Psyllid ID: psy5866

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MDKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQV
Secondary Structure (PSIPRED)
cccEEEEEEcccccEEEEEEcccccccccEEEEEEEEEcccccccEEEEEEEEEEccccccEEccccccEEEccccEEEEEEccccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccEEEEEEEEEEEccccEEEEEEEcccccccccccEEEEEEEcccccccEccccEEEEEcccEEEEEEEEcccccccEEEEEEEc
Coil and Loop (DISEMBL)
MDKVEIIdyrpdsgrydliisnasferdngKFECRLkaagsgqdlhsqvytvtvltppqppkispganpvategRAIELvcstsggspdpqisvtlqv
Flexible Loop (DISEMBL)
mdkveiidyrpdsgrydLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVcstsggspdpqisvtlqv
Low Complexity Region (SEG)
MDKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQV
Disordered region (IsUnstruct)
*****IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL*******************************************
Disordered Region (DISOPRED)
**KVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSG*DLHSQVYTVTVLTPPQPPKISPGAN**ATEGRAIELVCSTSGGSPDPQISVTLQV
Disordered Region (DISEMBL)
MDKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQV
Disordered Region (DISPRO)
*DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
Q08180	764	Irregular chiasm C-roughe	no	N/A	0.826	0.106	0.337	1e-05

>sp|Q08180|ICCR_DROME Irregular chiasm C-roughest protein OS=Drosophila melanogaster GN=rst PE=2 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 12  DSGRYDLIISNASFERDNGKFECRLKAAGSGQ-DLHSQVYTVTVLTPPQPPKISPGANPV 70
           + G Y L I     + D+ +++C++     GQ  + S    +TVL PP+ PKI+ G    
Sbjct: 86  EEGDYSLDIYPVMLD-DDARYQCQVSPGPEGQPAIRSTFAGLTVLVPPEAPKITQGDVIY 144

Query: 71  ATEGRAIELVCSTSGGSPDPQIS 93
           ATE R +E+ C + GG P  +I+
Sbjct: 145 ATEDRKVEIECVSVGGKPAAEIT 167

Required for correct axonal pathway formation in the optic lobe and for programmed cell death in the developing retina.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
193709120	1260	PREDICTED: hemicentin-2-like [Acyrthosip	0.857	0.066	0.690	6e-31
157134890	227	echinoid [Aedes aegypti] gi|108881353|gb	0.887	0.383	0.609	6e-27
170050544	217	echinoid [Culex quinquefasciatus] gi|167	0.948	0.428	0.580	1e-26
270013632	1281	hypothetical protein TcasGA2_TC012257 [T	0.938	0.071	0.576	1e-25
195035257	1383	GH11534 [Drosophila grimshawi] gi|193905	0.887	0.062	0.574	3e-24
242008006	1169	echinoid, putative [Pediculus humanus co	0.724	0.060	0.704	3e-24
195386448	1282	GJ17263 [Drosophila virilis] gi|19414837	0.887	0.067	0.574	3e-24
189182172	988	LP04739p [Drosophila melanogaster]	0.887	0.088	0.574	3e-24
195035245	1193	GH10235 [Drosophila grimshawi] gi|193905	0.887	0.072	0.574	3e-24
442625813	1281	echinoid, isoform C [Drosophila melanoga	0.887	0.067	0.574	3e-24

>gi|193709120|ref|XP_001949048.1| PREDICTED: hemicentin-2-like [Acyrthosiphon pisum]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 76/84 (90%)

Query: 7   IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
           +D+RP+ G YDL+ISN+++ERDNGKFECRLK AG+G+++HSQ + +TVLTPP PP+ISPG
Sbjct: 77  LDFRPELGIYDLLISNSTYERDNGKFECRLKEAGTGREIHSQSFQITVLTPPSPPRISPG 136

Query: 67  ANPVATEGRAIELVCSTSGGSPDP 90
            NPVATEGRA+EL C++SGGSP+P
Sbjct: 137 TNPVATEGRALELSCTSSGGSPEP 160

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157134890|ref|XP_001656493.1| echinoid [Aedes aegypti] gi|108881353|gb|EAT45578.1| AAEL003167-PA [Aedes aegypti]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 69/87 (79%)

Query: 7   IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
           ID+RPD G YDL I+N S+ RDNG+FECR+KA+G+G D+H Q Y +TVLTPPQPP ++PG
Sbjct: 74  IDFRPDKGVYDLHITNTSYSRDNGRFECRIKASGTGADVHQQYYNLTVLTPPQPPLVAPG 133

Query: 67  ANPVATEGRAIELVCSTSGGSPDPQIS 93
              VATE + ++L CS+ GGSPDP I+
Sbjct: 134 TIAVATEDKKLDLTCSSIGGSPDPTIT 160

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170050544|ref|XP_001861359.1| echinoid [Culex quinquefasciatus] gi|167872155|gb|EDS35538.1| echinoid [Culex quinquefasciatus]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 71/93 (76%)

Query: 1   MDKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP 60
           +D    ID+RPD G YDL ISN S+ RDNG+FECR+KA+G+G D+H + Y +TVLTPPQP
Sbjct: 49  IDTGHRIDFRPDKGVYDLHISNTSYGRDNGRFECRIKASGTGADVHQEYYNLTVLTPPQP 108

Query: 61  PKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
           P ++PG   VATE + ++L CS+ GGSPDP I+
Sbjct: 109 PLVAPGTIAVATEDKKLDLTCSSIGGSPDPTIT 141

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013632|gb|EFA10080.1| hypothetical protein TcasGA2_TC012257 [Tribolium castaneum]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 71/92 (77%)

Query: 1   MDKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP 60
           +D    +++ P+ G YDL+ISNAS++RDNGKFEC++KA GSG +LH Q YT+TVLT PQ 
Sbjct: 112 LDNNYKLNFHPEKGIYDLLISNASYDRDNGKFECKVKAGGSGANLHVQRYTLTVLTAPQE 171

Query: 61  PKISPGANPVATEGRAIELVCSTSGGSPDPQI 92
           P I+PG++   TEG+  EL CS+ GGSPDPQ+
Sbjct: 172 PAIAPGSHVTVTEGKRQELTCSSVGGSPDPQV 203

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035257|ref|XP_001989094.1| GH11534 [Drosophila grimshawi] gi|193905094|gb|EDW03961.1| GH11534 [Drosophila grimshawi]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 66/87 (75%)

Query: 7   IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
           +D+ P+ G YDL I N S+ RDNG+FECR+KA G+G D+H + + +TVLTPP PP ISPG
Sbjct: 134 LDFHPERGIYDLQIKNVSYNRDNGRFECRIKAKGTGADVHQEFHNLTVLTPPHPPVISPG 193

Query: 67  ANPVATEGRAIELVCSTSGGSPDPQIS 93
           +  VATE + +EL CS+ GGSPDP I+
Sbjct: 194 SIAVATEDKPMELTCSSIGGSPDPTIT 220

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008006|ref|XP_002424804.1| echinoid, putative [Pediculus humanus corporis] gi|212508342|gb|EEB12066.1| echinoid, putative [Pediculus humanus corporis]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 63/71 (88%)

Query: 22 NASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVC 81
          N S+ERDNG FECR+KA+G+G++LHSQ Y++TVLTPP+PPKISPG NPV TEG+ +ELVC
Sbjct: 2  NTSYERDNGIFECRVKASGTGRELHSQSYSLTVLTPPEPPKISPGENPVTTEGKKMELVC 61

Query: 82 STSGGSPDPQI 92
          S+ GGSP+P I
Sbjct: 62 SSVGGSPEPYI 72

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386448|ref|XP_002051916.1| GJ17263 [Drosophila virilis] gi|194148373|gb|EDW64071.1| GJ17263 [Drosophila virilis]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 64/87 (73%)

Query: 7   IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
           +D+RP  G YDL I N S+ RDNG+FECR+KA G+G D+H + Y VTVLT P PP ++PG
Sbjct: 79  LDFRPGRGLYDLQIKNTSYNRDNGRFECRIKAKGTGADVHQEFYNVTVLTAPHPPMVTPG 138

Query: 67  ANPVATEGRAIELVCSTSGGSPDPQIS 93
              VATE + +EL CS+ GGSPDP I+
Sbjct: 139 NIAVATEEKPLELTCSSIGGSPDPTIT 165

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189182172|gb|ACD81862.1| LP04739p [Drosophila melanogaster]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 66/87 (75%)

Query: 7   IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
           +D++P+ G YDL I N S+ RDNG+FECR+KA G+G D+H + + +TVLTPP PP ISPG
Sbjct: 99  LDFQPERGIYDLQIKNVSYNRDNGRFECRIKAKGTGADVHQEFHNLTVLTPPHPPVISPG 158

Query: 67  ANPVATEGRAIELVCSTSGGSPDPQIS 93
              VATE + +EL CS+ GGSPDP I+
Sbjct: 159 NIAVATEDKPMELTCSSIGGSPDPTIT 185

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035245|ref|XP_001989088.1| GH10235 [Drosophila grimshawi] gi|193905088|gb|EDW03955.1| GH10235 [Drosophila grimshawi]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 64/87 (73%)

Query: 7   IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
           +D+RP  G YDL I N S+ RDNG+FECR+KA G+G D+H + Y VTVLT P PP ++PG
Sbjct: 80  LDFRPGRGIYDLQIKNTSYNRDNGRFECRIKAKGTGADVHQEFYNVTVLTAPHPPMVTPG 139

Query: 67  ANPVATEGRAIELVCSTSGGSPDPQIS 93
              VATE + +EL CS+ GGSPDP I+
Sbjct: 140 NIAVATEEKPLELTCSSIGGSPDPMIT 166

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442625813|ref|NP_001260014.1| echinoid, isoform C [Drosophila melanogaster] gi|440213296|gb|AGB92550.1| echinoid, isoform C [Drosophila melanogaster]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 66/87 (75%)

Query: 7   IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
           +D++P+ G YDL I N S+ RDNG+FECR+KA G+G D+H + + +TVLTPP PP ISPG
Sbjct: 99  LDFQPERGIYDLQIKNVSYNRDNGRFECRIKAKGTGADVHQEFHNLTVLTPPHPPVISPG 158

Query: 67  ANPVATEGRAIELVCSTSGGSPDPQIS 93
              VATE + +EL CS+ GGSPDP I+
Sbjct: 159 NIAVATEDKPMELTCSSIGGSPDPTIT 185

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
FB|FBgn0000547	1332	ed "echinoid" [Drosophila mela	0.887	0.065	0.574	1.7e-23
FB|FBgn0051774	1442	fred "friend of echinoid" [Dro	0.887	0.060	0.563	3.9e-23
FB|FBgn0028369	975	kirre "kin of irre" [Drosophil	0.826	0.083	0.361	2.3e-07
FB|FBgn0003285	764	rst "roughest" [Drosophila mel	0.826	0.106	0.337	7.5e-07
UNIPROTKB|E1BZW0	256	Gga.29966 "Uncharacterized pro	0.693	0.265	0.297	9.7e-06
WB|WBGene00018215	1073	igcm-1 [Caenorhabditis elegans	0.928	0.084	0.296	0.00012
UNIPROTKB|E1BZV9	569	Gga.29966 "Uncharacterized pro	0.693	0.119	0.32	0.00016
UNIPROTKB|E1BV59	579	Gga.29966 "Uncharacterized pro	0.693	0.117	0.32	0.00017
UNIPROTKB|E1C4V8	294	JAM2 "Uncharacterized protein"	0.673	0.224	0.371	0.00019
MGI|MGI:1321398	300	F11r "F11 receptor" [Mus muscu	0.653	0.213	0.373	0.0002

FB|FBgn0000547 ed "echinoid" [Drosophila melanogaster (taxid:7227)]

 Score = 284 (105.0 bits), Expect = 1.7e-23, P = 1.7e-23
 Identities = 50/87 (57%), Positives = 66/87 (75%)

Query:     7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
             +D++P+ G YDL I N S+ RDNG+FECR+KA G+G D+H + + +TVLTPP PP ISPG
Sbjct:    99 LDFQPERGIYDLQIKNVSYNRDNGRFECRIKAKGTGADVHQEFHNLTVLTPPHPPVISPG 158

Query:    67 ANPVATEGRAIELVCSTSGGSPDPQIS 93
                VATE + +EL CS+ GGSPDP I+
Sbjct:   159 NIAVATEDKPMELTCSSIGGSPDPTIT 185

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IMP;IPI

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IGI;NAS;IMP

GO:0016021 "integral to membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=ISS

GO:0050768 "negative regulation of neurogenesis" evidence=IMP

GO:0007423 "sensory organ development" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IMP;IDA

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0005913 "cell-cell adherens junction" evidence=IDA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048644 "muscle organ morphogenesis" evidence=IMP

GO:0030038 "contractile actin filament bundle assembly" evidence=IMP

GO:0007391 "dorsal closure" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0035157 "negative regulation of fusion cell fate specification" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0005912 "adherens junction" evidence=IDA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

GO:0090138 "regulation of actin cytoskeleton organization by cell-cell adhesion" evidence=IMP

GO:0035330 "regulation of hippo signaling cascade" evidence=IPI

GO:0035331 "negative regulation of hippo signaling cascade" evidence=IGI

GO:0046621 "negative regulation of organ growth" evidence=IMP

FB|FBgn0051774 fred "friend of echinoid" [Drosophila melanogaster (taxid:7227)]

 Score = 281 (104.0 bits), Expect = 3.9e-23, P = 3.9e-23
 Identities = 49/87 (56%), Positives = 64/87 (73%)

Query:     7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
             +D+RP  G YDL I N S+ RDNG+FECR+KA G+G D+H + Y +TVLT P PP ++PG
Sbjct:    73 LDFRPSRGIYDLQIKNTSYNRDNGRFECRIKAKGTGADVHQEFYNLTVLTAPHPPMVTPG 132

Query:    67 ANPVATEGRAIELVCSTSGGSPDPQIS 93
                VATE + +EL CS+ GGSPDP I+
Sbjct:   133 NLAVATEEKPLELTCSSIGGSPDPMIT 159

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=NAS

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0007423 "sensory organ development" evidence=IMP

GO:0035018 "adult chitin-based cuticle pattern formation" evidence=IMP

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0028369 kirre "kin of irre" [Drosophila melanogaster (taxid:7227)]

 Score = 131 (51.2 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 30/83 (36%), Positives = 46/83 (55%)

Query:    12 DSGRYDLIISNASFERDNGKFECRLKAAGSG-QDLHSQVYTVTVLTPPQPPKISPGANPV 70
             + G + L I     + D+ K++C++     G Q + S+   +TVL PP+ PKI+ G   V
Sbjct:   140 EEGDFSLDIYPLMLD-DDAKYQCQVGPGPQGEQGIRSRFAKLTVLVPPEAPKITQGDYLV 198

Query:    71 ATEGRAIELVCSTSGGSPDPQIS 93
              TE R IEL C + GG P  +I+
Sbjct:   199 TTEDREIELECVSQGGKPAAEIT 221

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0007520 "myoblast fusion" evidence=IMP;NAS;TAS

GO:0016202 "regulation of striated muscle tissue development" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0007523 "larval visceral muscle development" evidence=IMP

GO:0007157 "heterophilic cell-cell adhesion" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IGI;IMP

GO:0009986 "cell surface" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0097206 "nephrocyte filtration" evidence=IMP

GO:0036059 "nephrocyte diaphragm assembly" evidence=IMP

GO:0005917 "nephrocyte diaphragm" evidence=IDA

GO:0050839 "cell adhesion molecule binding" evidence=IPI

GO:0061321 "garland nephrocyte differentiation" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

FB|FBgn0003285 rst "roughest" [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 7.5e-07, P = 7.5e-07
 Identities = 28/83 (33%), Positives = 45/83 (54%)

Query:    12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQD-LHSQVYTVTVLTPPQPPKISPGANPV 70
             + G Y L I     + D+ +++C++     GQ  + S    +TVL PP+ PKI+ G    
Sbjct:    86 EEGDYSLDIYPVMLD-DDARYQCQVSPGPEGQPAIRSTFAGLTVLVPPEAPKITQGDVIY 144

Query:    71 ATEGRAIELVCSTSGGSPDPQIS 93
             ATE R +E+ C + GG P  +I+
Sbjct:   145 ATEDRKVEIECVSVGGKPAAEIT 167

GO:0005886 "plasma membrane" evidence=ISS;IDA;NAS

GO:0016202 "regulation of striated muscle tissue development" evidence=IMP

GO:0046667 "compound eye retinal cell programmed cell death" evidence=NAS;TAS

GO:0007156 "homophilic cell adhesion" evidence=IGI;TAS

GO:0007520 "myoblast fusion" evidence=TAS

GO:0016021 "integral to membrane" evidence=NAS;TAS

GO:0046666 "retinal cell programmed cell death" evidence=TAS

GO:0007409 "axonogenesis" evidence=NAS

GO:0048749 "compound eye development" evidence=IMP

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0045177 "apical part of cell" evidence=IDA

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|E1BZW0 Gga.29966 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 89 (36.4 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
 Identities = 22/74 (29%), Positives = 41/74 (55%)

Query:    17 DLIISNASFERDNGKFECRLKAAGSGQ--DLHSQVYTVTVLTPPQ-PPKIS-PGANPVAT 72
             DL+I N + + D G + C+     +G+  D+   +  +  ++PP+ PP+IS P  N +  
Sbjct:   154 DLVIFNVTVQ-DQGNYTCKTTYTYNGKQYDIARDISLIVEVSPPKMPPEISYPQNNSIEV 212

Query:    73 E-GRAIELVCSTSG 85
             E G  + + C+T+G
Sbjct:   213 ELGSEVTVDCNTTG 226

GO:0004908 "interleukin-1 receptor activity" evidence=IEA

WB|WBGene00018215 igcm-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 106 (42.4 bits), Expect = 0.00012, P = 0.00012
 Identities = 27/91 (29%), Positives = 39/91 (42%)

Query:     6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP 65
             I++    +G Y L I+        G + C +         +S + TV VL PP  P IS 
Sbjct:    91 ILENDSATGNYSLRITEVEKNSVEGTYHCNVIGTDDSDVQYSALATVVVLVPPGDPIIST 150

Query:    66 GANPVATEGRAIELVCSTSGGSPDPQISVTL 96
               +    EG  +   C + GGSP P  + TL
Sbjct:   151 TPSESVIEGDFMTAKCVSVGGSPQPTFTWTL 181

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BZV9 Gga.29966 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 87 (35.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 24/75 (32%), Positives = 42/75 (56%)

Query:    17 DLIISNASFERDNGKFECRLKAAGSGQ--DLHSQV-YTVTVLTPPQ-PPKIS-PGANPVA 71
             DL+I N + + D G + C+     +G+  D+   +   V V++PP+ PP+IS P  N + 
Sbjct:   182 DLVIFNVTVQ-DQGNYTCKTTYTYNGKQYDIARDISLIVEVVSPPKMPPEISYPQNNSIE 240

Query:    72 TE-GRAIELVCSTSG 85
              E G  + + C+T+G
Sbjct:   241 VELGSEVTVDCNTTG 255

GO:0004909 "interleukin-1, Type I, activating receptor activity" evidence=IEA

UNIPROTKB|E1BV59 Gga.29966 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 87 (35.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 24/75 (32%), Positives = 42/75 (56%)

Query:    17 DLIISNASFERDNGKFECRLKAAGSGQ--DLHSQV-YTVTVLTPPQ-PPKIS-PGANPVA 71
             DL+I N + + D G + C+     +G+  D+   +   V V++PP+ PP+IS P  N + 
Sbjct:   182 DLVIFNVTVQ-DQGNYTCKTTYTYNGKQYDIARDISLIVEVVSPPKMPPEISYPQNNSIE 240

Query:    72 TE-GRAIELVCSTSG 85
              E G  + + C+T+G
Sbjct:   241 VELGSEVTVDCNTTG 255

GO:0004909 "interleukin-1, Type I, activating receptor activity" evidence=IEA

UNIPROTKB|E1C4V8 JAM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 97 (39.2 bits), Expect = 0.00019, P = 0.00019
 Identities = 26/70 (37%), Positives = 34/70 (48%)

Query:    20 ISNASFERDNGKFECRLKAAGS-GQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIE 78
             I N +  +D+G + C + A    GQ L     T+TVL PP  P I    N   T G  +E
Sbjct:    94 IRNVT-RKDSGTYRCEISAKSEEGQRLGEATITLTVLVPPTTP-ICVVPNSAMT-GTVVE 150

Query:    79 LVCSTSGGSP 88
             L C  + GSP
Sbjct:   151 LSCKEAEGSP 160

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

MGI|MGI:1321398 F11r "F11 receptor" [Mus musculus (taxid:10090)]

 Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
 Identities = 25/67 (37%), Positives = 35/67 (52%)

Query:    27 RDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGG 86
             +DNG++ C +   G GQ+       +TVL PP  P IS  ++ V    RA+ L CS   G
Sbjct:   101 KDNGEYTCMVSEEG-GQNYGEVSIHLTVLVPPSKPTISVPSS-VTIGNRAV-LTCSEHDG 157

Query:    87 SPDPQIS 93
             SP  + S
Sbjct:   158 SPPSEYS 164

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IMP

GO:0007155 "cell adhesion" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030855 "epithelial cell differentiation" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.51
PHA02785	326	IL-beta-binding protein; Provisional	99.27
PHA02826	227	IL-1 receptor-like protein; Provisional	99.22
KOG3513|consensus	1051		99.2
KOG4194|consensus	873		99.11
PHA03376	221	BARF1; Provisional	99.02
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.97
KOG3513|consensus	1051		98.93
KOG4194|consensus	873		98.89
KOG4221|consensus	1381		98.87
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.78
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.77
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.75
KOG4221|consensus	1381		98.75
PHA02785	326	IL-beta-binding protein; Provisional	98.72
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.68
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.67
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.66
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.66
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.65
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.62
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.61
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.6
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.59
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.59
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.58
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.58
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.57
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.56
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.55
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.55
KOG4222|consensus	1281		98.55
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.54
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.53
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.52
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.51
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.5
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.49
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.48
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.47
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.46
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.45
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.45
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.44
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.43
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.43
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.41
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.41
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.4
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.4
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.39
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.38
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.38
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.38
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.37
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.37
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.36
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.36
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.35
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.34
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.33
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.33
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.33
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.32
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.32
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.3
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.3
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.29
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.29
KOG4222|consensus	1281		98.29
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.28
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.28
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.28
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.28
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.27
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.27
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.26
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.26
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.26
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.25
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.24
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.24
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.23
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.23
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.21
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.21
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.2
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.2
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.2
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.18
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.18
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.17
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.17
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.15
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.15
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.14
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.12
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.1
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.1
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.09
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.09
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.06
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.06
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.05
smart00406	81	IGv Immunoglobulin V-Type.	98.03
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.03
PHA03269	566	envelope glycoprotein C; Provisional	98.0
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	97.99
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	97.96
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	97.95
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	97.94
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	97.91
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	97.91
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	97.89
smart00409	86	IG Immunoglobulin.	97.89
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.89
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	97.89
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	97.88
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.88
KOG3515|consensus	741		97.87
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.84
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.83
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.81
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.8
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.78
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.78
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.78
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.76
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.76
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.75
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.75
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	97.75
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	97.73
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	97.71
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	97.69
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.68
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.68
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.67
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	97.66
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.65
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	97.64
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	97.64
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.63
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	97.63
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	97.62
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.61
PHA02633	63	hypothetical protein; Provisional	97.6
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	97.59
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.58
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	97.57
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	97.57
PHA03271	490	envelope glycoprotein C; Provisional	97.57
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.56
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	97.56
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.55
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	97.55
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.54
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	97.53
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	97.53
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	97.52
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	97.5
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	97.49
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	97.49
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	97.49
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	97.48
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.48
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	97.48
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	97.44
PHA02826	227	IL-1 receptor-like protein; Provisional	97.44
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	97.42
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	97.4
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	97.4
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	97.38
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	97.38
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	97.37
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.37
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.36
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	97.34
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.3
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.29
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	97.29
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.28
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.27
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.25
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	97.24
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.23
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	97.22
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.22
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.21
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	97.21
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.16
PHA03273	486	envelope glycoprotein C; Provisional	97.15
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	97.15
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	97.11
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.08
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	97.05
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	97.01
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	96.99
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	96.99
PHA03270	466	envelope glycoprotein C; Provisional	96.98
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	96.94
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	96.85
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	96.77
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	96.75
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	96.72
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	96.69
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	96.69
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	96.66
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.65
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	96.62
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	96.59
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	96.53
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	96.52
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	96.5
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.49
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.46
PF00047	64	ig: Immunoglobulin domain The Prosite family only	96.46
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	96.43
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	96.42
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.38
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	96.34
smart00408	63	IGc2 Immunoglobulin C-2 Type.	96.31
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	96.28
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	96.19
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	96.18
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	96.16
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	96.14
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.13
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	96.01
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	95.96
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	95.89
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	95.81
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	95.78
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	95.75
smart00409	86	IG Immunoglobulin.	95.75
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	95.75
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	95.67
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	95.54
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	95.46
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	95.01
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	94.95
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	94.79
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	94.72
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	94.53
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	94.34
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	94.12
cd05770	93	IgC_beta2m Class I major histocompatibility comple	94.1
KOG3515|consensus	741		93.98
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	93.79
PHA02914	500	Immunoglobulin-like domain protein; Provisional	93.77
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	93.76
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	93.65
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	93.49
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	93.45
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	93.32
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	93.28
PHA02987	189	Ig domain OX-2-like protein; Provisional	93.19
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	93.16
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	93.14
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	93.1
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	92.94
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	92.82
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	92.67
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	91.9
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	91.61
PHA02982	251	hypothetical protein; Provisional	91.27
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	91.17
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	91.01
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	89.62
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	88.44
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	87.96
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	87.67
PHA02914	500	Immunoglobulin-like domain protein; Provisional	85.46
PHA03283	542	envelope glycoprotein E; Provisional	85.16
PF01688	161	Herpes_gI: Alphaherpesvirus glycoprotein I; InterP	84.24
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	83.5
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	82.61
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	81.29
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	80.88
KOG1480|consensus	909		80.8

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.51  E-value=2.9e-13  Score=78.37  Aligned_cols=75  Identities=21%  Similarity=0.399  Sum_probs=57.3

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC-CeEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD-PQISVT   95 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~   95 (98)
                      +|+|.+++.. |+|.|+|.+.+.   .......+.|.|..+|.. .+.. ......+|..+.|+|.+.+.+|. +.+.|+
T Consensus         2 sL~i~~v~~~-D~G~Y~C~~~~~---~~~~~~~~~l~v~~~P~v-~~~~-~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~   75 (139)
T cd05771           2 SLTLPGLTVH-DEGTYICSVSTP---PHQAQQIIQLSVSEPPRV-RLSL-EKLVSMIEEPQTLICHIAGYYPLDVQVEWT   75 (139)
T ss_pred             eEEECCCCHH-HCEEEEEEEEcc---CcceeeEEEEEEecCCce-EEeC-CCceeecCCcEEEEEEECCCCCCCeEEEEE
Confidence            6999999999 999999999863   445666778888876654 3332 22344478889999999877776 589999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus        76 ~~   77 (139)
T cd05771          76 RE   77 (139)
T ss_pred             EC
Confidence            75

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.27  E-value=1.1e-10  Score=76.20  Aligned_cols=79  Identities=18%  Similarity=0.290  Sum_probs=56.4

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCee-eEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC---CeE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDL-HSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD---PQI   92 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~-~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~---~~~   92 (98)
                      .|.|.+++.+ |+|.|+|.+.+..++... .+..+.|.|..+..+|.+.......+..|+.+.|.|.+.+ .|.   +.+
T Consensus       178 ~L~i~~v~~~-d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g-~P~~~~~~v  255 (326)
T PHA02785        178 IITIEDVRKN-DAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSL-RPPTTDADV  255 (326)
T ss_pred             eEEEeecChh-hCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEEC-CCCCCCceE
Confidence            6999999999 999999999986432221 2334456665444556553335567788999999999974 454   589


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       256 ~W~kn  260 (326)
T PHA02785        256 FWISN  260 (326)
T ss_pred             EEEEC
Confidence            99875

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.22  E-value=1.9e-10  Score=71.67  Aligned_cols=71  Identities=18%  Similarity=0.221  Sum_probs=53.4

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCC----CCCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGG----SPDP   90 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~----~p~~   90 (98)
                      ..+|.|.+++.+ |+|.|+|.+.+.   .......+.|.|..++        ....+.+|+.+.|+|.+.++    .|.|
T Consensus        97 ~~~L~I~~v~~~-DsG~Y~C~a~N~---~~~~~~~i~L~V~~~~--------~~~~~~~G~~v~L~C~~~~~~~~~~p~p  164 (227)
T PHA02826         97 SENLWIGNVINI-DEGIYICTISSG---NICEESTIRLTFDSGT--------INYQFNSGKDSKLHCYGTDGISSTFKDY  164 (227)
T ss_pred             CCeEEECCCChH-HCEEEEEEEEEC---CcceEEEEEEEEecCC--------ccceEecCCCEEEEeeCCCCccccCCCc
Confidence            357999999999 999999999995   3344555667764211        22456789999999998654    4578


Q ss_pred             eEEEEec
Q psy5866          91 QISVTLQ   97 (98)
Q Consensus        91 ~~~W~~~   97 (98)
                      ++.|+++
T Consensus       165 ~I~WyKn  171 (227)
T PHA02826        165 TLTWYKN  171 (227)
T ss_pred             eEEEEEC
Confidence            9999986

>KOG3513|consensus

Probab=99.20  E-value=1.3e-10  Score=83.81  Aligned_cols=76  Identities=28%  Similarity=0.480  Sum_probs=62.7

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      ...|.|.+++.+ |+|.|+|.+.|.   .+.......+.|..+|.-  +....+..+..|+++.+.|.+. |.|.|+++|
T Consensus       293 ~~vL~I~nv~~~-D~G~Y~C~AeN~---~G~~~~~~~v~v~a~P~w--~~~~~d~~~~~gs~v~~eC~a~-g~P~p~v~W  365 (1051)
T KOG3513|consen  293 GKVLKIPNVQYE-DAGEYECIAENS---RGSATHSGHVTVYAPPYW--LQKPQDTEADTGSNVTLECKAS-GKPNPTVKW  365 (1051)
T ss_pred             ccEEEecccCcC-CCeEEEEEEecc---cccceeeEEEEEecCchh--hcccceeEecCCCCeEEEEEec-CCCCCceEE
Confidence            346999999999 999999999995   566777788888766653  3233667889999999999996 899999999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       366 lkN  368 (1051)
T KOG3513|consen  366 LKN  368 (1051)
T ss_pred             eeC
Confidence            975

>KOG4194|consensus

Probab=99.11  E-value=5.8e-10  Score=77.01  Aligned_cols=83  Identities=24%  Similarity=0.429  Sum_probs=63.3

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSG   85 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~   85 (98)
                      |+.+.+..+  ..-|.||+++ |.|.|+|.+++.   ++..+..+.|.|+..|.. .+. ..+..+..|+.+.|+|.+. 
T Consensus       661 Rl~Vmpedd--~f~Itnvk~e-D~GiYtC~A~n~---AG~isanAtL~V~e~p~f-~~P-L~~~~V~~get~vlqC~a~-  731 (873)
T KOG4194|consen  661 RLHVMPEDD--VFFITNVKIE-DQGIYTCTAQNV---AGQISANATLTVLETPSF-SIP-LEDQLVVVGETLVLQCLAE-  731 (873)
T ss_pred             eeeecCCCC--EEEEeccccc-ccceeEEeeecc---ccceeeceEEEEecCCcc-ccc-ccceEEEecceEEEEEecC-
Confidence            344444433  4779999999 999999999996   455566788999877654 332 3567899999999999986 


Q ss_pred             CCCC-CeEEEEec
Q psy5866          86 GSPD-PQISVTLQ   97 (98)
Q Consensus        86 ~~p~-~~~~W~~~   97 (98)
                      +.|+ |.+.|+|+
T Consensus       732 ~~~a~pr~~W~k~  744 (873)
T KOG4194|consen  732 GAPADPRLEWFKE  744 (873)
T ss_pred             CCCCCccccccCC
Confidence            5665 99999986

>PHA03376 BARF1; Provisional

Probab=99.02  E-value=7.2e-09  Score=62.44  Aligned_cols=87  Identities=14%  Similarity=0.332  Sum_probs=56.4

Q ss_pred             CceeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEE
Q psy5866           2 DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELV   80 (98)
Q Consensus         2 ~~~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~   80 (98)
                      ++.-++++..+.++++|.|.+++++ |+|.|+|.++....+.   ...-.|++. .|-...+.. ..+..+  .....+.
T Consensus        73 EyRGrtD~~~~~gnvsLvI~~l~lS-DdGtY~C~fQkge~~~---~k~ehLt~V-~~~~Lsv~a~~~dFp~--~~~~~i~  145 (221)
T PHA03376         73 PFRGFFDIHRSANTFFLVVTAANIS-HDGNYLCRMKLGETEV---TKQEHLSVV-KPLTLSVHSERSQFPD--FSVLTVT  145 (221)
T ss_pred             ccccEEEEEecCCeEEEEEEeeeec-CCceEEEEEEcCCCce---eeeeeeeee-ecceEEEEeccccCCC--CCeeEEE
Confidence            3455667766679999999999999 9999999998743222   122234442 222223321 011111  3446899


Q ss_pred             EEcCCCCCCCeEEEEe
Q psy5866          81 CSTSGGSPDPQISVTL   96 (98)
Q Consensus        81 C~~~~~~p~~~~~W~~   96 (98)
                      |. .+|.|.|.++|+.
T Consensus       146 C~-sggfP~P~~~Wle  160 (221)
T PHA03376        146 CT-VNAFPHPHVQWLM  160 (221)
T ss_pred             Ee-cCCcCCchheecc
Confidence            99 5899999999974

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.97  E-value=5.2e-09  Score=57.29  Aligned_cols=52  Identities=19%  Similarity=0.293  Sum_probs=40.7

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP   61 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p   61 (98)
                      ++..........|.|.++... |+|.|+|.+.|.   .+.....+.|.|...|.+|
T Consensus        46 ~~~~~~~~~~s~L~I~~~~~~-D~G~Ytc~a~N~---~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          46 GIKIENTENSSKLTITEGQQE-HCGCYTLEVENK---LGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             cEEEEecCCeeEEEECCCChh-hCEEEEEEEEcC---CCceeEEEEEEEecCCCCC
Confidence            444444455678999999999 999999999996   4556667889998887765

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG3513|consensus

Probab=98.93  E-value=1.8e-08  Score=73.15  Aligned_cols=75  Identities=21%  Similarity=0.275  Sum_probs=57.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCC--CCeEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSP--DPQIS   93 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~   93 (98)
                      .+|.|++++.+ |+|.|+|.|.|.   .+......+|.|..++..  +.......+..|+.+.|.|.+. ..+  .+.+.
T Consensus       479 GtL~I~n~t~~-DaG~YtC~A~N~---~G~a~~~~~L~Vkd~tri--~~~P~~~~v~~g~~v~l~Ce~s-hD~~ld~~f~  551 (1051)
T KOG3513|consen  479 GTLEISNVTRS-DAGKYTCVAENK---LGKAESTGNLIVKDATRI--TLAPSNTDVKVGESVTLTCEAS-HDPSLDITFT  551 (1051)
T ss_pred             CcEEecccCcc-cCcEEEEEEEcc---cCccceEEEEEEecCceE--EeccchhhhccCceEEEEeecc-cCCCcceEEE
Confidence            36999999999 999999999995   567777788888654432  2233556889999999999986 344  45788


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |.++
T Consensus       552 W~~n  555 (1051)
T KOG3513|consen  552 WKKN  555 (1051)
T ss_pred             EEEC
Confidence            9764

>KOG4194|consensus

Probab=98.89  E-value=6.2e-09  Score=72.10  Aligned_cols=75  Identities=25%  Similarity=0.426  Sum_probs=60.7

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      .|++.||... |+|.|+|.+.|+-+  ...+..++|+|...|.....  ..+.+...|+.+.|.|.+. |.|.|.+.|-+
T Consensus       575 ~L~L~nVt~t-d~grYQCVvtN~FG--Stysqk~KltV~~~PsFtkt--P~dltl~tg~mArl~CaAt-G~P~PeIawqk  648 (873)
T KOG4194|consen  575 ILHLDNVTFT-DEGRYQCVVTNHFG--STYSQKAKLTVNQAPSFTKT--PEDLTLRTGQMARLECAAT-GHPRPEIAWQK  648 (873)
T ss_pred             eeeeeeeecc-cCceEEEEEecccC--cchhheeEEEeeccCccccC--cccceeecccceeeeeecc-CCCCcceeehh
Confidence            4899999999 99999999999733  44556678888766664333  3678999999999999996 89999999965


Q ss_pred             c
Q psy5866          97 Q   97 (98)
Q Consensus        97 ~   97 (98)
                      +
T Consensus       649 d  649 (873)
T KOG4194|consen  649 D  649 (873)
T ss_pred             c
Confidence            3

>KOG4221|consensus

Probab=98.87  E-value=8.3e-09  Score=75.37  Aligned_cols=75  Identities=36%  Similarity=0.521  Sum_probs=59.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      .+|.|++++.. |+|.|+|+|.+.   .......+.++|+.+|..  +.........++.++.+.|.+. |.|.|++.|+
T Consensus       291 ~slliS~a~~~-dSg~YtC~Atn~---~D~idasaev~V~a~P~~--~~~p~~l~A~e~~die~ec~~~-g~p~p~v~w~  363 (1381)
T KOG4221|consen  291 SSLLISNATDD-DSGKYTCRATNT---NDSIDASAEVTVLAPPGF--TKAPTTLVAHESMDIEFECPVS-GKPIPTVRWY  363 (1381)
T ss_pred             cceEEeccccc-cCceEEEEecCC---CcccccceEEEEEcCCCC--CCCCcceeeeeccceeEeCCCC-CCCcceEEEE
Confidence            36899999999 999999999984   455566678889877653  2223456777889999999986 7899999999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       364 kN  365 (1381)
T KOG4221|consen  364 KN  365 (1381)
T ss_pred             ec
Confidence            86

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.78  E-value=4.9e-08  Score=52.08  Aligned_cols=41  Identities=32%  Similarity=0.478  Sum_probs=33.3

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ...+|.|.+++.. |+|.|+|.|.+.   .+..+..+.|.|..+|
T Consensus        45 ~~~~L~I~~v~~~-D~G~YtC~A~n~---~g~~~~~~~L~V~~~P   85 (85)
T cd05854          45 TIGDLVIVNAQLS-HAGTYTCTAQTV---VDSASASATLVVRGPP   85 (85)
T ss_pred             eEeEEEEccCChh-hCeEEEEEEecC---CCCEEEEEEEEEECCC
Confidence            3457999999999 999999999996   4566667788887554

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.77  E-value=4.3e-08  Score=52.60  Aligned_cols=42  Identities=31%  Similarity=0.488  Sum_probs=35.0

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP   61 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p   61 (98)
                      .+|.|.++... |+|.|+|.|.|.   .+..+..+.|.|..+|.+|
T Consensus        47 s~L~I~~~~~~-D~G~YtC~A~N~---~G~~~~~~~L~V~~~P~~P   88 (88)
T cd05735          47 STLQILPTVRE-DSGFFSCHAINS---YGEDRGIIQLTVQEPPDPP   88 (88)
T ss_pred             EEEEECCCCcc-cCEEEEEEEEcC---CCcceEEEEEEEeCCCCCC
Confidence            56999999999 999999999996   4556667888888777654

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.75  E-value=2e-08  Score=53.72  Aligned_cols=39  Identities=28%  Similarity=0.497  Sum_probs=33.2

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      .+|.|.+++.. |+|.|+|.|.+.   ....+..+.|.|..||
T Consensus        47 ~~L~I~nv~~~-dsG~YtC~a~n~---~~~~~a~a~L~V~~pP   85 (85)
T cd05853          47 GDLMIRSIQLK-HAGKYVCMVQTS---VDKLSAAADLIVRGPP   85 (85)
T ss_pred             CcEEEecCCHH-HCEEEEEEEEcc---cCceEEEEEEEEecCC
Confidence            36999999999 999999999995   5666777888888765

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>KOG4221|consensus

Probab=98.75  E-value=1.4e-07  Score=69.29  Aligned_cols=85  Identities=27%  Similarity=0.403  Sum_probs=60.9

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC---C-EEeCCCCceecCCCcEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP---P-KISPGANPVATEGRAIELVC   81 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~---p-~i~~~~~~~~~~g~~~~l~C   81 (98)
                      |+-+.+++   .|.|.++..+ |.|.|+|.+.+.+..  -.+..+.|+|..-+..   . ++.......+.+|+++.|.|
T Consensus       186 r~i~lpsG---~L~I~~~qp~-d~g~yrc~vt~g~~~--r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leC  259 (1381)
T KOG4221|consen  186 RVIVLPSG---ALEISGLQPS-DTGEYRCVVTGGASQ--RTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLEC  259 (1381)
T ss_pred             cEEEcCCC---cEEecccccC-CCceEEEEEecCCcC--CccceeEEEecCCcccccceeeecCCCccccccCCcEEEEE
Confidence            44444433   4999999999 999999999985332  2355677777622211   1 23223456899999999999


Q ss_pred             EcCCCCCCCeEEEEec
Q psy5866          82 STSGGSPDPQISVTLQ   97 (98)
Q Consensus        82 ~~~~~~p~~~~~W~~~   97 (98)
                      .+. +.|.|.+.|+++
T Consensus       260 vvs-~~p~p~v~Wlrn  274 (1381)
T KOG4221|consen  260 VVS-GVPKPSVKWLRN  274 (1381)
T ss_pred             Eec-CCCCCceEEeeC
Confidence            985 899999999975

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.72  E-value=1.2e-07  Score=62.05  Aligned_cols=75  Identities=17%  Similarity=0.283  Sum_probs=51.7

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEe-CCCCceecCCCcEEEEEEcC----CCCCCCe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS-PGANPVATEGRAIELVCSTS----GGSPDPQ   91 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~-~~~~~~~~~g~~~~l~C~~~----~~~p~~~   91 (98)
                      .|.|.++..+ |+|.|+|.+.|.   .......+.|.|..... +.+. ......+.+|..+.+.|...    .+.|.+.
T Consensus        83 ~l~i~~~~~~-DsG~Y~C~a~N~---~g~~~~s~~L~V~~~~~-~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~  157 (326)
T PHA02785         83 NMLILNPTQS-DSGIYICITKNE---TYCDMMSLNLTIVSVSE-SNIDLISYPQIVNERSTGEMVCPNINAFIASNVNAD  157 (326)
T ss_pred             eEEEcccCcc-cCeEEEEEEECC---CcceEEEEEEEEEecCC-CccceeeccceecccCcEEEECCChhhcccCCCCce
Confidence            5889999999 999999999985   23344556777764322 1110 11234567899999999621    3568899


Q ss_pred             EEEEe
Q psy5866          92 ISVTL   96 (98)
Q Consensus        92 ~~W~~   96 (98)
                      +.|++
T Consensus       158 i~W~k  162 (326)
T PHA02785        158 IIWSG  162 (326)
T ss_pred             EEEcc
Confidence            99975

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.68  E-value=1.4e-07  Score=48.73  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=32.6

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      .++......+...|.|.++... |+|.|+|.+.|.   .+..+..+.|.
T Consensus        29 ~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~   73 (74)
T cd05748          29 GRVQIETTASSTSLVIKNAERS-DSGKYTLTLKNP---AGEKSATINVK   73 (74)
T ss_pred             CeEEEEECCCeEEEEECCCCcC-cCEEEEEEEECC---CccEEEEEEEE
Confidence            3445544556678999999999 999999999995   34444444443

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.67  E-value=1e-07  Score=50.68  Aligned_cols=40  Identities=33%  Similarity=0.522  Sum_probs=32.6

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ..+|.|.+++.. |+|.|+|.+.+.   ....+..+.|.|..+|
T Consensus        46 ~~~L~I~~v~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~pP   85 (85)
T cd04970          46 NGDLMIRNAQLK-HAGKYTCTAQTV---VDSLSASADLIVRGPP   85 (85)
T ss_pred             cceEEEccCCHH-hCeeeEEEEecC---CCcEEEEEEEEEECCC
Confidence            457999999999 999999999985   4456667888887654

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.66  E-value=1.6e-07  Score=48.99  Aligned_cols=46  Identities=22%  Similarity=0.298  Sum_probs=33.0

Q ss_pred             eEEEEeC-CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           5 EIIDYRP-DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         5 ~~~~~~~-~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .++.+.. ..+..+|.|.++..+ |+|.|+|.+.|.   .+..+..+.|.|
T Consensus        29 ~r~~~~~~~~g~~~L~I~~~~~~-D~G~Y~C~A~N~---~G~~~~~a~L~V   75 (75)
T cd05892          29 DRISLYQDNSGRVTLLIKNVNKK-DAGWYTVSAVNE---AGVATCHARLDV   75 (75)
T ss_pred             CeEEEEEcCCCcEEEEECCCChh-hCEEEEEEEEcC---cCeEEEEEEEeC
Confidence            3555433 345568999999999 999999999996   445555555543

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.66  E-value=2e-07  Score=51.11  Aligned_cols=42  Identities=29%  Similarity=0.423  Sum_probs=31.9

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      +...++.+|+|++++.+ |+|.|.|.+.+-..+.  .+..+.|.|
T Consensus        58 ~~~~~~~sL~I~nv~~s-D~GtY~C~v~~~p~g~--~~~~~~L~V   99 (100)
T cd05888          58 PNPIADGALILRNAVQA-DEGKYKCRVITFPAGN--FEAELVLTV   99 (100)
T ss_pred             CCCCCceEEEEecCccc-cceEEEEEEEeCCCCC--eeeEEEEEe
Confidence            34567889999999999 9999999999853332  355566665

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.65  E-value=1.9e-07  Score=51.24  Aligned_cols=49  Identities=18%  Similarity=0.346  Sum_probs=36.3

Q ss_pred             eeEEEEe-CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           4 VEIIDYR-PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         4 ~~~~~~~-~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +.|+.+. ...++.+|+|++++.+ |+|.|.|.+.+...  +..+..+.|+|+
T Consensus        50 ~~Rv~f~~~~~~daSi~i~nl~~~-D~G~Y~C~v~t~P~--g~~~~~~~L~V~   99 (99)
T cd05886          50 RERVTFKNPSFEDGTISLSRLELE-DEGVYICEFATFPT--GNRESQLNLTVY   99 (99)
T ss_pred             cCcEEEcCCCCCcceEEEcCCccc-cCEEEEEEEEeCCC--CCeEEEEEEEEC
Confidence            3555543 4557789999999999 99999999998432  345666777763

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.62  E-value=2.2e-07  Score=50.70  Aligned_cols=39  Identities=21%  Similarity=0.331  Sum_probs=31.0

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+.   .......+.|+|
T Consensus        61 ~~~~~sL~I~~v~~~-D~G~Y~C~v~~~---~~~~~~~i~l~v   99 (100)
T cd05713          61 AEGSVALRIHNVRAS-DEGLYTCFFQSD---GFYEEATVELKV   99 (100)
T ss_pred             cCCcEEEEEEcCChh-hCEEEEEEEecC---CcEEEEEEEEEE
Confidence            457889999999999 999999999974   344555566665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.61  E-value=2.1e-07  Score=50.74  Aligned_cols=43  Identities=21%  Similarity=0.340  Sum_probs=31.7

Q ss_pred             eEEEEe-CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEE
Q psy5866           5 EIIDYR-PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTV   52 (98)
Q Consensus         5 ~~~~~~-~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l   52 (98)
                      .||... .++..++|+|++++.+ |+|.|+|++..    .+..+..+.+
T Consensus        50 ~Rf~~~~~~~~~~tL~I~~vq~~-D~G~Y~Cqv~t----~p~~~~~~~~   93 (95)
T cd05881          50 SRFQLVNFSSNELRVSLSNVSLS-DEGRYFCQLYT----DPPQEAYTTI   93 (95)
T ss_pred             cCEEEEeCCCCEEEEEECcCCcc-cCEEEEEEEEc----ccCeEEEEEE
Confidence            355433 3577999999999999 99999999987    3444444443

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.60  E-value=1.9e-07  Score=50.88  Aligned_cols=44  Identities=18%  Similarity=0.397  Sum_probs=31.7

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      ++.+....+..+|+|.+++.+ |+|.|+|.+.|..   +.....+.|+
T Consensus        54 r~~v~~~~~~~~L~I~~v~~~-D~G~Y~C~A~N~~---G~~~~~~~l~   97 (98)
T cd05870          54 RIEVKGQHGESSLHIKDVKLS-DSGRYDCEAASRI---GGHQKSMYLD   97 (98)
T ss_pred             eEEEeecCCeeEEEEeeCCcC-CCEEEEEEEeccC---CcceeEEEEe
Confidence            445444445678999999999 9999999999963   3344444544

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.59  E-value=2.3e-07  Score=50.27  Aligned_cols=47  Identities=21%  Similarity=0.363  Sum_probs=33.0

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .++.........+|+|.++..+ |+|.|+|.|.|..+  ......+.|.+
T Consensus        45 ~r~~~~~~g~~~~L~I~~v~~~-D~G~Y~C~A~N~~G--~~~~~~i~l~~   91 (92)
T cd05866          45 QRVVVQKEGVRSRLTIYNANIE-DAGIYRCQATDAKG--QTQEATVVLEI   91 (92)
T ss_pred             CCEEEEeCCCeeEEEEecCChH-HCEEEEEEEEcCCC--cEEEEEEEEEE
Confidence            3455555555678999999999 99999999999633  22244445543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.59  E-value=2.8e-07  Score=50.32  Aligned_cols=47  Identities=19%  Similarity=0.268  Sum_probs=34.6

Q ss_pred             eEEEEe-CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           5 EIIDYR-PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         5 ~~~~~~-~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .|+.+. ...++.+|+|.|++.+ |+|.|+|.+.+...  +.......|+|
T Consensus        48 ~Rv~~~~~~~~d~sl~i~nv~~~-D~G~Y~C~v~tfP~--G~~~~~~~l~~   95 (96)
T cd05887          48 GRVSFKNYSLLDATIMLENVGFS-DIGVYICKAVTFPL--GNTQSSTTVTV   95 (96)
T ss_pred             CcEEEcCCCCCccEEEEeCCCcc-ccEEEEEEEEeCCC--CCeeEEEEEEE
Confidence            455553 4556789999999999 99999999988533  44445556655

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.58  E-value=2.7e-07  Score=52.03  Aligned_cols=30  Identities=30%  Similarity=0.643  Sum_probs=26.7

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      +...++.+|.|.+++.+ |+|.|+|.+.+..
T Consensus        74 ~~~~~daSI~I~nv~~s-D~G~Y~C~v~n~p  103 (116)
T cd05879          74 NPSRKDGSIVIHNLDYT-DNGTFTCDVKNPP  103 (116)
T ss_pred             CCCcCeeEEEEccCCcc-cCEEEEEEEEcCC
Confidence            45678899999999999 9999999999853

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.58  E-value=2e-07  Score=49.64  Aligned_cols=45  Identities=24%  Similarity=0.377  Sum_probs=33.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ++.+....+..+|+|.++..+ |+|.|+|.+.+.   ....+..+.|.|
T Consensus        46 ~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~n~---~g~~~~~~~l~V   90 (90)
T PF07679_consen   46 RYQIESDGGSSSLTIKNVTRE-DAGTYTCVASNS---SGEATASVNLTV   90 (90)
T ss_dssp             SEEEEEETTEEEEEESSESGG-GSEEEEEEEEET---TEEEEEEEEEEE
T ss_pred             eeeeecccceeEEccCCCChh-hCEEEEEEEEEC---CCEEEEEEEEEC
Confidence            344444447889999999999 999999999995   455555555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.57  E-value=3.5e-07  Score=47.69  Aligned_cols=46  Identities=24%  Similarity=0.317  Sum_probs=32.4

Q ss_pred             eEEEEeCCC-CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           5 EIIDYRPDS-GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         5 ~~~~~~~~~-~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .++.+.... +...|.|.++..+ |+|.|+|.+.|.   .+..+..+.|.|
T Consensus        29 ~~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~a~L~V   75 (75)
T cd05893          29 DRVSMHQDNCGYICLLIQGATKE-DAGWYTVSAKNE---AGIVSCTARLDV   75 (75)
T ss_pred             CeEEEEEcCCCEEEEEECCCCHH-HCEEEEEEEEcC---CCEEEEEEEEeC
Confidence            345554332 4447999999999 999999999996   445555555543

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.56  E-value=4.8e-07  Score=50.52  Aligned_cols=46  Identities=17%  Similarity=0.286  Sum_probs=35.1

Q ss_pred             EEEE---eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           6 IIDY---RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         6 ~~~~---~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      |+.+   ....+.++|+|++++.+ |+|.|.|.+...   .......+.|.|.
T Consensus        59 R~~~~~~~~~~~~asL~I~~l~~s-D~G~Y~C~v~~~---~~~~~~~v~l~V~  107 (110)
T cd05878          59 RVSLPNYPENRGDASLEISRLRSS-DSGVYRCEVMHG---IEDEQDTVPLEVT  107 (110)
T ss_pred             eEEeccCCCCCCcEEEEECCCChh-hCEEEEEEEEeC---CCcceEEEEEEEE
Confidence            5554   24567899999999999 999999999874   3455666666664

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.55  E-value=6.8e-07  Score=48.48  Aligned_cols=38  Identities=32%  Similarity=0.451  Sum_probs=29.0

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ++.+|+|.+++.+ |+|.|.|.+....  .+.....+.|.|
T Consensus        60 ~~~sL~I~~v~~~-D~G~Y~C~v~~~~--~g~~~~~~~l~V   97 (98)
T cd05718          60 EDATISISNLRLE-DEGNYICEFATFP--QGNRQKVTTLTV   97 (98)
T ss_pred             CceEEEEccCCcc-cCEEEEEEEEeCC--CCcEEEEEEEEe
Confidence            6789999999999 9999999998642  234445555555

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.55  E-value=3.4e-07  Score=47.91  Aligned_cols=33  Identities=18%  Similarity=0.365  Sum_probs=26.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ++......+...|+|.+++.+ |+|.|+|.+.|.
T Consensus        32 ~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~   64 (78)
T cd05743          32 RVSITSEGGYGTLTIRDVKES-DQGAYTCEAINT   64 (78)
T ss_pred             CEEEEECCCEEEEEECCCChH-HCEEEEEEEEec
Confidence            444444456678999999999 999999999986

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>KOG4222|consensus

Probab=98.55  E-value=1.3e-07  Score=68.96  Aligned_cols=74  Identities=24%  Similarity=0.372  Sum_probs=58.7

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      .|.|.+++.. |+|.|.|.+.|..+..  .+....|+|+.+|..  +.......+.+|..+.+.|.+ .|.|.|+++|.+
T Consensus       188 ~LlIsnvrks-D~GtY~CVatNmvG~R--eS~~A~lsv~e~P~f--~~rp~~~~v~~g~~~~f~c~v-~GdP~P~Vrwkk  261 (1281)
T KOG4222|consen  188 NLLISNVRKS-DEGTYACVATNMVGER--ESIPARLSVQEKPWF--WKRPKDLAVLVGAAAEFDCRV-GGDPQPTVRWKK  261 (1281)
T ss_pred             cEEEeccccC-CCceeeeeeccccccc--ccccceeeeccCCcc--ccccccceeeccccccccccc-CCCCCCceeeec
Confidence            4999999999 9999999999975433  333467888866653  322356789999999999998 589999999976

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.54  E-value=6.3e-07  Score=47.86  Aligned_cols=44  Identities=14%  Similarity=0.145  Sum_probs=31.7

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      ++......+...|.|.++... |+|.|+|.+.|.   .+..+..+.|.
T Consensus        42 r~~~~~~~~~~~L~I~~~~~~-D~G~Y~c~a~N~---~G~~~~~~~l~   85 (86)
T cd05894          42 RVRVESYKDLSSFVIEGAERE-DEGVYTITVTNP---VGEDHASLFVK   85 (86)
T ss_pred             eEEEEEcCCeEEEEECCCccC-cCEEEEEEEEeC---CCcEEEEEEEE
Confidence            455444455678999999999 999999999996   33444444443

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.53  E-value=5.3e-07  Score=49.20  Aligned_cols=43  Identities=21%  Similarity=0.376  Sum_probs=31.4

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      +....+.++|+|++++.+ |+|.|+|.+....  .......+.|.|
T Consensus        54 ~~~~~~~~sL~I~~~~~~-DsG~Y~c~v~~~~--~~~~~~~f~L~v   96 (97)
T cd05775          54 VNFSQNDYSLQISNLKME-DAGSYRAEINTKN--GVTITKEFTLHI   96 (97)
T ss_pred             EEecCCceeEEECCCchH-HCEEEEEEEEcCC--CCeEEEEEEEEe
Confidence            344566789999999999 9999999999853  233344455554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.52  E-value=6e-07  Score=49.55  Aligned_cols=41  Identities=22%  Similarity=0.498  Sum_probs=32.1

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ...++++|+|++++.+ |+|.|+|.+.+.   .......+.|.|.
T Consensus        63 ~~~~~~sL~I~~v~~s-D~G~Y~C~v~~~---~~~~~~~v~L~V~  103 (106)
T cd05714          63 ADPGDASLVITDLRLE-DSGRYRCEVIDG---IEDEQDTVELEVR  103 (106)
T ss_pred             CCCCcceEEECCCCHH-HCEEEEEEEEcC---CCceEEEEEEEEE
Confidence            4567899999999999 999999999873   3444555666653

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.51  E-value=7.1e-07  Score=48.24  Aligned_cols=43  Identities=16%  Similarity=0.276  Sum_probs=30.7

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      +..........|+|.+++.+ |+|.|+|.+.|..   +..+..+.|.
T Consensus        53 ~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~~---G~~~~s~~l~   95 (96)
T cd05732          53 IVVRGHARVSSLTLKDVQLT-DAGRYDCEASNRI---GGDQQSMYLE   95 (96)
T ss_pred             EEEeCCccEEEEEECcCCcC-cCEEeEEEEEeCC---CCcEEEEEEe
Confidence            33333445678999999999 9999999999963   3344444444

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.50  E-value=1e-06  Score=46.83  Aligned_cols=40  Identities=25%  Similarity=0.384  Sum_probs=30.4

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ...+|+|.+++.+ |+|.|.|.+.+... ....+..+.|+|+
T Consensus        44 ~~s~L~I~~~~~~-DsG~Y~C~a~n~~~-~~~~~~sv~i~V~   83 (84)
T cd05861          44 LRSTLTFPHATVE-DSGTYECAAHESTQ-DQKAFKKVNITVH   83 (84)
T ss_pred             EEEEEEECCCCcC-CCEEEEEEEEECcc-CcceeEEEEEEEe
Confidence            3568999999999 99999999987522 1244666777765

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.49  E-value=5.6e-07  Score=50.48  Aligned_cols=45  Identities=18%  Similarity=0.274  Sum_probs=32.6

Q ss_pred             EEEEeC---CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           6 IIDYRP---DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         6 ~~~~~~---~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      |+.+..   ..++++|+|++++.+ |+|.|+|.+..   +....+..+.|.|
T Consensus        61 R~sl~~~~~~~~~asL~I~nl~~s-DsG~Y~C~V~~---g~~~~~~~v~l~v  108 (112)
T cd05900          61 RVSLPNYPAIPSDATLEITELRSN-DSGTYRCEVMH---GIEDNYDTVEVQV  108 (112)
T ss_pred             eEEecccCCCCCCcEEEEeecccc-cCEEEEEEEec---CCCCceeEEEEEE
Confidence            555543   568899999999999 99999999985   2334444444444

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.48  E-value=9.8e-07  Score=48.19  Aligned_cols=46  Identities=22%  Similarity=0.224  Sum_probs=32.4

Q ss_pred             eEEEEeC-CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           5 EIIDYRP-DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         5 ~~~~~~~-~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .|+.+.. ...+.+|+|.|++.+ |+|.|+|.+.+.    +..+....+.|.
T Consensus        48 ~Rv~f~~~~~~d~sI~i~nvt~~-D~G~Y~C~~~t~----P~g~~~~~i~~~   94 (96)
T cd05889          48 GRVYFLNSTREDMSLSFNNATEE-DVGLYCCSLVTY----PQGSWEKVIEVV   94 (96)
T ss_pred             CeEEEecCCCCccEEEEcCCCcc-cCEEEEEEEEeC----CCCCeEEEEEEE
Confidence            4555542 235788999999999 999999999984    333444455543

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.47  E-value=6.7e-07  Score=48.71  Aligned_cols=26  Identities=23%  Similarity=0.503  Sum_probs=23.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+.++|+|+++..+ |+|.|+|.+..
T Consensus        58 ~~~~~~L~I~nV~~~-D~G~YtC~~~t   83 (95)
T cd05882          58 TPTELIISISNVQLS-DEGEYTCSIFT   83 (95)
T ss_pred             CCceEEEEECCCCcc-cCEEEEEEEEe
Confidence            345789999999999 99999999987

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.46  E-value=8.9e-07  Score=48.16  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=26.3

Q ss_pred             EEEE-eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDY-RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~-~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+.+ ....+.++|+|.+++.+ |+|.|+|.+.+.
T Consensus        51 r~~~~~~~~~~~sL~I~~v~~~-DsG~Y~C~~~t~   84 (95)
T cd07701          51 RIELVRASWHELSISISDVSLS-DEGQYTCSLFTM   84 (95)
T ss_pred             CEEEEECCCCcEEEEECcCCcc-cCEEEEEEeEee
Confidence            4443 33456789999999999 999999999984

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.45  E-value=1.1e-06  Score=49.16  Aligned_cols=47  Identities=13%  Similarity=0.296  Sum_probs=35.8

Q ss_pred             eEEEEe---CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           5 EIIDYR---PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         5 ~~~~~~---~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      -|+.+.   ...++.+|+|.+++.+ |+|.|.|.+...   ....+..+.|.|.
T Consensus        58 gRvsl~~~~~~~~~asL~i~nv~~~-D~G~Y~C~v~~g---~~~~~~~v~L~V~  107 (110)
T cd05902          58 GRVSLPGYPKNRYNASLVLSRLRYS-DSGTYRCEVVLG---INDEQDTVPLEVT  107 (110)
T ss_pred             cEEEeecCCCCCceEEEEECCCCHH-HCEEEEEEEEEC---CcccEEEEEEEEE
Confidence            455553   3457899999999999 999999999972   4566666777664

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.45  E-value=1.1e-06  Score=44.85  Aligned_cols=38  Identities=11%  Similarity=0.142  Sum_probs=28.4

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ....|.|.++..+ |+|.|+|.+.|.   .+..+..+.+.|+
T Consensus        29 ~~~~L~i~~v~~~-D~G~YtC~a~N~---~g~~~~~~~~~l~   66 (67)
T cd05863          29 SQHSLQIKDVTEA-SAGTYTLVLWNS---AAGLEKRISLELI   66 (67)
T ss_pred             CcCEEEECCCCHH-HCEEEEEEEEEC---CccEEEEEEEEEE
Confidence            3457999999999 999999999985   3444444555543

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.44  E-value=8.5e-07  Score=48.01  Aligned_cols=27  Identities=30%  Similarity=0.635  Sum_probs=23.8

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+.
T Consensus        58 ~~~~~~L~I~~v~~~-DsG~Y~C~~~~~   84 (95)
T cd05717          58 SANELSISISNVSLS-DEGRYTCSLYTM   84 (95)
T ss_pred             CCCeeEEEEccCCcc-cCEEEEEEEecC
Confidence            445789999999999 999999999874

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.43  E-value=1.3e-06  Score=45.40  Aligned_cols=37  Identities=27%  Similarity=0.287  Sum_probs=28.7

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      .+..+|.|.+++.. |+|.|+|.+.|.   .+..+..+.|.
T Consensus        38 ~~~~~L~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~   74 (75)
T cd05744          38 CGRICLLIQNANKE-DAGWYTVSAVNE---AGVVSCNARLD   74 (75)
T ss_pred             CCeEEEEECCCCcc-cCEEEEEEEEcC---CCcEEEEEEEe
Confidence            45668999999999 999999999996   34444445554

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.43  E-value=1.5e-06  Score=45.00  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=27.6

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|
T Consensus        41 ~L~I~~~~~~-D~G~Y~C~A~N~---~G~~~~~~~l~V   74 (75)
T cd05763          41 VFFIVDVKIE-DTGVYSCTAQNT---AGSISANATLTV   74 (75)
T ss_pred             EEEEeeCCcc-cCEEEEEEEEcC---CCEEEeeEEEEE
Confidence            6999999999 999999999985   345555666665

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.41  E-value=1.3e-06  Score=49.12  Aligned_cols=30  Identities=30%  Similarity=0.659  Sum_probs=25.9

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      +...++++|+|.+++.+ |+|.|.|.+.+..
T Consensus        74 ~~~~~~~sL~I~~v~~~-D~G~Y~C~v~~~~  103 (116)
T cd05715          74 NPSRKDASIVIHNLQFT-DNGTYTCDVKNPP  103 (116)
T ss_pred             CCcCCeeEEEEeeCCcc-cCEEEEEEEEeCC
Confidence            34566799999999999 9999999999853

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.41  E-value=1.9e-06  Score=46.93  Aligned_cols=42  Identities=21%  Similarity=0.320  Sum_probs=32.3

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ....+..+|+|++++.+ |+|.|.|.+....  ....+..+.|+|
T Consensus        55 ~~~~~~~sL~I~nv~~~-D~G~Y~C~~~~~p--~g~~~~~~~L~v   96 (97)
T cd05846          55 SLGLNSTSITIWNVTLE-DEGCYKCIFNTFP--DGSKSGTMCLTV   96 (97)
T ss_pred             CCCCCccEEEEeCCcee-eeEEEEEEEEeCC--CCCeeeEEEEEE
Confidence            34456789999999999 9999999998753  244555566766

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.40  E-value=1.4e-06  Score=46.97  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=22.6

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +..+|.|.+++.+ |+|.|+|.+.|.
T Consensus        56 ~~~~L~I~~v~~~-D~G~Y~C~a~N~   80 (92)
T cd05737          56 KYASLTIKGVSSE-DSGKYGIVVKNK   80 (92)
T ss_pred             CEEEEEEccCChh-hCEEEEEEEEEC
Confidence            3568999999999 999999999995

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.40  E-value=7.2e-07  Score=47.89  Aligned_cols=35  Identities=26%  Similarity=0.421  Sum_probs=28.3

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..|.|.+++.+ |+|.|+|.+.|.   .+.....+.|.|
T Consensus        55 ~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~a~L~V   89 (90)
T cd05858          55 EVLYLRNVTFE-DAGEYTCLAGNS---IGISHHSAWLTV   89 (90)
T ss_pred             eEEEEccCCHH-HCEEEEEEEEeC---CCcccceEEEEE
Confidence            57999999999 999999999996   344555566665

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.39  E-value=1.3e-06  Score=45.27  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=26.2

