Psyllid ID: psy5848
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1753 | 2.2.26 [Sep-21-2011] | |||||||
| Q24212 | 1262 | Protein stoned-B OS=Droso | yes | N/A | 0.414 | 0.576 | 0.660 | 0.0 | |
| P90761 | 1693 | Putative stoned B-like pr | yes | N/A | 0.278 | 0.288 | 0.450 | 1e-133 | |
| Q8BZ60 | 895 | Stonin-2 OS=Mus musculus | yes | N/A | 0.255 | 0.500 | 0.327 | 4e-73 | |
| Q8WXE9 | 905 | Stonin-2 OS=Homo sapiens | yes | N/A | 0.250 | 0.486 | 0.318 | 2e-69 | |
| Q9Y6Q2 | 735 | Stonin-1 OS=Homo sapiens | no | N/A | 0.254 | 0.608 | 0.293 | 1e-50 | |
| Q8CDJ8 | 730 | Stonin-1 OS=Mus musculus | no | N/A | 0.248 | 0.595 | 0.284 | 5e-47 | |
| P54672 | 439 | AP-2 complex subunit mu O | yes | N/A | 0.150 | 0.601 | 0.242 | 8e-11 | |
| Q3SYW1 | 423 | AP-1 complex subunit mu-2 | no | N/A | 0.061 | 0.255 | 0.355 | 7e-10 | |
| Q9Y6Q5 | 423 | AP-1 complex subunit mu-2 | no | N/A | 0.061 | 0.255 | 0.355 | 7e-10 | |
| Q9WVP1 | 423 | AP-1 complex subunit mu-2 | no | N/A | 0.061 | 0.255 | 0.355 | 7e-10 |
| >sp|Q24212|STNB_DROME Protein stoned-B OS=Drosophila melanogaster GN=stnB PE=1 SV=4 | Back alignment and function desciption |
|---|
Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/761 (66%), Positives = 568/761 (74%), Gaps = 34/761 (4%)
Query: 1006 DTLFSQPPTEPQKENVFAQNDDLFDAFSAKFESVKINEEKSSAFDPFGGTSAF----GDA 1061
D+ P N+FA + D FDAFSAKF+SVK ++ S D FGG+ A GDA
Sbjct: 522 DSQMETPKAPSHTANIFASDPDEFDAFSAKFDSVK--KDNISIMDGFGGSGAITPTGGDA 579
Query: 1062 GTLSSEQPSDVEGFGTDDGFDAFLAMGPPPTPQCTPTPTPAKQRKTSADSDE--DSDFNV 1119
S+ + + D A A Q ADS E D DF+V
Sbjct: 580 WGGSAFGSTTISANACGDTNSADDGF------GNDDDDFYAMQAPARADSVESVDKDFSV 633
Query: 1120 FIRPQNFENNLQPNTALVPPSLAPPPKSPAVPASQDSSP---RFNPFDKGDVFAAPKENI 1176
IRP E + + P PPP + V +Q +S NPF+ F AP
Sbjct: 634 VIRPMAEET-----SGVAPQLAPPPPPARGVNQAQTTSLPGLTVNPFEDVSGFPAPG--- 685
Query: 1177 FTQPDELNLTMQRTDSQETPPTPLFDEDVSQPLEDFPRIKYDGPGWEMHLRQPNKKKITG 1236
P ++RTDSQ+TP TPL+DEDVSQPLE+FPR+ Y GPGWEM LRQPNKKKITG
Sbjct: 686 --LPPTDGTAIKRTDSQDTPQTPLYDEDVSQPLEEFPRLHYIGPGWEMQLRQPNKKKITG 743
Query: 1237 QRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSEIGAQQYDNFGKIFTV 1296
QRFWKK+ V++V + PVV L N+A DK PFQELPL+P YSVSEIGAQQYD FGKIFT+
Sbjct: 744 QRFWKKIVVRLVVQNDVPVVQLLNQAGDKQPFQELPLQPSYSVSEIGAQQYDQFGKIFTM 803
Query: 1297 KLQFIFYKERPGVRPGQVTKAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHA 1356
KLQ+IFYKERPGVRPGQVTKAERITNKL++FA YAI GDY+GVKEFGSDL+KLGLPVEHA
Sbjct: 804 KLQYIFYKERPGVRPGQVTKAERITNKLTKFAQYAIAGDYEGVKEFGSDLKKLGLPVEHA 863
Query: 1357 PQTSQLFKIGSHSYEAMKQFTVCIEEALFKLPVHRDRALTYKMEEVQITTVDEIYVEQNE 1416
PQ+SQLFKIGS +YE MKQF+VCIEEALFK+P R+RALTYKMEEVQ+T VDEI VEQ+
Sbjct: 864 PQSSQLFKIGSMNYEDMKQFSVCIEEALFKIPALRERALTYKMEEVQVTAVDEITVEQDF 923
Query: 1417 TGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLEGVE 1476
G ILKQIARVRLFFL FL+GMP IELGVND+ RQGKEVVGRHDIIPV TEEWIRLE VE
Sbjct: 924 EGKILKQIARVRLFFLAFLTGMPTIELGVNDMWRQGKEVVGRHDIIPVATEEWIRLEAVE 983
Query: 1477 FHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCVTGNKVELRA 1536
FHS V Q EYE+ RTIKF+PPDA YIEL+RFRVRPP+NRELPLQLKA CV+GNKVELRA
Sbjct: 984 FHSVVNQKEYERTRTIKFQPPDANYIELLRFRVRPPKNRELPLQLKATWCVSGNKVELRA 1043
Query: 1537 DILVPGFVSRKLGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIER 1596
DILVPGF SRKLGQIPCED+ VRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGK+KGIER
Sbjct: 1044 DILVPGFTSRKLGQIPCEDVSVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKIKGIER 1103
Query: 1597 FLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQ 1656
LGAVD L+ L+EVTSGQ+KYEH HR+IVWR PRLPKEGQG+YTTH LVCRMALTSYDQ
Sbjct: 1104 ILGAVDTLQESLIEVTSGQAKYEHHHRAIVWRCPRLPKEGQGAYTTHQLVCRMALTSYDQ 1163
Query: 1657 IPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNSDSDVPPEKYVRHLARHEYRVGIEH 1716
IP +L YA+VEFTMPATQVSHTTVRSVS+ +SD D PPEKYVR+LARHEY+VGIE
Sbjct: 1164 IPSEL---APYAFVEFTMPATQVSHTTVRSVSVQDSDGDEPPEKYVRYLARHEYKVGIET 1220
Query: 1717 TQGEGPGDYIAAT--IKSTPPPIMETPI--PQADSDSDSSS 1753
T GE Y+AAT I+ PP P P A SDSD+ S
Sbjct: 1221 THGESTNAYLAATRPIREEPPTTATKPTASPVAPSDSDTDS 1261
|
Adapter protein involved in endocytic recycling of synaptic vesicles membranes. May act by mediating the retrieval of synaptotagmin protein Syt from the plasma membrane, thereby facilitating the internalization of multiple synaptic vesicles from the plasma membrane. Drosophila melanogaster (taxid: 7227) |
| >sp|P90761|STNB_CAEEL Putative stoned B-like protein OS=Caenorhabditis elegans GN=unc-41 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q8BZ60|STON2_MOUSE Stonin-2 OS=Mus musculus GN=Ston2 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q8WXE9|STON2_HUMAN Stonin-2 OS=Homo sapiens GN=STON2 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9Y6Q2|STON1_HUMAN Stonin-1 OS=Homo sapiens GN=STON1 PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q8CDJ8|STON1_MOUSE Stonin-1 OS=Mus musculus GN=Ston1 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|P54672|AP2M_DICDI AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q3SYW1|AP1M2_BOVIN AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3 | Back alignment and function description |
|---|
| >sp|Q9Y6Q5|AP1M2_HUMAN AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4 | Back alignment and function description |
|---|
| >sp|Q9WVP1|AP1M2_MOUSE AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1753 | ||||||
| 307180164 | 1204 | Protein stoned-B [Camponotus floridanus] | 0.403 | 0.587 | 0.737 | 0.0 | |
| 350406533 | 1216 | PREDICTED: protein stoned-B-like [Bombus | 0.406 | 0.585 | 0.721 | 0.0 | |
| 307207125 | 1223 | Protein stoned-B [Harpegnathos saltator] | 0.404 | 0.579 | 0.727 | 0.0 | |
| 340721471 | 1216 | PREDICTED: protein stoned-B-like [Bombus | 0.406 | 0.585 | 0.721 | 0.0 | |
| 156552371 | 1173 | PREDICTED: protein stoned-B [Nasonia vit | 0.441 | 0.659 | 0.673 | 0.0 | |
| 383864629 | 2070 | PREDICTED: uncharacterized protein LOC10 | 0.402 | 0.341 | 0.713 | 0.0 | |
| 157123344 | 1244 | clathrin coat assembly protein [Aedes ae | 0.398 | 0.561 | 0.692 | 0.0 | |
| 189236035 | 1057 | PREDICTED: similar to clathrin coat asse | 0.458 | 0.759 | 0.639 | 0.0 | |
| 270005660 | 1037 | hypothetical protein TcasGA2_TC007752 [T | 0.458 | 0.774 | 0.639 | 0.0 | |
| 347963682 | 1379 | AGAP000363-PA [Anopheles gambiae str. PE | 0.403 | 0.512 | 0.683 | 0.0 |
| >gi|307180164|gb|EFN68198.1| Protein stoned-B [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 1117 bits (2888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/743 (73%), Positives = 604/743 (81%), Gaps = 36/743 (4%)
