~e   86 (87)
                      ..+++.++.+++-+...++++.     .+...||..+++.-. ..|..+...|.   ..++|+.|||+. |+++|.+++|
T Consensus        13 ~~lve~ak~l~v~~g~kp~tD~-----~a~~~ri~~liqS~~~~~~r~~yl~~y---a~~~f~~~tiLs-vtP~ms~yke   83 (157)
T KOG2449|consen   13 PTLVEDAKVLKVNAGEKPQTDK-----YAPKVRIDKLIQSEDPLDGRFIYLPGY---AEGNFVGPTILS-VTPNMSCYKE   83 (157)
T ss_pred             HHHHHhhhheEeccCCCCCccc-----hhHHHHHHHHhcCcCccCCceEEeecc---ccCCcccceEEE-ecCCcceeHh
Confidence            6789999999988777777776     667788888887421 22333333332   468899999998 9999999988


Q ss_pred             C
Q psy5845          87 E   87 (87)
Q Consensus        87 E   87 (87)
                      |
T Consensus        84 e   84 (157)
T KOG2449|consen   84 E   84 (157)
T ss_pred             h
Confidence            6

>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional

Probab=97.52  E-value=8.1e-05  Score=56.15  Aligned_cols=71  Identities=15%  Similarity=0.182  Sum_probs=50.0

Q ss_pred             HHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeE-EeCCccc---CCCCceEeeEE------E
Q psy5845           5 SAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQL-VAGGGRA---GDKGFYVQPTV------F   74 (87)
Q Consensus         5 ~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i-~~gg~~~---~~~g~~i~Pti------i   74 (87)
                      +++++|++.+.+.  |         +++++..|++|+.++++++...|++. +.||...   ...|+|++||+      +
T Consensus       262 ~i~d~f~~~l~~~--g---------~~l~~~~~~~~v~~~i~~a~~~~~~~~~~g~~~~~~~~~~G~~~~p~~~~~i~~l  330 (862)
T PRK13805        262 EIYDEVKEEFASH--G---------AYFLNKKELKKLEKFIFGKENGALNADIVGQSAYKIAEMAGFKVPEDTKILIAEV  330 (862)
T ss_pred             hhHHHHHHHHHHh--C---------CeeCCHHHHHHHHHHHhhccCCCcCccccCCCHHHHHHHcCCCCCCCCeEEEEec
Confidence            4555666555443  1         58999999999999999886555433 4455321   12478889987      7


Q ss_pred             eeCCCCCcchhc
Q psy5845          75 ANVRDDMKIARE   86 (87)
Q Consensus        75 ~~v~~~~~i~~e   86 (87)
                      .++++++++++|
T Consensus       331 ~~v~~~~~~~~E  342 (862)
T PRK13805        331 KGVGESEPLSHE  342 (862)
T ss_pred             CCCCCCCcchhc
Confidence            789999999885

>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19

Probab=87.24  E-value=0.66  Score=32.56  Aligned_cols=48  Identities=10%  Similarity=0.095  Sum_probs=33.3

Q ss_pred             cCCHHHHHHHHHHHH-HHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCcchhcC
Q psy5845          32 KIDKEQMDKILEFIE-SGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE   87 (87)
Q Consensus        32 li~~~~~~rv~~~l~-~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i~~eE   87 (87)
                      ++.+.-++++...+. ...+.|++++ +|...   ..|++||    ++++|.++++|
T Consensus       258 ~V~~si~d~f~~~l~~~~~~~ga~~~-~g~~~---~~~~~pt----v~~d~~i~~eE  306 (406)
T cd07079         258 LVHRDIAEEFLPKLAEALREAGVELR-GDEET---LAILPGA----KPATEEDWGTE  306 (406)
T ss_pred             EEeHHHHHHHHHHHHHHHHHCCCEEe-cCHHH---HHhcccc----cCCCcchhhhh
Confidence            567777888766554 4456788865 44321   1388888    78899999987

Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).

>PLN02418 delta-1-pyrroline-5-carboxylate synthase

Probab=87.21  E-value=0.97  Score=34.19  Aligned_cols=45  Identities=20%  Similarity=0.372  Sum_probs=31.7

Q ss_pred             cCCHHHHH--HHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCcchhcC
Q psy5845          32 KIDKEQMD--KILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE   87 (87)
Q Consensus        32 li~~~~~~--rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i~~eE   87 (87)
                      ++.+.-++  ++..++++|+++|+++ +||...  .|      ++. + ++|.+++||
T Consensus       551 lVh~~i~d~G~~~~~i~~a~~~Ga~l-~Gg~~~--~g------~l~-~-~~~~i~~eE  597 (718)
T PLN02418        551 LVHKDLVQNGGLNDLLVALRSAGVTL-YGGPRA--SK------LLN-I-PEAQSFHHE  597 (718)
T ss_pred             EEeccccccccHHHHHHHHHHCCCEE-ECCccc--cC------eeC-C-CCchhhhCC
Confidence            34444444  4899999999999999 677543  23      233 3 679999988

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	87
1bxs_A	501	Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad		4e-17
1o9j_A	501	The X-Ray Crystal Structure Of Eta-Crystallin Lengt		2e-16
1bi9_A	499	Retinal Dehydrogenase Type Two With Nad Bound Lengt		7e-15
2onn_A	500	Arg475gln Mutant Of Human Mitochondrial Aldehyde De		1e-13
1cw3_A	494	Human Mitochondrial Aldehyde Dehydrogenase Complexe		1e-13
1o05_A	500	Apo Form Of Human Mitochondrial Aldehyde Dehydrogen		1e-13
4fr8_A	500	Crystal Structure Of Human Aldehyde Dehydrogenase-2		1e-13
3n80_A	500	Human Mitochondrial Aldehyde Dehydrogenase, Apo For		1e-13
1nzw_A	500	Cys302ser Mutant Of Human Mitochondrial Aldehyde De		1e-13
3n81_A	500	T244a Mutant Of Human Mitochondrial Aldehyde Dehydr		1e-13
3inl_A	500	Human Mitochondrial Aldehyde Dehydrogenase Asian Va		1e-13
1zum_A	500	Human Mitochondrial Aldehyde Dehydrogenase Asian Va		1e-13
1ag8_A	499	Aldehyde Dehydrogenase From Bovine Mitochondria Len		5e-13
3r31_A	517	Crystal Structure Of Betaine Aldehyde Dehydrogenase		9e-13
3i44_A	497	Crystal Structure Of Aldehyde Dehydrogenase From Ba		2e-11
2xdr_A	489	Crystallographic Structure Of Betaine Aldehyde Dehy		5e-11
2wox_A	489	Betaine Aldehyde Dehydrogenase From Pseudomonas Aer		5e-11
2wme_A	490	Crystallographic Structure Of Betaine Aldehyde Dehy		5e-11
2wme_C	490	Crystallographic Structure Of Betaine Aldehyde Dehy		6e-11
3zqa_A	490	Crystallographic Structure Of Betaine Aldehyde Dehy		6e-11
4a0m_A	496	Crystal Structure Of Betaine Aldehyde Dehydrogenase		2e-09
3b4w_A	495	Crystal Structure Of Mycobacterium Tuberculosis Ald		5e-09
3iwj_A	503	Crystal Structure Of Aminoaldehyde Dehydrogenase 2		9e-09
3rhm_A	517	Crystal Structure Of The E673q Mutant Of C-Terminal		1e-08
2o2p_A	517	Crystal Structure Of The C-Terminal Domain Of Rat 1		1e-08
4gnz_A	517	Crystal Structure Of The C707s Mutant Of C-terminal		1e-08
3rhj_A	517	Crystal Structure Of The E673a Mutant Of The C-Term		1e-08
3rhl_A	517	Crystal Structure Of The E673aC707A DOUBLE MUTANT O		1e-08
3rhr_A	517	Crystal Structure Of The C707a Mutant Of The C-Term		1e-08
4i8p_A	520	Crystal Structure Of Aminoaldehyde Dehydrogenase 1a		2e-08
4i8q_A	514	Structure Of The Aminoaldehyde Dehydrogenase 1 E260		1e-07
4i9b_A	517	Structure Of Aminoaldehyde Dehydrogenase 1 From Sol		1e-07
2bja_A	516	Crystal Analysis Of 1-Pyrroline-5-Carboxylate Dehyd		1e-07
1uzb_A	516	1-pyrroline-5-carboxylate Dehydrogenase Length = 51		3e-07
2bhp_A	516	Crystal Analysis Of 1-Pyrroline-5-Carboxylate Dehyd		3e-07
3iwk_A	503	Crystal Structure Of Aminoaldehyde Dehydrogenase 1		5e-07
3rjl_A	538	Crystal Structure Of 1-Pyrroline-5-Carboxylate Dehy		9e-07
3u4j_A	528	Crystal Structure Of Nad-Dependent Aldehyde Dehydro		1e-06
1t90_A	486	Crystal Structure Of Methylmalonate Semialdehyde De		2e-06
3qan_A	538	Crystal Structure Of 1-Pyrroline-5-Carboxylate Dehy		2e-06
3ty7_A	478	Crystal Structure Of Aldehyde Dehydrogenase Family		2e-06
1a4s_A	503	Betaine Aldehyde Dehydrogenase From Cod Liver Lengt		4e-06
2d4e_A	515	Crystal Structure Of The Hpcc From Thermus Thermoph		5e-06
3ek1_A	504	Crystal Structure Of Aldehyde Dehydrogenase From Br		1e-05
2w8n_A	487	The Crytal Structure Of The Oxidized Form Of Human		4e-05
2w8p_A	487	The Crystal Structure Of Human C340a Ssadh Length =		4e-05
4dal_A	498	Crystal Structure Of Putative Aldehyde Dehydrogenas		6e-05
3jz4_A	481	Crystal Structure Of E. Coli Nadp Dependent Enzyme		6e-05
3jz4_C	481	Crystal Structure Of E. Coli Nadp Dependent Enzyme		6e-05
3ifg_A	484	Crystal Structure Of Succinate-Semialdehyde Dehydro		6e-05
3ed6_A	520	1.7 Angstrom Resolution Crystal Structure Of Betain		1e-04
3r64_A	508	Crystal Structure Of A Nad-Dependent Benzaldehyde D		1e-04
2jg7_A	510	Crystal Structure Of Seabream Antiquitin And Elucid		2e-04
3k2w_A	497	Crystal Structure Of Betaine-Aldehyde Dehydrogenase		6e-04

>pdb|1BXS|A Chain A, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound Length = 501

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 51/65 (78%)
Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  G   G +IDKEQ +KIL+ IESGK +GA+L  GGG  G+KG+++QPTVF++V DDM+
Sbjct: 336 LTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMR 395
Query: 83  IAREE 87
           IA+EE
Sbjct: 396 IAKEE 400

>pdb|1O9J|A Chain A, The X-Ray Crystal Structure Of Eta-Crystallin Length = 501

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 50/65 (76%)
Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L  G   G +I+K Q +KI+E IESGK +GA+L  GGG  G+KG+++QPTVF+NV DDM+
Sbjct: 336 LTPGVNHGPQINKAQHNKIMELIESGKKEGAKLECGGGPWGNKGYFIQPTVFSNVTDDMR 395
Query: 83  IAREE 87
           IA+EE
Sbjct: 396 IAKEE 400

>pdb|1BI9|A Chain A, Retinal Dehydrogenase Type Two With Nad Bound Length = 499

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 47/58 (81%)
Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           G +IDK+Q +KILE I+SG ++GA+L  GG   G KGF+++PTVF+NV DDM+IA+EE
Sbjct: 341 GPQIDKKQYNKILELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEE 398

>pdb|2ONN|A Chain A, Arg475gln Mutant Of Human Mitochondrial Aldehyde Dehydrogenase, Apo Form Length = 500

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K+  V     + T  G ++D+ Q  KIL +I +GK +GA+L+ GGG A D+G+++QPTVF
Sbjct: 327 KSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVF 386
Query: 75  ANVRDDMKIAREE 87
            +V+D M IA+EE
Sbjct: 387 GDVQDGMTIAKEE 399

>pdb|1CW3|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Complexed With Nad+ And Mn2+ Length = 494

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K+  V     + T  G ++D+ Q  KIL +I +GK +GA+L+ GGG A D+G+++QPTVF
Sbjct: 321 KSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVF 380
Query: 75  ANVRDDMKIAREE 87
            +V+D M IA+EE
Sbjct: 381 GDVQDGMTIAKEE 393

>pdb|1O05|A Chain A, Apo Form Of Human Mitochondrial Aldehyde Dehydrogenase Length = 500

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K+  V     + T  G ++D+ Q  KIL +I +GK +GA+L+ GGG A D+G+++QPTVF
Sbjct: 327 KSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVF 386
Query: 75  ANVRDDMKIAREE 87
            +V+D M IA+EE
Sbjct: 387 GDVQDGMTIAKEE 399

>pdb|4FR8|A Chain A, Crystal Structure Of Human Aldehyde Dehydrogenase-2 In Complex With Nitroglycerin Length = 500

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K+  V     + T  G ++D+ Q  KIL +I +GK +GA+L+ GGG A D+G+++QPTVF
Sbjct: 327 KSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVF 386
Query: 75  ANVRDDMKIAREE 87
            +V+D M IA+EE
Sbjct: 387 GDVQDGMTIAKEE 399

>pdb|3N80|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase, Apo Form Length = 500

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K+  V     + T  G ++D+ Q  KIL +I +GK +GA+L+ GGG A D+G+++QPTVF
Sbjct: 327 KSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVF 386
Query: 75  ANVRDDMKIAREE 87
            +V+D M IA+EE
Sbjct: 387 GDVQDGMTIAKEE 399

>pdb|1NZW|A Chain A, Cys302ser Mutant Of Human Mitochondrial Aldehyde Dehydrogenase Complexed With Nadh And Mg2+ Length = 500

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K+  V     + T  G ++D+ Q  KIL +I +GK +GA+L+ GGG A D+G+++QPTVF
Sbjct: 327 KSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVF 386
Query: 75  ANVRDDMKIAREE 87
            +V+D M IA+EE
Sbjct: 387 GDVQDGMTIAKEE 399

>pdb|3N81|A Chain A, T244a Mutant Of Human Mitochondrial Aldehyde Dehydrogenase, Apo Form Length = 500

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K+  V     + T  G ++D+ Q  KIL +I +GK +GA+L+ GGG A D+G+++QPTVF
Sbjct: 327 KSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVF 386
Query: 75  ANVRDDMKIAREE 87
            +V+D M IA+EE
Sbjct: 387 GDVQDGMTIAKEE 399

>pdb|3INL|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant, Aldh22, Complexed With Agonist Alda-1 Length = 500

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K+  V     + T  G ++D+ Q  KIL +I +GK +GA+L+ GGG A D+G+++QPTVF
Sbjct: 327 KSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVF 386
Query: 75  ANVRDDMKIAREE 87
            +V+D M IA+EE
Sbjct: 387 GDVQDGMTIAKEE 399

>pdb|1ZUM|A Chain A, Human Mitochondrial Aldehyde Dehydrogenase Asian Variant, Aldh22, Apo Form Length = 500

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 50/73 (68%)
Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K+  V     + T  G ++D+ Q  KIL +I +GK +GA+L+ GGG A D+G+++QPTVF
Sbjct: 327 KSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVF 386
Query: 75  ANVRDDMKIAREE 87
            +V+D M IA+EE
Sbjct: 387 GDVQDGMTIAKEE 399

>pdb|1AG8|A Chain A, Aldehyde Dehydrogenase From Bovine Mitochondria Length = 499

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 50/73 (68%)
Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K+  V     + T  G ++D+ Q  K+L +I+SGK +G +L+ GGG A D+G+++QPTVF
Sbjct: 326 KSRVVGNPFDSRTEQGPQVDETQFKKVLGYIKSGKEEGLKLLCGGGAAADRGYFIQPTVF 385
Query: 75  ANVRDDMKIAREE 87
            +++D M IA+EE
Sbjct: 386 GDLQDGMTIAKEE 398

>pdb|3R31|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From Agrobacterium Tumefaciens Length = 517

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD---KGFYVQPTVFANVRD 79
           L   T  G  + K Q +K+L +IE GK++GA L+ GGG   +   +G YVQPTVFA+V D
Sbjct: 325 LDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTD 384
Query: 80  DMKIAREE 87
           DM IAREE
Sbjct: 385 DMTIAREE 392

>pdb|3I44|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase From Bartonella Henselae At 2.0a Resolution Length = 497

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 11  KDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG---GRAGDKGF 67
           KD+ +   V  G + G   G  + KEQ DKI + I+SG  +GA LV GG       ++G+
Sbjct: 324 KDIAEKTQVGPGHQTGNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGY 383
Query: 68  YVQPTVFANVRDDMKIAREE 87
           YV+PTVFA+V+  M+I REE
Sbjct: 384 YVRPTVFADVKPHMRIFREE 403

>pdb|2XDR|A Chain A, Crystallographic Structure Of Betaine Aldehyde Dehydrogenase Mutant E252a From Pseudomonas Aeruginosa Length = 489

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 27  TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD----KGFYVQPTVFANVRDDMK 82
           T +G  +    M+ +L +IESGK+Q A+L+ GG R  D    KG YV PTVF + RDDM 
Sbjct: 322 TNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMT 381
Query: 83  IAREE 87
           I REE
Sbjct: 382 IVREE 386

>pdb|2WOX|A Chain A, Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa With Nad(P)h-Catalytic Thiol Adduct. Length = 489

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 27  TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD----KGFYVQPTVFANVRDDMK 82
           T +G  +    M+ +L +IESGK+Q A+L+ GG R  D    KG YV PTVF + RDDM 
Sbjct: 322 TNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMT 381
Query: 83  IAREE 87
           I REE
Sbjct: 382 IVREE 386

>pdb|2WME|A Chain A, Crystallographic Structure Of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa Length = 490