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      +|.|.+++.+ |+|.|+|.+.|.   .+.....+.|.
T Consensus        40 ~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~l~   72 (73)
T cd05852          40 SLEILNITKL-DEGSYTCFAENN---RGKANSTGVLS   72 (73)
T ss_pred             EEEECcCChh-HCEEEEEEEECC---CCceeEEEEEE
Confidence            6999999999 999999999996   34444455554

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.38  E-value=2e-06  Score=47.38  Aligned_cols=45  Identities=20%  Similarity=0.356  Sum_probs=32.5

Q ss_pred             EEEEeC-CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           6 IIDYRP-DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         6 ~~~~~~-~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      |+.+.. ..+..+|+|.+++.+ |+|.|.|.+.+.   .......+.|.|
T Consensus        57 R~~~~~~~~~~~sL~I~~v~~~-DsG~Y~C~v~~~---~~~~~~~~~l~v  102 (106)
T cd05877          57 RVFLRRAHDLDASLVITDLRLE-DYGRYRCEVIDG---LEDESVVVALRL  102 (106)
T ss_pred             cEEecCCCCCcEEEEEccCChH-HCEEEEEEEEec---ccceEEEEEEEE
Confidence            444432 255789999999999 999999999762   444555566655

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.38  E-value=2e-06  Score=46.77  Aligned_cols=36  Identities=17%  Similarity=0.283  Sum_probs=27.2

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      ....|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.
T Consensus        61 ~~~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~l~   96 (97)
T cd05869          61 RVSSLTLKYIQYT-DAGEYLCTASNT---IGQDSQSMYLE   96 (97)
T ss_pred             cEEEEEEecCccC-cCEEEEEEEecC---CCCeeEEEEEE
Confidence            3457999999999 999999999996   34444444444

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.38  E-value=2.5e-06  Score=48.13  Aligned_cols=41  Identities=20%  Similarity=0.331  Sum_probs=31.8

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ...++.+|+|.+++.+ |+|.|.|.+...   .......+.|.|.
T Consensus        74 ~~~g~asL~i~~v~~s-D~G~Y~C~V~~g---~~~~~~~v~L~V~  114 (117)
T cd05901          74 EDQGDASLTIVKLRAS-DAGVYRCEVMHG---IEDTQDTVSLDVS  114 (117)
T ss_pred             CcCCceEEEEcccccc-cCEEEEEEEEEC---CcccEEEEEEEEE
Confidence            3457899999999999 999999999873   4455555666653

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.37  E-value=1.6e-06  Score=48.72  Aligned_cols=30  Identities=20%  Similarity=0.337  Sum_probs=26.1

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      +...++.+|+|.+++++ |+|.|.|.+.+..
T Consensus        73 ~~~~~~~sL~I~~v~~~-D~G~Y~C~v~~~~  102 (115)
T cd05880          73 NIMRRDASILIWQLQPT-DNGTYTCQVKNPP  102 (115)
T ss_pred             CCcCCceEEEEeeCChh-hCEEEEEEEEeCC
Confidence            34567889999999999 9999999999853

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.37  E-value=1.9e-06  Score=46.98  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=28.9

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..+|.|.+++.+ |+|.|+|.|.|..+  ...+..+.|.|
T Consensus        59 ~~~L~I~~v~~~-D~G~YtC~A~N~~~--g~~~~s~~l~v   95 (96)
T cd05865          59 SSTLTIYNANID-DAGIYKCVVSNEDE--GESEATVNVKI   95 (96)
T ss_pred             ceEEEEeccChh-hCEEEEEEEEcCCC--CcEEEEEEEEE
Confidence            467999999999 99999999999632  44455556655

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.36  E-value=8.1e-07  Score=45.28  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=26.0

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      .+|+|.+++.+ |+|.|+|.+.|.   .+..+..+.|.
T Consensus        35 ~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~   68 (69)
T cd05725          35 KSLKIRNVTAG-DEGSYTCEAENM---VGKIEASASLT   68 (69)
T ss_pred             CEEEECcCChh-HCEEEEEEEEcC---CCcEEEEEEEE
Confidence            46999999999 999999999985   33344444444

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.36  E-value=1.4e-06  Score=44.82  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=27.4

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..+|.|.++..+ |+|.|+|.+.|.   .+..+..+.+.|+
T Consensus        34 ~~~L~I~~v~~~-D~G~YtC~a~N~---~g~~~~~~~~~~~   70 (71)
T cd04976          34 GHSLTIKDVTEE-DAGNYTVVLTNK---QAKLEKRLTFTLV   70 (71)
T ss_pred             CCEEEECcCCHH-HCEEEEEEEEcC---CccEEEEEEEEEE
Confidence            357999999999 999999999985   3333444445443

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.35  E-value=6.8e-07  Score=48.02  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=28.3

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ...|.|.+++.+ |+|.|+|.|.|.   .+.....+.|.|
T Consensus        54 ~~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~sa~L~V   89 (90)
T cd04974          54 SEVLYLRNVSFD-DAGEYTCLAGNS---IGPSHHSAWLTV   89 (90)
T ss_pred             cceEEEeccccc-cCcEEEEEeecc---cCcccCCEEEEe
Confidence            357999999999 999999999996   344455566665

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.34  E-value=3.5e-06  Score=45.15  Aligned_cols=36  Identities=22%  Similarity=0.233  Sum_probs=29.2

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      +|+|.+++.+ |+|.|+|.+.|.   .+.....+.|.|..
T Consensus        48 ~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~~   83 (90)
T cd05726          48 DLTITNVQRS-DVGYYICQTLNV---AGSILTKAYLEVTD   83 (90)
T ss_pred             eEEEeeCChh-hCEEEEEEEEcC---CCceEEEEEEEEee
Confidence            6999999999 999999999996   34455567777753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.33  E-value=1.6e-06  Score=44.53  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=27.9

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..+|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|
T Consensus        35 ~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V   70 (71)
T cd05876          35 NKTLQLDNVLES-DDGEYVCTAENS---EGSARHHYTVTV   70 (71)
T ss_pred             CCEEEEcccCHH-hCEEEEEEEEcC---CCeEEEEEEEEE
Confidence            457999999999 999999999996   344455555554

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.33  E-value=1.5e-06  Score=45.46  Aligned_cols=34  Identities=24%  Similarity=0.442  Sum_probs=27.0

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      .+|.|.+++.+ |+|.|+|.+.|.   .+.....+.|.
T Consensus        47 ~~L~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~   80 (81)
T cd05765          47 GQLVIYNAQPQ-DAGLYTCTARNS---GGLLRANFPLS   80 (81)
T ss_pred             cEEEEccCCcc-cCEEEEEEEecC---CceEEEEEEEe
Confidence            57999999999 999999999995   34455555554

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.33  E-value=1.8e-06  Score=45.66  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=27.9

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ...+|+|.+++.+ |+|.|+|.+.+.   ....+.+..+.|
T Consensus        47 ~~s~L~I~~v~~~-DsG~Y~C~a~n~---~~~~~~s~~v~v   83 (84)
T cd05742          47 LSSTLTIPNATLK-DSGTYTCAASSG---TMDQKESTKVNI   83 (84)
T ss_pred             EEEEEEECCCChh-hCEEEEEEEccC---CCceEEEEEEEE
Confidence            3567999999999 999999999985   334444455544

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.32  E-value=4.2e-06  Score=45.15  Aligned_cols=27  Identities=41%  Similarity=0.588  Sum_probs=23.7

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .....+|+|.+++.+ |+|.|+|.+.|.
T Consensus        53 ~~~~~~L~I~~v~~~-D~G~Y~C~A~N~   79 (92)
T cd04977          53 DDVRSTLTIYNANIE-DAGIYKCVATDA   79 (92)
T ss_pred             CCCEEEEEEecCCcc-cCEEEEEEEEcC
Confidence            345568999999999 999999999995

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.32  E-value=4.3e-07  Score=49.40  Aligned_cols=27  Identities=33%  Similarity=0.710  Sum_probs=24.6

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..+.++|+|++++.+ |+|.|.|.+.+.
T Consensus        61 ~~g~~~L~I~~l~~s-DsgtY~C~v~~~   87 (94)
T cd07690          61 DQGSFPLIIKNLKIE-DSDTYICEVEDK   87 (94)
T ss_pred             CCCeEEEEECCCCHH-HCEEEEEEECCc
Confidence            567899999999999 999999999874

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.30  E-value=3.5e-06  Score=45.32  Aligned_cols=33  Identities=12%  Similarity=0.214  Sum_probs=26.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ++.+.......+|.|.++..+ |+|.|+|.+.|.
T Consensus        49 ~~~~~~~~~~~~L~i~~~~~~-D~G~Y~C~a~N~   81 (92)
T cd05747          49 RHQITSTEYKSTFEISKVQMS-DEGNYTVVVENS   81 (92)
T ss_pred             cEEEEEcCCeeEEEECCCCcc-cCEeEEEEEEcC
Confidence            344444444578999999999 999999999985

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.30  E-value=1.3e-06  Score=45.13  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=26.5

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      .+|+|.+++.+ |+|.|+|.+.|.   .+..+..+.|.
T Consensus        40 ~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~L~   73 (74)
T cd05745          40 GTLRISRVALH-DQGQYECQAVNI---VGSQRTVAQLT   73 (74)
T ss_pred             CeEEEeeCCHH-hCEEEEEEEEeC---CCceeEEEEEe
Confidence            37999999999 999999999995   34444445554

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.29  E-value=6.4e-06  Score=45.23  Aligned_cols=46  Identities=17%  Similarity=0.320  Sum_probs=33.4

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .+..+...++++|+|.+++.+ |+|.|.|.+...  ..........|.|
T Consensus        69 ~~~~~~~~~~~sL~i~~l~~~-DsG~Y~C~v~~~--~~~~~~~~~~L~V  114 (114)
T PF07686_consen   69 TFSGNGSQNNFSLTIKNLQPS-DSGTYFCQVSTS--NEQSFGNGTKLTV  114 (114)
T ss_dssp             EEEEETTTTEEEEEESSESGG-GEEEEEEEEEES--SEEEEEEEEEEEE
T ss_pred             eeeecccCCeEEEEECCCCcC-cCEEEEEEEEEC--CCCEECCcEEEEC
Confidence            344556678999999999999 999999999984  1244444444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.29  E-value=3.6e-06  Score=45.43  Aligned_cols=36  Identities=11%  Similarity=0.233  Sum_probs=29.5

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..|+|.+++.. |+|.|+|.+.|.   .+.....+.|.|+
T Consensus        58 ~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~L~V~   93 (95)
T cd05730          58 SEMTILDVDKL-DEAEYTCIAENK---AGEQEAEIHLKVF   93 (95)
T ss_pred             CEEEECCCChh-hCEEEEEEEEcC---CCeEEEEEEEEEE
Confidence            36999999999 999999999996   4455666777775

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>KOG4222|consensus

Probab=98.29  E-value=1.6e-06  Score=63.59  Aligned_cols=75  Identities=23%  Similarity=0.347  Sum_probs=60.5

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      .+|+|.++... |+|.|.|.+.+.   .+..+....++|+++|..- ..+ .+..+..|..++|.|.+. |.|.|.+.|.
T Consensus       278 qtl~i~r~tp~-deg~y~C~a~n~---vG~l~asa~ltV~apP~f~-kkp-~dq~v~lg~~vt~pc~~~-gnP~PavfW~  350 (1281)
T KOG4222|consen  278 QTLRIDRVTPT-DEGTYVCPAENL---VGGLEASATLTVQAPPSFG-KKP-RDQKVALGGTVTFPCETL-GNPPPAVFWL  350 (1281)
T ss_pred             ccccccccCCC-cccceeeecccc---ccccccccceEEecCcccc-ccc-CccccccCceEEeeeecC-CCCCcceEEe
Confidence            57999999999 999999999986   5666777889998777642 222 345677888999999986 7899999997


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      +.
T Consensus       351 ke  352 (1281)
T KOG4222|consen  351 KE  352 (1281)
T ss_pred             cc
Confidence            63

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.28  E-value=5.7e-06  Score=42.88  Aligned_cols=27  Identities=33%  Similarity=0.567  Sum_probs=23.5

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      ....+|.|.++... |+|.|+|.+.+..
T Consensus        41 ~~~~~L~I~~~~~~-DsG~Y~C~a~N~~   67 (76)
T cd05895          41 KKSSELQISKASLA-DNGEYKCMVSSKL   67 (76)
T ss_pred             CcEEEEEECcCCcc-cCEEEEEEEEeCC
Confidence            34567999999999 9999999999963

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.28  E-value=2.7e-06  Score=45.36  Aligned_cols=36  Identities=28%  Similarity=0.439  Sum_probs=28.2

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ...|+|.+++.+ |+|.|.|.+.|.   .+.....+.|.|
T Consensus        52 ~~~L~i~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V   87 (88)
T cd04968          52 GAVLKIPNIQFE-DEGTYECEAENI---KGKDTHQGRIYV   87 (88)
T ss_pred             CCEEEECCCCcc-cCEEEEEEEEEC---CCcEEEEEEEEE
Confidence            357999999999 999999999996   344455566655

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.28  E-value=4.3e-06  Score=44.75  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=21.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ++|+|.+++.+ |+|.|+|++...
T Consensus        57 ~sL~I~~l~~~-DsG~Y~c~v~~~   79 (92)
T cd05741          57 GSLLIQNLTKE-DSGTYTLQIIST   79 (92)
T ss_pred             ceEEEccCCch-hcEEEEEEEEcC
Confidence            78999999999 999999999985

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.28  E-value=3.2e-06  Score=44.11  Aligned_cols=37  Identities=24%  Similarity=0.340  Sum_probs=26.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..|.|.+++.+ |+|.|+|.+.|..+ ....+..+.|.|
T Consensus        38 ~~L~I~~~~~~-D~G~Y~C~a~N~~G-~~~s~~~~~l~v   74 (77)
T cd05760          38 RTLTLRSAGPD-DSGLYYCCAHNAFG-SVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEeeCCcc-cCEEEEEEEEeCCC-eEeeCceEEEEE
Confidence            47999999999 99999999999532 122233455554

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.27  E-value=1.8e-06  Score=44.50  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=26.3

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      +|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.
T Consensus        40 ~L~i~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~   72 (73)
T cd04969          40 SLEILNVTKS-DEGKYTCFAENF---FGKANSTGSLS   72 (73)
T ss_pred             eEEEccCChh-HCEEEEEEEECC---CCceEEEEEEE
Confidence            6999999999 999999999995   34455555554

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.27  E-value=2.8e-06  Score=43.28  Aligned_cols=36  Identities=31%  Similarity=0.448  Sum_probs=27.2

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ...|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|
T Consensus        35 ~~~L~i~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V   70 (71)
T cd05731          35 NKTLKIDNVSEE-DDGEYRCTASNS---LGSARHTISVTV   70 (71)
T ss_pred             CCEEEECCCCHH-HCEEEEEEEEeC---CceEEEEEEEEE
Confidence            347999999999 999999999995   344444455543

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.26  E-value=3.3e-06  Score=46.46  Aligned_cols=37  Identities=11%  Similarity=0.126  Sum_probs=29.6

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ...|.|.++..+ |+|.|+|.|.|.   .+..+..+.|.|.
T Consensus        64 ~~~L~i~~v~~~-D~G~Ytc~A~N~---~G~~~~t~~L~V~  100 (101)
T cd04975          64 VSELKLVRLKES-EAGTYTFLASNS---DASKSLTFELYVN  100 (101)
T ss_pred             EEEEEEeecCHh-hCeeEEEEEECC---CccEEEEEEEEEE
Confidence            356999999999 999999999996   4555666666664

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.26  E-value=3.4e-06  Score=43.40  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=21.4

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..|.|.++..+ |+|.|+|.+.|.
T Consensus        34 ~~L~I~~v~~~-D~G~YtC~a~N~   56 (70)
T cd05864          34 VHLTIYEVTEK-DAGNYTVVLTNP   56 (70)
T ss_pred             CEEEECcCCHH-HCEEEEEEEEEC
Confidence            46999999999 999999999996

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.26  E-value=4.9e-06  Score=43.92  Aligned_cols=36  Identities=17%  Similarity=0.435  Sum_probs=28.1

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      +.++|.|.++... |+|.|+|.+.|.   .+.....+.|.
T Consensus        49 ~~~~l~i~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~   84 (85)
T cd05857          49 QHWSLIMESVVPS-DKGNYTCVVENE---YGSINHTYHLD   84 (85)
T ss_pred             CceEEEEccCCcc-cCEEEEEEEEeC---CCEEEEEEEEE
Confidence            4567999999999 999999999995   34455555554

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.25  E-value=3.3e-06  Score=43.88  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=27.2

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .+|.|.+++.+ |+|.|+|.+.|.   .+.....+.|.|
T Consensus        41 ~~L~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V   75 (76)
T cd05867          41 GALILTDVQPS-DTAVYQCEARNR---HGNLLANAHVHV   75 (76)
T ss_pred             CEEEECCCChh-hCEEEEEEEECC---CCeEEEEEEEEE
Confidence            36999999999 999999999985   344444555555

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.24  E-value=3.6e-06  Score=45.40  Aligned_cols=37  Identities=24%  Similarity=0.485  Sum_probs=27.8

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..+|+|.+++.+ |+|.|.|.+.|..+  ...+..+.|.|
T Consensus        54 ~~~L~I~~v~~~-D~G~Y~C~a~N~~G--~~~S~~~~L~V   90 (91)
T cd05740          54 NRTLTFNNVTRS-DTGHYQCEASNEVS--NMTSDPYILNV   90 (91)
T ss_pred             CCEEEECcCChh-hCEEEEEEEEcCCC--CEEeeeEEEEe
Confidence            347999999999 99999999999632  23444555554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.24  E-value=3.7e-06  Score=45.02  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=27.1

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..|.|.+++.+ |+|.|+|.+.|.   .+.....+.|.|
T Consensus        53 ~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~l~V   87 (88)
T cd05851          53 AVLKIFNIQPE-DEGTYECEAENI---KGKDKHQARVYV   87 (88)
T ss_pred             CEEEECcCChh-hCEEEEEEEEcC---CCceEEEEEEEE
Confidence            36999999999 999999999996   344444555554

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.23  E-value=3.6e-06  Score=46.30  Aligned_cols=36  Identities=17%  Similarity=0.278  Sum_probs=29.3

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .+|+|.++..+ |+|.|+|.|.|.   .+..+..+.|.|.
T Consensus        65 s~L~I~~v~~~-D~G~Ytc~A~N~---~g~~~~t~~l~V~  100 (101)
T cd05859          65 SKLKLIRAKEE-DSGLYTALAQNE---DAVKSYTFALQIQ  100 (101)
T ss_pred             cEEEEeeCCHH-HCEEEEEEEEcC---CceEEEEEEEEEE
Confidence            47999999999 999999999996   4556666666664

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.23  E-value=5.4e-06  Score=44.71  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             eEEEEEccceeeccCeEEEEEEEEC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..+|.|.+++.+ |+|.|+|.+.|.
T Consensus        57 ~~~L~I~~~~~~-D~G~Y~C~a~N~   80 (92)
T cd05891          57 YASLTIKGVTSE-DSGKYSINVKNK   80 (92)
T ss_pred             EEEEEECCCChh-hCEEEEEEEEeC
Confidence            357999999999 999999999985

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.21  E-value=4.1e-06  Score=43.26  Aligned_cols=35  Identities=23%  Similarity=0.273  Sum_probs=27.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..|.|.+++.. |+|.|+|.+.|.   .+.....+.|.|
T Consensus        41 ~~L~i~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~l~V   75 (76)
T cd04978          41 GTLILSNVQPN-DTAVYQCNASNV---HGYLLANAFVHV   75 (76)
T ss_pred             CEEEECCCChh-hCEEEEEEEEcc---CCeEEEeEEEEE
Confidence            46999999999 999999999985   344555566665

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.21  E-value=3.8e-06  Score=43.82  Aligned_cols=26  Identities=27%  Similarity=0.602  Sum_probs=23.0

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .+..+|.|.+++.+ |+|.|+|.+.+.
T Consensus        45 ~~~~~L~i~~v~~~-D~G~Y~C~a~N~   70 (82)
T cd05856          45 KKKWTLSLKNLKPE-DSGKYTCHVSNR   70 (82)
T ss_pred             CceEEEEEccCChh-hCEEEEEEEEcC
Confidence            34578999999999 999999999985

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.20  E-value=6e-06  Score=42.10  Aligned_cols=23  Identities=26%  Similarity=0.547  Sum_probs=21.2

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..|.|.+++.. |+|.|+|.+.|.
T Consensus        36 ~~L~I~~~~~~-D~G~Y~C~a~N~   58 (69)
T cd05746          36 GYLAIRDVGVA-DQGRYECVARNT   58 (69)
T ss_pred             CEEEECcCChh-hCEEEEEEEECC
Confidence            36999999999 999999999985

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.20  E-value=9.3e-06  Score=44.79  Aligned_cols=29  Identities=24%  Similarity=0.356  Sum_probs=25.4

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        64 ~~~~~~~~L~I~~~~~~-DsG~Y~C~~~~~   92 (109)
T cd04983          64 DKSRKSSSLHISAAQLS-DSAVYFCALSES   92 (109)
T ss_pred             cccCCEEEEEECCCCHH-HCEEEEEEEecC
Confidence            34568999999999999 999999999864

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.20  E-value=1e-05  Score=43.35  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=27.8

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      .....|+|.++... |.|.|+|.+.|.   .+.....+.|+
T Consensus        53 ~~~~~L~I~~v~~~-D~g~Y~C~A~N~---~G~~~~~~~L~   89 (90)
T cd04972          53 VDIYNLQLSNITSE-TQTTVTCTAENP---VGQANVSVQVT   89 (90)
T ss_pred             CCEEEEEEecCCcc-cCEEEEEEEECC---CCceeEEEEEe
Confidence            33568999999999 999999999986   33444445554

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.18  E-value=1e-05  Score=41.44  Aligned_cols=33  Identities=12%  Similarity=0.166  Sum_probs=25.5

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      .|.|.+++.+ |+|.|+|.+.|.   .+.....+.|.
T Consensus        38 ~l~i~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~L~   70 (71)
T cd05723          38 NLQVLGLVKS-DEGFYQCIAEND---VGNVQASAQLI   70 (71)
T ss_pred             CEEEEcCCcc-cCEEEEEEEEcC---CCEEEEEEEEE
Confidence            4888899999 999999999995   34455555554

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.18  E-value=5.4e-06  Score=42.95  Aligned_cols=35  Identities=29%  Similarity=0.546  Sum_probs=27.6

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..|.|.++... |.|.|+|.+.+.   .+.....+.|.|
T Consensus        39 ~~l~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V   73 (76)
T cd05736          39 SELHISNVRYE-DTGAYTCIAKNE---AGVDEDISSLFV   73 (76)
T ss_pred             CEEEECcCCcc-cCEEEEEEEEcC---CCCcceEEEEEE
Confidence            46999999999 999999999985   344455556655

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.17  E-value=5.7e-06  Score=43.05  Aligned_cols=34  Identities=15%  Similarity=0.197  Sum_probs=27.9

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .|.|.+++.. |+|.|+|.+.|.   .+.....+.|.|
T Consensus        42 ~l~i~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~l~v   75 (76)
T cd05868          42 TIIFSKVQER-SSAVYQCNASNE---YGYLLANAFVNV   75 (76)
T ss_pred             EEEECCCCHh-hCEEEEEEEEcC---CCEEEEEEEEEe
Confidence            6899999999 999999999996   455556666665

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.17  E-value=1.1e-05  Score=45.57  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=27.6

Q ss_pred             EEEE--eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDY--RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~--~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      |+.+  +...++++|+|.+++.+ |+|.|.|++..
T Consensus        68 R~~~~~~~~~~~~sL~I~~l~~~-Dsg~Y~C~~~~  101 (119)
T cd05712          68 RFRLLGDLGKKNCSLLISDAQPE-DSGKYFFRVEL  101 (119)
T ss_pred             cEEEecCCCCCEEEEEEccCChh-hCeEEEEEEEc
Confidence            5555  56788899999999999 99999999876

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.15  E-value=9.2e-06  Score=42.54  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             EEEEccceeeccCeEEEEEEEEC
Q psy5866          17 DLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +|.|.+++.+ |+|.|+|.+.+.
T Consensus        46 ~L~I~~~~~~-DsG~Y~C~a~n~   67 (79)
T cd04973          46 EVQIKDAVPR-DSGLYACVTSSP   67 (79)
T ss_pred             EEEECCCChh-hCEEEEEEEeCC
Confidence            6999999999 999999999874

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.15  E-value=8.8e-06  Score=43.41  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=28.7

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ...|.|.+++.. |+|.|+|.+.+.   .........|.|+
T Consensus        49 ~s~L~I~~~~~~-DsG~Y~C~a~n~---~~~~~~~t~~~V~   85 (86)
T cd05862          49 SSTLTIENVTLS-DLGRYTCTASSG---QMIAKNSTIVIVH   85 (86)
T ss_pred             eeEEEEecCCcc-cCEEEEEEEeec---ceEecccEEEEEe
Confidence            457999999999 999999999984   4455555566554

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.14  E-value=1.2e-05  Score=42.43  Aligned_cols=24  Identities=17%  Similarity=0.198  Sum_probs=22.1

Q ss_pred             eEEEEEccceeeccCeEEEEEEEEC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...|.|.+++.. |+|.|+|.|.|.
T Consensus        45 ~~~L~I~~~~~~-D~G~YtC~A~N~   68 (81)
T cd04971          45 HGCLQFDNPTHV-NNGNYTLVASNE   68 (81)
T ss_pred             EEEEEECCCCcc-cCeEEEEEEEeC
Confidence            457999999999 999999999996

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.12  E-value=6.8e-06  Score=42.55  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=21.3

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .+|.|.+++.+ |+|.|+|.+.+.
T Consensus        36 ~~L~I~~v~~~-D~G~YtC~a~~~   58 (72)
T cd07702          36 YSLVIKDVTEE-DAGIYTILLGIK   58 (72)
T ss_pred             CEEEECcCCHH-HCEEEEEEEEcc
Confidence            37999999999 999999999985

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.10  E-value=1.8e-05  Score=40.64  Aligned_cols=26  Identities=23%  Similarity=0.542  Sum_probs=23.1

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .....|.|.+++.+ |+|.|+|.+.|.
T Consensus        40 ~~~~~L~I~~~~~~-D~G~Y~C~a~N~   65 (75)
T cd05750          40 KKNSELQINKAKLA-DSGEYTCVVENI   65 (75)
T ss_pred             CceEEEEEccCCcc-cCeEEEEEEEEc
Confidence            34568999999999 999999999996

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.10  E-value=1.9e-05  Score=41.65  Aligned_cols=25  Identities=20%  Similarity=0.151  Sum_probs=22.5

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ....|.|.++... |+|.|+|.|.|.
T Consensus        42 ~~~~L~i~~~~~~-D~G~YtC~A~N~   66 (79)
T cd05855          42 YHGCLQLDNPTHL-NNGIYTLVAKNE   66 (79)
T ss_pred             eEEEEEECCCCcc-cCEEEEEEEEcC
Confidence            3457999999999 999999999996

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.09  E-value=2.7e-05  Score=43.30  Aligned_cols=40  Identities=23%  Similarity=0.182  Sum_probs=30.4

Q ss_pred             eEEEEEccce-eeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          15 RYDLIISNAS-FERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        15 ~~~l~I~~v~-~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ...|+|.+++ .+ |.|.|+|.|.|.   .+..+..+.|.|..+|
T Consensus        68 ~s~L~I~~v~~~~-D~G~Y~C~A~N~---~G~~~~~i~L~~~~~p  108 (109)
T cd05773          68 TSILTIINVSAAL-DYALFTCTAHNS---LGEDSLDIQLVSTSRP  108 (109)
T ss_pred             eeEEEECcCCccC-CCEEEEEEEEeC---CccCcEEEEEEecCCC
Confidence            3579999997 58 999999999996   3445666777776444

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.09  E-value=1e-05  Score=44.04  Aligned_cols=36  Identities=31%  Similarity=0.461  Sum_probs=29.1

Q ss_pred             CEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          61 PKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      |.|....+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus         3 p~i~~~~~~~~~~G~~v~l~C~~~-G~P~p~i~W~k~   38 (98)
T cd05870           3 PHIIQLKNETTVENGAATLSCKAE-GEPIPEITWKRA   38 (98)
T ss_pred             CEEEeeccEEEcCCCcEEEEEecc-cCCCCeEEEEEC
Confidence            334333567899999999999986 899999999984

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.06  E-value=9e-06  Score=41.85  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=25.4

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      +|.|.++..+ |+|.|+|.+.|.   .+..+..+.|.
T Consensus        41 ~L~i~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~   73 (74)
T cd05764          41 TLDILITTVK-DTGSFTCIASNA---AGEATATVELH   73 (74)
T ss_pred             EEEEEECChh-hCEEEEEEEECC---CCeEEEEEEEE
Confidence            6899999999 999999999996   33444444444

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.06  E-value=1e-05  Score=44.21  Aligned_cols=27  Identities=22%  Similarity=0.429  Sum_probs=24.3

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        63 ~~~~~sL~I~~v~~~-D~G~Y~C~v~~~   89 (105)
T cd00099          63 SKSSFTLTISSLQPE-DSAVYYCAVSLS   89 (105)
T ss_pred             cCCEEEEEECCCCHH-HCEEEEEEEecC
Confidence            347899999999999 999999999874

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.05  E-value=1e-05  Score=43.88  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=25.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      ..|.|.++..+ |+|.|+|.+.+.   .......+.|.
T Consensus        60 ~~L~I~~~~~~-DsG~Y~C~~~N~---~g~~~~~~~L~   93 (94)
T cd05756          60 DLLWFLPAALE-DSGLYTCVVRNS---TYCMKVSISLT   93 (94)
T ss_pred             CeEEEccCCcc-cCeEEEEEEcCC---CccEEEEEEEE
Confidence            46999999999 999999999985   33333344444

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.03  E-value=7.7e-06  Score=42.41  Aligned_cols=31  Identities=26%  Similarity=0.451  Sum_probs=24.7

Q ss_pred             eEEEEe--CCCCeEEEEEccceeeccCeEEEEEE
Q psy5866           5 EIIDYR--PDSGRYDLIISNASFERDNGKFECRL   36 (98)
Q Consensus         5 ~~~~~~--~~~~~~~l~I~~v~~~~d~G~y~C~~   36 (98)
                      .|+.+.  ...+.++|+|.+++.+ |+|.|.|.+
T Consensus        49 ~R~~~~~~~~~~~~~L~i~~~~~~-D~G~Y~C~v   81 (81)
T smart00406       49 GRVTISKDTSKNDVSLTISNLRVE-DTGTYYCAV   81 (81)
T ss_pred             CcEEEEecCcCCEEEEEEcCCCHH-HCEEEEEcC
Confidence            344443  3478899999999999 999999964

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.03  E-value=1.4e-05  Score=41.71  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      .+|.|.++..+ |+|.|+|.+.|..
T Consensus        44 ~~L~I~~v~~~-D~G~Y~C~a~N~~   67 (79)
T cd05734          44 GSLLIKHVLEE-DSGYYLCKVSNDV   67 (79)
T ss_pred             CeEEECcCCcc-cCEEEEEEEEeCC
Confidence            57999999999 9999999999963

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.00  E-value=0.00014  Score=49.68  Aligned_cols=83  Identities=14%  Similarity=0.191  Sum_probs=60.9

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      ....+.+.|.|..++.. ++|.|+=++.+.+.+.......+.+.++.+|.. .+   ....+.+|+.+..+|.+..-+|.
T Consensus       283 ~a~p~~~pL~I~sltaA-TeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsV-sV---~p~PVL~Ge~YkAtC~vA~YYPp  357 (566)
T PHA03269        283 RKTTSDFSLHILSLDAS-TEGTYIWRVIHTANKNVINEHHITVMSYKRPNI-TV---IGDPVLLGNPYAAYCKVNKYYPP  357 (566)
T ss_pred             CCCCCccceEEeecccc-cCceEEEEEecCCCCceeeeeEEEEEEecCCCc-cc---cCCccccCCCceEEEEeeeecCC
Confidence            34456788999999999 999998777654333455556667777766532 22   33578899999999999877774


Q ss_pred             --CeEEEEec
Q psy5866          90 --PQISVTLQ   97 (98)
Q Consensus        90 --~~~~W~~~   97 (98)
                        ..++|+++
T Consensus       358 ~SvrlrWf~n  367 (566)
T PHA03269        358 HSVIVKWTSN  367 (566)
T ss_pred             CceEEEEEeC
Confidence              46899976

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.99  E-value=2.9e-05  Score=42.01  Aligned_cols=25  Identities=32%  Similarity=0.610  Sum_probs=22.1

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      ...|.|.++..+ |+|.|+|.+.+..
T Consensus        51 ~~~L~I~~v~~~-DsG~YtC~~~n~~   75 (92)
T cd05757          51 GSKLLIQNVTEE-DAGNYTCKLTFTH   75 (92)
T ss_pred             CCEEEEeeCChh-hCEEEEEEEEecC
Confidence            347999999999 9999999999863

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=97.96  E-value=2.6e-05  Score=41.69  Aligned_cols=30  Identities=27%  Similarity=0.429  Sum_probs=26.5

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|+.+.|.|.+. |.|.|.++|+++
T Consensus         9 ~~~~~~~G~~v~l~C~~~-G~P~P~v~W~k~   38 (88)
T cd05851           9 KDTYALKGQNVTLECFAL-GNPVPVIRWRKI   38 (88)
T ss_pred             ccEEEeCCCcEEEEEEec-ccCCCEEEEEEC
Confidence            456788999999999985 899999999985

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.95  E-value=2e-05  Score=40.75  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=25.8

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .|.|.+++.+ |+|.|+|.+.|..+  ...+..+.|.|
T Consensus        39 ~L~i~~~~~~-D~G~Y~C~a~N~~G--~~~s~~a~l~v   73 (74)
T cd05738          39 ALQIENSEES-DQGKYECVATNSAG--TRYSAPANLYV   73 (74)
T ss_pred             EEEECCCChh-hCEEEEEEEECCCC--ceEcccEEEEE
Confidence            5999999999 99999999998632  22344445544

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.94  E-value=1.8e-05  Score=41.93  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=25.8

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      .|.|.++..+ |+|.|+|.+.|.   .+.....+.|.
T Consensus        52 ~L~i~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~   84 (85)
T cd05728          52 DLRITKLSLS-DSGMYQCVAENK---HGTIYASAELA   84 (85)
T ss_pred             EEEEeeCCHH-HCEEEEEEEECC---CCeEEEEEEEE
Confidence            6999999999 999999999985   34444445544

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=97.91  E-value=0.00011  Score=38.39  Aligned_cols=37  Identities=22%  Similarity=0.474  Sum_probs=27.3

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      ...+.|.|.++..+ |+|.|.|.+.+.   .+.....+.|.
T Consensus        48 ~~~~~l~i~~~~~~-d~g~Y~C~~~n~---~g~~~~~~~l~   84 (85)
T cd05729          48 KKKWTLILESVVPS-DSGKYTCIVENK---YGSINHTYKVD   84 (85)
T ss_pred             CcEEEEEEeECCcc-cCEEEEEEEEEC---CceEEEEEEEe
Confidence            44567999999999 999999999985   33334444443

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=97.91  E-value=4.4e-05  Score=41.08  Aligned_cols=30  Identities=23%  Similarity=0.526  Sum_probs=26.2

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus         9 ~~~~v~~G~~~~l~C~~~-g~P~p~i~W~k~   38 (100)
T cd07693           9 SDLIVSKGDPATLNCKAE-GRPTPTIQWLKN   38 (100)
T ss_pred             ceeEEcCCCeEEEEeeCC-cCCCCEEEEEEC
Confidence            456888999999999986 789999999985

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=97.89  E-value=2.6e-05  Score=42.05  Aligned_cols=36  Identities=36%  Similarity=0.511  Sum_probs=28.3

Q ss_pred             CEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          61 PKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      |.|....+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus         3 P~i~~~~~~~~~~g~~v~l~C~~~-g~p~p~v~W~~~   38 (96)
T cd05732           3 PKITYLENQTAVELEQITLTCEAE-GDPIPEITWRRA   38 (96)
T ss_pred             ccceecCceeEecCCcEEEEEEEe-EcCCCcEEEEEC
Confidence            334323456788999999999986 789999999875

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>smart00409 IG Immunoglobulin

Probab=97.89  E-value=9.6e-05  Score=37.90  Aligned_cols=28  Identities=29%  Similarity=0.495  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ......+|.|.+++.. |+|.|.|.+.+.
T Consensus        46 ~~~~~~~l~i~~~~~~-d~G~Y~C~v~~~   73 (86)
T smart00409       46 RSGSNSTLTISNVTPE-DSGTYTCAATNS   73 (86)
T ss_pred             EcCCeeEEEEEeeccc-cCeEEEEEEEcC
Confidence            3333678999999999 999999999964

>smart00410 IG_like Immunoglobulin like

Probab=97.89  E-value=9.6e-05  Score=37.90  Aligned_cols=28  Identities=29%  Similarity=0.495  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ......+|.|.+++.. |+|.|.|.+.+.
T Consensus        46 ~~~~~~~l~i~~~~~~-d~G~Y~C~v~~~   73 (86)
T smart00410       46 RSGSNSTLTISNVTPE-DSGTYTCAATNS   73 (86)
T ss_pred             EcCCeeEEEEEeeccc-cCeEEEEEEEcC
Confidence            3333678999999999 999999999964

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=97.89  E-value=4.2e-05  Score=41.25  Aligned_cols=37  Identities=19%  Similarity=0.332  Sum_probs=26.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .+|.|+++..+ |+|.|.|.+.+...  ......+.|.|+
T Consensus        53 ~~L~I~~~~~~-DsG~Y~C~a~~~~~--~~~~~~~~l~v~   89 (91)
T cd05871          53 RGLLLRSLQRS-DAGVYTCTAVEHSF--SQTLAKYTLHVI   89 (91)
T ss_pred             CeEEEeeCChh-HCEEEEEEEEccCC--eEEEEEEEEEEe
Confidence            35999999999 99999999986422  222235666664

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.88  E-value=3.4e-05  Score=40.65  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=21.6

Q ss_pred             EEEEEccceeeccCeEEEEEEEECC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      .+|.|.+++.+ |+|.|+|.+.|..
T Consensus        51 ~~L~I~~~~~~-D~G~Y~C~a~N~~   74 (86)
T cd05724          51 GNLLIAEARKS-DEGTYKCVATNMV   74 (86)
T ss_pred             CEEEEeECCcc-cCEEEEEEEEecc
Confidence            36999999999 9999999999963

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.88  E-value=2.6e-05  Score=42.38  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=28.2

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .|+......+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        52 ~rf~~~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~   84 (98)
T cd04984          52 DRFSGSKSGNTASLTISGAQTE-DEADYYCQVWD   84 (98)
T ss_pred             CCEEEEccCCEEEEEECCCChh-hCEEEEEEEcc
Confidence            4666666668899999999999 99999998875

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>KOG3515|consensus

Probab=97.87  E-value=2.4e-05  Score=55.87  Aligned_cols=80  Identities=26%  Similarity=0.357  Sum_probs=54.7

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCC-ceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGAN-PVATEGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~-~~~~~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      .+.+...+.+ +.|.|+|.+.++++.....-....+.|..+.....+..... ....+|+.+.|.|.+.+|+|.+.+.|+
T Consensus       164 ~l~~~v~Rka-~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~  242 (741)
T KOG3515|consen  164 LLKQTVSRKA-DNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWY  242 (741)
T ss_pred             ceeeEEEEec-CCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhc
Confidence            4667777788 99999999998644333333333444433333333332222 567889999999999999999999998


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       243 ~~  244 (741)
T KOG3515|consen  243 KD  244 (741)
T ss_pred             cc
Confidence            65

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.84  E-value=4.3e-05  Score=42.80  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=34.0

Q ss_pred             EECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          54 VLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        54 v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      |.++|..|.+.. .......|+.++|.|.+.+++|. .+++|+++
T Consensus         2 v~~~P~~p~i~~-~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kn   45 (111)
T cd05772           2 VRAKPSVPVVSG-PSGRANPGQSVNFTCSAHGFSPRDITVKWLKN   45 (111)
T ss_pred             cccCCCCcEeCC-chhccCCCCCEEEEEEEeeEeCCCCEEEEEEC
Confidence            557888888864 34455678889999999998996 68999975

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.83  E-value=3.2e-05  Score=41.95  Aligned_cols=29  Identities=24%  Similarity=0.530  Sum_probs=25.5

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+...
T Consensus        58 ~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~   86 (98)
T cd05716          58 DPDNGVFTVTLNQLRKE-DAGWYWCGVGDD   86 (98)
T ss_pred             cCCCCEEEEEEcCCCHH-HCEEEEEEcccC
Confidence            45577899999999999 999999998864

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.81  E-value=7.3e-05  Score=40.74  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=21.9

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGS   41 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~   41 (98)
                      ..|.|.+++.+ |+|.|+|.+.+...
T Consensus        55 ~~L~I~~v~~~-D~G~YtC~~~~~~~   79 (95)
T cd05897          55 TYLHIIDVSLN-DSGYYTCKLQFTHE   79 (95)
T ss_pred             CEEEEEEcChh-hCEEEEEEEEEeeC
Confidence            35999999999 99999999998633

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.80  E-value=5.6e-05  Score=42.28  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             eEEEEe--CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           5 EIIDYR--PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         5 ~~~~~~--~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .|+.+.  ...+.++|+|.+++.+ |+|.|.|.+...
T Consensus        59 ~R~~~~~~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~~   94 (116)
T cd07706          59 GRYSVNFQKAQKSISLTISALQLE-DSAKYFCALSTL   94 (116)
T ss_pred             CeEEEEEeccCCEEEEEECCCCHH-HCEEEEEEEECC
Confidence            455543  5567899999999999 999999999863

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.78  E-value=4.9e-05  Score=40.26  Aligned_cols=25  Identities=24%  Similarity=0.490  Sum_probs=22.3

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ....|.|.+++.+ |+|.|+|.+.+.
T Consensus        46 ~~~~l~I~~~~~~-dsG~Y~C~~~~~   70 (83)
T cd05753          46 SNSNLSIPQATLS-DSGSYHCSGIIG   70 (83)
T ss_pred             CCceEEECccCHH-HCEEEEEEEEeC
Confidence            3467999999999 999999999985

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.78  E-value=3.9e-05  Score=42.27  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=26.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ++........++|+|.+++.+ |+|.|.|.+.+
T Consensus        61 r~~~~~~~~~~~L~I~~~~~~-Dsg~Y~Ca~~~   92 (106)
T cd04980          61 RFSGSGSGTDFTLTISRVEPE-DAAVYYCQQYG   92 (106)
T ss_pred             CEEEeccCCEEEEEECCCChH-HCEEEEEEEeC
Confidence            555555567889999999999 99999999865

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.78  E-value=7e-05  Score=39.93  Aligned_cols=36  Identities=28%  Similarity=0.483  Sum_probs=26.7

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .|.|.+++.+ |+|.|.|.+.+..  .......+.+.|.
T Consensus        52 ~L~I~~~~~~-D~G~Y~C~a~~~~--~~~~~~~~~l~V~   87 (89)
T cd04979          52 GLLIRSVSPA-DAGVYTCQSVEHG--FKQTLATYSLNVL   87 (89)
T ss_pred             CEEEccCCHH-HCEEEEEEEecCc--cceeEeEEEEEEe
Confidence            4899999999 9999999998752  2344444556554

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.76  E-value=0.00016  Score=40.04  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .+|.|.+++.. |+|.|.|++.+.
T Consensus        70 gSL~I~~v~~~-D~G~Y~~~v~~~   92 (105)
T cd05774          70 GSLLIQNVTQK-DTGFYTLQTITT   92 (105)
T ss_pred             CcEEEecCCcc-cCEEEEEEEEeC
Confidence            37999999999 999999999985

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.76  E-value=5.2e-05  Score=41.79  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=27.4

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .|+........++|+|.+++.+ |+|.|.|.+..
T Consensus        58 ~rf~~~~~~~~~~L~I~~~~~s-DsgtY~Ca~~~   90 (104)
T cd05720          58 KRFSGSRSSNSFVLTLKNFQKE-NEGYYFCSVAS   90 (104)
T ss_pred             ceEEEEecCCEEEEEECCCCHH-HCEEEEEEEcc
Confidence            4566655568899999999999 99999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.75  E-value=9e-05  Score=39.74  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=20.4

Q ss_pred             EEEEccceeeccCeEEEEEEEEC
Q psy5866          17 DLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .|.|.+++.+ |+|.|+|.+...
T Consensus        49 ~L~I~nv~~~-DsG~Y~C~a~e~   70 (87)
T cd05873          49 GLLIFNASEA-DAGRYQCLSVEK   70 (87)
T ss_pred             cEEEeCCCHH-HCEEEEEEEEec
Confidence            4999999999 999999999885

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.75  E-value=7.7e-05  Score=41.34  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=26.6

Q ss_pred             eEEEEeCC-CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           5 EIIDYRPD-SGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         5 ~~~~~~~~-~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .|+..... ...++|.|.+++.+ |+|.|.|.+...
T Consensus        60 ~r~~~~~~~~~~~~L~I~~~~~~-Dsg~Y~Ca~~~~   94 (110)
T cd05899          60 DRFSASRPSLTRSSLTIKSAEPE-DSAVYLCASSLG   94 (110)
T ss_pred             CceEEECcCCCccEEEECCCChh-hCEEEEEEeeCC
Confidence            34554433 36789999999999 999999998763

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=97.75  E-value=7e-05  Score=39.57  Aligned_cols=30  Identities=23%  Similarity=0.435  Sum_probs=25.9

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      .+..+.+|+.+.|.|.+. |.|.| ++.|+++
T Consensus         6 ~~~~v~~G~~v~l~C~a~-G~P~P~~I~W~k~   36 (81)
T cd05749           6 EDLSVTANTPFNLTCQAV-GPPEPVEILWWQG   36 (81)
T ss_pred             CceEEcCCCCEEEEEEee-eecCCeEEEEEEC
Confidence            346788999999999985 89999 7999975

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=97.73  E-value=5e-05  Score=39.14  Aligned_cols=24  Identities=33%  Similarity=0.772  Sum_probs=21.4

Q ss_pred             CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +|+.+.|.|.+. |.|.|.+.|+++
T Consensus         1 eG~~v~l~C~~~-g~P~p~i~W~k~   24 (74)
T cd05745           1 EGQTVDFLCEAQ-GYPQPVIAWTKG   24 (74)
T ss_pred             CCCeEEEEeECC-EecCCEEEEEEC
Confidence            588999999985 899999999975

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=97.71  E-value=0.00013  Score=39.62  Aligned_cols=37  Identities=30%  Similarity=0.428  Sum_probs=28.5

Q ss_pred             CCEEeCCCCceecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          60 PPKISPGANPVATEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        60 ~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      +|.|.......+.+|+.+.|.|.+. |.|.| .+.|+++
T Consensus         2 pp~i~~~~~~~~~~G~~v~L~C~~~-g~P~P~~v~W~~~   39 (98)
T cd05758           2 PPIITSEATQYAILGDKGRVECFIF-STPPPDRIVWTWK   39 (98)
T ss_pred             CCeEcCCCcEEEeCCCcEEEEEEEc-ccCCCCEeEEEEC
Confidence            3555433556788999999999996 78888 6999864

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.69  E-value=0.00013  Score=38.37  Aligned_cols=31  Identities=26%  Similarity=0.487  Sum_probs=26.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+++.|.|.+..|.|.|.+.|+++
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~   34 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKD   34 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEEC
Confidence            3467889999999999856889999999975

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.68  E-value=0.00014  Score=40.06  Aligned_cols=29  Identities=17%  Similarity=0.352  Sum_probs=25.4

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCe--EEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQ--ISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~--~~W~~~   97 (98)
                      ..+.+|+.++|+|.+.++.|.+.  +.|++.
T Consensus        11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG   41 (100)
T cd05755          11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRG   41 (100)
T ss_pred             CcccCCCcEEEEEEEcCcCCCCcEEEEEeeC
Confidence            45689999999999999999887  699975

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.68  E-value=9.3e-05  Score=39.07  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..|.|.+++.+ |+|.|.|.+.+.
T Consensus        52 ~~L~I~~v~~~-DsG~Y~C~a~n~   74 (85)
T cd05754          52 GILTIRNVQLS-DAGTYVCTGSNM   74 (85)
T ss_pred             CEEEECCCCHH-HCEEEEEEEecc
Confidence            47999999999 999999999885

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.67  E-value=0.00024  Score=43.09  Aligned_cols=51  Identities=24%  Similarity=0.343  Sum_probs=37.3

Q ss_pred             eEEE-EeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC
Q psy5866           5 EIID-YRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP   57 (98)
Q Consensus         5 ~~~~-~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~   57 (98)
                      .|++ +...-...+|+|.+++++ |+|.|.|.+..-..+ ...+....|+|...
T Consensus        73 ~Rve~mS~s~~~StItIknVt~s-DeGcY~C~F~tfp~G-~~~~gt~CLtVt~~  124 (189)
T PHA02987         73 NKIEYLSKSFNESTILIKNVSLK-DNGCYTCIFNTLLSK-NNEKGVVCLNVTTD  124 (189)
T ss_pred             CeEEEeccCCCcceEEEEeCChh-hCeEEEEEEEecCCC-CCceeEEEEEEEch
Confidence            3666 345555678999999999 999999999885332 25566678888643

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=97.66  E-value=9.1e-05  Score=39.78  Aligned_cols=29  Identities=31%  Similarity=0.629  Sum_probs=25.5

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        10 ~v~v~~G~~v~L~C~v~-G~P~p~v~W~k~   38 (92)
T cd05737          10 VVTIMEGKTLNLTCTVF-GDPDPEVSWLKN   38 (92)
T ss_pred             eEEEeCCCcEEEEEEEE-ecCCCeEEEEEC
Confidence            35788999999999985 789999999985

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.65  E-value=4.8e-05  Score=37.86  Aligned_cols=18  Identities=44%  Similarity=0.803  Sum_probs=17.3

Q ss_pred             EEEccceeeccCeEEEEEE
Q psy5866          18 LIISNASFERDNGKFECRL   36 (98)
Q Consensus        18 l~I~~v~~~~d~G~y~C~~   36 (98)
                      |.|.+++.+ |+|.|+|.|
T Consensus        47 L~i~~v~~~-d~G~Y~C~v   64 (64)
T PF00047_consen   47 LTISNVTPE-DSGTYTCVV   64 (64)
T ss_dssp             EEESSCTGG-GTEEEEEEE
T ss_pred             EEEccCCHH-HCEEEEEEC
Confidence            999999999 999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.64  E-value=0.00012  Score=39.18  Aligned_cols=29  Identities=28%  Similarity=0.565  Sum_probs=25.5

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus         9 ~~~v~~G~~v~l~C~~~-G~P~p~v~W~~~   37 (90)
T cd04972           9 ATVVYEGGTATIRCTAE-GSPLPKVEWIIA   37 (90)
T ss_pred             CEEEcCCCcEEEEEEEE-EcCCCeEEEEEC
Confidence            45588999999999996 799999999975

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=97.64  E-value=0.00015  Score=38.90  Aligned_cols=30  Identities=20%  Similarity=0.523  Sum_probs=26.7

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        11 ~~~~~~~G~~~~L~C~~~-g~P~p~v~W~k~   40 (92)
T cd05747          11 RSLTVSEGESARFSCDVD-GEPAPTVTWMRE   40 (92)
T ss_pred             ccEEEeCCCcEEEEEEEe-ecCCCEEEEEEC
Confidence            467899999999999986 899999999976

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.63  E-value=0.00013  Score=40.30  Aligned_cols=28  Identities=36%  Similarity=0.566  Sum_probs=24.2

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ......++|+|.+++.+ |+|.|.|....
T Consensus        66 ~~~~~~~~L~I~~~~~~-Dsg~YyCa~~~   93 (107)
T cd07700          66 TSDSSRYRLHINRVKPE-DSGTYFCMTVG   93 (107)
T ss_pred             ECCCCEEEEEECCCCHH-HCEEEEEeEcC
Confidence            45566889999999999 99999999764

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=97.63  E-value=8.3e-05  Score=40.89  Aligned_cols=31  Identities=23%  Similarity=0.355  Sum_probs=26.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+++.|.|.+.+..|+|.+.|+|+
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kd   41 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYD   41 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeC
Confidence            4568889999999999963389999999986

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.62  E-value=0.00021  Score=38.45  Aligned_cols=28  Identities=18%  Similarity=0.324  Sum_probs=24.4

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +..+.+|+.+.|.|.+. |. .|.+.|+++
T Consensus        12 ~~~v~~g~~v~l~C~a~-g~-~p~i~W~kn   39 (91)
T cd05740          12 NQPPEDNQPVTLTCEAE-GQ-ATYIWWVNN   39 (91)
T ss_pred             ccccccCCcEEEEEEeC-CC-CCEEEEEEC
Confidence            45899999999999996 66 899999975

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.61  E-value=0.00014  Score=40.64  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=25.6

Q ss_pred             EEEEeCCC--CeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDS--GRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~--~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      |+.+....  ..++|+|.+++.+ |+|.|.|.+..
T Consensus        65 r~~~~~~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~   98 (116)
T cd04982          65 KFEARKDVGKSTSTLTIQNLEKE-DSATYYCAYWE   98 (116)
T ss_pred             CEEEEEECCCCEEEEEEEECCHH-HCEEEEEEEec
Confidence            44443333  7899999999999 99999999875

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PHA02633 hypothetical protein; Provisional

Probab=97.60  E-value=0.00035  Score=34.90  Aligned_cols=36  Identities=17%  Similarity=0.324  Sum_probs=28.0

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..|.|-++..+ |+|+|.|...+.   ..-...++.++|.
T Consensus        18 ~nLwilpa~~s-DSGiYiC~~rn~---t~c~~~si~l~V~   53 (63)
T PHA02633         18 NNMLILNPTQS-DSGIYMCITKNE---TYSDMMKFDLCIC   53 (63)
T ss_pred             ccEEEeccccc-cCcEEEEEEcCC---CeeEEEEEEEEEe
Confidence            46999999999 999999999874   3444555677775

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.59  E-value=4.5e-05  Score=39.99  Aligned_cols=21  Identities=24%  Similarity=0.525  Sum_probs=18.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+|+|.++ .+ |+|.|+|++.+
T Consensus        47 ~~l~i~~~-~~-dsG~Y~C~a~~   67 (78)
T cd05752          47 NSYRIRAA-NN-DSGEYRCQTQG   67 (78)
T ss_pred             CeEEEeec-cc-CCEEeEEECCC
Confidence            46899999 99 99999999976

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.58  E-value=0.00032  Score=36.98  Aligned_cols=31  Identities=16%  Similarity=0.296  Sum_probs=25.7

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.++|.|.+..+.|.+.+.|+++
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~   39 (85)
T cd05754           9 RSQEVRPGADVSFICRAKSKSPAYTLVWTRV   39 (85)
T ss_pred             CceEEcCCCCEEEEEEcCCCCCCcEEEEEEC
Confidence            3457788999999999875678899999975

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.57  E-value=0.00012  Score=37.34  Aligned_cols=23  Identities=26%  Similarity=0.579  Sum_probs=20.2

Q ss_pred             CCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          74 GRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      |+.+.|.|.+. |.|.|.+.|++.
T Consensus         1 G~~v~L~C~a~-G~P~P~v~W~k~   23 (69)
T cd05739           1 GGSVNLTCVAV-GAPMPYVKWMKG   23 (69)
T ss_pred             CCeEEEEEEee-ecCCCEEEEEEC
Confidence            56799999996 899999999874

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=97.57  E-value=0.00017  Score=37.87  Aligned_cols=28  Identities=14%  Similarity=0.456  Sum_probs=24.2

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+.+|..+.|.|.+. |.|.|.+.|+++
T Consensus         4 ~~v~~G~~~~L~C~~~-g~P~p~i~W~k~   31 (85)
T cd05857           4 HAVPAANTVKFRCPAA-GNPTPTMRWLKN   31 (85)
T ss_pred             EEcCCCCEEEEEEEcC-CCCCCEEEEEEC
Confidence            4577899999999986 789999999986

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.57  E-value=0.0022  Score=43.37  Aligned_cols=81  Identities=16%  Similarity=0.220  Sum_probs=52.0

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECC-CCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAG-SGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~-~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      .-.....|.|+++... |+|.|  ++..+. ...........+.+...|....+   ....+.+|+.+..+|.+..-+|+
T Consensus       202 ktt~~m~v~I~svD~~-t~Gy~--~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV---~a~PVL~Ge~YkAtC~vAnYYPP  275 (490)
T PHA03271        202 KTTNTMGVEIRNVDYA-DNGYI--QVIMRDPFNRPLLDKHIYIRVCQRPASVDV---LAPPVLSGENYKASCIVRHFYPP  275 (490)
T ss_pred             cccceeeEEEEEeecc-cceEE--EEEecCCCCCccccceEEEEEEecCCCccc---cCCccccCCCceEEEEeeeecCC
Confidence            3445678999999999 99955  333321 11234444445555433322223   33578899999999999877774


Q ss_pred             --CeEEEEec
Q psy5866          90 --PQISVTLQ   97 (98)
Q Consensus        90 --~~~~W~~~   97 (98)
                        ..++|+++
T Consensus       276 ~SvrlrWf~n  285 (490)
T PHA03271        276 GSVYVSWRQN  285 (490)
T ss_pred             CceEEEEEeC
Confidence              36899975

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.56  E-value=5.9e-05  Score=40.14  Aligned_cols=25  Identities=52%  Similarity=0.925  Sum_probs=21.3

Q ss_pred             CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .|+.+.++|.+.+++|+|.++|+.+
T Consensus        13 ~~~~~~~~C~s~~~~P~~~i~W~~~   37 (89)
T PF08205_consen   13 EGEEVTLTCSSSGGYPPPQITWYLD   37 (89)
T ss_dssp             STEEEEEEEEEEEEBS-EEEEEEET
T ss_pred             cceEEEEEEEeCCeECCeEEEEEEC
Confidence            3678999999999999999999865

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=97.56  E-value=0.00022  Score=37.83  Aligned_cols=30  Identities=30%  Similarity=0.483  Sum_probs=25.7

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus         9 ~~~~~~~g~~v~l~C~~~-g~P~p~v~W~k~   38 (88)
T cd04968           9 KDTYALKGQNVTLECFAL-GNPVPQIKWRKV   38 (88)
T ss_pred             CceEEeCCCcEEEEEEee-EeCCCEEEEEEC
Confidence            446688999999999985 889999999985

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.55  E-value=0.00015  Score=39.59  Aligned_cols=25  Identities=20%  Similarity=0.476  Sum_probs=22.2

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      +.+|.+++|+.+ |+|.|.|.|.+..
T Consensus        59 ~G~L~fs~v~~~-D~g~Y~C~A~n~~   83 (96)
T cd05727          59 NGNLYIAKVEAS-DRGNYSCFVSSPS   83 (96)
T ss_pred             CCcEEEeecCHh-hCceeEEEEEecc
Confidence            346999999999 9999999999853

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.55  E-value=0.00014  Score=37.83  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=19.0

Q ss_pred             EEEEEcccee----eccCeEEEEEEEECC
Q psy5866          16 YDLIISNASF----ERDNGKFECRLKAAG   40 (98)
Q Consensus        16 ~~l~I~~v~~----~~d~G~y~C~~~~~~   40 (98)
                      .+|.|.+++.    + |+|.|+|.|.|..
T Consensus        39 g~L~i~~~~~~~~~~-d~G~Y~C~A~N~~   66 (77)
T cd05733          39 GTLVIDNMNGGRAED-YEGEYQCYASNEL   66 (77)
T ss_pred             CEEEEeccCCCCCcC-CCEEEEEEEEcCC
Confidence            4577877753    6 8999999999963

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.54  E-value=0.0002  Score=39.12  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=27.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|....|.|.+.+.|+++
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~   41 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLN   41 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEEC
Confidence            3457889999999999999999999999986

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=97.53  E-value=0.00016  Score=38.48  Aligned_cols=29  Identities=24%  Similarity=0.417  Sum_probs=25.4

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus         4 ~~~v~~G~~v~l~c~~~-G~P~P~v~W~k~   32 (86)
T cd05894           4 TIVVVAGNKLRLDVPIS-GEPAPTVTWSRG   32 (86)
T ss_pred             EEEEEcCCEEEEEeeEe-ecCCCeEEEEEC
Confidence            45778999999999985 899999999975

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.53  E-value=0.00021  Score=37.85  Aligned_cols=30  Identities=23%  Similarity=0.442  Sum_probs=25.9

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus         7 ~~~~~~~G~~~~l~C~~~-g~p~p~v~W~k~   36 (85)
T cd05728           7 SDTEADIGSSLRWECKAS-GNPRPAYRWLKN   36 (85)
T ss_pred             CccEEcCCCcEEEEEEee-EeCCCEEEEEEC
Confidence            346788999999999985 799999999975

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=97.52  E-value=0.00029  Score=37.97  Aligned_cols=29  Identities=34%  Similarity=0.604  Sum_probs=24.8

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|+++.|.|.+. |.|.|.+.|+++
T Consensus         8 ~~~~~~g~~v~l~C~v~-g~P~p~i~W~k~   36 (95)
T cd05722           8 DIVAVRGGPVVLNCSAE-GEPPPKIEWKKD   36 (95)
T ss_pred             CeEEcCCCCEEEeeecc-cCCCCEEEEEEC
Confidence            45677899999999986 789999999985

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=97.50  E-value=0.00052  Score=35.72  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=18.4

Q ss_pred             EEEEEccce---eeccCeEEEEEEEECC
Q psy5866          16 YDLIISNAS---FERDNGKFECRLKAAG   40 (98)
Q Consensus        16 ~~l~I~~v~---~~~d~G~y~C~~~~~~   40 (98)
                      .+|.|.+++   ..+|+|.|+|.|.|..
T Consensus        39 ~~L~i~~~~~~~~~~d~G~Y~C~A~N~~   66 (77)
T cd05875          39 GTLVIDFSGGGRPEDYEGEYQCFARNNL   66 (77)
T ss_pred             ceEEEeccCCCCCCCCCEEEEEEEEecc
Confidence            468887764   2326999999999963

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=97.49  E-value=0.00031  Score=38.29  Aligned_cols=30  Identities=17%  Similarity=0.303  Sum_probs=26.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+..|+.+.|.|.+. |.|.+++.|+++
T Consensus         8 ~~~~v~~G~~v~l~C~~~-G~p~p~v~W~kd   37 (98)
T cd05762           8 EDMKVRAGESVELFCKVT-GTQPITCTWMKF   37 (98)
T ss_pred             cCEEEECCCEEEEEEEEc-ccCCCceEEEEC
Confidence            457889999999999995 899999999975

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=97.49  E-value=0.0003  Score=37.99  Aligned_cols=23  Identities=26%  Similarity=0.694  Sum_probs=19.9

Q ss_pred             EEEEccce-eeccCeEEEEEEEECC
Q psy5866          17 DLIISNAS-FERDNGKFECRLKAAG   40 (98)
Q Consensus        17 ~l~I~~v~-~~~d~G~y~C~~~~~~   40 (98)
                      .|.|.++. .. |+|.|+|.|.|..
T Consensus        58 ~L~I~~~~~~~-D~G~Y~C~A~N~~   81 (93)
T cd05849          58 NLVINNPDKYK-DAGRYVCIVSNIY   81 (93)
T ss_pred             EEEECcCCcCC-CCEEEEEEEEeCc
Confidence            68999985 68 9999999999963

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=97.49  E-value=0.00029  Score=38.24  Aligned_cols=24  Identities=21%  Similarity=0.236  Sum_probs=20.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .+|+|.++..+||.|.|.|.|.|.
T Consensus        64 s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758          64 STLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             EEEEECCccccccceeEEEEEEcC
Confidence            479999999962599999999996

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.48  E-value=0.00053  Score=35.88  Aligned_cols=30  Identities=17%  Similarity=0.265  Sum_probs=23.9

Q ss_pred             CCceecCCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      +...+.+|+.+.|.|.+. +.|. +.+.|+++
T Consensus         8 ~~~~v~~G~~V~L~C~~~-~~p~~~~~~W~kn   38 (78)
T cd05752           8 PWTTIFQGEKVTLTCNGF-NSPEQNSTQWYHN   38 (78)
T ss_pred             CCeEeeCCCCEEEEEeCC-CCCCCccEEEEEC
Confidence            346788999999999986 4554 57999986

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.48  E-value=0.00017  Score=34.87  Aligned_cols=25  Identities=28%  Similarity=0.567  Sum_probs=21.6

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ....|.|.++... |+|.|.|.+.+.
T Consensus        37 ~~~~L~i~~~~~~-d~G~Y~C~~~n~   61 (63)
T smart00408       37 SGSTLTIKSVSLE-DSGEYTCVAENS   61 (63)
T ss_pred             CCcEEEEeeCCcc-cCEEEEEEEecC
Confidence            3457999999999 999999999863

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=97.48  E-value=0.00023  Score=38.28  Aligned_cols=30  Identities=27%  Similarity=0.555  Sum_probs=25.9

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus         9 ~~v~v~eG~~v~L~C~v~-g~P~p~i~W~k~   38 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVF-GNPDPEVIWFKN   38 (92)
T ss_pred             CcEEEcCCCEEEEEEEEE-EeCCCeEEEEEC
Confidence            346788999999999985 789999999986

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=97.44  E-value=0.00043  Score=38.30  Aligned_cols=23  Identities=22%  Similarity=0.537  Sum_probs=20.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..|.|.++.++ |+|.|.|.+.+.
T Consensus        70 ~~Lwf~Pa~~e-DSG~Y~C~~rN~   92 (104)
T cd05896          70 DSIWFRPAELQ-DSGLYTCVLRNS   92 (104)
T ss_pred             CEEEEEeCChh-hCeEEEEEECCC
Confidence            35999999999 999999999984

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=97.44  E-value=0.00064  Score=42.63  Aligned_cols=23  Identities=30%  Similarity=0.691  Sum_probs=21.0

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..|.|.+++.+ |+|.|+|.+...
T Consensus       188 ~~L~I~~V~~~-DsG~YtC~a~~~  210 (227)
T PHA02826        188 STLVIKSATHD-DSGIYTCNLRFN  210 (227)
T ss_pred             CEEEECcCCHH-hCEEEEEEEEEe
Confidence            47999999999 999999999874

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.42  E-value=0.00034  Score=37.60  Aligned_cols=29  Identities=31%  Similarity=0.667  Sum_probs=25.2

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+..|+.+.|.|.+. |.|.|.+.|+++
T Consensus        12 ~~~~~~G~~v~L~C~~~-g~P~p~v~W~k~   40 (95)
T cd05730          12 NATANLGQSVTLACDAD-GFPEPTMTWTKD   40 (95)
T ss_pred             ceEEeCCCCEEEEEecc-EeCCCEEEEEEC
Confidence            35688999999999985 799999999975

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=97.40  E-value=0.00026  Score=38.24  Aligned_cols=24  Identities=21%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +|+.+.|.|.+. |.|.|.++|+++
T Consensus        18 ~g~~v~l~C~~~-G~P~P~i~W~k~   41 (94)
T cd05848          18 DEKKVILNCEAR-GNPVPTYRWLRN   41 (94)
T ss_pred             CCCEEEEEEEee-ecCCCEEEEEEC
Confidence            578899999985 899999999975

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.40  E-value=0.0006  Score=34.76  Aligned_cols=21  Identities=14%  Similarity=0.317  Sum_probs=17.9

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..|+|.++  . |+|.|+|.|.|.
T Consensus        38 ~~L~i~~~--~-d~G~Y~C~A~N~   58 (69)
T cd05739          38 NVLELTNI--Y-ESANYTCVAISS   58 (69)
T ss_pred             cEEEEecc--c-cCeeEEEEEEeC
Confidence            46888886  6 899999999996

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.38  E-value=0.0004  Score=37.62  Aligned_cols=27  Identities=30%  Similarity=0.477  Sum_probs=22.4

Q ss_pred             eecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          70 VATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....|+.+.|.|.+. |.|.|.++|+++
T Consensus        13 ~~~~g~~v~l~C~~~-G~P~P~v~W~~~   39 (97)
T cd05869          13 AMELEEQITLTCEAS-GDPIPSITWRTS   39 (97)
T ss_pred             EEEcCCCEEEEEEee-EeCCCEEEEEEC
Confidence            344579999999986 789999999874

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=97.38  E-value=0.00037  Score=37.66  Aligned_cols=23  Identities=39%  Similarity=0.728  Sum_probs=19.6

Q ss_pred             EEEEccce-eeccCeEEEEEEEECC
Q psy5866          17 DLIISNAS-FERDNGKFECRLKAAG   40 (98)
Q Consensus        17 ~l~I~~v~-~~~d~G~y~C~~~~~~   40 (98)
                      +|.|.++. .. |+|.|+|.|.|..
T Consensus        59 ~L~i~~~~~~~-D~G~Y~C~A~N~~   82 (94)
T cd05848          59 NLIISNPSEVK-DSGRYQCLATNSI   82 (94)
T ss_pred             eEEEccCCccC-cCEEEEEEEEcCC
Confidence            58898874 68 9999999999963

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.37  E-value=0.00031  Score=37.15  Aligned_cols=30  Identities=27%  Similarity=0.574  Sum_probs=26.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+++.|.|.+. +.|.+.+.|+++
T Consensus         8 ~~~~v~~G~~~~l~c~~~-~~p~~~v~W~~~   37 (90)
T PF07679_consen    8 KDVTVKEGESVTLECEVS-GNPPPTVTWYKN   37 (90)
T ss_dssp             SEEEEETTSEEEEEEEEE-ESSSSEEEEEET
T ss_pred             CCEEEeCCCEEEEEEEEE-eCCCCccccccc
Confidence            557899999999999996 678999999975

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.37  E-value=0.00035  Score=38.08  Aligned_cols=31  Identities=16%  Similarity=0.166  Sum_probs=27.1

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|....|.|.|.+.|+.+
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~   41 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNS   41 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECC
Confidence            4578999999999998777999999999864

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.36  E-value=0.00043  Score=37.16  Aligned_cols=26  Identities=15%  Similarity=0.496  Sum_probs=22.1

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .....+.|.+|+.+ |+|.|+|+..+.
T Consensus        50 ~~~~~f~i~~v~~~-~~G~Y~C~~~~~   75 (91)
T cd05751          50 QNKAKFFIPSMKRE-HAGRYRCYYRSG   75 (91)
T ss_pred             ceeEEEEccCCChh-HCEEEEEEEECC
Confidence            34567999999999 999999998863

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=97.34  E-value=0.00071  Score=36.52  Aligned_cols=23  Identities=26%  Similarity=0.546  Sum_probs=19.1

Q ss_pred             EEEEccce-eeccCeEEEEEEEECC
Q psy5866          17 DLIISNAS-FERDNGKFECRLKAAG   40 (98)
Q Consensus        17 ~l~I~~v~-~~~d~G~y~C~~~~~~   40 (98)
                      +|.|.++. .. |+|.|+|.|.|..
T Consensus        59 ~L~I~~~~~~~-D~G~Y~C~A~N~~   82 (94)
T cd05850          59 NLVINNPQKAR-DAGSYQCLAINRC   82 (94)
T ss_pred             eEEEccCCccC-cCEEEEEEEEcCc
Confidence            58888765 58 9999999999964

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.30  E-value=0.00046  Score=34.80  Aligned_cols=26  Identities=35%  Similarity=0.532  Sum_probs=22.1

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ......|.|.++..+ |.|.|+|.|.|
T Consensus        50 ~~~~~~L~i~~v~~~-~~g~y~C~a~N   75 (75)
T PF13927_consen   50 SSSNSTLTISNVTRS-DNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEESSCCGG-GTEEEEEEEEE
T ss_pred             cceeeEEEEccCCHH-hCcEEEEEEEC
Confidence            344567999999999 99999999975

...