Query: 1027 DLFDAFSAKFESVKINEEKSSAFDPF-----GGTSA-------FGDAGTLSSEQPSDVEG 1074
D FDAF++KF+ K E + + DPF GG +A +GD+ SE + V G
Sbjct: 480 DSFDAFASKFD--KAAEPEINGGDPFLDAFGGGPTAMDTSSDVWGDSSVAGSE--TAVTG 535
Query: 1075 FGTDDGFDAFLAMGPPPTPQCTPTPTPAKQRKTSADSDEDSDFNVFIRPQNFENNLQPNT 1134
FG DGFD+FL+M PP P +R SA+SDE DF+VFI+P+ + +
Sbjct: 536 FGESDGFDSFLSMTAPP-------PDTKVKRAESAESDEGPDFSVFIKPKEGDQMAMTES 588
Query: 1135 ALVPPSLAPPPKSPAVPASQDSSPRFNPFDKGDVFAAPKENIFTQPDELNLTMQRTDSQE 1194
VP +LAPPPKSP V A DSSPRFNPFDK + + Q E M RTDSQE
Sbjct: 589 GPVP-TLAPPPKSPQVVAYTDSSPRFNPFDKSGIAQDAAVSETAQTAE----MARTDSQE 643
Query: 1195 TPPTPLFDEDVSQPLEDFPRIKYDGPGWEMHLRQPNKKKITGQRFWKKVFVKIVYHGEKP 1254
TPPTPLFDEDVSQPLEDFPR+ Y G GWEM LRQPNKKKITGQRFWKK+FVK+VY + P
Sbjct: 644 TPPTPLFDEDVSQPLEDFPRVTYIGDGWEMQLRQPNKKKITGQRFWKKIFVKLVYQADSP 703
Query: 1255 VVHLYNKADDKDPFQELPLEPCYSVSEIGAQQYDNFGKIFTVKLQFIFYKERPGVRPGQV 1314
++ L+N DDKDPFQELPL CYSVS+IGAQQ+D +GKIFTVKLQ+IFYKERPGVRPGQV
Sbjct: 704 ILQLFNNKDDKDPFQELPLLTCYSVSDIGAQQFDQYGKIFTVKLQYIFYKERPGVRPGQV 763
Query: 1315 TKAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHAPQTSQLFKIGSHSYEAMK 1374
TKAERITNKLSQFAAYAIQGDYQGVKEFGSDL+KLGLPVEHAPQ SQLFK+GS YE MK
Sbjct: 764 TKAERITNKLSQFAAYAIQGDYQGVKEFGSDLKKLGLPVEHAPQISQLFKLGSQCYEDMK 823
Query: 1375 QFTVCIEEALFKLPVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGF 1434
QF+ IEEALF+LP RDRAL YKMEEVQIT VDE+YVEQ+ G + KQIARVRLFFLGF
Sbjct: 824 QFSCAIEEALFRLPAIRDRALNYKMEEVQITVVDELYVEQSSEGHVDKQIARVRLFFLGF 883
Query: 1435 LSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKF 1494
LSGMPDIELG+ND+ RQGKEVVGRHDIIPVVTEEWIRLE VEFHSCVQQDEYEK R IKF
Sbjct: 884 LSGMPDIELGINDMWRQGKEVVGRHDIIPVVTEEWIRLENVEFHSCVQQDEYEKSRIIKF 943
Query: 1495 KPPDACYIELMRFRVRPPRNRELPLQLKAVMCVTGNKVELRADILVPGFVSRKLGQIPCE 1554
KPPDACYIELMRFRVRPP+NRELPLQLKAVMCVTGNKVELRADILVPGF SRKLGQIPCE
Sbjct: 944 KPPDACYIELMRFRVRPPKNRELPLQLKAVMCVTGNKVELRADILVPGFASRKLGQIPCE 1003
Query: 1555 DIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSG 1614
D+MVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGK+KGIERFLGAVD LEPQLMEVTSG
Sbjct: 1004 DVMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKIKGIERFLGAVDTLEPQLMEVTSG 1063
Query: 1615 QSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTM 1674
Q+KYEHQHR+IVWRMPRLPKEGQG+YTTH LVCRMALTSYDQIP++L +Y YVEFTM
Sbjct: 1064 QAKYEHQHRAIVWRMPRLPKEGQGAYTTHQLVCRMALTSYDQIPENL---SEYCYVEFTM 1120
Query: 1675 PATQVSHTTVRSVSISNSDSDVPPEKYVRHLARHEYRVGIEHTQGEGPGDYIAATI---- 1730
PATQVSHTT RSVS+ NSDSD PPEKYVR+L+RHEYRVGIEHTQGEGPG Y+AATI
Sbjct: 1121 PATQVSHTTARSVSLQNSDSDSPPEKYVRNLSRHEYRVGIEHTQGEGPGAYVAATIAKKI 1180
Query: 1731 -KSTPPPIMETPIPQADSDSDSS 1752
+STP E A+SDSDSS
Sbjct: 1181 PESTPEAHSEASDAAAESDSDSS 1203
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350406533|ref|XP_003487803.1| PREDICTED: protein stoned-B-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|307207125|gb|EFN84934.1| Protein stoned-B [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
| >gi|340721471|ref|XP_003399143.1| PREDICTED: protein stoned-B-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
| >gi|156552371|ref|XP_001602404.1| PREDICTED: protein stoned-B [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
| >gi|383864629|ref|XP_003707780.1| PREDICTED: uncharacterized protein LOC100882936 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|157123344|ref|XP_001660126.1| clathrin coat assembly protein [Aedes aegypti] gi|108884519|gb|EAT48744.1| AAEL000239-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
| >gi|189236035|ref|XP_968279.2| PREDICTED: similar to clathrin coat assembly protein, partial [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
| >gi|270005660|gb|EFA02108.1| hypothetical protein TcasGA2_TC007752 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
| >gi|347963682|ref|XP_310748.5| AGAP000363-PA [Anopheles gambiae str. PEST] gi|333467083|gb|EAA06689.5| AGAP000363-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1753 | ||||||
| FB|FBgn0016975 | 1262 | stnB "stoned B" [Drosophila me | 0.488 | 0.679 | 0.588 | 7.1e-268 | |
| WB|WBGene00006777 | 1693 | unc-41 [Caenorhabditis elegans | 0.224 | 0.232 | 0.455 | 1.2e-116 | |
| MGI|MGI:1918272 | 895 | Ston2 "stonin 2" [Mus musculus | 0.203 | 0.397 | 0.358 | 5.2e-66 | |
| RGD|1311502 | 895 | Ston2 "stonin 2" [Rattus norve | 0.203 | 0.397 | 0.358 | 1.3e-64 | |
| UNIPROTKB|F1SE00 | 894 | LOC100157426 "Uncharacterized | 0.202 | 0.397 | 0.357 | 4.9e-63 | |
| UNIPROTKB|E1C840 | 896 | STON2 "Uncharacterized protein | 0.203 | 0.397 | 0.336 | 1.5e-61 | |
| UNIPROTKB|E2RR53 | 894 | STON2 "Uncharacterized protein | 0.203 | 0.399 | 0.351 | 4.2e-61 | |
| UNIPROTKB|Q8WXE9 | 905 | STON2 "Stonin-2" [Homo sapiens | 0.198 | 0.384 | 0.347 | 1.3e-60 | |
| UNIPROTKB|E1BNH3 | 919 | STON2 "Uncharacterized protein | 0.196 | 0.375 | 0.354 | 4.5e-60 | |
| UNIPROTKB|E1BRM0 | 1194 | STON1 "Uncharacterized protein | 0.205 | 0.302 | 0.319 | 2.6e-47 |
| FB|FBgn0016975 stnB "stoned B" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2466 (873.1 bits), Expect = 7.1e-268, Sum P(2) = 7.1e-268
Identities = 530/901 (58%), Positives = 616/901 (68%)
Query: 877 IQNAINSRKS-SQDVVTSRKSSQDIQRITSASQSRKASNEVAPDVFSQQITSTNI-IENY 934
++ +N+ + S T R ++ DI+ IT+ ++ +E P+ + T T IE
Sbjct: 381 LERQVNNMAAPSGTASTQRATTPDIE-ITTVEDLPRSDDEDEPEAMQEPETETKPQIEPD 439
Query: 935 T-----TDSSPFIE---DHATAVNHEA-TAEPIQHTADQFMNLFGTSIGK--NEPETAFM 983
T ++ SP E A V+ E AEP D ++ S G+ P +
Sbjct: 440 TEPEIVSEHSPPTERLVTQAALVDGELIAAEPEPEEMDTGLDFPLASSGQLSANPFASPD 499
Query: 984 NQDDTFGIQPAATDFPEQTISQDTLFSQPPTEPQKENVFAQNDDLFDAFSAKFESVKINE 1043
++ F PAA D+ P N+FA + D FDAFSAKF+SVK +
Sbjct: 500 EEEPNFAPMPAAVANIFAVNDPDSQMETPKAPSHTANIFASDPDEFDAFSAKFDSVK--K 557
Query: 1044 EKSSAFDPFGGTSAF----GDAGTLSSEQPSDVEGFGTDDGFDAFLAMGXXXXXXXXXXX 1099
+ S D FGG+ A GDA S+ + + D A G
Sbjct: 558 DNISIMDGFGGSGAITPTGGDAWGGSAFGSTTISANACGDTNSADDGFGNDDDDFY---- 613
Query: 1100 XXAKQRKTSADSDE--DSDFNVFIRPQNFENN-LQPNTXXXXXXXXXXXXXXXXXXXQDS 1156
A Q ADS E D DF+V IRP E + + P
Sbjct: 614 --AMQAPARADSVESVDKDFSVVIRPMAEETSGVAPQLAPPPPPARGVNQAQTTSL---P 668
Query: 1157 SPRFNPFDKGDVFAAPKENIFTQPDELNLTMQRTDSQETPPTPLFDEDVSQPLEDFPRIK 1216
NPF+ DV P + P ++RTDSQ+TP TPL+DEDVSQPLE+FPR+
Sbjct: 669 GLTVNPFE--DVSGFPAPGL---PPTDGTAIKRTDSQDTPQTPLYDEDVSQPLEEFPRLH 723
Query: 1217 YDGPGWEMHLRQPNKKKITGQRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPC 1276
Y GPGWEM LRQPNKKKITGQRFWKK+ V++V + PVV L N+A DK PFQELPL+P
Sbjct: 724 YIGPGWEMQLRQPNKKKITGQRFWKKIVVRLVVQNDVPVVQLLNQAGDKQPFQELPLQPS 783
Query: 1277 YSVSEIGAQQYDNFGKIFTVKLQFIFYKERPGVRPGQVTKAERITNKLSQFAAYAIQGDY 1336