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 27  TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD----KGFYVQPTVFANVRDDMK 82
           T +G  +    M+ +L +IESGK+Q A+L+ GG R  D    KG YV PTVF + RDDM 
Sbjct: 323 TNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMT 382
Query: 83  IAREE 87
           I REE
Sbjct: 383 IVREE 387

>pdb|2WME|C Chain C, Crystallographic Structure Of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa Length = 490

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 27  TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD----KGFYVQPTVFANVRDDMK 82
           T +G  +    M+ +L +IESGK+Q A+L+ GG R  D    KG YV PTVF + RDDM 
Sbjct: 323 TNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMT 382
Query: 83  IAREE 87
           I REE
Sbjct: 383 IVREE 387

>pdb|3ZQA|A Chain A, Crystallographic Structure Of Betaine Aldehyde Dehydrogenase Mutant C286a From Pseudomonas Aeruginosa In Complex With Nadph Length = 490

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 27  TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD----KGFYVQPTVFANVRDDMK 82
           T +G  +    M+ +L +IESGK+Q A+L+ GG R  D    KG YV PTVF + RDDM 
Sbjct: 323 TNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMT 382
Query: 83  IAREE 87
           I REE
Sbjct: 383 IVREE 387

>pdb|4A0M|A Chain A, Crystal Structure Of Betaine Aldehyde Dehydrogenase From Spinach In Complex With Nad Length = 496

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Query: 9   FTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKG 66
           +TK++  ++   +G R G +    I K Q DKI++FI + KS+GA ++ GG R     KG
Sbjct: 314 WTKNIKISDPFEEGCRLGPV----ISKGQYDKIMKFISTAKSEGATILYGGSRPEHLKKG 369
Query: 67  FYVQPTVFANVRDDMKIAREE 87
           +Y++PT+  ++   M+I +EE
Sbjct: 370 YYIEPTIVTDISTSMQIWKEE 390

>pdb|3B4W|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Aldehyde Dehydrogenase Complexed With Nad+ Length = 495

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDDMKIAREE 87
           G  I ++Q  ++  +I  G  +GA+LV GGGR    D GF++QPTVFA+V + M IA+EE
Sbjct: 328 GPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNKMTIAQEE 387

>pdb|3IWJ|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 2 From Pisum Sativum (Psamadh2) Length = 503

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Query: 9   FTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKG 66
           + K++  ++ + +G R G +    + + Q +KIL+F+ + KS+GA ++ GG R     KG
Sbjct: 317 WIKNIKISDPLEEGCRLGPV----VSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKG 372
Query: 67  FYVQPTVFANVRDDMKIAREE 87
           F+++PT+  +V  +M+I REE
Sbjct: 373 FFIEPTIITDVTTNMQIWREE 393

>pdb|3RHM|A Chain A, Crystal Structure Of The E673q Mutant Of C-Terminal Domain Of 10'formyltetrahydrofolate Dehydrogenase Length = 517

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L   T  G +  +  + K++E+ + G  +GA LV GG +    GF+ QPTVF +V D M 
Sbjct: 355 LERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMY 414
Query: 83  IAREE 87
           IA+EE
Sbjct: 415 IAKEE 419

>pdb|2O2P|A Chain A, Crystal Structure Of The C-Terminal Domain Of Rat 10'formyltetrahydrofolate Dehydrogenase Length = 517

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L   T  G +  +  + K++E+ + G  +GA LV GG +    GF+ QPTVF +V D M 
Sbjct: 355 LERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMY 414
Query: 83  IAREE 87
           IA+EE
Sbjct: 415 IAKEE 419

>pdb|4GNZ|A Chain A, Crystal Structure Of The C707s Mutant Of C-terminal Domain Of 10'formyltetrahydrofolate Dehydrogenase In Complex With Nadp Length = 517

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L   T  G +  +  + K++E+ + G  +GA LV GG +    GF+ QPTVF +V D M 
Sbjct: 355 LERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMY 414
Query: 83  IAREE 87
           IA+EE
Sbjct: 415 IAKEE 419

>pdb|3RHJ|A Chain A, Crystal Structure Of The E673a Mutant Of The C-Terminal Domain Of Rat 10'formyltetrahydrofolate Dehydrogenase In Complex With Co-Purified Nadp Length = 517

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L   T  G +  +  + K++E+ + G  +GA LV GG +    GF+ QPTVF +V D M 
Sbjct: 355 LERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMY 414
Query: 83  IAREE 87
           IA+EE
Sbjct: 415 IAKEE 419

>pdb|3RHL|A Chain A, Crystal Structure Of The E673aC707A DOUBLE MUTANT OF THE C-Terminal Domain Of Rat 10'formyltetrahydrofolate Dehydrogenase In Complex With Co-Purified Nadp Length = 517

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L   T  G +  +  + K++E+ + G  +GA LV GG +    GF+ QPTVF +V D M 
Sbjct: 355 LERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMY 414
Query: 83  IAREE 87
           IA+EE
Sbjct: 415 IAKEE 419

>pdb|3RHR|A Chain A, Crystal Structure Of The C707a Mutant Of The C-Terminal Domain Of 10'formyltetrahydrofolate Dehydrogenase In Complex With Nadph Length = 517

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
           L   T  G +  +  + K++E+ + G  +GA LV GG +    GF+ QPTVF +V D M 
Sbjct: 355 LERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMY 414
Query: 83  IAREE 87
           IA+EE
Sbjct: 415 IAKEE 419

>pdb|4I8P|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1a From Zea Mays (zmamadh1a) Length = 520

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 6/81 (7%)
Query: 9   FTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKG 66
           + K++  ++ + +G R G +    + + Q +KI +FI + KSQGA ++ GG R    +KG
Sbjct: 334 WAKNIKVSDPLEEGCRLGPV----VSEGQYEKIKKFISNAKSQGATILTGGVRPAHLEKG 389
Query: 67  FYVQPTVFANVRDDMKIAREE 87
           F+++PT+  ++   M+I REE
Sbjct: 390 FFIEPTIITDITTSMEIWREE 410

>pdb|4I8Q|A Chain A, Structure Of The Aminoaldehyde Dehydrogenase 1 E260a Mutant From Solanum Lycopersicum (slamadh1-e260a) Length = 514

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 9   FTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKG 66
           +TK++  ++ + +  + G +    +   Q +K+L+FI + KS+GA ++ GG R     KG
Sbjct: 331 WTKNIKISDPLEEDCKLGPV----VSAGQYEKVLKFISNAKSEGATILCGGERPQHLKKG 386
Query: 67  FYVQPTVFANVRDDMKIAREE 87
           +YVQPT+  +V   M+I +EE
Sbjct: 387 YYVQPTIITDVNTSMEIWKEE 407

>pdb|4I9B|A Chain A, Structure Of Aminoaldehyde Dehydrogenase 1 From Solanum Lycopersium (slamadh1) With A Thiohemiacetal Intermediate Length = 517

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 9   FTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKG 66
           +TK++  ++ + +  + G +    +   Q +K+L+FI + KS+GA ++ GG R     KG
Sbjct: 331 WTKNIKISDPLEEDCKLGPV----VSAGQYEKVLKFISNAKSEGATILCGGERPQHLKKG 386
Query: 67  FYVQPTVFANVRDDMKIAREE 87
           +YVQPT+  +V   M+I +EE
Sbjct: 387 YYVQPTIITDVNTSMEIWKEE 407

>pdb|2BJA|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus With Bound Nadh Length = 516

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           G  +  EQ  K+L +IE GK++G QLV GG R   +G+++ PTVF  V    +IA+EE
Sbjct: 361 GPVVSAEQERKVLSYIEIGKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEE 417

>pdb|1UZB|A Chain A, 1-pyrroline-5-carboxylate Dehydrogenase Length = 516

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           G  +  EQ  K+L +IE GK++G QLV GG R   +G+++ PTVF  V    +IA+EE
Sbjct: 361 GPVVSAEQERKVLSYIEIGKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEE 417

>pdb|2BHP|A Chain A, Crystal Analysis Of 1-Pyrroline-5-Carboxylate Dehydrogenase From Thermus With Bound Nad. Length = 516

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           G  +  EQ  K+L +IE GK++G QLV GG R   +G+++ PTVF  V    +IA+EE
Sbjct: 361 GPVVSAEQERKVLSYIEIGKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEE 417

>pdb|3IWK|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1 From Pisum Sativum (Psamadh1) Length = 503

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 6/81 (7%)
Query: 9   FTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKG 66
           + +++  ++ + +G R G I    + + Q  K+L  I S KS+GA ++ GG R     KG
Sbjct: 317 WAENIKISDPLEEGCRLGPI----VSEAQYKKVLNCISSAKSEGATILTGGRRPEHLKKG 372
Query: 67  FYVQPTVFANVRDDMKIAREE 87
           ++V+PT+  +V   M+I REE
Sbjct: 373 YFVEPTIITDVTTSMQIWREE 393

>pdb|3RJL|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Dehydrogenase From Bacillus Licheniformis (Target Nysgrc-000337) Length = 538

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 25  AGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIA 84
           A    G  ID+   +KI+++IE GK +G +LV+GG     KG++++PT+FA++    ++ 
Sbjct: 356 ADVYMGPVIDQASFNKIMDYIEIGKEEG-RLVSGGKGDDSKGYFIEPTIFADLDPKARLM 414
Query: 85  REE 87
           +EE
Sbjct: 415 QEE 417

>pdb|3U4J|A Chain A, Crystal Structure Of Nad-Dependent Aldehyde Dehydrogenase From Sinorhizobium Meliloti Length = 528

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDMKIAREE 87
           G  I +   +K+  ++ +G + GA+L+ GG R G + G Y  PTVFA V  D  IAREE
Sbjct: 344 GAXISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDXSIAREE 402

>pdb|1T90|A Chain A, Crystal Structure Of Methylmalonate Semialdehyde Dehydrogenase From Bacillus Subtilis Length = 486

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR-AGDKGFYVQPTVFANV 77
           +  GL  G   G  I ++   + L +IE G  +GA+LV  G     D G++V PT+F NV
Sbjct: 312 IGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNV 371
Query: 78  RDDMKIAREE 87
             +M I ++E
Sbjct: 372 TTEMTIWKDE 381

>pdb|3QAN|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate Dehydrogenase From Bacillus Halodurans Length = 538

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 8   VFTKDLDKTNYVTQGLRAG------TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR 61
           V+ + L+KT  + + L  G         G  ID++  +KI+ +IE GK +G +L+ GG  
Sbjct: 333 VYDEVLEKTVALAKNLTVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEG-RLMTGGEG 391
Query: 62  AGDKGFYVQPTVFANVRDDMKIAREE 87
               GF++QPT+ A++  +  I +EE
Sbjct: 392 DSSTGFFIQPTIIADLDPEAVIMQEE 417

>pdb|3TY7|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase Family Protein From Staphylococcus Aureus Length = 478

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 26  GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG---GRAGDKGFYVQPTVFANVRDDMK 82
           GT  G  I K+Q D++  +I  G  +GA+L  GG       +KG++ +PT+F NV +   
Sbjct: 318 GTQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQXT 377
Query: 83  IAREE 87
           IA+EE
Sbjct: 378 IAQEE 382

>pdb|1A4S|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver Length = 503

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 27  TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG------DKGFYVQPTVFANVRDD 80
           T  G  I K Q+DK+L F+   K +GA+++ GG            G+++ P V  N RDD
Sbjct: 334 TRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDD 393
Query: 81  MKIAREE 87
           M   +EE
Sbjct: 394 MTCVKEE 400

>pdb|2D4E|A Chain A, Crystal Structure Of The Hpcc From Thermus Thermophilus Hb8 Length = 515

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 9/66 (13%)
Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--------DKGFYVQPTVFANVRDDM 81
           G  I  E + ++L ++E+GK +GA+L+ GG RA          +G Y+ PTVF    + M
Sbjct: 345 GPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVFVG-ENHM 403
Query: 82  KIAREE 87
           KIA+EE
Sbjct: 404 KIAQEE 409

>pdb|3EK1|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase From Brucella Melitensis Biovar Abortus 2308 Length = 504

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVR 78
           V  G   G + G  I+++ + K+   IE   S+GA+L+ GG   G  G + +P +   V 
Sbjct: 340 VGNGTEPGVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELG--GLFFEPGILTGVT 397
Query: 79  DDMKIAREE 87
            DM +A+EE
Sbjct: 398 SDMLVAKEE 406

>pdb|2W8N|A Chain A, The Crytal Structure Of The Oxidized Form Of Human Ssadh Length = 487

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 1   MHWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG 60
           +H      F + + K   V  G   GT  G  I+++ ++K+ + +    S+GA +V GG 
Sbjct: 304 IHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGK 363
Query: 61  RAGDKGFYVQPTVFANVRDDMKIAREE 87
           R      + +PT+  NV  DM    EE
Sbjct: 364 RHQLGKNFFEPTLLCNVTQDMLCTHEE 390

>pdb|2W8P|A Chain A, The Crystal Structure Of Human C340a Ssadh Length = 487

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 1   MHWTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG 60
           +H      F + + K   V  G   GT  G  I+++ ++K+ + +    S+GA +V GG 
Sbjct: 304 IHDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGK 363
Query: 61  RAGDKGFYVQPTVFANVRDDMKIAREE 87
           R      + +PT+  NV  DM    EE
Sbjct: 364 RHQLGKNFFEPTLLCNVTQDMLCTHEE 390

>pdb|4DAL|A Chain A, Crystal Structure Of Putative Aldehyde Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 498

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 30  GRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDMKIAREE 87
           G  I + Q D++  F+E    Q    +  GGR G D+GF+ QPTV A    + +I R E
Sbjct: 343 GPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQEDEIVRRE 401

>pdb|3JZ4|A Chain A, Crystal Structure Of E. Coli Nadp Dependent Enzyme Length = 481

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 18  YVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANV 77
           ++  GL  G   G  ID++ + K+ E I     +GA++V GG      G + QPT+  +V
Sbjct: 316 HIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDV 375
Query: 78  RDDMKIAREE 87
             + K+++EE
Sbjct: 376 PANAKVSKEE 385

>pdb|3JZ4|C Chain C, Crystal Structure Of E. Coli Nadp Dependent Enzyme Length = 481

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 18  YVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANV 77
           ++  GL  G   G  ID++ + K+ E I     +GA++V GG      G + QPT+  +V
Sbjct: 316 HIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDV 375
Query: 78  RDDMKIAREE 87
             + K+++EE
Sbjct: 376 PANAKVSKEE 385

>pdb|3IFG|A Chain A, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase From Burkholderia Pseudomallei, Part 1 Of 2 Length = 484

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR-AGDKGFYVQPTVFANV 77
           V +G  +G   G  I++  + K+   I    ++GA L+ GG R A   GF+ +PTV   V
Sbjct: 320 VGRGTESGATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFF-EPTVLTGV 378
Query: 78  RDDMKIAREE 87
           + DM +A+EE
Sbjct: 379 KPDMDVAKEE 388

>pdb|3ED6|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Betaine Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus Length = 520

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 21  QGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFAN 76
            G  A T  G  I  E  +KI  +++  K++GA +  GG R        G + +PTV  N
Sbjct: 344 NGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITN 403
Query: 77  VRDDMKIAREE 87
               M+I +EE
Sbjct: 404 CDTSMRIVQEE 414

>pdb|3R64|A Chain A, Crystal Structure Of A Nad-Dependent Benzaldehyde Dehydrogenase From Corynebacterium Glutamicum Length = 508

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 26  GTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAR 85
           GT+ G  I+  Q+  + E IE  K +GA +   G     +G  V P VF++V  DM+IAR
Sbjct: 330 GTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPI---EGRLVHPHVFSDVTSDMEIAR 386
Query: 86  EE 87
           EE
Sbjct: 387 EE 388

>pdb|2JG7|A Chain A, Crystal Structure Of Seabream Antiquitin And Elucidation Of Its Substrate Specificity Length = 510

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 27  TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIARE 86
           T++G    K+ +D+ L  IE  K QG  LV GG      G YV+PT+   +  D  I   
Sbjct: 338 TLYGPLHTKQAVDQYLAAIEQAKQQGGTLVCGGKVMDRPGNYVEPTIITGLAHDAPIVHT 397
Query: 87  E 87
           E
Sbjct: 398 E 398

>pdb|3K2W|A Chain A, Crystal Structure Of Betaine-Aldehyde Dehydrogenase From Pseudoalteromonas Atlantica T6c Length = 497

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 3   WTSAAVFTKDLDKTNYVTQGLRAG------TIWGRKIDKEQMDKILEFIESGKSQGAQLV 56
           +  A+V+ + + K   + +GL+ G      +  G K ++ ++D I   +     QGA + 
Sbjct: 298 YVHASVYDEFMAKFLPLVKGLKVGDPMDADSQMGPKCNQREIDNIDHIVHEAIKQGATVA 357
Query: 57  AGGGRAGDKGF----YVQPTVFANVRDDMKIAREE 87
            GG  A  +GF    + +PTV  +V+ D  +  EE
Sbjct: 358 TGGKTATVEGFEGGCWYEPTVLVDVKQDNIVVHEE 392