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.29  E-value=0.0015  Score=36.77  Aligned_cols=26  Identities=15%  Similarity=0.213  Sum_probs=22.2

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ....++|+|.++..+ |+|.|.|.+..
T Consensus        72 ~~~~~~L~I~~~~~~-Dsa~YyCa~~~   97 (117)
T cd04981          72 SKSTVYLQLNSLTPE-DTAVYYCARGL   97 (117)
T ss_pred             cCCEEEEEECCCCHH-HCEEEEEEEEc
Confidence            345678999999999 99999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=97.29  E-value=0.0018  Score=34.64  Aligned_cols=30  Identities=17%  Similarity=0.247  Sum_probs=19.8

Q ss_pred             cceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          22 NASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        22 ~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      +++.+ |+|.|+|.+.|..+  ...+..+.|.|
T Consensus        70 ~~~~~-D~G~Y~C~a~N~~G--~~~s~~~~l~v   99 (100)
T cd07693          70 RKGRS-DEGVYVCVAHNSLG--EAVSRNASLEV   99 (100)
T ss_pred             CCCcC-cCEEEEEEEEcccc--ceecceEEEEe
Confidence            34688 99999999999632  22344445544

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.28  E-value=0.00039  Score=37.89  Aligned_cols=23  Identities=17%  Similarity=0.322  Sum_probs=21.0

Q ss_pred             EEEEEccceeeccCe-EEEEEEEEC
Q psy5866          16 YDLIISNASFERDNG-KFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G-~y~C~~~~~   39 (98)
                      .+|.|++|..+ |+| .|.|.|.+.
T Consensus        58 GnL~fs~v~~~-D~g~~Y~C~a~~~   81 (95)
T cd05845          58 GNLYFANVEEQ-DSHPDYICHAHFP   81 (95)
T ss_pred             ceEEEEEEehh-hCCCCeEEEEEcc
Confidence            46999999999 999 899999985

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.27  E-value=0.00097  Score=35.22  Aligned_cols=31  Identities=19%  Similarity=0.271  Sum_probs=25.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +...+.+|+.++|.|.+..+.+.+.+.|+++
T Consensus         7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~   37 (83)
T cd05753           7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRD   37 (83)
T ss_pred             CcceecCCCCEEEEeeCCCCCcceEEEEEEC
Confidence            3457889999999999866667788999975

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.25  E-value=0.00083  Score=36.75  Aligned_cols=31  Identities=16%  Similarity=0.416  Sum_probs=26.3

Q ss_pred             CCceecCCCcEEE-EEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIEL-VCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l-~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|..+.+ .|.+.+|+|++.++|+..
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~   40 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETN   40 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCC
Confidence            4456778888888 999999999999999864

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=97.24  E-value=0.0016  Score=33.84  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=16.9

Q ss_pred             EEEEcccee----eccCeEEEEEEEEC
Q psy5866          17 DLIISNASF----ERDNGKFECRLKAA   39 (98)
Q Consensus        17 ~l~I~~v~~----~~d~G~y~C~~~~~   39 (98)
                      +|.|..+..    . |+|.|+|.|.|.
T Consensus        40 ~l~i~~~~~~~~~~-d~G~Y~C~A~N~   65 (77)
T cd05874          40 TLVINIMNGEKAEA-YEGVYQCTARNE   65 (77)
T ss_pred             eEEEeccccCCCCC-CCEEEEEEEEcC
Confidence            566766653    4 689999999995

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.23  E-value=0.0015  Score=34.89  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             EEEccceeeccCeEEEEEEEEC
Q psy5866          18 LIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        18 l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |.|.+++.. |+|.|.|.+.-.
T Consensus        49 LlI~~~~~~-dsG~Y~C~s~E~   69 (85)
T cd05872          49 LLILVTSPE-HSGTYRCYSEEE   69 (85)
T ss_pred             CEEEECCHh-hCEEEEEEEecC
Confidence            789999999 999999998863

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=97.22  E-value=0.00058  Score=35.36  Aligned_cols=28  Identities=29%  Similarity=0.541  Sum_probs=23.3

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .....|+.+.|.|.+. |.|.|.+.|+++
T Consensus         4 ~~~~~G~~v~L~C~~~-g~p~p~i~W~k~   31 (82)
T cd05856           4 IARPVGSSVRLKCVAS-GNPRPDITWLKD   31 (82)
T ss_pred             eeccCCCeEEEEEEee-EeCCCcEEEEEC
Confidence            3456789999999985 788899999975

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.22  E-value=0.00083  Score=34.38  Aligned_cols=35  Identities=34%  Similarity=0.632  Sum_probs=27.1

Q ss_pred             CEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          61 PKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      |.|.. ....+.+|+.+.|.|.+. +.|.+.+.|+++
T Consensus         2 P~l~~-~~~~v~~g~~~~l~C~~~-~~p~~~~~w~~~   36 (80)
T PF13895_consen    2 PVLSS-SPQSVEEGDSVTLTCSVS-GNPPPQVQWYKN   36 (80)
T ss_dssp             -EEEE-ESSEEETTSEEEEEEEEE-SSSSSEEEEEET
T ss_pred             cEEEc-cceEEeCCCcEEEEEEEE-cccceeeeeeee
Confidence            45543 236788999999999986 777899999874

...

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.21  E-value=0.0017  Score=33.15  Aligned_cols=34  Identities=38%  Similarity=0.541  Sum_probs=24.8

Q ss_pred             EEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        18 l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      +.|.++..+ |+|.|+|.+.+..  ....+..+.|+|
T Consensus        47 ~~~~~~~~~-~~g~y~C~~~~~~--~~~~s~~~~v~V   80 (80)
T PF13895_consen   47 LFIPNVSPE-DSGNYTCRASNGS--GSNTSTSVNVTV   80 (80)
T ss_dssp             EEESSEEGG-GTEEEEEEEEETT--EEEEEEEEEEEE
T ss_pred             eeeeeeccc-cCEEEEEEEEeCC--CCeEeeeEEeeC
Confidence            778899999 9999999999842  234445555544

...

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=97.21  E-value=0.0013  Score=35.49  Aligned_cols=24  Identities=17%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .|+.+.|.|.+. |.|.|+++|+++
T Consensus        18 ~g~~v~l~C~a~-g~P~p~i~W~~~   41 (94)
T cd05850          18 PEEKVTLGCRAR-ASPPATYRWKMN   41 (94)
T ss_pred             CCCeEEEEeEce-eCCCCEEEEEEC
Confidence            356899999995 899999999975

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.16  E-value=0.0018  Score=35.49  Aligned_cols=36  Identities=28%  Similarity=0.464  Sum_probs=26.8

Q ss_pred             CCEEeCCCCceecCCCcEEEEEEcCCCCCCC-eEEEEe
Q psy5866          60 PPKISPGANPVATEGRAIELVCSTSGGSPDP-QISVTL   96 (98)
Q Consensus        60 ~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~   96 (98)
                      +|.|.......+.+|+.+.|.|.+. +.|.| .+.|..
T Consensus         2 pP~i~~~~s~~~~~G~~~~L~C~~~-s~P~P~~i~W~w   38 (98)
T cd05898           2 PPIISSEQVQYAVRGERGKVKCFIG-STPPPDRIAWAW   38 (98)
T ss_pred             CCEEecCceEEEeCCCcEEEEEEEc-cCCCCcEEEEEE
Confidence            4667555677899999999999996 45555 567754

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.15  E-value=0.0072  Score=41.38  Aligned_cols=77  Identities=18%  Similarity=0.294  Sum_probs=54.5

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC--CeE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD--PQI   92 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~   92 (98)
                      .+.|+|..++.. ++|.|+=++.+.+ +.......+.+..+.+|.. .+   ....+.+|+.+..+|.+..-+|+  ..+
T Consensus       197 ~~~LtI~sltaa-TeGvYtWr~~~~n-~t~~~~~~VtV~~yr~Psv-sv---~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~  270 (486)
T PHA03273        197 KFPLTIKSVDWR-TAGVYVWSLYAKN-GTLVNSTSVTVSTYNAPLV-DL---SVHPSLKGENYRAVCVVASYFPHSSVKL  270 (486)
T ss_pred             ccceEEEecchh-hceEEEEEEecCC-CceeeeeEEEEEEecCCcc-cc---cCCccccCCCceEEEEeeeecCCCceEE
Confidence            467999999999 9999987765532 2334444455555655542 22   34678899999999999877774  468


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      +|+++
T Consensus       271 rWf~d  275 (486)
T PHA03273        271 RWYKN  275 (486)
T ss_pred             EEEeC
Confidence            99975

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=97.15  E-value=0.00054  Score=36.62  Aligned_cols=22  Identities=36%  Similarity=0.732  Sum_probs=19.1

Q ss_pred             EEEEccce-eeccCeEEEEEEEEC
Q psy5866          17 DLIISNAS-FERDNGKFECRLKAA   39 (98)
Q Consensus        17 ~l~I~~v~-~~~d~G~y~C~~~~~   39 (98)
                      .|.|.++. .. |+|.|+|.+.|.
T Consensus        59 ~L~i~~~~~~~-d~G~Y~C~a~N~   81 (91)
T cd04967          59 NLVISNPSKAK-DAGRYQCLASNI   81 (91)
T ss_pred             EEEEecCCccC-CCEEEEEEEEcC
Confidence            58898886 48 999999999985

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=97.11  E-value=0.00066  Score=37.29  Aligned_cols=29  Identities=24%  Similarity=0.204  Sum_probs=24.9

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+..|+.+.|.|.+. |.|+|.+.|+++
T Consensus        12 ~~~~~~~~~~~l~~~v~-g~P~P~v~W~kd   40 (101)
T cd05859          12 LEFANLHEVKEFVVEVE-AYPPPQIRWLKD   40 (101)
T ss_pred             eEEEecCCcEEEEEEEE-EeCCCceEEEEC
Confidence            35677889999999985 899999999986

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.08  E-value=0.0027  Score=35.00  Aligned_cols=35  Identities=14%  Similarity=0.232  Sum_probs=27.9

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..|+|.+++.+ |+|.|+|.+.|.   ....+..+.|.|
T Consensus        65 S~L~L~Rlk~~-E~G~YTf~a~N~---~~~~s~tF~l~v   99 (101)
T cd05860          65 SELHLTRLKGT-EGGTYTFLVSNS---DASASVTFNVYV   99 (101)
T ss_pred             EEEEEeecChh-hCcEEEEEEECC---CCeEEEEEEEEE
Confidence            46899999999 999999999985   455555666655

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=97.05  E-value=0.002  Score=34.79  Aligned_cols=23  Identities=13%  Similarity=0.260  Sum_probs=19.9

Q ss_pred             CCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          74 GRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +..+.|.|.+. |.|.|+++|+++
T Consensus        19 ~~~v~l~C~a~-G~P~P~i~W~k~   41 (93)
T cd05849          19 EGKVSVNCRAR-ANPFPIYKWRKN   41 (93)
T ss_pred             CCeEEEeCcCc-cCCCCEEEEEEC
Confidence            44699999995 899999999975

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.01  E-value=0.0015  Score=35.53  Aligned_cols=29  Identities=10%  Similarity=0.275  Sum_probs=25.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      .+..+.+|+.+.|.|.+. +.|.|.+.|++
T Consensus         5 ~~~tv~~G~tv~L~C~v~-g~~~~~v~W~k   33 (95)
T cd05882           5 QDETVAVGGTVTLKCGVK-EHDNSSLQWSN   33 (95)
T ss_pred             ccEEEecCCcEEEEEEEe-CCCCCeEEEec
Confidence            457889999999999986 68899999976

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=96.99  E-value=0.0018  Score=34.77  Aligned_cols=22  Identities=23%  Similarity=0.543  Sum_probs=17.6

Q ss_pred             EEEEccc-----eeeccCeEEEEEEEEC
Q psy5866          17 DLIISNA-----SFERDNGKFECRLKAA   39 (98)
Q Consensus        17 ~l~I~~v-----~~~~d~G~y~C~~~~~   39 (98)
                      ++.|.++     +.. |+|.|+|.+.|.
T Consensus        55 ~l~i~~v~~~~~~~~-D~G~Y~C~a~N~   81 (95)
T cd05722          55 SLLITSVVHSKHNKP-DEGFYQCVAQND   81 (95)
T ss_pred             eEEEeeeeccCCCCC-cCEEEEEEEECC
Confidence            4666666     578 999999999985

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=96.99  E-value=0.0025  Score=34.62  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=23.2

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEe
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTL   96 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~   96 (98)
                      ...+.+|+.+.|.|.+. |.| +|.+.|++
T Consensus         9 ~~~v~~G~~v~l~C~v~-G~P~~p~i~W~~   37 (96)
T cd05865           9 QGEISVGESKFFLCQVA-GEAKDKDISWFS   37 (96)
T ss_pred             ccEECCCCeEEEEEEEe-CCCCCCEEEEEC
Confidence            34678899999999996 677 57999996

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.98  E-value=0.014  Score=39.79  Aligned_cols=74  Identities=15%  Similarity=0.183  Sum_probs=54.9

Q ss_pred             EEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC--CeEEEE
Q psy5866          18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD--PQISVT   95 (98)
Q Consensus        18 l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~   95 (98)
                      |.|..++.. .+|.|+=...+.+. .......+.+..+.+|.. .+   ....+.+|+.+..+|.+..-+|.  ..++|+
T Consensus       184 L~I~slt~a-TeGvY~Wr~~~~~~-~~~~~~~VtV~~yr~Psv-sv---~~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf  257 (466)
T PHA03270        184 LVIQELTLA-TQGMYYWARGPADR-PHRYGTWTRVRMFRRPSL-SI---RPHAVLEGEPFGATCVAANYYPGDRAAFRWF  257 (466)
T ss_pred             EEEEEcccc-cceEEEEEEecCCC-ceeeeeEEEEEEecCCcc-cc---cCCccccCCCceEEEEeeeecCCCceEEEEE
Confidence            999999999 99999999877543 344445566666655542 22   33578899999999999877774  468999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       258 ~n  259 (466)
T PHA03270        258 EG  259 (466)
T ss_pred             eC
Confidence            75

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=96.94  E-value=0.0083  Score=32.84  Aligned_cols=27  Identities=15%  Similarity=0.099  Sum_probs=21.9

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .....|+|.++...||.|.|.|.|.|.
T Consensus        61 g~~S~L~I~~~~~~d~~g~Y~C~a~N~   87 (98)
T cd05898          61 GVLSTLTINNIMEADFQTHYNCTAWNS   87 (98)
T ss_pred             CcEEEEEECCCccccCCcEEEEEEEeC
Confidence            345679999998872379999999996

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=96.85  E-value=0.0025  Score=33.82  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=23.3

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|+.+.|.|.+. + |.+.+.|+++
T Consensus         5 ~~~v~~g~~v~L~C~~~-~-p~~~i~W~k~   32 (89)
T cd04979           5 VVTVVEGNSVFLECSPK-S-NLASVVWLFQ   32 (89)
T ss_pred             EEEEECCCcEEEEEeCC-C-CCceEEEEEC
Confidence            35678899999999975 4 7789999986

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=96.77  E-value=0.0043  Score=32.16  Aligned_cols=28  Identities=29%  Similarity=0.590  Sum_probs=23.3

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+..|+.+.|.|.+. +.|.+.+.|+++
T Consensus         4 ~~~~~G~~~~l~C~~~-~~p~~~v~W~k~   31 (85)
T cd05729           4 HAVPAGSTVRLKCPAS-GNPRPTITWLKD   31 (85)
T ss_pred             eEecCCCcEEEEEEcC-CCCCCeEEEEEC
Confidence            4556799999999986 678899999875

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=96.75  E-value=0.0039  Score=32.89  Aligned_cols=36  Identities=8%  Similarity=0.178  Sum_probs=25.4

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      +|++...+-+ |.+.|.|++.|.+...........|.
T Consensus        44 ~L~~~~~~~D-dg~~~~C~A~n~a~~~~~~~~~~~l~   79 (80)
T cd05885          44 TIRFPVDRKD-DGAILSCEASHPALVSQKKQTQYSLD   79 (80)
T ss_pred             EEEEEeeecc-CCcEEEEEEEChhhCCCCeeEEEEEe
Confidence            5788777777 89999999999755444444444444

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=96.72  E-value=0.0021  Score=34.77  Aligned_cols=30  Identities=17%  Similarity=0.252  Sum_probs=24.3

Q ss_pred             CceecCCCcEEEEEEcCCC----CCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGG----SPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~   97 (98)
                      ...+.+|+.+.|.|.+.+.    .|.+.+.|+++
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~   41 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKS   41 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEc
Confidence            3567789999999998643    68899999986

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=96.69  E-value=0.003  Score=34.20  Aligned_cols=29  Identities=17%  Similarity=0.326  Sum_probs=25.0

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      ++..+.+|+++.|.|.+. +.|.+.+.|++
T Consensus         5 ~~v~v~eG~~v~L~C~~~-~~p~~~v~W~~   33 (95)
T cd07701           5 QNVTVVEGGTANLTCRVD-QNDNTSLQWSN   33 (95)
T ss_pred             ceEEEecCCcEEEEEEEe-cCCceEEEEeC
Confidence            457899999999999986 67889999974

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=96.69  E-value=0.0046  Score=32.28  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      .|.|.....+ |.|.|+|.+.+.+.. .....++.|.
T Consensus        47 ~L~i~~~~~~-~~~~y~C~a~n~~l~-~~~~~s~~l~   81 (82)
T cd05759          47 TLPITPSDHD-TGRTFTCRARNEALP-TGKETSVTLD   81 (82)
T ss_pred             EEEEeCceec-CCCEEEEEEcCccCC-CCcEEEEEEc
Confidence            5778788887 889999999986432 2234444443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=96.66  E-value=0.0054  Score=33.87  Aligned_cols=29  Identities=17%  Similarity=0.265  Sum_probs=24.2

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|++++|.|....  +...+.|++|
T Consensus         6 ~~~~v~~G~~v~l~C~~~~--~~~~v~Wykq   34 (110)
T cd05899           6 RYLIKGRGQSVTLRCSQTS--GHDNMYWYRQ   34 (110)
T ss_pred             CceEEcCCCcEEEEEEECC--CCCEEEEEEE
Confidence            3467889999999999864  6678999987

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00096 Ig Immunoglobulin domain

Probab=96.65  E-value=0.0039  Score=30.06  Aligned_cols=28  Identities=36%  Similarity=0.648  Sum_probs=24.0

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .......|.|.+++.. |+|.|.|.+.+.
T Consensus        38 ~~~~~~~l~i~~~~~~-d~g~y~C~~~~~   65 (74)
T cd00096          38 TSSGSSTLTISNVTLE-DSGTYTCVASNS   65 (74)
T ss_pred             cceeEEEEEECccCcc-cCcEEEEEEecC
Confidence            4456778999999999 999999999874

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=96.62  E-value=0.0041  Score=34.49  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.8

Q ss_pred             CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .|..+.|.|.+. |.|.+.++|+++
T Consensus        22 ~g~~v~L~C~a~-G~P~p~i~W~k~   45 (109)
T cd05773          22 GSSDANLVCQAQ-GVPRVQFRWAKN   45 (109)
T ss_pred             CCCEEEEEEECc-ccCCCEEEEEEC
Confidence            467899999996 799999999975

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=96.59  E-value=0.0067  Score=31.53  Aligned_cols=28  Identities=21%  Similarity=0.253  Sum_probs=22.7

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|+.+.|.|.+. +. .+.+.|+++
T Consensus         3 ~~~~~~G~~v~l~C~~~-~~-~~~v~W~k~   30 (79)
T cd04973           3 SYSAHPGDLLQLRCRLR-DD-VQSINWTKD   30 (79)
T ss_pred             cEEecCCCCEEEEEEec-CC-CceEEEeeC
Confidence            45678999999999986 44 568999986

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=96.53  E-value=0.0057  Score=32.87  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+|+.+.|.|..  +.|.|.+.|++|
T Consensus         6 ~~~~eG~~v~L~C~~--~~p~p~v~Wykq   32 (91)
T cd05871           6 VYGVENNSTFLECLP--KSPQASVKWLFQ   32 (91)
T ss_pred             EEEecCCcEEEEEEC--CCCCceEEEEEE
Confidence            457789999999995  468899999975

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=96.52  E-value=0.0044  Score=33.05  Aligned_cols=24  Identities=25%  Similarity=0.547  Sum_probs=20.0

Q ss_pred             CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.|.|.+. |.|.|.++|+++
T Consensus        18 ~~~~~~l~C~~~-g~p~p~i~W~k~   41 (91)
T cd04967          18 DEGKVSLNCRAR-GSPPPTYRWLMN   41 (91)
T ss_pred             CCCEEEEEEeee-EcCCCEEEEEEC
Confidence            346799999985 789999999975

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=96.50  E-value=0.011  Score=32.37  Aligned_cols=29  Identities=17%  Similarity=0.226  Sum_probs=23.2

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      ...+.+|++++|.|.+. +.. ...+.|++|
T Consensus         9 ~~~v~~G~~v~L~C~~~-~~~~~~~~~Wyrq   38 (106)
T cd04980           9 TLSVSPGESATISCKAS-QSVSSNYLAWYQQ   38 (106)
T ss_pred             cEEECCCCCEEEEEEEC-CCCCCCcEEEEEE
Confidence            45788999999999975 333 567999987

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.49  E-value=0.0093  Score=33.62  Aligned_cols=35  Identities=9%  Similarity=0.130  Sum_probs=30.4

Q ss_pred             ceeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           3 KVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         3 ~~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+.++..+.+++..+|.|.+++.+ |.+.|.|....
T Consensus        61 ~r~tcs~~~s~ntv~L~l~~L~a~-DTa~Y~Ca~e~   95 (115)
T cd05721          61 DGFNCDGTLGNEQVNFTLQNLRAN-QTDIYFCKIEL   95 (115)
T ss_pred             CCeEEeEeCCCCEEEEEEcCCCHH-HCeEEEEEeee
Confidence            345678889999999999999999 99999997754

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.46  E-value=0.0076  Score=33.06  Aligned_cols=29  Identities=17%  Similarity=0.263  Sum_probs=24.2

Q ss_pred             ceecCCCcEEEEEEcCCCCCC--CeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPD--PQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~   97 (98)
                      ....+|..+++.|.+.+++|.  +.+.|++.
T Consensus        10 ~~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG   40 (99)
T cd07689          10 GPLEEGKPVTVKCEVPDVYPFDRLEIELLKG   40 (99)
T ss_pred             CcccCCceEEEEEEecCcccCCceEEEEecC
Confidence            455899999999999988886  67889864

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=96.46  E-value=0.0048  Score=30.40  Aligned_cols=24  Identities=29%  Similarity=0.652  Sum_probs=19.9

Q ss_pred             CCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          74 GRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      |+.+.|.|.+..+.+.+.+.|+++
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~   24 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKN   24 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEET
T ss_pred             CCeEEEEeecCCCCCCcEEEEEEC
Confidence            678999999844677889999875

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=96.43  E-value=0.015  Score=31.10  Aligned_cols=35  Identities=14%  Similarity=0.281  Sum_probs=26.5

Q ss_pred             CEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          61 PKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      |.+...+...+.+|++++|.|...  .+...+.|+++
T Consensus         3 P~L~a~p~~vV~~G~~VtL~C~~~--~~~~~f~l~k~   37 (91)
T cd05751           3 PSLWAEPSSVVPLGKPVTLRCQGP--YGAVEYRLYRE   37 (91)
T ss_pred             CEEEecCCCccCCCCcEEEEEecC--CCCCEEEEEEC
Confidence            556444567889999999999863  56678888864

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=96.42  E-value=0.013  Score=31.59  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=25.8

Q ss_pred             CEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          61 PKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      |.|...+...+.+|++++|.|....  +...+.|+|+
T Consensus         2 P~l~a~p~~vV~~G~~VTL~C~~~~--~~~~f~l~k~   36 (94)
T cd05711           2 PFLSAHPSPVVPSGENVTLQCHSDI--RFDRFILYKE   36 (94)
T ss_pred             CEEEecCCCccCCCCeEEEEEecCC--CCCEEEEEEC
Confidence            4554445678889999999998643  4567889876

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.38  E-value=0.014  Score=32.42  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=28.3

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..++++|.|+.++.+ |+|.|.-++.+..+  ......+++.|+
T Consensus        67 ~~enlaLlIkaAq~q-DSG~Y~LEvT~~sG--~V~~~~FqVsVF  107 (108)
T PF11465_consen   67 TSENLALLIKAAQPQ-DSGLYCLEVTNESG--KVCTKNFQVSVF  107 (108)
T ss_dssp             ETTTTEEEESS-SGG-G-EEEEEEEEETTS--CEEEEEEEEEEE
T ss_pred             eccCceEEEeecCcc-cCceEEEEEEcCCC--cEEEEEEEEEee
Confidence            344568999999999 99999999998643  334445565554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=96.34  E-value=0.0044  Score=31.06  Aligned_cols=23  Identities=43%  Similarity=0.846  Sum_probs=18.0

Q ss_pred             CCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          73 EGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      .+..+.|+|.+..+.+.+.++|+
T Consensus        14 ~~~~~~l~C~~~~~~~~~~~~W~   36 (75)
T PF13927_consen   14 SGGSVTLTCSAEGGPPPPSISWY   36 (75)
T ss_dssp             TTEEEEEEEEESSEESSEEEEEE
T ss_pred             eceeEEEEEEEccccCCeEEEEE
Confidence            33349999999866558899998

...

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=96.31  E-value=0.0092  Score=28.51  Aligned_cols=24  Identities=33%  Similarity=0.736  Sum_probs=19.7

Q ss_pred             CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +|+.+.|.|.+. +.|.+.+.|++.
T Consensus         1 ~g~~~~l~C~~~-~~~~~~v~W~~~   24 (63)
T smart00408        1 EGQSVTLTCPAE-GDPVPNITWLKD   24 (63)
T ss_pred             CCceEEEEeeCc-cCCCCeEEEEEC
Confidence            478899999964 678889999863

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=96.28  E-value=0.013  Score=30.80  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=18.0

Q ss_pred             EEEEEccceeeccCeEEEEEEEECC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      ..|.|.++  . |+|.|.|.|.|..
T Consensus        49 s~L~i~~~--~-d~g~Y~C~A~N~~   70 (81)
T cd05749          49 SVLNVPGL--N-ETSKFSCEAHNAK   70 (81)
T ss_pred             CEEEEccc--c-CCeEEEEEEEecc
Confidence            36888776  6 8999999999963

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=96.19  E-value=0.013  Score=31.34  Aligned_cols=29  Identities=21%  Similarity=0.248  Sum_probs=23.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+..|+++.|.|.+.  .|.+++.|.++
T Consensus         4 ~~~~v~~G~~v~L~C~~~--~~~~~i~W~~n   32 (87)
T cd05873           4 RQRTFKLGNNAELKCSPK--SNLARVVWKFD   32 (87)
T ss_pred             ceEEEECCCCEEEEEECC--CCCCeEEEEEC
Confidence            346788999999999974  36789999876

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=96.18  E-value=0.013  Score=31.40  Aligned_cols=29  Identities=14%  Similarity=0.291  Sum_probs=24.2

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +...+.+|+++.|.|.+. +.+.+.+.|++
T Consensus         5 ~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~   33 (95)
T cd05717           5 QDVTVVEGGTATLKCRVK-NNDNSSLQWSN   33 (95)
T ss_pred             CcEEEcCCCCEEEEEEEC-CCCCceEEEeC
Confidence            456889999999999985 56788999974

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=96.16  E-value=0.013  Score=31.65  Aligned_cols=28  Identities=18%  Similarity=0.320  Sum_probs=23.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      .+..+.+|+.+.|.|.+. |.|. .+.|++
T Consensus         8 ~~~~v~~G~~v~l~C~~~-G~P~-~v~W~k   35 (92)
T cd05866           8 SKVELSVGESKFFTCTAI-GEPE-SIDWYN   35 (92)
T ss_pred             cceEEcCCCeEEEEEEEE-EeCC-eEEEEe
Confidence            446788999999999985 6887 899996

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=96.14  E-value=0.017  Score=31.62  Aligned_cols=30  Identities=23%  Similarity=0.149  Sum_probs=24.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+++.|.|... +.+...+.|+++
T Consensus         6 ~~v~~~~G~~v~L~C~~~-~~~~~~v~W~k~   35 (109)
T cd04983           6 QSLSVQEGENVTLNCNYS-TSTFYYLFWYRQ   35 (109)
T ss_pred             CceEEcCCCCEEEEEEEC-CCCccEEEEEEE
Confidence            346788999999999986 447788999986

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.13  E-value=0.012  Score=31.92  Aligned_cols=26  Identities=19%  Similarity=0.172  Sum_probs=21.8

Q ss_pred             cCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          72 TEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        72 ~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      .+|....|.|.+.+.+|.. .+.|+++
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~   38 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKN   38 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEEC
Confidence            4577899999999888866 8999976

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=96.01  E-value=0.022  Score=31.72  Aligned_cols=31  Identities=16%  Similarity=0.111  Sum_probs=24.0

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+++.|.|..........+.|++|
T Consensus         7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq   37 (116)
T cd07706           7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ   37 (116)
T ss_pred             CceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence            3467889999999998754334567999987

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=95.96  E-value=0.018  Score=31.95  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=23.7

Q ss_pred             CceecCCCcEEEEEEcCCC-CCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGG-SPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~   97 (98)
                      ...+.+|++++|.|..... .+.+.+.|++|
T Consensus         7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq   37 (116)
T cd04982           7 SITREESKSVTISCKVSGIDFSTTYIHWYRQ   37 (116)
T ss_pred             eEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence            4577889999999997532 46778999986

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=95.89  E-value=0.069  Score=28.69  Aligned_cols=39  Identities=15%  Similarity=0.323  Sum_probs=27.8

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .+..+|.+.+++.. |+|..+|.+...   .........+.|+
T Consensus        48 ~~~ktL~~~qv~~q-dSG~WtC~V~~~---~k~~~~~~~V~Vl   86 (88)
T cd07694          48 QDKKTLNLVQLGPN-DSGTWDCIVSVN---SSEKTLKLDIKVL   86 (88)
T ss_pred             CCccEEEeceeCcc-cCCEEEEEEEEC---ceEEEEEeeEEEE
Confidence            36678999999999 999999999753   3333344444443

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=95.81  E-value=0.021  Score=31.06  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             cEEEEEEcCCCCCCCeEEEEec
Q psy5866          76 AIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        76 ~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.|.+.+|+|.+.++|+++
T Consensus        17 ~~va~C~s~~gkP~a~ItW~~~   38 (95)
T cd05719          17 VTVATCVSANGKPPATISWETT   38 (95)
T ss_pred             cEEEEEECCCCcCCCEEEEEeC
Confidence            3678999999999999999975

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=95.78  E-value=0.023  Score=30.42  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=22.3

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      ...+..|+.+.|.|.+. |.| +.+.|++
T Consensus         9 ~~~v~~G~~~~l~C~~~-G~p-~~i~W~~   35 (92)
T cd04977           9 QGEISVGESKFFLCQVI-GEP-KDISWFS   35 (92)
T ss_pred             cEEECCCCeEEEEEEeE-eeC-CeEEEEC
Confidence            46788999999999986 566 4899986

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=95.75  E-value=0.018  Score=31.31  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCCCCeEEEEec
Q psy5866          77 IELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        77 ~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+.|.+.+|+|++.++|+++
T Consensus        18 ~va~C~s~~gkPaa~IsW~~~   38 (95)
T cd07703          18 PVAKCVSANGRPPARISWSST   38 (95)
T ss_pred             EEEEEEcCCCCCCcEEEEEcC
Confidence            678999999999999999975

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>smart00409 IG Immunoglobulin

Probab=95.75  E-value=0.033  Score=28.05  Aligned_cols=28  Identities=36%  Similarity=0.663  Sum_probs=23.1

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+..|+.+.|.|.+.. .+.+.+.|+++
T Consensus         4 ~~~~~g~~~~l~C~~~~-~~~~~~~W~~~   31 (86)
T smart00409        4 VTVKEGESVTLSCEVSG-SPPPEVTWYKQ   31 (86)
T ss_pred             EEEeCCCeEEEEEEEcc-CCCCeEEEEEC
Confidence            46678999999999874 47889999875

>smart00410 IG_like Immunoglobulin like

Probab=95.75  E-value=0.033  Score=28.05  Aligned_cols=28  Identities=36%  Similarity=0.663  Sum_probs=23.1

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+..|+.+.|.|.+.. .+.+.+.|+++
T Consensus         4 ~~~~~g~~~~l~C~~~~-~~~~~~~W~~~   31 (86)
T smart00410        4 VTVKEGESVTLSCEVSG-SPPPEVTWYKQ   31 (86)
T ss_pred             EEEeCCCeEEEEEEEcc-CCCCeEEEEEC
Confidence            46678999999999874 47889999875

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd00098 IgC Immunoglobulin Constant domain

Probab=95.67  E-value=0.015  Score=30.94  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=21.2

Q ss_pred             cCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          72 TEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        72 ~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      ..|..+.|.|.+.+..| .+.++|+++
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~   37 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKN   37 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEEC
Confidence            46788999999987667 468999975

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=95.54  E-value=0.038  Score=29.78  Aligned_cols=23  Identities=9%  Similarity=0.216  Sum_probs=20.1

Q ss_pred             eEEEEEccceeeccCeEEEEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ...+.|.+++.+ |+|.|.|....
T Consensus        54 ~a~f~I~~~~~~-~~G~Y~C~~~~   76 (94)
T cd05711          54 QASFPLGPVTPA-HAGTYRCYGSY   76 (94)
T ss_pred             EEEEEecCCCcc-cCEEEEEEEEC
Confidence            556899999999 99999999764

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=95.46  E-value=0.02  Score=31.30  Aligned_cols=27  Identities=15%  Similarity=0.187  Sum_probs=21.6

Q ss_pred             ecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      ...+..++|+|.+.+.+| ...+.|+++
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~   41 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVD   41 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEEC
Confidence            335677899999998888 568999875

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.01  E-value=0.054  Score=29.05  Aligned_cols=24  Identities=17%  Similarity=0.369  Sum_probs=20.1

Q ss_pred             CCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          74 GRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      ++.+.|.|.+.+.+|.. .+.|+++
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~   38 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRD   38 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEEC
Confidence            67799999998777865 8999975

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.95  E-value=0.049  Score=29.94  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=20.5

Q ss_pred             CCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      .+..++|.|.+.+.+|.. .+.|+++
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~   40 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQN   40 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEEC
Confidence            456799999999888865 6899875

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=94.79  E-value=0.096  Score=29.36  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=23.1

Q ss_pred             CCceecCCCcEEEEEEcCCCC-CCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGS-PDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~   98 (98)
                      ....+.+|++++|.|...... -...+.|++|.
T Consensus         5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~   37 (117)
T cd04981           5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQA   37 (117)
T ss_pred             CCeEEcCCCCEEEEEEEeCCCcccceEEEEEEC
Confidence            346788999999999864222 13569999873

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.72  E-value=0.066  Score=29.11  Aligned_cols=28  Identities=18%  Similarity=0.254  Sum_probs=21.7

Q ss_pred             eecCCCcEEEEEEcCCC-CC-CCeEEEEec
Q psy5866          70 VATEGRAIELVCSTSGG-SP-DPQISVTLQ   97 (98)
Q Consensus        70 ~~~~g~~~~l~C~~~~~-~p-~~~~~W~~~   97 (98)
                      .+..++.+.|+|.+.+. +| ...++|+++
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~   39 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRG   39 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEEC
Confidence            34457889999999987 56 457999985

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=94.53  E-value=0.059  Score=29.22  Aligned_cols=25  Identities=16%  Similarity=0.201  Sum_probs=19.7

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .+...+|.|.+.+.+|. ..+.|.++
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~   39 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKN   39 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEEC
Confidence            34557999999988885 57899875

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=94.34  E-value=0.058  Score=30.41  Aligned_cols=25  Identities=32%  Similarity=0.498  Sum_probs=20.7

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      ++..+.|.|.+.+.+|. .++.|+++
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kn   42 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVN   42 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEEC
Confidence            45678999999988887 48999975

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=94.12  E-value=0.19  Score=26.99  Aligned_cols=27  Identities=15%  Similarity=0.159  Sum_probs=20.4

Q ss_pred             ceecCCCcEEEEEEcCCC-CCCCeEEEE
Q psy5866          69 PVATEGRAIELVCSTSGG-SPDPQISVT   95 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~-~p~~~~~W~   95 (98)
                      ..+..|++++|+|....+ .|.+.+.|+
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~   36 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWR   36 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEe
Confidence            466789999999998543 445589996

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=94.10  E-value=0.09  Score=28.47  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=20.3

Q ss_pred             cCCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          72 TEGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        72 ~~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      ..|....|.|.+.+.+|. ..+.|+++
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~d   39 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKN   39 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEEC
Confidence            346667899999988885 47899975

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>KOG3515|consensus

Probab=93.98  E-value=0.081  Score=38.60  Aligned_cols=40  Identities=18%  Similarity=0.337  Sum_probs=29.8

Q ss_pred             CCCCCEEeC-CCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          57 PPQPPKISP-GANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        57 ~~~~p~i~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|-.|.+.. .-+..+..|+.+.|.|.+.+++|.+.+.|+.
T Consensus         4 ~p~~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h   44 (741)
T KOG3515|consen    4 PPNVPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYH   44 (741)
T ss_pred             CCCCccccCCCCChhhccCCcceeeeecCCCCCCcceEEEe
Confidence            455555421 1233788999999999999888888999985

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=93.79  E-value=0.043  Score=29.54  Aligned_cols=29  Identities=10%  Similarity=0.151  Sum_probs=22.1

Q ss_pred             ceecCCCcEEEEEEcCCCC----CCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGS----PDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~   97 (98)
                      ..+.+|....|.|....+.    |.|.+.|+++
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~   37 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKD   37 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeEC
Confidence            4567888899999865332    5789999986

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=93.77  E-value=0.24  Score=33.87  Aligned_cols=38  Identities=21%  Similarity=0.403  Sum_probs=27.7

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .++++.+.|++.+ |+|.|+|.+....  .......+.+.|
T Consensus        79 keYsf~~~Nvs~s-dEGrYrCIFYLn~--~EtyrH~I~vrV  116 (500)
T PHA02914         79 KEYSFIEENIGEH-EDGDFKCIFYLGD--NESHKHEILVRK  116 (500)
T ss_pred             ceeEEEecCcccc-cCCcEEEEEEeCC--ceeEEEEEEEEE
Confidence            4688999999999 9999999998742  234444444444

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=93.76  E-value=0.12  Score=28.15  Aligned_cols=24  Identities=17%  Similarity=0.039  Sum_probs=19.4

Q ss_pred             CCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          74 GRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      +....|.|.+.+.+|.. .++|.++
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kn   40 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREG   40 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEEC
Confidence            45689999999888854 6899875

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=93.65  E-value=0.21  Score=27.14  Aligned_cols=29  Identities=17%  Similarity=0.310  Sum_probs=22.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      ++..+.+|+++.|+|.+.. .....+.|++
T Consensus         5 ~nvtv~~G~ta~L~C~v~~-~~~~~v~w~~   33 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKN-NDDSVIQLLN   33 (95)
T ss_pred             CceEEcCCCcEEEEEEEcc-CCccEEEEEe
Confidence            4578899999999999864 4455677763

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=93.49  E-value=0.2  Score=27.86  Aligned_cols=31  Identities=26%  Similarity=0.482  Sum_probs=21.7

Q ss_pred             CCceecCCCcEEEEEEcCCCCC---CCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP---DPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~   97 (98)
                      ....+.+|+.++|.|......+   ...+.|+++
T Consensus         6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~   39 (116)
T cd05715           6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ   39 (116)
T ss_pred             CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence            3457779999999998643222   246899865

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=93.45  E-value=0.19  Score=26.23  Aligned_cols=21  Identities=14%  Similarity=0.271  Sum_probs=13.6

Q ss_pred             EccceeeccCeEEEEEEEECCC
Q psy5866          20 ISNASFERDNGKFECRLKAAGS   41 (98)
Q Consensus        20 I~~v~~~~d~G~y~C~~~~~~~   41 (98)
                      +.....+ +.+.|+|++.+.+.
T Consensus        49 ~~~~~~d-~g~~~~C~v~h~~l   69 (82)
T cd05761          49 FQVDRED-DGAPIICRVDHPAL   69 (82)
T ss_pred             EEcchhh-CCCEEEEEEeChhc
Confidence            3333344 56799999988543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=93.32  E-value=0.23  Score=26.91  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=19.8

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .+..+.|.|.+.+.+|. ..+.|+++
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~   40 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSG   40 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeEC
Confidence            35568999999988885 47899875

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=93.28  E-value=0.17  Score=27.35  Aligned_cols=24  Identities=25%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             CCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          74 GRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      ...+.|.|.+.+.+|. ..+.|+++
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~d   38 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLVD   38 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEEC
Confidence            4558999999988886 67999875

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=93.19  E-value=0.24  Score=30.36  Aligned_cols=30  Identities=10%  Similarity=0.167  Sum_probs=24.0

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|+++.|.|.-..+...+.+.|.++
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~   53 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKN   53 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEc
Confidence            357899999999999643555778999986

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=93.16  E-value=0.3  Score=27.59  Aligned_cols=31  Identities=19%  Similarity=0.144  Sum_probs=21.9

Q ss_pred             CceecCCCcEEEEEEcCCCCCC--CeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPD--PQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~   98 (98)
                      ...+..|..++|+|.+.+..-.  -.+.|+||.
T Consensus         7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~   39 (115)
T cd05721           7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGA   39 (115)
T ss_pred             CeEEcCCCCEEEEEEecCCccccEEEEEEEEeC
Confidence            4567788889999998532222  367899983

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=93.14  E-value=0.17  Score=27.89  Aligned_cols=30  Identities=13%  Similarity=0.303  Sum_probs=25.1

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCe-EEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQ-ISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~   97 (98)
                      ....+.+|+.+.|.|... .+|+|. +.|.+.
T Consensus        11 ~~~~v~~gE~~~L~V~ie-AYP~p~~~~W~~~   41 (101)
T cd05860          11 TTIFVNAGENLDLIVEYE-AYPKPEHQQWIYM   41 (101)
T ss_pred             ceEEEECCCCEEEEEEEE-eCCCCeeeEEEcC
Confidence            346789999999999985 689997 999864

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=93.10  E-value=0.28  Score=25.74  Aligned_cols=34  Identities=9%  Similarity=0.134  Sum_probs=19.0

Q ss_pred             EEEccceeeccCeEEEEEEEECCCCCeeeEeeEEE
Q psy5866          18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTV   52 (98)
Q Consensus        18 l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l   52 (98)
                      |.+.....+ |...|.|++.+.+......+....|
T Consensus        48 l~~~~~~~d-~g~~~tC~v~h~~l~~~~~~~~~~~   81 (83)
T cd07705          48 VEFQVTRED-DGAEITCSVGHESLHDSDRSTSQRI   81 (83)
T ss_pred             EEEEecchh-CCCEEEEEEECcccCCCCceeEEEe
Confidence            334344455 6679999999864333333333333

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=92.94  E-value=0.14  Score=27.29  Aligned_cols=28  Identities=18%  Similarity=0.185  Sum_probs=23.0

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|..+.|.|...  .+.+.+.|+++
T Consensus         5 ~~tv~~g~~v~L~C~~~--s~~A~v~W~~n   32 (85)
T cd05872           5 NRTVAPGADVVLPCQLR--SNLASPVWLFN   32 (85)
T ss_pred             EEEEecCCCEEEECCCC--CCCccEEEEEC
Confidence            45788999999999975  35679999876

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=92.82  E-value=0.2  Score=28.96  Aligned_cols=39  Identities=10%  Similarity=0.198  Sum_probs=23.7

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ...|+++|.+...+.  -.|.|+|.+...   ....+..+.|.+
T Consensus        81 l~kG~aSL~~~~~~a--~~GnYTCeVt~~---~~ege~~i~Lk~  119 (130)
T PF08204_consen   81 LLKGNASLKMDKSDA--VEGNYTCEVTEL---SREGETTIELKY  119 (130)
T ss_dssp             GGGTB--EEEEHHHH--H-EEEEEEEEET---TEEEEEEEEEEE
T ss_pred             hhCCCEEEEEcchhc--cccceEEEEEec---CCCceEEEEEEE
Confidence            346677898887544  479999999875   344444455544

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=92.67  E-value=0.29  Score=27.30  Aligned_cols=31  Identities=23%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             CCceecCCCcEEEEEEcCCCCC---CCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP---DPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~   97 (98)
                      ....+.+|+++.|.|......+   ...+.|+++
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~   39 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFR   39 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEE
Confidence            4567889999999998543222   246999754

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.90  E-value=0.33  Score=26.08  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=22.9

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|+++.|.|..........+.|+++
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~   39 (114)
T PF07686_consen   10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQ   39 (114)
T ss_dssp             EEEEETTSEEEEEEEEESSSSGSEEEEEEE
T ss_pred             eEEEecCCCEEEEEEEeCCCCcceEEEEEE
Confidence            457889999999999762234568999975

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.61  E-value=0.22  Score=25.98  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=21.0

Q ss_pred             cCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          72 TEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        72 ~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      ..+..+.|.|.+.+.+|.. .+.|+++
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~   32 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKN   32 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEET
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEec
Confidence            3478899999999888855 7999864

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PHA02982 hypothetical protein; Provisional

Probab=91.27  E-value=0.42  Score=29.95  Aligned_cols=32  Identities=16%  Similarity=0.268  Sum_probs=25.5

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..+..+....+|+|.+++++ ..|-|+|++...
T Consensus        91 y~~sv~g~~STLTIkk~~i~-N~GCYtc~~ks~  122 (251)
T PHA02982         91 YALSVSGNSSTFTMKKPDPQ-NLGCFTCEAKDA  122 (251)
T ss_pred             EEEEEeccceeEEeccCCcc-cCCceEEEEecC
Confidence            33444455668999999999 999999999873

>cd00098 IgC Immunoglobulin Constant domain

Probab=91.17  E-value=0.18  Score=26.62  Aligned_cols=21  Identities=14%  Similarity=0.487  Sum_probs=17.5

Q ss_pred             EEEccceeeccCeEEEEEEEEC
Q psy5866          18 LIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        18 l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |.|...... |.|.|+|++.+.
T Consensus        64 l~v~~~~~~-~~~~y~C~v~h~   84 (95)
T cd00098          64 LTVSPSDWN-SGDTYTCVVTHE   84 (95)
T ss_pred             EEECHHHhC-CCCCEEEEEEeC
Confidence            567777777 999999999985

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=91.01  E-value=0.53  Score=26.31  Aligned_cols=31  Identities=16%  Similarity=0.019  Sum_probs=21.7

Q ss_pred             CCceecCCCcEEEEEEcCCCC-----CCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGS-----PDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~-----p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.-....     ....+.|++|
T Consensus         7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq   42 (119)
T cd05712           7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKG   42 (119)
T ss_pred             CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeC
Confidence            346788999999999753221     1245899987

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=89.62  E-value=0.88  Score=24.98  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=20.8

Q ss_pred             ecCCCcEEEEEEcCCCC-CC-CeEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGS-PD-PQISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~-p~-~~~~W~~~   97 (98)
                      ...+..++|+|.+.+.+ |. ..+.|.++
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~   44 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPS   44 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEEC
Confidence            33567799999998877 74 57999875

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=88.44  E-value=1.5  Score=24.20  Aligned_cols=28  Identities=14%  Similarity=0.067  Sum_probs=20.7

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+.+|+++.|.|.-. ......++|+|.
T Consensus         8 ~~~~~G~~V~L~v~~~-p~~~~~~~W~kg   35 (105)
T cd05774           8 PQVAEGENVLLLVHNL-PENLLAYAWYKG   35 (105)
T ss_pred             CcccCCCCEEEEecCC-CCCceEEEEEcC
Confidence            4677899999999753 233448999974

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=87.96  E-value=2.2  Score=22.55  Aligned_cols=36  Identities=14%  Similarity=0.125  Sum_probs=21.8

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +|++ ..+.+||...|.|++.+.+-.  .......|.|+
T Consensus        45 ~L~~-~p~~eDdG~~~~C~a~~~~l~--~~~~~~~L~V~   80 (82)
T cd05883          45 QLML-KVTKEDDGVPVICLVDHPAVK--DLQTQRYLEVQ   80 (82)
T ss_pred             EEEE-ECchhhCCCEEEEEEcCcccC--CceeeEEEEEE
Confidence            3455 455552555999999986432  24555666665

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=87.67  E-value=1.2  Score=24.36  Aligned_cols=21  Identities=14%  Similarity=0.417  Sum_probs=17.7

Q ss_pred             EEEEEEcCCCCCCCeEEEEec
Q psy5866          77 IELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        77 ~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +-..|.+.+|+|++.++|.-.
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~   43 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTR   43 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEcc
Confidence            457899889999999999743

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=85.46  E-value=4.7  Score=27.92  Aligned_cols=36  Identities=17%  Similarity=0.136  Sum_probs=26.3

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..+|+|.++..+ ..|-|+|++...   .......-.|.|
T Consensus       345 ~STLTIkka~I~-N~GCY~~~a~~g---~~~~ec~~Cl~V  380 (500)
T PHA02914        345 NSTLTIKKAHIN-NAGCYEAQAFMG---KFKEECRHCFKV  380 (500)
T ss_pred             hceEEeeeEEEE-cCCceEEEEecC---cchhhhhhheEe
Confidence            347999999999 999999999873   344444444444

>PHA03283 envelope glycoprotein E; Provisional

Probab=85.16  E-value=12  Score=26.85  Aligned_cols=77  Identities=18%  Similarity=0.203  Sum_probs=46.0

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC-----CEE--------------eCCCCceecCCCc
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP-----PKI--------------SPGANPVATEGRA   76 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~-----p~i--------------~~~~~~~~~~g~~   76 (98)
                      -.|.|.+++.+ ++|.|+-...+.   .......+.++|..++..     |..              ..=.+....+|++
T Consensus       134 ~~l~I~~at~~-~aGVYtly~r~d---~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDt  209 (542)
T PHA03283        134 SVLQIQRATPN-IAGVYTLHVSSD---GMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDS  209 (542)
T ss_pred             CeeEEEecccc-cCeEEEEEecCC---CceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCc
Confidence            45999999999 999999988864   234444455666541111     110              1112345778888


Q ss_pred             EEEEEEcCCCC----CCCeEEEEe
Q psy5866          77 IELVCSTSGGS----PDPQISVTL   96 (98)
Q Consensus        77 ~~l~C~~~~~~----p~~~~~W~~   96 (98)
                      +.++-......    -...+.|+.
T Consensus       210 f~lsi~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        210 FDLSVHLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             eeEeEEEeeccCCCCceEEEEEEE
Confidence            87765543222    135688874

>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae

Probab=84.24  E-value=4.5  Score=24.29  Aligned_cols=26  Identities=27%  Similarity=0.208  Sum_probs=22.0

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...-|+|++-+++ |+|.|.-++.-.
T Consensus       121 ~~~~lL~i~~p~~~-dsG~Y~lRV~l~  146 (161)
T PF01688_consen  121 ENGVLLRIRNPRPE-DSGIYYLRVWLD  146 (161)
T ss_pred             CcceEEEeCCCCcc-cceEEEEEEEEC
Confidence            33456999999999 999999999875

These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=83.50  E-value=2.5  Score=22.14  Aligned_cols=22  Identities=18%  Similarity=0.244  Sum_probs=13.6

Q ss_pred             EEEccceeeccCeEEEEEEEECC
Q psy5866          18 LIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        18 l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      |.+..-... +...|.|++.+.+
T Consensus        48 L~~~~~~~d-~g~~ytC~v~h~~   69 (83)
T cd05884          48 LDFRVDRSD-DGVAIICRVDHES   69 (83)
T ss_pred             EEEEccccc-CCCEEEEEEechh
Confidence            344433344 5569999998853

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=82.61  E-value=1.9  Score=22.09  Aligned_cols=22  Identities=14%  Similarity=0.285  Sum_probs=16.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      -+|.|..+..+ ..|.|.|.+.+
T Consensus        33 ~tlnLGs~~~D-PRG~Y~C~~s~   54 (69)
T cd07691          33 TLLDLGSRIND-PRGTYSCKESE   54 (69)
T ss_pred             cEEeccCcccC-CCcceEecCcc
Confidence            45667777777 89999998754

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=81.29  E-value=4.7  Score=22.62  Aligned_cols=30  Identities=20%  Similarity=0.235  Sum_probs=21.3

Q ss_pred             CCceecCCCcEEEEEEcCCCC---CCCeEEEEe
Q psy5866          67 ANPVATEGRAIELVCSTSGGS---PDPQISVTL   96 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~---p~~~~~W~~   96 (98)
                      ....+..|+.+.|.|......   +...+.|..
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~   38 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHY   38 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence            446788899999999975322   345799943

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=80.88  E-value=1.7  Score=28.11  Aligned_cols=24  Identities=21%  Similarity=0.319  Sum_probs=20.5

Q ss_pred             EEEEEccceeeccCeEEEEEEEECC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      ..|.+.+...+ ++|.|+|...-..
T Consensus        37 G~L~~~~F~es-mSG~YTCtLsYk~   60 (271)
T PF07354_consen   37 GKLMFKNFQES-MSGSYTCTLSYKP   60 (271)
T ss_pred             ceEEeeccccc-cCCceEEEEEEEe
Confidence            35999999999 9999999987653

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG1480|consensus

Probab=80.80  E-value=0.71  Score=34.16  Aligned_cols=24  Identities=33%  Similarity=0.649  Sum_probs=21.1

Q ss_pred             eEEEEEccceeeccCeEEEEEEEEC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...+.|..+... |.|.|+|++.+-
T Consensus       182 d~~li~~~arls-d~~nytc~a~ni  205 (909)
T KOG1480|consen  182 DHNLIISQARLS-DSGNYTCEATNI  205 (909)
T ss_pred             cCCccccchhhh-hcccceeeeehh
Confidence            446889999999 999999999884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	7e-13
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	8e-13
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	4e-12
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	7e-11
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-08
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-04
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-04
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-04
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-08
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-08
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	9e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-07
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-07
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-07
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-07
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	7e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-06
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	8e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	9e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	9e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	8e-06
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	9e-07
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-06
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-06
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-06
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-06
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-06
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-06
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	7e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	7e-06
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	7e-06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	9e-06
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-06
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-05
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	1e-05
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-05
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	2e-05
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	2e-05
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-05
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	9e-05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-05
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-05
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-05
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	6e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	7e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	8e-05
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	9e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	6e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	8e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	8e-04

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 60.6 bits (146), Expect = 7e-13
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 13  SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANP--V 70
             +  L+++ A    D   + C ++A  +G         + V   P+  ++SP      V
Sbjct: 74  DSQGRLVLAEAQVG-DERDYVCVVRAGAAGTA--EATARLNVFAKPEATEVSPNKGTLSV 130

Query: 71  ATEGRAIELVCSTSGGSPDPQIS 93
             +       C++  G+P P+I+
Sbjct: 131 MEDSAQEIATCNSRNGNPAPKIT 153

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 61.3 bits (148), Expect = 8e-13
 Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 5/91 (5%)

Query: 3   KVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPK 62
           +        +     L +     E D G + C       G    S    + VL  PQ   
Sbjct: 66  EFVAARLGAELRNASLRMFGLRVE-DEGNYTCLFVTFPQGSR--SVDIWLRVLAKPQNTA 122

Query: 63  ISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
                    T        C ++GG P  QI+
Sbjct: 123 EVQ--KVQLTGEPVPMARCVSTGGRPPAQIT 151

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 55.9 bits (134), Expect = 6e-11
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 10  RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANP 69
           RP      + +S    E D G + C      +G         +TV+  P        A  
Sbjct: 86  RPSFTDGTIRLSRLELE-DEGVYICEFATFPTGN--RESQLNLTVMAKPTNWIEGTQAVL 142

Query: 70  VA---TEGRAIELVCSTSGGSPDPQIS 93
            A    + + +   C+++ G P   +S
Sbjct: 143 RAKKGQDDKVLVATCTSANGKPPSVVS 169

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 55.1 bits (132), Expect = 7e-11
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 2   DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
            +V        SG   + ++N     D G ++C+         + ++ + +TVL  P   
Sbjct: 70  GRVHFTSNDVKSGDASINVTNLQLS-DIGTYQCK---VKKAPGVANKKFLLTVLVKPSGT 125

Query: 62  KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
           +     +     G   +L C    GS   Q  
Sbjct: 126 RCF--VDGSEEIGNDFKLKCEPKEGSLPLQFE 155

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 53.1 bits (127), Expect = 3e-10
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 13  SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVAT 72
           +    ++I       D G +EC +            +  VT+      P  S  ++    
Sbjct: 62  TNNLSIVILALRPS-DEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI-SDFEIP 119

Query: 73  EGRAIELVCSTSGGSPDPQIS 93
                 ++CSTSGG P+P +S
Sbjct: 120 TSNIRRIICSTSGGFPEPHLS 140

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 48.5 bits (115), Expect = 2e-08
 Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 6   IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP 65
             D    +  + L+++ A+    +G + CR      G+   ++   ++V+ P      S 
Sbjct: 57  FFDIHRSANTFFLVVTAAN-ISHDGNYLCR---MKLGETEVTKQEHLSVVKPLTLSVHSE 112

Query: 66  GANPVATEGRAIELVCSTSGGSPDPQIS 93
                  +   + + C+ +   P P + 
Sbjct: 113 --RSQFPDFSVLTVTCTVN-AFPHPHVQ 137

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 49.0 bits (116), Expect = 2e-08
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 9   YRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-PPKISPGA 67
           + P+     + I N           C   A   G  LHS  +T+ V    +  P +S   
Sbjct: 139 FVPNPKAG-ITIKNVKRAYHRLCVRCA--AQRDGTWLHSDKFTLKVREAIKAIPVVSVPE 195

Query: 68  NP-VATEGRAIELVCSTSGGSPDPQIS 93
              +  +G    +VC+    S      
Sbjct: 196 TSHLLKKGDTFTVVCTIKDVSTSVNSM 222

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 13  SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-PPKISPGANP-V 70
             +  ++I +           C       G+ + S+ + + V    +  P +S      +
Sbjct: 165 DPKAGIMIKSVKRAYHRLCLHCS--VDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYL 222

Query: 71  ATEGRAIELVCSTSGGSPDPQIS 93
             EG    + C+    S     +
Sbjct: 223 LREGEEFTVTCTIKDVSSSVYST 245

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 48.0 bits (114), Expect = 4e-08
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 2   DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
           +      +  +S   +L I   +    NG + C            S   +VTV      P
Sbjct: 120 NGKAFKFFHWNS---NLTILKTNIS-HNGTYHCS---GMGKHRYTSAGISVTVKELFPAP 172

Query: 62  KISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95
            ++        EG  + L C T      P + + 
Sbjct: 173 VLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLY 206

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
             I++AS   D+G++ C+   +G    +  +++   +L   Q        + V TEG  +
Sbjct: 50  YRITSASVN-DSGEYRCQRGLSGRSDPIQLEIHRGWLL--LQVS------SRVFTEGEPL 100

Query: 78  ELVCSTSGGSPDPQIS 93
            L C          + 
Sbjct: 101 ALRCHAWKDKLVYNVL 116

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 47.6 bits (113), Expect = 4e-08
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 18  LIISNASFERDNGKFECRLKAA-GSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
           +   + + E D G + C    +   G         + VL PP   K +      AT G  
Sbjct: 70  ITFKSVTRE-DTGTYTCM--VSEEGGNSYGEVKVKLIVLVPPS--KPTVNIPSSATIGNR 124

Query: 77  IELVCSTSGGSPDPQIS 93
             L CS   GSP  + +
Sbjct: 125 AVLTCSEQDGSPPSEYT 141

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 47.6 bits (113), Expect = 6e-08
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 13/104 (12%)

Query: 2   DKVEIIDYRPDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55
           ++          G+Y      +L I     E     ++CR K   +G+   S      V+
Sbjct: 179 EEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 238

Query: 56  TPP----QPPKISPG--ANPVATEGRAIELVCSTSGGSPDPQIS 93
           T P     P  +S         +    + L+C    G P P   
Sbjct: 239 TEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ-GYPVPVFR 281

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 9/89 (10%)

Query: 11  PDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS 64
           P + +        LII N     D   + C   A             V V+  P+    +
Sbjct: 568 PINRKQKVFPNGTLIIENVERNSDQATYTCV--AKNQEGYSARGSLEVQVMVLPRIIPFA 625

Query: 65  PGANPVATEGRAIELVCSTSGGSPDPQIS 93
               P    G+ + L CS  GG     I 
Sbjct: 626 FEEGPA-QVGQYLTLHCSVPGGDLPLNID 653

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 14/97 (14%)

Query: 2   DKVEIIDYRPDSGRYD--LIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPP 58
           D+ ++  Y   +G     L I++     D G ++C  K   G           + V   P
Sbjct: 474 DRYQVGQYVTVNGDVVSYLNITSVHAN-DGGLYKCIAKSKVGVA----EHSAKLNVYGLP 528

Query: 59  QPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT 95
               I          G  + + C  +G    P  S+ 
Sbjct: 529 ---YIRQMEKKAIVAGETLIVTCPVAG---YPIDSIV 559

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG-ANPVATEGRA 76
           L I +   E D G ++C        +   +    + +     PP I           G +
Sbjct: 391 LRIESVKKE-DKGMYQCF--VRNDRESAEASAE-LKLGGRFDPPVIRQAFQEETMEPGPS 446

Query: 77  IELVCSTSGGSPDPQIS 93
           + L C    G+P P+IS
Sbjct: 447 VFLKCVAG-GNPTPEIS 462

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 17  DLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGR 75
            L I         G F C  +  AG           + V  PP+   I    +    +G 
Sbjct: 678 VLTIEAVEAS-HAGNFTCHARNLAGHQ----QFTTPLNVYVPPRW--ILEPTDKAFAQGS 730

Query: 76  AIELVCSTSGGSPDPQIS 93
             ++ C    G P PQ++
Sbjct: 731 DAKVECKAD-GFPKPQVT 747

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 47.6 bits (113), Expect = 6e-08
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 18  LIISNASFERDNGKFECRLKAA-GSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
           L I       D G + C       +  +++ +   V V  PP         N  A  G++
Sbjct: 157 LQIRGIKKT-DEGTYRCE--GRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQS 213

Query: 77  IELVCSTSGGSPDPQIS 93
           + LVC    G P+P +S
Sbjct: 214 VTLVCDAD-GFPEPTMS 229

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 8/89 (8%)