YSVSEIGAQQYD FGKIFT+KLQ+IFYKERPGVRPGQVTKAERITNKL++FA YAI GDY
Sbjct: 784 YSVSEIGAQQYDQFGKIFTMKLQYIFYKERPGVRPGQVTKAERITNKLTKFAQYAIAGDY 843
Query: 1337 QGVKEFGSDLRKLGLPVEHAPQTSQLFKIGSHSYEAMKQFTVCIEEALFKLPVHRDRALT 1396
+GVKEFGSDL+KLGLPVEHAPQ+SQLFKIGS +YE MKQF+VCIEEALFK+P R+RALT
Sbjct: 844 EGVKEFGSDLKKLGLPVEHAPQSSQLFKIGSMNYEDMKQFSVCIEEALFKIPALRERALT 903
Query: 1397 YKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVV 1456
YKMEEVQ+T VDEI VEQ+ G ILKQIARVRLFFL FL+GMP IELGVND+ RQGKEVV
Sbjct: 904 YKMEEVQVTAVDEITVEQDFEGKILKQIARVRLFFLAFLTGMPTIELGVNDMWRQGKEVV 963
Query: 1457 GRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRE 1516
GRHDIIPV TEEWIRLE VEFHS V Q EYE+ RTIKF+PPDA YIEL+RFRVRPP+NRE
Sbjct: 964 GRHDIIPVATEEWIRLEAVEFHSVVNQKEYERTRTIKFQPPDANYIELLRFRVRPPKNRE 1023
Query: 1517 LPLQLKAVMCVTGNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIYLFRVEKHF 1576
LPLQLKA CV+GNKVELRADILVPGF SRKLGQIPCED+ VRFPIPECWIYLFRVEKHF
Sbjct: 1024 LPLQLKATWCVSGNKVELRADILVPGFTSRKLGQIPCEDVSVRFPIPECWIYLFRVEKHF 1083
Query: 1577 RYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRLPKEG 1636
RYGSVKSAHRRTGK+KGIER LGAVD L+ L+EVTSGQ+KYEH HR+IVWR PRLPKEG
Sbjct: 1084 RYGSVKSAHRRTGKIKGIERILGAVDTLQESLIEVTSGQAKYEHHHRAIVWRCPRLPKEG 1143
Query: 1637 QGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNSDSDV 1696
QG+YTTH LVCRMALTSYDQIP +L YA+VEFTMPATQVSHTTVRSVS+ +SD D
Sbjct: 1144 QGAYTTHQLVCRMALTSYDQIPSEL---APYAFVEFTMPATQVSHTTVRSVSVQDSDGDE 1200
Query: 1697 PPEKYVRHLARHEYRVGIEHTQGEGPGDYIAAT--IKSTPPPIMETPI--PQADSDSDSS 1752
PPEKYVR+LARHEY+VGIE T GE Y+AAT I+ PP P P A SDSD+
Sbjct: 1201 PPEKYVRYLARHEYKVGIETTHGESTNAYLAATRPIREEPPTTATKPTASPVAPSDSDTD 1260
Query: 1753 S 1753
S
Sbjct: 1261 S 1261
|
|
| WB|WBGene00006777 unc-41 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1918272 Ston2 "stonin 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|1311502 Ston2 "stonin 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SE00 LOC100157426 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C840 STON2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RR53 STON2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8WXE9 STON2 "Stonin-2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BNH3 STON2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BRM0 STON1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q24212 | STNB_DROME | No assigned EC number | 0.6609 | 0.4147 | 0.5760 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1753 | |||
| cd09255 | 308 | cd09255, AP-like_stonins_MHD, Mu homology domain ( | 1e-157 | |
| cd09263 | 314 | cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) | 2e-65 | |
| cd09262 | 309 | cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) | 2e-49 | |
| cd07954 | 239 | cd07954, AP_MHD_Cterm, C-terminal domain of adapto | 9e-20 | |
| pfam00928 | 228 | pfam00928, Adap_comp_sub, Adaptor complexes medium | 2e-19 | |
| cd09251 | 263 | cd09251, AP-2_Mu2_Cterm, C-terminal domain of medi | 3e-16 | |
| cd09253 | 271 | cd09253, AP-4_Mu4_Cterm, C-terminal domain of medi | 5e-15 | |
| cd09259 | 264 | cd09259, AP-1_Mu1B_Cterm, C-terminal domain of med | 1e-11 | |
| cd09250 | 268 | cd09250, AP-1_Mu1_Cterm, C-terminal domain of medi | 2e-09 | |
| cd09258 | 270 | cd09258, AP-1_Mu1A_Cterm, C-terminal domain of med | 2e-09 | |
| pfam00928 | 228 | pfam00928, Adap_comp_sub, Adaptor complexes medium | 1e-08 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 7e-08 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 2e-07 | |
| cd09252 | 248 | cd09252, AP-3_Mu3_Cterm, C-terminal domain of medi | 3e-07 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 9e-07 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-06 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 2e-06 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 2e-06 | |
| PRK14948 | 620 | PRK14948, PRK14948, DNA polymerase III subunits ga | 3e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 4e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 5e-06 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 5e-06 | |
| pfam07174 | 297 | pfam07174, FAP, Fibronectin-attachment protein (FA | 5e-06 | |
| PRK11633 | 226 | PRK11633, PRK11633, cell division protein DedD; Pr | 6e-06 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 8e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 9e-06 | |
| PRK14948 | 620 | PRK14948, PRK14948, DNA polymerase III subunits ga | 1e-05 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 2e-05 | |
| pfam07174 | 297 | pfam07174, FAP, Fibronectin-attachment protein (FA | 2e-05 | |
| COG5373 | 931 | COG5373, COG5373, Predicted membrane protein [Func | 2e-05 | |
| COG0810 | 244 | COG0810, TonB, Periplasmic protein TonB, links inn | 2e-05 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 3e-05 | |
| PTZ00441 | 576 | PTZ00441, PTZ00441, sporozoite surface protein 2 ( | 3e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 4e-05 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 7e-05 | |
| pfam07174 | 297 | pfam07174, FAP, Fibronectin-attachment protein (FA | 8e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-04 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 1e-04 | |
| PRK12270 | 1228 | PRK12270, kgd, alpha-ketoglutarate decarboxylase; | 1e-04 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 1e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 2e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 2e-04 | |
| pfam07174 | 297 | pfam07174, FAP, Fibronectin-attachment protein (FA | 2e-04 | |
| pfam07174 | 297 | pfam07174, FAP, Fibronectin-attachment protein (FA | 2e-04 | |
| PRK11633 | 226 | PRK11633, PRK11633, cell division protein DedD; Pr | 2e-04 | |
| COG0810 | 244 | COG0810, TonB, Periplasmic protein TonB, links inn | 2e-04 | |
| PRK14954 | 620 | PRK14954, PRK14954, DNA polymerase III subunits ga | 2e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 3e-04 | |
| PRK14948 | 620 | PRK14948, PRK14948, DNA polymerase III subunits ga | 3e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 3e-04 | |
| pfam02993 | 238 | pfam02993, MCPVI, Minor capsid protein VI | 3e-04 | |
| PRK06995 | 484 | PRK06995, flhF, flagellar biosynthesis regulator F | 3e-04 | |
| pfam02993 | 238 | pfam02993, MCPVI, Minor capsid protein VI | 5e-04 | |
| PRK10819 | 246 | PRK10819, PRK10819, transport protein TonB; Provis | 5e-04 | |
| PHA03291 | 401 | PHA03291, PHA03291, envelope glycoprotein I; Provi | 5e-04 | |
| PRK00404 | 141 | PRK00404, tatB, sec-independent translocase; Provi | 5e-04 | |