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	87
1o04_A	500	Aldehyde dehydrogenase, mitochondrial precursor; A	1e-29
1o04_A	500	Aldehyde dehydrogenase, mitochondrial precursor; A	1e-06
2o2p_A	517	Formyltetrahydrofolate dehydrogenase; aldehyde deh	1e-29
2o2p_A	517	Formyltetrahydrofolate dehydrogenase; aldehyde deh	2e-06
1bxs_A	501	Aldehyde dehydrogenase; retinal, class 1, tetramer	2e-29
1bxs_A	501	Aldehyde dehydrogenase; retinal, class 1, tetramer	1e-06
3u4j_A	528	NAD-dependent aldehyde dehydrogenase; PSI-biology,	1e-27
3u4j_A	528	NAD-dependent aldehyde dehydrogenase; PSI-biology,	5e-06
2ve5_A	490	BADH, betaine aldehyde dehydrogenase; aldehyde oxi	1e-27
2ve5_A	490	BADH, betaine aldehyde dehydrogenase; aldehyde oxi	3e-06
3r31_A	517	BADH, betaine aldehyde dehydrogenase; structural g	3e-27
3r31_A	517	BADH, betaine aldehyde dehydrogenase; structural g	3e-06
3iwj_A	503	Putative aminoaldehyde dehydrogenase; rossmann fol	3e-27
3iwj_A	503	Putative aminoaldehyde dehydrogenase; rossmann fol	1e-06
1a4s_A	503	ALDH, betaine aldehyde dehydrogenase; oxidoreducta	5e-27
1a4s_A	503	ALDH, betaine aldehyde dehydrogenase; oxidoreducta	3e-06
3ed6_A	520	Betaine aldehyde dehydrogenase; structural genomic	1e-26
3ed6_A	520	Betaine aldehyde dehydrogenase; structural genomic	2e-06
1wnd_A	495	Putative betaine aldehyde dehydrogenase; NADH, flu	2e-26
1wnd_A	495	Putative betaine aldehyde dehydrogenase; NADH, flu	2e-05
4f3x_A	498	Putative aldehyde dehydrogenase; structural genomi	5e-26
4f3x_A	498	Putative aldehyde dehydrogenase; structural genomi	1e-05
3b4w_A	495	Aldehyde dehydrogenase; RV0223C-NAD complex, struc	7e-26
3b4w_A	495	Aldehyde dehydrogenase; RV0223C-NAD complex, struc	2e-04
3ty7_A	478	Putative aldehyde dehydrogenase SAV2122; structura	1e-24
3ty7_A	478	Putative aldehyde dehydrogenase SAV2122; structura	2e-04
3i44_A	497	Aldehyde dehydrogenase; oxidoreductase, structural	1e-24
3i44_A	497	Aldehyde dehydrogenase; oxidoreductase, structural	2e-04
3qan_A	538	1-pyrroline-5-carboxylate dehydrogenase 1; proline	4e-24
3qan_A	538	1-pyrroline-5-carboxylate dehydrogenase 1; proline	1e-04
2d4e_A	515	5-carboxymethyl-2-hydroxymuconate semialdehyde deh	1e-23
2d4e_A	515	5-carboxymethyl-2-hydroxymuconate semialdehyde deh	8e-06
1uzb_A	516	1-pyrroline-5-carboxylate dehydrogenase; oxidoredu	4e-23
1uzb_A	516	1-pyrroline-5-carboxylate dehydrogenase; oxidoredu	8e-04
3r64_A	508	NAD dependent benzaldehyde dehydrogenase; structur	5e-21
2j6l_A	500	Aldehyde dehydrogenase family 7 member A1; NAD, re	1e-18
3ju8_A	490	Succinylglutamic semialdehyde dehydrogenase; alpha	1e-17
3prl_A	505	NADP-dependent glyceraldehyde-3-phosphate dehydro;	3e-17
2y53_A	534	Aldehyde dehydrogenase (BOX pathway); oxidoreducta	6e-17
1uxt_A	501	Glyceraldehyde-3-phosphate dehydrogenase (NADP+);	1e-16
2imp_A	479	Lactaldehyde dehydrogenase; protein-lactate-NADH t	3e-16
4f9i_A	1026	Proline dehydrogenase/delta-1-pyrroline-5-carboxy	5e-16
3pqa_A	486	Lactaldehyde dehydrogenase; structural genomics, p	1e-15
4dng_A	485	Uncharacterized aldehyde dehydrogenase ALDY; struc	1e-15
1euh_A	475	NADP dependent non phosphorylating glyceraldehyde-	2e-15
2w8n_A	487	Succinate-semialdehyde dehydrogenase, mitochondria	2e-14
3ifg_A	484	Succinate-semialdehyde dehydrogenase (NADP+); niai	2e-14
3jz4_A	481	Succinate-semialdehyde dehydrogenase [NADP+]; tetr	3e-14
3ek1_A	504	Aldehyde dehydrogenase; ssgcid, oxidoreductase, st	6e-14
3k2w_A	497	Betaine-aldehyde dehydrogenase; structural genomic	8e-14
3rh9_A	506	Succinate-semialdehyde dehydrogenase (NAD(P)(+));	9e-14
1t90_A	486	MMSDH, probable methylmalonate-semialdehyde dehydr	1e-13
3etf_A	462	Putative succinate-semialdehyde dehydrogenase; cen	6e-13
3ros_A	484	NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-	7e-13
4e4g_A	521	Methylmalonate-semialdehyde dehydrogenase; structu	4e-12
4e3x_A	563	Delta-1-pyrroline-5-carboxylate dehydrogenase, mit	6e-11
3haz_A	1001	Proline dehydrogenase; proline utilization A, PUTA	5e-09
1ez0_A	510	ALDH, aldehyde dehydrogenase; nucleotide binding d	9e-07
3my7_A	452	Alcohol dehydrogenase/acetaldehyde dehydrogenase;	2e-06
3sza_A	469	Aldehyde dehydrogenase, dimeric NADP-preferring; A	4e-06

>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ... Length = 500

 Score =  108 bits (272), Expect = 1e-29
 Identities = 31/66 (46%), Positives = 47/66 (71%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
              + T  G ++D+ Q  KIL +I +GK +GA+L+ GGG A D+G+++QPTVF +V+D M
Sbjct: 334 PFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGM 393

Query: 82  KIAREE 87
            IA+EE
Sbjct: 394 TIAKEE 399

>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ... Length = 500

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 18/24 (75%), Positives = 22/24 (91%)

Query: 6   AAVFTKDLDKTNYVTQGLRAGTIW 29
           AAVFTKDLDK NY++Q L+AGT+W
Sbjct: 429 AAVFTKDLDKANYLSQALQAGTVW 452

>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A* Length = 517

 Score =  108 bits (271), Expect = 1e-29
 Identities = 26/66 (39%), Positives = 38/66 (57%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
            L   T  G +  +  + K++E+ + G  +GA LV GG +    GF+ QPTVF +V D M
Sbjct: 354 PLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHM 413

Query: 82  KIAREE 87
            IA+EE
Sbjct: 414 YIAKEE 419

>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A* Length = 517

 Score = 42.9 bits (102), Expect = 2e-06
 Identities = 11/25 (44%), Positives = 20/25 (80%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           ++ VFT+D++K  YV+  L+AGT++
Sbjct: 450 ASGVFTRDINKALYVSDKLQAGTVF 474

>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A* Length = 501

 Score =  108 bits (271), Expect = 2e-29
 Identities = 38/66 (57%), Positives = 51/66 (77%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
            L  G   G +IDKEQ +KIL+ IESGK +GA+L  GGG  G+KG+++QPTVF++V DDM
Sbjct: 335 PLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDM 394

Query: 82  KIAREE 87
           +IA+EE
Sbjct: 395 RIAKEE 400

>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A* Length = 501

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 6   AAVFTKDLDKTNYVTQGLRAGTIW 29
           A +FT D+DK   V+  L++GT+W
Sbjct: 430 AGIFTNDIDKAITVSSALQSGTVW 453

>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti} Length = 528

 Score =  102 bits (257), Expect = 1e-27
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDD 80
            L   T  G  I +   +K+  ++ +G + GA+L+ GG R G + G Y  PTVFA V  D
Sbjct: 336 PLNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPD 395

Query: 81  MKIAREE 87
           M IAREE
Sbjct: 396 MSIAREE 402

>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti} Length = 528

 Score = 41.8 bits (99), Expect = 5e-06
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           SA+V++ +L+      + +RAG  W
Sbjct: 431 SASVWSTNLETALQTIRRIRAGRCW 455

>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens} Length = 517

 Score =  101 bits (255), Expect = 3e-27
 Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG---RAGDKGFYVQPTVFANVR 78
            L   T  G  + K Q +K+L +IE GK++GA L+ GGG       +G YVQPTVFA+V 
Sbjct: 324 PLDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVT 383

Query: 79  DDMKIAREE 87
           DDM IAREE
Sbjct: 384 DDMTIAREE 392

>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens} Length = 517

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 6   AAVFTKDLDKTNYVTQGLRAGTIW 29
             VFT DL + + V  GL AGT+W
Sbjct: 422 GGVFTADLARAHRVVDGLEAGTLW 445

>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A* Length = 503

 Score =  101 bits (254), Expect = 3e-27
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRD 79
            L  G   G  + + Q +KIL+F+ + KS+GA ++ GG R     KGF+++PT+  +V  
Sbjct: 326 PLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTT 385

Query: 80  DMKIAREE 87
           +M+I REE
Sbjct: 386 NMQIWREE 393

>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A* Length = 503

 Score = 43.3 bits (103), Expect = 1e-06
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 6   AAVFTKDLDKTNYVTQGLRAGTIW 29
           AAV + DL++   VT+  +AG +W
Sbjct: 423 AAVISNDLERCERVTKAFKAGIVW 446

>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A* Length = 503

 Score =  101 bits (253), Expect = 5e-27
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG------DKGFYVQPTVFA 75
            L   T  G  I K Q+DK+L F+   K +GA+++ GG            G+++ P V  
Sbjct: 329 PLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLD 388

Query: 76  NVRDDMKIAREE 87
           N RDDM   +EE
Sbjct: 389 NCRDDMTCVKEE 400

>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A* Length = 503

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 6   AAVFTKDLDKTNYVTQGLRAGTIW 29
           + VFT+D+ + + V   L AGT +
Sbjct: 430 SGVFTRDISRAHRVAANLEAGTCY 453

>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A* Length = 520

 Score =  100 bits (251), Expect = 1e-26
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANV 77
           G  A T  G  I  E  +KI  +++  K++GA +  GG R        G + +PTV  N 
Sbjct: 345 GFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNC 404

Query: 78  RDDMKIAREE 87
              M+I +EE
Sbjct: 405 DTSMRIVQEE 414

>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A* Length = 520

 Score = 42.9 bits (102), Expect = 2e-06
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 6   AAVFTKDLDKTNYVTQGLRAGTIW 29
            AVF+KD+ K   V   L+ GT+W
Sbjct: 444 GAVFSKDIGKAQRVANKLKLGTVW 467

>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A Length = 495

 Score = 99.5 bits (249), Expect = 2e-26
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDD 80
                T  G       ++++ + +E  K+ G  +++ GG +    G+Y  PT+ A    D
Sbjct: 333 PDDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQD 392

Query: 81  MKIAREE 87
             I ++E
Sbjct: 393 DAIVQKE 399

>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A Length = 495

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 6   AAVFTKDLDKTNYVTQGLRAGTIW 29
           ++V+TKD+ + + V+  L+ G  W
Sbjct: 429 SSVWTKDVGRAHRVSARLQYGCTW 452

>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A* Length = 498

 Score = 98.0 bits (245), Expect = 5e-26
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDD 80
                   G  I + Q D++  F+E    Q   ++  GG    D+GF+ QPTV A    +
Sbjct: 335 DDDTENEIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQE 394

Query: 81  MKIAREE 87
            +I R E
Sbjct: 395 DEIVRRE 401

>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A* Length = 498

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 6   AAVFTKDLDKTNYVTQGLRAGTIW 29
           ++V+TKD+ K       L+ G  W
Sbjct: 431 SSVWTKDISKAMRAASRLQYGCTW 454

>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis} Length = 495

 Score = 98.0 bits (245), Expect = 7e-26
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRD 79
                   G  I ++Q  ++  +I  G  +GA+LV GGGR    D GF++QPTVFA+V +
Sbjct: 320 PSDPAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDN 379

Query: 80  DMKIAREE 87
            M IA+EE
Sbjct: 380 KMTIAQEE 387

>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis} Length = 495

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           + +V+T D+ K   ++Q +R GT  
Sbjct: 416 AGSVWTTDVPKGIKISQQIRTGTYG 440

>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus} Length = 478

 Score = 94.1 bits (235), Expect = 1e-24
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRDDMKIAREE 87
           I K+Q D++  +I  G  +GA+L  GG       +KG++ +PT+F NV + M IA+EE
Sbjct: 325 ISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDNQMTIAQEE 382

>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus} Length = 478

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           +  V  KD +  + V + + AGT+ 
Sbjct: 411 AGYVIGKDKETLHKVARSIEAGTVE 435

>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae} Length = 497

 Score = 94.2 bits (235), Expect = 1e-24
 Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 3/58 (5%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRDDMKIAREE 87
           + KEQ DKI + I+SG  +GA LV GG       ++G+YV+PTVFA+V+  M+I REE
Sbjct: 346 VSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKPHMRIFREE 403

>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae} Length = 497

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 4/25 (16%), Positives = 12/25 (48%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           +  + ++D  K   +   +R+G + 
Sbjct: 432 TNYIQSQDRSKCRRIAAQVRSGMVE 456

>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A Length = 538

 Score = 93.1 bits (232), Expect = 4e-24
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           ID++  +KI+ +IE GK +G +L+ GG      GF++QPT+ A++  +  I +EE
Sbjct: 364 IDEKAFEKIMSYIEIGKKEG-RLMTGGEGDSSTGFFIQPTIIADLDPEAVIMQEE 417

>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A Length = 538

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 4/25 (16%), Positives = 10/25 (40%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           + AV T++        +    G ++
Sbjct: 446 TGAVITRNRAHIEQAKREFHVGNLY 470

>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus} Length = 515

 Score = 91.5 bits (228), Expect = 1e-23
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 9/74 (12%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--------DKGFYVQPTV 73
            L   T  G  I  E + ++L ++E+GK +GA+L+ GG RA          +G Y+ PTV
Sbjct: 337 PLDPETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTV 396

Query: 74  FANVRDDMKIAREE 87
           F    + MKIA+EE
Sbjct: 397 FVG-ENHMKIAQEE 409

>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus} Length = 515

 Score = 41.0 bits (97), Expect = 8e-06
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 6   AAVFTKDLDKTNYVTQGLRAGTIW 29
           A VFT+DL++ + +   L AG ++
Sbjct: 439 AYVFTRDLERAHRLALELEAGMVY 462

>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A* Length = 516

 Score = 90.3 bits (225), Expect = 4e-23
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           +  EQ  K+L +IE GK++G  LV GG R   +G+++ PTVF  V    +IA+EE
Sbjct: 364 VSAEQERKVLSYIEIGKNEGQ-LVLGGKRLEGEGYFIAPTVFTEVPPKARIAQEE 417

>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A* Length = 516

 Score = 35.2 bits (82), Expect = 8e-04
 Identities = 2/25 (8%), Positives = 11/25 (44%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           +  V+++  +   +  +    G ++
Sbjct: 446 TGGVYSRKREHLEWARREFHVGNLY 470

>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum} Length = 508

 Score = 84.2 bits (209), Expect = 5e-21
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
               GT+ G  I+  Q+  + E IE  K +GA +   G     +G  V P VF++V  DM
Sbjct: 326 PSAEGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPI---EGRLVHPHVFSDVTSDM 382

Query: 82  KIAREE 87
           +IAREE
Sbjct: 383 EIAREE 388

>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A* Length = 500

 Score = 77.2 bits (191), Expect = 1e-18
 Identities = 18/66 (27%), Positives = 28/66 (42%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
                 ++G    K+ +   L  +E  K +G  +V GG      G YV+PT+   +  D 
Sbjct: 335 PWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDA 394

Query: 82  KIAREE 87
            IA  E
Sbjct: 395 SIAHTE 400

>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa} Length = 490

 Score = 74.5 bits (184), Expect = 1e-17
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           I     + +L+  E    +GAQ +    +  D    + P +  +V    +   EE
Sbjct: 327 ISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGIL-DVSAVAERPDEE 380

>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A* Length = 505

 Score = 73.4 bits (181), Expect = 3e-17
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           ID++    I   I+     GA L++G  R   +G  + PT+  +V   M++A EE
Sbjct: 335 IDEKSAAFIQGLIDDALENGATLLSGNKR---QGNLLSPTLLDDVTPAMRVAWEE 386

>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A* Length = 534

 Score = 72.7 bits (179), Expect = 6e-17
 Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 7/62 (11%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRA-----GDKGFYVQPTVF--ANVRDDMKIAR 85
           + +EQ + +L  I + + +                 +    V P +F   +  +   +  
Sbjct: 342 VSREQYENVLAGIAALREEAVLAYDSSAVPLIDADANIAACVAPHLFVVNDPDNATLLHD 401

Query: 86  EE 87
            E
Sbjct: 402 VE 403

>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A* Length = 501

 Score = 71.8 bits (177), Expect = 1e-16
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF---ANVR 78
                   G  I    +D+++  IE    +G +++AGG R G    YVQPT     A+  
Sbjct: 329 PRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRLG--PTYVQPTFVEAPADRV 386

Query: 79  DDMKIAREE 87
            DM + + E
Sbjct: 387 KDMVLYKRE 395

>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A* Length = 479

 Score = 70.6 bits (174), Expect = 3e-16
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           I+   ++++ + +     +GA++  GG     KG+Y  PT+  +VR +M I  EE
Sbjct: 329 INAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEE 383

>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens} Length = 1026

 Score = 70.1 bits (172), Expect = 5e-16
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
            D + M  I E+ E GK +G  ++        +G++V  T+   ++ + +IA+EE
Sbjct: 858 ADDKAMKSIKEYAEIGKREGH-VLYESPVPAGEGYFVPMTIIGGIKPEHRIAQEE 911

>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A* Length = 486

 Score = 69.1 bits (170), Expect = 1e-15
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
            L   T  G  I  E  + + + +E    +G +L+ GG R         PT+   V  D 
Sbjct: 307 PLDEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKR---DKALFYPTIL-EVDRDN 362

Query: 82  KIAREE 87
            + + E
Sbjct: 363 ILCKTE 368

>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis} Length = 485

 Score = 68.8 bits (169), Expect = 1e-15
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
                T+ G  I++ Q++K LE IE  K+ G +L   G R    G  + P VF    ++ 
Sbjct: 319 QTDPKTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKR---VGNVLTPYVFVGADNNS 375