Query: 6   IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP 65
           I     D     L I NA+ + D G ++C                 V +    Q      
Sbjct: 52  ISVVWNDDDSSTLTIYNANID-DAGIYKCV--VTAEDGTQSEATVNVKI---FQKLMFKN 105

Query: 66  GANPV-ATEGRAIELVCSTSGGSPDPQIS 93
              P    EG    +VC     S  P I 
Sbjct: 106 APTPQEFKEGEDAVIVCDVV-SSLPPTII 133

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 46.7 bits (111), Expect = 8e-08
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
           L I N +   D G + C  +    G+ +  +   V V  PP         N  A  G  +
Sbjct: 59  LQILNINKS-DEGIYRCEGRVEARGE-IDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 116

Query: 78  ELVCSTSGGSPDPQIS 93
              C  S GSP+P IS
Sbjct: 117 TFSCRAS-GSPEPAIS 131

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 47.1 bits (112), Expect = 9e-08
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
           L I N +   D G + C  +    G+ +  +   V V  PP         N  A  G  +
Sbjct: 155 LQILNINKS-DEGIYRCEGRVEARGE-IDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 212

Query: 78  ELVCSTSGGSPDPQIS 93
              C  S GSP+P IS
Sbjct: 213 TFSCRAS-GSPEPAIS 227

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 18  LIISNASFERDNGKFECRLKAA-GSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
           +  S+ +  +DNG++ C    +   GQ+       +TVL PP   K +       T G  
Sbjct: 67  ITFSSVT-RKDNGEYTCM--VSEEGGQNYGEVSIHLTVLVPPS--KPTISVPSSVTIGNR 121

Query: 77  IELVCSTSGGSPDPQIS 93
             L CS   GSP  + S
Sbjct: 122 AVLTCSEHDGSPPSEYS 138

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 7   IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
                D     L  +NA+F+ + G + C     G      + ++ + V  P +P  +   
Sbjct: 42  WTLYSDGSSSILSTNNATFQ-NTGTYRCT--EPGDPLGGSAAIH-LYVKDPARPWNVLAQ 97

Query: 67  ANPVATEGRAIELVCSTSGGSPDPQIS 93
              V  E +   L C  +    +  +S
Sbjct: 98  -EVVVFEDQDALLPCLLTDPVLEAGVS 123

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 11/90 (12%)

Query: 11  PDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL-TPPQPPKI 63
                Y         I  A F   +  ++C   A   G+ + S    + V    P PP +
Sbjct: 133 MRHTNYSFSPWHGFTIHRAKFI-QSQDYQCS--ALMGGRKVMSISIRLKVQKVIPGPPAL 189

Query: 64  SPG-ANPVATEGRAIELVCSTSGGSPDPQI 92
           +   A  V   G A ++VCS S    +  +
Sbjct: 190 TLVPAELVRIRGEAAQIVCSASSVDVNFDV 219

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 11  PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG---- 66
            D     L I      RD   +EC    A +     S    +TVL   Q P+  P     
Sbjct: 58  DDGSGSVLRIQPLRTPRDEAIYECV---ASNNVGEISVSTRLTVLREDQIPRGFPTIDMG 114

Query: 67  -ANPVATEGRAIELVCSTSGGSPDPQIS 93
               V    R   ++C+ S G+PDP+I+
Sbjct: 115 PQLKVVERTRTATMLCAAS-GNPDPEIT 141

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 45.5 bits (107), Expect = 3e-07
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 2   DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
            +  I+     +G+  L I N +   D+GK+ C  +    G      +  + V       
Sbjct: 69  GRTSILRDGITAGKAALRIHNVTAS-DSGKYLCYFQ---DGDFYEKALVELKVAALGSDL 124

Query: 62  KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
            +         +   I L C ++G  P PQI 
Sbjct: 125 HVDV----KGYKDGGIHLECRSTGWYPQPQIQ 152

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 14/95 (14%)

Query: 2   DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-- 59
           + VE+   R ++   +  I+    E D+G++ C      +         T+ V   P   
Sbjct: 42  NGVELTATRKNASNMEYRINKPRAE-DSGEYHCVYHFVSA----PKANATIEVKAAPDIT 96

Query: 60  -PPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
              +     +    EG+   + C +  G P P+  
Sbjct: 97  GHKR-----SENKNEGQDAMMYCKSV-GYPHPEWM 125

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 45.3 bits (107), Expect = 4e-07
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
           L + + +   D G +EC           HS    + VL  P  P ISP +      G  +
Sbjct: 344 LTLLSVTRN-DVGPYECG--IQNELSVDHSDPVILNVLYGPDDPTISP-SYTYYRPGVNL 399

Query: 78  ELVCSTSGGSPDPQIS 93
            L C  +  +P  Q S
Sbjct: 400 SLSCHAA-SNPPAQYS 414

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 42.6 bits (100), Expect = 4e-06
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
           L + N +   D   + C      S     S   T+ VL  P  P ISP  +     G  +
Sbjct: 522 LTLFNVTRN-DARAYVCG--IQNSVSANRSDPVTLDVLYGPDTPIISP-PDSSYLSGANL 577

Query: 78  ELVCSTSGGSPDPQIS 93
            L C ++  +P PQ S
Sbjct: 578 NLSCHSA-SNPSPQYS 592

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 8   DYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPG 66
             +  +G   L + N +   D   ++C  +    + +   S    + VL  P  P ISP 
Sbjct: 156 RLQLSNGNRTLTLFNVTRN-DTASYKCETQNPVSARR---SDSVILNVLYGPDAPTISP- 210

Query: 67  ANPVATEGRAIELVCSTSGGSPDPQIS 93
            N     G  + L C  +  +P  Q S
Sbjct: 211 LNTSYRSGENLNLSCHAA-SNPPAQYS 236

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 41.9 bits (98), Expect = 7e-06
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 17  DLIISNASFERDNGKFECRLKAAGS--GQDLHSQVYTVTVLTPPQPPKISPGANPVATEG 74
           +L I N +   ++G + C+   A +       + V T+TV   P  P I+   +    + 
Sbjct: 249 ELFIPNIT-VNNSGSYTCQ---AHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDE 304

Query: 75  RAIELVCSTSGGSPDPQI 92
            A+ L C          +
Sbjct: 305 DAVALTCE-PEIQNTTYL 321

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 9/93 (9%)

Query: 2   DKVEIIDYRPDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55
              +       SGR        L+I N   + D G +   +  +    +  +  + V   
Sbjct: 51  GTQQATPGPAYSGREIIYPNASLLIQNII-QNDTGFYTLHVIKSDLVNEEATGQFRVYPE 109

Query: 56  TPPQPPKISPGANPVATEGRAIELVCSTSGGSP 88
            P  P   S  + PV  +  A+   C       
Sbjct: 110 LPK-PSISSNNSKPV-EDKDAVAFTCEPETQDA 140

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 38.4 bits (89), Expect = 9e-05
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 18  LIISNASFERDNGKFECRLKAAGS-GQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
           L ISN + + ++G + C+  A  S      + V T+TV      P IS   +    +  A
Sbjct: 428 LFISNITEK-NSGLYTCQ--ANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDA 484

Query: 77  IELVCSTSGGSPDPQI 92
           +   C          +
Sbjct: 485 VAFTCE-PEAQNTTYL 499

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 44.5 bits (104), Expect = 6e-07
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 11  PDSGRYDLIISNASFERDNGKFECRLKAAGS----GQDLHSQVYTVTVLTPPQPPKISPG 66
            +     L +++   + D G++ C++         G D  S V  VT  TP     +S  
Sbjct: 85  ANLAAPTLRLTHVHPQ-DGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTA 143

Query: 67  ANPVATEGRAIELVCSTSGGSPDPQIS 93
                 EG  I + C  +    +  ++
Sbjct: 144 EVVQVDEGNDITMTCPCT-DCANANVT 169

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 44.6 bits (105), Expect = 7e-07
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 2   DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
                    P+S    L   NA+F+ + G + C            + ++ + V  P    
Sbjct: 37  PISPYWTLDPESPGSTLTTRNATFK-NTGTYRCT--ELEDPMAGSTTIH-LYVKDPAHSW 92

Query: 62  KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
            +         EG+   L C  +  +    +S
Sbjct: 93  NLLAQ-EVTVVEGQEAVLPCLITDPALKDSVS 123

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 13  SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKISPGA-NPV 70
           S     II  A    D+  + C+     +G++  S    + V    P+PP+I       V
Sbjct: 141 SPWRGFIIRKAKVL-DSNTYVCK--TMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLV 197

Query: 71  ATEGRAIELVCSTSGGSPDPQIS 93
              G A ++VCS +  +      
Sbjct: 198 RIRGEAAQIVCSAT-NAEVGFNV 219

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 43.8 bits (103), Expect = 8e-07
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 13  SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVAT 72
           +  Y L +SN   E D G +  ++    S +      YT+ +L   +  +++  +     
Sbjct: 67  TQSYSLQLSNLKME-DTGSYRAQISTKTSAK---LSSYTLRILRQLRNIQVTNHSQLFQN 122

Query: 73  EGRAIELVCSTSGGSPDPQIS 93
               + L CS      +    
Sbjct: 123 MTCELHLTCSVEDADDNVSFR 143

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 44.3 bits (104), Expect = 9e-07
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 28  DNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGS 87
           ++  + C+       +++ S  Y V  L              V  +G  I L+C    G+
Sbjct: 152 EDRSYICK--TTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVI-GN 208

Query: 88  PDPQIS 93
                 
Sbjct: 209 EVVNFE 214

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 42.0 bits (98), Expect = 6e-06
 Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 3   KVEIIDYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPP 61
             E+   +  +    L ++N +   D G++ C    + G   D   ++Y + V  P    
Sbjct: 38  PQEMAKAQDGTFSSVLTLTNLTGL-DTGEYFCTHNDSRGLETDERKRLY-IFVPDPTVGF 95

Query: 62  KISPGANPV--ATEGRAIELVCSTSGGSPDPQIS 93
             +         TE   I + C  +   P   ++
Sbjct: 96  LPNDAEELFIFLTEITEITIPCRVTD--PQLVVT 127

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 44.5 bits (104), Expect = 9e-07
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 27  RDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGG 86
           +++ +  C            +    +TV   P+  +++P        G+ + L C   GG
Sbjct: 58  QEDSQPMCYSNCPDGQS---TAKTFLTVYWTPERVELAPL-PSWQPVGKNLTLRCQVEGG 113

Query: 87  SPDPQISVTL 96
           +P   ++V L
Sbjct: 114 APRANLTVVL 123

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 41.8 bits (97), Expect = 8e-06
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 22  NASFERDNGKFECRLKAAGSGQDLH-SQVYTVTVLTPPQPPKISPGANPVATEGRAIELV 80
            A+ E +   F C      +GQ +H +Q   + VL  P+  +     N    E      +
Sbjct: 332 KATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 391

Query: 81  CSTSGGSPDPQIS 93
           C    G+P P++ 
Sbjct: 392 CQAW-GNPLPELK 403

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 43.7 bits (103), Expect = 9e-07
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
           L I +   + D   ++  +     G+++  +++ + +      PKIS             
Sbjct: 68  LKIKHLKTD-DQDIYKVSIYDT-KGKNVLEKIFDLKIQERVSKPKIS-------WTCINT 118

Query: 78  ELVCSTSGGSPDPQIS 93
            L C    G  DP+++
Sbjct: 119 TLTCEVMNG-TDPELN 133

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 43.8 bits (103), Expect = 1e-06
 Identities = 11/100 (11%), Positives = 26/100 (26%), Gaps = 14/100 (14%)

Query: 7   IDYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQ------------DLHSQVYTVT 53
           +    ++G  ++ +     E D G +  +L+    +                    +   
Sbjct: 157 MHIDRNTGIIEMFMEKLQDE-DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQ 215

Query: 54  VLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
                Q P      +   T    + L C  +    +  I 
Sbjct: 216 EWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIV 255

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 8/99 (8%), Positives = 24/99 (24%), Gaps = 11/99 (11%)

Query: 2   DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQ- 59
            ++E+        +  +   +   + D G + C +    G           +  L     
Sbjct: 47  PRLEV---ESKGNKTKMTFKDLGMD-DLGIYSCDVTDTDGIASSYLIDEEELKRLLALSH 102

Query: 60  -----PPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
                   +         E   +         S + +++
Sbjct: 103 EHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVN 141

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 1/92 (1%)

Query: 2   DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
            +VE+ +         L I       D G ++C  +       ++  V            
Sbjct: 72  QRVEVTECSDGLFCKTLTIPKVIGN-DTGAYKCFYRETDLASVIYVYVQDYRSPFIASVS 130

Query: 62  KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
                      + + + + C  S  + +  + 
Sbjct: 131 DQHGVVYITENKNKTVVIPCLGSISNLNVSLC 162

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 42.8 bits (100), Expect = 3e-06
 Identities = 12/83 (14%), Positives = 19/83 (22%), Gaps = 3/83 (3%)

Query: 13  SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVAT 72
             +    I +       G   C  K              V V        +SP      +
Sbjct: 180 DSKKGFTIPSYMIS-YAGMVFCEAKIND-ESYQSIMYIVVVVGYRIYDVVLSPSHGIELS 237

Query: 73  EGRAIELVCSTSGGSPDPQISVT 95
            G  + L C+      +  I   
Sbjct: 238 VGEKLVLNCTAR-TELNVGIDFN 259

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 42.1 bits (98), Expect = 7e-06
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 12  DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPV- 70
            +    + + NAS + D G + C  +     +  H  V  +TV      P I+       
Sbjct: 621 TNDILIMELKNASLQ-DQGDYVCLAQDRK-TKKRHCVVRQLTV-LERVAPTITGNLENQT 677

Query: 71  ATEGRAIELVCSTSGGSPDPQIS 93
            + G +IE+ C+ S G+P PQI 
Sbjct: 678 TSIGESIEVSCTAS-GNPPPQIM 699

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 20/93 (21%), Positives = 26/93 (27%), Gaps = 6/93 (6%)

Query: 2   DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
           D               L I   +   D G + C    A SG         V V   P   
Sbjct: 276 DLKTQSGSEMKKFLSTLTIDGVTRS-DQGLYTCA---ASSGLMTKKNSTFVRVHEKPFVA 331

Query: 62  KIS-PGANPVATEGRAIELVCSTSGGSPDPQIS 93
             S   +   AT G  + +      G P P+I 
Sbjct: 332 FGSGMESLVEATVGERVRIPAKYL-GYPPPEIK 363

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 18/77 (23%), Positives = 24/77 (31%), Gaps = 3/77 (3%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-PPKISPGANPVATEGRA 76
           L I   S   D G +   L      ++  S V ++ V  PPQ   K           G  
Sbjct: 383 LTIMEVSER-DTGNYTVILTNP-ISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTT 440

Query: 77  IELVCSTSGGSPDPQIS 93
             L C+     P   I 
Sbjct: 441 QTLTCTVYAIPPPHHIH 457

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 13  SGRYDLIISNASFERDNGKFECRLKAAGSGQDLH-SQVYTVTVLTPPQPPKISPGANPVA 71
            G    ++  A+ E +   F C      +GQ +H +Q   + VL  P+  +     N   
Sbjct: 138 LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTW 197

Query: 72  TEGRAIELVCSTSGGSPDPQIS 93
            E      +C    G+P P++ 
Sbjct: 198 PENSQQTPMCQAW-GNPLPELK 218

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 12/79 (15%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP---QPPKISPGANPVATEG 74
           L I +   + D+G + C   A             + V   P   +PP      N    EG
Sbjct: 64  LTILSVE-DSDDGIYCCT--ANNGVGGAVESCGALQVKMKPKITRPPI-----NVKIIEG 115

Query: 75  RAIELVCSTSGGSPDPQIS 93
               L C+T  G+P P +S
Sbjct: 116 LKAVLPCTTM-GNPKPSVS 133

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 41.8 bits (98), Expect = 4e-06
 Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 16/101 (15%)

Query: 7   IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP-------- 58
           +    ++G  ++ +     E D G +  +L+  G   +  + V    V            
Sbjct: 52  MHIDRNTGIIEMFMEKLQDE-DEGTYTFQLQD-GKATNHSTVVLVGDVFKKLQKEAEFQR 109

Query: 59  ------QPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
                 Q P      +   T    + L C  +    +  I 
Sbjct: 110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIV 150

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 41.7 bits (97), Expect = 5e-06
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
           L ++  SF  +   + C             +   V + + P+ P+I    +     G+ I
Sbjct: 56  LTMNPVSFG-NEHSYLCTAT---CESRKLEKGIQVEIYSFPKDPEIHL--SGPLEAGKPI 109

Query: 78  ELVCSTSGGSPDPQISVTL 96
            + CS +   P  ++ + L
Sbjct: 110 TVKCSVADVYPFDRLEIDL 128

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 41.7 bits (98), Expect = 6e-06
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPG-----ANPVAT 72
           L I      RD   +EC    A +     +    +TVL   Q P   P         V  
Sbjct: 65  LRIQPLRTPRDENVYECV---AQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121

Query: 73  EGRAIELVCSTSGGSPDPQIS 93
             R   ++C+ S G+PDP+I+
Sbjct: 122 RTRTATMLCAAS-GNPDPEIT 141

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 41.2 bits (97), Expect = 7e-06
 Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 8/84 (9%)

Query: 12  DSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQ-PPKISPGANP 69
           D   + L +     E D G + C      G           + +   PQ  P        
Sbjct: 59  DGRTHTLTVMTEEQE-DEGVYTCIATNEVGE----VETSSKLLLQATPQFHPGYPLKEKY 113

Query: 70  VATEGRAIELVCSTSGGSPDPQIS 93
               G  + L      G P P ++
Sbjct: 114 YGAVGSTLRLHVMYI-GRPVPAMT 136

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 41.6 bits (97), Expect = 7e-06
 Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 9   YRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQ--PPKI-S 64
           +    G   L++ + + E D G + C L  A    Q   ++   + +    +   P I S
Sbjct: 173 FLSVRGTTHLLVHDVALE-DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIIS 231

Query: 65  PGANPVATEGRAIELVCSTSGGSPDPQISVT 95
           P     A+ G  + + C    G+  P  ++ 
Sbjct: 232 PLKTISASLGSRLTIPCKVFLGTGTPLTTML 262

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 36.2 bits (83), Expect = 6e-04
 Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 8/80 (10%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
           L +  A  E D+G + C      +          + V               + T   + 
Sbjct: 83  LWLLPALQE-DSGTYVCT---TRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSG 138

Query: 78  ELVCSTSG----GSPDPQIS 93
            LVC           D +I 
Sbjct: 139 VLVCPDLSEFTRDKTDVKIQ 158

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 41.8 bits (97), Expect = 7e-06
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 27  RDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGG 86
           +++ +  C            +    +TV   P+  +++P        G+ + L C   GG
Sbjct: 58  QEDSQPMCYSNCPDGQS---TAKTFLTVYWTPERVELAP-LPSWQPVGKNLTLRCQVEGG 113

Query: 87  SPDPQISVTL 96
           +P   ++V L
Sbjct: 114 APRANLTVVL 123

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 41.3 bits (97), Expect = 8e-06
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
           L +   +   D G++ C      +G+D  S    + V  PP+  K     + +  +    
Sbjct: 255 LTVLKVTKG-DAGQYTCYASNV-AGKDSCS--AQLGVQEPPRFIK-KLEPSRIVKQDEHT 309

Query: 78  ELVCSTSGGSPDPQIS 93
              C    GSP+ ++ 
Sbjct: 310 RYECKIG-GSPEIKVL 324

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 41.4 bits (96), Expect = 9e-06
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVAT-EGRA 76
           L I+N +    + ++ C         D    +    +    +PP   P    + T +   
Sbjct: 91  LWIANYTSNDSHRRYLCT--VTTKNGDCVQGIVRSHIR---KPPSCIPETYELGTHDKYG 145

Query: 77  IELVCSTSGGSPDPQIS 93
           I+L C          I+
Sbjct: 146 IDLYCGILYAKHYNNIT 162

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 41.4 bits (97), Expect = 9e-06
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 18  LIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
           L+      E D G + C +    G  Q        +TV++ P+  +  P    V  +G+ 
Sbjct: 272 LLFKTTLPE-DEGVYTCEVDNGVGKPQ---KHSLKLTVVSAPKY-EQKPEKVIVVKQGQD 326

Query: 77  IELVCSTSGGSPDPQIS 93
           + + C  + G P P + 
Sbjct: 327 VTIPCKVT-GLPAPNVV 342

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 39.5 bits (92), Expect = 4e-05
 Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 9   YRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGA 67
            R D G   L+        D G ++C  +  AG      S+V +         P  +   
Sbjct: 57  LRKDEGS--LVFLRPQ-ASDEGHYQCFAETPAGV---ASSRVISFRKTYLIASPAKTH-- 108

Query: 68  NPVATEGRAIELVCSTSGGSPDPQIS 93
                EGR  +L C      P P I+
Sbjct: 109 EKTPIEGRPFQLDCVLPNAYPKPLIT 134

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 6/86 (6%)

Query: 11  PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPV 70
                    + +        +  C        +        +     P   ++ P   P 
Sbjct: 47  RGLRWLARQLVDIR--EPETQPVCF---FRCARRTLQARGLIRTFQRPDRVELMP-LPPW 100

Query: 71  ATEGRAIELVCSTSGGSPDPQISVTL 96
              G    L C   G  P   +++TL
Sbjct: 101 QPVGENFTLSCRVPGAGPRASLTLTL 126

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 12  DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ---PPKISPGAN 68
             G + LII++ + + D   ++ R  A   G  +      + V  P +   P  +     
Sbjct: 58  KGGYHQLIIASVTDD-DATVYQVR--ATNQGGSVSGTAS-LEVEVPAKIHLPKTLEGMGA 113

Query: 69  PVATEGRAIELVCSTSGGSPDPQIS 93
             A  G  + +    S G PDP I+
Sbjct: 114 VHALRGEVVSIKIPFS-GKPDPVIT 137

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 11  PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT----PPQPPKISPG 66
              G   L I      RD+  +EC   A     D  S   T+T+      P   P I+ G
Sbjct: 59  QPGGISILRIEPVRAGRDDAPYECV--AENGVGDAVSADATLTIYEGDKTPAGFPVITQG 116

Query: 67  -ANPVATEGRAIELVCSTSGGSPDPQIS 93
               V   G  + + C    G+P P I 
Sbjct: 117 PGTRVIEVGHTVLMTCKAI-GNPTPNIY 143

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 27  RDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGG 86
           +++ +  C            +    +TV   P+  +++P        G+ + L C   GG
Sbjct: 58  QEDSQPMCYSNCPDGQS---TAKTFLTVYWTPERVELAP-LPSWQPVGKQLTLRCQVEGG 113

Query: 87  SPDPQISVTL 96
           +P  Q++V L
Sbjct: 114 APRAQLTVVL 123

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 12/91 (13%)

Query: 6   IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP---QPPK 62
           I     D     L I NA+ + D G ++C                 V +         P 
Sbjct: 52  ISVVWNDDDSSTLTIYNANID-DAGIYKCV--VTAEDGTQSEATVNVKIFQKLMFKNAPT 108

Query: 63  ISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
                     EG    +VC     S  P I 
Sbjct: 109 -----PQEFKEGEDAVIVCDVV-SSLPPTII 133

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 39.4 bits (91), Expect = 2e-05
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 12  DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI 63
                 + ISN +   D G++ C +        + +    VTVL  PQ P I
Sbjct: 99  TPHELSISISNVA-LADEGEYTCSI----FTMPVRTAKSLVTVLGIPQKPII 145

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 9   YRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQ---DLHSQVYTVTVLTPPQPPKIS 64
           +    G   L+I+  S + D G +E  LK   G  +    L  + +   ++   +   +S
Sbjct: 54  HDFKDGICTLLITEFSKK-DAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALS 112

Query: 65  PGANPVATEGRAIELVCSTSGGSPDPQIS 93
                + +    I+L    +    D +++
Sbjct: 113 ATDLKIQSTAEGIQLYSFVTYYVEDLKVN 141

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 39.2 bits (91), Expect = 4e-05
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 15/92 (16%)

Query: 2   DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
           D+ +      D G + LII N     D+  + C +      Q    Q+    +       
Sbjct: 54  DRADSRRSLWDQGNFPLIIKNLK-IEDSDTYICEV----EDQKEEVQLLVFGLTANS--- 105

Query: 62  KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
                 +    +G+++ L   +      P + 
Sbjct: 106 ------DTHLLQGQSLTLTLESP-PGSSPSVQ 130

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 18  LIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
           L+I+N +  +D G ++C    + G+   + S+   +           +     V   G+ 
Sbjct: 64  LLINNPNKTQDAGTYQCIATNSFGT---IVSREAKLQFAYLENFKTRTRSTVSVR-RGQG 119

Query: 77  IELVCSTSGGSPDPQIS 93
           + L+C     S +   +
Sbjct: 120 MVLLCGPPPHSGELSYA 136

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 38.7 bits (90), Expect = 9e-05
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 14/95 (14%)

Query: 11  PDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS 64
            D+ R+      +L I+      D G + C +    +   +      + +       +  
Sbjct: 146 QDNRRFVSQETGNLYIAKVEKS-DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYE 204

Query: 65  PG------ANPVATEGRAIELVCSTSGGSPDPQIS 93
           P           A +G  ++L C    G+P P I 
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFAL-GNPVPTIL 238

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 39.3 bits (91), Expect = 5e-05
 Identities = 9/93 (9%), Positives = 27/93 (29%), Gaps = 6/93 (6%)

Query: 1   MDKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP 60
           +   +    + +S            E       C   A        ++++T+ +    Q 
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCC--ARNELGRECTRLFTIDL---NQT 229

Query: 61  PKISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
           P+ +     +   G  + + C     +    ++
Sbjct: 230 PQTTLPQLFLK-VGEPLWIRCKAVHVNHGFGLT 261

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 38.9 bits (90), Expect = 6e-05
 Identities = 9/76 (11%), Positives = 20/76 (26%), Gaps = 8/76 (10%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
             +S+ +   D G + C            SQ   VT++        +   +    +    
Sbjct: 292 AFVSSVARN-DTGYYTCS------SSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEF 344

Query: 78  ELVCSTSGGSPDPQIS 93
                     P  + +
Sbjct: 345 CFSVRFK-AYPQIRCT 359

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 6   IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA-GSGQDLHSQVYTVTVLTPPQPPKIS 64
           I  Y+  +  + LI+ +     D G + C        G   H+    V   +  +P   +
Sbjct: 66  IGGYKVRNQHWSLIMESVVPS-DKGNYTCV--VENEYGSINHTYHLDVVERSRHRPILQA 122

Query: 65  PG-ANPVATEGRAIELVCSTSGGSPDPQIS 93
              AN     G  +E VC        P I 
Sbjct: 123 GLPANASTVVGGDVEFVCKVY-SDAQPHIQ 151

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 11  PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ---PPKISPGA 67
              G + LII++ + + D   ++ R  A   G  +     ++ V  P +   P  +    
Sbjct: 57  FKGGYHQLIIASVTDD-DATVYQVR--ATNQGGSVSGTA-SLEVEVPAKIHLPKTLEGMG 112

Query: 68  NPVATEGRAIELVCSTSGGSPDPQIS 93
              A  G  + +    S G PDP I+
Sbjct: 113 AVHALRGEVVSIKIPFS-GKPDPVIT 137

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 39.2 bits (91), Expect = 5e-05
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 6   IIDYRPDSGRYDLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKIS 64
           I   +    ++ L++ +     D G + C ++   GS     +    V   +P +P   +
Sbjct: 170 IGGIKLRHQQWSLVMESVVPS-DRGNYTCVVENKFGS--IRQTYTLDVLERSPHRPILQA 226

Query: 65  PG-ANPVATEGRAIELVCSTSGGSPDPQIS 93
              AN  A  G  +E  C        P I 
Sbjct: 227 GLPANQTAVLGSDVEFHCKVY-SDAQPHIQ 255

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 39.1 bits (90), Expect = 5e-05
 Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 9/86 (10%)

Query: 10  RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANP 69
                   L++ +     D G + C         +       V +   P+ P+     + 
Sbjct: 78  DTFHNDGSLLLQDVQKA-DEGIYTCE---IRLKNESMVMKKPVELWVLPEEPR-----DL 128

Query: 70  VATEGRAIELVCSTSGGSPDPQISVT 95
               G   ++ CS           V 
Sbjct: 129 RVRVGDTTQMRCSIQSTEEKRVTKVN 154

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 17/96 (17%)

Query: 11  PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ----------- 59
           P+    +LI +    + D G + CR     +     SQ   + V   P+           
Sbjct: 60  PNGNTSELIFNAVHVK-DAGFYVCR--VNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE 116

Query: 60  -PPKIS-PGANPVATEGRAIELVCSTSGGSPDPQIS 93
              +I     +     G  + L C    GSP P   
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQ 151

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 39.0 bits (90), Expect = 7e-05
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 15/92 (16%)

Query: 2   DKVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP 61
           D+ +      D G + LII N   E D+  + C  +     +++   V+ +T        
Sbjct: 53  DRADSRRSLWDQGNFPLIIKNLKIE-DSDTYIC--EVEDQKEEVQLLVFGLTA-----NS 104

Query: 62  KISPGANPVATEGRAIELVCSTSGGSPDPQIS 93
                      +G+++ L   +      P + 
Sbjct: 105 DTH------LLQGQSLTLTLESP-PGSSPSVQ 129

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 38.8 bits (90), Expect = 7e-05
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 2   DKVEIIDYRPDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL 55
           ++          G+Y      +L I     E     ++CR K   +G+   S      V+
Sbjct: 144 EEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 203

Query: 56  TPPQ----PPKISPGANPV-ATEGRAIELVCSTSGGSPDPQIS 93
           T P     P   +    P+       I L+C    G P P   
Sbjct: 204 TEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ-GFPAPSFR 245

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 38.7 bits (90), Expect = 8e-05
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 18  LIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRA 76
           L+ISN    +D G ++C    A G+   + S+  ++      +          + TEG  
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGT---VVSREASLRFGFLQEFSAEERDPVKI-TEGWG 118

Query: 77  IELVCSTSGGSPDPQIS 93
           +   CS     P     
Sbjct: 119 VMFTCSPPPHYPALSYR 135

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 38.2 bits (88), Expect = 9e-05
 Identities = 12/78 (15%), Positives = 18/78 (23%), Gaps = 3/78 (3%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
             I +       G   C  K              V V        +SP      + G  +
Sbjct: 66  FTIPSYMI-SYAGMVFCEAKINDESYQ-SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKL 123

Query: 78  ELVCSTSGGSPDPQISVT 95
            L C+      +  I   
Sbjct: 124 VLNCTAR-TELNVGIDFN 140

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 15/97 (15%)

Query: 11  PDSGRY------DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS 64
               R       DL  SN   +     + C  +   +        +T+ VLT     + +
Sbjct: 160 TQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERT 219

Query: 65  PG--------ANPVATEGRAIELVCSTSGGSPDPQIS 93
           P         ++ +   G  + L C  S G P P I+
Sbjct: 220 PSFMYPQGTASSQMVLRGMDLLLECIAS-GVPTPDIA 255

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 12  DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVA 71
            +  +   +     E+D G++ C   A        S+  ++ +             +   
Sbjct: 65  GALFFYRTMQGKK-EQDGGEYWCV--AKNRVGQAVSRHASLQIAVLR-DDFRVEPKDTRV 120

Query: 72  TEGRAIELVCSTSGGSPDPQIS 93
            +G    L C    G P+P + 
Sbjct: 121 AKGETALLECGPPKGIPEPTLI 142

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 18  LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI 77
                A+   D+G++ C+     +     S    +TVL      +          EG  I
Sbjct: 53  SYRFKANNN-DSGEYTCQ--TGQTSL---SDPVHLTVLFEWLVLQTPH---LEFQEGETI 103

Query: 78  ELVCSTSGGSPDPQIS 93
            L C +    P  +++
Sbjct: 104 MLRCHSWKDKPLVKVT 119

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 36.0 bits (82), Expect = 6e-04
 Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 11/101 (10%)

Query: 2   DKVEIIDYRPDSGR-----YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT 56
           D  E I++R    R       L         D G + C L+       +   +  V    
Sbjct: 60  DLEEPINFRLPENRISKEKDVLWFRPTLLN-DTGNYTCMLRNTTYCSKVAFPL-EVVQKD 117

Query: 57  PPQPPKISPGANPVATEGRAIELVCST----SGGSPDPQIS 93
                 +    + +  E     + C         S  P I+
Sbjct: 118 SCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTIT 158

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 35.6 bits (82), Expect = 8e-04
 Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 13/82 (15%)

Query: 12  DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVA 71
           D     L I N S E D G +  R+      +       T+ V      P I        
Sbjct: 65  DKTNGALRIYNVSKE-DRGDYYMRM----LHETEDQWKITMEVYEMVSKPMIY------- 112

Query: 72  TEGRAIELVCSTSGGSPDPQIS 93
            E     L C    G  D ++ 
Sbjct: 113 WECSNATLTCEVLEG-TDVELK 133

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 35.3 bits (81), Expect = 8e-04
 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 13/77 (16%)

Query: 12  DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVA 71
           D+    L I N +   D  ++E             +  + + VL     P I        
Sbjct: 56  DTVSGSLTIYNLTSS-DEDEYEMESPNITD-----TMKFFLYVLEMVSKPMIY------- 102

Query: 72  TEGRAIELVCSTSGGSP 88
            E     L C    G+ 
Sbjct: 103 WECSNATLTCEVLEGTD 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.59
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.58
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.57
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.54
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.54
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.54
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.53
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.52
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.52
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.5
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.49
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.49
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.49
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.49
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.49
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.48
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.48
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.47
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.47
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.47
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.47
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.47
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.47
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.47
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.46
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.46
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.46
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.45
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.45
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.45
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.45
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.45
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.45
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.44
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.44
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.44
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.44
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.44
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.44
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.43
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.43
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.43
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.43
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.43
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.43
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.42
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.42
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.42
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.42
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.42
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.42
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.42
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.42
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.42
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.42
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.42
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.41
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.41
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.41
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.41
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.41
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.41
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.41
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.41
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.41
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.4
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.4
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.4
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.4
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.4
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.4
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.4
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.4
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.39
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.39
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.39
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.39
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.38
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.38
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.38
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.38
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.38
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.38
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.38
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.37
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.37
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.37
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.37
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.37
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.37
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.36
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.36
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.36
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.36
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.36
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.35
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.35
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.34
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.34
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.33
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.33
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.33
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.33
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.33
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.32
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.32
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.32
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.31
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.31
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.31
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.3
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.3
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.3
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.3
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.3
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.3
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.3
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.3
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.3
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.29
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.29
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.29
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.29
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.29
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.28
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.28
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.28
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.28
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.28
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.28
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.28
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.27
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.27
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.27
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.26
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.26
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.26
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.26
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.26
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.26
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.25
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.25
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.25
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.25
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.25
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.24
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.24
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.24
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.24
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.24
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.23
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.23
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.23
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.23
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.22
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.22
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.22
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.22
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.22
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.22
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.22
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.21
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.21
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.2
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.2
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.2
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.2
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.19
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.19
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.19
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.19
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.19
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.18
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.17
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.17
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.17
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.17
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.17
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.16
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.15
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.14
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.14
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.13
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.13
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.12
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.12
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.12
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.11
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.11
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.11
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.11
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.1
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.09
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.07
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.05
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.05
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.05
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.03
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.02
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.02
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.01
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.01
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.0
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.99
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.99
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.99
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.99
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.99
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.99
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.98
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.98
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.98
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.97
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.96
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.96
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	98.51
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.95
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.92
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.92
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.91
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.88
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.87
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.85
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.85
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.84
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.84
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	98.83
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	98.83
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.83
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	98.82
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.82
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	98.82
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.81
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.81
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.81
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.8
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	98.8
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.79
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.78
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	98.75
1oga_D	215	T-cell receptor alpha chain V region, beta-2-micro	98.74
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	98.73
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.73
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.72
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.71
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.7
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	98.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.7
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	98.69
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	98.68
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.68
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.68
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.67
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	98.67
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	98.65
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.65
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.64
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.63
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	98.62
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	98.62
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	98.62
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.6
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.6
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.6
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.59
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.59
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	98.58
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.58
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.58
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.58
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.58
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.57
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.55
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.54
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.54
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.53
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.53
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.53
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	98.53
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.53
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.52
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.52
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	98.52
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	98.49
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.49
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.49
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.49
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.48
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.48
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.47
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.47
3qjh_A	205	5C.C7 alpha chain; immunoglobulin domain, T cell r	98.47
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.47
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.46
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.46
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.45
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.45
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.44
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	98.44
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.43
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.43
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.43
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.43
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.42
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.42
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.41
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.41
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.41
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.4
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	98.39
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.39
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	98.38
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.37
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.36
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.36
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.35
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.35
1ymm_D	207	T cell receptor alpha chain; protein-protein compl	98.35
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.35
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.35
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.34
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.34
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.34
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.33
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.31
1u9k_A	114	Triggering receptor expressed on myeloid cells 1;	98.3
1he7_A	126	High affinity nerve growth factor receptor; transf	98.3
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.28
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.26
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.25
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.25
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	98.25
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.25
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.24
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	98.24
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.23
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.22
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.21
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.21
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.2
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.2
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.2
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.2
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.19
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.18
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.17
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.17
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.17
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.16
3khq_A	133	B-cell antigen receptor complex-associated protei	98.16
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.16
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.15
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	98.14
1mqk_H	127	Antibody 7E2 FV fragment, heavy chain; membrane pr	98.14
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.14
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.14
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.13
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.13
1jtp_A	148	Single-domain antibody; immunoglobulin, heavy chai	98.12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.12
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.12
1mfa_H	120	IGG1-lambda Se155-4 FAB (heavy chain); immunoglobu	98.12
1smo_A	119	Triggering receptor expressed on myeloid cells 1;	98.11
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.11
1xt5_A	135	Variable region-containing chitin-binding protein	98.11
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.1
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.09
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.09
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	98.08
1dlf_H	124	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.08
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.08
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.07
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.07
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.07
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.06
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.05
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.05
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.05
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.05
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.04
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.04
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	98.03
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.03
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.02
1kxv_C	121	Camelid VHH domain CAB10; beta 8 alpha 8, beta bar	98.02
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.01
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.0
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.0
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	97.99
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	97.99
2otu_A	115	FV light chain variable domain; antibody FV polygl	97.99
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	97.98
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	97.98
1yc7_A	124	Anti-VSG immunoglobulin heavy chain variable domai	97.97
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	97.97
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	97.97
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	97.96
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	97.96
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	97.96
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	97.96
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	97.95
3oai_A	507	Maltose-binding periplasmic protein, myelin prote;	97.95
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	97.95
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	97.95
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	97.95
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	97.95
3cx5_J	127	Heavy chain (VH) of FV-fragment; complex III, elec	97.94
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	97.94
1sjv_A	114	R9; camelids antibody, domain swapping, heavy chai	97.94
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.94
1q8m_A	127	Triggering receptor expressed on myeloid cells 1;	97.93
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	97.93
1zvh_A	134	Immunoglobulin heavy chain antibody variable domai	97.93
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	97.93
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	97.93
1xiw_D	122	Immunoglobulin heavy chain variable region; CD3-ep	97.93
2wzp_D	123	Camelid VHH5; baseplate, viral protein; 2.60A {Lam	97.93
3b9v_A	120	Heavy chain variable domain; antibody engineering,	97.93
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	97.92
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	97.92
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	97.92
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	97.92
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	97.91
2d7t_H	139	Anti polyhydroxybutyrate antibody FV, heavy chain;	97.91
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	97.91
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	97.91
3osk_A	130	Cytotoxic T-lymphocyte protein 4; beta sandwich, h	97.9
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.89
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	97.88
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	97.88
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	97.88
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	97.88
1kxt_B	127	Immunoglobulin VHH fragment; alpha 8 beta 8, beta	97.88
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	97.88
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	97.88
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	97.87
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	97.87
1dqt_A	117	CTLA4, cytotoxic T lymphocyte associated antigen 4	97.87
2ens_A	96	Advanced glycosylation END product-specific recept	97.86
1i3u_A	127	Antibody VHH LAMA domain; VHH fragment, immune sys	97.86
3nn8_A	122	Engineered SCFV, heavy chain; beta barrel, antibod	97.86
1p4b_L	135	Antibody variable light chain; FV antibody, antige	97.85
2x1q_A	127	Gelsolin nanobody; contractIle protein; 1.06A {Lam	97.85
2p45_B	123	Antibody CAB-RN05; seMet phasing, camelid single-d	97.85
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	97.85
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	97.84
3k1k_C	123	Enhancer; nanobody, antibody-complex, chromophore,	97.83
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	97.82
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	97.81
3k74_B	115	Nanobody; immunoglobulin, antibiotic resista metho	97.81
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	97.81
3lh2_H	137	FV 4E10 heavy chain; epitope-scaffold, immune syst	97.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.8
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	97.79
2oi9_C	121	V beta, T cell receptor beta chain; TCR, MHC, immu	97.79
1rjc_A	137	1D2L19, camelid heavy chain antibody; beta sandwic	97.78
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	97.78
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	97.77
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.77
2vyr_E	153	Human single domain antibody; zinc, complex, nucle	97.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.77
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	97.76
3iy0_H	120	FAB 14, heavy domain; cryoem, neutralizing antibod	97.75
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	96.94
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	97.74
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	97.74
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	97.73
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	97.73
1zvy_A	136	Immunoglobulin heavy chain antibody variable DOMA;	97.72
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	97.72
3tpk_A	136	Immunoglobulin heavy chain antibody variable DOMA;	97.71
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	97.71
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	97.71
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	97.7
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	97.7
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	97.7
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.69
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	97.69
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	97.68
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	97.68
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	97.66
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	97.66
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	97.65
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	97.65
3ux9_B	256	SCFV antibody; five helices, long loop connecting	97.65
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	97.65
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	97.64
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	97.64
3k81_A	127	Single strand antibody VHH domain; krepa6, single	97.63
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	97.63

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.59  E-value=2.4e-15  Score=90.91  Aligned_cols=82  Identities=15%  Similarity=0.390  Sum_probs=63.2

Q ss_pred             EEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCC
Q psy5866           8 DYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGS   87 (98)
Q Consensus         8 ~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~   87 (98)
                      +.....+.++|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..||.. ... .....+.+|+.+.|.|.+. |.
T Consensus        61 ~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~p~~~-~~~-~~~~~v~~g~~~~l~C~~~-G~  133 (203)
T 4fa8_A           61 DIHRSANTFFLVVTAANIS-HDGNYLCRMKLG---ETEVTKQEHLSVVKPLTL-SVH-SERSQFPDFSVLTVTCTVN-AF  133 (203)
T ss_dssp             EEEEETTEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEEEEEE-EEE-EEECCSSCSCCEEEEEEEE-EE
T ss_pred             EEEEcCCEEEEEEccCCHH-HCeEEEEEEEcC---CCcEEEEEEEEecCCcee-eec-ceeEEEcCCCEEEEEEEcC-CC
Confidence            3444567889999999999 999999999984   566666778888644322 112 2346788999999999995 79


Q ss_pred             CCCeEEEEe
Q psy5866          88 PDPQISVTL   96 (98)
Q Consensus        88 p~~~~~W~~   96 (98)
                      |.|.+.|++
T Consensus       134 P~P~v~W~~  142 (203)
T 4fa8_A          134 PHPHVQWLM  142 (203)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEEEEEE
Confidence            999999975

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.57  E-value=2.9e-14  Score=85.00  Aligned_cols=78  Identities=23%  Similarity=0.405  Sum_probs=64.7

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      .+..+|+|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..+|..+.+..  ...+.+|+.+.|.|.+..+.|.+.+
T Consensus        81 ~~~~~L~i~~v~~~-D~G~Y~C~~~~~---~~~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~v~l~C~~~~g~p~~~v  154 (214)
T 3jz7_A           81 SGDASINVTNLQLS-DIGTYQCKVKKA---PGVANKKFLLTVLVKPSGTRCFV--DGSEEIGNDFKLKCEPKEGSLPLQF  154 (214)
T ss_dssp             GTBCCEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECCCBSCEEEE--ESCCBTTCCEEEEEECSBCCSSCEE
T ss_pred             CCcccEEEccCChh-hCeEEEEEEEeC---CCccccEEEEEEEcCCCCceeee--ecceecCCcEEEEecCCCCCCCCEE
Confidence            35678999999999 999999999985   45567778899988887766532  2347889999999998668999999


Q ss_pred             EEEe
Q psy5866          93 SVTL   96 (98)
Q Consensus        93 ~W~~   96 (98)
                      .|++
T Consensus       155 ~W~~  158 (214)
T 3jz7_A          155 EWQK  158 (214)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.54  E-value=2.6e-14  Score=85.27  Aligned_cols=78  Identities=17%  Similarity=0.320  Sum_probs=57.5

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCC-cEEEEEEcCCCCCCCeEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGR-AIELVCSTSGGSPDPQIS   93 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~-~~~l~C~~~~~~p~~~~~   93 (98)
                      +.+|+|.+++.+ |+|.|+|.+.+..   ......+.|.|+.++..|.+.... .....|. .+.|.|.+.++.|.|.+.
T Consensus        69 ~~sL~I~~v~~~-D~G~Y~C~~~~~~---~~~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~~~g~~p~p~i~  143 (193)
T 2if7_A           69 SYSLQLSNLKME-DTGSYRAQISTKT---SAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCSVEDADDNVSFR  143 (193)
T ss_dssp             TCCEEECSCCGG-GCEEEEEEEECSS---CEEEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEEEESCCTTCEEE
T ss_pred             CeEEEECCCCcc-cCceEEEEEEecC---CCeEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEEEecCCCceEEE
Confidence            467999999999 9999999999852   233446788888777667664322 2234455 799999997556789999


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |+++
T Consensus       144 W~~~  147 (193)
T 2if7_A          144 WEAL  147 (193)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            9975

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.54  E-value=8.6e-14  Score=83.68  Aligned_cols=78  Identities=18%  Similarity=0.283  Sum_probs=63.2

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC--Ce
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD--PQ   91 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~--~~   91 (98)
                      +...|+|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..+|..+.+...  ..+.+|+.+.|+|.+.++.|.  ++
T Consensus        52 ~~~~L~I~~v~~~-D~G~Y~C~a~n~---~~~~~~~~~l~V~~~p~~~~~~~~--~~~~~G~~~~L~C~~~~~~p~~~~~  125 (202)
T 1vca_A           52 TTSTLTMNPVSFG-NEHSYLCTATCE---SRKLEKGIQVEIYSFPKDPEIHLS--GPLEAGKPITVKCSVADVYPFDRLE  125 (202)
T ss_dssp             TEEEEEESSCCGG-GCSEEEEEEEET---TEEEEEEEEEEEEBCCSCCEEEES--SCEETTSCEEEEEEEEEEBSGGGEE
T ss_pred             CccEEEECcCCHH-HCEEEEEEEEEC---CceEeeEEEEEEEeCCCCCEeCCc--eEEcCCCCEEEEEEECCcCCCCCeE
Confidence            4567999999999 999999999985   345566788999888877777542  678899999999999755554  47


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       126 i~W~k~  131 (202)
T 1vca_A          126 IDLLKG  131 (202)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            899975

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.54  E-value=6e-14  Score=83.54  Aligned_cols=80  Identities=25%  Similarity=0.356  Sum_probs=60.2

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCee--eEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDL--HSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~--~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      ++.+|+|.+++.+ |+|.|+|.+.+..+....  ....+.|.|..++..|.+..   .....|+.+.|.|.+..|.|.|.
T Consensus        63 ~~~~L~I~~v~~~-D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~---~~~~~g~~~~l~C~~~~g~P~p~  138 (201)
T 1dr9_A           63 NNLSIVILALRPS-DEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISD---FEIPTSNIRRIICSTSGGFPEPH  138 (201)
T ss_dssp             TTTEEEECSCCGG-GCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEE---EECSSTTEEEEEEEEEEESSCEE
T ss_pred             CCcEEEEecccch-hCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEe---ccCCCCCeEEEEEecCCccCCCE
Confidence            4568999999999 999999999996432222  24567888877666666532   12245888999999866899999


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       139 i~W~k~  144 (201)
T 1dr9_A          139 LSWLEN  144 (201)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            999975

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.53  E-value=4.2e-14  Score=84.74  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=61.2

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCe-eeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCC---CC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQD-LHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGG---SP   88 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~---~p   88 (98)
                      .++++|+|.+++.+ |+|.|+|.+.+...... .....+.|.|..++..|.+.. + ..+.+|+.+.|.|.+.+.   .|
T Consensus        79 ~~~~sL~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~-~~~~~G~~v~L~C~~~~~~~~~p  155 (214)
T 2zg1_A           79 KKNCSLSIGDARME-DTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-L-EPLESGRPTRLSCSLPGSCEAGP  155 (214)
T ss_dssp             GTBCCEEECSCCGG-GCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC----CCCCTTCCEEEEEECTTCCSCSS
T ss_pred             CCeEEEEEccCCHh-hCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-C-ccccCCCeEEEEEEeccCCCCCC
Confidence            45678999999999 99999999998521111 112467888888777787743 2 246799999999998643   47


Q ss_pred             CCeEEEEec
Q psy5866          89 DPQISVTLQ   97 (98)
Q Consensus        89 ~~~~~W~~~   97 (98)
                      .|.+.|+++
T Consensus       156 ~p~v~W~~~  164 (214)
T 2zg1_A          156 PLTFSWTGN  164 (214)
T ss_dssp             CCEEEEESS
T ss_pred             CceEEEeCC
Confidence            899999975

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.52  E-value=6.4e-14  Score=83.98  Aligned_cols=91  Identities=19%  Similarity=0.217  Sum_probs=64.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC-CCCEEe-CCCCceecCCCcEEEEEEc
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP-QPPKIS-PGANPVATEGRAIELVCST   83 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~-~~p~i~-~~~~~~~~~g~~~~l~C~~   83 (98)
                      |+......+.++|+|.+++.+ |+|.|+|.+.+..+........+.|.|...+ .+|.+. ......+.+|+.+.|.|.+
T Consensus        60 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~  138 (213)
T 3mj8_L           60 HFSGSNSGNMATLTISKAQAG-DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMI  138 (213)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEE
T ss_pred             cEEEEecCCEEEEEECCCChh-hCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEe
Confidence            444434567788999999999 9999999999863311345556788887443 455552 1234456689999999999


Q ss_pred             CCCCCC-CeEEEEec
Q psy5866          84 SGGSPD-PQISVTLQ   97 (98)
Q Consensus        84 ~~~~p~-~~~~W~~~   97 (98)
                      .+..|+ +.+.|+++
T Consensus       139 ~g~~p~~~~v~W~k~  153 (213)
T 3mj8_L          139 NGFYPADVAVTWEAD  153 (213)
T ss_dssp             EEEBSSCCEEEEEET
T ss_pred             eceeCCCeEEEEEcC
Confidence            754454 49999975

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.52  E-value=1.7e-13  Score=82.46  Aligned_cols=78  Identities=22%  Similarity=0.298  Sum_probs=61.5

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      ..+..+|+|.+++.+ |+|.|+|.+.+    .......+.|.|..++..+.+..  ...+.+|+.+.|.|.+. |.|.|.
T Consensus        76 ~~~~~~L~I~~v~~~-D~G~Y~C~~~~----~~~~~~~~~l~V~~~~~~~~~~~--~~~~~~g~~v~L~C~~~-g~P~p~  147 (222)
T 3sbw_C           76 SLGNAALQITDVKLQ-DAGVYRCMISY----GGADYKRITVKVNAPYNKINQRI--LVVDPVTSEHELTCQAE-GYPKAE  147 (222)
T ss_dssp             TTTEEEEEESSCCGG-GCEEEEEEEES----SSEEEEEEEEEEEBCCCCCEEEE--EEEETTTTEEEEEEEEE-EBSCCE
T ss_pred             cCCEEEEEEcCcccc-cCeEEEEEEEe----CCCceeEEEEEEECCCCCCCcee--eeeecCCCcEEEEEEec-CCCCCe
Confidence            345779999999999 99999999987    23445567888887776665431  12667899999999995 699999


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       148 i~W~~~  153 (222)
T 3sbw_C          148 VIWTSS  153 (222)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999975

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.50  E-value=7.2e-13  Score=78.86  Aligned_cols=78  Identities=31%  Similarity=0.495  Sum_probs=63.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      .+|.|.+++.. |+|.|+|.+.+..+ ....+..+.|.|..+|..+.+..  ...+.+|+.+.|.|.+..+.|.|.+.|+
T Consensus        65 ~~L~i~~v~~~-D~G~Y~C~~~~~~g-~~~~~~~~~l~V~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~p~~~i~W~  140 (212)
T 1f97_A           65 SGITFSSVTRK-DNGEYTCMVSEEGG-QNYGEVSIHLTVLVPPSKPTISV--PSSVTIGNRAVLTCSEHDGSPPSEYSWF  140 (212)
T ss_dssp             TEEEESCCCGG-GCEEEEEEEEETTS-SSEEEEEEEEEEEBCCCCCEEEC--CSEEETTSCEEEEEECSCCBSCCEEEEE
T ss_pred             eeEEEcccCcc-cCeEEEEEEEccCC-CcccEEEEEEEEEcCCCCcccCC--ccccCCCCeEEEEEEcccCcCCCEEEEE
Confidence            46999999999 99999999998633 33556678888988888776643  3578899999999995568999999999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       141 ~~  142 (212)
T 1f97_A          141 KD  142 (212)
T ss_dssp             ET
T ss_pred             eC
Confidence            75

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.49  E-value=2.7e-13  Score=79.93  Aligned_cols=82  Identities=16%  Similarity=0.301  Sum_probs=64.0

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE-eCCCCceecCCCcEEEEEEcCCCCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI-SPGANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i-~~~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      ...+..+|.|.+++.. |+|.|+|.+.+.   .......+.|.|...+.+|.+ .......+.+|+.+.|.|.+. +.|.
T Consensus        58 ~~~~~~~L~i~~~~~~-d~G~Y~C~~~n~---~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~  132 (194)
T 2a38_A           58 FSDGRAKLTIPAVTKA-NSGRYSLKATNG---SGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVT-GIPT  132 (194)
T ss_dssp             EETTEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEE-EESC
T ss_pred             eCCCEEEEEECCCCcc-cCEEEEEEEEcC---CceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEE-EecC
Confidence            3456778999999999 999999999885   445555677888765555554 222456788999999999984 7899


Q ss_pred             CeEEEEec
Q psy5866          90 PQISVTLQ   97 (98)
Q Consensus        90 ~~~~W~~~   97 (98)
                      +.+.|+++
T Consensus       133 ~~v~W~~~  140 (194)
T 2a38_A          133 PVVKFYRD  140 (194)
T ss_dssp             CEEEEEET
T ss_pred             CeEEEEEC
Confidence            99999975

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.49  E-value=1.6e-13  Score=81.74  Aligned_cols=76  Identities=17%  Similarity=0.245  Sum_probs=61.5

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS   93 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~   93 (98)
                      +..+|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..++..|.+..   ....+|+.+.|.|.+ .|.|.|.+.
T Consensus        65 ~~~~L~I~~v~~~-D~G~Y~C~~~~~---~~~~~~~~~l~V~~~~~~p~~~~---~~~~~g~~v~l~C~~-~g~P~p~v~  136 (202)
T 3bp6_B           65 GKALFHIPSVQVR-DSGQYRCLVICG---AAWDYKYLTVKVKASYMRIDTRI---LEVPGTGEVQLTCQA-RGYPLAEVS  136 (202)
T ss_dssp             TEEEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEBCCCCEEEEE---EECTTTCCEEEEEEE-EEBSCCEEE
T ss_pred             CeeEEEECCCCHH-HCcEEEEEEEeC---CCcceEEEEEEecCCCCcccEEE---EecCCCCeEEEEEEc-cccCCceEE
Confidence            6689999999999 999999999985   44456778888887776666531   245689999999999 479999999


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |+++
T Consensus       137 W~~~  140 (202)
T 3bp6_B          137 WQNV  140 (202)
T ss_dssp             ETTC
T ss_pred             EEeC
Confidence            9753

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.49  E-value=1.4e-13  Score=82.92  Aligned_cols=84  Identities=21%  Similarity=0.280  Sum_probs=59.8

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCC-eeeEeeEEEEEECC-CCCCEEe-CCCCceecCCCcEEEEEEcCCCCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQ-DLHSQVYTVTVLTP-PQPPKIS-PGANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~-~~~~~~~~l~v~~~-~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      .+.++|+|.+++.+ |+|.|+|.+.+..... ........|.|... +.+|.+. ..+...+.+|+.+.|.|.+.++.|.
T Consensus        76 ~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  154 (219)
T 1c1e_H           76 ATTAYLQINNLKNE-DMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE  154 (219)
T ss_dssp             GTEEEEEECSCCGG-GCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSS
T ss_pred             CCEEEEEECCCCcc-cCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCC
Confidence            45789999999999 9999999999853101 12233467777653 3445542 1233456789999999999754888


Q ss_pred             C-eEEEEec
Q psy5866          90 P-QISVTLQ   97 (98)
Q Consensus        90 ~-~~~W~~~   97 (98)
                      | .+.|+++
T Consensus       155 p~~v~W~~~  163 (219)
T 1c1e_H          155 PVTVTWNSG  163 (219)
T ss_dssp             CCEEEEGGG
T ss_pred             CeEEEEEeC
Confidence            8 9999864

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.49  E-value=4.2e-13  Score=80.99  Aligned_cols=78  Identities=21%  Similarity=0.428  Sum_probs=62.6

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcE-EEEEEcCCCCCCCeEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAI-ELVCSTSGGSPDPQISV   94 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~-~l~C~~~~~~p~~~~~W   94 (98)
                      .|.|.+++.+ |+|.|+|.+.+..  ....+..+.|.|..+|..|.+.. .....+.+|+.+ .|.|.+..+.|.|.+.|
T Consensus        78 ~L~i~~v~~~-D~G~Y~C~~~~~~--~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W  154 (231)
T 2pet_A           78 RLVLAEAQVG-DERDYVCVVRAGA--AGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITW  154 (231)
T ss_dssp             CEEESSCCGG-GCEEEEEEEECGG--GCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEE
T ss_pred             eEEEcccCcc-cCceEEEEEEecC--CCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEE
Confidence            3999999999 9999999999852  14556678899988888787743 233557789887 99999856889999999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       155 ~~~  157 (231)
T 2pet_A          155 YRN  157 (231)
T ss_dssp             EET
T ss_pred             EEC
Confidence            975

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.49  E-value=2.5e-13  Score=83.65  Aligned_cols=90  Identities=17%  Similarity=0.233  Sum_probs=61.9

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC------------------CCEEeCCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ------------------PPKISPGA   67 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~------------------~p~i~~~~   67 (98)
                      |+......+.++|+|.+++.+ |+|.|+|.+.+.............|.|..++.                  .+.+....
T Consensus        64 r~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (256)
T 3ux9_B           64 RFSGSKSGTSASLAITGLQSE-DEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESG  142 (256)
T ss_dssp             TEEEEEETTEEEEEECSCCGG-GCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEEC
T ss_pred             cEEEEccCCEEEEEECCCChh-hCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCC
Confidence            444444456789999999999 99999999998533223444456777765442                  22343234


Q ss_pred             CceecCCCcEEEEEEcCCCCC--CCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSP--DPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~   97 (98)
                      ...+.+|+++.|.|.+. +.+  .+.+.|+++
T Consensus       143 ~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~  173 (256)
T 3ux9_B          143 GGLVQPGGSLRLSCAAS-GFTFSSYAMSWVRQ  173 (256)
T ss_dssp             CEEECTTCCEEEEEEEE-SSCGGGSEEEEEEE
T ss_pred             CeEEcCCCeEEEEEEEe-CCcccccEEEEEEE
Confidence            56789999999999986 444  689999986

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.48  E-value=1.8e-13  Score=82.61  Aligned_cols=85  Identities=25%  Similarity=0.350  Sum_probs=59.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC-CCCCCEEeC-CCCceecCCCcEEEEEEcCCCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKISP-GANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~-~~~~p~i~~-~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+.............|.|.. ++.+|.+.. .+...+.+|+.+.|.|.+.+..|.
T Consensus        77 ~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  155 (220)
T 1pz5_B           77 SKSSVYLQMNNLRAE-DTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPE  155 (220)
T ss_dssp             GGTEEEEEECSCCGG-GCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSS
T ss_pred             CCCeEEEEEccCCHH-HCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCC
Confidence            456789999999999 99999999998521111222346777763 334555421 123356789999999999755588


Q ss_pred             C-eEEEEec
Q psy5866          90 P-QISVTLQ   97 (98)
Q Consensus        90 ~-~~~W~~~   97 (98)
                      | .+.|+++
T Consensus       156 p~~v~W~~~  164 (220)
T 1pz5_B          156 PVTVKWNYG  164 (220)
T ss_dssp             CCEEEEGGG
T ss_pred             CeEEEEecC
Confidence            8 9999864

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.48  E-value=1.1e-12  Score=80.30  Aligned_cols=84  Identities=19%  Similarity=0.162  Sum_probs=59.8

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC------------CCCEE-eCCCCceecCCCcE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP------------QPPKI-SPGANPVATEGRAI   77 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~------------~~p~i-~~~~~~~~~~g~~~   77 (98)
                      ...+.++|+|.+++.+ |+|.|+|.+.+.. ..........|.|..++            .++.+ .......+.+|+.+
T Consensus        76 ~~~~~~~L~I~~v~~~-D~G~Y~C~~~n~~-~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v  153 (247)
T 2ghw_B           76 NSKNTLYLQMNSLRAE-DTAVYYCARDRSY-YLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERA  153 (247)
T ss_dssp             TTTTEEEEEECSCCGG-GCEEEEEEEEETT-EEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCE
T ss_pred             CCCCEEEEEECcCCHH-HCEEEEEeeeccC-CccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcE
Confidence            3566789999999999 9999999999841 01122334577776542            23333 22234578999999


Q ss_pred             EEEEEcCCCCCCCeEEEEec
Q psy5866          78 ELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        78 ~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .|.|.+. +.|.+.+.|+++
T Consensus       154 ~L~C~~~-~~~~~~v~W~k~  172 (247)
T 2ghw_B          154 TLSCRAS-QSVRSNLAWYQQ  172 (247)
T ss_dssp             EEEEEES-SCCTTCEEEEEE
T ss_pred             EEEEEeC-CCccceEEEEEE
Confidence            9999986 677789999983

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.47  E-value=5.1e-13  Score=81.37  Aligned_cols=77  Identities=21%  Similarity=0.310  Sum_probs=62.3

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC---
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD---   89 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~---   89 (98)
                      .+...|.|.+++++ |+|.|+|.+.+.   .......+.|+|+.+|..+.+.+   ....+|+.. |+|.+.++.|.   
T Consensus        56 ~~~~~L~I~~v~~~-d~G~Y~C~a~n~---~~~~~~~~~ltV~~~P~~~~i~~---~~~~~g~~~-l~C~a~g~~P~~~~  127 (210)
T 1gsm_A           56 TGRSVLTVRNASLS-AAGTRVCVGSCG---GRTFQHTVQLLVYAFPNQLTVSP---AALVPGDPE-VACTAHKVTPVDPN  127 (210)
T ss_dssp             SSEEEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEBCCSEEEEES---SSBCTTCCE-EEEEEEEEBCCCTT
T ss_pred             CCccEEEECccCcc-cCceEEEEEEeC---CCceEEEEEEEEEecCCCcEEcc---ceEEeCCce-EEEEeCCCCCCCCC
Confidence            45668999999999 999999999985   45566778999998888777653   267778888 99999866674   


Q ss_pred             -CeEEEEec
Q psy5866          90 -PQISVTLQ   97 (98)
Q Consensus        90 -~~~~W~~~   97 (98)
                       +++.|+++
T Consensus       128 ~lti~Wlk~  136 (210)
T 1gsm_A          128 ALSFSLLVG  136 (210)
T ss_dssp             TEEEEEEET
T ss_pred             CcEEEEEEC
Confidence             48999985

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.47  E-value=4.9e-13  Score=79.58  Aligned_cols=82  Identities=17%  Similarity=0.256  Sum_probs=53.7

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      ......|.|.+++.+ |+|.|+|.+.+..+ ....+..+.|.|...+.+|.+...+...+.+|+.+.|.|.+. +.| +.
T Consensus        54 ~~~~~~L~i~~v~~~-D~G~Y~C~a~n~~g-~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~-~~p-~~  129 (196)
T 2d3v_A           54 PKNKARFSIPSMTEH-HAGRYRCYYYSPAG-WSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSR-LRF-DR  129 (196)
T ss_dssp             STTEEEEEESSCCGG-GCEEEEEEEEETTE-ECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEES-SCC-SE
T ss_pred             CccccEEEeccCChh-HCeEEEEEEeCCCC-cCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcC-CCC-CE
Confidence            345678999999999 99999999987421 112245577888765556777543445788999999999986 566 89


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       130 ~~W~k~  135 (196)
T 2d3v_A          130 FILTEE  135 (196)
T ss_dssp             EEEEEC
T ss_pred             EEEEcc
Confidence            999975

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.47  E-value=2.8e-13  Score=80.27  Aligned_cols=71  Identities=24%  Similarity=0.220  Sum_probs=56.1

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS   93 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~   93 (98)
                      ++.+|+|.+++.+ |+|.|+|.+.+.   . .....+.|.|+.++..|.+..       .+..+.|+|.+..| |.|.+.
T Consensus        67 ~~~sL~I~~v~~~-D~G~Y~C~v~~~---~-~~~~~~~L~V~~~~~~P~i~~-------~~~~v~L~C~~~~g-p~p~i~  133 (180)
T 2dru_A           67 TNGALRIYNVSKE-DRGDYYMRMLHE---T-EDQWKITMEVYEMVSKPMIYW-------ECSNATLTCEVLEG-TDVELK  133 (180)
T ss_dssp             TTCCEEECSCCGG-GCEEEEEEEESS---S-EEEEEEEEEEECCCCCCEEEE-------EGGGTEEEEECSSC-TTCEEE
T ss_pred             CCccEEEcCCCHH-HCeEEEEEEEcC---C-eEEEEEEEEEECCCCCCEEEe-------cCCCEEEEEEeCCC-CCCEEE
Confidence            4557999999999 999999999874   2 556678899987777776632       23568999999656 899999


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |+++
T Consensus       134 W~~~  137 (180)
T 2dru_A          134 LYQG  137 (180)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9975

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.47  E-value=5.1e-13  Score=82.51  Aligned_cols=86  Identities=14%  Similarity=0.104  Sum_probs=59.8

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC--------------CCEE-eCCCCceecCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ--------------PPKI-SPGANPVATEGR   75 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~--------------~p~i-~~~~~~~~~~g~   75 (98)
                      ...+.++|+|.+++.+ |+|.|+|.+.+.............|.|..++.              .+.+ .......+.+|+
T Consensus        74 ~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~  152 (259)
T 3omz_A           74 STRKNLRMILRNLIEN-DSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRK  152 (259)
T ss_dssp             C--CCCEEEESSCCGG-GCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTC
T ss_pred             CCCCeEEEEECCCCcc-cCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCC
Confidence            4456678999999999 99999999987532122444456777775421              2334 223457889999