| PRK00404 | 141 | PRK00404, tatB, sec-independent translocase; Provi | 7e-04 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 7e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.001 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.001 | |
| pfam07174 | 297 | pfam07174, FAP, Fibronectin-attachment protein (FA | 0.001 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 0.001 | |
| pfam02993 | 238 | pfam02993, MCPVI, Minor capsid protein VI | 0.001 | |
| pfam03276 | 582 | pfam03276, Gag_spuma, Spumavirus gag protein | 0.001 | |
| PTZ00449 | 943 | PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti | 0.001 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 0.001 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 0.002 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 0.002 | |
| PRK12270 | 1228 | PRK12270, kgd, alpha-ketoglutarate decarboxylase; | 0.002 | |
| PHA03379 | 935 | PHA03379, PHA03379, EBNA-3A; Provisional | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| pfam12526 | 115 | pfam12526, DUF3729, Protein of unknown function (D | 0.002 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.002 | |
| PHA02682 | 280 | PHA02682, PHA02682, ORF080 virion core protein; Pr | 0.004 |
| >gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of adaptor-like proteins (AP-like), stonins | Back alignment and domain information |
|---|
Score = 480 bits (1238), Expect = e-157
Identities = 183/320 (57%), Positives = 237/320 (74%), Gaps = 13/320 (4%)
Query: 1390 HRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLV 1449
+RDR LTY+ +E+ + VDE + + G ILKQ RVR+F L F++GMP+ ELG+ND+
Sbjct: 1 YRDRGLTYREDEITVDVVDEFRGKVTKEGEILKQAVRVRIFCLAFVTGMPECELGLNDIQ 60
Query: 1450 RQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRV 1509
R+G+EVV R DIIPV TEEWI+LE VEFHSCV +DE+E+ R IKF P DAC ELMRFRV
Sbjct: 61 RKGREVVRRQDIIPVSTEEWIKLENVEFHSCVNKDEFEQSRVIKFHPLDACRFELMRFRV 120
Query: 1510 RPPRNRELPLQLKAVMCVTGNKVELRADILVPGFVSRK-LGQIPCEDIMVRFPIPECWIY 1568
RPPR RELPL +K+V+ V G VELRAD+LVPG+ SR LGQ+PCE+IM+RFP+PE W+Y
Sbjct: 121 RPPRERELPLTVKSVVSVKGAHVELRADLLVPGYTSRNPLGQVPCENIMIRFPVPEEWVY 180
Query: 1569 LFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWR 1628
LFRVEKHFRY S+KS +R GK+K A + L P L+EV+ G +KYEH +R+IVWR
Sbjct: 181 LFRVEKHFRYKSLKSKKKRPGKIK------SARELLSPPLIEVSVGTAKYEHAYRAIVWR 234
Query: 1629 MPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVS 1688
+PRLP++ +YT H L CR+ L S D+IP + + VEFTMP+T S TTVRS+S
Sbjct: 235 IPRLPEKNSAAYTPHLLSCRLELASDDEIPSSFYPHAE---VEFTMPSTTASKTTVRSIS 291
Query: 1689 ISNSDSDVPPEKYVRHLARH 1708
+SN + PEK+VR+LA++
Sbjct: 292 VSN---ENIPEKFVRYLAKY 308
|
A small family of proteins named stonins has been characterized as clathrin-dependent AP-2 mu2 chain related factors, which may act as cargo-specific sorting adaptors in endocytosis. Stonins include stonin 1 and stonin 2, which are only mammalian homologs of Drosophila stoned B, a presynaptic protein implicated in neurotransmission and synaptic vesicle (SV) recycling. They are conserved from C. elegans to humans, but are not found in prokaryotes or yeasts. This family corresponds to the mu homology domain of stonins, which is distantly related to the C-terminal domain of mu chains among AP complexes. Due to the low degree of sequence conservation of the corresponding binding site, the mu homology domain of stonins is unable to recognize tyrosine-based endocytic sorting signals. To data, little is known about the localization and function of stonin 1. Stonin 2, also known as stoned B, acts as an AP-2-dependent synaptotagmin-specific sorting adaptors for SV endocytosis. Stoned A is not a stonin. It is structurally unrelated to the adaptins and does not appear to have mammalian homologs. It is not included in this family. Length = 308 |
| >gnl|CDD|211374 cd09263, AP_stonin-2_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-2 | Back alignment and domain information |
|---|
| >gnl|CDD|211373 cd09262, AP_stonin-1_MHD, Mu homology domain (MHD) of adaptor-like protein (AP-like), stonin-1 (also called Stoned B-like factor) | Back alignment and domain information |
|---|
| >gnl|CDD|211360 cd07954, AP_MHD_Cterm, C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD) | Back alignment and domain information |
|---|
| >gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|211362 cd09251, AP-2_Mu2_Cterm, C-terminal domain of medium Mu2 subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-2 | Back alignment and domain information |
|---|
| >gnl|CDD|211364 cd09253, AP-4_Mu4_Cterm, C-terminal domain of medium Mu4 subunit in adaptor protein (AP) complex AP-4 | Back alignment and domain information |
|---|
| >gnl|CDD|211370 cd09259, AP-1_Mu1B_Cterm, C-terminal domain of medium Mu1B subunit in epithelial cell-specific clathrin-associated adaptor protein (AP) complex AP-1 | Back alignment and domain information |
|---|
| >gnl|CDD|211361 cd09250, AP-1_Mu1_Cterm, C-terminal domain of medium Mu1 subunit in clathrin-associated adaptor protein (AP) complex AP-1 | Back alignment and domain information |
|---|
| >gnl|CDD|211369 cd09258, AP-1_Mu1A_Cterm, C-terminal domain of medium Mu1A subunit in ubiquitously expressed clathrin-associated adaptor protein (AP) complex AP-1 | Back alignment and domain information |
|---|
| >gnl|CDD|216199 pfam00928, Adap_comp_sub, Adaptor complexes medium subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|211363 cd09252, AP-3_Mu3_Cterm, C-terminal domain of medium Mu3 subunit in adaptor protein (AP) complex AP-3 | Back alignment and domain information |
|---|
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
| >gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) | Back alignment and domain information |
|---|
| >gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) | Back alignment and domain information |
|---|
| >gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
| >gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
| >gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) | Back alignment and domain information |
|---|
| >gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) | Back alignment and domain information |
|---|
| >gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
| >gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI | Back alignment and domain information |
|---|
| >gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI | Back alignment and domain information |
|---|
| >gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP) | Back alignment and domain information |
|---|