Query: 82  KIAREE 87
           KIA+ E
Sbjct: 376 KIAQTE 381

>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A* Length = 475

 Score = 67.9 bits (167), Expect = 2e-15
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           ID +  D +   I     +GA  +    R   +G  + P +F  V  DM++A EE
Sbjct: 326 IDTKSADYVEGLINDANDKGATALTEIKR---EGNLICPILFDKVTTDMRLAWEE 377

>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A* Length = 487

 Score = 65.6 bits (161), Expect = 2e-14
 Identities = 24/82 (29%), Positives = 39/82 (47%)

Query: 6   AAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDK 65
              F + + K   V  G   GT  G  I+++ ++K+ + +    S+GA +V GG R    
Sbjct: 309 VKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLG 368

Query: 66  GFYVQPTVFANVRDDMKIAREE 87
             + +PT+  NV  DM    EE
Sbjct: 369 KNFFEPTLLCNVTQDMLCTHEE 390

>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q Length = 484

 Score = 65.2 bits (160), Expect = 2e-14
 Identities = 21/66 (31%), Positives = 34/66 (51%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
           G  +G   G  I++  + K+   I    ++GA L+ GG R      + +PTV   V+ DM
Sbjct: 323 GTESGATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDM 382

Query: 82  KIAREE 87
            +A+EE
Sbjct: 383 DVAKEE 388

>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli} Length = 481

 Score = 65.2 bits (160), Expect = 3e-14
 Identities = 22/66 (33%), Positives = 36/66 (54%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
           GL  G   G  ID++ + K+ E I     +GA++V GG      G + QPT+  +V  + 
Sbjct: 320 GLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANA 379

Query: 82  KIAREE 87
           K+++EE
Sbjct: 380 KVSKEE 385

>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308} Length = 504

 Score = 64.1 bits (157), Expect = 6e-14
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
           G   G + G  I+++ + K+   IE   S+GA+L+ GG   G  G + +P +   V  DM
Sbjct: 343 GTEPGVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELG--GLFFEPGILTGVTSDM 400

Query: 82  KIAREE 87
            +A+EE
Sbjct: 401 LVAKEE 406

>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C} Length = 497

 Score = 63.7 bits (156), Expect = 8e-14
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR----AGDKGFYVQPTVFANV 77
            + A +  G K ++ ++D I   +     QGA +  GG        + G + +PTV  +V
Sbjct: 323 PMDADSQMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDV 382

Query: 78  RDDMKIAREE 87
           + D  +  EE
Sbjct: 383 KQDNIVVHEE 392

>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei} Length = 506

 Score = 63.7 bits (156), Expect = 9e-14
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD-KGFYVQPTVFANVRDD 80
           G+  G   G  I+K+  DK+   ++    +GA LVAG   A    G +  PTV   V  +
Sbjct: 322 GMNDGIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDRE 381

Query: 81  MKIAREE 87
           M   +EE
Sbjct: 382 MCCYQEE 388

>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis} Length = 486

 Score = 63.4 bits (155), Expect = 1e-13
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG-GRAGDKGFYVQPTVFANV 77
           +  GL  G   G  I ++   + L +IE G  +GA+LV  G     D G++V PT+F NV
Sbjct: 312 IGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNV 371

Query: 78  RDDMKIAREE 87
             +M I ++E
Sbjct: 372 TTEMTIWKDE 381

>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A Length = 462

 Score = 61.4 bits (150), Expect = 6e-13
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
            L      G     +  D++ + +++  ++GA+L+ GG +   +G Y   TV A+V  DM
Sbjct: 300 PLVEENDLGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDM 359

Query: 82  KIAREE 87
              R+E
Sbjct: 360 TAFRQE 365

>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus} Length = 484

 Score = 61.0 bits (149), Expect = 7e-13
 Identities = 12/66 (18%), Positives = 27/66 (40%)

Query: 22  GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM 81
            L A T       ++  +K+   ++     GA++         KG + +PT+  ++  D 
Sbjct: 297 PLEADTTLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDN 356

Query: 82  KIAREE 87
            +  +E
Sbjct: 357 PVFDKE 362

>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti} Length = 521

 Score = 58.8 bits (143), Expect = 4e-12
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 19  VTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGG----GRAGDKGFYVQPTVF 74
           +          G  + KE   +I   I+SG  QGA+LV  G     +  + G ++   +F
Sbjct: 334 IGPYTDEKADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLF 393

Query: 75  ANVRDDMKIAREE 87
            +V  DM I + E
Sbjct: 394 DDVTPDMDIYKTE 406

>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A Length = 563

 Score = 55.7 bits (135), Expect = 6e-11
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 33  IDKEQMDKILEFIESGKSQG-AQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           ID +   +I +++E  +S     ++AGG      G+YV+P +  +      I +EE
Sbjct: 392 IDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQEPIMKEE 447

>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110} Length = 1001

 Score = 50.1 bits (120), Expect = 5e-09
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           ID E   ++   I   K++  +L   G     +G +V P +F     +     EE
Sbjct: 837 IDVEAKQRLDAHIARMKTEA-RLHFAG--PAPEGCFVAPHIFELT--EAGQLTEE 886

>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A* Length = 510

 Score = 43.8 bits (104), Expect = 9e-07
 Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 10/70 (14%)

Query: 21  QGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF---ANV 77
           +     T+    I      ++   +  G   G  +             V   +F   +  
Sbjct: 315 RQQSPSTLLTPGIRDSYQSQV---VSRGSDDGIDVTFSQAE----SPCVASALFVTSSEN 367

Query: 78  RDDMKIAREE 87
                   EE
Sbjct: 368 WRKHPAWEEE 377

>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus} Length = 452

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 5/55 (9%)

Query: 33  IDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           ID     KI+    +  ++ A     G +       +       V  D   A E+
Sbjct: 288 IDGALNAKIVGQPATAIAEMA-----GVKVPADTKVLIGEGLGKVSYDDAFAHEK 337

>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A* 1ad3_A* Length = 469

 Score = 41.8 bits (99), Expect = 4e-06
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 29  WGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           +GR I      +++  IE  K      VA GG       Y+ PT+  +V     + +EE
Sbjct: 298 YGRIISARHFQRVMGLIEGQK------VAYGGTGDAATRYIAPTILTDVDPQSPVMQEE 350

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
2wme_A	490	BADH, betaine aldehyde dehydrogenase; aldehyde oxi	99.81
3ifg_A	484	Succinate-semialdehyde dehydrogenase (NADP+); niai	99.81
2o2p_A	517	Formyltetrahydrofolate dehydrogenase; aldehyde deh	99.81
4e3x_A	563	Delta-1-pyrroline-5-carboxylate dehydrogenase, mit	99.81
3ros_A	484	NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-	99.8
3rh9_A	506	Succinate-semialdehyde dehydrogenase (NAD(P)(+));	99.79
3iwj_A	503	Putative aminoaldehyde dehydrogenase; rossmann fol	99.79
1o04_A	500	Aldehyde dehydrogenase, mitochondrial precursor; A	99.79
4f3x_A	498	Putative aldehyde dehydrogenase; structural genomi	99.79
3ed6_A	520	Betaine aldehyde dehydrogenase; structural genomic	99.79
1bxs_A	501	Aldehyde dehydrogenase; retinal, class 1, tetramer	99.79
3jz4_A	481	Succinate-semialdehyde dehydrogenase [NADP+]; tetr	99.79
2j6l_A	500	Aldehyde dehydrogenase family 7 member A1; NAD, re	99.79
3b4w_A	495	Aldehyde dehydrogenase; RV0223C-NAD complex, struc	99.78
3u4j_A	528	NAD-dependent aldehyde dehydrogenase; PSI-biology,	99.78
3i44_A	497	Aldehyde dehydrogenase; oxidoreductase, structural	99.78
3ek1_A	504	Aldehyde dehydrogenase; ssgcid, oxidoreductase, st	99.78
2imp_A	479	Lactaldehyde dehydrogenase; protein-lactate-NADH t	99.78
4e4g_A	521	Methylmalonate-semialdehyde dehydrogenase; structu	99.77
1wnd_A	495	Putative betaine aldehyde dehydrogenase; NADH, flu	99.77
3etf_A	462	Putative succinate-semialdehyde dehydrogenase; cen	99.77
3qan_A	538	1-pyrroline-5-carboxylate dehydrogenase 1; proline	99.77
1a4s_A	503	ALDH, betaine aldehyde dehydrogenase; oxidoreducta	99.77
3k2w_A	497	Betaine-aldehyde dehydrogenase; structural genomic	99.76
3r31_A	517	BADH, betaine aldehyde dehydrogenase; structural g	99.76
2ve5_A	490	BADH, betaine aldehyde dehydrogenase; aldehyde oxi	99.76
3pqa_A	486	Lactaldehyde dehydrogenase; structural genomics, p	99.76
2d4e_A	515	5-carboxymethyl-2-hydroxymuconate semialdehyde deh	99.76
3prl_A	505	NADP-dependent glyceraldehyde-3-phosphate dehydro;	99.75
2w8n_A	487	Succinate-semialdehyde dehydrogenase, mitochondria	99.75
3r64_A	508	NAD dependent benzaldehyde dehydrogenase; structur	99.75
1uxt_A	501	Glyceraldehyde-3-phosphate dehydrogenase (NADP+);	99.75
1t90_A	486	MMSDH, probable methylmalonate-semialdehyde dehydr	99.74
4dng_A	485	Uncharacterized aldehyde dehydrogenase ALDY; struc	99.74
1uzb_A	516	1-pyrroline-5-carboxylate dehydrogenase; oxidoredu	99.74
3ty7_A	478	Putative aldehyde dehydrogenase SAV2122; structura	99.74
3ju8_A	490	Succinylglutamic semialdehyde dehydrogenase; alpha	99.73
1euh_A	475	NADP dependent non phosphorylating glyceraldehyde-	99.73
4h7n_A	474	Aldehyde dehydrogenase; structural genomics, PSI-b	99.73
2y53_A	534	Aldehyde dehydrogenase (BOX pathway); oxidoreducta	99.73
4f9i_A	1026	Proline dehydrogenase/delta-1-pyrroline-5-carboxy	99.7
3sza_A	469	Aldehyde dehydrogenase, dimeric NADP-preferring; A	99.67
3haz_A	1001	Proline dehydrogenase; proline utilization A, PUTA	99.5
3lns_A	457	Benzaldehyde dehydrogenase; oxidoreductase, NADP+,	99.49
3v4c_A	528	Aldehyde dehydrogenase (NADP+); structural genomic	99.03
1ez0_A	510	ALDH, aldehyde dehydrogenase; nucleotide binding d	99.0
3k9d_A	464	LMO1179 protein, aldehyde dehydrogenase; structura	98.27
3my7_A	452	Alcohol dehydrogenase/acetaldehyde dehydrogenase;	98.1
1vlu_A	468	Gamma-glutamyl phosphate reductase; YOR323C, struc	96.33
2h5g_A	463	Delta 1-pyrroline-5-carboxylate synthetase; dehydr	86.0

>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*

Probab=99.81  E-value=8.3e-20  Score=127.28  Aligned_cols=85  Identities=36%  Similarity=0.527  Sum_probs=79.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|+++++++++|+|.+++++||||||+.|++|+.++|++++++|+++++||....    .+|+|++||||.+++
T Consensus       299 ~d~f~~~l~~~~~~l~vGdp~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~G~~~~Ptvl~~v~  378 (490)
T 2wme_A          299 QARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCR  378 (490)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCC
T ss_pred             HHHHHHHHHHHHHhCcCCCCccccCccCCcCCHHHHHHHHHHHHHHHhcCCEEEECCcccCcccccCCCccCCEEEEcCC
Confidence            6889999999999999999999999999999999999999999999999999999997532    358999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      ++|++++||
T Consensus       379 ~~~~i~~eE  387 (490)
T 2wme_A          379 DDMTIVREE  387 (490)
T ss_dssp             TTSHHHHSC
T ss_pred             CCChhhhcc
Confidence            999999998

>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q

Probab=99.81  E-value=1.8e-19  Score=125.39  Aligned_cols=85  Identities=27%  Similarity=0.395  Sum_probs=79.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++|||||+.|++|+.+++++++++|+++++||......|+|++|||+.+++++|+
T Consensus       304 ~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~  383 (484)
T 3ifg_A          304 YDAFADKLAAAVSKLKVGRGTESGATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMD  383 (484)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEEEECTTSG
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCceEcCEEEecCCCCCh
Confidence            68899999999999999999999999999999999999999999999999999999976434799999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       384 i~~eE  388 (484)
T 3ifg_A          384 VAKEE  388 (484)
T ss_dssp             GGTSC
T ss_pred             hhCCe
Confidence            99998

>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*

Probab=99.81  E-value=2.1e-19  Score=125.94  Aligned_cols=85  Identities=31%  Similarity=0.488  Sum_probs=79.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+++++||||||+.|++|+.+++++++++|+++++||......|+|++||||.+++++|+
T Consensus       335 ~d~f~~~l~~~~~~~~vGdp~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~  414 (517)
T 2o2p_A          335 HNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMY  414 (517)
T ss_dssp             HHHHHHHHHHHHTTCCBSCTTSTTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSG
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeccccCCCCCCeECCEEEeCCCCCCh
Confidence            58899999999999999999999999999999999999999999999999999999976433689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       415 i~~eE  419 (517)
T 2o2p_A          415 IAKEE  419 (517)
T ss_dssp             GGTSC
T ss_pred             hhhcc
Confidence            99998

>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A

Probab=99.81  E-value=2.5e-19  Score=126.54  Aligned_cols=85  Identities=22%  Similarity=0.384  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHhhccccccCC-CCCCCCccccCCHHHHHHHHHHHHHHHH-CCCeEEeCCcccCCCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQG-LRAGTIWGRKIDKEQMDKILEFIESGKS-QGAQLVAGGGRAGDKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~-~~~~~~~gpli~~~~~~rv~~~l~~a~~-~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+| .++++++|||||+.+++|+.++|+++++ +|+++++||..+...|+|++|||+.+++++
T Consensus       361 ~d~f~~~l~~~~~~l~vGdp~~d~~~~~Gpli~~~~~~rv~~~i~~a~~~~ga~v~~GG~~~~~~G~fv~PTvl~~v~~~  440 (563)
T 4e3x_A          361 WPQIKGRLLEEHSRIKVGDPAEDFGTFFSAVIDAKAFARIKKWLEHARSSPSLSILAGGQCNESVGYYVEPCIIESKDPQ  440 (563)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTTCTTCSBCCCSCHHHHHHHHHHHHHHHHCTTEEEEECCCEECSSSCEECCEEEEESCTT
T ss_pred             HHHHHHHHHHHHHhccCCCcccCcCCccCCCcCHHHHHHHHHHHHHHhhcCCCEEEeCCccCCCCCcEecCEEEecCCCC
Confidence            78999999999999999999 8999999999999999999999999996 899999999866557999999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      +++++||
T Consensus       441 ~~i~~eE  447 (563)
T 4e3x_A          441 EPIMKEE  447 (563)
T ss_dssp             CGGGTSC
T ss_pred             ChhhcCC
Confidence            9999998

>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}

Probab=99.80  E-value=2e-19  Score=125.15  Aligned_cols=85  Identities=15%  Similarity=0.190  Sum_probs=79.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|++.++++++|+|.++++++|||||+.|++|+.+++++++++|+++++||...+..|+|++|||+.+++++|+
T Consensus       278 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~  357 (484)
T 3ros_A          278 YDEVLHELKNVFSNLKAGDPLEADTTLPPMNSEKAKEKLEAQVKEAIDAGAKVFYQYPEIDSKGAFFRPTILTDIAKDNP  357 (484)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEEECCCCCCSSCCCCCEEEECCCTTST
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCeEEecCCcCCCCCceeCCeEeecCCCCCc
Confidence            58899999999999999999999999999999999999999999999999999999875445799999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       358 i~~eE  362 (484)
T 3ros_A          358 VFDKE  362 (484)
T ss_dssp             TTTSC
T ss_pred             ccccc
Confidence            99998

>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}

Probab=99.79  E-value=3.7e-19  Score=124.39  Aligned_cols=85  Identities=27%  Similarity=0.343  Sum_probs=79.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCC-CCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD-KGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~-~g~~i~Ptii~~v~~~~   81 (87)
                      +++|.++|++.++++++|+|.++++++|||||++|++|+.+++++++++|+++++||...+. .|+|++|||+.+++++|
T Consensus       303 ~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~  382 (506)
T 3rh9_A          303 ADAFGQKLAERVNKMTVGDGMNDGIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREM  382 (506)
T ss_dssp             HHHHHHHHHHHHHHCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEESCCGGGCCSSSCCCCEEEECCCTTS
T ss_pred             HHHHHHHHHHHHHhccCCCCcccCCcccccCCHHHHHHHHHHHHHHHHCCCEEEecCCcCCCCCCcEECCeEEccCCCCC
Confidence            68899999999999999999999999999999999999999999999999999999975323 78999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      ++++||
T Consensus       383 ~i~~eE  388 (506)
T 3rh9_A          383 CCYQEE  388 (506)
T ss_dssp             HHHHSC
T ss_pred             hhhccc
Confidence            999998

>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*

Probab=99.79  E-value=4.6e-19  Score=123.78  Aligned_cols=85  Identities=33%  Similarity=0.542  Sum_probs=79.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~   80 (87)
                      +++|.++|++.++++++|+|.++++++|||||+.|++|+.+++++++++|+++++||....  ..|+|++|||+.+++++
T Consensus       307 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~g~~~~PTvl~~v~~~  386 (503)
T 3iwj_A          307 ATEFLNRIVKWIKNIKISDPLEEGCRLGPVVSEGQYEKILKFVSNAKSEGATILTGGSRPEHLKKGFFIEPTIITDVTTN  386 (503)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCCSSSCCCCEEEESCCTT
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCcccCccCHHHHHHHHHHHHHHHHCCCEEEecCCCCccCCCCceeCCeeeecCCCC
Confidence            5889999999999999999999999999999999999999999999999999999997543  46899999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      |.+++||
T Consensus       387 ~~i~~eE  393 (503)
T 3iwj_A          387 MQIWREE  393 (503)
T ss_dssp             SHHHHSC
T ss_pred             chhhCce
Confidence            9999998

>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...