Q ss_pred             cEEEEEEcCCCCCCCeEEEEec
Q psy5866          76 AIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        76 ~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ++.|.|.+....|.+.+.|+++
T Consensus       153 ~v~L~C~~~~~~~~~~v~W~k~  174 (259)
T 3omz_A          153 AVTLNCLYETSWWSYYIFWYKR  174 (259)
T ss_dssp             CEEECCEEECCCSSCEEEEEEE
T ss_pred             CEEEEEECCCccCCceEEEeee
Confidence            9999998865457889999985

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.47  E-value=2.7e-13  Score=81.89  Aligned_cols=86  Identities=17%  Similarity=0.200  Sum_probs=59.4

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEEEEEEcCCCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIELVCSTSGGSP   88 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p   88 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+.............|.|.. ++.+|.+. ..+...+.+|+.+.|.|.+.+..|
T Consensus        73 ~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  151 (215)
T 1c5d_H           73 TSKSQVFLKMNSLQTE-DTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFP  151 (215)
T ss_dssp             TTTTEEEEEESSCCGG-GCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBS
T ss_pred             CCCceEEEEECCCCcc-cCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEc
Confidence            3456789999999999 99999999987421111222345777763 33445442 112334678999999999986558


Q ss_pred             CC-eEEEEec
Q psy5866          89 DP-QISVTLQ   97 (98)
Q Consensus        89 ~~-~~~W~~~   97 (98)
                      .| .+.|+++
T Consensus       152 ~p~~v~W~~~  161 (215)
T 1c5d_H          152 EPVTVTWNSG  161 (215)
T ss_dssp             SCCEEEEGGG
T ss_pred             CCcEEEEccC
Confidence            77 9999864

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.47  E-value=2.8e-14  Score=85.98  Aligned_cols=78  Identities=21%  Similarity=0.416  Sum_probs=58.7

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS   93 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~   93 (98)
                      ++.+|.|.+++.+ |+|.|+|.+.+.    ...+..+.|.|..++..|.+.......+.+|+.+.|.|.+..+.|.+.+.
T Consensus        70 ~~~sL~I~~v~~~-D~G~Y~C~~~~~----~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~  144 (222)
T 4i0k_A           70 GNASLRLQRVRVT-DEGSYTCFVSIQ----DFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVF  144 (222)
T ss_dssp             TBCCEEECSCCGG-GCSCEEEEEEEC----CCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEE
T ss_pred             CeEEEEECCcccc-cCEEEEEEEEeC----CCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEE
Confidence            4678999999999 999999999984    23344556777666677777544455778899999999986688999999


Q ss_pred             EEe
Q psy5866          94 VTL   96 (98)
Q Consensus        94 W~~   96 (98)
                      |++
T Consensus       145 W~~  147 (222)
T 4i0k_A          145 WKD  147 (222)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            987

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.47  E-value=6.6e-13  Score=80.62  Aligned_cols=85  Identities=18%  Similarity=0.193  Sum_probs=59.7

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCC---CCeeeEeeEEEEEEC-CCCCCEEeC-CCCceecCCCcEEEEEEcCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGS---GQDLHSQVYTVTVLT-PPQPPKISP-GANPVATEGRAIELVCSTSG   85 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~---~~~~~~~~~~l~v~~-~~~~p~i~~-~~~~~~~~g~~~~l~C~~~~   85 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+..+   ..........|.|.. ++.+|.+.. .+...+.+|+.+.|.|.+.+
T Consensus        74 ~~~~~~sL~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g  152 (223)
T 1dee_B           74 NSKNTLYLQMNSLRAE-DTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQD  152 (223)
T ss_dssp             TTTTEEEEEECSCCGG-GCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEE
T ss_pred             CCCCEEEEEECCCCHH-HCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEE
Confidence            3456889999999999 99999999987421   011222345788863 345555521 12334678999999999986


Q ss_pred             CCCCC-eEEEEe
Q psy5866          86 GSPDP-QISVTL   96 (98)
Q Consensus        86 ~~p~~-~~~W~~   96 (98)
                      ..|.+ .+.|++
T Consensus       153 ~~P~p~~v~W~~  164 (223)
T 1dee_B          153 FLPDSITFSWKY  164 (223)
T ss_dssp             EBSSCCEEEEEE
T ss_pred             EeCCCeEEEeEc
Confidence            66776 999998

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.46  E-value=2.4e-13  Score=81.78  Aligned_cols=90  Identities=9%  Similarity=0.093  Sum_probs=61.5

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEEEEcC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELVCSTS   84 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~C~~~   84 (98)
                      |+......+.++|+|.+++.+ |+|.|+|.+.+... .........|.|...+.+|.+.. .+.....+|+.+.|.|.+.
T Consensus        62 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~-~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~  139 (216)
T 2xzc_L           62 RFSGSKSGTSATLGITGLQTG-DEADYYCGTWDSSL-NPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLN  139 (216)
T ss_dssp             TEEEEEETTEEEEEECSCCGG-GCEEEEEEEECTTS-CEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEE
T ss_pred             ceEEeccCCEEEEEECCCCcc-cCEEEEEEEEeCCC-cceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEE
Confidence            444444456779999999999 99999999998532 12233345677765545565521 1223344688999999997


Q ss_pred             CCCCCC-eEEEEec
Q psy5866          85 GGSPDP-QISVTLQ   97 (98)
Q Consensus        85 ~~~p~~-~~~W~~~   97 (98)
                      ++.|.+ .+.|+++
T Consensus       140 g~~P~~~~v~W~k~  153 (216)
T 2xzc_L          140 NFYPREAKVQWKVD  153 (216)
T ss_dssp             EEBSSCCEEEEEET
T ss_pred             eEcCCceEEEEEEC
Confidence            556665 8999985

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.46  E-value=3.5e-13  Score=81.68  Aligned_cols=85  Identities=19%  Similarity=0.148  Sum_probs=59.6

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC-CCCCEEeCCCCceecCCCcEEEEEEcCCCCCC-
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP-PQPPKISPGANPVATEGRAIELVCSTSGGSPD-   89 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~-~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~-   89 (98)
                      ..+.++|+|.+++.+ |+|.|.|.+.+.............|.|... +.+|.+.......+.+|+.+.|.|.+.+..|. 
T Consensus        75 ~~~~~~L~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~  153 (220)
T 2fbj_H           75 AKNSLYLQMSKVRSE-DTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSG  153 (220)
T ss_dssp             SSCEEEEEECSCCGG-GCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCC
T ss_pred             CCCEEEEEECCCChh-hCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCC
Confidence            456789999999999 999999999985210002233457888643 24455532123456789999999999865576 


Q ss_pred             -CeEEEEec
Q psy5866          90 -PQISVTLQ   97 (98)
Q Consensus        90 -~~~~W~~~   97 (98)
                       +.+.|+++
T Consensus       154 ~~~v~W~~~  162 (220)
T 2fbj_H          154 TMNVTWGKS  162 (220)
T ss_dssp             CEEEEESCC
T ss_pred             cEEEEEecC
Confidence             79999864

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.46  E-value=1.2e-13  Score=83.79  Aligned_cols=89  Identities=13%  Similarity=0.167  Sum_probs=63.3

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEEEEcC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELVCSTS   84 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~C~~~   84 (98)
                      ++......+.++|+|.+++.+ |+|.|+|.+.+...  ........+.|...+.+|.+.. .......+|+.+.|.|.+.
T Consensus        84 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~--~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~  160 (237)
T 3sob_L           84 RFSGSGSGTDFTLTISSLQPE-DFATYYCQQSYTTP--PTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLN  160 (237)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSSS--CEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEE
T ss_pred             cEEEEcCCCEEEEEECCCChh-hCeEEEEeeccCCc--eEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEc
Confidence            444444457889999999999 99999999987421  2233445677766666666621 2334455688899999997


Q ss_pred             CCCC-CCeEEEEec
Q psy5866          85 GGSP-DPQISVTLQ   97 (98)
Q Consensus        85 ~~~p-~~~~~W~~~   97 (98)
                      ++.| .+.+.|+++
T Consensus       161 ~~~p~~~~v~W~k~  174 (237)
T 3sob_L          161 NFYPREAKVQWKVD  174 (237)
T ss_dssp             EEBSSCCEEEEEET
T ss_pred             ccCCCceEEEEEEC
Confidence            6566 689999975

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.45  E-value=1.5e-12  Score=80.33  Aligned_cols=86  Identities=12%  Similarity=0.061  Sum_probs=60.9

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECC---------CCCeeeEeeEEEEEECCCC------------CC-EEeCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAG---------SGQDLHSQVYTVTVLTPPQ------------PP-KISPGA   67 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~---------~~~~~~~~~~~l~v~~~~~------------~p-~i~~~~   67 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+..         ...........|.|...+.            .+ .+....
T Consensus        79 ~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (256)
T 3juy_B           79 DTSANTAYMELRSLRSA-DTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPG  157 (256)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECS
T ss_pred             ecCCCEEEEEECCCCcc-cCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCC
Confidence            35677889999999999 9999999998740         0122333446677765432            22 333335


Q ss_pred             CceecCCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      ...+.+|+++.|.|.+.+ .|. +.+.|+++
T Consensus       158 ~~~v~~G~~v~L~C~~~~-~~~~~~v~W~k~  187 (256)
T 3juy_B          158 TLSLSPGERATFSCRSSH-SIRSRRVAWYQH  187 (256)
T ss_dssp             EEEECTTSCEEEEEEESS-CCTTCCEEEEEE
T ss_pred             eEEEeCCCCEEEEEEECC-CcCCeeEEEEEE
Confidence            578899999999999874 554 89999984

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.45  E-value=2.7e-13  Score=81.40  Aligned_cols=85  Identities=22%  Similarity=0.245  Sum_probs=60.3

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCC--CeeeEeeEEEEEECCC-CCCEEeC-CCCceecCCCcEEEEEEcCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSG--QDLHSQVYTVTVLTPP-QPPKISP-GANPVATEGRAIELVCSTSGGS   87 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~~~-~~p~i~~-~~~~~~~~g~~~~l~C~~~~~~   87 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+..+.  .........|.|...+ .+|.+.. ........|+.+.|.|.+.++.
T Consensus        71 ~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~  149 (218)
T 3s96_B           71 SGADRYLSISNIQPE-DEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFS  149 (218)
T ss_dssp             ETTEEEEEESSCCGG-GCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEB
T ss_pred             CCceEEEEEccCCcc-cCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECccc
Confidence            556788999999999 999999999884210  0133445678887544 4455521 2344556778899999997556


Q ss_pred             CCC-eEEEEec
Q psy5866          88 PDP-QISVTLQ   97 (98)
Q Consensus        88 p~~-~~~W~~~   97 (98)
                      |.+ .+.|+++
T Consensus       150 p~~~~v~W~k~  160 (218)
T 3s96_B          150 PSGVTVAWKAN  160 (218)
T ss_dssp             SSCCEEEEEET
T ss_pred             CCCeEEEEEEC
Confidence            777 8999975

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.45  E-value=6.2e-13  Score=80.79  Aligned_cols=86  Identities=20%  Similarity=0.209  Sum_probs=59.4

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCC----C-eeeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEEEEEEc
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSG----Q-DLHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIELVCST   83 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~----~-~~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~l~C~~   83 (98)
                      ...+.++|+|.+++.+ |+|.|+|.+.+..+.    . ........|.|.. ++.+|.+. ..+...+.+|+.+.|.|.+
T Consensus        74 ~~~~~~sL~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~  152 (225)
T 1op3_H           74 DLEDFVYLQMHKMRVE-DTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLV  152 (225)
T ss_dssp             TTTTEEEEEECSCCGG-GCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEE
T ss_pred             CCCCEEEEEECCCChh-hCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEE
Confidence            3456789999999999 999999999975210    1 1222346788875 33445442 1122345789999999999


Q ss_pred             CCCCCCC-eEEEEec
Q psy5866          84 SGGSPDP-QISVTLQ   97 (98)
Q Consensus        84 ~~~~p~~-~~~W~~~   97 (98)
                      .+..|.+ .+.|+++
T Consensus       153 ~g~~P~p~~v~W~~~  167 (225)
T 1op3_H          153 KDYFPEPVTVSWNSG  167 (225)
T ss_dssp             EEEBSSCCEEECCTT
T ss_pred             EeEECCCeEEEEecC
Confidence            7555776 9999864

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.45  E-value=2.2e-13  Score=81.62  Aligned_cols=89  Identities=15%  Similarity=0.116  Sum_probs=62.0

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEe-CCCCceecCCCcEEEEEEcC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS-PGANPVATEGRAIELVCSTS   84 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~-~~~~~~~~~g~~~~l~C~~~   84 (98)
                      |+......+.++|+|.+++.+ |+|.|+|.+.+..  .........|.|.....+|.+. .........|..+.|.|.+.
T Consensus        61 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~--~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~  137 (213)
T 3r06_A           61 RFSGSGSGRDSSFTISSLESE-DIGSYYCQQYYNY--PWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVN  137 (213)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCSEEEEEECSSS--SCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEE
T ss_pred             cEEEeccCCEEEEEECCCCcc-cCEEEEEecccCC--ceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEe
Confidence            444444557789999999999 9999999998742  1233344567775555666652 12344566788899999997


Q ss_pred             CCCC-CCeEEEEec
Q psy5866          85 GGSP-DPQISVTLQ   97 (98)
Q Consensus        85 ~~~p-~~~~~W~~~   97 (98)
                      ++.| .+.+.|+++
T Consensus       138 g~~p~~~~v~W~k~  151 (213)
T 3r06_A          138 NFYPKDINVKWKVD  151 (213)
T ss_dssp             EEBSSCEEEEEEET
T ss_pred             eecCCceEEEEEEC
Confidence            5444 458999975

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.45  E-value=4.4e-13  Score=81.01  Aligned_cols=85  Identities=20%  Similarity=0.283  Sum_probs=58.7

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCe--eeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEEEEEEcCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQD--LHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIELVCSTSGGS   87 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~--~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~   87 (98)
                      ..+.++|+|.+++.+ |+|.|.|.+.+......  .......|.|.. ++..|.+. ......+.+|+.+.|.|.+.+..
T Consensus        77 ~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~  155 (222)
T 1q9r_B           77 SQSILYLQMNTLRAE-DSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYF  155 (222)
T ss_dssp             TTTEEEEEECSCCGG-GCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEB
T ss_pred             CCCeEEEEECcCCcc-cCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEE
Confidence            456789999999999 99999999987421000  222345677764 23445542 11233467899999999997556


Q ss_pred             CCC-eEEEEec
Q psy5866          88 PDP-QISVTLQ   97 (98)
Q Consensus        88 p~~-~~~W~~~   97 (98)
                      |.| .+.|+++
T Consensus       156 P~p~~v~W~~~  166 (222)
T 1q9r_B          156 PEPVTVTWNSG  166 (222)
T ss_dssp             SSCCEEEEGGG
T ss_pred             CCCCEEEEecC
Confidence            888 9999864

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.44  E-value=1.9e-13  Score=81.90  Aligned_cols=91  Identities=20%  Similarity=0.251  Sum_probs=61.4

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC-CCCEEeC-CCCceecCCCcEEEEEEc
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP-QPPKISP-GANPVATEGRAIELVCST   83 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~-~~p~i~~-~~~~~~~~g~~~~l~C~~   83 (98)
                      |+......+.++|+|.+++.+ |+|.|+|.+.+.............|.|...+ .+|.+.. .......+|+.+.|.|.+
T Consensus        59 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~  137 (212)
T 1nfd_E           59 RFSGSTSGTTATLTISGAQPE-DEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLV  137 (212)
T ss_dssp             TEEEEEETTEEEEEETTCCGG-GCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEE
T ss_pred             cEEEEeeCCEEEEEECcCCcc-cCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEE
Confidence            344444456789999999999 9999999999731212222334567775433 4555532 233445679999999999


Q ss_pred             CCCCCC-CeEEEEec
Q psy5866          84 SGGSPD-PQISVTLQ   97 (98)
Q Consensus        84 ~~~~p~-~~~~W~~~   97 (98)
                      .+..|+ +.+.|+++
T Consensus       138 ~g~~p~~~~v~W~k~  152 (212)
T 1nfd_E          138 NDFYPGSATVTWKAN  152 (212)
T ss_dssp             EEEBSSCCEEEEEET
T ss_pred             EeeECCccEEEEEEC
Confidence            755465 89999975

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.44  E-value=2.4e-12  Score=79.37  Aligned_cols=85  Identities=21%  Similarity=0.206  Sum_probs=58.9

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCC-CeeeEeeEEEEEECCC-----------CCCEE-eCCCCceecCCCcE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSG-QDLHSQVYTVTVLTPP-----------QPPKI-SPGANPVATEGRAI   77 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~-~~~~~~~~~l~v~~~~-----------~~p~i-~~~~~~~~~~g~~~   77 (98)
                      ...+.++|+|.+++.+ |+|.|+|.+.+.... .........|.|..++           ..+.+ .......+.+|+++
T Consensus        81 ~~~~~~~L~I~~v~~~-DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v  159 (257)
T 3gkz_A           81 TSKNQVYLQLKSVSSE-DTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKV  159 (257)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCE
T ss_pred             cCCceEEEEECCCChh-hCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcE
Confidence            4456789999999999 999999999884211 1223344677776541           12334 22234678999999


Q ss_pred             EEEEEcCCCCCCC-eEEEEec
Q psy5866          78 ELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        78 ~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      .|.|.+. +.|.+ .+.|+++
T Consensus       160 ~L~C~~~-~~~~~~~v~W~k~  179 (257)
T 3gkz_A          160 TLTCSAS-SSVSSSHLYWYQQ  179 (257)
T ss_dssp             EEEEEES-SCCCGGGEEEEEE
T ss_pred             EEEEEEc-cCccceEEEEEEE
Confidence            9999986 46666 8999985

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.44  E-value=2.4e-12  Score=80.67  Aligned_cols=84  Identities=24%  Similarity=0.206  Sum_probs=58.6

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCC--CeeeEeeEEEEEECCCC------------CCEE-eCCCCceecCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSG--QDLHSQVYTVTVLTPPQ------------PPKI-SPGANPVATEGR   75 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~~~~------------~p~i-~~~~~~~~~~g~   75 (98)
                      ...+.++|+|.+++.+ |+|.|+|.+.+..+.  .........|.|..++.            ++.+ .......+.+|+
T Consensus       100 ~~~~~~sL~I~~v~~~-DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~  178 (282)
T 1qok_A          100 TSSNTAYLQLSSLTSE-DTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGE  178 (282)
T ss_dssp             TTTTEEEEEECSCCGG-GCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTC
T ss_pred             cCCCeEEEEECcCChh-hCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCC
Confidence            3456789999999999 999999999985320  11222345778876541            2333 222345789999


Q ss_pred             cEEEEEEcCCCCCCCeEEEEec
Q psy5866          76 AIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        76 ~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ++.|.|.+. +.| +.+.|+++
T Consensus       179 ~v~L~C~~~-~~~-~~v~W~k~  198 (282)
T 1qok_A          179 KVTITCSAS-SSV-SYMHWFQQ  198 (282)
T ss_dssp             CEEEEEEES-SCC-SCCEEEEE
T ss_pred             cEEEEEEec-CCC-ceEEEEEE
Confidence            999999986 566 89999984

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.44  E-value=2.4e-13  Score=81.56  Aligned_cols=81  Identities=21%  Similarity=0.331  Sum_probs=57.8

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEEEEEEcCCCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+.   . .......|.|.. ++.+|.+. ..+...+.+|+.+.|.|.+.+..|.
T Consensus        74 ~~~~~~L~I~~v~~~-D~G~Y~C~~~~~---~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~  148 (210)
T 3d9a_H           74 SKNQYYLDLNSVTTE-DTATYYCANWDG---D-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPE  148 (210)
T ss_dssp             GGTEEEEEECSCCGG-GCEEEEEEETTS---S-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSS
T ss_pred             CCCEEEEEECCCCcc-cCEEEEEEEecC---c-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecC
Confidence            345789999999999 999999999873   1 222235677753 34455552 1123456789999999999755587


Q ss_pred             C-eEEEEec
Q psy5866          90 P-QISVTLQ   97 (98)
Q Consensus        90 ~-~~~W~~~   97 (98)
                      | .+.|+++
T Consensus       149 p~~v~W~~~  157 (210)
T 3d9a_H          149 PVTVTWNSG  157 (210)
T ss_dssp             CCEEEEGGG
T ss_pred             CcEEEEeeC
Confidence            7 9999864

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.44  E-value=7.8e-13  Score=81.75  Aligned_cols=84  Identities=19%  Similarity=0.195  Sum_probs=58.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCC------CCeeeEeeEEEEEECCCC------------CCEE-eCCCCceec
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGS------GQDLHSQVYTVTVLTPPQ------------PPKI-SPGANPVAT   72 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~------~~~~~~~~~~l~v~~~~~------------~p~i-~~~~~~~~~   72 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+..+      ..........|.|..++.            ++.+ .......+.
T Consensus        74 ~~~~~~L~I~~v~~~-DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~  152 (257)
T 1f3r_B           74 SKNQVFLKMNSLQTD-DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSAS  152 (257)
T ss_dssp             TTTEEEEEEESCCTT-CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCC
T ss_pred             CCCEEEEEECCCCcc-cCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEc
Confidence            467789999999999 99999999998521      011122345777765431            1222 112345688


Q ss_pred             CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +|+.+.|.|.+. +.|.+.+.|+++
T Consensus       153 ~G~~v~L~C~~~-~~~~~~v~W~k~  176 (257)
T 1f3r_B          153 VGDRVTLSCKGS-QNINNYLAWYQQ  176 (257)
T ss_dssp             TTCCEEEEEECS-SCCBTCEEEEEE
T ss_pred             CCCCEEEEEEEC-CcCCCcEEEEEE
Confidence            999999999986 667789999984

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.44  E-value=4.5e-13  Score=81.73  Aligned_cols=82  Identities=13%  Similarity=0.271  Sum_probs=60.3

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCe--eeEeeEEEEEECCCCCC--EEeCCCCceecCCCcEEEEEEcCCCCCC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQD--LHSQVYTVTVLTPPQPP--KISPGANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~--~~~~~~~l~v~~~~~~p--~i~~~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      +.++|+|.+++.+ |+|.|+|.+.+......  ..+..+.|.|..++.+|  .+.......+.+|+.+.|.|.+. +.|.
T Consensus        88 ~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~-g~p~  165 (250)
T 2fbo_J           88 AAPTLRLTHVHPQ-DGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT-DCAN  165 (250)
T ss_dssp             TSCCEEECSCCGG-GCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEE-SCTT
T ss_pred             CcceEEEeeCChh-hCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEec-CCCC
Confidence            3467999999999 99999999998533221  12456788887654333  33332345677899999999986 6788


Q ss_pred             CeEEEEec
Q psy5866          90 PQISVTLQ   97 (98)
Q Consensus        90 ~~~~W~~~   97 (98)
                      |.+.|+++
T Consensus       166 p~v~W~k~  173 (250)
T 2fbo_J          166 ANVTWYTG  173 (250)
T ss_dssp             CEEEEEEE
T ss_pred             CeeEEEeC
Confidence            89999975

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.43  E-value=4e-13  Score=80.45  Aligned_cols=90  Identities=16%  Similarity=0.196  Sum_probs=61.9

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC-CCCEEeC-CCCceecCCCcEEEEEEc
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP-QPPKISP-GANPVATEGRAIELVCST   83 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~-~~p~i~~-~~~~~~~~g~~~~l~C~~   83 (98)
                      |+.+....+.++|+|.+++.+ |+|.|+|.+.+..+ .........|.|...+ .+|.+.. .......+|+.+.|.|.+
T Consensus        58 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~-~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~  135 (211)
T 3tv3_L           58 RFSGSKSGNTASLTVSGLQTD-DEAVYYCGSLVGNW-DVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLI  135 (211)
T ss_dssp             TEEEEEETTEEEEEEESCCGG-GCEEEEEEEEETTT-EEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEE
T ss_pred             cEEEEccCCEEEEEECCCChh-HCEEEEEEEecCCC-ceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEe
Confidence            444444566789999999999 99999999998522 0234455677776332 4455421 133445579999999998


Q ss_pred             CCCCC-CCeEEEEec
Q psy5866          84 SGGSP-DPQISVTLQ   97 (98)
Q Consensus        84 ~~~~p-~~~~~W~~~   97 (98)
                      .+..| .+.+.|+++
T Consensus       136 ~g~~p~~~~v~W~k~  150 (211)
T 3tv3_L          136 SDFYPGAVTVAWKAD  150 (211)
T ss_dssp             EEEBSSCCEEEEEET
T ss_pred             eeecCCCeEEEEEEC
Confidence            74443 678999975

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.43  E-value=1.8e-12  Score=80.46  Aligned_cols=81  Identities=15%  Similarity=0.216  Sum_probs=61.9

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP   90 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~   90 (98)
                      ...+..+|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..+|.. .........+.+|+.+.|.|.+. |.|.+
T Consensus        56 ~~~~~~~L~i~~v~~~-d~G~Y~C~~~n~---~g~~~~~~~l~V~~~p~~-~~~~~~~~~v~~g~~~~l~C~~~-g~p~~  129 (284)
T 2rik_A           56 LVENTATLTVLKVTKG-DAGQYTCYASNV---AGKDSCSAQLGVQEPPRF-IKKLEPSRIVKQDEHTRYECKIG-GSPEI  129 (284)
T ss_dssp             EETTEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECCCEE-EECCCSEEEEETTCCEEEEEEEE-SSSCC
T ss_pred             EcCCEEEEEEecCCcc-cCEEEEEEEEEC---CceEEEEEEEEccCCCcc-cccCCCceEecCCceEEEEEEEe-eeCCC
Confidence            3345678999999999 999999999985   455566778888765432 11222334688999999999985 78999


Q ss_pred             eEEEEec
Q psy5866          91 QISVTLQ   97 (98)
Q Consensus        91 ~~~W~~~   97 (98)
                      .+.|+++
T Consensus       130 ~v~W~~~  136 (284)
T 2rik_A          130 KVLWYKD  136 (284)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999975

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.43  E-value=5.2e-13  Score=83.90  Aligned_cols=82  Identities=21%  Similarity=0.313  Sum_probs=62.9

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      .++++|+|.+++.+ |+|.|+|.+.+..  ....+..+.+.+...+..+.+..........|+.+.|.|.+..|.|.+.+
T Consensus        71 ~~~~sL~I~~v~~~-D~G~Y~C~a~n~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i  147 (308)
T 4fom_A           71 LNDATITLHNIGFS-DSGKYICKAVTFP--LGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHI  147 (308)
T ss_dssp             SSBCCEEECSCCGG-GCEEEEEEEEETT--TEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEE
T ss_pred             CCceEEEEccCCHH-HCEEEEEEEeeCC--CcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceE
Confidence            35578999999999 9999999998852  34555566777776666555544344566678889999987778999999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       148 ~W~~~  152 (308)
T 4fom_A          148 DWEGD  152 (308)
T ss_dssp             EECCC
T ss_pred             EEEEC
Confidence            99864

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.43  E-value=9.5e-13  Score=80.19  Aligned_cols=83  Identities=20%  Similarity=0.230  Sum_probs=54.2

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEEEEEEcCCCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+..  .........|.|.. ++..|.+. ..+...+.+|+.+.|.|.+.+..|.
T Consensus        75 ~~~~~sL~I~~v~~~-D~G~Y~C~~~~~~--~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~  151 (227)
T 1mju_H           75 SSSTAYMQLSSLTSD-DSAVYYCANKLGW--FPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPE  151 (227)
T ss_dssp             TTTEEEEEECSCCGG-GCEEEEEEEEETT--EEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSS
T ss_pred             CCCeEEEEECCCCcc-cCEEEEEEECCCC--ceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCC
Confidence            457889999999999 9999999998841  11222345777764 33445542 1123356789999999999755576


Q ss_pred             C-eEEEEec
Q psy5866          90 P-QISVTLQ   97 (98)
Q Consensus        90 ~-~~~W~~~   97 (98)
                      + .+.|+++
T Consensus       152 p~~v~W~~~  160 (227)
T 1mju_H          152 PVTLTWNSG  160 (227)
T ss_dssp             CCEEEEGGG
T ss_pred             CeEEEEecC
Confidence            6 9999864

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.43  E-value=3.9e-13  Score=79.88  Aligned_cols=78  Identities=24%  Similarity=0.449  Sum_probs=62.5

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      .+|.|.+++.+ |+|.|+|.+.+..+ ....+..+.|.|..+|..+.+.  ....+.+|+.+.|.|.+..+.|.+.+.|+
T Consensus        68 ~~L~i~~~~~~-d~G~Y~C~~~~~~g-~~~~~~~~~l~V~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~v~W~  143 (209)
T 1nbq_A           68 TGITFKSVTRE-DTGTYTCMVSEEGG-NSYGEVKVKLIVLVPPSKPTVN--IPSSATIGNRAVLTCSEQDGSPPSEYTWF  143 (209)
T ss_dssp             TEEECSCCCTT-SCSEEEEEEEETTS-SCEECCEEECCEEBCCCCCCCC--CBSEEETTSCEEECCCCCSCBSCCEEEEE
T ss_pred             cEEEEeeCCHH-HCcEEEEEEecCCC-CccceEEEEEEEecCCcCCCcc--cccceecCCEEEEEEeCCCCCCCceeEEE
Confidence            56999999999 99999999998633 3345566788888777766553  34568899999999997568999999999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       144 ~~  145 (209)
T 1nbq_A          144 KD  145 (209)
T ss_dssp             ET
T ss_pred             EC
Confidence            75

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.43  E-value=8.3e-13  Score=80.93  Aligned_cols=89  Identities=12%  Similarity=0.140  Sum_probs=59.4

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC-----------CCEEeCCCCceecCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-----------PPKISPGANPVATEG   74 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~-----------~p~i~~~~~~~~~~g   74 (98)
                      |+.+....+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|..++.           .+.+.......+.+|
T Consensus        66 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~n~~~--~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  142 (247)
T 1svz_A           66 RFSGSGSGTDFTLKISRVEAE-DLGIYYCFQGSHFP--PTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPG  142 (247)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSSS--CEECCCEEEEEC---------------CCEEEECCCEEECTT
T ss_pred             cEEeccCCCEEEEEECCCCHH-HCEEEEEEEccCCc--cEECCCEEEEEECCccccccccccccCceEEeCCCceeecCC
Confidence            344444456789999999999 99999999987421  1122345677765431           223433344579999


Q ss_pred             CcEEEEEEcCCCC-CCCeEEEEec
Q psy5866          75 RAIELVCSTSGGS-PDPQISVTLQ   97 (98)
Q Consensus        75 ~~~~l~C~~~~~~-p~~~~~W~~~   97 (98)
                      +.+.|.|.+.+.. +.+.+.|+++
T Consensus       143 ~~v~L~C~~~~~~~~~~~v~W~k~  166 (247)
T 1svz_A          143 ETVKISCKATNYAFTDYSMHWVKQ  166 (247)
T ss_dssp             CCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CcEEEEEEEcCcccCCcEEEEEEe
Confidence            9999999986432 3578999985

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.42  E-value=1e-12  Score=79.92  Aligned_cols=85  Identities=18%  Similarity=0.228  Sum_probs=56.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCC----Ce--eeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEEEEEEc
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSG----QD--LHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIELVCST   83 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~----~~--~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~l~C~~   83 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+..+.    ..  .......|.|.. ++.+|.+. ..+...+.+|+.+.|.|.+
T Consensus        76 ~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~  154 (228)
T 3bae_H           76 SRDMVFMKITSVDTA-DTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLV  154 (228)
T ss_dssp             TTTEEEEEECSCCGG-GCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEE
T ss_pred             CCCeEEEEEcCCCcc-cCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEE
Confidence            456789999999999 999999999884210    01  122336777763 33455552 1123346789999999999


Q ss_pred             CCCCCCC-eEEEEec
Q psy5866          84 SGGSPDP-QISVTLQ   97 (98)
Q Consensus        84 ~~~~p~~-~~~W~~~   97 (98)
                      .+..|.+ .+.|+++
T Consensus       155 ~g~~P~p~~v~W~~~  169 (228)
T 3bae_H          155 KGYFPEPVTLTWNSG  169 (228)
T ss_dssp             EEEBSSCCEEEEGGG
T ss_pred             ccEeCCCEEEEEeeC
Confidence            7555777 9999864

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.42  E-value=3e-12  Score=79.25  Aligned_cols=83  Identities=20%  Similarity=0.124  Sum_probs=57.8

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCC--CeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSG--QDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSP   88 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p   88 (98)
                      ...+.++|+|.+++.+ |+|.|+|.+.+..+.  .......+.|.|..++  ..........+.+|+++.|.|.+. +.|
T Consensus        74 ~~~~~~~L~I~~v~~~-DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~--~v~~~p~~~~v~~G~~v~L~C~~~-~~~  149 (256)
T 1nqb_A           74 KPSSTAYMQLSSLTSE-DSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDI--ELTQTPLSLPVSLGDQASISCRSS-QSI  149 (256)
T ss_dssp             TTTTEEEEEECSCCGG-GCEEEEEEECCTTSSSSCSEECCCEEEEECCCC--CEEEECSEEEECTTCCEEEEEEES-SCC
T ss_pred             cCCCEEEEEECcCChh-hCEEEEEEEeeccCccceeEEcCceeeeecccc--cEEecCcEEEEecCCcEEEEeEec-Ccc
Confidence            3466789999999999 999999999985321  1122234567775332  222222445789999999999986 455


Q ss_pred             C-----CeEEEEec
Q psy5866          89 D-----PQISVTLQ   97 (98)
Q Consensus        89 ~-----~~~~W~~~   97 (98)
                      .     +.+.|+++
T Consensus       150 ~~~~~~~~v~W~k~  163 (256)
T 1nqb_A          150 VHSNGNTYLEWYLQ  163 (256)
T ss_dssp             BCTTSCBCEEEEEE
T ss_pred             cccccceEEEEEEE
Confidence            4     49999984

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.42  E-value=2.1e-12  Score=78.20  Aligned_cols=78  Identities=22%  Similarity=0.356  Sum_probs=57.6

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      ..++++|+|.+++.+ |+|.|+|.+.+.   .......+.+.+..++..+.    ....+.+|..+.+.|.+.++.|.|.
T Consensus        79 ~~~~~~L~I~~v~~~-D~G~Y~C~a~n~---~~~~~~~v~~~~~~~~~~~~----~~~~~~~g~~v~l~c~~~g~~P~p~  150 (226)
T 4f80_A           79 TAGKAALRIHNVTAS-DSGKYLCYFQDG---DFYEKALVELKVAALGSDLH----VDVKGYKDGGIHLECRSTGWYPQPQ  150 (226)
T ss_dssp             GGTEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEBCCCCCE----EEEEEEETTEEEEEEEEEEEBSCCE
T ss_pred             cCCeEEEEEeeCchH-HCeeEEEEEECC---CcEEEEEEEEeeccceeccc----ceeeeccCCceeeEEEeccCCCCCE
Confidence            346789999999999 999999999984   44444445554443322222    2346778999999999976679999


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|++.
T Consensus       151 i~W~k~  156 (226)
T 4f80_A          151 IQWSNN  156 (226)
T ss_dssp             EEEECT
T ss_pred             EEEEEC
Confidence            999873

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.42  E-value=8.1e-13  Score=79.18  Aligned_cols=89  Identities=18%  Similarity=0.224  Sum_probs=59.6

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC-CCCEEeC-CCCceecCCCcEEEEEEc
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP-QPPKISP-GANPVATEGRAIELVCST   83 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~-~~p~i~~-~~~~~~~~g~~~~l~C~~   83 (98)
                      |+......+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|...+ .+|.+.. .......+|+.+.|.|.+
T Consensus        63 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~--~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~  139 (212)
T 1q0x_L           63 RFSGSLIGDKAALTITGAQTE-DEAIYFCALWSNNK--LVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTI  139 (212)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEEECSSC--EEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEE
T ss_pred             cEEEEeeCCEEEEEECCCCcc-CCEEEEEEEecCch--hhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEE
Confidence            344333456789999999999 99999999998521  222334566664332 3455521 133345578899999999


Q ss_pred             CCCCCCC-eEEEEec
Q psy5866          84 SGGSPDP-QISVTLQ   97 (98)
Q Consensus        84 ~~~~p~~-~~~W~~~   97 (98)
                      .++.|++ .+.|+++
T Consensus       140 ~g~~p~~~~v~W~k~  154 (212)
T 1q0x_L          140 TDFYPGVVTVDWKVD  154 (212)
T ss_dssp             EEEBSSCCEEEEEET
T ss_pred             EEEeCCCeEEEEEEC
Confidence            7555554 8999975

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.42  E-value=4.9e-13  Score=81.90  Aligned_cols=78  Identities=19%  Similarity=0.381  Sum_probs=53.5

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC-e
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP-Q   91 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~-~   91 (98)
                      .++++|+|.+++.+ |+|.|+|.+.+.   .......+.|.|..+|.. .+.  .......|..+.|.|.+.++.|.+ .
T Consensus        79 ~~~~sL~I~~v~~~-D~G~Y~C~~~~~---~~~~~~~~~L~V~~~P~v-~~~--~~~~~~~~~~~~L~C~~~g~~P~pi~  151 (248)
T 3pv7_A           79 SGDASLRLPGIQLE-EAGEYRCEVVVT---PLKAQGTVQLEVVASPAS-RLL--LDQVGMKENEDKYMCESSGFYPEAIN  151 (248)
T ss_dssp             TTBCCEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEBCCEE-EEE--CC--------CEEEEEEEEEBSSCCE
T ss_pred             CCcEEEEeCCCCHH-HCeEEEEEEEeC---CccceeEEEEEEecCCce-EEe--cCCccccCCCcEEEEEEccEECCCeE
Confidence            34567999999999 999999999984   445566778888765442 222  224455677888999997558888 9


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       152 v~W~k~  157 (248)
T 3pv7_A          152 ITWEKQ  157 (248)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999975

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.42  E-value=1.8e-12  Score=77.16  Aligned_cols=80  Identities=18%  Similarity=0.346  Sum_probs=59.7

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      ...|.|.+++.+ |+|.|+|.+.+...+....+..+.|.|...+..|.+...+...+.+|+.+.|.|.+. +. .+.+.|
T Consensus        57 ~~~L~i~~v~~~-D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~-~~-~~~v~W  133 (198)
T 1ugn_A           57 KGQFPIPSITWE-HTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQ-VA-FDGFIL  133 (198)
T ss_dssp             TTEEEESSCCGG-GCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECS-SC-CSEEEE
T ss_pred             ccEEEECCCCHH-HCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecC-CC-CcEEEE
Confidence            356999999999 999999999885311112345577888765556666433446889999999999986 44 689999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       134 ~k~  136 (198)
T 1ugn_A          134 CKE  136 (198)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            975

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.42  E-value=2.9e-12  Score=76.28  Aligned_cols=75  Identities=13%  Similarity=0.219  Sum_probs=59.8

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|.|.+++.. |+|.|+|.+.+..  .......+.|.|..++..|.+...... +.+|+.+.|.|.+. +.| |.+.|++
T Consensus        72 ~L~i~~v~~~-D~G~Y~C~~~~~~--~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~-~~p-p~i~W~~  145 (208)
T 3r4d_A           72 SLLFQMITMK-DMGVYTLDMTDEN--YRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLSN-DIG-ANIQWLF  145 (208)
T ss_dssp             CEEECSCCGG-GCEEEEEEEECSS--CEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEECS-CTT-CEEEEEE
T ss_pred             eEEEcccccc-CCeEEEEEEEccc--CceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEECC-CCC-CceEEEE
Confidence            6999999999 9999999999852  245566678888877777777543333 88999999999986 455 7999997


Q ss_pred             c
Q psy5866          97 Q   97 (98)
Q Consensus        97 ~   97 (98)
                      +
T Consensus       146 ~  146 (208)
T 3r4d_A          146 N  146 (208)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.42  E-value=2.8e-12  Score=75.94  Aligned_cols=82  Identities=12%  Similarity=0.237  Sum_probs=59.9

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      .....+|.|.+++.+ |+|.|+|.+.+... ....+..+.|.|.....+|.+...+...+.+|+.+.|.|.+. + +.+.
T Consensus        53 ~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~-~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~-~-~~~~  128 (188)
T 1oll_A           53 RINKVKFYIPDMNSR-MAGQYSCIYRVGEL-WSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLD-T-ATSM  128 (188)
T ss_dssp             TCCEEEEEESSCCGG-GCEEEEEEEEETTE-ECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECS-S-SCSE
T ss_pred             CcceeEEEeCcCCcc-cCeEEEEEecCCCC-CCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcC-C-CCCE
Confidence            345678999999999 99999999987311 112345577888755556666433456789999999999975 3 4578


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       129 ~~w~k~  134 (188)
T 1oll_A          129 FLLLKE  134 (188)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999875

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.42  E-value=5.7e-13  Score=79.80  Aligned_cols=89  Identities=11%  Similarity=0.150  Sum_probs=60.4

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEEEEcC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELVCSTS   84 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~C~~~   84 (98)
                      ++......+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|...+.+|.+.. .......+|+.+.|.|.+.
T Consensus        60 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~--~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~  136 (210)
T 1lk3_L           60 RFSGSGSGTDFTLTIDPVEAD-DTAIYFCQQSWNGP--LTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMN  136 (210)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSSS--CEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEE
T ss_pred             cEEEEecCCEEEEEECCCCHH-HCeEEEEEEEcCCC--ceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEE
Confidence            344333456779999999999 99999999987522  1222234677765444555521 1333455899999999997


Q ss_pred             CCCCCC-eEEEEec
Q psy5866          85 GGSPDP-QISVTLQ   97 (98)
Q Consensus        85 ~~~p~~-~~~W~~~   97 (98)
                      ++.|.+ .+.|+++
T Consensus       137 g~~p~~~~v~W~k~  150 (210)
T 1lk3_L          137 NFYPRDISVKWKID  150 (210)
T ss_dssp             EEBSSCCEEEEEET
T ss_pred             eEeCCceEEEEEeC
Confidence            546654 8999975

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.42  E-value=4.5e-13  Score=80.27  Aligned_cols=89  Identities=12%  Similarity=0.160  Sum_probs=61.0

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEEEEcC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELVCSTS   84 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~C~~~   84 (98)
                      ++......+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|...+.+|.+.. .......+|+.+.|.|.+.
T Consensus        61 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~--~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~  137 (213)
T 3d9a_L           61 RFSGSGSGTDFTLSINSVETE-DFGMYFCQQSNSWP--YTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLN  137 (213)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSSS--CEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEE
T ss_pred             cEEEEcCCCEEEEEECCCChh-hCEEEEEeeecCCc--ceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEe
Confidence            344433456779999999999 99999999987522  2222335677765544555421 2333455788999999997


Q ss_pred             CCCCCC-eEEEEec
Q psy5866          85 GGSPDP-QISVTLQ   97 (98)
Q Consensus        85 ~~~p~~-~~~W~~~   97 (98)
                      ++.|.+ .+.|+++
T Consensus       138 g~~p~~~~v~W~k~  151 (213)
T 3d9a_L          138 NFYPKDINVKWKID  151 (213)
T ss_dssp             EEBSSCCEEEEEET
T ss_pred             eecCCceEEEEEcC
Confidence            546665 8999975

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.42  E-value=3.7e-12  Score=79.02  Aligned_cols=79  Identities=24%  Similarity=0.306  Sum_probs=61.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      ..+...|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..+|...  .......+.+|+.+.|.|.+. |.|.+.
T Consensus       151 ~~~~~~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~~~p~~~--~~~~~~~~~~g~~v~l~C~~~-g~p~~~  223 (284)
T 2rik_A          151 VESVAVLEMYNLSVE-DSGDYTCEAHNA---AGSASSSTSLKVKEPPVFR--KKPHPVETLKGADVHLECELQ-GTPPFQ  223 (284)
T ss_dssp             ETTEEEEEECSCCGG-GCEEEEEEEECS---SCEEEEEEEEEEECCCBCC--SCCCCEEECTTCCEEEEEECB-SSSCCE
T ss_pred             cCCEEEEEECCCCcc-cCEEEEEEEEcC---CCceeEEEEEEEecCCcce--eCCCcceecCCCeEEEEEEEE-ecCCCE
Confidence            345678999999999 999999999985   3455667788887655431  112346788999999999985 789999


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       224 v~W~~~  229 (284)
T 2rik_A          224 VSWHKD  229 (284)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999975

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.41  E-value=3.7e-12  Score=75.12  Aligned_cols=75  Identities=19%  Similarity=0.329  Sum_probs=59.3

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS   93 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~   93 (98)
                      .+..|.|.+++.+ |+|.|+|.+.+.    ...+..+.|.|..+|..  ........+.+|+.+.|.|.+. |.|.|.+.
T Consensus        54 ~~~~L~i~~~~~~-d~G~Y~C~~~n~----~~~~~~~~l~V~~~p~~--~~~~~~~~~~~g~~v~l~C~~~-g~p~p~i~  125 (190)
T 2wv3_A           54 SNMEYRINKPRAE-DSGEYHCVYHFV----SAPKANATIEVKAAPDI--TGHKRSENKNEGQDAMMYCKSV-GYPHPEWM  125 (190)
T ss_dssp             SEEEEEESSCCGG-GCEEEEEEEEET----TEEEEEEEEEEECCCEE--EEECSEEEEETTSCEEEEEEEE-CSSCCEEE
T ss_pred             ccEEEEEecCCcc-cCEEEEEEEEeC----CcccccEEEEEecCCcc--cccCCcceeeCCCcEEEEEEeC-ccCCCceE
Confidence            4578999999999 999999999984    34556677888765432  2222456789999999999985 78999999


Q ss_pred             EEe
Q psy5866          94 VTL   96 (98)
Q Consensus        94 W~~   96 (98)
                      |++
T Consensus       126 W~~  128 (190)
T 2wv3_A          126 WRK  128 (190)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.41  E-value=1.1e-11  Score=73.29  Aligned_cols=77  Identities=19%  Similarity=0.327  Sum_probs=58.2

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC-eEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP-QIS   93 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~   93 (98)
                      ..+|.|.+++.. |+|.|+|.+.+..  ....+..+.|.|..+|.  .........+.+|+.+.|.|.+. |.|.| .+.
T Consensus        67 ~~~L~i~~~~~~-d~G~Y~C~~~~~~--~~~~~~~~~l~V~~~p~--~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~~v~  140 (195)
T 2c5d_C           67 VSQLRITSLQLS-DTGQYQCLVFLGH--QTFVSQPGYVGLEGLPY--FLEEPEDRTVAANTPFNLSCQAQ-GPPEPVDLL  140 (195)
T ss_dssp             EEEEEESSCCST-TCEEEEEEEEETT--EEEECCCEEEEECCSCE--EEECCCCEEECTTCCEEEEEEEE-CSSCCCEEE
T ss_pred             ccEEEEEecccc-CCcEEEEEEEeCC--CceecccEEEEEecCCe--EEcCCCcEEEcCCCEEEEEeECC-CCCCCCEEE
Confidence            468999999999 9999999999852  12333447788865542  22223456888999999999985 77888 999


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |+++
T Consensus       141 W~~~  144 (195)
T 2c5d_C          141 WLQD  144 (195)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            9975

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.41  E-value=4.1e-12  Score=74.73  Aligned_cols=79  Identities=20%  Similarity=0.286  Sum_probs=61.0

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      .+..+|.|.+++.+ |+|.|+|.+.+..+  ...+..+.|.|..+|.  .........+.+|+.+.|.|.+. +.|.|.+
T Consensus        59 ~~~~~L~i~~~~~~-d~G~Y~C~~~~~~~--~~~~~~~~l~v~~~p~--~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~v  132 (191)
T 1epf_A           59 DDSSTLTIYNANID-DAGIYKCVVTAEDG--TQSEATVNVKIFQKLM--FKNAPTPQEFKEGEDAVIVCDVV-SSLPPTI  132 (191)
T ss_dssp             TTEEEEEECSCCGG-GCEEEEEEEEETTT--EEEEEEEEEEEECCSE--EEECCSSEECCTTSCEEECCEEE-CSSCCEE
T ss_pred             CCceEEEEccCCcc-cCEEEEEEEEcCCC--cceEEEEEEEeecCce--EecCCCcEeecCCCeEEEEEEEC-CCCCCEE
Confidence            45678999999999 99999999999532  4555667777764433  22223456788999999999986 7899999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       133 ~W~~~  137 (191)
T 1epf_A          133 IWKHK  137 (191)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99875

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.41  E-value=3.5e-12  Score=77.53  Aligned_cols=78  Identities=19%  Similarity=0.331  Sum_probs=59.3

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|.|.+++.+ |+|.|+|.+.+..+ ....+..+.|.|...+.+|.+...+...+.+|+.+.|.|.+. +.|.+.+.|++
T Consensus        65 ~L~I~~v~~~-D~G~Y~C~a~n~~~-~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~-~~~~~~~~W~k  141 (218)
T 1uct_A           65 EFVIDHMDAN-KAGRYQCQYRIGHY-RFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSA-HIPFDRFSLAK  141 (218)
T ss_dssp             EEEECSCCGG-GCEEEEEEEEETTT-EEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECS-SSCCSEEEEEE
T ss_pred             EEEEcccccc-cCEEEEEEEEcCCC-ceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCC-CCCCCEEEEEE
Confidence            7999999999 99999999998521 123345577888765556666433456889999999999653 56778999997


Q ss_pred             c
Q psy5866          97 Q   97 (98)
Q Consensus        97 ~   97 (98)
                      +
T Consensus       142 ~  142 (218)
T 1uct_A          142 E  142 (218)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.41  E-value=3.2e-12  Score=78.80  Aligned_cols=85  Identities=18%  Similarity=0.152  Sum_probs=59.6

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCC-CCeeeEeeEEEEEECCC-------------CCCEE-eCCCCceecCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGS-GQDLHSQVYTVTVLTPP-------------QPPKI-SPGANPVATEGR   75 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~-~~~~~~~~~~l~v~~~~-------------~~p~i-~~~~~~~~~~g~   75 (98)
                      ...+.++|+|.+++.+ |+|.|+|.+.+... ..........|.|...+             ..|.+ .......+.+|+
T Consensus        76 ~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~  154 (256)
T 3umt_A           76 KSSSTAYLELRSLTSE-DSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGE  154 (256)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTC
T ss_pred             cCCCEEEEEECCCCcc-cCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCC
Confidence            4456788999999999 99999999987411 11223344667776421             13333 222346889999


Q ss_pred             cEEEEEEcCCCCCCCeEEEEec
Q psy5866          76 AIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        76 ~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+.|.|.+. +.|.+.+.|+++
T Consensus       155 ~v~L~C~~~-~~~~~~v~W~k~  175 (256)
T 3umt_A          155 RVSITCRAS-QDIGSNLNWLQQ  175 (256)
T ss_dssp             CEEEEEEES-SCCTTCEEEEEE
T ss_pred             CEEEEEEEe-cCCCcEEEEEEE
Confidence            999999986 577789999985

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.41  E-value=1.2e-12  Score=80.26  Aligned_cols=88  Identities=16%  Similarity=0.201  Sum_probs=58.9

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC-----------------CCCEEeCCCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP-----------------QPPKISPGAN   68 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~-----------------~~p~i~~~~~   68 (98)
                      |+......+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|..++                 .++.+.....
T Consensus        64 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~n~~~--~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (250)
T 3esu_F           64 RFSGSGSGTDYSLTISNLEQE-DIGTYFCQQGNTLP--WTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGP  140 (250)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSSS--CEECCCEEEEEC------------------------CEECCC
T ss_pred             CEEEeCCCCEEEEEEccCChh-hCEEEEEEEeeCCC--ceECCCEEEEEECCCCcccccccccccccCcccceEEecCCc
Confidence            344444566779999999999 99999999987422  222333466665431                 1223322355


Q ss_pred             ceecCCCcEEEEEEcCCCCC--CCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSP--DPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~   97 (98)
                      ..+.+|+.+.|.|.+. +.|  .+.+.|+++
T Consensus       141 ~~v~~G~~v~L~C~~~-~~~~~~~~v~W~k~  170 (250)
T 3esu_F          141 ELVKPGASVKISCKDS-GYAFSSSWMNWVKQ  170 (250)
T ss_dssp             EEECTTCCEEEEEECC-STTGGGSEEEEEEE
T ss_pred             eEEcCCceEEEEEEec-CCcccCCEEEEEEE
Confidence            6789999999999986 445  789999986

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.41  E-value=3.8e-12  Score=77.41  Aligned_cols=84  Identities=17%  Similarity=0.185  Sum_probs=57.6

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCC--CeeeEeeEEEEEECCCCC---------CEE-eCCCCceecCCCcEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSG--QDLHSQVYTVTVLTPPQP---------PKI-SPGANPVATEGRAIEL   79 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~~~~~---------p~i-~~~~~~~~~~g~~~~l   79 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+..+.  .........|.|...+..         +.+ .......+.+|+.+.|
T Consensus        69 ~~~~~~L~I~~v~~~-DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L  147 (238)
T 2p1y_A           69 SQENFSLILELATPS-QTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAIL  147 (238)
T ss_dssp             SSSBCEEEESSCCGG-GCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEE
T ss_pred             CCceEEEEEecCCcc-cCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEE
Confidence            345678999999999 999999999874221  112223456777654420         022 2224467899999999


Q ss_pred             EEEcCCCCCCCeEEEEec
Q psy5866          80 VCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        80 ~C~~~~~~p~~~~~W~~~   97 (98)
                      .|.+. +.|.+.+.|+++
T Consensus       148 ~C~~~-~~p~~~i~W~k~  164 (238)
T 2p1y_A          148 NCSYE-NSAFDYFPWYQQ  164 (238)
T ss_dssp             EEECC-CTTCCEEEEEEE
T ss_pred             EEEEe-cCCCCcEEEEEE
Confidence            99985 678899999985

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.40  E-value=1.3e-11  Score=74.06  Aligned_cols=79  Identities=25%  Similarity=0.308  Sum_probs=60.9

Q ss_pred             CeEEEEEccce-eeccCeEEEEEEEECCCCCeeeEeeEEEEEECC----CCCCEEe-CCCCceecCCCcEEEEEEcCCCC
Q psy5866          14 GRYDLIISNAS-FERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP----PQPPKIS-PGANPVATEGRAIELVCSTSGGS   87 (98)
Q Consensus        14 ~~~~l~I~~v~-~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~----~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~   87 (98)
                      ....|.|.++. .. |+|.|+|.+.+.   ....+..+.|.|..+    +..|.+. ......+.+|+.+.|.|.+. |.
T Consensus        61 ~~~~L~i~~v~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-g~  135 (212)
T 2yd6_A           61 SGSVLRIQPLRTPR-DEAIYECVASNN---VGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAAS-GN  135 (212)
T ss_dssp             TEEEEEECSCCTTT-TCEEEEEEEEET---TEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEE-CS
T ss_pred             CceEEEEeccCCCC-CCeEEEEEEEcC---CCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEec-CC
Confidence            45679999994 99 999999999985   445566778888753    3345552 22445788899999999985 78


Q ss_pred             CCCeEEEEec
Q psy5866          88 PDPQISVTLQ   97 (98)
Q Consensus        88 p~~~~~W~~~   97 (98)
                      |.|.+.|+++
T Consensus       136 p~p~v~W~~~  145 (212)
T 2yd6_A          136 PDPEITWFKD  145 (212)
T ss_dssp             SCCEEEEEET
T ss_pred             CCCeEEEEEC
Confidence            9999999975

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.40  E-value=1.2e-12  Score=80.32  Aligned_cols=88  Identities=13%  Similarity=0.186  Sum_probs=58.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC-----------CCEEeCCCCceecCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-----------PPKISPGANPVATEG   74 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~-----------~p~i~~~~~~~~~~g   74 (98)
                      |+.+....+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|..++.           +..+.......+.+|
T Consensus        61 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~n~~~--~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G  137 (242)
T 2znx_A           61 RFSGSGSGTDFTLSINSVETE-DFGMYFCQQSNSXP--YTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPS  137 (242)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSSS--CEECCCEEEEEC---------------CCEEEEECCSEECTT
T ss_pred             CEEEecCCCEEEEEECCCChH-HCEEEEEeEecCCc--eEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCC
Confidence            344433456789999999999 99999999987521  1222345677765442           123322234578999


Q ss_pred             CcEEEEEEcCCCCC--CCeEEEEec
Q psy5866          75 RAIELVCSTSGGSP--DPQISVTLQ   97 (98)
Q Consensus        75 ~~~~l~C~~~~~~p--~~~~~W~~~   97 (98)
                      +++.|.|.+. +.|  .+.+.|+++
T Consensus       138 ~~v~L~C~~~-g~~~~~~~v~W~k~  161 (242)
T 2znx_A          138 QTLSLTCSVT-GDSITSDYXSXIRK  161 (242)
T ss_dssp             SCEEEEEEEE-SSCGGGSCEEEEEE
T ss_pred             CeEEEEEEEE-ccccCCcceeeEee
Confidence            9999999986 444  578999985

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.40  E-value=4.7e-12  Score=75.64  Aligned_cols=82  Identities=16%  Similarity=0.284  Sum_probs=60.3

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCC--CeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSG--QDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP   90 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~   90 (98)
                      .....|.|.+++.+ |+|.|+|.+.+....  ....+..+.|.|...+.+|.+...+...+.+|+.++|.|.+. + +.+
T Consensus        60 ~~~~~l~I~~v~~~-D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~-~-~~~  136 (201)
T 1nkr_A           60 VSKANFSISRMTQD-LAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSR-S-SYD  136 (201)
T ss_dssp             EEEEEEEESSCCGG-GCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEES-S-CCS
T ss_pred             CceEEEEeccCCcc-cCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCC-C-CCc
Confidence            34567999999999 999999999864211  122345577888766666776332345789999999999986 3 568


Q ss_pred             eEEEEec
Q psy5866          91 QISVTLQ   97 (98)
Q Consensus        91 ~~~W~~~   97 (98)
                      .+.|+++
T Consensus       137 ~~~w~k~  143 (201)
T 1nkr_A          137 MYHLSRE  143 (201)
T ss_dssp             EEEEEET
T ss_pred             eEEEEEC
Confidence            8999875

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.40  E-value=1.7e-12  Score=79.06  Aligned_cols=88  Identities=14%  Similarity=0.212  Sum_probs=61.3

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC----CCEEeCCCCceecCCCcEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ----PPKISPGANPVATEGRAIELVC   81 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~----~p~i~~~~~~~~~~g~~~~l~C   81 (98)
                      |+.+....+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|..++.    ...+.......+.+|+.+.|.|
T Consensus        65 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~n~~~--~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C  141 (240)
T 1moe_A           65 RFSGTGSRTDFTLIIDPVEAD-DVATYYCQQTNEDP--YTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSC  141 (240)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSSS--CCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEE
T ss_pred             cEEEEecCCeEEEEEcCCChh-hCEEEEEEEccCCc--eeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEE
Confidence            333333456778999999999 99999999988522  1233446777765432    2233333556889999999999


Q ss_pred             EcCCCCC--CCeEEEEec
Q psy5866          82 STSGGSP--DPQISVTLQ   97 (98)
Q Consensus        82 ~~~~~~p--~~~~~W~~~   97 (98)
                      .+. +.|  .+.+.|+++
T Consensus       142 ~~~-g~p~~~~~v~W~k~  158 (240)
T 1moe_A          142 TAS-GFNIKDTYMHWVKQ  158 (240)
T ss_dssp             EEE-SSCGGGSCEEEEEE
T ss_pred             EEc-CccCCCCEEEEEEE
Confidence            986 444  468999985

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.40  E-value=2.4e-12  Score=81.65  Aligned_cols=82  Identities=20%  Similarity=0.270  Sum_probs=63.0

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCC--eeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQ--DLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP   90 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~--~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~   90 (98)
                      .+..+|+|.+++.+ |+|.|+|.+.+..+..  ...+..+.|.|..+|..|.+.. +...+.+|+.+.|.|.+. +.|++
T Consensus        71 ~~~~~L~I~~v~~~-D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~-~~~~~~~g~~~~l~C~~~-g~p~~  147 (327)
T 2wng_A           71 NMDFSISISNITPA-DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSG-PAARATPQHTVSFTCESH-GFSPR  147 (327)
T ss_dssp             CCBCCEEECSCCGG-GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEEC-CSSCBCTTCEEEEEEEEE-EEBSS
T ss_pred             CceeEEEEccCccc-cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeec-cccccCCCCEEEEEEEEe-CccCC
Confidence            45667999999999 9999999999863321  1223457888888888888863 456789999999999997 44444


Q ss_pred             --eEEEEec
Q psy5866          91 --QISVTLQ   97 (98)
Q Consensus        91 --~~~W~~~   97 (98)
                        .+.|+++
T Consensus       148 ~~~v~W~k~  156 (327)
T 2wng_A          148 DITLKWFKN  156 (327)
T ss_dssp             CCEEEEEET
T ss_pred             CcEEEEEEC
Confidence              8999975

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.40  E-value=3e-12  Score=78.79  Aligned_cols=87  Identities=20%  Similarity=0.142  Sum_probs=60.1

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC------------CCCCEE-eCCCCceecC
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP------------PQPPKI-SPGANPVATE   73 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~------------~~~p~i-~~~~~~~~~~   73 (98)
                      +..+...+.++|+|.+++.+ |+|.|+|.+.+..  .........|.|...            ...+.+ .......+.+
T Consensus        71 ~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~~--~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~  147 (253)
T 3uzq_A           71 ITADTSSNTAYLHLSSLTSG-DTAVYYCSRGWEG--FAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSL  147 (253)
T ss_dssp             EEEETTTTEEEEEECSCCGG-GCEEEEEEECSSS--CCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECT
T ss_pred             EEeecCCCeEEEEeCCCCcc-cCEEEEEEEeeCC--ccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeC
Confidence            33445567889999999999 9999999998742  122234456777632            112233 2223468999


Q ss_pred             CCcEEEEEEcCCCCCCC----eEEEEec
Q psy5866          74 GRAIELVCSTSGGSPDP----QISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~~----~~~W~~~   97 (98)
                      |+++.|.|.+. +.|.+    .+.|+++
T Consensus       148 G~~v~L~C~~~-~~~~~~~~~~v~W~r~  174 (253)
T 3uzq_A          148 GQRATISCRAS-ENVDRYGNSFMHWYQQ  174 (253)
T ss_dssp             TSCEEEEEEES-SCCEETTEECEEEEEE
T ss_pred             CCCEEEEEEec-CccccCCCcEEEEEEE
Confidence            99999999986 56665    8999985

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.40  E-value=1e-12  Score=81.18  Aligned_cols=87  Identities=22%  Similarity=0.292  Sum_probs=57.4

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCC-CeeeEeeEEEEEE-CCCCCCEEe-CCCCceecCCCcEEEEEEcCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSG-QDLHSQVYTVTVL-TPPQPPKIS-PGANPVATEGRAIELVCSTSGG   86 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~-~~~~~~~~~l~v~-~~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~   86 (98)
                      +...+.++|+|.+++.+ |+|.|+|.+.+.... .........|.|. ..+..|.+. ......+.+|+.+.|.|.+.++
T Consensus        73 ~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~  151 (253)
T 3liz_H           73 DNAKNTLFLQMSSLKSE-DTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY  151 (253)
T ss_dssp             EGGGTEEEEEECSCCGG-GCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEE
T ss_pred             eCCCCEEEEEECCCChh-hCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeE
Confidence            34467889999999999 999999999874211 1222334577776 444556553 2233456679999999999765


Q ss_pred             CCCC-eEEEEec
Q psy5866          87 SPDP-QISVTLQ   97 (98)
Q Consensus        87 ~p~~-~~~W~~~   97 (98)
                      .|.+ .+.|+++
T Consensus       152 ~P~~~~v~W~~~  163 (253)
T 3liz_H          152 FPEPVTVTWNSG  163 (253)
T ss_dssp             BSSCCEEEEGGG
T ss_pred             eCCCeEEEEEeC
Confidence            7766 8999864

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.40  E-value=7.7e-13  Score=84.72  Aligned_cols=83  Identities=18%  Similarity=0.180  Sum_probs=59.9

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE-CCCCCCEEe-CCCCceecCCCcEEEEEEcCCCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL-TPPQPPKIS-PGANPVATEGRAIELVCSTSGGSP   88 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~-~~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p   88 (98)
                      ...+.++|+|.+++.+ |+|.|+|.+.+.   .........|.|. .++.+|.+. ..+...+.+|+.+.|.|.+.++.|
T Consensus        74 ~~~~~~~L~I~~v~~~-D~G~Y~C~~~n~---~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  149 (344)
T 1za6_B           74 TSASTAYVELSSLRSE-DTAVYFCTRSLN---MAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  149 (344)
T ss_dssp             TTTTEEEEEECSCCGG-GCEEEEEEETTT---TCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBS
T ss_pred             cCCCEEEEEECCCCcc-cCEEEEEEEecC---cceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEEC
Confidence            3456789999999999 999999999873   2233344678886 344555552 123345689999999999975556


Q ss_pred             C-CeEEEEec
Q psy5866          89 D-PQISVTLQ   97 (98)
Q Consensus        89 ~-~~~~W~~~   97 (98)
                      . +.+.|+++
T Consensus       150 ~~~~v~W~k~  159 (344)
T 1za6_B          150 EPVTVSWNSG  159 (344)
T ss_dssp             SCCCEEETTT
T ss_pred             CCeEEEEecC
Confidence            5 79999864

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.39  E-value=1.2e-11  Score=83.96  Aligned_cols=87  Identities=16%  Similarity=0.261  Sum_probs=64.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEe-CCCCceecCCCcEEEEEEcC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS-PGANPVATEGRAIELVCSTS   84 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~-~~~~~~~~~g~~~~l~C~~~   84 (98)
                      ++.+....+..+|.|.+++.+ |+|.|+|.+.|.   .+.......+.|...+.+|.+. ...+....+|+.+.|.|.+.
T Consensus        51 ~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~---~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~  126 (570)
T 3b43_A           51 AYKMQFKNNVASLVINKVDHS-DVGEYTCKAENS---VGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRIN  126 (570)
T ss_dssp             SEEEECCTTEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEE
T ss_pred             CEEEEEECCEEEEEEccCChh-hCEEEEEEEEeC---CceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEc
Confidence            344455566788999999999 999999999985   3444445566665444455552 22456678899999999986


Q ss_pred             CCCCCCeEEEEec
Q psy5866          85 GGSPDPQISVTLQ   97 (98)
Q Consensus        85 ~~~p~~~~~W~~~   97 (98)
                       |.|.+.+.|+++
T Consensus       127 -g~p~~~v~W~k~  138 (570)
T 3b43_A          127 -GSEPLQVSWYKD  138 (570)
T ss_dssp             -SSSSCEEEEEET
T ss_pred             -cCCCCEEEEEEC
Confidence             788899999985

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.39  E-value=6.4e-12  Score=73.45  Aligned_cols=77  Identities=21%  Similarity=0.261  Sum_probs=59.1