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI | Back alignment and domain information |
|---|
| >gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein | Back alignment and domain information |
|---|
| >gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729) | Back alignment and domain information |
|---|
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
| >gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1753 | |||
| KOG2677|consensus | 922 | 100.0 | ||
| KOG0938|consensus | 446 | 100.0 | ||
| KOG0937|consensus | 424 | 100.0 | ||
| KOG2740|consensus | 418 | 100.0 | ||
| PF00928 | 262 | Adap_comp_sub: Adaptor complexes medium subunit fa | 100.0 | |
| KOG1924|consensus | 1102 | 99.13 | ||
| KOG1924|consensus | 1102 | 99.06 | ||
| KOG2635|consensus | 512 | 98.7 | ||
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 98.45 | |
| KOG3671|consensus | 569 | 98.41 | ||
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 98.38 | |
| PF10291 | 257 | muHD: Muniscin C-terminal mu homology domain; Inte | 98.03 | |
| KOG3671|consensus | 569 | 97.99 | ||
| PF01217 | 141 | Clat_adaptor_s: Clathrin adaptor complex small cha | 97.93 | |
| KOG1923|consensus | 830 | 96.96 | ||
| KOG1830|consensus | 518 | 96.72 | ||
| KOG1923|consensus | 830 | 96.37 | ||
| PRK15319 | 2039 | AIDA autotransporter-like protein ShdA; Provisiona | 94.36 | |
| KOG1830|consensus | 518 | 94.27 | ||
| KOG0132|consensus | 894 | 94.09 | ||
| PRK15319 | 2039 | AIDA autotransporter-like protein ShdA; Provisiona | 93.07 | |
| KOG4849|consensus | 498 | 92.03 | ||
| KOG4672|consensus | 487 | 91.96 | ||
| KOG1922|consensus | 833 | 91.44 | ||
| PRK15313 | 955 | autotransport protein MisL; Provisional | 90.6 | |
| KOG4672|consensus | 487 | 90.2 | ||
| PRK15313 | 955 | autotransport protein MisL; Provisional | 88.75 | |
| PHA03378 | 991 | EBNA-3B; Provisional | 87.99 | |
| PHA03378 | 991 | EBNA-3B; Provisional | 85.88 | |
| KOG0307|consensus | 1049 | 85.86 | ||
| KOG0566|consensus | 1080 | 84.64 | ||
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 82.5 | |
| KOG1922|consensus | 833 | 81.89 | ||
| KOG0132|consensus | 894 | 81.14 |
| >KOG2677|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-112 Score=986.07 Aligned_cols=445 Identities=38% Similarity=0.652 Sum_probs=421.3
Q ss_pred CCCCceeeeeccccccccccccceEEEEEEEecCCcceEEEeccCCCCCCCcccCCCCceeeccccccccccCCCeEEEE
Q psy5848 1218 DGPGWEMHLRQPNKKKITGQRFWKKVFVKIVYHGEKPVVHLYNKADDKDPFQELPLEPCYSVSEIGAQQYDNFGKIFTVK 1297 (1753)
Q Consensus 1218 ~~~gW~~~lR~P~KK~~~~~R~W~pi~vrl~~~g~~~~lql~~ek~~~~Pf~E~~Lq~~~~lS~~~lq~yd~~gKIHtVk 1297 (1753)
.++||+||||||+|||||++||||||||||+..| +|||||++|+++|||||+||+||+|||++||+||++|||||||
T Consensus 446 P~~GW~~MlRiPeKKn~MssR~WgPifvkl~~~g---~LqlYyeqglekPf~E~~L~~~~~lSep~lqnydv~GkIHtvk 522 (922)
T KOG2677|consen 446 PRDGWPMMLRIPEKKNIMSSRHWGPIFVKLTDTG---YLQLYYEQGLEKPFREFKLEICHELSEPRLQNYDVNGKIHTVK 522 (922)
T ss_pred CCCCCcceeecchhhhhhhhccccceEEEEcCCc---eEEEeecccccchHHHHhhhhhhccCchhhhccccccceeEEE
Confidence 3899999999999999999999999999999766 9999999999999999999999999999999999999999999
Q ss_pred EeeEEEeecCCCCCCcchhHHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCcccccccccceeeccCCcccccccccc
Q psy5848 1298 LQFIFYKERPGVRPGQVTKAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHAPQTSQLFKIGSHSYEAMKQFT 1377 (1753)
Q Consensus 1298 l~~v~ykEk~~~~P~~~~~~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~TepniLq~LKlGS~~~~dl~sf~ 1377 (1753)
|+||+||||++||| |.++.|++++.+.||+|+++|.++++|+
T Consensus 523 i~~V~YkEK~ky~p--------------------------------------k~~v~H~a~~eq~lKlGstny~dfl~Fi 564 (922)
T KOG2677|consen 523 IDRVTYKEKKKYQP--------------------------------------KPAVAHTAEREQVLKLGSTNYDDFLSFI 564 (922)
T ss_pred EEEEEeehhcccCC--------------------------------------CCccccchhhhhhhhccCCcHHHHHHHH
Confidence 99999999999999 5889999999999999999999999999
Q ss_pred hhhhhhhccCCcccccccccccceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCCCeEEEEecccccccccccc
Q psy5848 1378 VCIEEALFKLPVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVG 1457 (1753)
Q Consensus 1378 ~tve~aL~slppWR~~gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGmPec~LgLND~~l~gkevvG 1457 (1753)
++|++.||+++.-|...-+|..+||.|||+++++++|+++|+++.+.|..+|+|+|||+|.++|+|||||.+++|+++|-
T Consensus 565 ttVed~Lmklpv~s~~k~nY~e~EI~v~~~Defsg~V~Keg~~~~~~v~tri~cL~FlsG~~ec~lgLND~~~kg~Eiv~ 644 (922)
T KOG2677|consen 565 TTVEDRLMKLPVLSMDKSNYLEEEITVDVRDEFSGIVSKEGQILQHHVLTRIHCLSFLSGLAECRLGLNDILVKGNEIVL 644 (922)
T ss_pred HHHHHHHhcCccccccccccccceeEEEEEeccceeecccchhhhhhhhhhhhhhhhccCCceeEeecchhhhcccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccEEeccccccccccccccccCceEEEeCCCCceeeeEeEEecCCCCCCCCeEEEEEEEEeCcEEEEEEE
Q psy5848 1458 RHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCVTGNKVELRAD 1537 (1753)
Q Consensus 1458 r~di~P~~~~~~I~LdDcsFHqCVdLdeFE~dRvISFIPPDGeFfeLMrYRVs~~~n~~LPF~Vkp~v~vsg~kVELri~ 1537 (1753)
|.||||..+.+||+|.+|.||.||+.++|+++|+|.|.|+|||||+|||||+..+.+ +|||.|+..+.+.|++|||+++
T Consensus 645 rkDimp~~t~kwI~~~~~~FH~cVn~~eF~~srVI~F~PlDaCrFElMRFrt~~~~~-~lpftlks~~~V~Ga~VEvq~~ 723 (922)
T KOG2677|consen 645 RKDIMPTTTTKWIKLHECRFHGCVNEDEFHNSRVILFNPLDACRFELMRFRTVFAEK-TLPFTLKSATSVNGAEVEVQSW 723 (922)
T ss_pred eccccccccccceeeeeeeeecccchhhccccceEEecCcccceeeeeeeeeecCCC-cCceeeeeeeeeccceeehHHH
Confidence 999999999999999999999999999999999999999999999999999998654 8999999999999999999999
Q ss_pred EeccCcccCC---CCCcccceEEEEecCCCcchhhhccccccccccccccccccCccccceeecccccCCCCcceeeCce
Q psy5848 1538 ILVPGFVSRK---LGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSG 1614 (1753)
Q Consensus 1538 L~vtgf~S~~---~~q~~cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~G 1614 (1753)
++|...+++. ..+++|+||+||||||..|||+||+|+++|++|+|++++|.++.+++. +..++++|+|++|
T Consensus 724 ~~mat~~qr~rd~~~~vpCenI~IrfPVPs~WIk~fr~e~~~g~kSlkaK~nR~a~~gsl~------~~~sepvi~vt~G 797 (922)
T KOG2677|consen 724 LRMATGFQRNRDPLTQVPCENIMIRFPVPSEWIKNFRRESVLGEKSLKAKVNRGASFGSLS------VSGSEPVIRVTLG 797 (922)
T ss_pred HHHHhhhhhccCccccCcccceeEeccCcHHHHHHHHHHhhhccchhhhhhcccccccchh------hccCCceEEEeec
Confidence 9875444432 457999999999999999999999999999999999998866554432 1235799999999
Q ss_pred eEEeecCCcEEEEEeCCCCCCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEeCcccccccEEeEEEeecCCC
Q psy5848 1615 QSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNSDS 1694 (1753)
Q Consensus 1615 tAKYe~~~raIVWrI~KLpGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeIP~~TaSGLkVRSLkV~e~~~ 1694 (1753)
+|||++++++|||||+||+.++++.|++|+|.|+|+|+|++++|..| ++++.|+|+||..++|.+.||+|.|..