Probab=99.79  E-value=5.1e-19  Score=123.55  Aligned_cols=85  Identities=39%  Similarity=0.680  Sum_probs=78.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++|||||++|++|+.+++++++++|+++++||......|+|++||||.+++++|+
T Consensus       315 ~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~  394 (500)
T 1o04_A          315 YDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMT  394 (500)
T ss_dssp             HHHHHHHHHHHHHHCCBCCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCCSSSSCBCCEEEESCCTTSH
T ss_pred             HHHHHHHHHHHHHhCcCCCcccccCccCcccCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEeCCCCCCh
Confidence            57899999999999999999999999999999999999999999999999999999976423689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       395 i~~eE  399 (500)
T 1o04_A          395 IAKEE  399 (500)
T ss_dssp             HHHSC
T ss_pred             hhhCc
Confidence            99998

>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*

Probab=99.79  E-value=3.7e-19  Score=124.19  Aligned_cols=85  Identities=25%  Similarity=0.370  Sum_probs=79.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCC-eEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGA-QLVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga-~i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++++++|+|.++++++|||||+.|++|+.+++++++++|+ ++++||...+..|+|++|||+.+++++|
T Consensus       316 ~d~f~~~l~~~~~~~~vG~p~d~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~v~~gG~~~~~~g~~~~PTvl~~v~~~~  395 (498)
T 4f3x_A          316 YEKLVADLTSAVSTIRYNLDDDTENEIGPLISRRQRDRVASFVERAADQKHIEITTGGRTGSDEGFFFQPTVVAGATQED  395 (498)
T ss_dssp             HHHHHHHHHHHHTTCCCSCSSGGGCSSCCCSCHHHHHHHHHHHHHHHHSTTCEEEECCSBCCSSSCCBCCEEEESCCTTS
T ss_pred             HHHHHHHHHHHHHhcccCCCccccCccccCcCHHHHHHHHHHHHHHHHCCCCEEEECCccCCCCCcEECCEEeecCCCCC
Confidence            688999999999999999999999999999999999999999999999999 9999997644579999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      ++++||
T Consensus       396 ~i~~eE  401 (498)
T 4f3x_A          396 EIVRRE  401 (498)
T ss_dssp             HHHHSC
T ss_pred             hhhCCc
Confidence            999998

>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*

Probab=99.79  E-value=5.9e-19  Score=123.71  Aligned_cols=85  Identities=29%  Similarity=0.452  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC----CCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG----DKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~----~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.++++++|||||+.|++|+.+++++++++|+++++||....    ..|+|++||||.+++
T Consensus       326 ~d~f~~~l~~~~~~l~vG~p~d~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~f~~PTvl~~v~  405 (520)
T 3ed6_A          326 KDKFEQALIDRVKKIKLGNGFDADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCD  405 (520)
T ss_dssp             HHHHHHHHHHHHTTCCBCCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCCCGGGTTTTCCCCEEEESCC
T ss_pred             HHHHHHHHHHHHHhccCCCCccCCCcccccCCHHHHHHHHHHHHHHHhCCCEEEeCCCcCccccCCCCceECCeEEecCC
Confidence            5788999999999999999999999999999999999999999999999999999997531    368999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      ++|++++||
T Consensus       406 ~~~~i~~eE  414 (520)
T 3ed6_A          406 TSMRIVQEE  414 (520)
T ss_dssp             TTSHHHHSC
T ss_pred             CCCccccCc
Confidence            999999998

>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*

Probab=99.79  E-value=5.7e-19  Score=123.34  Aligned_cols=85  Identities=46%  Similarity=0.751  Sum_probs=78.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++|||||++|++|+.+++++++++|+++++||......|+|++||||.+++++|.
T Consensus       316 ~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~PTvl~~v~~~~~  395 (501)
T 1bxs_A          316 YDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMR  395 (501)
T ss_dssp             HHHHHHHHHHHHTCCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCSEECSSSCEECCEEEESCCTTSH
T ss_pred             HHHHHHHHHHHHHhcCCCCCcccCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCeeCCEEEecCCCCCH
Confidence            57899999999999999999999999999999999999999999999999999999876433689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       396 i~~eE  400 (501)
T 1bxs_A          396 IAKEE  400 (501)
T ss_dssp             HHHSC
T ss_pred             HHhcc
Confidence            99998

>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}

Probab=99.79  E-value=9e-19  Score=121.72  Aligned_cols=85  Identities=27%  Similarity=0.432  Sum_probs=79.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++||++|+.|++|+.+++++++++|+++++||...+..|+|++|||+.++++++.
T Consensus       301 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~  380 (481)
T 3jz4_A          301 YDRFAEKLQQAMSKLHIGDGLDNGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAK  380 (481)
T ss_dssp             HHHHHHHHHHHHTTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEESCCTTSG
T ss_pred             HHHHHHHHHHHHHhccCCCCccCcCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCceeccEEEecCCCCcc
Confidence            68899999999999999999999999999999999999999999999999999999976434689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       381 i~~eE  385 (481)
T 3jz4_A          381 VSKEE  385 (481)
T ss_dssp             GGTSC
T ss_pred             ccccc
Confidence            99998

>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*

Probab=99.79  E-value=7.3e-19  Score=122.72  Aligned_cols=85  Identities=24%  Similarity=0.323  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++|||+|+.|++|+.+++++++++|+++++||...+..|+|++|||+.+++++|.
T Consensus       316 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gg~~~~~~g~~~~PTvl~~v~~~~~  395 (500)
T 2j6l_A          316 HDEVVNRLKKAYAQIRVGNPWDPNVLYGPLHTKQAVSMFLGAVEEAKKEGGTVVYGGKVMDRPGNYVEPTIVTGLGHDAS  395 (500)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSSCBCCEEEESCCTTCH
T ss_pred             HHHHHHHHHHHhhhcccCCcccCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCCEEcCEEEECCCCcCh
Confidence            68899999999999999999999999999999999999999999999999999999975334689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       396 i~~eE  400 (500)
T 2j6l_A          396 IAHTE  400 (500)
T ss_dssp             HHHSC
T ss_pred             hhcCc
Confidence            99998

>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}

Probab=99.78  E-value=7.4e-19  Score=122.58  Aligned_cols=85  Identities=34%  Similarity=0.570  Sum_probs=78.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--CCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--DKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--~~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+|.++++++|||||++|++|+.+++++++++|+++++||....  ..|+|++||||.+++++
T Consensus       301 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~g~~~~PTvl~~v~~~  380 (495)
T 3b4w_A          301 YDEIVAAVTNFVTALPVGPPSDPAAQIGPLISEKQRTRVEGYIAKGIEEGARLVCGGGRPEGLDNGFFIQPTVFADVDNK  380 (495)
T ss_dssp             HHHHHHHHHHHHHHSCBCCTTCTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCTTCTTSCCCCCEEEESCCTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCccCCCccCCCcCHHHHHHHHHHHHHHHhCCCEEEecCcccccccCCceeCCEEecCCCCC
Confidence            5889999999999999999999999999999999999999999999999999999987542  25899999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      |++++||
T Consensus       381 ~~i~~eE  387 (495)
T 3b4w_A          381 MTIAQEE  387 (495)
T ss_dssp             SHHHHSC
T ss_pred             Chhhhcc
Confidence            9999998

>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}

Probab=99.78  E-value=7.7e-19  Score=123.30  Aligned_cols=85  Identities=34%  Similarity=0.530  Sum_probs=79.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCC-CCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGD-KGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~-~g~~i~Ptii~~v~~~~   81 (87)
                      +++|.++|++.++++++|+|.++++++||+||++|++|+.+++++++++|+++++||..... .|+|++|||+.+++++|
T Consensus       317 ~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~  396 (528)
T 3u4j_A          317 RDALMERLLDISRKVAFGDPLNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDM  396 (528)
T ss_dssp             HHHHHHHHHHHHHHCCEECTTSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSEECTTTSCEECCEEEESCCTTS
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCcCCccCCccCHHHHHHHHHHHHHHHHCCCEEEeCCCcCCCCCCcEecceEEecCCCCC
Confidence            57899999999999999999999999999999999999999999999999999999976533 68999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      ++++||
T Consensus       397 ~i~~eE  402 (528)
T 3u4j_A          397 SIAREE  402 (528)
T ss_dssp             HHHHSC
T ss_pred             ccccce
Confidence            999998

>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}

Probab=99.78  E-value=8.3e-19  Score=122.42  Aligned_cols=85  Identities=42%  Similarity=0.692  Sum_probs=78.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCc-ccC--CCCceEeeEEEeeCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG-RAG--DKGFYVQPTVFANVRD   79 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~-~~~--~~g~~i~Ptii~~v~~   79 (87)
                      |++|.++|++.++++++|+|.++++++|||||+.|++|+.+++++++++|+++++||. ...  ..|+|++|||+.++++
T Consensus       316 ~d~f~~~l~~~~~~~~vG~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~  395 (497)
T 3i44_A          316 YDKAIKTAKDIAEKTQVGPGHQTGNHIGPVVSKEQYDKIQDLIQSGIDEGATLVTGGTGLPMGMERGYYVRPTVFADVKP  395 (497)
T ss_dssp             HHHHHHHHHHHHHHCCBCCTTSCSSCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSSCCTTCCSSCCCCCEEEESCCT
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCcCCCCcEECCEEEEeCCC
Confidence            5889999999999999999999999999999999999999999999999999999994 321  2689999999999999


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      +|++++||
T Consensus       396 ~~~i~~eE  403 (497)
T 3i44_A          396 HMRIFREE  403 (497)
T ss_dssp             TSHHHHSC
T ss_pred             CCHHHcCc
Confidence            99999998

>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}

Probab=99.78  E-value=1e-18  Score=122.13  Aligned_cols=83  Identities=29%  Similarity=0.482  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++||+||++|++|+.+++++++++|+++++||...  .|+|++|||+.+++++|+
T Consensus       324 ~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~--~g~~~~PTvl~~v~~~~~  401 (504)
T 3ek1_A          324 YDKFAEKLAAKVKELKVGNGTEPGVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKEL--GGLFFEPGILTGVTSDML  401 (504)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEE--ETTEECCEEEEEECTTSG
T ss_pred             HHHHHHHHHHHHhhcccCCCccccCccccccCHHHHHHHHHHHHHHHHCCCEEEeCCccC--CCceECCeEEecCCCcCh
Confidence            578899999999999999999999999999999999999999999999999999999752  689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       402 i~~eE  406 (504)
T 3ek1_A          402 VAKEE  406 (504)
T ss_dssp             GGTSC
T ss_pred             hhccc
Confidence            99998

>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*

Probab=99.78  E-value=1.4e-18  Score=120.71  Aligned_cols=85  Identities=20%  Similarity=0.354  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHhhccccccCCCC-CCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLR-AGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~-~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++++++|+|.+ +++++|||||+.|++|+.+++++++++|+++++||...+..|+|++|||+.+++++|
T Consensus       298 ~d~f~~~l~~~~~~~~~g~p~~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~g~~~~Ptvl~~v~~~~  377 (479)
T 2imp_A          298 YDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAALERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEM  377 (479)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTTCSSCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCCCSSSCCCCCEEEESCCTTS
T ss_pred             HHHHHHHHHHHHHhcccCCccccCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEECCcccCCCCceECCEEEeCCCCCC
Confidence            5889999999999999999998 899999999999999999999999999999999987532368999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      ++++||
T Consensus       378 ~~~~eE  383 (479)
T 2imp_A          378 SIMHEE  383 (479)
T ss_dssp             GGGGSC
T ss_pred             HHHhCc
Confidence            999998

>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}

Probab=99.77  E-value=1.3e-18  Score=121.93  Aligned_cols=85  Identities=24%  Similarity=0.284  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc----CCCCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA----GDKGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~----~~~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.++++++||+||+.|++|+.+++++++++|+++++||...    ...|+|++||||.+++
T Consensus       318 ~d~f~~~l~~~~~~~~vG~~~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~PTvl~~v~  397 (521)
T 4e4g_A          318 ANRLIDKLVPMVESLRIGPYTDEKADMGPVVTKEAEQRIRSLIDSGIEQGAKLVVDGRDFKLQGYENGHFIGGCLFDDVT  397 (521)
T ss_dssp             HHHHHHHHHHHHHTCCBCCTTCTTCSBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCCTTCTTSCCCCCEEEESCC
T ss_pred             HHHHHHHHHHHHHhccCCCCCCccCccCCCCCHHHHHHHHHHHHHHHHCCCEEEecCcccCCCcCCCCcEECCEEEEcCC
Confidence            678899999999999999999999999999999999999999999999999999999642    1468999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      ++|++++||
T Consensus       398 ~~~~i~~eE  406 (521)
T 4e4g_A          398 PDMDIYKTE  406 (521)
T ss_dssp             TTSHHHHSC
T ss_pred             CCCHhhcCc
Confidence            999999998

>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A

Probab=99.77  E-value=1.7e-18  Score=120.83  Aligned_cols=84  Identities=20%  Similarity=0.301  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCC-CeEEeCCc-ccCCCCceEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQG-AQLVAGGG-RAGDKGFYVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~G-a~i~~gg~-~~~~~g~~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.++++++|+|.+++++||||||+.|++|+.+++++++++| +++++||. .. ..|+|++|||+.+++++
T Consensus       314 ~d~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~G~a~~~~gG~~~~-~~g~~~~PTvl~~v~~~  392 (495)
T 1wnd_A          314 YDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRK-GNGYYYAPTLLAGALQD  392 (495)
T ss_dssp             HHHHHHHHHHHHHTCCBCCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTSSCEEEECCSBCS-SSSCCBCCEEEECCCTT
T ss_pred             HHHHHHHHHHHHHhccCCCCccCCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEECCcccC-CCCCeeCCEEEeCCCCC
Confidence            68899999999999999999999999999999999999999999999999 99999987 53 36899999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      |++++||
T Consensus       393 ~~i~~eE  399 (495)
T 1wnd_A          393 DAIVQKE  399 (495)
T ss_dssp             SHHHHSC
T ss_pred             Chhhhcc
Confidence            9999998

>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A

Probab=99.77  E-value=1.9e-18  Score=119.50  Aligned_cols=85  Identities=21%  Similarity=0.242  Sum_probs=79.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++|||+++.|++|+.+++++++++|+++++||...+..|+|++|||+.+++++++
T Consensus       281 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~ga~~~~gg~~~~~~g~~~~Ptvl~~v~~~~~  360 (462)
T 3etf_A          281 AQAFTDRFVAAAAALKMGDPLVEENDLGPMARFDLRDELHQQVQASVAEGARLLLGGEKIAGEGNYYAATVLADVTPDMT  360 (462)
T ss_dssp             HHHHHHHHHHHHHHCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCSSSSCCBCCEEEESCCTTSH
T ss_pred             HHHHHHHHHHHHHhhcCCCCccccCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcccCCCCcEEeeEEEECCCCCCh
Confidence            57889999999999999999999999999999999999999999999999999999975445799999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       361 ~~~eE  365 (462)
T 3etf_A          361 AFRQE  365 (462)
T ss_dssp             HHHSC
T ss_pred             hhcCc
Confidence            99998

>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A

Probab=99.77  E-value=1.8e-18  Score=121.64  Aligned_cols=84  Identities=31%  Similarity=0.535  Sum_probs=78.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++||+||+.|++|+.+++++++++| ++++||......|+|++|||+.+++++|+
T Consensus       334 ~d~f~~~l~~~~~~~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~G-~~~~gG~~~~~~g~~~~PTvl~~v~~~~~  412 (538)
T 3qan_A          334 YDEVLEKTVALAKNLTVGDPTNRDNYMGPVIDEKAFEKIMSYIEIGKKEG-RLMTGGEGDSSTGFFIQPTIIADLDPEAV  412 (538)
T ss_dssp             HHHHHHHHHHHHTTCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHS-EEEECCCEECSSSCEECCEEEESCCTTSH
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCCcCccCHHHHHHHHHHHHHHHHCC-eEEeCCCcCCCCCceeCCeeeecCCCCCh
Confidence            58899999999999999999999999999999999999999999999999 99999976533799999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       413 i~~eE  417 (538)
T 3qan_A          413 IMQEE  417 (538)
T ss_dssp             HHHSC
T ss_pred             hhCCC
Confidence            99998

>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*

Probab=99.77  E-value=1.8e-18  Score=120.89  Aligned_cols=85  Identities=32%  Similarity=0.486  Sum_probs=78.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc--C----CCCceEeeEEEee
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA--G----DKGFYVQPTVFAN   76 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~--~----~~g~~i~Ptii~~   76 (87)
                      |++|.++|++.++++++|+|.++++++|||||+.|++|+.+++++++++|+++++||...  .    ..|+|++|||+.+
T Consensus       310 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~g~~~~PTvl~~  389 (503)
T 1a4s_A          310 MPQFLEEVVKRTKAIVVGDPLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDN  389 (503)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSBCCCSSGGGTTSCCBCCEEEES
T ss_pred             HHHHHHHHHHHHHhcCCCCCcccCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCcccccccccccCCceeCCEEEec
Confidence            588999999999999999999999999999999999999999999999999999998753  1    2589999999999


Q ss_pred             CCCCCcchhcC
Q psy5845          77 VRDDMKIAREE   87 (87)
Q Consensus        77 v~~~~~i~~eE   87 (87)
                      ++++|++++||
T Consensus       390 v~~~~~i~~eE  400 (503)
T 1a4s_A          390 CRDDMTCVKEE  400 (503)
T ss_dssp             CCTTSHHHHSC
T ss_pred             CCCCCHHHhcc
Confidence            99999999998