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC-eEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP-QIS   93 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~   93 (98)
                      ..+|.|.+++.+ |+|.|+|.+.+..  ....+..+.|.|..+|.  .........+.+|+.+.|.|.+. +.|.| .+.
T Consensus        59 ~~~L~i~~~~~~-d~G~Y~C~~~~~~--~~~~~~~~~l~V~~~p~--~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~~v~  132 (182)
T 1rhf_A           59 IGFLSLKSVERS-DAGRYWCQVEDGG--ETEISQPVWLTVEGVPF--FTVEPKDLAVPPNAPFQLSCEAV-GPPEPVTIV  132 (182)
T ss_dssp             EEEEEESSCCGG-GCEEEEEEESSCT--TCEECCCEEEEEECSCE--EEECCCCEEECTTCCEEEEEEEE-CSSSCCEEE
T ss_pred             eEEEEEeecCcc-cCeEEEEEEEcCC--CcEEEEEEEEEEecCCe--EEecCcceEecCCCEEEEEeEec-CCCCCCEEE
Confidence            568999999999 9999999998742  23345567788875543  22223456789999999999986 78888 999


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |+++
T Consensus       133 W~~~  136 (182)
T 1rhf_A          133 WWRG  136 (182)
T ss_dssp             EEET
T ss_pred             EEcC
Confidence            9975

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.39  E-value=9.1e-13  Score=77.62  Aligned_cols=87  Identities=15%  Similarity=0.158  Sum_probs=61.1

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCE-EeCCCCceecCCCcEEEEEEcC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPK-ISPGANPVATEGRAIELVCSTS   84 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~-i~~~~~~~~~~g~~~~l~C~~~   84 (98)
                      ++......+..+|+|.+++.+ |+|.|+|.+.+.   .......+.+.|..+|.... ........+.+|+.+.|.|.+.
T Consensus        53 ~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~n~---~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~  128 (197)
T 3lcy_A           53 KYKMSSDGRTHTLTVMTEEQE-DEGVYTCIATNE---VGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYI  128 (197)
T ss_dssp             SEEEEESSSEEEEEEECCSGG-GCEEEEEEEECS---SCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEE
T ss_pred             cEEEEeCCCEEEEEEecCCcc-CCEEEEEEEECC---CCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEe
Confidence            334444556678999999999 999999999974   34445556666654332111 0111334678899999999985


Q ss_pred             CCCCCCeEEEEec
Q psy5866          85 GGSPDPQISVTLQ   97 (98)
Q Consensus        85 ~~~p~~~~~W~~~   97 (98)
                       +.|.|.+.|+++
T Consensus       129 -~~p~p~v~W~~~  140 (197)
T 3lcy_A          129 -GRPVPAMTWFHG  140 (197)
T ss_dssp             -EESCCEEEEEET
T ss_pred             -eeeCCeeEEeEC
Confidence             789999999875

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.39  E-value=6.9e-12  Score=73.86  Aligned_cols=71  Identities=18%  Similarity=0.299  Sum_probs=54.3

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|+|.+++.+ |+|.|+|.+.+..+ ....+..+.|.|..++..|.+..       .+..+.|.|.+. |.|.|.+.|++
T Consensus        62 sL~I~~v~~~-D~G~Y~C~~~n~~g-~~~~~~~~~l~V~~~~~~p~i~~-------~~~~v~L~C~~~-g~p~p~i~W~~  131 (176)
T 1hng_A           62 DLKIKNLTRD-DSGTYNVTVYSTNG-TRILNKALDLRILEMVSKPMIYW-------ECSNATLTCEVL-EGTDVELKLYQ  131 (176)
T ss_dssp             CEEESSCCGG-GCEEEEEEEEETTC-CEEEEEEEEEEEECCCCCCEEEE-------ETTTTEEEEECS-SCSSCEEEEEE
T ss_pred             cEEEcccccc-cCEEEEEEEEeCCC-CEEEEEEEEEEEeCCCCCCEEEe-------cCCcEEEEEEec-CCCCcEEEEEE
Confidence            4999999999 99999999998632 22245667888887766666632       133489999986 67789999997


Q ss_pred             c
Q psy5866          97 Q   97 (98)
Q Consensus        97 ~   97 (98)
                      +
T Consensus       132 ~  132 (176)
T 1hng_A          132 G  132 (176)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.38  E-value=3.4e-12  Score=79.42  Aligned_cols=89  Identities=13%  Similarity=0.124  Sum_probs=60.5

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC-----------------CCEEeCCCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-----------------PPKISPGAN   68 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~-----------------~p~i~~~~~   68 (98)
                      |+.+....+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|..++.                 .+.+...+.
T Consensus        71 R~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~~~--~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (264)
T 2gjj_A           71 RFTGSGSGTDFTLTIGSVKAE-DLAVYYCQQYSNYP--WTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGP  147 (264)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSSS--CEECCCEEEEEECC-------------------CCEEEECCC
T ss_pred             cEEEecCCCEEEEEECCCCHH-HCEEEEEEEecCCc--cEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCC
Confidence            344433456789999999999 99999999987421  1223345778876531                 223332244


Q ss_pred             ceecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      ..+.+|+++.|.|.+.+..+ .+.+.|+++
T Consensus       148 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  177 (264)
T 2gjj_A          148 EVVKTGASVKISCKASGYSFTGYFINWVKK  177 (264)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             EEEcCCCcEEEEEEEeCCccCCeEEEEEEE
Confidence            57899999999999864332 378999986

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.38  E-value=1.9e-12  Score=80.72  Aligned_cols=85  Identities=22%  Similarity=0.263  Sum_probs=57.0

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEEEEEEcCCCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+.............|.|.. ++.+|.+. ..+...+.+|+.+.|.|.+.+..|.
T Consensus        81 ~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~  159 (261)
T 2xqy_G           81 SSSTVYIQLSSLTSE-DSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPE  159 (261)
T ss_dssp             GGTEEEEEECSCCGG-GCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSS
T ss_pred             CCCEEEEEEcCCCcc-cCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCC
Confidence            356789999999999 99999999987421011222345777764 23445442 1123346789999999999755676


Q ss_pred             C-eEEEEec
Q psy5866          90 P-QISVTLQ   97 (98)
Q Consensus        90 ~-~~~W~~~   97 (98)
                      + .+.|+++
T Consensus       160 ~i~v~W~k~  168 (261)
T 2xqy_G          160 PVTLTWNSG  168 (261)
T ss_dssp             CCEEEEGGG
T ss_pred             CCEEEEecC
Confidence            6 9999864

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.38  E-value=1.4e-12  Score=81.48  Aligned_cols=89  Identities=17%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC------------CCEEeCCCCceecC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ------------PPKISPGANPVATE   73 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~------------~p~i~~~~~~~~~~   73 (98)
                      |+.+....+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|..++.            ...+.......+.+
T Consensus        72 r~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~n~~~--~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~  148 (276)
T 3auv_A           72 RFSGSGSGTDFTLTISSLQPE-DFATYYCQQHYTTP--PTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQP  148 (276)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSSS--CCCCCCEEEEC-----------------CCEEEEECCEEECT
T ss_pred             CEEEeccCCeEEEEEccCChh-hCEEEEEEEecCCc--ccccCCEEEEEecCCCccccccccccCcceEEECCCceEecC
Confidence            444444566789999999999 99999999987521  1122235666654432            12332224578999


Q ss_pred             CCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          74 GRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      |+.+.|.|.+.+..| .+.+.|+++
T Consensus       149 G~~v~L~C~~~g~~~~~~~v~W~k~  173 (276)
T 3auv_A          149 GGSLRLSCAASGFTISDYWIHWVRQ  173 (276)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CCeEEEEEEecCccCCCCEEEEEEc
Confidence            999999999864333 589999985

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.38  E-value=2.8e-12  Score=78.11  Aligned_cols=88  Identities=20%  Similarity=0.211  Sum_probs=55.7

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEECCCC-----CeeeEeeEEEEEE-CCCCCCEEe-CCCCceecCCCcEEEEE
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAAGSG-----QDLHSQVYTVTVL-TPPQPPKIS-PGANPVATEGRAIELVC   81 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~-----~~~~~~~~~l~v~-~~~~~p~i~-~~~~~~~~~g~~~~l~C   81 (98)
                      .+...+.++|+|.+++.+ |+|.|.|.+.+....     .........|.|. ..+..|.+. ..+...+..|+.+.|.|
T Consensus        76 ~~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C  154 (232)
T 3qhz_H           76 KDTSKSQVVLTMTNMDPV-DTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC  154 (232)
T ss_dssp             EETTTTEEEEEECSCCGG-GCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEE
T ss_pred             eccCCCEEEEEECcCChh-hCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEE
Confidence            344568899999999999 999999999864110     0223344567776 344556553 22344566799999999


Q ss_pred             EcCCCCC-CCeEEEEec
Q psy5866          82 STSGGSP-DPQISVTLQ   97 (98)
Q Consensus        82 ~~~~~~p-~~~~~W~~~   97 (98)
                      .+.++.| ...+.|+++
T Consensus       155 ~~~~~~P~~~~v~W~~~  171 (232)
T 3qhz_H          155 LVKDYFPEPVTVSWNSG  171 (232)
T ss_dssp             EEEEEBSSCCEEEEGGG
T ss_pred             EEeeEeCCCeEEEEEEC
Confidence            9976566 346889764

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.38  E-value=4e-12  Score=77.70  Aligned_cols=85  Identities=18%  Similarity=0.283  Sum_probs=55.3

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCC-C--CeeeEeeEEEEEEC-CCCCCEEeC-CCCceecCC-CcEEEEEEcC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGS-G--QDLHSQVYTVTVLT-PPQPPKISP-GANPVATEG-RAIELVCSTS   84 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~-~--~~~~~~~~~l~v~~-~~~~p~i~~-~~~~~~~~g-~~~~l~C~~~   84 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+.+. +  .........|.|.. ++.+|.+.. .+...+.+| +.+.|.|.+.
T Consensus        73 ~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~  151 (232)
T 1dn0_B           73 TSKNQFSLKLSSVTAA-DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQ  151 (232)
T ss_dssp             TTTTEEEEEECSCCGG-GCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEE
T ss_pred             CCCCEEEEEECCCCcc-cCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEE
Confidence            3567889999999999 99999999984211 0  11222345788875 344555521 122345578 8999999998


Q ss_pred             CCCCCC-eEEEEe
Q psy5866          85 GGSPDP-QISVTL   96 (98)
Q Consensus        85 ~~~p~~-~~~W~~   96 (98)
                      +..|.+ .+.|++
T Consensus       152 g~~P~p~~v~W~~  164 (232)
T 1dn0_B          152 DFLPDSITFSWKY  164 (232)
T ss_dssp             EEBSSCCEEEEEE
T ss_pred             EEeCCCeEEEEEc
Confidence            666876 999998

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.38  E-value=7.3e-12  Score=74.51  Aligned_cols=71  Identities=15%  Similarity=0.324  Sum_probs=53.9

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|+|.+++.+ |+|.|+|.+.+..+ .......+.|.|+.+...|.+..       .+..+.|+|.+. +.|.+++.|++
T Consensus        67 sL~I~~v~~~-DsG~Y~c~~~n~~g-~~~~~~~~~L~V~~~~~~P~i~~-------~~~~v~L~C~~~-~~p~~~~~W~~  136 (182)
T 1hnf_A           67 TLKIKHLKTD-DQDIYKVSIYDTKG-KNVLEKIFDLKIQERVSKPKISW-------TCINTTLTCEVM-NGTDPELNLYQ  136 (182)
T ss_dssp             CEEECSCCGG-GCEEEEEEEEETTS-CEEEEEEEEEEEECCCCCCEEEE-------ETTTTEEEEECS-SCSSCEEEEEE
T ss_pred             CEEECCCChh-hCEEEEEEEEeCCC-ceeEEEEEEEEEcCcCCCCEEEE-------ccCcEEEEeEcc-CCCCCEEEEEE
Confidence            7999999999 99999999998532 23334567888887766676632       123589999986 56789999997


Q ss_pred             c
Q psy5866          97 Q   97 (98)
Q Consensus        97 ~   97 (98)
                      +
T Consensus       137 ~  137 (182)
T 1hnf_A          137 D  137 (182)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.38  E-value=1.1e-11  Score=76.54  Aligned_cols=85  Identities=18%  Similarity=0.249  Sum_probs=59.0

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCC-eeeEeeEEEEEEC-----------------CCCCCEE-eCCCCce
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQ-DLHSQVYTVTVLT-----------------PPQPPKI-SPGANPV   70 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~-~~~~~~~~l~v~~-----------------~~~~p~i-~~~~~~~   70 (98)
                      +...+.++|+|.+++.+ |+|.|+|.+.+..... ........|.|..                 .+.+|.+ .......
T Consensus        70 ~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~  148 (256)
T 3tf7_C           70 SKSDSSFHLRKASVHRS-DSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKV  148 (256)
T ss_dssp             ETTTTEEEEEESSCCGG-GCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEE
T ss_pred             cCCCCEEEEEECCCCcc-cCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEE
Confidence            55677889999999999 9999999998853211 2233345677764                 1223333 3324456


Q ss_pred             ecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +.+|+.++|.|.+.. . .+.+.|+++
T Consensus       149 v~~G~~v~L~C~~~~-~-~~~v~W~k~  173 (256)
T 3tf7_C          149 TVTGENVTLSCRQTN-S-HNYMYWYRQ  173 (256)
T ss_dssp             EETTCCEEECEEECS-C-CSEEEEEEE
T ss_pred             EeCCCcEEEEEEcCC-C-ceEEEEEEE
Confidence            779999999999864 4 678999984

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.37  E-value=5.7e-12  Score=77.31  Aligned_cols=84  Identities=17%  Similarity=0.135  Sum_probs=57.7

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCC----eeeEeeEEEEEECCCC------CCEEeCCCCceecCCCcEEEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQ----DLHSQVYTVTVLTPPQ------PPKISPGANPVATEGRAIELVCS   82 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~----~~~~~~~~l~v~~~~~------~p~i~~~~~~~~~~g~~~~l~C~   82 (98)
                      .+.++|+|.+++.+ |+|.|.|.+.+...+.    ........|.|...+.      .+.+.......+.+|+.+.|.|.
T Consensus        77 ~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~  155 (242)
T 1hxm_B           77 TSTSTLTIHNVEKQ-DIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCL  155 (242)
T ss_dssp             TTEEEEEECSCCGG-GCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEE
T ss_pred             CcEEEEEECCCCcc-cCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEE
Confidence            36889999999999 9999999998742101    1122346788875321      22332222345667999999999


Q ss_pred             cCCCCCC-CeEEEEec
Q psy5866          83 TSGGSPD-PQISVTLQ   97 (98)
Q Consensus        83 ~~~~~p~-~~~~W~~~   97 (98)
                      +.+..|. +.+.|+++
T Consensus       156 ~~g~~P~~~~v~W~~~  171 (242)
T 1hxm_B          156 LEKFFPDVIKIHWEEK  171 (242)
T ss_dssp             EEEESSCCEEEEEEES
T ss_pred             EeeEECCCeEEEEEcC
Confidence            9755575 79999975

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.37  E-value=7.3e-12  Score=84.62  Aligned_cols=80  Identities=19%  Similarity=0.288  Sum_probs=62.1

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+..   ...+..+.|.|..+|..  ........+.+|+.+.|.|.+.++.|.+.
T Consensus        71 ~~g~~~L~I~~v~~~-D~G~Y~C~~~n~~---~~~~~~~~l~V~~~p~~--~~~~~~~~v~~G~~v~l~C~~~~~~~~~~  144 (585)
T 2ocw_A           71 ENGTFVVNIAQLSQD-DSGRYKCGLGINS---RGLSFDVSLEVSQGPGL--LNDTKVYTVDLGRTVTINCPFKTENAQKR  144 (585)
T ss_pred             CCCEEEEEECCCCcc-cCEEEEEEcccCC---CCceEEEEEEEecCccc--cCCCccEEEEcCCCEEEEEEecCCCCCcc
Confidence            567789999999999 9999999998753   23455678888766543  22234567899999999999976666788


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       145 v~W~k~  150 (585)
T 2ocw_A          145 KSLYKQ  150 (585)
T ss_pred             EEEEEC
Confidence            999975

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.37  E-value=8.7e-12  Score=74.72  Aligned_cols=82  Identities=23%  Similarity=0.314  Sum_probs=61.7

Q ss_pred             CCCeEEEEEcccee-eccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC----CCEE-eCCCCceecCCCcEEEEEEcCC
Q psy5866          12 DSGRYDLIISNASF-ERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ----PPKI-SPGANPVATEGRAIELVCSTSG   85 (98)
Q Consensus        12 ~~~~~~l~I~~v~~-~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~----~p~i-~~~~~~~~~~g~~~~l~C~~~~   85 (98)
                      ..+...|.|.+++. . |+|.|+|.+.+..+  ...+..+.|.|..++.    .|.+ .......+.+|+.+.|.|.+. 
T Consensus        60 ~~~~~~L~i~~v~~~~-d~G~Y~C~~~n~~g--~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~-  135 (212)
T 2yd1_A           60 PGGISILRIEPVRAGR-DDAPYECVAENGVG--DAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAI-  135 (212)
T ss_dssp             TTTEEEEEESSCCTTT-TCSEEEEEEECSSS--CEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEE-
T ss_pred             CCCeEEEEEEecCCCC-cCceEEEEEEeCCC--CeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEec-
Confidence            35557899999999 9 99999999988522  2256667888875432    2444 222446788899999999985 


Q ss_pred             CCCCCeEEEEec
Q psy5866          86 GSPDPQISVTLQ   97 (98)
Q Consensus        86 ~~p~~~~~W~~~   97 (98)
                      +.|.+.+.|+++
T Consensus       136 g~p~p~i~W~~~  147 (212)
T 2yd1_A          136 GNPTPNIYWIKN  147 (212)
T ss_dssp             CSSCCEEEEEET
T ss_pred             cCCCCeEEEEEC
Confidence            789999999975

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.37  E-value=2.2e-12  Score=78.73  Aligned_cols=85  Identities=21%  Similarity=0.292  Sum_probs=58.5

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC---CCCCCEE--eCCCCceecCCCcEEEEEEcCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT---PPQPPKI--SPGANPVATEGRAIELVCSTSGG   86 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~   86 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+...............+.|..   .+.+|.+  .......+.+|+.+.|.|.+.++
T Consensus        71 ~~~~~sL~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~  149 (240)
T 3q5y_A           71 DDYHSEMNMSALELE-DSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGF  149 (240)
T ss_dssp             TTSCEEEEECSCCGG-GCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE
T ss_pred             CCCEEEEEECcCChh-HCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeE
Confidence            456789999999999 99999999984222123334445677764   2344544  22223356678999999999765


Q ss_pred             CCCC-eEEEEec
Q psy5866          87 SPDP-QISVTLQ   97 (98)
Q Consensus        87 ~p~~-~~~W~~~   97 (98)
                      .|.+ .+.|+++
T Consensus       150 ~P~~~~v~W~~~  161 (240)
T 3q5y_A          150 FPDHVELSWWVN  161 (240)
T ss_dssp             BSSCEEEEEEET
T ss_pred             ECCCeEEEEEEC
Confidence            7766 7999875

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.37  E-value=4.5e-12  Score=75.30  Aligned_cols=81  Identities=15%  Similarity=0.334  Sum_probs=60.7

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      ....+|.|.+++.+ |+|.|+|.+.+..+ ....+..+.|.|...+.+|.+...+...+.+|+.++|.|.+. + +.+.+
T Consensus        55 ~~~~~L~i~~v~~~-D~G~Y~C~a~n~~g-~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~-~-~~~~~  130 (196)
T 3p2t_A           55 KNKARFSIPSMTED-YAGRYRCYYRSPVG-WSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSR-S-PMDTF  130 (196)
T ss_dssp             SSEEEEEESSCCGG-GCEEEEEEEEETTE-EBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEE-E-EEEEE
T ss_pred             CceEEEEeccCCcc-cCceEEEEEeCCCc-ccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecC-C-CCCEE
Confidence            45678999999999 99999999998521 123455677888766666766433445788999999999985 3 45689


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       131 ~w~k~  135 (196)
T 3p2t_A          131 LLCKE  135 (196)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            99875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.37  E-value=1.6e-12  Score=77.51  Aligned_cols=87  Identities=18%  Similarity=0.263  Sum_probs=60.0

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC------------------CCCCCEEeC-C
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT------------------PPQPPKISP-G   66 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~------------------~~~~p~i~~-~   66 (98)
                      ++......+...|+|.+++.+ |+|.|+|.+.+.   .......+.+.|..                  .+.++.+.. .
T Consensus        49 ~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~~~n~---~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  124 (212)
T 2r15_A           49 RVKTGVTGEQIWLQINEPTPN-DKGKYVMELFDG---KTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP  124 (212)
T ss_dssp             SEEEEEETTEEEEEEESCCGG-GCEEEEEEEECS---SCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCC
T ss_pred             eEEEEEeCCEEEEEECCCCcc-cCEEEEEEEecC---CcceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCC
Confidence            344444455677999999999 999999999984   33444444444321                  112233322 2


Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus       125 ~~~~v~~g~~~~l~C~~~-g~p~p~v~W~~~  154 (212)
T 2r15_A          125 DVVTIQEGKALNLTCNVW-GDPPPEVSWLKN  154 (212)
T ss_dssp             SEEEEETTCCEEEEEEEE-CSSCCEEEEEET
T ss_pred             CcEEEccCCeEEEEEEEc-CCCCceEEEEEC
Confidence            345788999999999986 789999999975

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.36  E-value=2.3e-12  Score=77.84  Aligned_cols=85  Identities=15%  Similarity=0.199  Sum_probs=58.7

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE-CCCCCCEEe-CCCCceecCCCcEEEEEEcCCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL-TPPQPPKIS-PGANPVATEGRAIELVCSTSGGS   87 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~-~~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~   87 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+... .........|.|. .++..|.+. ..+... .+|+.+.|.|.+.++.
T Consensus        75 ~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~~-~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~  151 (221)
T 3m8o_H           75 DDSKNTAFLQMNSLKSD-DTAMYYCVIRGDVY-NRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFF  151 (221)
T ss_dssp             EGGGTEEEEEECSCCGG-GCEEEEEEEESCTT-CCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEB
T ss_pred             cCCCCEEEEEECCCCHH-HCEEEEEEEECCCh-hheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeE
Confidence            34467889999999999 99999999987421 0223334567776 334455553 112223 7899999999997657


Q ss_pred             CC--CeEEEEec
Q psy5866          88 PD--PQISVTLQ   97 (98)
Q Consensus        88 p~--~~~~W~~~   97 (98)
                      |.  +.+.|+++
T Consensus       152 P~~~~~v~W~~~  163 (221)
T 3m8o_H          152 PQEPLSVTWSES  163 (221)
T ss_dssp             SSCSEEEEESCC
T ss_pred             CCCCEEEEEEEC
Confidence            76  48999864

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.36  E-value=2.4e-12  Score=76.04  Aligned_cols=81  Identities=22%  Similarity=0.304  Sum_probs=59.7

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC--C-EEeCCCCceecCCCcEEEEEEcCCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP--P-KISPGANPVATEGRAIELVCSTSGGSP   88 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~--p-~i~~~~~~~~~~g~~~~l~C~~~~~~p   88 (98)
                      ..+...|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..+|..  | .+.......+.+|+.+.|.|.+. +.|
T Consensus        58 ~~~~~~L~i~~~~~~-d~G~Y~C~~~n~---~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-g~p  132 (197)
T 2j8h_A           58 KGGYHQLIIASVTDD-DATVYQVRATNQ---GGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS-GKP  132 (197)
T ss_dssp             TTTEEEEEECSCCGG-GCSEEEEEEEET---TEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEE-EES
T ss_pred             CCCEEEEEECcCCHH-hCEEEEEEEEEC---CCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEE-ecC
Confidence            456678999999999 999999999985   344566677777643321  1 11111234678899999999986 789


Q ss_pred             CCeEEEEec
Q psy5866          89 DPQISVTLQ   97 (98)
Q Consensus        89 ~~~~~W~~~   97 (98)
                      .|.+.|+++
T Consensus       133 ~p~i~W~~~  141 (197)
T 2j8h_A          133 DPVITWQKG  141 (197)
T ss_dssp             CCEEEEEES
T ss_pred             CCcEEEEEC
Confidence            999999975

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.36  E-value=9.9e-13  Score=80.94  Aligned_cols=89  Identities=13%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEEEEcC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELVCSTS   84 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~C~~~   84 (98)
                      |+......+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|.....+|.+.. .....+.+|+.+.|.|.+.
T Consensus        99 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~--~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~  175 (252)
T 3bkj_L           99 RFSGSGSGTDFTLRISRVEAE-DLGVYYCFQASLVP--LTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLN  175 (252)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSBSS--CEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEE
T ss_pred             ceEEEccCCEEEEEECCCCcc-cCEEEEEEEEcCCc--cEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEe
Confidence            344444456779999999999 99999999987421  1222335677765444555521 1233445788999999997


Q ss_pred             CCCCCC-eEEEEec
Q psy5866          85 GGSPDP-QISVTLQ   97 (98)
Q Consensus        85 ~~~p~~-~~~W~~~   97 (98)
                      ++.|.+ .+.|+++
T Consensus       176 g~~p~~~~v~W~k~  189 (252)
T 3bkj_L          176 NFYPKDINVKWKID  189 (252)
T ss_dssp             EEBSSCCEEEEEET
T ss_pred             eEeCCCcEEEEEEC
Confidence            556654 7999975

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.36  E-value=5e-12  Score=74.64  Aligned_cols=79  Identities=18%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      ...|.|.+++.+ |+|.|+|.+.+..+ ....+..+.|.|.....+|.+...+...+.+|+.+.|.|.+. +. .+.+.|
T Consensus        51 ~~~L~i~~v~~~-D~G~Y~C~a~n~~g-~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~-~~-~~~~~w  126 (184)
T 2gi7_A           51 QAVLFIPAMKRS-LAGRYRCSYQNGSL-WSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTR-YG-FDQFAL  126 (184)
T ss_dssp             SSEEEESSCCGG-GCEEEEEEEEETTE-EBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECS-SC-CCEEEE
T ss_pred             ccEEEECcCChh-hCceEEEEEEcCCC-ccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcC-CC-CcEEEE
Confidence            457999999999 99999999998421 112344567777665556666332456788999999999975 43 469999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       127 ~k~  129 (184)
T 2gi7_A          127 YKE  129 (184)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            975

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.36  E-value=7e-12  Score=75.70  Aligned_cols=84  Identities=15%  Similarity=0.217  Sum_probs=56.2

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC------------------CCCCCEEeCCCC
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT------------------PPQPPKISPGAN   68 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~------------------~~~~p~i~~~~~   68 (98)
                      +..+...+..+|.|.+++.+ |+|.|+|.+.|.   ...  ....+.+..                  ...+|.+.....
T Consensus        52 ~~~~~~~g~~~L~I~~v~~~-D~G~Y~C~a~Ng---~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~  125 (207)
T 3rbs_A           52 MHIDRNTGIIEMFMEKLQDE-DEGTYTFQLQDG---KAT--NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS  125 (207)
T ss_dssp             EEECTTTCEEEEEESCCCGG-GCEEEEEEEEET---TEE--EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEE
T ss_pred             EEEeCCCCEEEEEECCCChh-hCEEEEEEEECC---CeE--EEEEEEEEccchhhhcccccccccccccCCCCceEecCC
Confidence            34444457788999999999 999999999982   222  222222110                  001343321123


Q ss_pred             ceecCCCcEEEEEEcCCCC-CCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGS-PDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~   97 (98)
                      ..+.+|+.+.|.|.+. |. |.|.+.|+++
T Consensus       126 ~~v~~g~~v~l~C~v~-g~~P~p~i~W~k~  154 (207)
T 3rbs_A          126 WEVTGECNVLLKCKVA-NIKKETHIVWYKD  154 (207)
T ss_dssp             EEEETTTEEEEEEEEE-SCCTTCEEEEEET
T ss_pred             cEEcCCCcEEEEEEEe-CCCCCCEEEEEEC
Confidence            5788999999999986 56 8999999985

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.35  E-value=6.2e-13  Score=80.66  Aligned_cols=91  Identities=18%  Similarity=0.194  Sum_probs=57.9

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC-CCCEEeC-CCCceecCCCcEEEEEEc
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP-QPPKISP-GANPVATEGRAIELVCST   83 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~-~~p~i~~-~~~~~~~~g~~~~l~C~~   83 (98)
                      |+......+.++|+|.+++.+ |+|.|+|.+.+.............|.|...+ .+|.+.. .......+|+.+.|.|.+
T Consensus        81 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~  159 (234)
T 2j6e_L           81 RFSGSKSGTSASLAISGLRSE-DEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLI  159 (234)
T ss_dssp             TEEEEEETTEEEEEEESCCST-TCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECC
T ss_pred             cEEEEecCCeEEEEECCCCHH-HCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEE
Confidence            344333456779999999999 9999999999863210122223456663322 2333311 122344568899999999


Q ss_pred             CCCCCC-CeEEEEec
Q psy5866          84 SGGSPD-PQISVTLQ   97 (98)
Q Consensus        84 ~~~~p~-~~~~W~~~   97 (98)
                      .++.|+ +.+.|+++
T Consensus       160 ~g~~p~~~~v~W~k~  174 (234)
T 2j6e_L          160 SDFFPGAVTVAWKAD  174 (234)
T ss_dssp             CBCSSCCCEEEEEET
T ss_pred             EEEcCCceEEEEEEC
Confidence            755565 48999975

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.34  E-value=5.2e-12  Score=74.22  Aligned_cols=69  Identities=19%  Similarity=0.208  Sum_probs=52.6

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      +.+|+|.+++.+ |+|.|+|.+.+..   .  ...+.|.|+.++..|.+......       ..|.|.+. +.|.|.+.|
T Consensus        59 ~~sL~I~~v~~~-DsG~Y~C~~~n~~---~--~~~~~L~V~~~~~~p~i~~~~~~-------~~L~C~~~-~~p~p~i~W  124 (171)
T 1ccz_A           59 SGSLTIYNLTSS-DEDEYEMESPNIT---D--TMKFFLYVLEMVSKPMIYWECSN-------ATLTCEVL-EGTDVELKL  124 (171)
T ss_dssp             TCCEEECSCCGG-GCEEEEEECTTCC---S--CEEEEEEEECCCCCCEEEEETTT-------TEEEEECS-SCSSCEEEE
T ss_pred             CCeEEECCCChh-hCceEEEEEeCCC---C--cEEEEEEEECcCCCCEEEEecCC-------cEEEEEeC-CCCCcEEEE
Confidence            347999999999 9999999997642   2  56678899888777776321111       27999986 568899999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       125 ~~~  127 (171)
T 1ccz_A          125 YQG  127 (171)
T ss_dssp             EET
T ss_pred             EEC
Confidence            975

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.34  E-value=1.3e-11  Score=82.55  Aligned_cols=92  Identities=17%  Similarity=0.177  Sum_probs=62.0

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC-CCCCEEe-CCCCceecCCCcEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP-PQPPKIS-PGANPVATEGRAIELVCS   82 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~-~~~p~i~-~~~~~~~~~g~~~~l~C~   82 (98)
                      .|+......+.++|+|.+++.+ |+|.|+|.+.+..+........+.|.|... ..+|.+. ......+.+|+.+.|.|.
T Consensus        59 ~r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~  137 (523)
T 2rcj_C           59 TRFSGSKSGTSASLAISGLEAE-DESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCL  137 (523)
T ss_pred             CcEEEecCCCEEEEEECCCChh-hCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEE
Confidence            3555555567789999999999 999999999985322212334467777533 2334431 123345678999999999


Q ss_pred             cCCCCCC-CeEEEEec
Q psy5866          83 TSGGSPD-PQISVTLQ   97 (98)
Q Consensus        83 ~~~~~p~-~~~~W~~~   97 (98)
                      +.+..|+ +.+.|+++
T Consensus       138 ~~g~~p~~~~v~W~k~  153 (523)
T 2rcj_C          138 ISDFYPGAVTVAWKAD  153 (523)
T ss_pred             eccccCCceEEEEecC
Confidence            9754443 48999975

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.33  E-value=2.8e-12  Score=79.50  Aligned_cols=90  Identities=20%  Similarity=0.247  Sum_probs=60.5

Q ss_pred             EEEEeC-CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC---CCCCCEE--eCCCCceecCCCcEEE
Q psy5866           6 IIDYRP-DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT---PPQPPKI--SPGANPVATEGRAIEL   79 (98)
Q Consensus         6 ~~~~~~-~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~~~~p~i--~~~~~~~~~~g~~~~l   79 (98)
                      |+.+.. ..++++|+|.+++.+ |+|.|+|.+.+... .........|.|..   .+.+|.+  .......+.+|+.+.|
T Consensus        89 R~~~~~~~~~~~sL~I~~v~~~-D~G~Y~C~~~~~~~-~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L  166 (268)
T 3pl6_D           89 RFFAVRPEGSVSTLKIQRTERG-DSAVYLCATSALGD-TQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATL  166 (268)
T ss_dssp             TEEEECTTSSSEEEEECSCCGG-GCEEEEEEEESSSS-SCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEE
T ss_pred             cEEEEecCCCEEEEEECCCCcc-cCEEEEEEEecCCC-ceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEE
Confidence            444332 456789999999999 99999999986311 23334445677765   2234443  2223345667999999


Q ss_pred             EEEcCCCCCCC-eEEEEec
Q psy5866          80 VCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        80 ~C~~~~~~p~~-~~~W~~~   97 (98)
                      .|.+.+..|++ .+.|+++
T Consensus       167 ~C~~~g~~p~~~~v~W~~~  185 (268)
T 3pl6_D          167 VCLATGFYPDHVELSWWVN  185 (268)
T ss_dssp             EEEEEEEBSSCEEEEEEES
T ss_pred             EEEECcccCCCeEEEEEEC
Confidence            99997555555 8999975

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.33  E-value=5.3e-12  Score=77.24  Aligned_cols=84  Identities=20%  Similarity=0.318  Sum_probs=57.8

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCC--CeeeEeeEEEEEECC---CCCCEE--eCCCCceecCCCcEEEEEEcCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSG--QDLHSQVYTVTVLTP---PQPPKI--SPGANPVATEGRAIELVCSTSG   85 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~~---~~~p~i--~~~~~~~~~~g~~~~l~C~~~~   85 (98)
                      .+.++|+|.+++.+ |+|.|+|.+.+..+.  .........|.|...   +.+|.+  .......+.+|+.+.|.|.+.+
T Consensus        69 ~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g  147 (238)
T 1bec_A           69 QEQFSLILELATPS-QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARG  147 (238)
T ss_dssp             SSEEEEEESSCCGG-GCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEE
T ss_pred             CCEEEEEEecCCcc-cCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEee
Confidence            56789999999999 999999999874210  112223356777653   234544  2223345668999999999975


Q ss_pred             CCCCC-eEEEEec
Q psy5866          86 GSPDP-QISVTLQ   97 (98)
Q Consensus        86 ~~p~~-~~~W~~~   97 (98)
                      ..|.+ .+.|+++
T Consensus       148 ~~P~~~~v~W~~~  160 (238)
T 1bec_A          148 FFPDHVELSWWVN  160 (238)
T ss_dssp             EBSCCEEEEEEET
T ss_pred             EeCCCcEEEEEEC
Confidence            55754 8999975

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.33  E-value=2.9e-12  Score=78.68  Aligned_cols=89  Identities=13%  Similarity=0.136  Sum_probs=58.9

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEEEEcC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELVCSTS   84 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~C~~~   84 (98)
                      |+......+.++|+|.+++.+ |+|.|+|.+.+...  ........+.|.....+|.+.. .......+|..+.|.|.+.
T Consensus       103 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~~~--~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~  179 (254)
T 2c1o_A          103 RFTGSGSGTDFTLKISRVEAE-DLGIYYCVQGSHFP--PTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLN  179 (254)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCSEEEEEECSSSS--CEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEE
T ss_pred             eEEEecCCCEEEEEECcCCcc-cCEEEEEEEEcCcc--eEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEe
Confidence            344333456779999999999 99999999987421  1222234667765444555521 1233345678999999997


Q ss_pred             CCCCC-CeEEEEec
Q psy5866          85 GGSPD-PQISVTLQ   97 (98)
Q Consensus        85 ~~~p~-~~~~W~~~   97 (98)
                      +..|+ +.+.|+++
T Consensus       180 g~~p~~~~v~W~k~  193 (254)
T 2c1o_A          180 NFYPKDINVKWKID  193 (254)
T ss_dssp             EEBSSCCEEEEEES
T ss_pred             cccCCCcEEEEEEC
Confidence            54555 57999975

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.33  E-value=9.7e-12  Score=78.59  Aligned_cols=83  Identities=18%  Similarity=0.281  Sum_probs=61.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCC---CcEEEEEEcCCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEG---RAIELVCSTSGGSP   88 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g---~~~~l~C~~~~~~p   88 (98)
                      ..++.+|.|.+++.+ |+|.|+|.+.+..  ....+..+.|.|..+|............+.+|   +.+.|.|.+..+.|
T Consensus        88 ~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~--~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p  164 (331)
T 3u83_A           88 SFTDGTIRLSRLELE-DEGVYICEFATFP--TGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKP  164 (331)
T ss_dssp             SSSBCCEEECSCCGG-GCEEEEEEEEEET--TEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBS
T ss_pred             CCCCceEEEcccCcc-cCcEEEEEEEecC--CCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcC
Confidence            345667999999999 9999999965431  34566677888887665433333355677888   77999998446889


Q ss_pred             CCeEEEEec
Q psy5866          89 DPQISVTLQ   97 (98)
Q Consensus        89 ~~~~~W~~~   97 (98)
                      .+.+.|+++
T Consensus       165 ~~~i~W~~~  173 (331)
T 3u83_A          165 PSVVSWETR  173 (331)
T ss_dssp             CCEEEEEES
T ss_pred             CceEEEEcC
Confidence            999999973

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.33  E-value=6.2e-12  Score=81.56  Aligned_cols=76  Identities=18%  Similarity=0.234  Sum_probs=59.9

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      ...|.|.+++.+ |+|.|+|.+.|.   .+.......|.|..+|.  .+.......+.+|+.+.|.|.+. |.|.|.+.|
T Consensus       257 ~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~v~~~P~--~~~~~~~~~v~~g~~v~l~C~~~-g~P~p~i~W  329 (384)
T 3kld_A          257 NGILEIPNFQQE-DAGSYECVAENS---RGKNVAKGQLTFYAQPN--WVQIINDIHVAMEESVFWECKAN-GRPKPTYRW  329 (384)
T ss_dssp             SCEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEEEEE--EEECCCCEEECTTCCEEEECEEE-EESCCEEEE
T ss_pred             CcEEEECCCChh-hCEEEEEEEEcC---CCeEEEEEEEEEecCCc--cccCCCceEecCCCCEEEEeECC-ccCCCeEEE
Confidence            346999999999 999999999995   45556667787765443  22223457889999999999985 789999999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       330 ~k~  332 (384)
T 3kld_A          330 LKN  332 (384)
T ss_dssp             EET
T ss_pred             EEC
Confidence            975

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.32  E-value=2.6e-12  Score=80.03  Aligned_cols=86  Identities=22%  Similarity=0.254  Sum_probs=51.8

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCC---------C-eeeEeeEEEEEEC-CCCCCEEeC-CCCceecCCCcEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSG---------Q-DLHSQVYTVTVLT-PPQPPKISP-GANPVATEGRAIE   78 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~---------~-~~~~~~~~l~v~~-~~~~p~i~~-~~~~~~~~g~~~~   78 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+..+.         . ........|.|.. ++.+|.+.. .+...+.+|..+.
T Consensus        74 ~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~  152 (257)
T 3bn9_D           74 NSKNTLYLQMSSLRAE-DTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAA  152 (257)
T ss_dssp             TTTTEEEEEEESCCGG-GCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------
T ss_pred             CCCCEEEEEECCCChh-hCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEE
Confidence            3467889999999999 999999999874210         0 0222335777765 334566532 1223467899999


Q ss_pred             EEEEcCCCCCCC-eEEEEec
Q psy5866          79 LVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        79 l~C~~~~~~p~~-~~~W~~~   97 (98)
                      |.|.+.+..|.+ .+.|+++
T Consensus       153 L~C~~~g~~P~pi~v~W~k~  172 (257)
T 3bn9_D          153 LGCLVKDYFPEPVTVSWNSG  172 (257)
T ss_dssp             CCCEEEEEBSSCCEEEETTT
T ss_pred             EEEEEeeEECCCcEEEEeeC
Confidence            999998656777 9999864

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.32  E-value=4.4e-11  Score=81.16  Aligned_cols=80  Identities=15%  Similarity=0.202  Sum_probs=62.4

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEe-CCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS-PGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      .+..+|.|.++..+ |+|.|+|.+.+.   .........+.|.....+|.+. ......+.+|+.+.|.|.+. |.|.+.
T Consensus       154 ~~~~~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~-g~p~p~  228 (570)
T 3b43_A          154 HNVATLQILQTDQS-HVGQYNCSASNP---LGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVT-GTAPIK  228 (570)
T ss_dssp             TTEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEE-SSSCCE
T ss_pred             CCEEEEEECcCChH-HCEEEEEEEEeC---CcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEE-ECCCCE
Confidence            34578999999999 999999999985   4455556677776555556552 22456788999999999986 788899


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       229 i~W~k~  234 (570)
T 3b43_A          229 ITWAKD  234 (570)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999975

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.32  E-value=1.1e-11  Score=83.96  Aligned_cols=77  Identities=25%  Similarity=0.399  Sum_probs=59.6

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcE-EEEEEcCCCCCCCeEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAI-ELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~-~l~C~~~~~~p~~~~~W~   95 (98)
                      +|.|.+++.+ |+|.|+|.+.+..+  ......+.|.|..+|..|.+.... ..+.++... .|+|.+.++.|.|.++|+
T Consensus       433 ~L~i~~v~~~-D~G~Y~C~~~n~~~--~~~~~~~~l~V~~~~~~p~i~~~~-~~~~~~~~~~~l~C~~~~~~P~~~i~W~  508 (581)
T 3o3u_N          433 SLFLPAVGIQ-DEGIFRCQAMNRNG--KETKSNYRVRVYQIPGKPEIVDSA-SELTAGVPNKVGTCVSEGSYPAGTLSWH  508 (581)
T ss_dssp             CEEESSCCGG-GCEEEEEEEECTTS--CEEEEEEEEEEEBCCCCCEEESCC-SEECTTSCEEEEEEEEEEEBSCCEEEEE
T ss_pred             eEEEeccccc-cCeEEEEEEEcCCC--ceeEEEEEEEEEcCCCCCEEEcCC-cccccCCceeEEEEECCCCCCCCeEEEE
Confidence            6999999999 99999999998532  223556889998888888886533 345566554 679999765799999999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       509 ~~  510 (581)
T 3o3u_N          509 LD  510 (581)
T ss_dssp             ET
T ss_pred             EC
Confidence            75

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.31  E-value=1.5e-11  Score=79.24  Aligned_cols=84  Identities=19%  Similarity=0.380  Sum_probs=62.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCC-ceecCCCcEEEEEEcC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGAN-PVATEGRAIELVCSTS   84 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~-~~~~~g~~~~l~C~~~   84 (98)
                      ++.+....+..+|.|.+++.+ |+|.|+|.+.+.   .+..+..+.|.|..+|   .+..... ..+.+|+.+.|.|.+.
T Consensus        53 ~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~~P---~~~~~~~~~~~~~g~~~~l~C~~~  125 (389)
T 2jll_A           53 RIEVKGQHGSSSLHIKDVKLS-DSGRYDCEAASR---IGGHQKSMYLDIEYAP---KFISNQTIYYSWEGNPINISCDVK  125 (389)
T ss_dssp             SEEEEECSSEEEEEEESCCGG-GCEEEEEEEECS---SCEEEEEEEEEEEEEE---EECCSCCEEEECTTCCEEEEECEE
T ss_pred             eEEEeccCCcceEEEcccChh-hCEEEEEEEEeC---CCCcceEEEEEEEeCC---EEecCcceEEeccCCEEEEEEEEE
Confidence            344444456778999999999 999999999985   3445667788887443   3422222 3578999999999985


Q ss_pred             CCCCCCeEEEEec
Q psy5866          85 GGSPDPQISVTLQ   97 (98)
Q Consensus        85 ~~~p~~~~~W~~~   97 (98)
                       |.|.+.+.|+++
T Consensus       126 -g~p~~~i~W~~~  137 (389)
T 2jll_A          126 -SNPPASIHWRRD  137 (389)
T ss_dssp             -EESCCEEEEEET
T ss_pred             -ecCCCeEEEEEC
Confidence             788999999875

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.31  E-value=6.2e-12  Score=78.11  Aligned_cols=89  Identities=17%  Similarity=0.170  Sum_probs=56.7

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC------CC---------------EEe
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ------PP---------------KIS   64 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~------~p---------------~i~   64 (98)
                      |+.+....+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|..++.      +|               .+.
T Consensus        80 r~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~~~--~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~  156 (268)
T 1x9q_A           80 RFSGSGSGTDFTLKINRVEAE-DLGVYFCSQSTHVP--WTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLD  156 (268)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSSS--CEECCCEEEC------------------------CGGGCEEE
T ss_pred             cEEEEcCCCEEEEEECCCChh-HCEEEEEEEecCCC--ceEcCCEEEEEccCccCCCccccccccccccccccccceEEE
Confidence            444444456789999999999 99999999987421  1122335666654321      11               232


Q ss_pred             CCCCceecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          65 PGANPVATEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        65 ~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      ......+.+|+.+.|+|.+.+..+ .+.+.|+++
T Consensus       157 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  190 (268)
T 1x9q_A          157 ETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQ  190 (268)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGCEEEEEEE
T ss_pred             CCCceEecCCCcEEEEEEecCccccccEEEEEEe
Confidence            223568899999999999864333 378999985

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.31  E-value=3.6e-11  Score=72.96  Aligned_cols=77  Identities=23%  Similarity=0.426  Sum_probs=59.3

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC-CCCEEe--CCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP-QPPKIS--PGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~-~~p~i~--~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      ..+|.|.+++.. |+|.|+|.+.+.   .......+.|.|...+ ..|.+.  ......+.+|+.+.|.|.+. +.|.+.
T Consensus        71 ~~~L~i~~v~~~-d~G~Y~C~~~~~---~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~-~~p~p~  145 (241)
T 3grw_A           71 QWSLVMESVVPS-DRGNYTCVVENK---FGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY-SDAQPH  145 (241)
T ss_dssp             GTEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEE-CSSCCE
T ss_pred             ceEEEEEeCCcc-cCEEEEEEEeec---CCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEe-cCCCCE
Confidence            347999999999 999999999984   4555666778876533 334432  22456788999999999985 788899


Q ss_pred             EEEEe
Q psy5866          92 ISVTL   96 (98)
Q Consensus        92 ~~W~~   96 (98)
                      +.|++
T Consensus       146 v~W~~  150 (241)
T 3grw_A          146 IQWLK  150 (241)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.30  E-value=1.6e-11  Score=76.26  Aligned_cols=86  Identities=22%  Similarity=0.344  Sum_probs=62.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSG   85 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~   85 (98)
                      ++.........+|.|.+++.+ |+|.|+|.+.+..+  ...+..+.+.|..++.....  .....+.+|+.+.|.|.+. 
T Consensus        50 ~~~~~~~~~~~~L~i~~~~~~-D~G~Y~C~~~n~~g--~~~~~~~~l~v~~~~~~~~~--~~~~~v~~G~~v~l~C~~~-  123 (291)
T 2wim_A           50 RVVVQKEGVRSRLTIYNANIE-DAGIYRCQATDAKG--QTQEATVVLEIYQKLTFREV--VSPQEFKQGEDAEVVCRVS-  123 (291)
T ss_dssp             TEEEEEETTEEEEEECSCCGG-GCEEEEEEEECSSS--CEEEEEEEEEEECCCBCCSC--CCSEEEETTSCEEECCCCB-
T ss_pred             cEEEecCCCEEEEEEccCCcc-cCEEEEEEEecccC--ceEEEEEEEEecCCcceEeC--CCChhhcCCCCEEEEEEEc-
Confidence            333433445678999999999 99999999998532  23345567777655443221  2446788999999999985 


Q ss_pred             CCCCCeEEEEec
Q psy5866          86 GSPDPQISVTLQ   97 (98)
Q Consensus        86 ~~p~~~~~W~~~   97 (98)
                      +.|.+.+.|+++
T Consensus       124 ~~p~~~v~W~~~  135 (291)
T 2wim_A          124 SSPAPAVSWLYH  135 (291)
T ss_dssp             CSSCCEEEEECC
T ss_pred             cCCCCEEEEEEC
Confidence            788899999864

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.30  E-value=4.2e-12  Score=79.50  Aligned_cols=86  Identities=10%  Similarity=0.220  Sum_probs=61.1

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC------------CCCCCEEeCCCCceecC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT------------PPQPPKISPGANPVATE   73 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~------------~~~~p~i~~~~~~~~~~   73 (98)
                      ++......+..+|+|.+++.+ |+|.|+|.+.+..+   . ...+.+.|..            +|..+.... ....+.+
T Consensus        48 ~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~~~n~~g---~-~~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~-~~~~v~~  121 (312)
T 2y23_A           48 RLEVESKGNKTKMTFKDLGMD-DLGIYSCDVTDTDG---I-ASSYLIDEEELKRLLALSHEHKFPTVPVKSE-LAVEILE  121 (312)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEESSSCC---C-CEEEEECHHHHHHHHHHHHHHHSCBCCEEEE-EEEEECS
T ss_pred             CEEEEEeCCEEEEEECcCCcc-CCEEEEEEEEeCCC---c-EEEEEEEEeeeeeeecccccCCCCccccccC-CceEEee
Confidence            444444556678999999999 99999999988532   1 2234455431            444333221 2568899


Q ss_pred             CCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          74 GRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      |+.+.|.|.+..+.|.+.+.|+++
T Consensus       122 G~~v~l~C~~~~~~p~~~v~W~~~  145 (312)
T 2y23_A          122 KGQVRFWMQAEKLSGNAKVNYIFN  145 (312)
T ss_dssp             SSCEEEEEEESCCCSSCEEEEEET
T ss_pred             CCCEEEEEEEEeCCCCCEEEEEEC
Confidence            999999999976889999999975

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.30  E-value=4.2e-11  Score=74.65  Aligned_cols=82  Identities=16%  Similarity=0.256  Sum_probs=61.2

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCC--CeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSG--QDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP   90 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~   90 (98)
                      .....|.|.+++.+ |+|.|+|.+.+....  ....+..+.|.|...+.+|.+...+...+.+|++++|.|.+. +. .+
T Consensus        59 ~~~~~L~I~~v~~~-DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~-~~-~~  135 (257)
T 1b6u_A           59 VSKANFSIGPMMQD-LAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSR-SS-YD  135 (257)
T ss_dssp             CEEEEEEECSCCTT-TCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECS-SC-CS
T ss_pred             CceEEEEeecCCcc-cCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCC-CC-Cc
Confidence            34678999999999 999999999864221  123355678888776667777543445789999999999986 33 47


Q ss_pred             eEEEEec
Q psy5866          91 QISVTLQ   97 (98)
Q Consensus        91 ~~~W~~~   97 (98)
                      .+.|+|+
T Consensus       136 ~~~w~k~  142 (257)
T 1b6u_A          136 MYHLSRE  142 (257)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            8999975

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.30  E-value=1.7e-11  Score=80.62  Aligned_cols=86  Identities=22%  Similarity=0.253  Sum_probs=59.2

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEEEEEEcCCCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIELVCSTSGGSP   88 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p   88 (98)
                      ...+.++|+|.+++.+ |+|.|+|.+.+.............|.|.. .+.+|.+. ..+...+.+|+.+.|.|.+.++.|
T Consensus        74 ~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P  152 (444)
T 1igt_B           74 NAKNTLYLQMSRLKSE-DTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFP  152 (444)
T ss_dssp             TTTTEEEEEECSCCGG-GCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBS
T ss_pred             CCCCeEEEEECCCCHH-HCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeC
Confidence            3456789999999999 99999999998532111233346777763 23344431 123334579999999999975567


Q ss_pred             CC-eEEEEec
Q psy5866          89 DP-QISVTLQ   97 (98)
Q Consensus        89 ~~-~~~W~~~   97 (98)
                      .| .+.|+++
T Consensus       153 ~p~~v~W~~~  162 (444)
T 1igt_B          153 EPVTLTWNSG  162 (444)
T ss_dssp             SCCEEEEGGG
T ss_pred             CCcEEEEecC
Confidence            76 9999864

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.30  E-value=3.4e-11  Score=73.32  Aligned_cols=85  Identities=18%  Similarity=0.172  Sum_probs=58.4

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEECCC-----CCeeeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEEEEE
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAAGS-----GQDLHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIELVC   81 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~-----~~~~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~l~C   81 (98)
                      .+...+.++|+|.+++.+ |+|.|.|.+.+...     ..........|.|.. ++.+|.+. ..+...+.+|+.+.|.|
T Consensus        72 ~~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C  150 (230)
T 3n9g_H           72 RDTSTSTVYMELSSLRSE-DTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC  150 (230)
T ss_dssp             EETTTTEEEEEECSCCGG-GCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEE
T ss_pred             ecCCCCEEEEEECCCChh-hCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEE
Confidence            445667899999999999 99999999987420     011223345677753 34455553 22334567899999999


Q ss_pred             EcCCCCC-CCeEEE
Q psy5866          82 STSGGSP-DPQISV   94 (98)
Q Consensus        82 ~~~~~~p-~~~~~W   94 (98)
                      .+.++.| .+.+.|
T Consensus       151 ~~~~~~P~~~~v~W  164 (230)
T 3n9g_H          151 LVKDYFPEPVTVSW  164 (230)
T ss_dssp             EEEEEBSSCCEEEE
T ss_pred             EEEeEECCCEEEEE
Confidence            9986566 457899

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.30  E-value=6.5e-12  Score=76.75  Aligned_cols=85  Identities=22%  Similarity=0.361  Sum_probs=57.8

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCC-CCeeeEeeEEEEEEC---CCCCCEE--eCCCCceecCCCcEEEEEEcCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGS-GQDLHSQVYTVTVLT---PPQPPKI--SPGANPVATEGRAIELVCSTSG   85 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~-~~~~~~~~~~l~v~~---~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~   85 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+... ..........|.|..   ...+|.+  .......+.+|+.+.|.|.+.+
T Consensus        72 ~~~~~sL~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g  150 (245)
T 4ei6_B           72 DGSYFTLKIQPTALE-DSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATG  150 (245)
T ss_dssp             TTSCEEEEECSCCGG-GCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEE
T ss_pred             cCceEEEEECCCCHh-HCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEee
Confidence            356789999999999 99999999986321 122333445677764   1233433  2223334667999999999875


Q ss_pred             CCCCC-eEEEEec
Q psy5866          86 GSPDP-QISVTLQ   97 (98)
Q Consensus        86 ~~p~~-~~~W~~~   97 (98)
                      ..|.+ .+.|+++
T Consensus       151 ~~p~~~~v~W~~~  163 (245)
T 4ei6_B          151 FYPDHVELSWWVN  163 (245)
T ss_dssp             EBSSCEEEEEEET
T ss_pred             EeCCCeEEEEEEC
Confidence            56655 8999875

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.30  E-value=2.2e-11  Score=73.19  Aligned_cols=77  Identities=21%  Similarity=0.440  Sum_probs=59.7

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC-CCEEeC--CCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-PPKISP--GANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~-~p~i~~--~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      ..+|.|.+++.. |+|.|+|.+.+.   .......+.|.|...+. .|.+..  .....+.+|+.+.|.|.+. +.|.+.
T Consensus        75 ~~~L~i~~~~~~-d~G~Y~C~~~n~---~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~  149 (231)
T 3ojm_B           75 HWSLIMESVVPS-DKGNYTCVVENE---YGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVY-SDAQPH  149 (231)
T ss_dssp             GTEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEE-CSSCCE
T ss_pred             cceEEEecCCcc-cCEEEEEEEecc---cCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEe-cCCCCE
Confidence            347999999999 999999999985   45556677888876543 334421  2456788999999999985 688899


Q ss_pred             EEEEe
Q psy5866          92 ISVTL   96 (98)
Q Consensus        92 ~~W~~   96 (98)
                      +.|++
T Consensus       150 v~W~~  154 (231)
T 3ojm_B          150 IQWIK  154 (231)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.30  E-value=2.2e-11  Score=72.26  Aligned_cols=80  Identities=25%  Similarity=0.520  Sum_probs=57.1

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      .++++|+|.+++.+ |+|.|.|.+.+..  .........+.+..++.. .........+.++..+.+.|.+. +.|.|.+
T Consensus        76 ~~~~sL~I~~v~~~-D~G~Y~C~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~c~~~-g~p~p~i  150 (218)
T 4frw_A           76 PLDGSVLLRNAVQA-DEGEYECRVSTFP--AGSFQARLRLRVLVPPLP-SLNPGPALEEGQGLTLAASCTAE-GSPAPSV  150 (218)
T ss_dssp             TTBCCEEESSCCGG-GCEEEEEEEEEET--TEEEEEEEEEEEEBCCCC-EEEECSCEETTCCSEEEEEEEEE-EBSCCEE
T ss_pred             CCeEEEEEeeccHH-HCCceeEEEEecc--CceeeeEEEEEEeeeccc-eeeeeeeeeeeeccccceeeecc-CCcCceE
Confidence            34578999999999 9999999998742  233333344444434333 33323456778889999999985 7899999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       151 ~W~~~  155 (218)
T 4frw_A          151 TWDTE  155 (218)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            99975

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.30  E-value=3.8e-12  Score=77.86  Aligned_cols=84  Identities=21%  Similarity=0.313  Sum_probs=56.9

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCC-CeeeEeeEEEEEEC---CCCCCEE--eCCCCceecCCCcEEEEEEcCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSG-QDLHSQVYTVTVLT---PPQPPKI--SPGANPVATEGRAIELVCSTSGG   86 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~-~~~~~~~~~l~v~~---~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~   86 (98)
                      .+.++|+|.+++.+ |+|.|+|.+.+.... .........|.|..   .+.+|.+  .......+.+|+.+.|.|.+.+.
T Consensus        74 ~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~  152 (246)
T 4dzb_B           74 LTLSTLTVTSAHPE-DSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF  152 (246)
T ss_dssp             TTEEEEEECSCCGG-GCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE
T ss_pred             CCEEEEEECCCCHH-HCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccC
Confidence            56789999999999 999999999864210 12333445677764   2234443  22233356679999999998754


Q ss_pred             CCCC-eEEEEec
Q psy5866          87 SPDP-QISVTLQ   97 (98)
Q Consensus        87 ~p~~-~~~W~~~   97 (98)
                      .|++ .+.|+++
T Consensus       153 ~p~~~~v~W~k~  164 (246)
T 4dzb_B          153 YPDHVELSWWVN  164 (246)
T ss_dssp             BSSCEEEEEEET
T ss_pred             cCCceEEEEEEC
Confidence            4443 8999975

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.29  E-value=9.9e-12  Score=76.59  Aligned_cols=76  Identities=14%  Similarity=0.302  Sum_probs=56.9

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEc--CCCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCST--SGGSPD   89 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~--~~~~p~   89 (98)
                      ..++.+|.|.+++.+ |+|.|+|.+.+... .......+.|.|.  +..|     ....+.+|+.+.|.|.+  ..+.|.
T Consensus        80 ~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~-~~~~~~~~~l~V~--~~~p-----~~~~v~~G~~v~L~C~~~~~~~~p~  150 (268)
T 3mj6_A           80 FHNDGSLLLQDVQKA-DEGIYTCEIRLKNE-SMVMKKPVELWVL--PEEP-----RDLRVRVGDTTQMRCSIQSTEEKRV  150 (268)
T ss_dssp             TTTBCCEEECSCCGG-GCEEEEEEEEETTC-CCEEEEEEEEEEE--CCCC-----SEEEEETTCCEEECCBCEESSSSCC
T ss_pred             CCCEEEEEECCCCHh-HCEEEEEEEEecCC-cceEEEEEEEEEe--ccCC-----CccccccCCcEEEEEEecCCCCCCc
Confidence            345578999999999 99999999998532 2334445666664  3322     23578899999999998  357789


Q ss_pred             CeEEEEe
Q psy5866          90 PQISVTL   96 (98)
Q Consensus        90 ~~~~W~~   96 (98)
                      +.+.|++
T Consensus       151 ~~v~W~~  157 (268)
T 3mj6_A          151 TKVNWMF  157 (268)
T ss_dssp             CEEEEEE
T ss_pred             cceEEEe
Confidence            9999997

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.29  E-value=1.3e-11  Score=72.22  Aligned_cols=75  Identities=16%  Similarity=0.203  Sum_probs=56.0

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS   93 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~   93 (98)
                      +..+|.|.+++.+ |+|.|+|.+.+.     ..+..+.|.|..  .++.+.. ....+.+|+.+.|.|.+.++.|.+.+.
T Consensus        52 ~~~~L~i~~~~~~-d~G~Y~C~~~n~-----~~s~~~~l~V~~--~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~  122 (175)
T 1fnl_A           52 QASSYFIDAATVN-DSGEYRCQTNLS-----TLSDPVQLEVHI--GWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVT  122 (175)
T ss_dssp             SCSEEEESSCCGG-GCEEEEEECSSS-----CCCCCEEEEEEC--SSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEE
T ss_pred             CceEEEEeCCCcc-cCEEEEEEeeCC-----cccccEEEEEeC--CCceeeC-CCceecCCCCEEEEEEcCCCCCceEEE
Confidence            3457999999999 999999999863     224456777762  2233433 446788999999999987555566999


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |+++
T Consensus       123 W~k~  126 (175)
T 1fnl_A          123 YLQN  126 (175)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9975

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.29  E-value=4.2e-11  Score=73.93  Aligned_cols=81  Identities=12%  Similarity=0.241  Sum_probs=59.4

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      .....|.|.+++.+ |+|.|+|.+.+... ....+..+.|.|.....+|.+...+...+.+|++++|.|.+..  +.+.+
T Consensus        57 ~~~~~L~I~~v~~~-DsG~Y~C~~~~~~~-~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~--~~~~~  132 (242)
T 1p6f_A           57 INKVKFYIPDMNSR-MAGQYSCIYRVGEL-WSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDT--ATSMF  132 (242)
T ss_dssp             CCEEEEEECSCCGG-GCEEEEEEEEETTE-ECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTT--SCSEE
T ss_pred             cceeEEEecCCCcc-cCeEEEEEEecCCc-cccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCC--CCCEE
Confidence            45678999999999 99999999976311 1123455778887655566664334567899999999999863  34689


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       133 ~w~k~  137 (242)
T 1p6f_A          133 LLLKE  137 (242)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99975

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.29  E-value=4.6e-11  Score=74.93  Aligned_cols=79  Identities=24%  Similarity=0.315  Sum_probs=60.8

Q ss_pred             CeEEEEEcccee-eccCeEEEEEEEECCCCCeeeEeeEEEEEECCC----CCCEE-eCCCCceecCCCcEEEEEEcCCCC
Q psy5866          14 GRYDLIISNASF-ERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP----QPPKI-SPGANPVATEGRAIELVCSTSGGS   87 (98)
Q Consensus        14 ~~~~l~I~~v~~-~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~----~~p~i-~~~~~~~~~~g~~~~l~C~~~~~~   87 (98)
                      ....|+|.+++. . |+|.|+|.+.+.   ....+..+.|.|..++    ..|.+ .......+.+|+.+.|.|.+. |.
T Consensus        61 ~~~~L~i~~~~~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~-g~  135 (304)
T 2yd9_A           61 AGAVLRIQPLRTPR-DENVYECVAQNS---VGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS-GN  135 (304)
T ss_dssp             TEEEEEECSCCTTT-TCSEEEEEEECS---SCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEE-CS
T ss_pred             CceEEEEecccccC-CCeEEEEEEECC---CCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECc-cC
Confidence            347899999998 9 999999999985   3445666788887543    22444 222456788999999999985 78


Q ss_pred             CCCeEEEEec
Q psy5866          88 PDPQISVTLQ   97 (98)
Q Consensus        88 p~~~~~W~~~   97 (98)
                      |.+.+.|+++
T Consensus       136 p~~~v~W~k~  145 (304)
T 2yd9_A          136 PDPEITWFKD  145 (304)
T ss_dssp             SCCEEEEEET
T ss_pred             CCCeEEEEEC
Confidence            9999999975

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.28  E-value=9.3e-12  Score=77.26  Aligned_cols=91  Identities=19%  Similarity=0.248  Sum_probs=60.5

Q ss_pred             EEEEe-CCCCeEEEEEccceeeccCeEEEEEEEECCCC-CeeeEeeEEEEEEC---CCCCCEE--eCCCCceecCCCcEE
Q psy5866           6 IIDYR-PDSGRYDLIISNASFERDNGKFECRLKAAGSG-QDLHSQVYTVTVLT---PPQPPKI--SPGANPVATEGRAIE   78 (98)
Q Consensus         6 ~~~~~-~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~-~~~~~~~~~l~v~~---~~~~p~i--~~~~~~~~~~g~~~~   78 (98)
                      |+.+. ...+.++|+|.+++.+ |+|.|+|.+.+.... .........|.|..   ...+|.+  .......+.+|+.+.
T Consensus        90 r~~~~~~~~~~~sL~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~  168 (270)
T 3qib_D           90 RFSAECPSNSPCSLEIQSSEAG-DSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  168 (270)
T ss_dssp             HEEEECCTTSCEEEEESSCCGG-GCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEE
T ss_pred             cEEEEeCCCcEEEEEECCCCHh-HCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceE
Confidence            44443 2466889999999999 999999999863211 12333445677765   2224443  222233455699999


Q ss_pred             EEEEcCCCCCCC-eEEEEec
Q psy5866          79 LVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        79 l~C~~~~~~p~~-~~~W~~~   97 (98)
                      |.|.+.+..|.+ .+.|+++
T Consensus       169 L~C~~~g~~P~~~~v~W~k~  188 (270)
T 3qib_D          169 LVCLATGFYPDHVELSWWVN  188 (270)
T ss_dssp             EEEEEEEEBSSCEEEEEEET
T ss_pred             EEEEecceeCCCeEEEEEEC
Confidence            999997557766 8999875

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.28  E-value=1.6e-11  Score=74.91  Aligned_cols=91  Identities=14%  Similarity=0.143  Sum_probs=59.7

Q ss_pred             eEEEEe--CCCCeEEEEEccceeeccCeEEEEEEEECCC-CCeeeEeeEEEEEEC--------CCCCCEEeCCCCceecC
Q psy5866           5 EIIDYR--PDSGRYDLIISNASFERDNGKFECRLKAAGS-GQDLHSQVYTVTVLT--------PPQPPKISPGANPVATE   73 (98)
Q Consensus         5 ~~~~~~--~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~-~~~~~~~~~~l~v~~--------~~~~p~i~~~~~~~~~~   73 (98)
                      .|+.+.  ...+.++|+|.+++.+ |+|.|.|.+.+... ..........|.|..        .+..+.+.......+.+
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~  144 (230)
T 1ypz_F           66 KKMEASKNPSASTSILTIYSLEEE-DEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNL  144 (230)
T ss_dssp             SEEEEEECCTTTEEEEEECSCCGG-GCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHH
T ss_pred             CeEEEEEcCCCCEEEEEECcCChh-hCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhcc
Confidence            455543  3347889999999999 99999999986310 011222345788862        12233443222234567