T Consensus 798 ~AKYEhay~siVWrI~RLPdKnsa~~hpHcl~c~lELgSd~evPs~f---~p~~~V~FsmP~t~aS~t~VRSisVE~--- 871 (922)
T KOG2677|consen 798 TAKYEHAYNSIVWRINRLPDKNSASGHPHCLFCHLELGSDREVPSRF---APHVNVEFSMPTTSASKTSVRSISVED--- 871 (922)
T ss_pred chhhHHhhhhheeecccCCccccccCCCeeEEEEEeccccccCchhh---ccccceeeeccccccccceeeeeeccc---
Confidence 99999999999999999999999999999999999999999999998 999999999999999999999999965
Q ss_pred CCCCccCeEEEEEcCcEEEEEe
Q psy5848 1695 DVPPEKYVRHLARHEYRVGIEH 1716 (1753)
Q Consensus 1695 ~ykP~KWVRYiTkSgYyV~re~ 1716 (1753)
...+.|||+|.++|.|+|.+..
T Consensus 872 ~~~v~K~V~y~A~Y~yqv~l~~ 893 (922)
T KOG2677|consen 872 KTDVRKWVNYSAHYSYQVALGS 893 (922)
T ss_pred cccHHHHHhhhhheeeeeeecc
Confidence 4589999999999999999874
|
|
| >KOG0938|consensus | Back alignment and domain information |
|---|
| >KOG0937|consensus | Back alignment and domain information |
|---|
| >KOG2740|consensus | Back alignment and domain information |
|---|
| >PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG1924|consensus | Back alignment and domain information |
|---|
| >KOG1924|consensus | Back alignment and domain information |
|---|
| >KOG2635|consensus | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >KOG3671|consensus | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans | Back alignment and domain information |
|---|
| >KOG3671|consensus | Back alignment and domain information |
|---|
| >PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >KOG1923|consensus | Back alignment and domain information |
|---|
| >KOG1830|consensus | Back alignment and domain information |
|---|
| >KOG1923|consensus | Back alignment and domain information |
|---|
| >PRK15319 AIDA autotransporter-like protein ShdA; Provisional | Back alignment and domain information |
|---|
| >KOG1830|consensus | Back alignment and domain information |
|---|
| >KOG0132|consensus | Back alignment and domain information |
|---|
| >PRK15319 AIDA autotransporter-like protein ShdA; Provisional | Back alignment and domain information |
|---|
| >KOG4849|consensus | Back alignment and domain information |
|---|
| >KOG4672|consensus | Back alignment and domain information |
|---|
| >KOG1922|consensus | Back alignment and domain information |
|---|
| >PRK15313 autotransport protein MisL; Provisional | Back alignment and domain information |
|---|
| >KOG4672|consensus | Back alignment and domain information |
|---|
| >PRK15313 autotransport protein MisL; Provisional | Back alignment and domain information |
|---|
| >PHA03378 EBNA-3B; Provisional | Back alignment and domain information |
|---|
| >PHA03378 EBNA-3B; Provisional | Back alignment and domain information |
|---|
| >KOG0307|consensus | Back alignment and domain information |
|---|
| >KOG0566|consensus | Back alignment and domain information |
|---|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
| >KOG1922|consensus | Back alignment and domain information |
|---|
| >KOG0132|consensus | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1753 | ||||
| 4en2_M | 266 | Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain | 3e-09 | ||
| 1w63_M | 423 | Ap1 Clathrin Adaptor Core Length = 423 | 4e-09 | ||
| 1i31_A | 314 | Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, | 1e-08 | ||
| 1bw8_A | 321 | Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D | 1e-08 | ||
| 2pr9_A | 299 | Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D | 2e-08 | ||
| 1bxx_A | 285 | Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D | 2e-08 | ||
| 1h6e_A | 288 | Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D | 2e-08 | ||
| 2bp5_M | 435 | Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second D | 2e-08 | ||
| 4emz_A | 266 | Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain | 2e-07 | ||
| 3ml6_A | 385 | A Complex Between Dishevlled2 And Clathrin Adaptor | 4e-07 | ||
| 2xa7_M | 446 | Ap2 Clathrin Adaptor Core In Active Complex With Ca | 6e-07 |
| >pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 | Back alignment and structure |
|
| >pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core Length = 423 | Back alignment and structure |
| >pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor, Complexed With Egfr Internalization Peptide Fyralm At 2.5 A Resolution Length = 314 | Back alignment and structure |
| >pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Egfr Internalization Peptide Fyralm Length = 321 | Back alignment and structure |
| >pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Gabaa Receptor-Gamma2 Subunit-Derived Internalization Peptide Deeygyecl Length = 299 | Back alignment and structure |
| >pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Tgn38 Internalization Peptide Dyqrln Length = 285 | Back alignment and structure |
| >pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Ctla-4 Internalization Peptide Ttgvyvkmppt Length = 288 | Back alignment and structure |
| >pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain), Complexed With Non-Canonical Internalization Peptide Vedyeqglsg Length = 435 | Back alignment and structure |
| >pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1 Adaptin Subunit Of Ap1 Adaptor (Second Domain) Length = 266 | Back alignment and structure |
| >pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2 Length = 385 | Back alignment and structure |
| >pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 446 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435 | Back alignment and structure |
|---|
Score = 152 bits (383), Expect = 3e-39
Identities = 71/396 (17%), Positives = 145/396 (36%), Gaps = 61/396 (15%)
Query: 1318 ERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHAP--QTSQLFKIGSHSYEAMKQ 1375
+ + + + I+ ++ + E ++ G P + + + G S K+
Sbjct: 87 DVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKE 146
Query: 1376 FTVCIEEALFKLPVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFL 1435
I + R + Y+ E+ + ++ + + + G +L R+ +L
Sbjct: 147 EQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYL 206
Query: 1436 SGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFK 1495
SGMP+ + G+ND + K+ G D ++ I ++ FH CV+ +++ R+I F
Sbjct: 207 SGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFI 266
Query: 1496 PPDACYIELMRFRVRPPRNRELPLQLKAVMCV-TGNKVELRADILVPGFVSRKLGQIPCE 1554
PPD + ELMR+ R ++ LP ++ ++ K+E++ I S + +
Sbjct: 267 PPDGEF-ELMRY--RTTKDIILPFRVIPLVREVGRTKLEVKVVIK-----SNFKPSLLAQ 318
Query: 1555 DIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSG 1614
I VR P P ++ + G
Sbjct: 319 KIEVRIPTPLN-----------------------------------TSGVQ---VICMKG 340
Query: 1615 QSKYEHQHRSIVWRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTM 1674
++KY+ +IVW++ R+ + + L + + F +
Sbjct: 341 KAKYKASENAIVWKIKRMAGM-----KESQISAEIELLPTNDKKKWARPPI---SMNFEV 392
Query: 1675 PATQVSHTTVRSVSISNSD---SDVPPEKYVRHLAR 1707
P S VR + + SD K+VR++ R
Sbjct: 393 PFA-PSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGR 427
|
| >1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A Length = 314 | Back alignment and structure |
|---|
| >3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 | Back alignment and structure |
|---|
| >1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423 | Back alignment and structure |
|---|
| >4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A Length = 266 | Back alignment and structure |
|---|
| >3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
| >2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 | Back alignment and structure |
|---|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
| >2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 | Back alignment and structure |
|---|
| >2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 | Back alignment and structure |
|---|
| >3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 | Back alignment and structure |
|---|
| >3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 | Back alignment and structure |
|---|
| >3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231 | Back alignment and structure |
|---|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
| >3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 | Back alignment and structure |
|---|
| >2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253 | Back alignment and structure |
|---|
| >1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1753 | |||
| 2vgl_M | 435 | AP-2 complex subunit MU-1; cytoplasmic vesicle, al | 100.0 | |
| 1w63_M | 423 | Adaptor-related protein complex 1, MU 1 subunit; e | 100.0 | |
| 1i31_A | 314 | Clathrin coat assembly protein AP50; beta-sandwich | 100.0 | |
| 4en2_M | 266 | AP-1 complex subunit MU-1; human immunodeficiency | 100.0 | |
| 3ml6_A | 385 | Chimeric complex between protein dishevlled2 HOMO | 100.0 | |
| 3l81_A | 301 | AP-4 complex subunit MU-1; immunoglobulin-like bet | 100.0 | |
| 1w63_Q | 158 | Adapter-related protein complex 1 sigma 1A subunit | 98.6 | |
| 2vgl_S | 142 | AP-2 complex subunit sigma-1; cytoplasmic vesicle, | 98.54 | |
| 3tjz_C | 153 | Coatomer subunit zeta-1; protein trafficking, golg | 98.41 | |
| 3g9h_A | 328 | Suppressor of yeast profilin deletion; SYP1, MU, a | 98.1 | |
| 3h0g_A | 1752 | DNA-directed RNA polymerase II subunit RPB1; trans | 90.41 | |
| 3h0g_A | 1752 | DNA-directed RNA polymerase II subunit RPB1; trans | 89.72 |
| >2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-67 Score=618.34 Aligned_cols=407 Identities=19% Similarity=0.295 Sum_probs=300.2
Q ss_pred ecCCcceEEEeccCCCC----CCCcccCCCCceeeccccccccccCCCeEEEEEee----EEEeecCCCCCCcch-----
Q psy5848 1249 YHGEKPVVHLYNKADDK----DPFQELPLEPCYSVSEIGAQQYDNFGKIFTVKLQF----IFYKERPGVRPGQVT----- 1315 (1753)
Q Consensus 1249 ~~g~~~~lql~~ek~~~----~Pf~E~~Lq~~~~lS~~~lq~yd~~gKIHtVkl~~----v~ykEk~~~~P~~~~----- 1315 (1753)
...++.+|.-||..... +-|....+... +.+.-.+=..+.+.+|+++| ++...+...-+-++.