>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}

Probab=99.76  E-value=1.4e-18  Score=121.22  Aligned_cols=85  Identities=25%  Similarity=0.365  Sum_probs=76.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcc--cCC--CCceEeeEEEeeCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGR--AGD--KGFYVQPTVFANVR   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~--~~~--~g~~i~Ptii~~v~   78 (87)
                      |++|.++|++.++++++|+|.++++++||+||++|++|+.+++++++++|+++++||..  .+.  .|+|+.|||+.+++
T Consensus       304 ~d~f~~~l~~~~~~~~vg~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~~~~Ptvl~~v~  383 (497)
T 3k2w_A          304 YDEFMAKFLPLVKGLKVGDPMDADSQMGPKCNQREIDNIDHIVHEAIKQGATVATGGKTATVEGFEGGCWYEPTVLVDVK  383 (497)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHHCEEEECCC---------CCCCCCEEEESCC
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCccccCcCHHHHHHHHHHHHHHHHCCCEEEecCccCCccccCCCceeCCEEEecCC
Confidence            68899999999999999999999999999999999999999999999999999999973  222  68999999999999


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      ++|++++||
T Consensus       384 ~~~~i~~eE  392 (497)
T 3k2w_A          384 QDNIVVHEE  392 (497)
T ss_dssp             TTSHHHHSC
T ss_pred             CCcHhhcCC
Confidence            999999998

>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}

Probab=99.76  E-value=2.4e-18  Score=120.53  Aligned_cols=85  Identities=42%  Similarity=0.603  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC---CCCceEeeEEEeeCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG---DKGFYVQPTVFANVRD   79 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~---~~g~~i~Ptii~~v~~   79 (87)
                      +++|.++|++.++++++|+|.++++++|||||++|++|+.++|++++++|+++++||...+   ..|+|+.|||+.++++
T Consensus       305 ~d~f~~~l~~~~~~~~~G~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~  384 (517)
T 3r31_A          305 KARFLENLKRRTEAMILGDPLDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTD  384 (517)
T ss_dssp             HHHHHHHHHHHHHHCCBCCTTSTTCSBCCBSCHHHHHHHHHHHHHHHHHTCEEEECCSCCSSCCSSSBCCCCEEEEEECT
T ss_pred             HHHHHHHHHHHHHhccCCCCCCcCCcccCCcCHHHHHHHHHHHHHHHhCCCEEEECCccCcccCCCCceECCEEEecCCC
Confidence            5889999999999999999999999999999999999999999999999999999993121   3689999999999999


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      +|++++||
T Consensus       385 ~~~i~~eE  392 (517)
T 3r31_A          385 DMTIAREE  392 (517)
T ss_dssp             TSHHHHSC
T ss_pred             CCccccce
Confidence            99999998

>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*

Probab=99.76  E-value=5.4e-18  Score=118.04  Aligned_cols=81  Identities=22%  Similarity=0.252  Sum_probs=76.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++|||||+.|++|+.+++++++++|+++++||..   .|+|++|||+ +++++|+
T Consensus       288 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~---~g~~~~Ptvl-~v~~~~~  363 (486)
T 3pqa_A          288 ADKFIEMFVNKAKVLNVGNPLDEKTDVGPLISVEHAEWVEKVVEKAIDEGGKLLLGGKR---DKALFYPTIL-EVDRDNI  363 (486)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCE---ETTEECCEEE-ECCTTSG
T ss_pred             HHHHHHHHHHHHHhcccCCCCcCCCCcCCCCCHHHHHHHHHHHHHHHHCCCEEEecCCC---CCcEeccEEE-eCCCCCh
Confidence            58899999999999999999999999999999999999999999999999999999964   5799999999 9999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       364 i~~eE  368 (486)
T 3pqa_A          364 LCKTE  368 (486)
T ss_dssp             GGTCC
T ss_pred             hhccc
Confidence            99998

>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}

Probab=99.76  E-value=4.9e-18  Score=118.93  Aligned_cols=84  Identities=35%  Similarity=0.556  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC--------CCCceEeeEEE
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG--------DKGFYVQPTVF   74 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~--------~~g~~i~Ptii   74 (87)
                      |++|.++|++.++++++|+|.++++++|||||++|++|+.++|++++++|+++++||....        ..|+|++|||+
T Consensus       318 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~~~~~~~~~~~~~g~~~~PTvl  397 (515)
T 2d4e_A          318 FEDFVGKVVERARAIRVGHPLDPETEVGPLIHPEHLQRVLGYVEAGKREGARLLVGGERAKTSFRGEDLSRGNYLLPTVF  397 (515)
T ss_dssp             HHHHHHHHHHHHHHCCBCCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCBCTTSCBCTTTTCBCCEEE
T ss_pred             HHHHHHHHHHHHhhcccCCcccccCccCCCcCHHHHHHHHHHHHHHHHCCCEEEeCCccccccccccccCCCceeCCEEE
Confidence            5789999999999999999999999999999999999999999999999999999997542        25899999999


Q ss_pred             eeCCCCCcchhcC
Q psy5845          75 ANVRDDMKIAREE   87 (87)
Q Consensus        75 ~~v~~~~~i~~eE   87 (87)
                      .+ +++|.+++||
T Consensus       398 ~~-~~~~~i~~eE  409 (515)
T 2d4e_A          398 VG-ENHMKIAQEE  409 (515)
T ss_dssp             EC-CTTSHHHHSC
T ss_pred             eC-CCCChhhhcc
Confidence            99 9999999998

>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*

Probab=99.75  E-value=5.7e-18  Score=118.37  Aligned_cols=81  Identities=25%  Similarity=0.294  Sum_probs=76.4

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|. +++++||+||++|++|+.+++++++++|+++++||..   .|+|++|||+.+++++|+
T Consensus       306 ~d~f~~~l~~~~~~~~~g~p~-~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~---~g~~~~PTvl~~v~~~~~  381 (505)
T 3prl_A          306 ADQLVANIKELVEQLTVGSPE-DDADITPVIDEKSAAFIQGLIDDALENGATLLSGNKR---QGNLLSPTLLDDVTPAMR  381 (505)
T ss_dssp             HHHHHHHHHHHHHHCCBSCTT-TTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCE---ETTEECCEEEESCCTTSG
T ss_pred             HHHHHHHHHHHHHhcccCCCC-CcCcCCcccCHHHHHHHHHHHHHHHHCCCEEEecCCC---CCceeCCeEeecCCCCCh
Confidence            578899999999999999998 8999999999999999999999999999999999973   589999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       382 i~~eE  386 (505)
T 3prl_A          382 VAWEE  386 (505)
T ss_dssp             GGTSC
T ss_pred             hhcCC
Confidence            99998

>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*

Probab=99.75  E-value=3.7e-18  Score=118.85  Aligned_cols=84  Identities=29%  Similarity=0.430  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHhhcc-ccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCc-eEeeEEEeeCCCC
Q psy5845           3 WTSAAVFTKDLDKT-NYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGF-YVQPTVFANVRDD   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~-~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~-~i~Ptii~~v~~~   80 (87)
                      |++|.++|++.+++ +++|+|.++++++|||||+.|++|+.+++++++++|+++++||... ..|+ |++|||+.+++++
T Consensus       305 ~d~f~~~l~~~~~~~~~~G~p~~~~~~~gpli~~~~~~rv~~~i~~a~~~Ga~~~~gg~~~-~~g~~~~~Ptvl~~v~~~  383 (487)
T 2w8n_A          305 HDAFVKAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRH-QLGKNFFEPTLLCNVTQD  383 (487)
T ss_dssp             HHHHHHHHHHHHHHHCCBSCTTSTTCCBCCCSSHHHHHHHHHHHHHHHTTTCEEEECCSBC-TTCTTCBCCEEEEEECGG
T ss_pred             HHHHHHHHHHHHHhhcccCCcccccCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCccC-CCCCceECCEEEecCCCc
Confidence            57889999999999 9999999999999999999999999999999999999999999764 3688 9999999999999


Q ss_pred             CcchhcC
Q psy5845          81 MKIAREE   87 (87)
Q Consensus        81 ~~i~~eE   87 (87)
                      |++++||
T Consensus       384 ~~i~~eE  390 (487)
T 2w8n_A          384 MLCTHEE  390 (487)
T ss_dssp             GGTTCTT
T ss_pred             chhhhcc
Confidence            9999998

>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}

Probab=99.75  E-value=6e-18  Score=118.29  Aligned_cols=82  Identities=32%  Similarity=0.365  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++|||||+.|++|+.+++++++++|+++++||..   .|+|+.|||+.+++++++
T Consensus       307 ~d~f~~~l~~~~~~~~~G~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~---~g~~~~Ptvl~~v~~~~~  383 (508)
T 3r64_A          307 HDEFLEKFVEAVKNIPTGDPSAEGTLVGPVINDSQLSGLKEKIELAKKEGATVQVEGPI---EGRLVHPHVFSDVTSDME  383 (508)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSSSCCBCCCSCHHHHHHHHHHHHHHHTTTCEEEECCCE---ETTEECCEEEEEECTTSG
T ss_pred             HHHHHHHHHHHHHhccCCCCccCCCcccCCCCHHHHHHHHHHHHHHHHcCCEEEecCCC---CCcEEecEEEecCCCCCh
Confidence            57889999999999999999999999999999999999999999999999999999975   589999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       384 i~~eE  388 (508)
T 3r64_A          384 IAREE  388 (508)
T ss_dssp             GGTSC
T ss_pred             hhccc
Confidence            99998

>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*

Probab=99.75  E-value=6.1e-18  Score=118.12  Aligned_cols=82  Identities=24%  Similarity=0.310  Sum_probs=77.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCC-ceEeeEEEeeCC---
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKG-FYVQPTVFANVR---   78 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g-~~i~Ptii~~v~---   78 (87)
                      +++|.++|++.++++++|+|.++++++|||||+.|++|+.+++++++++|+++++||..   .| +|++|||+.+++   
T Consensus       310 ~d~f~~~l~~~~~~~~~g~p~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~~~~gG~~---~g~~~~~Ptvl~~v~~~~  386 (501)
T 1uxt_A          310 YGKLVEEVAKRLSSLRVGDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRR---LGPTYVQPTFVEAPADRV  386 (501)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCB---CSSSCBCCEEEECCHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCccccCCcccCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcc---CCCceECCEEEeCCCCCC
Confidence            57899999999999999999999999999999999999999999999999999999865   57 999999999999   


Q ss_pred             CCCcchhcC
Q psy5845          79 DDMKIAREE   87 (87)
Q Consensus        79 ~~~~i~~eE   87 (87)
                      ++|.+++||
T Consensus       387 ~~~~i~~eE  395 (501)
T 1uxt_A          387 KDMVLYKRE  395 (501)
T ss_dssp             TTSHHHHSC
T ss_pred             CcCHHHhCc
Confidence            999999998

>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}

Probab=99.74  E-value=7.5e-18  Score=117.25  Aligned_cols=85  Identities=29%  Similarity=0.518  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc-CCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA-GDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~-~~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++++++|+|.++++++||+||+.|++|+.+++++++++|+++++||... ...|+|++|||+.+++++|
T Consensus       296 ~d~f~~~l~~~~~~~~vG~~~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~g~~~~Ptvl~~v~~~~  375 (486)
T 1t90_A          296 ADEFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEM  375 (486)
T ss_dssp             HHHHHHHHHHHHTTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECSSSSCCSSSSCCCCEEEESCCTTS
T ss_pred             HHHHHHHHHHHHHhcccCCCCccCCccCCCCCHHHHHHHHHHHHHHHhCCCEEEeCCccCCCCCCCEECCEEEeCCCCCC
Confidence            578999999999999999999999999999999999999999999999999999998642 1358999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      ++++||
T Consensus       376 ~~~~eE  381 (486)
T 1t90_A          376 TIWKDE  381 (486)
T ss_dssp             HHHHSC
T ss_pred             HhhcCc
Confidence            999998

>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}

Probab=99.74  E-value=9.6e-18  Score=116.61  Aligned_cols=82  Identities=28%  Similarity=0.353  Sum_probs=77.3

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|++.++++++|+|.++++++||++|+.|++|+.+++++++++|+++++||..   .|+|++|||+.+++++++
T Consensus       300 ~d~f~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~v~~gg~~---~g~~~~Ptvl~~v~~~~~  376 (485)
T 4dng_A          300 YDEFVEKFTARVKQLPYGDQTDPKTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKR---VGNVLTPYVFVGADNNSK  376 (485)
T ss_dssp             HHHHHHHHHHHHHHCCBSCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCE---ETTEECCEEEESCCTTSH
T ss_pred             HHHHHHHHHHHHHhccCCCCCcCCCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCCC---CCcEECCEEEecCCCCCh
Confidence            57888999999999999999999999999999999999999999999999999999975   589999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       377 i~~eE  381 (485)
T 4dng_A          377 IAQTE  381 (485)
T ss_dssp             HHHCC
T ss_pred             hhcCc
Confidence            99998

>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*

Probab=99.74  E-value=7.9e-18  Score=117.86  Aligned_cols=83  Identities=33%  Similarity=0.511  Sum_probs=76.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+| ++++++|||||+.|++|+.+++++++++| ++++||......|+|++|||+.+++++|+
T Consensus       335 ~d~f~~~l~~~~~~~~~G~p-~~~~~~Gpli~~~~~~~v~~~i~~a~~~G-~v~~gg~~~~~~g~~~~Ptvl~~v~~~~~  412 (516)
T 1uzb_A          335 YEPVLERVLKRAERLSVGPA-EENPDLGPVVSAEQERKVLSYIEIGKNEG-QLVLGGKRLEGEGYFIAPTVFTEVPPKAR  412 (516)
T ss_dssp             HHHHHHHHHHHHTTCCBSCG-GGCCSBCCCSCHHHHHHHHHHHHHHTTTS-EEEECCSBCSSSSCCBCCEEEESCCTTSG
T ss_pred             HHHHHHHHHHHHHhccCCCC-ccccccCCCCCHHHHHHHHHHHHHHHHCC-CEEECCccCCCCCcEECCEEEECCCCCCH
Confidence            57899999999999999999 88999999999999999999999999888 88899875323689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       413 i~~eE  417 (516)
T 1uzb_A          413 IAQEE  417 (516)
T ss_dssp             GGTSC
T ss_pred             hhhcc
Confidence            99998

>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}

Probab=99.74  E-value=1.1e-17  Score=116.21  Aligned_cols=85  Identities=33%  Similarity=0.495  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc-C--CCCceEeeEEEeeCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA-G--DKGFYVQPTVFANVRD   79 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~-~--~~g~~i~Ptii~~v~~   79 (87)
                      +++|.++|++.++++++|+|.++++++|||+|++|++|+.+++++++++|+++++||... .  ..|+|++|||+.++++
T Consensus       295 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~~~~g~~~~Ptvl~~v~~  374 (478)
T 3ty7_A          295 KDAFLAELKEQFSQVRVGNPREDGTQVGPIISKKQFDQVQNYINKGIEEGAELFYGGPGKPEGLEKGYFARPTIFINVDN  374 (478)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSSCCTTCCSSCCCCCEEEESCCT
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCccCCCcCHHHHHHHHHHHHHHHHCCCEEEecCccCccccCCCceeCCEEEecCCC
Confidence            588999999999999999999999999999999999999999999999999999998422 1  3689999999999999


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      ++++++||
T Consensus       375 ~~~~~~eE  382 (478)
T 3ty7_A          375 QMTIAQEE  382 (478)
T ss_dssp             TSHHHHSC
T ss_pred             CCcccCce
Confidence            99999998

>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}

Probab=99.73  E-value=1.7e-17  Score=115.63  Aligned_cols=84  Identities=17%  Similarity=0.108  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHhhccccccC-CCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQ-GLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~-~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      +++|.++|++.++++++|+ |.++++++|||+++.|++|+.+++++++++|+++++||...+..|+|++|||+. +++++
T Consensus       296 ~d~f~~~l~~~~~~~~~G~~~~~~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~PTvl~-v~~~~  374 (490)
T 3ju8_A          296 GDALLARLVAVSATLRVGRFDEQPAPFMGAVISLSAAEHLLKAQEHLIGKGAQPLLAMTQPIDGAALLTPGILD-VSAVA  374 (490)
T ss_dssp             HHHHHHHHHHHHHHCCBCCTTCSSCCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCCCSTTSCCCCCEEEE-CTTCS
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCCcCccccccCHHHHHHHHHHHHHHHHCCCEEEECCCccCCCCCEEccEEEE-eCCCC
Confidence            4789999999999999999 999999999999999999999999999999999999987544579999999998 99999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .+++||
T Consensus       375 ~i~~eE  380 (490)
T 3ju8_A          375 ERPDEE  380 (490)
T ss_dssp             SCCCCC
T ss_pred             cccccc
Confidence            999998

>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*

Probab=99.73  E-value=1e-17  Score=116.23  Aligned_cols=81  Identities=20%  Similarity=0.211  Sum_probs=75.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|++.++++++|+|.+ ++++|||+|+.|++|+.+++++++++|+++++||..   .|+|++|||+.+++++|+
T Consensus       297 ~d~f~~~l~~~~~~~~~g~p~~-~~~~gpli~~~~~~~v~~~i~~a~~~Ga~~~~gG~~---~g~~~~Ptvl~~v~~~~~  372 (475)
T 1euh_A          297 ADELVEKIREKVLALTIGNPED-DADITPLIDTKSADYVEGLINDANDKGATALTEIKR---EGNLICPILFDKVTTDMR  372 (475)
T ss_dssp             HHHHHHHHHHHHHTSCBSCGGG-TCSBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCCE---ETTEECCEEEESCCTTSG
T ss_pred             HHHHHHHHHHHHHhccCCCccc-cCccCCCCCHHHHHHHHHHHHHHHHCCCEEEeCCcc---CCceeCCEEEeCCCCcCH
Confidence            5788999999999999999988 899999999999999999999999999999999865   489999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       373 ~~~eE  377 (475)
T 1euh_A          373 LAWEE  377 (475)
T ss_dssp             GGTSC
T ss_pred             HHcCc
Confidence            99998