Q ss_pred             CCcEEEEEEcCCCCCC-CeEEEEe
Q psy5866          74 GRAIELVCSTSGGSPD-PQISVTL   96 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~-~~~~W~~   96 (98)
                      |..+.|.|.+.+..|. +.+.|++
T Consensus       145 g~~~~L~C~~~g~~P~~~~v~W~~  168 (230)
T 1ypz_F          145 HKTGTYLCLLEAFFPDVIRVYWKE  168 (230)
T ss_dssp             HSCEEEEEEEEEESSCCCEEEEEC
T ss_pred             CCcceEEEEEeeecCCCeEEEEEc
Confidence            8899999999866675 6999997

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.28  E-value=1.2e-11  Score=74.29  Aligned_cols=73  Identities=16%  Similarity=0.222  Sum_probs=56.5

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      .+|.|.+++.+ |+|.|+|.+.+     ...+..+.|.|..++  +.+. .+...+.+|+.+.|.|.+..+.|.+.+.|+
T Consensus        54 ~~L~i~~v~~~-D~G~Y~C~a~n-----~~~s~~~~l~V~~~p--~~~~-~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~  124 (204)
T 3sgj_C           54 SSYFIDAATVD-DSGEYRCQTQL-----STLSDPVQLEVHIGW--LLLQ-APRWVFKEEDPIHLRCHSWKNTALHKVTYL  124 (204)
T ss_dssp             SEEEESSCCGG-GCEEEEEEETT-----SBCCCCEEEEEECSS--EEEE-CSCSEEETTCCEEEEEEEGGGCCCEEEEEE
T ss_pred             cEEEEeccccc-CCEEEEEEeCC-----CcccccEEEEEecCc--eEec-CCceeEeCCCcEEEEEEecCCCCCceEEEE
Confidence            67999999999 99999999875     233445677776443  2333 244788899999999999766778899999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       125 k~  126 (204)
T 3sgj_C          125 QN  126 (204)
T ss_dssp             ET
T ss_pred             EC
Confidence            75

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.28  E-value=6.1e-12  Score=73.60  Aligned_cols=76  Identities=21%  Similarity=0.267  Sum_probs=56.9

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      .+..+|.|.+++.+ |+|.|+|.+.+.     ..+..+.|.|..+  ...+.. ....+.+|+.+.|.|.+..+.|.+.+
T Consensus        48 ~~~~~L~i~~v~~~-d~G~Y~C~~~~~-----~~s~~~~l~V~~~--~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~  118 (176)
T 1f2q_A           48 ETNSSLNIVNAKFE-DSGEYKCQHQQV-----NESEPVYLEVFSD--WLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKV  118 (176)
T ss_dssp             CCSSEEEECSCCGG-GCEEEEEECTTS-----SCCCCEEEEEECS--SEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEE
T ss_pred             CCceEEEEecccee-cCEEEEEEcCCc-----cccccEEEEEeCc--ceeecC-CcceeeCCCCEEEEEEecCCCCceEE
Confidence            44568999999999 999999999763     2234567777622  223322 44678899999999998667788899


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       119 ~W~~~  123 (176)
T 1f2q_A          119 IYYKD  123 (176)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99975

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.28  E-value=4.9e-11  Score=79.27  Aligned_cols=85  Identities=21%  Similarity=0.311  Sum_probs=58.1

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCC-e--eeEeeEEEEEEC-CCCCCEEeCCCCceecCCCcEEEEEEcCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQ-D--LHSQVYTVTVLT-PPQPPKISPGANPVATEGRAIELVCSTSGGS   87 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~-~--~~~~~~~l~v~~-~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~   87 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+..+.. .  .......|.|.. .+..|.+.......+.+|+.+.|.|.+.+..
T Consensus        76 ~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~  154 (475)
T 1iga_A           76 SATTAYMGLSSLRPE-DTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFF  154 (475)
T ss_pred             CCCeEEEEECCCChh-hCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeec
Confidence            356789999999999 9999999998853210 0  223345677763 3344555321222347899999999997555


Q ss_pred             CC-C-eEEEEec
Q psy5866          88 PD-P-QISVTLQ   97 (98)
Q Consensus        88 p~-~-~~~W~~~   97 (98)
                      |. + .+.|+++
T Consensus       155 P~~p~~v~W~~~  166 (475)
T 1iga_A          155 PQEPLSVTWSES  166 (475)
T ss_pred             CCCceEEEEcCC
Confidence            76 5 9999864

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.28  E-value=9.8e-12  Score=78.38  Aligned_cols=80  Identities=23%  Similarity=0.249  Sum_probs=58.4

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      .++++|+|.+++.+ |+|.|+|.+.+..  ....+..+.|.+..+|..+...  ....+..+....+.|.+..+.|.+.+
T Consensus        76 ~~~~sL~I~~v~~~-D~G~Y~C~v~~~~--~~~~~~~~~l~v~~~P~~~~~~--~~~~~~~~~~~~~~C~~~~~~P~~~i  150 (313)
T 4fqp_A           76 LRNASLRMFGLRVE-DEGNYTCLFVTFP--QGSRSVDIWLRVLAKPQNTAEV--QKVQLTGEPVPMARCVSTGGRPPAQI  150 (313)
T ss_dssp             CCBCCEEECSCCGG-GCEEEEEEEECSS--SCEEEEEEEECCBBCCEEEEEE--CCBCCCSSCEEEEEEEEEEEBSCCEE
T ss_pred             ccceEEEECcCChh-hCEEEEEEEeecc--CcceeeeeeeeeccCCcceecc--cceEeecCceEEEEEEccCccCCcEE
Confidence            34578999999999 9999999987642  2344555666665555433222  34566778888999998778999999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       151 ~W~~~  155 (313)
T 4fqp_A          151 TWHSD  155 (313)
T ss_dssp             EEEET
T ss_pred             EeecC
Confidence            99975

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.28  E-value=8.5e-12  Score=77.97  Aligned_cols=91  Identities=19%  Similarity=0.247  Sum_probs=59.8

Q ss_pred             EEEEeC-CCCeEEEEEccceeeccCeEEEEEEEECCC---CCeeeEeeEEEEEECC---CCCCEEe--CCCCceecCCCc
Q psy5866           6 IIDYRP-DSGRYDLIISNASFERDNGKFECRLKAAGS---GQDLHSQVYTVTVLTP---PQPPKIS--PGANPVATEGRA   76 (98)
Q Consensus         6 ~~~~~~-~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~---~~~~~~~~~~l~v~~~---~~~p~i~--~~~~~~~~~g~~   76 (98)
                      |+.+.. ..+.++|+|.+++.+ |+|.|+|.+.+...   ..........|.|...   +.+|.+.  ......+.+|+.
T Consensus        89 R~~~~~~~~~~~sL~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~  167 (279)
T 2wbj_D           89 KFLINHASLTLSTLTVTSAHPE-DSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQK  167 (279)
T ss_dssp             SEEEEECSSSEEEEEESSCCGG-GCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSC
T ss_pred             cEEEEeCCCCEEEEEEccCCcc-CCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCc
Confidence            444432 356789999999999 99999999998311   0112223356777653   2345442  112234457899


Q ss_pred             EEEEEEcCCCCCC-CeEEEEec
Q psy5866          77 IELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        77 ~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      +.|.|.+.+..|. +.+.|+++
T Consensus       168 v~L~C~~~g~~P~~~~v~W~k~  189 (279)
T 2wbj_D          168 ATLVCLATGFYPDHVELSWWVN  189 (279)
T ss_dssp             CEEEEEEEEEBSSCEEEEEEET
T ss_pred             eEEEEEEeeEcCCCcEEEEEEC
Confidence            9999999755564 79999975

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.27  E-value=7.6e-12  Score=81.81  Aligned_cols=89  Identities=10%  Similarity=0.133  Sum_probs=61.5

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEEEEcC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELVCSTS   84 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~C~~~   84 (98)
                      |+......+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|..+..+|.+.. .......+|..+.|.|.+.
T Consensus        65 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~~~--~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~  141 (438)
T 1qgc_4           65 RFSGSGSRTDFTLTIDPVEAD-DVATYYCQQSNEVP--LTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLN  141 (438)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSTT--CCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEE
T ss_pred             cEEEEccCCcEEEEeCCCcCc-CCeeEEEEEecCCC--ccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEc
Confidence            344444556788999999999 99999999988532  1223345677755444555521 1333445688999999987


Q ss_pred             CCCCCC-eEEEEec
Q psy5866          85 GGSPDP-QISVTLQ   97 (98)
Q Consensus        85 ~~~p~~-~~~W~~~   97 (98)
                      ++.|.+ .+.|+++
T Consensus       142 g~~p~~~~v~W~k~  155 (438)
T 1qgc_4          142 NFYPKDINVKWKID  155 (438)
T ss_dssp             EEBSSCEEEEEEET
T ss_pred             cccCCCcEEEEEEC
Confidence            657777 8999975

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.27  E-value=2.3e-11  Score=76.19  Aligned_cols=86  Identities=14%  Similarity=0.098  Sum_probs=59.0

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECC------CCCeeeEeeEEEEEEC-CC-----------CCCEEeCCCCceec
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAG------SGQDLHSQVYTVTVLT-PP-----------QPPKISPGANPVAT   72 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~------~~~~~~~~~~~l~v~~-~~-----------~~p~i~~~~~~~~~   72 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+..      ...........|.|.. ++           .++.+...+...+.
T Consensus        74 ~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~  152 (280)
T 3fku_X           74 QSTRTAYMDLRSLRSE-DTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKG  152 (280)
T ss_dssp             TTTTEEEEEECSCCST-TCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEEC
T ss_pred             CCCCEEEEEECCCChh-hCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEe
Confidence            5677889999999999 9999999998741      0012233345666654 11           13334333347889


Q ss_pred             CCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      +|+++.|.|.+....+ .+.+.|+++
T Consensus       153 ~G~~v~L~C~~~~~~~~~~~v~W~r~  178 (280)
T 3fku_X          153 LRQTATLTCTGNSNNVGNQGAAWLQQ  178 (280)
T ss_dssp             TTCCEEEEEECCCCCCCTTCCEEEEE
T ss_pred             cCCCEEEEEEecCCCCCCceEEEEEE
Confidence            9999999999875344 478999985

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.27  E-value=6.2e-13  Score=80.72  Aligned_cols=82  Identities=12%  Similarity=0.148  Sum_probs=48.5

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEEEEcCCCCCCC-
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELVCSTSGGSPDP-   90 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~C~~~~~~p~~-   90 (98)
                      .+.++|+|.+++.+ |+|.|+|.+.+...  ........|.|...+.+|.+.. .+.....+|+.+.|.|.+.++.|.+ 
T Consensus        90 ~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~--~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~  166 (233)
T 3bqu_C           90 GTDFVFTIENMLSE-DVADYYCLQSDNLP--YTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDI  166 (233)
T ss_dssp             EEEEEEC-----CC-CCSEEEEEECSSSS--CCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCE
T ss_pred             CCEEEEEECCCCHH-HCEEEEEEEecCCc--eeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCce
Confidence            34568999999999 99999999987422  1112223466655444555521 1333445789999999997545654 


Q ss_pred             eEEEEec
Q psy5866          91 QISVTLQ   97 (98)
Q Consensus        91 ~~~W~~~   97 (98)
                      .+.|+++
T Consensus       167 ~v~W~k~  173 (233)
T 3bqu_C          167 NVKWKID  173 (233)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            7999975

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.26  E-value=2.1e-11  Score=75.44  Aligned_cols=87  Identities=22%  Similarity=0.282  Sum_probs=55.4

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCC-------------C------CeeeEeeEEEEEE-CCCCCCEEe-CCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGS-------------G------QDLHSQVYTVTVL-TPPQPPKIS-PGAN   68 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~-------------~------~~~~~~~~~l~v~-~~~~~p~i~-~~~~   68 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+...             +      .........+.|. ..+..|.+. ..+.
T Consensus        72 ~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~  150 (248)
T 3u2s_H           72 DNSKDTLYLQMNSLRVE-DTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPS  150 (248)
T ss_dssp             EGGGTEEEEEECSCCGG-GCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC
T ss_pred             cCCCCEEEEEECCCCHH-HCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCC
Confidence            34467889999999999 99999999986210             0      1122233567776 444556553 2233


Q ss_pred             ceecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      .....|..+.|.|.+.+..| .+.+.|+++
T Consensus       151 ~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~  180 (248)
T 3u2s_H          151 SKSTSGGTAALGCLVKDYFPEPVTVSWNSG  180 (248)
T ss_dssp             ------CEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ccccCCCcEEEEEEEeeEECCCeEEEEeEC
Confidence            45567999999999986677 567999764

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.26  E-value=2.3e-11  Score=74.57  Aligned_cols=86  Identities=19%  Similarity=0.208  Sum_probs=56.8

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCC----------CeeeEeeEEEEEE-CCCCCCEEe-CCCCceecCCCcEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSG----------QDLHSQVYTVTVL-TPPQPPKIS-PGANPVATEGRAIE   78 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~----------~~~~~~~~~l~v~-~~~~~p~i~-~~~~~~~~~g~~~~   78 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+....          .........+.|. .++..|.+. ..+...+..|+.+.
T Consensus        81 ~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~  159 (239)
T 3tv3_H           81 TPKNLVFLKLNSVTAA-DTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAA  159 (239)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEE
T ss_pred             CCCCEEEEEECCCChh-hCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEE
Confidence            4467889999999999 999999999863100          0112233466775 344556553 22344566799999


Q ss_pred             EEEEcCCCCCCC-eEEEEec
Q psy5866          79 LVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        79 l~C~~~~~~p~~-~~~W~~~   97 (98)
                      |.|.+.++.|.+ .+.|+++
T Consensus       160 l~C~~~~~~p~~~~v~W~~~  179 (239)
T 3tv3_H          160 LGCLVKDYFPEPVTVSWNSG  179 (239)
T ss_dssp             EEEEEEEEBSSCCEEEEGGG
T ss_pred             EEEEEeeEeCCCeEEEEEEC
Confidence            999998667755 5899764

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.26  E-value=3.6e-11  Score=78.62  Aligned_cols=86  Identities=20%  Similarity=0.296  Sum_probs=58.7

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCC--CeeeEeeEEEEEEC-CCCCCEE-eCCCCceecCCCcEEEEEEcCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSG--QDLHSQVYTVTVLT-PPQPPKI-SPGANPVATEGRAIELVCSTSGG   86 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~-~~~~p~i-~~~~~~~~~~g~~~~l~C~~~~~   86 (98)
                      ...+.++|.|.+++.+ |+|.|+|.+.+....  .........+.|.. ++.+|.+ ...+...+.+|+.+.|.|.+.+.
T Consensus       292 ~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~  370 (438)
T 1qgc_4          292 NAKNTLYLQMSSLRSA-DTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGY  370 (438)
T ss_dssp             TTTTEEEEEECSCCGG-GCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESC
T ss_pred             cCCCeEEEEECCCChh-hCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccc
Confidence            3456779999999999 999999999973221  11222345677763 2344544 22234567789999999999744


Q ss_pred             CCCC-eEEEEec
Q psy5866          87 SPDP-QISVTLQ   97 (98)
Q Consensus        87 ~p~~-~~~W~~~   97 (98)
                      .|.+ .+.|+++
T Consensus       371 ~P~~~~v~W~~~  382 (438)
T 1qgc_4          371 FPEPVTVTWNSG  382 (438)
T ss_dssp             BSSCCEEEEGGG
T ss_pred             cCCCcEEEEecC
Confidence            4877 9999864

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.26  E-value=6.4e-12  Score=75.31  Aligned_cols=76  Identities=14%  Similarity=0.255  Sum_probs=53.5

Q ss_pred             EEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        18 l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      |.|.+++.. |+|.|+|.+.+..+  ...+..+.+.|...+....+. .....+.+|+.+.|.|.+..+.|.+.+.|+++
T Consensus        71 l~i~~v~~~-d~G~Y~C~~~n~~g--~~~~~~~~l~v~~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~  146 (217)
T 2vr9_A           71 RTMQGKKEQ-DGGEYWCVAKNRVG--QAVSRHASLQIAVLRDDFRVE-PKDTRVAKGETALLECGPPKGIPEPTLIWIKD  146 (217)
T ss_dssp             SCCBSSSCB-CCEEEEEEEEETTE--EEECCCEEEEECEECCSCSBC-CCCEEECTTSCEEECCBCCCEESCCEEEEEET
T ss_pred             EEeccCCcc-cCceEEEEEecCCC--ccccccceEEEEEeCCCcEEC-CCccEEcCCCeEEEEEECCCCCCCCeEEEEEC
Confidence            478899999 99999999998521  222334555554322222222 24567889999999999856899999999975

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.26  E-value=1.9e-11  Score=71.74  Aligned_cols=71  Identities=18%  Similarity=0.388  Sum_probs=53.5

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      ..+.++|.|.+++.+ |+|.|+|.+.+.     .  ..+.|.|...    ..  .....+.+|+.+.|.|.+. +.|.|.
T Consensus        64 ~~~~~~L~i~~v~~~-D~G~Y~C~~~~~-----~--~~~~l~V~~~----~~--~~~~~v~~g~~~~l~C~~~-~~p~~~  128 (184)
T 2ny1_B           64 DQGNFPLIIKNLKIE-DSDTYICEVEDQ-----K--EEVQLLVFGL----TA--NSDTHLLQGQSLTLTLESP-PGSSPS  128 (184)
T ss_dssp             GGTBCCEEECSCCGG-GCEEEEEEETTE-----E--EEEEEEEEEE----EE--SSCSEEETTCCEEEEEECC-TTCCCE
T ss_pred             cCCeEEEEEecCCHH-HCEEEEEEEEcC-----C--CcEEEEEEEe----cC--CCCceeecCCCEEEEEEcC-CCCCCE
Confidence            345677999999999 999999999763     1  2445666421    12  2345788999999999986 578999


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       129 v~W~~~  134 (184)
T 2ny1_B          129 VQCRSP  134 (184)
T ss_dssp             EEEECT
T ss_pred             EEEEeC
Confidence            999875

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.26  E-value=3.5e-11  Score=79.47  Aligned_cols=86  Identities=16%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCC--------CC-eeeEeeEEEEEECC-CCCCEEe-CCCCceecCCCcEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGS--------GQ-DLHSQVYTVTVLTP-PQPPKIS-PGANPVATEGRAIEL   79 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~--------~~-~~~~~~~~l~v~~~-~~~p~i~-~~~~~~~~~g~~~~l   79 (98)
                      ...+.++|+|.+++.+ |+|.|+|.+.+..+        .. ........|.|... +.+|.+. ......+.+|+.+.|
T Consensus        74 ~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  152 (457)
T 1hzh_H           74 TSANTAYMELRSLRSA-DTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAAL  152 (457)
T ss_dssp             TTTTEEEEEECSCCGG-GCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEE
T ss_pred             CCCCEEEEEECCCCcc-cCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEE
Confidence            3456789999999999 99999999987532        00 02223456777642 2345442 123345689999999


Q ss_pred             EEEcCCCCCC-CeEEEEec
Q psy5866          80 VCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        80 ~C~~~~~~p~-~~~~W~~~   97 (98)
                      .|.+.+..|. +.+.|+++
T Consensus       153 ~C~~~g~~P~~~~v~W~k~  171 (457)
T 1hzh_H          153 GCLVKDYFPEPVTVSWNSG  171 (457)
T ss_dssp             EEEEESBBSCCCEEEETTT
T ss_pred             EEEEeEEeCCCeEEEEEeC
Confidence            9999755575 89999864

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.25  E-value=5.3e-12  Score=83.39  Aligned_cols=73  Identities=14%  Similarity=0.132  Sum_probs=56.6

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      .+|.|.+++.+ |+|.|+|.+.|    .  .+..+.|.|..+|.. .+.+ .....+.+|+.+.|.|.+. |.|.|.+.|
T Consensus       290 ~~L~I~~v~~~-D~G~Y~C~A~N----~--~~~~~~L~V~~~p~i-~~~~~~~~~~v~~G~~v~l~C~~~-g~P~p~i~W  360 (423)
T 3qs7_E          290 LFAFVSSVARN-DTGYYTCSSSK----H--PSQSALVTIVEKGFI-NATNSSEDYEIDQYEEFCFSVRFK-AYPQIRCTW  360 (423)
T ss_dssp             EEEEESSCCTT-TCEEEEEEETT----E--EEEEEEEEEESSCEE-EEC---CEECCCTTCCCCEEEEEE-EESCCEEEE
T ss_pred             EEEEEeecCHH-HCEEEEEEEec----C--CCceEEEEEEeCCcc-eEcCCCccEEecCCCeEEEEEEEE-EcCCCeEEE
Confidence            46999999999 99999999987    2  666778888755432 2211 1345678899999999985 789999999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       361 ~k~  363 (423)
T 3qs7_E          361 TFS  363 (423)
T ss_dssp             EET
T ss_pred             EEC
Confidence            975

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.25  E-value=4.5e-11  Score=75.26  Aligned_cols=84  Identities=21%  Similarity=0.209  Sum_probs=56.7

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCC--CeeeEeeEEEEEECC-----------C--CCCEEeC-CCCceecCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSG--QDLHSQVYTVTVLTP-----------P--QPPKISP-GANPVATEGR   75 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~~-----------~--~~p~i~~-~~~~~~~~g~   75 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+...+  .........|.|..+           +  ..+.+.. .....+.+|+
T Consensus        97 ~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~  175 (291)
T 2gki_A           97 SSSTAYMELSSLTSE-DSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGE  175 (291)
T ss_dssp             GGTEEEEEECSCCGG-GCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTS
T ss_pred             CCCEEEEEECcCCHH-HCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCC
Confidence            345789999999999 999999999875211  111223356777641           1  1233432 2345789999


Q ss_pred             cEEEEEEcCCCCCCC------eEEEEec
Q psy5866          76 AIELVCSTSGGSPDP------QISVTLQ   97 (98)
Q Consensus        76 ~~~l~C~~~~~~p~~------~~~W~~~   97 (98)
                      ++.|.|.+. +.|.+      .+.|+++
T Consensus       176 ~v~L~C~~~-~~~~~~~~~~~~v~W~k~  202 (291)
T 2gki_A          176 KVTMSCKSS-QSLFNSRTRKNYLAWYQQ  202 (291)
T ss_dssp             CEEEEEEES-SCCEETTTTEECEEEEEE
T ss_pred             cEEEEEEcC-CccccccccceeEEEEEE
Confidence            999999986 45554      8999986

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.25  E-value=6e-12  Score=73.73  Aligned_cols=78  Identities=27%  Similarity=0.428  Sum_probs=54.1

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|.|.+++.+ |+|.|+|.+.+... .......+.+.|..+|............+.+|+.+.|.|.+. +.|.+.+.|++
T Consensus        58 ~L~i~~~~~~-d~G~Y~C~~~~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~-g~p~~~v~W~~  134 (189)
T 2v5t_A           58 NLQILNINKS-DEGIYRCEGRVEAR-GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFR  134 (189)
T ss_dssp             CEEETTCCGG-GCEEEEEEEEETTT-TEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEE-EESCCEEEEEE
T ss_pred             CEEEeeCCHh-HCcEEEEEEEEcCC-CceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEc-cCCCCeEEEEE
Confidence            5999999999 99999999998643 233334455665543321110100134677899999999995 67899999997


Q ss_pred             c
Q psy5866          97 Q   97 (98)
Q Consensus        97 ~   97 (98)
                      +
T Consensus       135 ~  135 (189)
T 2v5t_A          135 N  135 (189)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.25  E-value=2.2e-11  Score=78.45  Aligned_cols=74  Identities=30%  Similarity=0.452  Sum_probs=58.2

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..+|.. .+.+ ....+.+|+.+.|.|.+. |.|.|.+.|++
T Consensus       271 ~L~i~~v~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~~~p~~-~~~~-~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~  343 (388)
T 2v5m_A          271 TLIIKDAVVE-DSGKYLCVVNNS---VGGESVETVLTVTAPLSA-KIDP-PTQTVDFGRPAVFTCQYT-GNPIKTVSWMK  343 (388)
T ss_dssp             EEEESSCCGG-GCEEEEEEEECS---SCEEEEEEEEEEEEEEEE-EEES-SEEEECTTSCEEEEEEEE-EECCCEEEEEE
T ss_pred             EEEECcCCHH-HCeEEEEEEecC---CCceeEEEEEEEeCCCcc-ccCC-CcEEecCCCCEEEEEEec-cccCCeEEEEE
Confidence            6999999999 999999999985   344566677887654432 2232 456788999999999985 78999999997


Q ss_pred             c
Q psy5866          97 Q   97 (98)
Q Consensus        97 ~   97 (98)
                      +
T Consensus       344 ~  344 (388)
T 2v5m_A          344 D  344 (388)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.24  E-value=1.2e-10  Score=79.65  Aligned_cols=78  Identities=26%  Similarity=0.423  Sum_probs=62.7

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      ...|.|.+++.+ |+|.|+|.+.+..+  ...+..+.|.|..+|..+.+.+ ....+.+|+.+.|.|.+ .|.|.+.+.|
T Consensus       163 ~~~L~i~~~~~~-d~G~Y~C~a~n~~~--~~~s~~~~l~V~~~p~~~~~~~-~~~~~~~G~~~~l~C~~-~g~p~~~i~W  237 (642)
T 1e07_A          163 NRTLTLFNVTRN-DTASYKCETQNPVS--ARRSDSVILNVLYGPDAPTISP-LNTSYRSGENLNLSCHA-ASNPPAQYSW  237 (642)
T ss_pred             CCEEEEeCCCcc-cCeeEEEEEecCCC--CcccceEEEEEEeCCCCcEEec-CCcccccCCEEEEEEEc-CCCCCcEEEE
Confidence            357999999999 99999999998533  2334557888887777777754 45678899999999998 5899999999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       238 ~~~  240 (642)
T 1e07_A          238 FVN  240 (642)
T ss_pred             EEC
Confidence            975

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.24  E-value=5.1e-11  Score=74.00  Aligned_cols=79  Identities=20%  Similarity=0.286  Sum_probs=59.9

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      .+..+|.|.+++.+ |+|.|+|.+.+..+  ...+..+.|.|..+|.  .........+.+|+.+.|.|.+. +.|.+.+
T Consensus        59 ~~~~~L~i~~~~~~-D~G~Y~C~~~n~~g--~~~~~~~~l~v~~~~~--~~~~~~~~~~~~g~~v~l~C~~~-~~p~~~v  132 (291)
T 1qz1_A           59 DDSSTLTIYNANID-DAGIYKCVVTAEDG--TQSEATVNVKIFQKLM--FKNAPTPQEFKEGEDAVIVCDVV-SSLPPTI  132 (291)
T ss_dssp             TTEEEEEECSCCGG-GCEEEEEEEECTTS--CEEEEEEEEEEECCSE--EEECCSSEEEETTSCEEECCEEE-CSSCCEE
T ss_pred             CCeEEEEEecCCCC-CCEEEEEEEEcCCC--CeeEEEEEEEeecccc--ccCCCCcccccCCCeEEEEEEec-cCCCCEE
Confidence            45678999999999 99999999998532  3445567777764432  22222456789999999999986 6788999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       133 ~W~~~  137 (291)
T 1qz1_A          133 IWKHK  137 (291)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99975

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.24  E-value=1.9e-11  Score=76.50  Aligned_cols=81  Identities=22%  Similarity=0.304  Sum_probs=60.2

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC--C-EEeCCCCceecCCCcEEEEEEcCCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP--P-KISPGANPVATEGRAIELVCSTSGGSP   88 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~--p-~i~~~~~~~~~~g~~~~l~C~~~~~~p   88 (98)
                      ..+..+|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..+|..  | .+.......+.+|+.+.|.|.+. |.|
T Consensus        58 ~~~~~~L~i~~v~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-g~p  132 (305)
T 2nzi_A           58 KGGYHQLIIASVTDD-DATVYQVRATNQ---GGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS-GKP  132 (305)
T ss_dssp             TTTEEEEEESSCCGG-GCSEEEEEEEET---TEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEE-EES
T ss_pred             CCCEEEEEEccCChh-hCeEEEEEEEcC---CCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEEC-CCC
Confidence            456678999999999 999999999985   445566677777543321  1 11111345678899999999985 789


Q ss_pred             CCeEEEEec
Q psy5866          89 DPQISVTLQ   97 (98)
Q Consensus        89 ~~~~~W~~~   97 (98)
                      .+.+.|+++
T Consensus       133 ~p~i~W~~~  141 (305)
T 2nzi_A          133 DPVITWQKG  141 (305)
T ss_dssp             CCEEEEEES
T ss_pred             CCEEEEEEC
Confidence            999999975

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.24  E-value=4.3e-11  Score=75.08  Aligned_cols=76  Identities=21%  Similarity=0.339  Sum_probs=56.8

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeE-eeEEEEEECCCCCCEEe-CCCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHS-QVYTVTVLTPPQPPKIS-PGANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~-~~~~l~v~~~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      .|.|.+++.. |+|.|+|.+.+.   ..... ....+.|.....+|.+. ......+.+|+.+.|.|.+. |.|.|.+.|
T Consensus       165 ~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~-g~p~p~v~W  239 (304)
T 2yd9_A          165 ALQIESSEET-DQGKYECVATNS---AGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAV-GSPMPYVKW  239 (304)
T ss_dssp             CEEECSCCGG-GCEEEEEEEEET---TEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEE-EESCCEEEE
T ss_pred             EEEEccCCcc-cCEEEEEEEEeC---CCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEe-eeCCCEEEE
Confidence            6999999999 999999999985   22222 22566665444455542 22446788999999999985 789999999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       240 ~~~  242 (304)
T 2yd9_A          240 MQG  242 (304)
T ss_dssp             EET
T ss_pred             EEC
Confidence            975

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.24  E-value=7e-11  Score=74.61  Aligned_cols=81  Identities=17%  Similarity=0.308  Sum_probs=60.7

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCC--eeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQ--DLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~--~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      ....|.|.+++.+ |+|.|+|.+.+..+..  ...+..+.|.|...+.+|.+...+...+.+|+.+.|.|.+.  .|.+.
T Consensus       172 ~~~~L~i~~v~~~-D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~--~~~~~  248 (316)
T 3vh8_G          172 SKANFSIGPMMLA-LAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR--SSYDM  248 (316)
T ss_dssp             EEEEEEECSCCGG-GCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEES--SCCSE
T ss_pred             ceEEEEECCCChh-hCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECC--CCCcE
Confidence            4567999999999 9999999999863311  12255577788766666766433445788999999999985  46789


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       249 ~~W~k~  254 (316)
T 3vh8_G          249 YHLSRE  254 (316)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999875

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.23  E-value=4.1e-11  Score=75.14  Aligned_cols=87  Identities=18%  Similarity=0.261  Sum_probs=60.9

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE-----------------CCCCCC-EEeC-C
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL-----------------TPPQPP-KISP-G   66 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~-----------------~~~~~p-~i~~-~   66 (98)
                      ++......+...|.|.+++.+ |+|.|+|.+.+.   .......+.+.|.                 .....| .+.. .
T Consensus       154 ~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  229 (317)
T 2y25_A          154 RVKTGVTGEQIWLQINEPTPN-DKGKYVMELFDG---KTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP  229 (317)
T ss_dssp             SEEEEECSSEEEEEEESCCGG-GCEEEEEEEECS---SCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCC
T ss_pred             CeEEeccCCEEEEEECcCCcc-cCeeEEEEEEeC---CceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCC
Confidence            344444556677999999999 999999999984   3444444555432                 111222 3322 2


Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus       230 ~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~  259 (317)
T 2y25_A          230 DVVTIQEGKALNLTCNVW-GDPPPEVSWLKN  259 (317)
T ss_dssp             SEEEEETTSBBCEEEEEE-CSSCCEEEEEES
T ss_pred             ccEEEEcCCEEEEEEEEe-cCCCCEEEEEEC
Confidence            345788999999999986 789999999975

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.23  E-value=1.4e-10  Score=72.89  Aligned_cols=79  Identities=23%  Similarity=0.325  Sum_probs=56.2

Q ss_pred             EEEEccceeeccCeEEEEEEE-ECCCCCeeeEeeEEEEEECC--CCCCEEeCCCC--ceecCCCcEEEEEEcCCCCCCCe
Q psy5866          17 DLIISNASFERDNGKFECRLK-AAGSGQDLHSQVYTVTVLTP--PQPPKISPGAN--PVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~-~~~~~~~~~~~~~~l~v~~~--~~~p~i~~~~~--~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      .|.|.+++.+ |+|.|+|.+. +..+........+.+.+..+  +.+|.+.....  ..+.+|+.+.|.|.+. |.|.|.
T Consensus       163 ~L~i~~v~~~-d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~-g~P~p~  240 (315)
T 1itb_B          163 RLIVMNVAEK-HRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT-GQLSDI  240 (315)
T ss_dssp             EEEESSCCGG-GCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEE-ECTTSE
T ss_pred             eEEEEeceeh-hCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEe-cCCCCe
Confidence            6999999999 9999999999 54221122233444544432  35566643232  4688999999999996 789999


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       241 i~W~~~  246 (315)
T 1itb_B          241 AYWKWN  246 (315)
T ss_dssp             EEEEET
T ss_pred             eEEEEC
Confidence            999974

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.23  E-value=9.2e-11  Score=70.70  Aligned_cols=80  Identities=23%  Similarity=0.294  Sum_probs=59.5

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC------------CCEE-eCCCCceecCCCcEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ------------PPKI-SPGANPVATEGRAIELV   80 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~------------~p~i-~~~~~~~~~~g~~~~l~   80 (98)
                      ....|.|.+++.. |+|.|+|.+.+..+  ...+..+.|.|...+.            +|.+ .......+.+|+.+.|.
T Consensus        63 ~~~~L~i~~v~~~-d~G~Y~C~~~n~~~--~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~  139 (218)
T 3k0w_A           63 NTSELIFNAVHVK-DAGFYVCRVNNNFT--FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQ  139 (218)
T ss_dssp             CSSEEEETTCCGG-GCEEEEEEEECTTC--CEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEE
T ss_pred             CCCEEEEccCChh-hCeEeEEEEEcCCC--CceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEE
Confidence            3457999999999 99999999998522  2334456777765431            1344 22245678999999999


Q ss_pred             EEcCCCCCCCeEEEEec
Q psy5866          81 CSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        81 C~~~~~~p~~~~~W~~~   97 (98)
                      |.+ .+.|.+.+.|+++
T Consensus       140 C~~-~g~p~~~v~W~~~  155 (218)
T 3k0w_A          140 CVA-VGSPIPHYQWFKN  155 (218)
T ss_dssp             CEE-EBSSCCEEEEEET
T ss_pred             EEe-cccCCCeEEEEEC
Confidence            999 4789999999975

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.23  E-value=1.8e-11  Score=75.44  Aligned_cols=84  Identities=18%  Similarity=0.277  Sum_probs=56.1

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC---CCCCEEe--CCCCceecCCCcEEEEEEcCCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP---PQPPKIS--PGANPVATEGRAIELVCSTSGGS   87 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~---~~~p~i~--~~~~~~~~~g~~~~l~C~~~~~~   87 (98)
                      .+.++|+|.+++.+ |+|.|+|.+.+.............|.|...   +.+|.+.  ......+.+|+.+.|.|.+.+..
T Consensus        73 ~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~  151 (252)
T 1oga_E           73 KESFPLTVTSAQKN-PTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFY  151 (252)
T ss_dssp             TTBCCEEECSCCSC-CCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEB
T ss_pred             CCEEEEEECcCChh-hCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEc
Confidence            45678999999999 999999999874111112223346777642   2455542  11223455789999999997556


Q ss_pred             CC-CeEEEEec
Q psy5866          88 PD-PQISVTLQ   97 (98)
Q Consensus        88 p~-~~~~W~~~   97 (98)
                      |. +.+.|+++
T Consensus       152 P~~~~v~W~~~  162 (252)
T 1oga_E          152 PDHVELSWWVN  162 (252)
T ss_dssp             SSCEEEEEEET
T ss_pred             CCCcEEEEEEC
Confidence            75 48999975

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.22  E-value=1.8e-10  Score=73.26  Aligned_cols=79  Identities=22%  Similarity=0.340  Sum_probs=58.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC--CCCC-eeeEeeEEEEEECCCCC--CEEeCCCCceecCCCcEEEEEEcCCCCC--
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA--GSGQ-DLHSQVYTVTVLTPPQP--PKISPGANPVATEGRAIELVCSTSGGSP--   88 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~--~~~~-~~~~~~~~l~v~~~~~~--p~i~~~~~~~~~~g~~~~l~C~~~~~~p--   88 (98)
                      ..|.|.+++.+ |+|.|+|.+.+.  .++. ...+..+.|.|..++..  |.+ ......+.+|+.+.|.|.+. +.|  
T Consensus       182 ~~L~I~~v~~~-D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~-g~p~~  258 (329)
T 3oq3_B          182 QNLIIHNPELE-DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAV-STSLL  258 (329)
T ss_dssp             TEEEECSCCGG-GCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEE-ETTCC
T ss_pred             CEEEEeecChh-hCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEE-ECCCC
Confidence            46999999999 999999999984  2222 33344577888766543  445 33557889999999999997 555  


Q ss_pred             -CC-eEEEEec
Q psy5866          89 -DP-QISVTLQ   97 (98)
Q Consensus        89 -~~-~~~W~~~   97 (98)
                       .+ .+.|+++
T Consensus       259 ~~~i~v~W~~~  269 (329)
T 3oq3_B          259 VDDVLIDWENP  269 (329)
T ss_dssp             TTCCEEEEECT
T ss_pred             CCCcEEEEEEC
Confidence             67 8899875

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.22  E-value=8e-12  Score=77.69  Aligned_cols=84  Identities=19%  Similarity=0.237  Sum_probs=59.8

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCC
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSP   88 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p   88 (98)
                      ........+|.|.+++.. |+|.|+|.+.+..   ...+..+.|.|..++...... .....+.+|+.+.|.|.+.+..+
T Consensus        44 ~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~n~~---~~~~~~~~l~V~~~~~~~~~~-~~~~~v~~g~~v~l~C~~~~~~~  118 (292)
T 4dkd_C           44 LYSDGSSSILSTNNATFQ-NTGTYRCTEPGDP---LGGSAAIHLYVKDPARPWNVL-AQEVVVFEDQDALLPCLLTDPVL  118 (292)
T ss_dssp             ECCBTTEEEEEESSCCGG-GCSCEEECCCC-------CCEEECCEECCSSCCEEES-CSEEEEETTSCEECCEEESSGGG
T ss_pred             EeccCceEEEEEcccccc-cCEEEEEEEccCC---CCcceEEEEEEcCcccccccc-CCeEEEcCCCcEEEeeeCCCCCc
Confidence            344455678999999999 9999999998742   333566777887655433333 35678899999999999974332


Q ss_pred             CCeEEEEec
Q psy5866          89 DPQISVTLQ   97 (98)
Q Consensus        89 ~~~~~W~~~   97 (98)
                      .+.+.|+++
T Consensus       119 ~~~v~W~~~  127 (292)
T 4dkd_C          119 EAGVSLVRV  127 (292)
T ss_dssp             GSSEEEEEG
T ss_pred             ceeEEEEec
Confidence            378999874

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.22  E-value=1.1e-10  Score=79.79  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=60.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      .+|+|.+++.+ |+|.|+|.+.+..  .......+.|.|..++..|.+.......+.+|+.+.|.|.+. + |.+.+.|+
T Consensus        71 ~sL~I~~v~~~-D~G~Y~C~~~~~~--~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~-~-p~~~v~W~  145 (642)
T 1e07_A           71 ASLLIQNIIQN-DTGFYTLHVIKSD--LVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPE-T-QDATYLWW  145 (642)
T ss_pred             CcEEECCCCcc-cCcEEEEEEEcCC--CeEEEEEEEEEecccCCCCcEEccCceeEecCCcEEEEEECC-C-CCeeEEEE
Confidence            47999999999 9999999998742  233355677888877777777543445788899999999986 4 88999998


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       146 ~~  147 (642)
T 1e07_A          146 VN  147 (642)
T ss_pred             EC
Confidence            74

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.22  E-value=2.6e-11  Score=74.74  Aligned_cols=90  Identities=20%  Similarity=0.218  Sum_probs=58.0

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCC---CCeeeEeeEEEEEECC---CCCCEEe--CCCCceecCCCcE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGS---GQDLHSQVYTVTVLTP---PQPPKIS--PGANPVATEGRAI   77 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~---~~~~~~~~~~l~v~~~---~~~p~i~--~~~~~~~~~g~~~   77 (98)
                      |+.+....... |+|.+++.+ |+|.|+|.+.+...   ..........|.|...   ..+|.+.  ......+.+|..+
T Consensus        65 R~~~~~~~~~~-L~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~  142 (253)
T 3to4_D           65 DYLATRVTDTE-LRLQVANMS-QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKA  142 (253)
T ss_dssp             EEEEECCSSSC-CEEEEESCS-SCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEE
T ss_pred             cEEEEeCCCCe-EEEccCChh-hCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCce
Confidence            55554444334 999999999 99999999986422   1123333456777642   2344442  1122234456889


Q ss_pred             EEEEEcCCCCCCC-eEEEEec
Q psy5866          78 ELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        78 ~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      .|.|.+.+..|.+ .+.|+++
T Consensus       143 ~L~C~~~g~~P~~i~v~W~k~  163 (253)
T 3to4_D          143 TLVCLATGFYPDHVELSWWVN  163 (253)
T ss_dssp             EEEEEEEEEBSSCEEEEEEET
T ss_pred             EEEEEEceEECCcEEEEEEEC
Confidence            9999998667777 8999875

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.22  E-value=3.3e-11  Score=74.77  Aligned_cols=81  Identities=20%  Similarity=0.266  Sum_probs=58.1

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      ....+..+|+|.+++.. |+|.|+|.+.+.   ....+..+.|.|..++.+ .........+.+|+.+.|.|.+.+ .+.
T Consensus        45 ~~~~~~~~L~i~~~~~~-d~G~Y~C~~~~~---~~~~~~~~~l~V~~~~~~-~~~~~~~~~v~~g~~v~L~C~~~~-~~~  118 (289)
T 3ejj_X           45 DPESPGSTLTTRNATFK-NTGTYRCTELED---PMAGSTTIHLYVKDPAHS-WNLLAQEVTVVEGQEAVLPCLITD-PAL  118 (289)
T ss_dssp             CCCSSCCEEEESSCCGG-GCEEEEEECCC--------CEEEEEEECCSSCS-EEESCSEEEEETTSCEEECEEESC-GGG
T ss_pred             eccCCccEEEEeeeccc-cCEEEEEEEecc---CCcceeEEEEEEeCCCcc-eecccceEEEecCCceEeEEEccC-CCc
Confidence            34445578999999999 999999998874   233566678888766554 333335678999999999999974 444


Q ss_pred             C-eEEEEe
Q psy5866          90 P-QISVTL   96 (98)
Q Consensus        90 ~-~~~W~~   96 (98)
                      + .+.|++
T Consensus       119 ~~~v~W~~  126 (289)
T 3ejj_X          119 KDSVSLMR  126 (289)
T ss_dssp             GGSEEEEE
T ss_pred             ceEEEEEe
Confidence            4 499985

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.22  E-value=4.2e-11  Score=77.32  Aligned_cols=75  Identities=25%  Similarity=0.401  Sum_probs=58.6

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      .+|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..+|.  .+.......+.+|+.+.|.|.+. |.|.|.+.|+
T Consensus       275 ~~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~~~p~--~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~v~W~  347 (404)
T 3p3y_A          275 KALRITNVSEE-DSGEYFCLASNK---MGSIRHTISVRVKAAPY--WLDEPKNLILAPGEDGRLVCRAN-GNPKPTVQWM  347 (404)
T ss_dssp             TEEEESSCCGG-GCEEEEEEEECS---SCEEEEEEEEEEEEEEE--EEECCCCEEECTTCCEEEECEEE-EESCCEEEEE
T ss_pred             ceEEEccCCHh-HCEEEEEEEEeC---CCcEEEEEEEEEeCCCe--eeccCCcceeecCCcEEEEEEcc-ccCCCceEEE
Confidence            36999999999 999999999985   34455667777764432  22333457788999999999985 7899999999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       348 ~~  349 (404)
T 3p3y_A          348 VN  349 (404)
T ss_dssp             ET
T ss_pred             EC
Confidence            75

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.22  E-value=8.6e-11  Score=72.64  Aligned_cols=85  Identities=19%  Similarity=0.178  Sum_probs=54.8

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEECCC--------CCeeeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEE
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAAGS--------GQDLHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIE   78 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~--------~~~~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~   78 (98)
                      .+...+.++|+|.+++.+ |+|.|.|.+.+...        ..........+.|.. ++.+|.+. ..+...+.+|+.+.
T Consensus        95 ~~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~  173 (256)
T 3sob_H           95 ADTSKNTAYLQMNSLRAE-DTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAA  173 (256)
T ss_dssp             EEGGGTEEEEEECSCCGG-GCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEE
T ss_pred             EeCCCCEEEEEECCCCcc-cCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEE
Confidence            344567889999999999 99999999986310        011233345677753 33455553 22334567899999


Q ss_pred             EEEEcCCCCC-CCeEEE
Q psy5866          79 LVCSTSGGSP-DPQISV   94 (98)
Q Consensus        79 l~C~~~~~~p-~~~~~W   94 (98)
                      |.|.+.++.| .+.+.|
T Consensus       174 L~C~~~~~~p~~~~v~W  190 (256)
T 3sob_H          174 LGCLVKDYFPEPVTVSW  190 (256)
T ss_dssp             EEEEEEEEBSSCCEEEE
T ss_pred             EEEEEEEEECCCeEEEE
Confidence            9999986666 457899

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.21  E-value=6e-11  Score=73.67  Aligned_cols=78  Identities=27%  Similarity=0.428  Sum_probs=56.2

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|.|.+++.. |+|.|+|.+.+... .......+.+.|..+|............+.+|+.+.|.|.+. |.|.|.+.|++
T Consensus       154 ~L~i~~v~~~-d~G~Y~C~~~n~~~-~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~v~W~~  230 (291)
T 2wim_A          154 NLQILNINKS-DEGIYRCEGRVEAR-GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFR  230 (291)
T ss_dssp             CEEETTCCGG-GCEEEEEEEEETTT-TEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCC-CBSCCEEEEEE
T ss_pred             CEEEEecchh-hCEEEEEEEEECCC-CeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEee-cCCCCeEEEEE
Confidence            5999999999 99999999998643 233344566666655543211111134678899999999985 78999999997


Q ss_pred             c
Q psy5866          97 Q   97 (98)
Q Consensus        97 ~   97 (98)
                      +
T Consensus       231 ~  231 (291)
T 2wim_A          231 N  231 (291)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.21  E-value=5.5e-11  Score=76.52  Aligned_cols=77  Identities=22%  Similarity=0.379  Sum_probs=59.9

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS   93 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~   93 (98)
                      ....|.|.+++.+ |+|.|+|.+.+.   .......+.|.|..+|.  .+.......+.+|+.+.|.|.+. |.|.|.+.
T Consensus       255 ~~~~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~~~p~--~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~v~  327 (382)
T 1cs6_A          255 SEPLLHIQNVDFE-DEGTYECEAENI---KGRDTYQGRIIIHAQPD--WLDVITDTEADIGSDLRWSCVAS-GKPRPAVR  327 (382)
T ss_dssp             SSSEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEEEEE--EEECCCCEEEETTCCEEEECEEE-EESCCEEE
T ss_pred             CCcEEEEccCChh-hCEEEEEEEEcC---CCeEEEEEEEEEecCCC--cccCCCccEEcCCCeEEEEEEee-eecCCEEE
Confidence            4457999999999 999999999985   44556667777764443  22223456788999999999985 78999999


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |+++
T Consensus       328 W~~~  331 (382)
T 1cs6_A          328 WLRD  331 (382)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9975

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.20  E-value=1.6e-10  Score=69.13  Aligned_cols=77  Identities=21%  Similarity=0.344  Sum_probs=60.9

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC--e
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP--Q   91 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~--~   91 (98)
                      +...+.|++++ . | |.|.|.+...   ....+..+.|.|+.+|..+.|.. ....+.+|+.++|+|.+.++.|.+  +
T Consensus        48 ~~~~l~l~~vs-~-~-g~y~C~~~c~---~~~~~~~~~l~V~~~P~~v~i~~-~~~~~~~G~~~tL~C~v~g~~P~~~l~  120 (185)
T 1iam_A           48 NRKVYELSNVQ-E-D-SQPMCYSNCP---DGQSTAKTFLTVYWTPERVELAP-LPSWQPVGKQLTLRCQVEGGAPRAQLT  120 (185)
T ss_dssp             SEEEEEEEEEC-S-C-BCCEEEEECS---SCEEEEECEEEEEBCCSEEEECC-CCSEECTTSEEEEEEEEECCBCGGGEE
T ss_pred             ceeEEEEEecC-c-C-CEEEEEEECC---CCceEEEEEEEEeCCCCCCEEcc-CCccccCCCcEEEEEEcCCccCCCCcE
Confidence            33458899996 4 5 9999998763   34677788999999988877764 335699999999999999888875  5


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      ++|+++
T Consensus       121 i~w~kg  126 (185)
T 1iam_A          121 VVLLRG  126 (185)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            899975

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.20  E-value=7.1e-11  Score=74.78  Aligned_cols=79  Identities=23%  Similarity=0.421  Sum_probs=61.1

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC-CCCEEeC--CCCceecCCCcEEEEEEcCCCCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP-QPPKISP--GANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~-~~p~i~~--~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      .+..+|.|.+++.+ |+|.|+|.+.+.   .......+.|.|...+ ..|.+..  .....+.+|+.+.|.|.+. |.|.
T Consensus       177 ~~~~~L~i~~v~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~-g~p~  251 (334)
T 1ry7_B          177 HQQWSLVMESVVPS-DRGNYTCVVENK---FGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY-SDAQ  251 (334)
T ss_dssp             TTTTEEEECSCCGG-GCCCEEEEEEET---TEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCB-CSSC
T ss_pred             cceEEEEECCCCcc-cCEEEEEEEEeC---CCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEe-cCCC
Confidence            34558999999999 999999999985   4555666788887543 3344421  2456788999999999985 7899


Q ss_pred             CeEEEEe
Q psy5866          90 PQISVTL   96 (98)
Q Consensus        90 ~~~~W~~   96 (98)
                      |.+.|++
T Consensus       252 p~v~W~~  258 (334)
T 1ry7_B          252 PHIQWLK  258 (334)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEE
Confidence            9999998

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.20  E-value=9.1e-11  Score=69.15  Aligned_cols=80  Identities=23%  Similarity=0.387  Sum_probs=56.0

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC----CCCCEE-eCCCCceecCCCcEEEEEEcCCCCCCC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP----PQPPKI-SPGANPVATEGRAIELVCSTSGGSPDP   90 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~----~~~p~i-~~~~~~~~~~g~~~~l~C~~~~~~p~~   90 (98)
                      .+|.|.+++.+ |+|.|+|.+.+...........+.+.+...    +.+|.+ .......+.+|+.+.|.|.+. +.|.+
T Consensus        66 ~~L~i~~v~~~-d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p  143 (201)
T 3s97_C           66 GNLYIANVEAS-DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFAL-GNPVP  143 (201)
T ss_dssp             CCEEESSCCGG-GCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEE-EESCC
T ss_pred             CeEEECcCCcc-cCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEcc-CCCCC
Confidence            46999999999 999999999985332233333345444422    122333 222467788999999999985 78999


Q ss_pred             eEEEEec
Q psy5866          91 QISVTLQ   97 (98)
Q Consensus        91 ~~~W~~~   97 (98)
                      .+.|+++
T Consensus       144 ~v~W~~~  150 (201)
T 3s97_C          144 DIRWRKV  150 (201)
T ss_dssp             EEEEEET
T ss_pred             ceEEEeC
Confidence            9999975

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.20  E-value=5.3e-11  Score=69.87  Aligned_cols=75  Identities=24%  Similarity=0.311  Sum_probs=55.2

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      .|.|.+++.. |+|.|+|.+.+..+  ...+....+.|..+|.  .........+.+|+.+.|.|.+. +.|.+.+.|++
T Consensus        63 ~L~i~~~~~~-d~G~Y~C~~~~~~~--~~~~~~~~l~v~~~p~--~~~~~~~~~~~~g~~~~l~C~~~-g~p~~~v~W~~  136 (192)
T 2iep_A           63 LLTILSVEDS-DDGIYCCTANNGVG--GAVESCGALQVKMKPK--ITRPPINVKIIEGLKAVLPCTTM-GNPKPSVSWIK  136 (192)
T ss_dssp             EEEESSCCGG-GCEEEEEEEECSSS--CCEEEEEEEEEEEEEE--EEECCCCEEEETTSCEEECCEEE-EESCCEEEEEE
T ss_pred             EEEEcCCCcc-cCeEEEEEEEcCCC--ceeEeEEEEEEEeCCc--cccCCcceEEeCCCcEEEEEEEe-ccCCceEEEEe
Confidence            5999999999 99999999998532  2233445666654433  12222456788999999999985 78889999997


Q ss_pred             c
Q psy5866          97 Q   97 (98)
Q Consensus        97 ~   97 (98)
                      +
T Consensus       137 ~  137 (192)
T 2iep_A          137 G  137 (192)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.19  E-value=2.1e-10  Score=71.19  Aligned_cols=78  Identities=23%  Similarity=0.400  Sum_probs=58.4

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC-CCCCEEe-CCCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP-PQPPKIS-PGANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~-~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      .|.|.+++.+ |+|.|+|.+.+.  .....+..+.|.|... +.+|.+. ......+.+|+.+.|.|.+.++.|.+.+.|
T Consensus       145 ~L~i~~v~~~-d~G~Y~C~a~~~--~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W  221 (289)
T 3ejj_X          145 GFIIRKAKVL-DSNTYVCKTMVN--GRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVIL  221 (289)
T ss_dssp             EEEESSCCGG-GCEEEEEEEEET--TEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEE
T ss_pred             CEEEeecccc-cCEEEEEEEEeC--CCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEE
Confidence            5999999999 999999999853  2345556678888742 2345542 223455679999999999975488999999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       222 ~~~  224 (289)
T 3ejj_X          222 KRG  224 (289)
T ss_dssp             EET
T ss_pred             EEC
Confidence            875

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.19  E-value=6.1e-11  Score=76.62  Aligned_cols=74  Identities=31%  Similarity=0.490  Sum_probs=58.6

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..+|.  .+.......+.+|+.+.|.|.+. |.|.|.+.|++
T Consensus       276 ~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~~~p~--~~~~~~~~~~~~g~~v~l~C~~~-g~p~p~v~W~~  348 (403)
T 3laf_A          276 NLLISNVTDD-DSGTYTCVVTYK---NENISASAELTVLVPPW--FLNHPSNLYAYESMDIEFECAVS-GKPVPTVNWMK  348 (403)
T ss_dssp             EEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEEEEE--EEECCCCEECCTTCCEEECCEEE-EESCCEEEEEE
T ss_pred             EEEEeCCCHH-HCEEEEEEEEcC---CCceEEEEEEEEECCCc--EeecCcceEEecCCeEEEEEEEe-eccCCEEEEEE
Confidence            6999999999 999999999985   45566677888865443  22223456788999999999985 78999999997


Q ss_pred             c
Q psy5866          97 Q   97 (98)
Q Consensus        97 ~   97 (98)
                      +
T Consensus       349 ~  349 (403)
T 3laf_A          349 N  349 (403)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.19  E-value=2e-10  Score=77.63  Aligned_cols=79  Identities=14%  Similarity=0.266  Sum_probs=58.8

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCC---CCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSG---GSP   88 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~---~~p   88 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+ +.   ....+..+.|.|...+  |.+.......+.+|+.+.|.|.+..   +.|
T Consensus       402 ~~g~~~L~I~~v~~~-D~G~Y~C~a-n~---~g~~~~~~~l~V~~~~--p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p  474 (585)
T 2ocw_A          402 GNGTFTVILNQLTSR-DAGFYWCLT-NG---DTLWRTTVEIKIIEGE--PNLKVPGNVTAVLGETLKVPCHFPCKFSSYE  474 (585)
T ss_pred             CCcEEEEEECCCChh-hCEEEEEcc-cC---CCccceeEEEEEecCc--cccccCCceeEecCCcEEEEEEecCCCCCCc
Confidence            456677999999999 999999988 53   3444556777776443  2332235578999999999999852   677


Q ss_pred             CCeEEEEec
Q psy5866          89 DPQISVTLQ   97 (98)
Q Consensus        89 ~~~~~W~~~   97 (98)
                      .+.+.|+++
T Consensus       475 ~~~v~W~k~  483 (585)
T 2ocw_A          475 KYWCKWNNT  483 (585)
T ss_pred             cEEEEEeec
Confidence            889999975

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.19  E-value=1.2e-10  Score=69.38  Aligned_cols=80  Identities=16%  Similarity=0.272  Sum_probs=55.4

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      .++++|+|.+++.+ |+|.|+|.+.+..  .........+.+..++..+...  .......+....+.|.+..+.|++.+
T Consensus        80 ~~~~sL~I~~v~~~-D~G~Y~C~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~c~~~~~~P~~~~  154 (225)
T 4fmk_A           80 LRDATLAFRGLRVE-DEGNYTCEFATFP--NGTRRGVTWLRVIAQPENHAEA--QEVTIGPQSVAVARCVSTGGRPPARI  154 (225)
T ss_dssp             CCBCCEEECSCCGG-GCEEEEEEEEEET--TEEEEEEEEEEEEBCCEEEEEE--CCBCCSSSCEEEEEEEEEEEBSCCEE
T ss_pred             cCcEEEEEccCCHH-HCcceEEEEEeCC--CcceeeeeeeeeecCCceeecc--cceeecceeeeeeeeeecCCCCCCEE
Confidence            45678999999999 9999999998852  2333333445554444332222  33456677778888887778899999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       155 ~w~~~  159 (225)
T 4fmk_A          155 TWISS  159 (225)
T ss_dssp             EEECS
T ss_pred             EEEEC
Confidence            99864

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.19  E-value=3.2e-11  Score=71.75  Aligned_cols=76  Identities=17%  Similarity=0.274  Sum_probs=53.3

Q ss_pred             EEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        18 l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      |.|.+++.. |+|.|+|.+.+..+  ...+..+.|.|...+...... .....+.+|+.+.|.|.+..+.|.+.+.|+++
T Consensus        74 l~i~~~~~~-d~G~Y~C~~~n~~g--~~~~~~~~l~V~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~  149 (212)
T 2v9r_A           74 IVHGRKSRP-DEGVYVCVARNYLG--EAVSHDASLEVAILRDDFRQN-PSDVMVAVGEPAVMECQPPRGHPEPTISWKKD  149 (212)
T ss_dssp             CCCCSSCCC-SCEEEEEEEEETTE--EEECCCEEEEECEECSSCSBC-CCCEEEETTSCEEEECBCCCEESCCEEEEEET
T ss_pred             EEecCCCcc-cCeEEEEEEECCCC--ceeecceEEEEEeccccceeC-CCceEecCCCcEEEEEecCCCCCCCEEEEEEC
Confidence            455678999 99999999998521  222345566665433221222 24567889999999999856889999999975

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.18  E-value=3e-11  Score=77.85  Aligned_cols=76  Identities=18%  Similarity=0.405  Sum_probs=56.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCC-ceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGAN-PVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~-~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      ..|.|.+++.+ |+|.|+|.+.+..+  ...+..+.|.|..+|..  ...... ..+.+|+.+.|.|.+. |.|.|.+.|
T Consensus       270 ~~L~i~~~~~~-d~G~Y~C~a~n~~g--~~~~~~~~l~V~~~P~~--~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~v~W  343 (395)
T 1bih_A          270 KRLLFKTTLPE-DEGVYTCEVDNGVG--KPQKHSLKLTVVSAPKY--EQKPEKVIVVKQGQDVTIPCKVT-GLPAPNVVW  343 (395)
T ss_dssp             SEEEESSCCGG-GCEEEEEEECCSSS--SCEEEEEEEEEEEEEEE--EECCCSEEEECTTSCEEEECEEE-EESCCCCEE
T ss_pred             ceEEEccCChh-hCEEEEEEEEeCCC--CceEEEEEEEEEcCCcc--ccCCCcceEecCCCeEEEEEEEC-cccCCeeEE
Confidence            37999999999 99999999998532  22333677777644431  222233 5789999999999986 789999999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       344 ~~~  346 (395)
T 1bih_A          344 SHN  346 (395)
T ss_dssp             EET
T ss_pred             EEC
Confidence            975

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.17  E-value=2.8e-11  Score=75.21  Aligned_cols=78  Identities=26%  Similarity=0.421  Sum_probs=55.0

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      .|.|.+++.. |+|.|+|.+.+... .......+.+.|..+|............+.+|+.+.|.|.+. |.|.|.+.|++
T Consensus       156 ~L~i~~~~~~-d~G~Y~C~a~n~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~  232 (291)
T 1qz1_A          156 YLQIRGIKKT-DEGTYRCEGRILAR-GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTK  232 (291)
T ss_dssp             CEEETTCCGG-GCEEEEEEEEEGGG-TEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEE-EESCCEEEEEE
T ss_pred             cEEEccCccc-cCeEEEEEEEecCC-CceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEE-EeCCCcEEEEE
Confidence            6999999999 99999999998532 223344556666544322111111134678999999999986 78999999997


Q ss_pred             c
Q psy5866          97 Q   97 (98)
Q Consensus        97 ~   97 (98)
                      +
T Consensus       233 ~  233 (291)
T 1qz1_A          233 D  233 (291)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.17  E-value=4.9e-10  Score=68.49  Aligned_cols=77  Identities=22%  Similarity=0.308  Sum_probs=58.0

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC-Ce---
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD-PQ---   91 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~-~~---   91 (98)
                      ..|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|...+.+|.+.......+.+|+.+.|.|.+. +.|. +.   
T Consensus       131 ~~l~i~~~~~~-d~G~Y~C~~~n~---~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~-~~p~~p~~~~  205 (262)
T 3rjd_A          131 SNLTILKTNIS-HNGTYHCSGMGK---HRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETK-LLLQRPGLQL  205 (262)
T ss_dssp             CCEEESSCCGG-GCEEEEEEEESS---SEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECC-CCCC-----E
T ss_pred             CeEEEEECChh-hCEEEEEEEeCC---CCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcc-cCCCCCCccE
Confidence            35899999999 999999999885   456666678888766566666444456788999999999986 5554 43   


Q ss_pred             -EEEEec
Q psy5866          92 -ISVTLQ   97 (98)
Q Consensus        92 -~~W~~~   97 (98)
                       +.|+++
T Consensus       206 ~~~w~~~  212 (262)
T 3rjd_A          206 YFSFYMG  212 (262)
T ss_dssp             EEEEEET
T ss_pred             EEEEEeC
Confidence             667654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.17  E-value=8e-11  Score=70.82  Aligned_cols=77  Identities=17%  Similarity=0.231  Sum_probs=51.1

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE--eCCCCceecCCCcEEEEEEcCCC-CCCCeEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI--SPGANPVATEGRAIELVCSTSGG-SPDPQIS   93 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~-~p~~~~~   93 (98)
                      .|.|.+++.+ |+|.|+|.+.+..  ....+..+.|.|.. +..|.+  .+.....+.+|+.+.|.|.+.+. .+.+.+.
T Consensus        65 ~l~I~~v~~~-D~G~Y~C~a~n~~--~~~~s~~~~l~v~~-~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~  140 (213)
T 2x1w_L           65 GFTIPSYMIS-YAGMVFCEAKIND--ESYQSIMYIVVVVG-YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN  140 (213)
T ss_dssp             EEEEEGGGTT-TCSEEEEEEC------CEECCCEEEEECB-CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEE
T ss_pred             cEEEccCChh-cCceEEEEEEECC--eeEEEEEEEEEEeC-CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEE
Confidence            5999999999 9999999998731  23333336666643 223322  33233488999999999998622 3345799


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |++.
T Consensus       141 W~~~  144 (213)
T 2x1w_L          141 WEYP  144 (213)
T ss_dssp             EECS
T ss_pred             EEec
Confidence            9864

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.17  E-value=3.8e-11  Score=76.53  Aligned_cols=81  Identities=20%  Similarity=0.347  Sum_probs=49.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCe-eeEeeEEEEEECCCC---CCEEeCCCC---ceecCCCcEEEEEEcCC---
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQD-LHSQVYTVTVLTPPQ---PPKISPGAN---PVATEGRAIELVCSTSG---   85 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~~~~---~p~i~~~~~---~~~~~g~~~~l~C~~~~---   85 (98)
                      ..|.|.+++.+ |+|.|+|.+.+...+.. ..+..+.+.|..++.   +|.+.....   ..+.+|+.+.|.|.+..   
T Consensus       177 ~~L~i~~v~~~-d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~  255 (349)
T 4dep_C          177 MNLSFLIALIS-NNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFL  255 (349)
T ss_dssp             TEEEEESCCGG-GCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCC
T ss_pred             CEEEEeeeeec-CCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccC
Confidence            36999999999 99999999998532111 235666777765432   456632221   17889999999999864   


Q ss_pred             CCCCCeEEEEec
Q psy5866          86 GSPDPQISVTLQ   97 (98)
Q Consensus        86 ~~p~~~~~W~~~   97 (98)
                      +.|.|.+.|+++
T Consensus       256 g~p~p~v~W~~~  267 (349)
T 4dep_C          256 MDSRNEVWWTID  267 (349)
T ss_dssp             TTCCCEEEEESS
T ss_pred             CCCCCEEEEEEC
Confidence            468899999864

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.17  E-value=1.8e-10  Score=77.14  Aligned_cols=79  Identities=18%  Similarity=0.241  Sum_probs=60.6

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEEEEcCCCCCCCe-
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELVCSTSGGSPDPQ-   91 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~C~~~~~~p~~~-   91 (98)
                      ....|.|.+++.+ |+|.|+|.+.+.   .......+.|.|..+|....... .....+.+|+.+.|.|.+ .|.|.|. 
T Consensus       271 ~~~~L~I~~~~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~-~g~P~p~~  345 (524)
T 2ec8_A          271 RQATLTISSARVN-DSGVFMCYANNT---FGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEY-EAFPKPEH  345 (524)
T ss_dssp             EEEEEEESSCCTT-TCEEEEEEEECS---SCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEE-EEESCCCE
T ss_pred             eEEEEEECCCCHH-HCEEEEEEEEec---CCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEE-eecCCCcE
Confidence            4568999999999 999999999885   34455577888875554322221 134688999999999998 4789898 


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       346 v~W~k~  351 (524)
T 2ec8_A          346 QQWIYM  351 (524)
T ss_dssp             EEEESS
T ss_pred             EEEEEC
Confidence            999975