T Consensus 9 ~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~----~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~ 84 (435)
T 2vgl_M 9 NHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR----QQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYK 84 (435)
T ss_dssp CTTCCEEEEEECSSSCCHHHHHHHHHHTTTCS----SCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHH
T ss_pred CCCCCEEEEEecCCCCChhHHHHHHHHHhccc----cCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHH
Confidence 33346677777764321 22332222211 11223344566788888888 566666666652221
Q ss_pred hHHHHHHHhhhhhHhhhhcchhhHHHHHhhhhcCCcccccccccceeecc-CCcccccc-cccchhhhhhhccCCccccc
Q psy5848 1316 KAERITNKLSQFAAYAIQGDYQGVKEFGSDLRKLGLPVEHAPQTSQLFKI-GSHSYEAM-KQFTVCIEEALFKLPVHRDR 1393 (1753)
Q Consensus 1316 ~~e~L~dYlG~LnEesIr~NFvLVYELLDEmiD~GyPq~TepniLq~LKl-GS~~~~dl-~sf~~tve~aL~slppWR~~ 1393 (1753)
.+++|.+|||.++|..|+.||++||+|||||||+||||+|++++|+.++. .+...... ..-...+..+..+.++||+.
T Consensus 85 ~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~wr~~ 164 (435)
T 2vgl_M 85 MCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRRE 164 (435)
T ss_dssp HHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------CCSSCS
T ss_pred HHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccccccccc
Confidence 45889999999999999999999999999999999999999999999954 33211000 00001112233456899999
Q ss_pred ccccccceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCCCeEEEEeccccccccccccccccccccccccEEec
Q psy5848 1394 ALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTEEWIRLE 1473 (1753)
Q Consensus 1394 gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGmPec~LgLND~~l~gkevvGr~di~P~~~~~~I~Ld 1473 (1753)
|++|++|||||||+|+|+++++++|.+++++|.|+|+|+|||||||+|+|+||+..+.++...++....+..+..++.|+
T Consensus 165 gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (435)
T 2vgl_M 165 GIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAID 244 (435)
T ss_dssp CCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC-----------------CCCCC
T ss_pred cCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccccccccccccCceEcc
Confidence 99999999999999999999999999999999999999999999999999999986543221111000011123578999
Q ss_pred cccccccccccccccCceEEEeCCCCceeeeEeEEecCCCCCCCCeEEEEEEEEe-CcEEEEEEEEeccCcccCCCCCcc
Q psy5848 1474 GVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCVT-GNKVELRADILVPGFVSRKLGQIP 1552 (1753)
Q Consensus 1474 DcsFHqCVdLdeFE~dRvISFIPPDGeFfeLMrYRVs~~~n~~LPF~Vkp~v~vs-g~kVELri~L~vtgf~S~~~~q~~ 1552 (1753)
||+||+||++++|+++|+|+|+||||+| +||+||++. +..+||+|.+.+... ++++|+++.+.. .+. .+..
T Consensus 245 d~~fH~cV~~~~f~~~r~isF~PPdg~F-~Lm~Yr~~~--~~~~P~~i~~~~~~~~~~~ve~~l~~~~-~~~----~~~~ 316 (435)
T 2vgl_M 245 DCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYRTTK--DIILPFRVIPLVREVGRTKLEVKVVIKS-NFK----PSLL 316 (435)
T ss_dssp EEEECTTEEEC-----CCEEECCCSEEE-EEEEEEECS--SCCCSEEEEEEEECCTTTEEEEEEEEEE-CSC----TTSE
T ss_pred ccccceeecHhHhccCceEEEECCCCcE-EEEEEEecC--CcCCCeEEEEEEEecCCCEEEEEEEEeC-CCC----CCce
Confidence 9999999999999999999999999999 999999986 577999999988854 478999998742 222 2367
Q ss_pred cceEEEEecCCCcchhhhccccccccccccccccccCccccceeecccccCCCCcceeeCceeEEeecCCcEEEEEeCCC
Q psy5848 1553 CEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRMPRL 1632 (1753)
Q Consensus 1553 cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~raIVWrI~KL 1632 (1753)
|+||.|+||+|+++. .+.++++.|+++|++.+++|+|+|+++
T Consensus 317 ~~~V~I~IP~P~~~~--------------------------------------~~~~~~~~G~~~y~~~~~~l~W~I~~~ 358 (435)
T 2vgl_M 317 AQKIEVRIPTPLNTS--------------------------------------GVQVICMKGKAKYKASENAIVWKIKRM 358 (435)
T ss_dssp EEEEEEEEECCSSCC--------------------------------------CEEEEESSSEEEEETTTTEEEEEEEEE
T ss_pred eeEEEEEEECCCCCC--------------------------------------CceEEecceeEEEccCCCEEEEEeccC
Confidence 999999999999852 023668889999999999999999999
Q ss_pred CCCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEeCcccccccEEeEEEeecC---CCCCCCccCeEEEEEcC
Q psy5848 1633 PKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNS---DSDVPPEKYVRHLARHE 1709 (1753)
Q Consensus 1633 pGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeIP~~TaSGLkVRSLkV~e~---~~~ykP~KWVRYiTkSg 1709 (1753)
+|+ ++++|+|+|+|.+......+ ..+||+|+|+|| +++|||+|+||+|.++ .++|+|+|||||+|++|
T Consensus 359 ~~~-----~~~~l~~~~~l~~~~~~~~~---~~~pi~v~F~i~-~t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg 429 (435)
T 2vgl_M 359 AGM-----KESQISAEIELLPTNDKKKW---ARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSG 429 (435)
T ss_dssp ETT-----CEEEEEEEEECCCCSCSCCC---CCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEE
T ss_pred CCC-----CCEEEEEEEEecCCCcCccc---CCCcEEEEEEEE-ecccccEEEEEEEeccccccCCCCCcCceEEEEeCC
Confidence 977 47899999999765322222 278999999999 9999999999999886 24799999999999999
Q ss_pred cEEEE
Q psy5848 1710 YRVGI 1714 (1753)
Q Consensus 1710 YyV~r 1714 (1753)
.|.+|
T Consensus 430 ~y~~R 434 (435)
T 2vgl_M 430 IYETR 434 (435)
T ss_dssp EEEEC
T ss_pred eEEEc
Confidence 88776
|
| >1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
| >1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A | Back alignment and structure |
|---|
| >4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A | Back alignment and structure |
|---|
| >3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} | Back alignment and structure |
|---|
| >3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
| >2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S | Back alignment and structure |
|---|
| >3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A | Back alignment and structure |
|---|
| >3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1753 | ||||
| d2pr9a1 | 277 | b.2.7.1 (A:159-435) Second domain of Mu2 adaptin s | 2e-46 |