>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}

Probab=99.73  E-value=1.3e-17  Score=115.76  Aligned_cols=85  Identities=24%  Similarity=0.280  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC-CCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG-DKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~-~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.+++++.++++++|+|.++++++||+||+.|++|+.+++++++++|++++.||.... ..|+|++|||+.++++++
T Consensus       279 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~v~~~i~~a~~~ga~v~~Gg~~~~~~~g~~~~Ptv~~~v~~~~  358 (474)
T 4h7n_A          279 FEEFYHQLIAKAHRLQLAYPLVEDGAIGPIIAEKQAGIINDHILDAVEKGAVIHCGGKVEELGGGWWCRPTVMTNVNHSM  358 (474)
T ss_dssp             HHHHHHHHHHHHHHCCBCCSSGGGCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCCEEETTEEECCCEEEESCCTTS
T ss_pred             HHHHHHHHHHHhhccccCCCcccccccCccccHHHHHHHHHHHHHHHhhCceeccCCcccccCCCcccCceeEEeecccc
Confidence            6789999999999999999999999999999999999999999999999999999987542 468999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      ++++||
T Consensus       359 ~i~~eE  364 (474)
T 4h7n_A          359 KVMTEE  364 (474)
T ss_dssp             GGGTSC
T ss_pred             cccccc
Confidence            999998

>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*

Probab=99.73  E-value=1.9e-17  Score=116.25  Aligned_cols=84  Identities=17%  Similarity=0.102  Sum_probs=75.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc-----C-CCCceEeeEEEee
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA-----G-DKGFYVQPTVFAN   76 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~-----~-~~g~~i~Ptii~~   76 (87)
                      |++|.++|++.++++++|+|.+++++||||||+.|++|+.++|+++ .+|+++++||...     . ..|+|++||||.+
T Consensus       312 ~d~f~~~l~~~~~~~~vG~p~~~~~~~Gpli~~~~~~rv~~~i~~a-~~ga~~~~GG~~~~~~~~~~~~g~~~~PTvl~~  390 (534)
T 2y53_A          312 LEPVLEALKAKLAKITVGNPRNDAVRMGSLVSREQYENVLAGIAAL-REEAVLAYDSSAVPLIDADANIAACVAPHLFVV  390 (534)
T ss_dssp             HHHHHHHHHHHHTTCCBBCTTSTTCSBCCCSCHHHHHHHHHHHHHH-HTSSEEEEECTTSCCBSCCTTTSCCCCCEEEEC
T ss_pred             HHHHHHHHHHHHHhccCCCCCcCCCCccCCCCHHHHHHHHHHHHHH-HcCCEEEECCcccccccccCCCCceecCEEEEe
Confidence            6889999999999999999999999999999999999999999999 6899999988642     1 3589999999999


Q ss_pred             CCCC--CcchhcC
Q psy5845          77 VRDD--MKIAREE   87 (87)
Q Consensus        77 v~~~--~~i~~eE   87 (87)
                      ++++  +.+++||
T Consensus       391 v~~~~~~~i~~eE  403 (534)
T 2y53_A          391 NDPDNATLLHDVE  403 (534)
T ss_dssp             SCGGGCSSTTTCC
T ss_pred             cCccccCHHHhCC
Confidence            9877  6899998

>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}

Probab=99.70  E-value=4.2e-17  Score=121.17  Aligned_cols=84  Identities=21%  Similarity=0.364  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.+.++++||+|++.+++++.++|++++++| ++++||..+...|+|++|||+.++++++.
T Consensus       828 ~d~f~~~L~~~~~~l~vG~p~d~~t~~Gpvi~~~~~~~v~~~i~~a~~~G-~~v~gG~~~~~~G~fv~PTvl~~v~~~~~  906 (1026)
T 4f9i_A          828 YDKFIERLVSMAKATKVGPSEDPANYMGAVADDKAMKSIKEYAEIGKREG-HVLYESPVPAGEGYFVPMTIIGGIKPEHR  906 (1026)
T ss_dssp             HHHHHHHHHHHHHHCCBCCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHHS-EEEEECCCCSSSSCCCCCEEEESCCTTSG
T ss_pred             HHHHHHHHHHHHHhcccCCcccccCccccccCHHHHHHHHHHHHHHHhCC-eEEecCCcCCCCCceecceeeecCCCCcc
Confidence            68899999999999999999999999999999999999999999999988 89999876533499999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       907 i~~eE  911 (1026)
T 4f9i_A          907 IAQEE  911 (1026)
T ss_dssp             GGTSC
T ss_pred             ccCce
Confidence            99998

>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*

Probab=99.67  E-value=1.8e-16  Score=110.05  Aligned_cols=78  Identities=19%  Similarity=0.331  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|++.++++ +|+|.++++++|||||++|++|+.+++     +|+++++||..+ ..|+|++|||+.+++++|+
T Consensus       273 ~d~f~~~l~~~~~~~-~g~~~~~~~~~gpli~~~~~~rv~~~i-----~ga~v~~GG~~~-~~g~~~~PTvl~~v~~~~~  345 (469)
T 3sza_A          273 QNQIVEKLKKSLKEF-YGEDAKKSRDYGRIISARHFQRVMGLI-----EGQKVAYGGTGD-AATRYIAPTILTDVDPQSP  345 (469)
T ss_dssp             HHHHHHHHHHHHHHH-HCSCGGGCTTCCCCSCHHHHHHHHHHH-----TTSEEEECCCEE-TTTTEECCEEEESCCTTSG
T ss_pred             HHHHHHHHHHHHHHh-cCCCCcccCcccccCCHHHHHHHHHHH-----cCCEEEeCCccC-CCCceeCCeeecCCCCcch
Confidence            578889999999988 599888899999999999999999998     599999999865 4789999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       346 i~~eE  350 (469)
T 3sza_A          346 VMQEE  350 (469)
T ss_dssp             GGTSC
T ss_pred             hhhcc
Confidence            99998

>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}

Probab=99.50  E-value=4.9e-14  Score=104.73  Aligned_cols=80  Identities=20%  Similarity=0.217  Sum_probs=71.2

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|++.++++++|+|.++++++|||||+.+++++.++|++++++| ++ +||..+ ..|+|+.|||+.+  .++.
T Consensus       807 ~d~f~~~L~~~~~~l~vGdp~d~~t~~Gpli~~~~~~rv~~~i~~a~~~g-~v-~gg~~~-~~G~fv~PTvl~~--~~~~  881 (1001)
T 3haz_A          807 ADRMIEMVAGAARELKIGDPSDVATHVGPVIDVEAKQRLDAHIARMKTEA-RL-HFAGPA-PEGCFVAPHIFEL--TEAG  881 (1001)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHHS-EE-EEECCC-CSSSCCCCEEEEC--SSGG
T ss_pred             HHHHHHHHHHHHHhcCCCCcccccCccCCCCCHHHHHHHHHHHHHHHhcC-eE-eccccC-CCCcEEeeEEecC--CCHH
Confidence            47888999999999999999999999999999999999999999999887 78 877654 4699999999975  5788


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       882 ~~~eE  886 (1001)
T 3haz_A          882 QLTEE  886 (1001)
T ss_dssp             GCCSC
T ss_pred             HHhcc
Confidence            89887

>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*

Probab=99.49  E-value=5.2e-14  Score=97.35  Aligned_cols=76  Identities=16%  Similarity=0.126  Sum_probs=66.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.++|++.+++++   |.++  ++|||||++|++|+.++++++   ++++++||..+ ..|+|++|||+.+++++|+
T Consensus       283 ~d~f~~~l~~~~~~~~---p~~~--~~gpli~~~~~~rv~~~i~~a---~~~~~~gg~~~-~~g~~~~Ptvl~~v~~~~~  353 (457)
T 3lns_A          283 KDALLERLVERVKTEL---PEIN--STGKLVTERQVQRLVSLLEAT---QGQVLVGSQAD-VSKRALSATVVDGVEWNDP  353 (457)
T ss_dssp             HHHHHHHHHHHHHHHC---CSTT--TTCCCSSHHHHHHHHHHHHHC---CSEEEECCCEE-GGGTEECCEEEESCCTTSG
T ss_pred             HHHHHHHHHHHHHhcC---CCcc--cccCCCCHHHHHHHHHHHHhc---CCeEEeCCccC-CCCceeCCEEEecCCCCCh
Confidence            5788999999999887   4554  899999999999999999975   36899998764 4689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       354 i~~eE  358 (457)
T 3lns_A          354 LMSEE  358 (457)
T ss_dssp             GGSSC
T ss_pred             hhcCc
Confidence            99998

>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}

Probab=99.03  E-value=1.2e-10  Score=81.84  Aligned_cols=73  Identities=14%  Similarity=0.064  Sum_probs=61.9

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCC--
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDD--   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~--   80 (87)
                      +++|.++|++.+++++.|      +.+||++++.+.+++..+++   ++|+++++||..   .|+|++|||+.+++++  
T Consensus       337 ~d~f~~~l~~~~~~~~~~------~~~gp~~~~~~~~~v~~~~~---~~Ga~v~~gG~~---~g~~~~PTvl~~~~~~~~  404 (528)
T 3v4c_A          337 ADRFTTAAVEALAKVAPQ------TMLTDGIAKAYRDGQARFAT---RNAVKPLLATES---SGRDASPNLFETTGAQFL  404 (528)
T ss_dssp             HHHHHHHHHHHHHTCCCE------ECSCHHHHHHHHHHHHHHHT---CTTCEEEECCCC---CTTEECCEEEEEEHHHHH
T ss_pred             HHHHHHHHHHHHHhcccC------CCCCHHHHHHHHHHHHHHHH---hCCCEEEeCCCc---CCceeccEEEEecCcccc
Confidence            578888888888888643      57999999999998888864   479999999974   6899999999988877  


Q ss_pred             -CcchhcC
Q psy5845          81 -MKIAREE   87 (87)
Q Consensus        81 -~~i~~eE   87 (87)
                       |.+++||
T Consensus       405 ~~~i~~eE  412 (528)
T 3v4c_A          405 ADHALGEE  412 (528)
T ss_dssp             HCGGGGCC
T ss_pred             cChhhccc
Confidence             8999998

>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*

Probab=99.00  E-value=5.4e-10  Score=78.23  Aligned_cols=71  Identities=11%  Similarity=0.066  Sum_probs=60.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHH-HCCCeEEeCCcccCCCCceEeeEEEeeCCCC-
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGK-SQGAQLVAGGGRAGDKGFYVQPTVFANVRDD-   80 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~-~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~-   80 (87)
                      +++|.++|++.++++++          ||+++..+.+++.+++++++ .+|+++++||.    .|+|++|||+.+++++ 
T Consensus       303 ~d~f~~~l~~~~~~~~~----------gp~~~~~~~~~~~~~v~~~~~~~Ga~~~~gg~----~g~~~~Ptvl~~~~~~~  368 (510)
T 1ez0_A          303 TQAFIETAQSLIRQQSP----------STLLTPGIRDSYQSQVVSRGSDDGIDVTFSQA----ESPCVASALFVTSSENW  368 (510)
T ss_dssp             HHHHHHHHHHHHHHCCC----------BCCSSHHHHHHHHHHHHHHHTSTTEEEEECCC----CTTSBCCEEEEEEHHHH
T ss_pred             HHHHHHHHHHHHHhcCC----------CCCCCHHHHHHHHHHHHHHHhcCCCEEEecCC----CCCEecCEEEEecCCcc
Confidence            57788888888888763          57888889999999999988 47999999986    2899999999988777 


Q ss_pred             --CcchhcC
Q psy5845          81 --MKIAREE   87 (87)
Q Consensus        81 --~~i~~eE   87 (87)
                        +.+++||
T Consensus       369 ~~~~i~~eE  377 (510)
T 1ez0_A          369 RKHPAWEEE  377 (510)
T ss_dssp             HHCGGGGSC
T ss_pred             ccCHHHcCC
Confidence              9999998

>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}

Probab=98.27  E-value=5.8e-08  Score=67.29  Aligned_cols=58  Identities=7%  Similarity=0.005  Sum_probs=47.6

Q ss_pred             hhHHHHHHHHhh-------ccccccCCC-CCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCc
Q psy5845           3 WTSAAVFTKDLD-------KTNYVTQGL-RAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG   60 (87)
Q Consensus         3 ~~~~~~~l~~~~-------~~~~~g~~~-~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~   60 (87)
                      |++|.++|++..       +.+++|++. ++++++||+++.++++++.++++.++.+|+++++||.
T Consensus       264 ~d~f~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~gp~i~~~~~~~i~~~~~~a~~~ga~vl~gg~  329 (464)
T 3k9d_A          264 KEAVIAEFRKQGAHFLSDAEAVQLGKFILRPNGSMNPAIVGKSVQHIANLAGLTVPADARVLIAEE  329 (464)
T ss_dssp             HHHHHHHHHHTTEEECCHHHHHHHHHHHBCTTSCBCGGGTTCCHHHHHHHTTCCCCTTCCEEEEEC
T ss_pred             HHHHHHHHHHhhhhhcChhhhhhhcccccCCCCccCcccCHHHHHHHHHHhhhhhcCCCEEEEcCC
Confidence            466777777765       345678765 5678899999999999999999988889999999875

>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}

Probab=98.10  E-value=1.2e-07  Score=65.52  Aligned_cols=57  Identities=19%  Similarity=0.218  Sum_probs=44.9

Q ss_pred             ccccCCHHHHHHHHHHHHHHHHCCCeEEeCCccc---CCCCceEeeEE-------EeeCCCCCcchhc
Q psy5845          29 WGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRA---GDKGFYVQPTV-------FANVRDDMKIARE   86 (87)
Q Consensus        29 ~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~---~~~g~~i~Pti-------i~~v~~~~~i~~e   86 (87)
                      +||++++.+++|+.+++.++...|+++ +||...   ...|+|++||+       +.++++++++++|
T Consensus       270 ~gpli~~~~~~~v~~~i~~~~~~~a~v-~G~~~~~~~~~~G~~v~pt~~vl~~~~~~~v~~~~~~~~E  336 (452)
T 3my7_A          270 KAHVLSKTDADKVRKVLLIDGALNAKI-VGQPATAIAEMAGVKVPADTKVLIGEGLGKVSYDDAFAHE  336 (452)
T ss_dssp             TEEECCHHHHHHHHHHHEETTEECGGG-TTCCHHHHHHHHTCCCCTTCCEEEEECSSSCCTTCGGGSC
T ss_pred             CCCcCCHHHHHHHHHHHHhhcccCCeE-ecCccchhHHhCCceeCCCeeEEeeccccCCCCcchhhcC
Confidence            499999999999999998766667776 466532   12589999997       6688899998874

>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1

Probab=96.33  E-value=0.00014  Score=50.55  Aligned_cols=54  Identities=11%  Similarity=-0.082  Sum_probs=29.8

Q ss_pred             hHHHHHHHHhhccccc---cCCCCCCCCccccCCHHHHHHHHHH-HHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCC
Q psy5845           4 TSAAVFTKDLDKTNYV---TQGLRAGTIWGRKIDKEQMDKILEF-IESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRD   79 (87)
Q Consensus         4 ~~~~~~l~~~~~~~~~---g~~~~~~~~~gpli~~~~~~rv~~~-l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~   79 (87)
                      ++|.++|++.++++++   |+|.+                 .++ ++++.    ++++||.     |  +.||++  ++.
T Consensus       283 d~f~~~l~~~~~~~~v~~~Gdp~~-----------------~~~~i~~a~----~~~~gG~-----g--~~Ptvl--v~~  332 (468)
T 1vlu_A          283 SKWWEVLENLTLEGGVTIHATKDL-----------------KTAYFDKLN----ELGKLTE-----A--IQCKTV--DAD  332 (468)
T ss_dssp             TTHHHHHHHHHHHHCCCBEECHHH-----------------HHHHHHHHH----HHTCCCH-----H--HHTTBC-----
T ss_pred             HHHHHHHHHHHHhcCCeecCCHHH-----------------hcccccccc----eeeccCC-----C--CCCcee--eCC
Confidence            5788899999999886   76532                 344 66654    3566764     4  689887  778


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      ++.+++||
T Consensus       333 ~~~i~~eE  340 (468)
T 1vlu_A          333 EEQDFDKE  340 (468)
T ss_dssp             --------
T ss_pred             CchhhhcC
Confidence            89999998

>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}

Probab=86.00  E-value=0.42  Score=33.10  Aligned_cols=35  Identities=20%  Similarity=0.196  Sum_probs=18.8

Q ss_pred             HHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCcchhcC
Q psy5845          44 FIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMKIAREE   87 (87)
Q Consensus        44 ~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~i~~eE   87 (87)
                      ++++++++|++++.|+... ..++|+        +++|.+++||
T Consensus       301 ~i~~~~~~Ga~v~~G~~~~-~~g~~~--------~~~~~i~~eE  335 (463)
T 2h5g_A          301 IIDMLRVEQVKIHAGPKFA-SYLTFS--------PSEVKSLRTE  335 (463)
T ss_dssp             HHHHHHHTTCEEEECHHHH-C-----------------CCSSCC
T ss_pred             HHHHHHhCCCEEEeCCccc-ccCccC--------CCCchHHhcc
Confidence            5788888999998554322 234443        4678888887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	87
d1o04a_	494	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	7e-20
d1o04a_	494	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	0.003
d1bxsa_	494	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	1e-18
d1uzba_	516	c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogen	2e-15
d1uzba_	516	c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogen	0.004
d1a4sa_	503	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	3e-15
d1wnda_	474	c.82.1.1 (A:) Putative betaine aldehyde dehydrogen	5e-06
d1ad3a_	446	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	2e-04

>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 494

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 79.7 bits (196), Expect = 7e-20
 Identities = 33/73 (45%), Positives = 50/73 (68%)

Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF 74
           K+  V     + T  G ++D+ Q  KIL +I +GK +GA+L+ GGG A D+G+++QPTVF
Sbjct: 321 KSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVF 380

Query: 75  ANVRDDMKIAREE 87
            +V+D M IA+EE
Sbjct: 381 GDVQDGMTIAKEE 393

>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 494

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 32.7 bits (74), Expect = 0.003
 Identities = 18/25 (72%), Positives = 23/25 (92%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           +AAVFTKDLDK NY++Q L+AGT+W
Sbjct: 422 AAAVFTKDLDKANYLSQALQAGTVW 446

>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Sheep (Ovis aries) [TaxId: 9940]} Length = 494

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 75.8 bits (186), Expect = 1e-18
 Identities = 38/70 (54%), Positives = 52/70 (74%)

Query: 18  YVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANV 77
            +   L  G   G +IDKEQ +KIL+ IESGK +GA+L  GGG  G+KG+++QPTVF++V
Sbjct: 324 VLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDV 383

Query: 78  RDDMKIAREE 87
            DDM+IA+EE
Sbjct: 384 TDDMRIAKEE 393

>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 516

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: 1-pyrroline-5-carboxylate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 67.2 bits (163), Expect = 2e-15
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 23  LRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK 82
                  G  +  EQ  K+L +IE GK++G  LV GG R   +G+++ PTVF  V    +
Sbjct: 354 AEENPDLGPVVSAEQERKVLSYIEIGKNEGQ-LVLGGKRLEGEGYFIAPTVFTEVPPKAR 412

Query: 83  IAREE 87
           IA+EE
Sbjct: 413 IAQEE 417

>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 516

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: 1-pyrroline-5-carboxylate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 32.2 bits (72), Expect = 0.004
 Identities = 2/25 (8%), Positives = 11/25 (44%)

Query: 5   SAAVFTKDLDKTNYVTQGLRAGTIW 29
           +  V+++  +   +  +    G ++
Sbjct: 446 TGGVYSRKREHLEWARREFHVGNLY 470

>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Baltic cod (Gadus callarias) [TaxId: 8053]} Length = 503

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Baltic cod (Gadus callarias) [TaxId: 8053]

 Score = 66.7 bits (162), Expect = 3e-15
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 27  TIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG------DKGFYVQPTVFANVRDD 80
           T  G  I K Q+DK+L F+   K +GA+++ GG            G+++ P V  N RDD
Sbjct: 334 TRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDNCRDD 393

Query: 81  MKIAREE 87
           M   +EE
Sbjct: 394 MTCVKEE 400

>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW {Escherichia coli [TaxId: 562]} Length = 474

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Putative betaine aldehyde dehydrogenase YdcW
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 5e-06
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 15  KTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGG-RAGDKGFYVQPTV 73
            T          T  G       ++++ + +E  K+ G   V  GG +    G+Y  PT+
Sbjct: 305 ATLKSGAPDDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTL 364

Query: 74  FANVRDDMKIAREE 87
            A    D  I ++E
Sbjct: 365 LAGALQDDAIVQKE 378

>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 446

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.7 bits (81), Expect = 2e-04
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 56  VAGGGRAGDKGFYVQPTVFANVRDDMKIAREE 87
           VA GG       Y+ PT+  +V     + +EE
Sbjct: 301 VAHGGTWDQSSRYIAPTILVDVDPQSPVMQEE 332

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d1bxsa_	494	Aldehyde reductase (dehydrogenase), ALDH {Sheep (O	99.78
d1o04a_	494	Aldehyde reductase (dehydrogenase), ALDH {Human (H	99.78
d1a4sa_	503	Aldehyde reductase (dehydrogenase), ALDH {Baltic c	99.71
d1wnda_	474	Putative betaine aldehyde dehydrogenase YdcW {Esch	99.64
d1uzba_	516	1-pyrroline-5-carboxylate dehydrogenase {Thermus t	99.64
d1ky8a_	499	Non-phosphorylating glyceraldehyde-3-phosphate deh	99.42
d1ad3a_	446	Aldehyde reductase (dehydrogenase), ALDH {Rat (Rat	99.25
d1euha_	474	Aldehyde reductase (dehydrogenase), ALDH {Streptoc	98.76
d1ez0a_	504	Aldehyde reductase (dehydrogenase), ALDH {Vibrio h	97.05

>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Sheep (Ovis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=99.78  E-value=3.6e-19  Score=122.19  Aligned_cols=85  Identities=46%  Similarity=0.751  Sum_probs=80.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |++|.++|++.++++++|+|.++++++|||||+++++|+.+++++|+++|+++++||......|+|++|||+.++++++.
T Consensus       309 ~d~f~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~~~~gg~~~~~~g~~~~Ptvl~~~~~~~~  388 (494)
T d1bxsa_         309 YDEFVRRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGKKEGAKLECGGGPWGNKGYFIQPTVFSDVTDDMR  388 (494)
T ss_dssp             HHHHHHHHHHHHTCCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCSEECSSSCEECCEEEESCCTTSH
T ss_pred             hHHHHHHHHhhhhheeeeccCCCCCcCCCcCCHHHHHHHHHHHHHHHHcCCEEEeCCCccCCCceeEcCEEEeCCCCCcH
Confidence            57889999999999999999999999999999999999999999999999999999876656799999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       389 ~~~~E  393 (494)
T d1bxsa_         389 IAKEE  393 (494)
T ss_dssp             HHHSC
T ss_pred             HHhcc
Confidence            99998

>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.78  E-value=4.7e-19  Score=121.68  Aligned_cols=85  Identities=39%  Similarity=0.680  Sum_probs=79.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |+++.++|++.++++++|+|.+.++++|||||+.+++|+.+++++++++|+++++||......|+|++||||.+++++++
T Consensus       309 ~d~f~~~l~~~~~~~~~g~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~vl~gg~~~~~~g~~~~Ptvl~~~~~~~~  388 (494)
T d1o04a_         309 YDEFVERSVARAKSRVVGNPFDSKTEQGPQVDETQFKKILGYINTGKQEGAKLLCGGGIAADRGYFIQPTVFGDVQDGMT  388 (494)
T ss_dssp             HHHHHHHHHHHHHHCCBCCTTSTTCSBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCCSSSSCBCCEEEESCCTTSH
T ss_pred             hHHHHHHHHHHhhheeecCcccccCccCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCcCCCCCceEcCEEEeCCCCCCH
Confidence            57888999999999999999999999999999999999999999999999999999987656789999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       389 ~~~eE  393 (494)
T d1o04a_         389 IAKEE  393 (494)
T ss_dssp             HHHSC
T ss_pred             HHhcc
Confidence            99998

>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Baltic cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Baltic cod (Gadus callarias) [TaxId: 8053]

Probab=99.71  E-value=2.7e-17  Score=113.12  Aligned_cols=85  Identities=32%  Similarity=0.480  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccC------CCCceEeeEEEee
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAG------DKGFYVQPTVFAN   76 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~------~~g~~i~Ptii~~   76 (87)
                      |+++..++.+.++++++|+|.+..+++||++++.+++|+.+++++++++|+++++||....      ..|+|++||||.+
T Consensus       310 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gp~i~~~~~~~~~~~~~~a~~~Ga~v~~gg~~~~~~~~~~~~G~~~~Ptvl~~  389 (503)
T d1a4sa_         310 MPQFLEEVVKRTKAIVVGDPLLTETRMGGLISKPQLDKVLGFVAQAKKEGARVLCGGEPLTPSDPKLKNGYFMSPCVLDN  389 (503)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHHTCEEEECCSBCCCSSGGGTTSCCBCCEEEES
T ss_pred             hhhHHHHHHHhhhhEeeccccccccccccccCHHHHHHHHHHHHHHHHcCCEEEECCcccCCCCcccCCceEEcCEEEeC
Confidence            6788999999999999999999999999999999999999999999999999999986421      4689999999999


Q ss_pred             CCCCCcchhcC
Q psy5845          77 VRDDMKIAREE   87 (87)
Q Consensus        77 v~~~~~i~~eE   87 (87)
                      ++++++++++|
T Consensus       390 ~~~~~~~~~~E  400 (503)
T d1a4sa_         390 CRDDMTCVKEE  400 (503)
T ss_dssp             CCTTSHHHHSC
T ss_pred             CCCCCHHHhcc
Confidence            99999999998

>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Putative betaine aldehyde dehydrogenase YdcW
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=5.8e-16  Score=105.63  Aligned_cols=85  Identities=19%  Similarity=0.271  Sum_probs=77.0

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCe-EEeCCcccCCCCceEeeEEEeeCCCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQ-LVAGGGRAGDKGFYVQPTVFANVRDDM   81 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~-i~~gg~~~~~~g~~i~Ptii~~v~~~~   81 (87)
                      |++|.++|++.++++++|++.+.++.+||++++.+++++..++++++..|+. ++.|+......|+|+.|||+.++++++
T Consensus       293 ~d~~~~~l~~~~~~l~~G~~~~~~~~~Gpli~~~~~~~~~~~i~~a~~~ga~~v~~G~~~~~~~g~~~~Ptil~~~~~~~  372 (474)
T d1wnda_         293 YDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKAVEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDD  372 (474)
T ss_dssp             HHHHHHHHHHHHHTCCBCCTTSTTCCBCCCSCHHHHHHHHHHHHHHHHTSSCEEEECCSBCSSSSCCBCCEEEECCCTTS
T ss_pred             chhhhhhhHHHHHhhccCCcCCCCceecccccccccchHHHHHHHHHHCCCeEEEeCCcccCCCceEEeeeEeecccccc
Confidence            6889999999999999999999999999999999999999999999999985 555665554678999999999999999


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      .+++||
T Consensus       373 ~~~~eE  378 (474)
T d1wnda_         373 AIVQKE  378 (474)
T ss_dssp             HHHHSC
T ss_pred             cceeec
Confidence            999998

>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: 1-pyrroline-5-carboxylate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=2.9e-16  Score=108.16  Aligned_cols=83  Identities=29%  Similarity=0.458  Sum_probs=72.7

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |+++.+++++.++++++| |.+.++++||+|+..+++++.+++++++++|+.+ +||...+.+|+|++||||.++++++.
T Consensus       335 ~d~~~~~~~~~~~~l~~g-~~~~~~~~gpli~~~~~~~~~~~i~~a~~~Ga~v-~~g~~~~~~g~~~~Ptvl~~v~~~~~  412 (516)
T d1uzba_         335 YEPVLERVLKRAERLSVG-PAEENPDLGPVVSAEQERKVLSYIEIGKNEGQLV-LGGKRLEGEGYFIAPTVFTEVPPKAR  412 (516)
T ss_dssp             HHHHHHHHHHHHTTCCBS-CGGGCCSBCCCSCHHHHHHHHHHHHHHTTTSEEE-ECCSBCSSSSCCBCCEEEESCCTTSG
T ss_pred             ccchhhHHHHHHHhcccC-CCcccCccccccCHHHHHHHHHHHHHHHHCCCEE-ECCCcCCCCCceECCEEEecCCCCch
Confidence            578888999999999999 5677889999999999999999999999888765 55554446799999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      ++++|
T Consensus       413 ~~~eE  417 (516)
T d1uzba_         413 IAQEE  417 (516)
T ss_dssp             GGTSC
T ss_pred             hhcCC
Confidence            99998

>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=99.42  E-value=4.1e-13  Score=91.83  Aligned_cols=83  Identities=24%  Similarity=0.292  Sum_probs=70.8

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEE---eeCCC
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVF---ANVRD   79 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii---~~v~~   79 (87)
                      |++|.++|++.++++++|+|.+.++++||+++..+++++++++++|+.+|++++.||...  ...++.++++   .++..
T Consensus       308 ~d~f~~~l~~~~~~l~~G~p~~~~~~~gpli~~~~~~~~~~~i~~a~~~ga~v~~~~~~~--~~~~~~~~~~~~~~~~~~  385 (499)
T d1ky8a_         308 YGKLVEEVAKRLSSLRVGDPRDPTVDVGPLISPSAVDEMMAAIEDAVEKGGRVLAGGRRL--GPTYVQPTLVEAPADRVK  385 (499)
T ss_dssp             HHHHHHHHHHHHHTCCBSCTTSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCCEE--ETTEECCEEEECCHHHHT
T ss_pred             HHHHHHHHHHHHHhCccCCCCCccccccccchHHHHHHHHHHHHHHHHcCCEEeeeeccc--cccccccccccccccCCC
Confidence            689999999999999999999999999999999999999999999999999999998765  2334444444   34567


Q ss_pred             CCcchhcC
Q psy5845          80 DMKIAREE   87 (87)
Q Consensus        80 ~~~i~~eE   87 (87)
                      ++.++++|
T Consensus       386 d~~~~~eE  393 (499)
T d1ky8a_         386 DMVLYKRE  393 (499)
T ss_dssp             TSHHHHSC
T ss_pred             CChhhhcc
Confidence            89999987

>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=5.6e-12  Score=85.23  Aligned_cols=78  Identities=18%  Similarity=0.317  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      +++|.+++++.++.+ +|++.+.++.+||++|+.+++++..++++     ++...|+... ..++|+.|||+.+++++|+
T Consensus       255 ~~~f~~~l~~~~~~~-~g~~~~~~~~~gp~i~~~~~~~~~~~~~~-----a~~~~g~~~~-~~~~~~~Ptil~~v~~~~~  327 (446)
T d1ad3a_         255 QNQIVEKLKKSLKDF-YGEDAKQSRDYGRIINDRHFQRVKGLIDN-----QKVAHGGTWD-QSSRYIAPTILVDVDPQSP  327 (446)
T ss_dssp             HHHHHHHHHHHHHHH-HCSCGGGCTTSCCCSCHHHHHHHHHTTTT-----SCEEECCCEE-TTTTEECCEEECSCCTTSG
T ss_pred             hHHHHHhhhhhhhee-ecccccccccccchhhhhhhhhhhccccc-----hhcccceeec-CCCCCcCCEEEECCCCCCH
Confidence            577888888888887 79998899999999999999999888753     4455555444 5688999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       328 ~~~eE  332 (446)
T d1ad3a_         328 VMQEE  332 (446)
T ss_dssp             GGTSC
T ss_pred             HHhCc
Confidence            99998

>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Streptococcus mutans [TaxId: 1309]

Probab=98.76  E-value=2.1e-08  Score=67.55  Aligned_cols=81  Identities=19%  Similarity=0.189  Sum_probs=69.1

Q ss_pred             hhHHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEeeCCCCCc
Q psy5845           3 WTSAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFANVRDDMK   82 (87)
Q Consensus         3 ~~~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~~v~~~~~   82 (87)
                      |+++...++.....++.|++.+. ..++++++..+++++...+..+...++..+.++.   ..|+|+.|||+.+++++++
T Consensus       296 ~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~Ptvl~~~~~~~~  371 (474)
T d1euha_         296 ADELVEKIREKVLALTIGNPEDD-ADITPLIDTKSADYVEGLINDANDKGATALTEIK---REGNLICPILFDKVTTDMR  371 (474)
T ss_dssp             HHHHHHHHHHHHHTSCBSCGGGT-CSBCCCSCHHHHHHHHHHHHHHHHTTCEECSCCC---EETTEECCEEEESCCTTSG
T ss_pred             hhhhhHhhhhhhhhccccCcccc-cccccccchHHHHHHHHHHHhhhcccccccccCC---CCCCCcCCEEEecCCCcch
Confidence            47788888888888888887654 4689999999999999999999888887765443   3689999999999999999


Q ss_pred             chhcC
Q psy5845          83 IAREE   87 (87)
Q Consensus        83 i~~eE   87 (87)
                      +++||
T Consensus       372 ~~~eE  376 (474)
T d1euha_         372 LAWEE  376 (474)
T ss_dssp             GGTSC
T ss_pred             hhhcc
Confidence            99997

>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Vibrio harveyi [TaxId: 669]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Vibrio harveyi [TaxId: 669]

Probab=97.05  E-value=9.7e-05  Score=49.95  Aligned_cols=74  Identities=11%  Similarity=0.110  Sum_probs=46.1

Q ss_pred             HHHHHHHHhhccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHCCCeEEeCCcccCCCCceEeeEEEe---eCCCCC
Q psy5845           5 SAAVFTKDLDKTNYVTQGLRAGTIWGRKIDKEQMDKILEFIESGKSQGAQLVAGGGRAGDKGFYVQPTVFA---NVRDDM   81 (87)
Q Consensus         5 ~~~~~l~~~~~~~~~g~~~~~~~~~gpli~~~~~~rv~~~l~~a~~~Ga~i~~gg~~~~~~g~~i~Ptii~---~v~~~~   81 (87)
                      .+...+.+.++++..+  .++++.+||+|+..+++++   ++.+...|+.+..|+..    +.+..|+++.   ++..++
T Consensus       297 ~~~~~~~~~~~~~~~~--~~~~~~~gp~i~~~~~~~v---i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  367 (504)
T d1ez0a_         297 PETQAFIETAQSLIRQ--QSPSTLLTPGIRDSYQSQV---VSRGSDDGIDVTFSQAE----SPCVASALFVTSSENWRKH  367 (504)
T ss_dssp             HHHHHHHHHHHHHHHH--CCCBCCSSHHHHHHHHHHH---HHHHTSTTEEEEECCCC----TTSBCCEEEEEEHHHHHHC
T ss_pred             hhHHHHhhhhhhhhhh--cccccccccchhhhhhhhh---hhhhhhhhhhccccccc----ccccCCccccccccccccc
Confidence            3444555555443222  2346789999999999887   55566778888877653    2334444443   334567


Q ss_pred             cchhcC
Q psy5845          82 KIAREE   87 (87)
Q Consensus        82 ~i~~eE   87 (87)
                      ++++||
T Consensus       368 ~~~~eE  373 (504)
T d1ez0a_         368 PAWEEE  373 (504)
T ss_dssp             GGGGSC
T ss_pred             hhhccc
Confidence            899987