| >d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 277 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Common fold of diphtheria toxin/transcription factors/cytochrome f superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 166 bits (421), Expect = 2e-46
Identities = 63/321 (19%), Positives = 122/321 (38%), Gaps = 59/321 (18%)
Query: 1391 RDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVR 1450
R + Y+ E+ + ++ + + + G +L R+ +LSGMP+ + G+ND +
Sbjct: 4 RREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIV 63
Query: 1451 QGKEVVGRHDIIPVVTEEWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVR 1510
K+ G D ++ I ++ FH CV+ +++ R+I F PPD + ELMR+R
Sbjct: 64 IEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYRT- 121
Query: 1511 PPRNRELPLQLKAVMCVT-GNKVELRADILVPGFVSRKLGQIPCEDIMVRFPIPECWIYL 1569
++ LP ++ ++ K+E++ I S + + I VR P P
Sbjct: 122 -TKDIILPFRVIPLVREVGRTKLEVKVVI-----KSNFKPSLLAQKIEVRIPTPLN---- 171
Query: 1570 FRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIVWRM 1629
++ + G++KY+ +IVW++
Sbjct: 172 -------------------------------TSGVQ---VICMKGKAKYKASENAIVWKI 197
Query: 1630 PRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSI 1689
R+ + + L + + F +P S VR + +
Sbjct: 198 KRMA-----GMKESQISAEIELLPTNDKKKWAR---PPISMNFEVPFA-PSGLKVRYLKV 248
Query: 1690 SNSD---SDVPPEKYVRHLAR 1707
SD K+VR++ R
Sbjct: 249 FEPKLNYSDHDVIKWVRYIGR 269
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1753 | |||
| d2pr9a1 | 277 | Second domain of Mu2 adaptin subunit (ap50) of ap2 | 100.0 | |
| d2vglm2 | 141 | Mu2 adaptin (clathrin coat assembly protein AP50) | 98.83 | |
| d2vgls_ | 142 | Sigma2 adaptin (clathrin coat assembly protein AP1 | 98.11 |
| >d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Common fold of diphtheria toxin/transcription factors/cytochrome f superfamily: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor family: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor domain: Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=8.9e-59 Score=515.86 Aligned_cols=272 Identities=23% Similarity=0.383 Sum_probs=220.9
Q ss_pred CcccccccccccceEEEEEEEeEEEEEccccceEEeeeeEEEEEEEeecCCCeEEEEecccccccccccccccccccccc
Q psy5848 1388 PVHRDRALTYKMEEVQITTVDEIYVEQNETGSILKQIARVRLFFLGFLSGMPDIELGVNDLVRQGKEVVGRHDIIPVVTE 1467 (1753)
Q Consensus 1388 ppWR~~gIkYkkNEIFVDVIE~LnvIVdsnG~VL~seV~GsI~~kSFLSGmPec~LgLND~~l~gkevvGr~di~P~~~~ 1467 (1753)
+|||+.|++|++|||||||+|+|+++++++|++++++|.|+|+|+|||+|||+|.|+||+....++...++.+..+....
T Consensus 1 i~WR~~~i~y~~NEi~vDV~E~i~~~~~~~G~~~~~~V~G~I~~~s~LsG~P~~~l~Ln~~~~~~~~~~~~~~~~~~~~~ 80 (277)
T d2pr9a1 1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 80 (277)
T ss_dssp CTTSCSCCCCSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSSCEEEEEESBC------------------C
T ss_pred CCccCCCCcccCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEecCCCCeEEEEecchhhccccccccccccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999998776665555666677788
Q ss_pred ccEEeccccccccccccccccCceEEEeCCCCceeeeEeEEecCCCCCCCCeEEEEEEEE-eCcEEEEEEEEeccCcccC
Q psy5848 1468 EWIRLEGVEFHSCVQQDEYEKGRTIKFKPPDACYIELMRFRVRPPRNRELPLQLKAVMCV-TGNKVELRADILVPGFVSR 1546 (1753)
Q Consensus 1468 ~~I~LdDcsFHqCVdLdeFE~dRvISFIPPDGeFfeLMrYRVs~~~n~~LPF~Vkp~v~v-sg~kVELri~L~vtgf~S~ 1546 (1753)
.|+.|+||+||+||++++|+++|+|+|+||||+| +||+||+.. +..+||.+.+.+.. +++++++++.|.+ . .
T Consensus 81 ~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F-~Lm~Y~~~~--~~~~P~~i~~~~~~~~~~~~~~~i~l~~-~-~-- 153 (277)
T d2pr9a1 81 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEF-ELMRYRTTK--DIILPFRVIPLVREVGRTKLEVKVVIKS-N-F-- 153 (277)
T ss_dssp CCBCCSEEEECTTSBCC-----CCEEECCCSEEE-EEEEEEECS--SCCCCEEEEEEEEEETTTEEEEEEEEEE-C-S--
T ss_pred CceEccceeeeeccccccccccceEeecCCCCcE-EEEEEEcCC--CcCCCcEEEEEEEeccCcEEEEEEEEEe-c-c--
Confidence 8999999999999999999999999999999999 999999985 57799999998874 5678888888852 1 1
Q ss_pred CCCCcccceEEEEecCCCcchhhhccccccccccccccccccCccccceeecccccCCCCcceeeCceeEEeecCCcEEE
Q psy5848 1547 KLGQIPCEDIMVRFPIPECWIYLFRVEKHFRYGSVKSAHRRTGKVKGIERFLGAVDNLEPQLMEVTSGQSKYEHQHRSIV 1626 (1753)
Q Consensus 1547 ~~~q~~cENV~IrIPVPk~~ik~Fr~E~l~rq~SVkS~~rr~~kik~VE~~LGs~dt~~~~vi~vS~GtAKYe~~~raIV 1626 (1753)
..+..|+||.|+||+|.++. + ..++++.|+++|++.+++|+
T Consensus 154 -~~~~~~~~v~I~iP~P~~~~---------------~-----------------------~~~~~~~G~~~y~~~~~~l~ 194 (277)
T d2pr9a1 154 -KPSLLAQKIEVRIPTPLNTS---------------G-----------------------VQVICMKGKAKYKASENAIV 194 (277)
T ss_dssp -CTTCEEEEEEEEEECCTTEE---------------E-----------------------EEEEESSSEEEEEGGGTEEE
T ss_pred -CCCeeeeEEEEEeeCCCccc---------------C-----------------------ceEEecCceEEEeccCCEEE
Confidence 23478999999999998742 0 12567899999999999999
Q ss_pred EEeCCCCCCCCCcccceeeEEEEeeccCCCCCcccccCCCceEEEEEeCcccccccEEeEEEeecCC---CCCCCccCeE
Q psy5848 1627 WRMPRLPKEGQGSYTTHNLVCRMALTSYDQIPDDLHTICQYAYVEFTMPATQVSHTTVRSVSISNSD---SDVPPEKYVR 1703 (1753)
Q Consensus 1627 WrI~KLpGkgsa~~teh~Lsc~~eLsS~~eip~~~k~~~ppIsVeFeIP~~TaSGLkVRSLkV~e~~---~~ykP~KWVR 1703 (1753)
|+|++++++ .+++|+|++++.+........ .+||+|+|+|| +++|||+|++|+|.+.. .+|+|+||||
T Consensus 195 W~I~k~~~~-----~~~~l~~~~~~~~~~~~~~~~---~~pi~v~F~ip-~t~Sgl~V~~l~v~~~~~~~~~~~~~k~vr 265 (277)
T d2pr9a1 195 WKIKRMAGM-----KESQISAEIELLPTNDKKKWA---RPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVR 265 (277)
T ss_dssp EEEEEEETT-----CEEEEEEEEEECCCCSSSCCC---CCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGSEEEEE
T ss_pred EecccccCC-----ccceEEEEEEeccCCCCcccc---CCcEEEEEEec-ccccceEEEEEEEeccccCCCCCCCCCCEE
Confidence 999999987 467899999998776655443 78999999999 78999999999998753 4689999999
Q ss_pred EEEEcCcEEEE
Q psy5848 1704 HLARHEYRVGI 1714 (1753)
Q Consensus 1704 YiTkSgYyV~r 1714 (1753)
|+|+||+|++|
T Consensus 266 Y~t~sg~Y~~R 276 (277)
T d2pr9a1 266 YIGRSGIYETR 276 (277)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEECCCEEEC
Confidence 99999988876
|