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.16  E-value=2e-10  Score=72.50  Aligned_cols=80  Identities=15%  Similarity=0.215  Sum_probs=58.2

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCC--CeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSG--QDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~--~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      ...|.|.+++.+ |+|.|+|.+.+....  ....+..+.|.|...+.+|.+...+...+.+|+.+.|.|.+.  .+.+.+
T Consensus        73 ~~~L~I~~v~~~-D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~--~~~~~~  149 (316)
T 3vh8_G           73 QESFNMSPVTTA-HAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSD--IMFEHF  149 (316)
T ss_dssp             SSCEEECSCCGG-GCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEES--SCCSEE
T ss_pred             eEEEEECCCCcc-cCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCC--CCCcEE
Confidence            456999999999 999999999764221  123445577888766666666433344588999999999984  356789


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       150 ~w~k~  154 (316)
T 3vh8_G          150 FLHKE  154 (316)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99875

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.15  E-value=2.7e-11  Score=82.02  Aligned_cols=73  Identities=14%  Similarity=0.132  Sum_probs=54.5

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC-CCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP-GANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      .+|.|.+++.+ |+|.|+|.+.+    .  .+..+.|.|..+|.. .+.+ .....+.+|+.+.|.|.+. |.|.|.+.|
T Consensus       290 ~~L~I~~v~~~-DsG~Y~C~a~N----~--~~~~~~L~V~~~p~i-~~~~~~~~~~v~~G~~v~L~C~~~-g~P~p~i~W  360 (527)
T 3qs9_E          290 LFAFVSSVARN-DTGYYTCSSSK----H--PSQSALVTIVEKGFI-NATNSSEDYEIDQYEEFCFSVRFK-AYPQIRCTW  360 (527)
T ss_dssp             EEEEESSCCGG-GCEEEEEEETT----E--EEEEEEEEEC--CEE-ECCCSCCEECCCTTCCCCEEEEEE-EESCCEEEE
T ss_pred             EEEEEccCCcc-cCeEEEEEEEe----C--CCceEEEEEEccCcc-ccccCcccEEEcCCCeEEEEEEEE-ecCCCEEEE
Confidence            45999999999 99999999987    2  566677888654421 1111 1235678899999999985 789999999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       361 ~k~  363 (527)
T 3qs9_E          361 TFS  363 (527)
T ss_dssp             EET
T ss_pred             EEC
Confidence            975

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.14  E-value=1.5e-10  Score=76.47  Aligned_cols=75  Identities=13%  Similarity=0.190  Sum_probs=51.2

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      ..+|.|.+++.+ |+|.|+|.+.|.   ....+..+.|.|..+|   .+..........|..+.|.|.+. |.|.|.++|
T Consensus       102 ~~sL~I~~v~~~-D~G~Y~C~a~N~---~g~~~~~~~l~V~~~p---~~~~~~p~~~~~~~~~~L~C~a~-G~P~P~i~W  173 (423)
T 3qs7_E          102 VVSMVILKMTET-QAGEYLLFIQSE---ATNYTILFTVSIRNTL---LYTLRRPYFRKMENQDALVCISE-SVPEPIVEW  173 (423)
T ss_dssp             EEEEEESSCCSS-SCSEEEEEEEC-----CEEEEEEEEEEC--------CEEEEEEEECSSSSCEEEEEE-ESSCCEEEE
T ss_pred             EEEEEEeecCcc-cCEEEEEEEEcC---CCcEEEEEEEEEecCc---cccccCCcEeccCCceEEEEEEe-eecCCeEEE
Confidence            457999999999 999999999985   3444556677775333   22111112344577778999985 899999999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      ++.
T Consensus       174 ~k~  176 (423)
T 3qs7_E          174 VLC  176 (423)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            874

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.14  E-value=3.7e-10  Score=71.94  Aligned_cols=77  Identities=14%  Similarity=0.232  Sum_probs=56.8

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCE--EeCCCCceecCCCcEEEEEEcC----CCCCCC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPK--ISPGANPVATEGRAIELVCSTS----GGSPDP   90 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~--i~~~~~~~~~~g~~~~l~C~~~----~~~p~~   90 (98)
                      +|.|.+++.+ |+|.|+|.+.+.   .......+.|.|..++....  +.......+.+|+.+.|.|.+.    .+.|.+
T Consensus        80 ~L~i~~~~~~-D~G~Y~C~a~n~---~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~  155 (349)
T 4dep_C           80 VLWFRPTLLN-DTGNYTCMLRNT---TYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKP  155 (349)
T ss_dssp             EEEESSCCGG-GCEEEEEEEECS---SCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCC
T ss_pred             EEEEccCChh-hCEEEEEEEecC---CceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCc
Confidence            6999999999 999999999985   34455567888876543211  1111234678999999999852    367899


Q ss_pred             eEEEEec
Q psy5866          91 QISVTLQ   97 (98)
Q Consensus        91 ~~~W~~~   97 (98)
                      .+.|+++
T Consensus       156 ~v~W~k~  162 (349)
T 4dep_C          156 TITWYMG  162 (349)
T ss_dssp             EEEEEET
T ss_pred             eEEEeeC
Confidence            9999975

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.13  E-value=2.1e-10  Score=69.79  Aligned_cols=84  Identities=20%  Similarity=0.190  Sum_probs=55.3

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCC------CeeeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSG------QDLHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIELVC   81 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~------~~~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~l~C   81 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+....      .........|.|.. +..+|.+. ..+.....+|..+.|.|
T Consensus        73 ~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C  151 (226)
T 3mlr_H           73 DKSISTAYLQWTTLQAS-DTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGC  151 (226)
T ss_dssp             EGGGTEEEEEESSCCGG-GCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEE
T ss_pred             cCCCCEEEEEECCCCcc-cCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEE
Confidence            34457889999999999 999999999763100      01112234666643 23445552 11223456889999999


Q ss_pred             EcCCCCC-CCeEEE
Q psy5866          82 STSGGSP-DPQISV   94 (98)
Q Consensus        82 ~~~~~~p-~~~~~W   94 (98)
                      .+.+..| .+.+.|
T Consensus       152 ~~~~~~p~~~~v~W  165 (226)
T 3mlr_H          152 LVKDYFPEPVTVSW  165 (226)
T ss_dssp             EEEEEBSSCCEEEE
T ss_pred             EEEEEECCCeEEEE
Confidence            9987666 567999

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.13  E-value=4.9e-10  Score=75.45  Aligned_cols=91  Identities=19%  Similarity=0.333  Sum_probs=58.8

Q ss_pred             EEEEe--CCCCeEEEEEccceeeccCeEEEEEEEECCC----------CCeeeEeeEEEEEEC-CCCCCEEeCCCCc-e-
Q psy5866           6 IIDYR--PDSGRYDLIISNASFERDNGKFECRLKAAGS----------GQDLHSQVYTVTVLT-PPQPPKISPGANP-V-   70 (98)
Q Consensus         6 ~~~~~--~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~----------~~~~~~~~~~l~v~~-~~~~p~i~~~~~~-~-   70 (98)
                      |+.+.  ...+.++|+|++++.+ |+|.|+|.+.+...          ..........|.|.. ++..|.+...... . 
T Consensus        68 R~~~~~~~~~~~~sL~I~~v~~~-Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~  146 (512)
T 1zvo_C           68 RVTISVDTSRNQFSLNLRSMSAA-DTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRH  146 (512)
T ss_pred             ceEEEecCCCCEEEEEECcCCHH-HCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCccc
Confidence            44433  3456799999999999 99999999987421          001122345677763 3345555311111 1 


Q ss_pred             ecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      ...++.+.|.|.+.++.|.+ .++|+++
T Consensus       147 ~~~~~~v~L~C~~~g~~P~p~~v~W~~~  174 (512)
T 1zvo_C          147 PKDNSPVVLACLITGYHPTSVTVTWYMG  174 (512)
T ss_pred             ccCCCeEEEEEEEEeeecCceEEEEEcC
Confidence            23468899999998666765 8999864

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.12  E-value=2.1e-10  Score=69.06  Aligned_cols=78  Identities=22%  Similarity=0.280  Sum_probs=52.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCC--------CCeeeEeeEEEEEECC---CCCCEEeCCCCceecCCCcEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGS--------GQDLHSQVYTVTVLTP---PQPPKISPGANPVATEGRAIELV   80 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~--------~~~~~~~~~~l~v~~~---~~~p~i~~~~~~~~~~g~~~~l~   80 (98)
                      ..+.++|+|.+++.+ |+|.|.|.+.+...        ..........|.|...   +..|.+..      ..+ .+.|.
T Consensus        67 ~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~------~~~-~~~l~  138 (207)
T 1ypz_E           67 ERRYSTLHIRDAQLE-DSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFI------MKN-GTNVA  138 (207)
T ss_dssp             TCSEEEEEECSCCGG-GCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEE------EEE-TTEEE
T ss_pred             CCCEEEEEECCCCHH-HCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEE------eCC-CCeEE
Confidence            377899999999999 99999999987421        0111223457788642   23444421      111 26899


Q ss_pred             EEcCCCCCC-CeEEEEec
Q psy5866          81 CSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        81 C~~~~~~p~-~~~~W~~~   97 (98)
                      |.+.+..|. +.+.|+++
T Consensus       139 C~~~g~~P~~~~v~W~~~  156 (207)
T 1ypz_E          139 CLVKDFYPKEVTISLRSS  156 (207)
T ss_dssp             EEEEEESSSCCEEEEECS
T ss_pred             EEEeeEeCCCeEEEEecC
Confidence            999866775 79999874

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.12  E-value=1.2e-09  Score=67.97  Aligned_cols=77  Identities=19%  Similarity=0.279  Sum_probs=58.0

Q ss_pred             EEEEccceeeccCe-EEEEEEEECCCCCeeeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEEEEEEcCCCCCCCe-E
Q psy5866          17 DLIISNASFERDNG-KFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIELVCSTSGGSPDPQ-I   92 (98)
Q Consensus        17 ~l~I~~v~~~~d~G-~y~C~~~~~~~~~~~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~~~-~   92 (98)
                      .|.|.+++.+ |+| .|+|.+.+.  .....+..+.|.|.. ...+|.+. ......+.+|+.+.|.|.+. |.|.|. +
T Consensus       146 ~L~i~~v~~~-d~G~~Y~C~a~n~--~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~-g~p~p~~i  221 (290)
T 2o26_X          146 GITIKNVKRA-YHRLCVRCAAQRD--GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIK-DVSTSVNS  221 (290)
T ss_dssp             EEEEESCCGG-GTTCEEEEEEEET--TEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEE-ESSTTCEE
T ss_pred             CEEEecccHH-HCCCEEEEEEEEC--CceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEe-cCCcceeE
Confidence            6999999999 999 999999985  123334457777763 33455552 22445889999999999997 788886 9


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       222 ~W~~~  226 (290)
T 2o26_X          222 MWLKM  226 (290)
T ss_dssp             EEEEE
T ss_pred             EEecC
Confidence            99975

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.12  E-value=1.9e-09  Score=64.76  Aligned_cols=79  Identities=15%  Similarity=0.285  Sum_probs=63.3

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      ..+...+.|++++   |+|.|.|.+.-.   .......+.|+|+.+|..+.|... ...+.+|+.++|+|.+.++.|...
T Consensus        48 g~~w~~l~l~~vs---~~g~~~C~~~c~---~~~~~~~~~itVy~~P~~v~i~~~-p~~~~~G~~~tL~C~v~~v~P~~~  120 (192)
T 1zxq_A           48 QAQWKHYLVSNIS---HDTVLQCHFTCS---GKQESMNSNVSVYQPPRQVILTLQ-PTLVAVGKSFTIECRVPTVEPLDS  120 (192)
T ss_dssp             ETTEEEEEEEEEC---SCEEEEEEEEET---TEEEEEEEEEEECBCCCCCEEEEE-SSEECTTSEEEEEEEECSCBCGGG
T ss_pred             CCCeEEEEEeccc---cCCeeEEEEECC---CcceEEEEEEEEEeCCCCceEccC-CccccCCCcEEEEEEeCCeECCCC
Confidence            3444578999997   468899999873   466677899999999999988632 357889999999999998898765


Q ss_pred             --EEEEec
Q psy5866          92 --ISVTLQ   97 (98)
Q Consensus        92 --~~W~~~   97 (98)
                        +.|++.
T Consensus       121 L~v~llrG  128 (192)
T 1zxq_A          121 LTLFLFRG  128 (192)
T ss_dssp             EEEEEEET
T ss_pred             cEEEEEcC
Confidence              689874

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.11  E-value=1.8e-10  Score=66.62  Aligned_cols=73  Identities=19%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      ..+.|.+++.+ |+|.|+|.+.+.     ..+..+.|.|..++  +.+. .....+.+|+.+.|.|.+..+.|.+.+.|+
T Consensus        51 ~~~~~~~~~~~-d~G~Y~C~~~~~-----~~s~~~~l~v~~~~--~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~  121 (170)
T 3ry4_A           51 QPSYRFKANNN-DSGEYTCQTGQT-----SLSDPVHLTVLFEW--LVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFF  121 (170)
T ss_dssp             SSEEEEECCGG-GCEEEEEEETTS-----BCCCCEEEEEECCS--EEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEE
T ss_pred             cceEEEecccc-cCeEEEEEEeCC-----CceEeEEEEEECCc--eEec-CCCceeecCCeEEEEEECCCCCCCceEEEE
Confidence            34778899999 999999999852     23345677776533  2333 245678899999999998767778999999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       122 ~~  123 (170)
T 3ry4_A          122 QN  123 (170)
T ss_dssp             ET
T ss_pred             EC
Confidence            75

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.11  E-value=2e-10  Score=72.95  Aligned_cols=81  Identities=23%  Similarity=0.369  Sum_probs=59.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCC-eeeEeeEEEEEECCC--CCCEE-eCCCCceecCCCcEEEEEEcC--CCCC-
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQ-DLHSQVYTVTVLTPP--QPPKI-SPGANPVATEGRAIELVCSTS--GGSP-   88 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~-~~~~~~~~l~v~~~~--~~p~i-~~~~~~~~~~g~~~~l~C~~~--~~~p-   88 (98)
                      ..|.|.+++.+ |+|.|+|.+.+..+.. ...+..+.|.|...+  .+|.+ .......+.+|+.+.|.|.+.  .|.| 
T Consensus       180 ~~L~i~~v~~~-d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~  258 (339)
T 3o4o_C          180 THLLVHDVALE-DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPL  258 (339)
T ss_dssp             SEEEESSCCGG-GCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCS
T ss_pred             ceEEEcccCHh-hCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCC
Confidence            47999999999 9999999999863322 245666788887543  24555 323445788999999999982  3677 


Q ss_pred             CCeEEEEec
Q psy5866          89 DPQISVTLQ   97 (98)
Q Consensus        89 ~~~~~W~~~   97 (98)
                      .+.+.|+++
T Consensus       259 ~~~v~W~~~  267 (339)
T 3o4o_C          259 TTMLWWTAN  267 (339)
T ss_dssp             SCEEEEESS
T ss_pred             CceEEEEEC
Confidence            889999864

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.11  E-value=1e-11  Score=81.52  Aligned_cols=81  Identities=21%  Similarity=0.334  Sum_probs=56.0

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC-CCCCCEE-eCCCCceecCCCcEEEEEEcCCCCCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKI-SPGANPVATEGRAIELVCSTSGGSPDP   90 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~-~~~~p~i-~~~~~~~~~~g~~~~l~C~~~~~~p~~   90 (98)
                      .+.++|+|.+++.+ |+|.|+|.+.+.   .........|.|.. .+.+|.+ ...+...+.+|+.+.|.|.+.+..|.+
T Consensus        75 ~~~~~L~I~~v~~~-D~G~Y~C~~~~~---~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p  150 (434)
T 1igy_B           75 SNTANIHLSSLTSD-DSAVYYCVREGE---VPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP  150 (434)
T ss_dssp             GCBBCEEECSBCGG-GCSEECCCCSSS---SCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSC
T ss_pred             CCEEEEEECCCChH-HCEEEEEEEEcc---ccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCC
Confidence            34678999999999 999999999873   22223345677753 2233433 112334567899999999997555776


Q ss_pred             -eEEEEec
Q psy5866          91 -QISVTLQ   97 (98)
Q Consensus        91 -~~~W~~~   97 (98)
                       .+.|+++
T Consensus       151 ~~v~W~k~  158 (434)
T 1igy_B          151 VTVTWNSG  158 (434)
T ss_dssp             CEEEETTT
T ss_pred             eEEEEeeC
Confidence             9999864

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.11  E-value=3.4e-11  Score=74.37  Aligned_cols=82  Identities=20%  Similarity=0.267  Sum_probs=59.0

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCC-eeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQ-DLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~-~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      ....|.|..+..+ |.|.|+|.+.+...+. ...+..+.|.|..+|............+.+|+.+.|.|.+. |.|.|.+
T Consensus       140 ~~~~l~i~~~~~~-~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~-g~P~p~i  217 (265)
T 2oz4_A          140 PRAQLLLKATPED-NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW-GNPLPEL  217 (265)
T ss_dssp             SEECCEEECCGGG-TTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCE-EESCCEE
T ss_pred             CcEEEEEcccccc-CCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECc-cCCCCeE
Confidence            3456889999998 9999999998643222 23345677888766554222212345788999999999984 8999999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       218 ~W~~~  222 (265)
T 2oz4_A          218 KCLKD  222 (265)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99985

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.11  E-value=3.6e-10  Score=74.52  Aligned_cols=80  Identities=16%  Similarity=0.231  Sum_probs=57.8

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCC-cEEEEEEcCCCCCC--
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGR-AIELVCSTSGGSPD--   89 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~-~~~l~C~~~~~~p~--   89 (98)
                      .++.+|+|.+++.+ |+|.|.|.+.+.   .......+.|.|..+|.. .+.+........|+ .+.|.|.+.+.+|.  
T Consensus       251 ~g~~sL~I~~v~~~-D~G~Y~C~v~~~---~~~~~~~v~L~V~~pP~V-~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~  325 (401)
T 3f8u_B          251 TGNGTFWLPRVQPF-QEGTYLATIHLP---YLQGQVTLELAVYKPPKV-SLMPATLARAAPGEAPPELLCLVSHFYPSGG  325 (401)
T ss_dssp             EEEEEEEETTCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEBCCEE-EEESSSCCCCCTTCCCCCEEEEEEEEBSSTT
T ss_pred             CCcEEEEECcCCHh-hCceEEEEEEec---ccceeEEEEEeeccCCeE-eeccCcceeecCCCccEEEEEEecCCcCCCC
Confidence            46789999999999 999999999884   344555677888765442 22321211245676 79999999877787  


Q ss_pred             CeEEEE-ec
Q psy5866          90 PQISVT-LQ   97 (98)
Q Consensus        90 ~~~~W~-~~   97 (98)
                      +.+.|. ++
T Consensus       326 ~~VtW~~rd  334 (401)
T 3f8u_B          326 LEVEWELRG  334 (401)
T ss_dssp             CEEEEEEES
T ss_pred             cEEEEEecC
Confidence            799994 53

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.10  E-value=5.5e-10  Score=67.33  Aligned_cols=75  Identities=15%  Similarity=0.271  Sum_probs=61.6

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe--EEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ--ISV   94 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~--~~W   94 (98)
                      .+.|++++ + |.+.|.|.+...   ....+..+.|.|+.+|..+.|... ...+.+|+.++|+|.+.+++|...  ++|
T Consensus        53 ~~~ls~vs-~-d~~~~~C~~~c~---~~~~~~~v~l~Vy~~P~~v~i~~~-~~~~~~G~~~tL~C~v~~~~P~~~L~i~w  126 (196)
T 3bn3_B           53 ARQLVDIR-E-PETQPVCFFRCA---RRTLQARGLIRTFQRPDRVELMPL-PPWQPVGENFTLSCRVPGAGPRASLTLTL  126 (196)
T ss_dssp             EEEEEEEC-S-SEECCEEEEEET---TEEEEEECEEEEEBCCCCCEECCC-CSSEETTSEEEEEEEETTCBCGGGEEEEE
T ss_pred             EEEEEEEc-c-CCCceEEEEECC---CCceEEEEEEEEecCCCcCEEccC-CccccCCCcEEEEEEeCCccCCCCcEEEE
Confidence            47899998 7 888899998773   466777889999999999888653 235889999999999998888765  799


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       127 lkg  129 (196)
T 3bn3_B          127 LRG  129 (196)
T ss_dssp             EET
T ss_pred             EeC
Confidence            975

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.09  E-value=2.9e-10  Score=71.80  Aligned_cols=75  Identities=13%  Similarity=0.158  Sum_probs=57.3

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe-EEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ-ISVT   95 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~   95 (98)
                      .|.|.++..+ |+|.|+|.+.+.   ....+..+.|.|..+|.. .+.......+.+|+.+.|.|.+. +.|.|. +.|+
T Consensus       195 ~L~i~~~~~~-d~G~Y~C~a~n~---~~~~~~~~~l~V~~~P~~-~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~~i~W~  268 (331)
T 3u83_A          195 RYRLVPSREA-HQQSLACIVNYH---MDRFKESLTLNVQYEPEV-TIEGFDGNWYLQRMDVKLTCKAD-ANPPATEYHWT  268 (331)
T ss_dssp             EEEECCCGGG-TTCEEEEEEEET---TEEEEEEEECCEEEEEEE-EEECCCSCCBTTCCCEEEEEEEE-EESCCCEEEEE
T ss_pred             EEEEEecccc-CCCEEEEEEecC---CCcceeeEEEEEecCCeE-EEecCCCceEeCCCeEEEEEeCc-CCCCCCEEEEE
Confidence            4888889999 999999999985   345566677777655532 23333445688999999999995 788887 9998


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       269 ~~  270 (331)
T 3u83_A          269 TL  270 (331)
T ss_dssp             ET
T ss_pred             EC
Confidence            74

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.09  E-value=6.8e-11  Score=75.08  Aligned_cols=77  Identities=18%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEc----CCCCCCCeE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCST----SGGSPDPQI   92 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~----~~~~p~~~~   92 (98)
                      +|.|.+++.. |+|.|+|.+.+.   .......+.|.|..++............+.+|+.+.|.|.+    ..+.|.+.+
T Consensus        82 ~L~i~~v~~~-D~G~Y~C~~~n~---~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v  157 (339)
T 3o4o_C           82 ALWLLPALQE-DSGTYVCTTRNA---SYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKI  157 (339)
T ss_dssp             EEEESSBCTT-CCEEEECCEEET---TEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCB
T ss_pred             eEEECCCCcc-cCEEEEEEEECC---cceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceE
Confidence            6999999999 999999999985   45566677888876654321110122478899999999994    357889999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       158 ~W~k~  162 (339)
T 3o4o_C          158 QWYKD  162 (339)
T ss_dssp             CCEES
T ss_pred             EEecC
Confidence            99975

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.09  E-value=3.6e-10  Score=69.12  Aligned_cols=74  Identities=18%  Similarity=0.191  Sum_probs=56.4

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      ...|.|.+++.+ |+|.|+|.+.+.     ..+..+.|.|..++  ..+.. ....+.+|+.+.|.|.+..+.|.+.+.|
T Consensus        47 ~~~l~i~~~~~~-d~G~Y~C~~~~~-----~~s~~~~l~v~~~~--~~~~~-~~~~~~~g~~v~l~C~~~~~~p~~~v~W  117 (262)
T 3rjd_A           47 TPSYRITSASVN-DSGEYRCQRGLS-----GRSDPIQLEIHRGW--LLLQV-SSRVFTEGEPLALRCHAWKDKLVYNVLY  117 (262)
T ss_dssp             SSEEEESSCCGG-GCEEEEEEESSS-----CCCCCEEEEEECSS--EEEEE-SCSEEETTSCEEEEEEEGGGCCCEEEEE
T ss_pred             CCeEEEecCCcc-cCeEEEEEEecC-----CccccEEEEEeccc--eEecC-CCeEEecCCeEEEEEEccCCCCCceEEE
Confidence            457999999999 999999999763     22345677776432  23332 4567889999999999966888899999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       118 ~~~  120 (262)
T 3rjd_A          118 YRN  120 (262)
T ss_dssp             EET
T ss_pred             EEC
Confidence            975

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.08  E-value=2.2e-11  Score=80.01  Aligned_cols=81  Identities=20%  Similarity=0.276  Sum_probs=58.5

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCe-eeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQD-LHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS   93 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~-~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~   93 (98)
                      ...|.|.++..+ |+|.|+|.+.+...+.. .....+.|.|..+|............+.+|+.+.|.|.+. |.|.|.+.
T Consensus       326 ~~~L~i~~~~~~-d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~-g~P~p~i~  403 (450)
T 1z7z_I          326 RAQLLLKATPED-NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW-GNPLPELK  403 (450)
T ss_dssp             CCCEEEECCGGG-TTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCE-EESCCEEE
T ss_pred             eEEEEEecCccc-CCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecc-cCCCCcEE
Confidence            346999999999 99999999986432221 3345677777655443221111345788999999999985 89999999


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |+++
T Consensus       404 W~~~  407 (450)
T 1z7z_I          404 CLKD  407 (450)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9985

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.07  E-value=1.8e-10  Score=74.30  Aligned_cols=72  Identities=24%  Similarity=0.304  Sum_probs=55.0

Q ss_pred             cceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          22 NASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        22 ~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +++.+ |+|.|+|.+.+..  ....+..+.|.|..+|..+.... ....+.+|+.+.|.|.+..+.|.+.+.|+++
T Consensus        83 ~~~~~-D~G~Y~C~a~n~~--g~~~s~~~~l~V~~~p~~~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~  154 (404)
T 3p3y_A           83 GRPEE-YEGEYQCFARNKF--GTALSNRIRLQVSKSPLWPKENL-DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSS  154 (404)
T ss_dssp             CCTTS-SCEEEEEEEECSS--CEEEEEEEEEEECCCCCCCCCCC-CCEEEETTSCEEECCCCCCCSSCCEEEEECT
T ss_pred             CCCcc-CCEEEEEEEEcCC--CeEeeeeEEEEEeccCccccCCC-CCeEEccCCcEEEEeCCCCCCCCCeEEEeCC
Confidence            78889 9999999999852  12334567788876665544332 3468899999999999866889999999874

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.07  E-value=6.2e-10  Score=69.35  Aligned_cols=84  Identities=14%  Similarity=0.161  Sum_probs=55.6

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE-------CC-----------CC-Ce---eeEeeEEEEEE-CCCCCCEEe-C
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA-------AG-----------SG-QD---LHSQVYTVTVL-TPPQPPKIS-P   65 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~-------~~-----------~~-~~---~~~~~~~l~v~-~~~~~p~i~-~   65 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+       ..           .. ..   .......+.|. .++..|.+. .
T Consensus        96 ~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~  174 (267)
T 3u1s_H           96 DSGASTVYMELRGLTAD-DTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPL  174 (267)
T ss_dssp             CGGGCCEEEEECSCCGG-GCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEE
T ss_pred             cCCCCEEEEEECCCChh-hCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEe
Confidence            34457889999999999 99999999861       10           00 00   12223567775 344556553 1


Q ss_pred             CCCceecCCCcEEEEEEcCCCCC-CCeEEE
Q psy5866          66 GANPVATEGRAIELVCSTSGGSP-DPQISV   94 (98)
Q Consensus        66 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W   94 (98)
                      .+.....+|..+.|.|.+.+..| .+.+.|
T Consensus       175 ~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W  204 (267)
T 3u1s_H          175 APSSKSTSGGTAALGCLVKDYFPEPVTVSW  204 (267)
T ss_dssp             CCCGGGEETTEEEEEEEEEEEBSSCCEEEE
T ss_pred             cCCcccCCCCcEEEEEEEeEEECCCeEEEE
Confidence            23334567899999999987677 567999

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.07  E-value=2.3e-10  Score=73.48  Aligned_cols=74  Identities=15%  Similarity=0.191  Sum_probs=56.5

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCC----CCCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGG----SPDP   90 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~----~p~~   90 (98)
                      ...|.|.+++.+ |+|.|+|.+.+.   .......+.+.|..+|..+     ....+.+|+.+.|.|.+.+.    .|.|
T Consensus       141 ~~~L~i~~v~~~-d~G~Y~C~a~~~---~~~~~~~~~l~v~~~p~~~-----~~~~~~~G~~v~l~C~~~~~~~~~~P~p  211 (363)
T 1wio_A          141 GKTLSVSQLELQ-DSGTWTCTVLQN---QKKVEFKIDIVVLAFQKAS-----SIVYKKEGEQVEFSFPLAFTVEKLTGSG  211 (363)
T ss_dssp             SSEEEECSBCGG-GCEECEEEEEET---TEEEEECCEECEECCSCSE-----EEEEEETBCCEEEECCCCCCCCSSCEEE
T ss_pred             ceEEEEeeCChh-cCCEEEEEEecC---CCeEEEEEEEEEecCCCCC-----CceEEecCCEEEEEEEEecccccCCCce
Confidence            457999999999 999999999984   3445555677776555543     23568889999999987532    6788


Q ss_pred             eEEEEec
Q psy5866          91 QISVTLQ   97 (98)
Q Consensus        91 ~~~W~~~   97 (98)
                      .+.|+++
T Consensus       212 ~i~W~~~  218 (363)
T 1wio_A          212 ELWWQAE  218 (363)
T ss_dssp             EEEEEES
T ss_pred             eEEEecC
Confidence            9999874

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.07  E-value=2.4e-10  Score=79.93  Aligned_cols=78  Identities=19%  Similarity=0.352  Sum_probs=60.6

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      .....|.|.++... |+|.|+|.+.|.   .+..+..+.|.|..+|.  .+.......+.+|+.+.|.|.+. |.|.|.+
T Consensus       674 ~~~~~L~i~~v~~~-d~G~Y~C~a~N~---~g~~~~~~~l~V~~~P~--~~~~~~~~~v~~G~~v~l~C~~~-g~P~p~i  746 (816)
T 3dmk_A          674 RRGSVLTIEAVEAS-HAGNFTCHARNL---AGHQQFTTPLNVYVPPR--WILEPTDKAFAQGSDAKVECKAD-GFPKPQV  746 (816)
T ss_dssp             TTEEEEEEESCCGG-GCEEEEEEEECS---SCEEEEEEEECEEEEEE--EEECCCCEEEETTCCEEEECEEE-EESCCEE
T ss_pred             CCeeEEEEccCChh-hCEEEEEEEEeC---CccEEEEEEEEEEeCCc--eeeecccceecCCCcEEEEEEEe-cCCCCeE
Confidence            34568999999999 999999999985   34555667777765543  22223456788999999999995 7899999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       747 ~W~k~  751 (816)
T 3dmk_A          747 TWKKA  751 (816)
T ss_dssp             ECCEE
T ss_pred             EEEec
Confidence            99874

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.05  E-value=2.2e-10  Score=73.51  Aligned_cols=70  Identities=17%  Similarity=0.374  Sum_probs=53.1

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      .+.++|.|.+++.+ |+|.|+|.+.+.     .  ..+.|.|...    .+.  +...+.+|+.+.|.|.+. +.|.|.+
T Consensus        64 ~~~~~L~I~~v~~~-D~G~Y~C~~~n~-----~--~~~~l~V~~~----~~~--~~~~v~~G~~v~l~C~~~-~~p~~~v  128 (363)
T 1wio_A           64 QGNFPLIIKNLKIE-DSDTYICEVEDQ-----K--EEVQLLVFGL----TAN--SDTHLLQGQSLTLTLESP-PGSSPSV  128 (363)
T ss_dssp             TTCCCEEECSCCGG-GCEEEEEEETTE-----E--EEEEEEEEEE----EES--SCSSEESBSCEEEEEECC-TTCCCCE
T ss_pred             CCeEEEEECCCCHH-HCEEEEEEEEEC-----C--CcEEEEEEeC----CCC--CceEEecCCCEEEEEEcC-CCCCCeE
Confidence            35677999999999 999999999763     1  2456666521    122  334778999999999986 5889999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       129 ~W~~~  133 (363)
T 1wio_A          129 QCRSP  133 (363)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            99975

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.05  E-value=7.2e-10  Score=68.81  Aligned_cols=77  Identities=22%  Similarity=0.358  Sum_probs=54.2

Q ss_pred             EEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC-CCCEEe-CCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          18 LIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP-QPPKIS-PGANPVATEGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        18 l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~-~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      |.|.+++.+ |+|.|+|.+.+..  ....+..+.|.|...+ .+|.+. ......+.+|+.+.|.|.+.+..+.+.+.|+
T Consensus       146 L~i~~~~~~-d~G~Y~C~a~n~~--~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~  222 (292)
T 4dkd_C          146 FTIHRAKFI-QSQDYQCSALMGG--RKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQ  222 (292)
T ss_dssp             CEETTCCGG-GCSEEEEEECSTT--SCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECC
T ss_pred             EEECCCCHH-HCeEEEEEEEeCC--CceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEe
Confidence            999999999 9999999999742  2334446788887532 255552 2234456799999999999744445667786


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       223 ~~  224 (292)
T 4dkd_C          223 HN  224 (292)
T ss_dssp             BS
T ss_pred             CC
Confidence            53

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.05  E-value=3.4e-10  Score=71.28  Aligned_cols=77  Identities=19%  Similarity=0.273  Sum_probs=54.4

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC-eEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP-QISVT   95 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~   95 (98)
                      .|.|.++... |+|.|+|.+.+... .......+.|.|..+|.. .+.......+.+|+.+.|.|.+. |.|.| .+.|+
T Consensus       178 ~l~i~~~~~~-d~g~Y~C~a~n~~~-~~~~~~~~~l~V~~~P~v-~~~~~~~~~~~~g~~v~l~C~~~-g~P~p~~v~W~  253 (313)
T 4fqp_A          178 LWILVPSSQV-DGKNVTCKVEHESF-EKPQLLTVNLTVYYPPEV-SISGYDNNWYLGQNEATLTCDAR-SNPEPTGYNWS  253 (313)
T ss_dssp             EEEECCCGGG-TTCEEEEEEECTTS-SSCEEEEEECCBCEEEEE-EEECCCSCEETTCCCEEEEEEEE-EESCCCEEEEE
T ss_pred             eeeecccccc-cCeeEEEEEEccCc-CccceeeeecccccCCcc-ccccccceeecCCCeEEEEEEec-CCCCCcEEEEE
Confidence            4888999999 99999999998533 233344455555434332 23333445677889999999986 78888 69999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       254 ~~  255 (313)
T 4fqp_A          254 TT  255 (313)
T ss_dssp             ET
T ss_pred             EC
Confidence            75

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.03  E-value=2.5e-10  Score=68.47  Aligned_cols=78  Identities=17%  Similarity=0.301  Sum_probs=49.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE--eCCCCceecCCCcEEEEEEcCCCCCC-CeE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI--SPGANPVATEGRAIELVCSTSGGSPD-PQI   92 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~   92 (98)
                      .+|+|.+++.+ |+|.|+|.+.+..... .....+.+.+ ....+|.+  .. ......+|+.+.|.|.+.+.+|+ +.+
T Consensus        68 ~~L~I~~~~~~-D~G~Y~C~a~~~~~~~-~~~~~v~~~~-~~~~~P~v~~~~-~~~~~~~g~~~~L~C~~~g~~P~~~~v  143 (207)
T 2vol_A           68 SELPIMHQDWL-NGKEFKCRVNSAAFPA-PIEKTISKTK-GRPKAPQVYTLP-PPKEQMAKDKVSLTCMITDFFPEDITV  143 (207)
T ss_dssp             EEEECCHHHHH-TTCCEEEEEECTTCSS-CEEEEECCCC-CCCBCCEEEEEC-CCTGGGSSSEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEEehhHcC-CCCEEEEEEEccCCCC-ceEEEeccCC-CCCcCCeEEEeC-CCHHHhcCCceEEEEEEeeEECCCCEE
Confidence            46999999999 9999999999853321 1122222210 12233444  22 22233468999999999755665 489


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       144 ~W~k~  148 (207)
T 2vol_A          144 EWESN  148 (207)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99975

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.02  E-value=1.6e-09  Score=75.79  Aligned_cols=79  Identities=23%  Similarity=0.378  Sum_probs=59.6

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEe-CCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS-PGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      ....|.|.+++.+ |+|.|+|.+.+.   .......+.+.|.....+|.+. ......+.+|+.+.|.|.+. |.|.+.+
T Consensus       387 ~~~~L~i~~v~~~-d~G~Y~C~a~n~---~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~-g~p~p~v  461 (816)
T 3dmk_A          387 SESVLRIESVKKE-DKGMYQCFVRND---RESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG-GNPTPEI  461 (816)
T ss_dssp             CSSEEEESSCCGG-GCEEEEEEEECS---SCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEE-CSSCCEE
T ss_pred             CCCEEEEcCCCHH-HCEEEEEEEECC---CCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEe-cCCCCEE
Confidence            3457999999999 999999999985   3344445566665444556552 22456788999999999985 7899999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       462 ~W~~~  466 (816)
T 3dmk_A          462 SWELD  466 (816)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99974

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.02  E-value=2.6e-09  Score=62.39  Aligned_cols=70  Identities=17%  Similarity=0.315  Sum_probs=51.1

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCC-CCeEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSP-DPQIS   93 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~   93 (98)
                      ...|.|.  +.+ |+|.|+|.+.+.    .  ...+.|.|..+|.. ... .....+.+|+.+.|.|.+. +.| .+.+.
T Consensus        50 ~~~l~i~--~~~-d~G~Y~C~~~n~----~--~~~~~l~V~~~P~~-~~~-~~~~~~~~g~~~~l~C~~~-g~p~~~~i~  117 (184)
T 3b5h_A           50 KTEFKVD--SDD-QWGEYSCVFLPE----P--MGTANIQLHGPPRV-KAV-KSSEHINEGETAMLVCKSE-SVPPVTDWA  117 (184)
T ss_dssp             EEEEEEC--GGG-CCEEEEEEEEST----T--SCEEEEEECCSCCC-EES-CSEEEECTTSCEEEEEECC-CSSCCCEEE
T ss_pred             cEEEEEe--chh-hCeEEEEEEECC----c--CcEEEEEEecCCce-eec-CCCcEEcCCCcEEEEEEEC-CCCCCCeEE
Confidence            4456666  578 999999999972    1  23457777666543 222 2345788999999999986 677 79999


Q ss_pred             EEe
Q psy5866          94 VTL   96 (98)
Q Consensus        94 W~~   96 (98)
                      |++
T Consensus       118 W~~  120 (184)
T 3b5h_A          118 WYK  120 (184)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.01  E-value=4.3e-10  Score=67.97  Aligned_cols=78  Identities=14%  Similarity=0.280  Sum_probs=49.9

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE--eCCCCceecCCCcEEEEEEcCCCCCCC-eE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI--SPGANPVATEGRAIELVCSTSGGSPDP-QI   92 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~   92 (98)
                      .+|+|.+++.+ |+|.|+|.+.+..... .....+.+ +.....+|.+  .. ......+|+.+.|.|.+.+.+|.+ .+
T Consensus        76 ~~L~I~~~~~~-D~g~Y~C~~~~~~~~~-~~~~~v~~-~~~~~~~P~v~~~~-~~~~~~~g~~~~L~C~~~g~~P~~~~v  151 (218)
T 2rgs_A           76 STLPIQHQDWM-SGKEFKCKVNNKDLPS-PIERTISK-IKGLVRAPQVYILP-PPAEQLSRKDVSLTCLVVGFNPGDISV  151 (218)
T ss_dssp             EEEECCHHHHH-TTCCEEEEEEETTCSS-CEEEEECC-CCCCCBCCEEEEEC-CCGGGTTSSEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEEcHHHcC-CCCeEEEEEECCcCCC-cceEEEee-cCCCCCCCEEEEEC-CChHHhcCCceEEEEEEEeeeCCCcEE
Confidence            46999999999 9999999999863311 11121111 0122234444  22 222334689999999997547765 89


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       152 ~W~k~  156 (218)
T 2rgs_A          152 EWTSN  156 (218)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99975

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.01  E-value=2.2e-10  Score=73.85  Aligned_cols=78  Identities=18%  Similarity=0.289  Sum_probs=54.5

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISV   94 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W   94 (98)
                      +.+|.|.+++.+ |+|.|+|.+.+..+  ...+..+.+.|...+.+ .+.+ ....+.+|+.+.|.|.+..+.|.+.+.|
T Consensus        61 ~~~L~i~~~~~~-D~G~Y~C~a~n~~g--~~~s~~~~l~v~~~~~p-~~~~-~~~~~~~G~~v~l~C~~~~~~p~~~v~W  135 (395)
T 1bih_A           61 EGSLVFLRPQAS-DEGHYQCFAETPAG--VASSRVISFRKTYLIAS-PAKT-HEKTPIEGRPFQLDCVLPNAYPKPLITW  135 (395)
T ss_dssp             SCCEEESSCCGG-GCEEEEEEEEETTE--EEECCCEEEEEEEEECC-CCEE-EEECCBTTEEEEECCCCCEEESCCEEEE
T ss_pred             CceEEEecCCCC-CCcEEEEEEEeCCC--eEEeEEEEEEEEEeecC-CcCC-cceeeeeCCcEEEEecCCCCCCCCeEEE
Confidence            447999999999 99999999998521  12222345544322222 2221 2456779999999999756889999999


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       136 ~~~  138 (395)
T 1bih_A          136 KKR  138 (395)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            974

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.00  E-value=2.5e-10  Score=68.82  Aligned_cols=80  Identities=15%  Similarity=0.137  Sum_probs=52.0

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE--eCCCCceecCCCcEEEEEEcCCCCCC-C
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI--SPGANPVATEGRAIELVCSTSGGSPD-P   90 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p~-~   90 (98)
                      +..+|+|.+++.+ |+|.|+|.+.+...   .......+.+.....+|.+  .......+.+|..+.|.|.+.+.+|+ +
T Consensus        64 ~~~~L~I~~~~~~-D~g~Y~C~~~~~~~---~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~  139 (214)
T 1ow0_A           64 VSSVLPGCAEPWN-HGKTFTCTAAYPES---KTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDV  139 (214)
T ss_dssp             EEEECTTTHHHHH-HTCEEEEEECCSSC---SSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCC
T ss_pred             EEEEEEEeHHHcC-CCCeEEEEEecCCC---CCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCc
Confidence            3457999999999 99999999987532   1111122221122344444  22222346788999999999765664 5


Q ss_pred             eEEEEec
Q psy5866          91 QISVTLQ   97 (98)
Q Consensus        91 ~~~W~~~   97 (98)
                      .+.|+++
T Consensus       140 ~v~W~k~  146 (214)
T 1ow0_A          140 LVRWLQG  146 (214)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999985

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.99  E-value=2.8e-09  Score=65.31  Aligned_cols=79  Identities=19%  Similarity=0.240  Sum_probs=52.3

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCC-----CCeeeEeeEEEEEEC---CCCCCEEeCCCCceecCCCcEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGS-----GQDLHSQVYTVTVLT---PPQPPKISPGANPVATEGRAIELVCS   82 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~-----~~~~~~~~~~l~v~~---~~~~p~i~~~~~~~~~~g~~~~l~C~   82 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+...     ..........|.|..   .+..|.+..      .. ....|.|.
T Consensus        70 ~~~~~~sL~I~~v~~~-Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~------~~-~~~~L~C~  141 (229)
T 1hxm_A           70 IAKNLAVLKILAPSER-DEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFV------MK-NGTNVACL  141 (229)
T ss_dssp             GGGTEEEEEESSCCGG-GCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEE------EE-ETTEEEEE
T ss_pred             CCCCEEEEEECcCCHh-HCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEE------cC-CCCeEEEE
Confidence            4567889999999999 99999999987420     111222335777764   233444421      11 12489999


Q ss_pred             cCCCCCCC-eEEEEec
Q psy5866          83 TSGGSPDP-QISVTLQ   97 (98)
Q Consensus        83 ~~~~~p~~-~~~W~~~   97 (98)
                      +.+..|.+ .+.|+++
T Consensus       142 ~~g~~P~~i~v~W~~~  157 (229)
T 1hxm_A          142 VKEFYPKDIRINLVSS  157 (229)
T ss_dssp             EESCBSSCCEEEEECS
T ss_pred             EEEEeCCCEEEEEecC
Confidence            98777765 8999874

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.99  E-value=5.4e-10  Score=69.45  Aligned_cols=78  Identities=17%  Similarity=0.247  Sum_probs=51.2

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC-CCCCEEeCCCC---ceecCCCcEEEEEEcCCCCCCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP-PQPPKISPGAN---PVATEGRAIELVCSTSGGSPDP   90 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~-~~~p~i~~~~~---~~~~~g~~~~l~C~~~~~~p~~   90 (98)
                      ..+|.|.+++.+ |+|.|+|.+.+..+.....  ...+.|.+. |..+.+.....   ..+.+|+.+.|.|.+.  .|.+
T Consensus        50 ~~~L~i~~~~~~-D~G~Y~C~a~n~~g~~~~~--~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~--~p~~  124 (289)
T 3mjg_X           50 SSVLTLTNLTGL-DTGEYFCTHNDSRGLETDE--RKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT--DPQL  124 (289)
T ss_dssp             EEEEEECSCCGG-GCEEEEEECCC------CC--CEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS--CTTS
T ss_pred             eEEEEEccCChh-hCEEEEEEEcccCCCCcCc--EEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC--CCCc
Confidence            468999999999 9999999998753211112  234444443 44444432122   4688999999999986  4667


Q ss_pred             eEEEEec
Q psy5866          91 QISVTLQ   97 (98)
Q Consensus        91 ~~~W~~~   97 (98)
                      .+.|++.
T Consensus       125 ~v~w~~~  131 (289)
T 3mjg_X          125 VVTLHEK  131 (289)
T ss_dssp             CEEEEES
T ss_pred             eEEEEeC
Confidence            7888753

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.99  E-value=1.7e-09  Score=69.78  Aligned_cols=77  Identities=26%  Similarity=0.390  Sum_probs=57.6

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC---E-EeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP---K-ISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p---~-i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      +|.|.+++.+ |+|.|+|.+.+..+  ...+..+.+.|...|..+   . +.......+.+|+.+.|.|.+. +.|.+.+
T Consensus       178 ~L~i~~~~~~-d~G~Y~C~~~n~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~  253 (403)
T 3laf_A          178 ALQISRLQPG-DSGVYRCSARNPAS--TRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVS-GYPPPSF  253 (403)
T ss_dssp             CEEECSCCGG-GCEEEEEEEECSSC--CCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEE-EESCCEE
T ss_pred             eEEEcccccc-cCEEEEEEEEcCCC--ceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcC-CCCCCeE
Confidence            6999999999 99999999998532  223344677777665432   1 2223456788999999999986 7888999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       254 ~W~~~  258 (403)
T 3laf_A          254 TWLRG  258 (403)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99974

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.99  E-value=6.1e-10  Score=71.64  Aligned_cols=77  Identities=22%  Similarity=0.251  Sum_probs=55.0

Q ss_pred             EEEEcccee-eccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          17 DLIISNASF-ERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        17 ~l~I~~v~~-~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      +|.|.++.. + |+|.|+|.+.+..+  ...+..+.+.|...+..+.. ......+.+|+.+.|.|.+..+.|.+.+.|+
T Consensus        62 ~L~i~~~~~~~-D~G~Y~C~a~n~~g--~~~s~~~~l~v~~~~~~~~~-~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~  137 (382)
T 1cs6_A           62 DLVISNPVKAK-DAGSYQCVATNARG--TVVSREASLRFGFLQEFSAE-ERDPVKITEGWGVMFTCSPPPHYPALSYRWL  137 (382)
T ss_dssp             EEEEESCCHHH-HCEEEEEEEEETTE--EEECCCEEEEEEEECCCCSS-CCCCEEEETTSCEEECCCCCSEESCCEEEEE
T ss_pred             eEEEecccccc-cCEEEEEEEEcCCc--EEEecceEEEeecccccccc-CCCceEEecCCcEEEEeCCCCCCCCcEEEEE
Confidence            589999986 8 99999999998521  22233455665543332221 1245678999999999997667888999999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       138 ~~  139 (382)
T 1cs6_A          138 LN  139 (382)
T ss_dssp             ES
T ss_pred             EC
Confidence            75

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.99  E-value=1.9e-09  Score=67.04  Aligned_cols=70  Identities=20%  Similarity=0.290  Sum_probs=55.1

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC-CeEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD-PQISV   94 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W   94 (98)
                      ..|.|.+++.+ |+|.|+|.+.+   +.   +..+.|.|..+|... +. .....+.+|+.+.|.|.+. + |. +.+.|
T Consensus        57 ~~L~i~~~~~~-d~G~Y~C~~~n---g~---~~~~~l~V~~~~~~~-~~-~~~~~~~~g~~v~l~C~~~-~-p~~~~v~W  125 (290)
T 2o26_X           57 NEWIQEKAEAT-RTGTYTCSNSN---GL---TSSIYVFVRDPAKLF-LV-GLPLFGKEDSDALVRCPLT-D-PQVSQYSL  125 (290)
T ss_dssp             SEEEETTCCGG-GCEEEEEEESS---SC---EEEEEEEEECSSCCB-CC-CCCEEEETTSCEEECCCBS-C-CSCEEEEE
T ss_pred             ceEEEeccCHH-hCeEEEEEeeC---Cc---cEEEEEEEeCCCccc-cc-ccceEEecCCeEEEeCcCC-C-CCCceEEE
Confidence            57999999999 99999999987   12   556788887666543 32 3557888999999999986 4 66 89999


Q ss_pred             Ee
Q psy5866          95 TL   96 (98)
Q Consensus        95 ~~   96 (98)
                      ++
T Consensus       126 ~~  127 (290)
T 2o26_X          126 IE  127 (290)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.99  E-value=1.1e-09  Score=70.89  Aligned_cols=80  Identities=20%  Similarity=0.297  Sum_probs=52.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE----CCCCCCEE--eCCCCceecCCCcEEEEEEcCCCCCC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL----TPPQPPKI--SPGANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~----~~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      .+|.|.+++.+ |+|.|+|.+.+..+..........+.+.    .....|.+  .......+.+|+.+.|.|.+. |.|.
T Consensus       157 ~~L~I~~v~~~-D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~-g~P~  234 (384)
T 3kld_A          157 GNLYIAKVEKS-DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL-GNPV  234 (384)
T ss_dssp             CCEEESSCCGG-GCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEE-EESC
T ss_pred             CcEEEeecCHH-HCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEe-ecCC
Confidence            35999999999 9999999999964322211111222221    11112222  222345688999999999985 7899


Q ss_pred             CeEEEEec
Q psy5866          90 PQISVTLQ   97 (98)
Q Consensus        90 ~~~~W~~~   97 (98)
                      |.+.|++.
T Consensus       235 p~i~W~k~  242 (384)
T 3kld_A          235 PTILWRRA  242 (384)
T ss_dssp             CEEEEEET
T ss_pred             CcEEEEeC
Confidence            99999973

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.98  E-value=2.9e-10  Score=67.26  Aligned_cols=75  Identities=16%  Similarity=0.195  Sum_probs=47.2

Q ss_pred             eEEEEEcc-ceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC---------------EEeCC-----CC---ce
Q psy5866          15 RYDLIISN-ASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP---------------KISPG-----AN---PV   70 (98)
Q Consensus        15 ~~~l~I~~-v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p---------------~i~~~-----~~---~~   70 (98)
                      +.+|.|.+ ++.+ |+|.|+|.+.+..+   ..+..+.+.|.....+.               .+...     ..   ..
T Consensus        43 ~~~L~I~~~~~~~-D~G~Y~C~a~n~~g---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (186)
T 1jbj_A           43 DKHLVLQDFSEVE-DSGYYVCYTPASNK---NTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDG  118 (186)
T ss_dssp             CSEEEEESCCTTT-SCEEEEEECSSCCC---CCCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECC
T ss_pred             CCEEEECCCCccc-cCEEEEEEEEeCCC---cEEEEEEEEEecccccccccccccccccCCcccccccccccccccccee
Confidence            34799999 9999 99999999988533   22233333332211110               00000     00   12


Q ss_pred             ecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +.+|+.+.|.|.+    |.|.+.|+++
T Consensus       119 ~~~G~~v~l~C~~----p~p~i~W~k~  141 (186)
T 1jbj_A          119 SRGDGSVLLTCGL----TDKTIKWLKD  141 (186)
T ss_dssp             CSSSCEEEEECSS----SCSCEEEEET
T ss_pred             cCCCCeEEEEeeC----CCCeEEEEEC
Confidence            3489999999986    6789999985

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.98  E-value=1.3e-09  Score=72.97  Aligned_cols=76  Identities=14%  Similarity=0.160  Sum_probs=50.0

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCc-eecCCCcEEEEEEcCCCCCC---Ce
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANP-VATEGRAIELVCSTSGGSPD---PQ   91 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~-~~~~g~~~~l~C~~~~~~p~---~~   91 (98)
                      ..|.|.++..+ | |.|+|.+.|..+   .......+.|...|.. .+...... .+.+|+.+.|.|.+.+..|.   +.
T Consensus       281 s~L~i~~~~~~-d-G~Y~C~a~n~~g---~~~~~~~l~v~~~P~~-~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~  354 (523)
T 2rcj_C          281 SVVTVPSSSLG-T-QTYICNVNHKPS---NTKVDKRVEPLSLPSV-FLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVK  354 (523)
T ss_pred             EEEEechhhcC-C-ceEEEEEEeCCC---CcceEEecCCCcCceE-EecCCCchhhcccCCceEEEEEEecccCCCCceE
Confidence            37999999999 9 999999999633   2233344444322221 12221222 37889999999999743333   58


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       355 v~W~k~  360 (523)
T 2rcj_C          355 FNWYVD  360 (523)
T ss_pred             EEEEEC
Confidence            999985

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.98  E-value=2.2e-09  Score=68.18  Aligned_cols=77  Identities=17%  Similarity=0.167  Sum_probs=52.2

Q ss_pred             eEEEEEccceeeccCe-EEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCC-CCeE
Q psy5866          15 RYDLIISNASFERDNG-KFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSP-DPQI   92 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G-~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~   92 (98)
                      ..+|.|.+++.+ |+| .|+|.+.+..+   .......+.++..|.. .+.......+.+|+.+.|.|.+. |.| .+.+
T Consensus        88 ~~~L~i~~v~~~-D~Gs~Y~C~a~n~~g---~~~~~~~~~v~~~~p~-~~~~~~~~~~~~G~~v~L~C~~~-g~p~~~~i  161 (329)
T 3oq3_B           88 NGDLWIANYTSN-DSHRRYLCTVTTKNG---DCVQGIVRSHIRKPPS-CIPETYELGTHDKYGIDLYCGIL-YAKHYNNI  161 (329)
T ss_dssp             TTEEEESSCCGG-GGGCCEEEEEECTTS---CEEEEEEEEEECCCCS-CEEEEEETTSSTTTCEEEECCCC-SCCCCCEE
T ss_pred             cceEEEcCCChH-hCCCcEEEEEEeCCC---ceeeEEEEEEEcCCCc-EeccccceEEeCCCcEEEEeccC-CCCCCceE
Confidence            347999999999 999 99999998532   2222222244433322 22211224467899999999885 688 8999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       162 ~W~k~  166 (329)
T 3oq3_B          162 TWYKN  166 (329)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99975

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.97  E-value=2.6e-09  Score=66.77  Aligned_cols=84  Identities=15%  Similarity=0.217  Sum_probs=55.0

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC------------------CCCCCEEeCCCC
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT------------------PPQPPKISPGAN   68 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~------------------~~~~p~i~~~~~   68 (98)
                      +..+...+..+|.|.+++.+ |+|.|+|.+.+.   ..  .....+.+..                  ....|.+.....
T Consensus       157 ~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  230 (312)
T 2y23_A          157 MHIDRNTGIIEMFMEKLQDE-DEGTYTFQLQDG---KA--TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS  230 (312)
T ss_dssp             EEEETTTTEEEEEESCCCGG-GCEEEEEEEESS---SC--EEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEE
T ss_pred             EEEccCCCEEEEEEccCCcc-cCEeEEEEEEeC---Cc--eEEEEEEEcchhhhhhcccccccccchhhccCCceeecce
Confidence            33344566788999999999 999999999752   22  2222333310                  011233311123


Q ss_pred             ceecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      ..+.+|+.+.|.|.+. +.|.| .+.|+++
T Consensus       231 ~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~  259 (312)
T 2y23_A          231 WEVTGECNVLLKCKVA-NIKKETHIVWYKD  259 (312)
T ss_dssp             EEEETTTEEEEEEEEE-SCCSSCEEEEEET
T ss_pred             EEEeCCCEEEEEEEEc-CCCCCCEEEEeeC
Confidence            5788999999999996 67776 9999875

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.97  E-value=1.1e-09  Score=74.12  Aligned_cols=77  Identities=14%  Similarity=0.197  Sum_probs=48.5

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQI   92 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~   92 (98)
                      .+..+|.|.+++.+ |+|.|+|.+.+.   .......+.+.|  .+....... .......+....|.|.+. |.|.|.+
T Consensus       100 r~~~SL~I~~v~~~-D~G~Y~C~~~n~---~~~~~~~~~v~v--~~~~~~~~~-~p~~~~~~~~~~L~C~a~-G~P~P~i  171 (527)
T 3qs9_E          100 RGVVSMVILKMTET-QAGEYLLFIQSE---ATNYTILFTVSI--RNTLLYTLR-RPYFRKMENQDALVCISE-SVPEPIV  171 (527)
T ss_dssp             -CEEEEEESSCCSS-SCSEEEEEEEC-----CEEEEEEEEEE--C-----CEE-EEEEEECSSSSCEEEEEE-ESSCCEE
T ss_pred             ceEEEEEECcCChh-hCeeEEEEEEec---cccEEEEEEEEE--CCceeeccC-CCcEEecCCceEEEEEEc-eecCCeE
Confidence            34567999999999 999999999874   233333344444  332211111 112234566678999985 8999999


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|++.
T Consensus       172 ~W~~~  176 (527)
T 3qs9_E          172 EWVLC  176 (527)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99863

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.96  E-value=1.8e-10  Score=72.89  Aligned_cols=77  Identities=25%  Similarity=0.417  Sum_probs=26.2

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC-------------------CCEEeCC-----CCce
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ-------------------PPKISPG-----ANPV   70 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~-------------------~p~i~~~-----~~~~   70 (98)
                      ..+|.|.+++.+ |+|.|+|.+.+.    ...+..+.|.|...+.                   +|.+...     ....
T Consensus        60 ~~~L~i~~v~~~-D~G~Y~C~a~n~----~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~  134 (334)
T 1ry7_B           60 PQRLQVLNASHE-DSGAYSCRQRLT----QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLA  134 (334)
T ss_dssp             ----------------------------------------------------------------CCCCSCCTTCCCCEEE
T ss_pred             cceEEEeecccc-cCEEEEEEEEeC----CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEE
Confidence            457999999999 999999999884    2334445566654331                   2333111     1246


Q ss_pred             ecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +.+|+.+.|.|.+. |.|.+.+.|+++
T Consensus       135 v~~g~~v~l~C~~~-g~p~~~v~W~~~  160 (334)
T 1ry7_B          135 VPAANTVRFRCPAA-GNPTPSISWLKN  160 (334)
T ss_dssp             EETTCCEEEECCCC-CSSCCEEECCBT
T ss_pred             ecCCCcEEEEEEcc-CCCCCeEEEEEC
Confidence            78899999999985 789999999874

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.96  E-value=2.5e-09  Score=58.40  Aligned_cols=51  Identities=29%  Similarity=0.475  Sum_probs=38.5

Q ss_pred             eeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866           4 VEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus         4 ~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      +.++.+....+..+|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|..+|
T Consensus        57 ~~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           57 SERLSFPADGAEHGLLLTAALPT-DAGVYVCRARNA---AGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             CSSEECCEETTEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEC--
T ss_pred             eeeEEEeecCceEEEEEecCChh-hCEEEEEEEEEC---CCEEEEEEEEEEEcCC
Confidence            34455545566788999999999 999999999995   4566677888887654

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.51  E-value=6.4e-11  Score=70.79  Aligned_cols=77  Identities=12%  Similarity=0.198  Sum_probs=51.7

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCCCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      ..+.++|+|.+++.+ |+|.|.|.+...   .........|.|...  +..|.+......    ...+.|.|.+.+..|.
T Consensus        68 ~~~~~sL~I~~v~~~-DsG~Y~C~~~~~---~~~fg~gT~L~V~~~~~~~~P~V~~~~~~----~~~vtL~C~~~gf~P~  139 (185)
T 3c6l_A           68 REKKFSLHIADSQPG-DSATYFCAASDN---RIFFGDGTQLVVKPNIQNPEPAVYQLKDP----RSQDSTLCLFTDFDSQ  139 (185)
Confidence            456789999999999 999999998751   111122235665432  234555221111    1268999999999999


Q ss_pred             CeEEEEe
Q psy5866          90 PQISVTL   96 (98)
Q Consensus        90 ~~~~W~~   96 (98)
                      |.+.|..
T Consensus       140 p~v~~~~  146 (185)
T 3c6l_A          140 INVPKTM  146 (185)
Confidence            9999964

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.95  E-value=1.5e-09  Score=75.24  Aligned_cols=78  Identities=21%  Similarity=0.182  Sum_probs=33.0

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEe-CCCCceecCCCcEEEEEEcCCCCCCCeEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS-PGANPVATEGRAIELVCSTSGGSPDPQIS   93 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~   93 (98)
                      ...|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..+|...... ......+.+|+.+.|.|.+. +.|.+.+.
T Consensus       289 ~~~L~i~~v~~~-d~G~Y~C~~~~~---~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~-~~p~~~v~  363 (772)
T 3v2a_R          289 LSTLTIDGVTRS-DQGLYTCAASSG---LMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYL-GYPPPEIK  363 (772)
T ss_dssp             EEEEEESSCCST-TCSEEEEEEECS---SCEEEEEEEEEEECCCC-----------------------------------
T ss_pred             EEEEEECcCCcC-CCeEEEEEEEcC---CcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEe-eeCCCeEE
Confidence            457999999999 999999999974   3445667788888766443221 11346788999999999986 68899999


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |+++
T Consensus       364 W~~~  367 (772)
T 3v2a_R          364 WYKN  367 (772)
T ss_dssp             ----
T ss_pred             EEEC
Confidence            9864

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.92  E-value=1.1e-10  Score=80.89  Aligned_cols=79  Identities=30%  Similarity=0.469  Sum_probs=0.0

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE-eCCCCceecCCCcEEEEEEcCCCCCCCeEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI-SPGANPVATEGRAIELVCSTSGGSPDPQIS   93 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i-~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~   93 (98)
                      ...|+|.+++.+ |+|.|+|.+.+..++. ..+....+.|.. ..+|.+ .......+.+|+.+.|.|.+. |.|.|.+.
T Consensus       624 ~~~L~i~~~~~~-d~G~Y~C~a~n~~~~~-~~s~~~~l~v~~-~~~P~~~~~~~~~~v~~g~~~~l~C~~~-g~P~p~v~  699 (772)
T 3v2a_R          624 ILIMELKNASLQ-DQGDYVCLAQDRKTKK-RHCVVRQLTVLE-RVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIM  699 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEECCCCcc-CCcEEEEEEEeCCCCe-EEEEEEeecccc-cCCCEeecCCCceEEeCCCCEEEEEEeC-ccCCCeEE
Confidence            456999999999 9999999999843221 122233444431 223333 222456788999999999985 78999999


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |+++
T Consensus       700 W~k~  703 (772)
T 3v2a_R          700 WFKD  703 (772)
T ss_dssp             ----
T ss_pred             EEEC
Confidence            9975

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.92  E-value=6.6e-09  Score=68.24  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=56.7

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC--
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP--   90 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~--   90 (98)
                      .....|.|.+++ . |+| |+|.+.+.   ....+..+.|.|..+|....+. .....+.+|+.+.|.|.+. +.|++  
T Consensus        47 ~~~~~l~i~~v~-~-d~g-Y~C~a~~~---~~~~~~~~~l~V~~~P~~~~~~-~~~~~v~~G~~v~L~C~~~-g~~~~~~  118 (450)
T 1z7z_I           47 NNRKVYELSNVQ-E-DSQ-PMCYSNCP---DGQSTAKTFLTVYWTPERVELA-PLPSWQPVGKNLTLRCQVE-GGAPRAN  118 (450)
T ss_dssp             TTEEEEEEEEEC-S-CBC-CEEEEEET---TEEEEEECEEEEEBCCSEEEEC-CCCSEECTTSEEEEEEEEE-CCBCGGG
T ss_pred             CCceEEEEEecc-c-CCe-eEEEEeCC---CCcceeEEEEEEEeCCCcceec-CCCceEeeCCeEEEEEEec-CCCCCcC
Confidence            345578999985 4 889 99999763   3455666788888766543233 2447899999999999986 55666  


Q ss_pred             -eEEEEec
Q psy5866          91 -QISVTLQ   97 (98)
Q Consensus        91 -~~~W~~~   97 (98)
                       .+.|+++
T Consensus       119 ~~v~W~k~  126 (450)
T 1z7z_I          119 LTVVLLRG  126 (450)
T ss_dssp             EEEEEEET
T ss_pred             cEEEEeeC
Confidence             8999985

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.91  E-value=4.6e-09  Score=69.77  Aligned_cols=79  Identities=16%  Similarity=0.174  Sum_probs=51.5

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE--eCCCCceecCCCcEEEEEEcCCCCC-CCe
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI--SPGANPVATEGRAIELVCSTSGGSP-DPQ   91 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p-~~~   91 (98)
                      ...|+|.+++.+ |+|.|+|.+.+..+.   ......+.+.....+|.+  .+.....+.+|+.+.|.|.+.+.+| .+.
T Consensus       308 ~~~L~I~~~~~~-d~G~Y~C~a~n~~~~---~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~  383 (475)
T 1iga_A          308 SSVLPGCAEPWN-HGKTFTCTAAYPESK---TPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVL  383 (475)
T ss_pred             EEEEEEchHHhc-cCCcEEEEEEcCCCC---CceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCE
Confidence            346999999999 999999999986332   112223322122333443  2222234678999999999975555 359


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       384 v~W~k~  389 (475)
T 1iga_A          384 VRWLQG  389 (475)
T ss_pred             EEEEEC
Confidence            999975

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.90  E-value=3e-10  Score=71.27  Aligned_cols=77  Identities=10%  Similarity=0.225  Sum_probs=53.2

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC-eEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP-QISVT   95 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~   95 (98)
                      .|.|.++... |+|.|+|.+.+... .......+.|.|..+|.. .+.......+.+|+.+.|.|.+. |.|.| .+.|+
T Consensus       173 ~l~i~~~~~~-d~g~Y~C~a~n~~~-~~~~~~~~~l~V~~~P~~-~~~~~~~~~~~~g~~v~l~C~~~-g~P~p~~v~W~  248 (308)
T 4fom_A          173 QYKLFPTRFA-RGRRITCVVKHPAL-EKDIRYSFILDIQYAPEV-SVTGYDGNWFVGRKGVNLKCNAD-ANPPPFKSVWS  248 (308)
T ss_dssp             EEEECCCGGG-TTCEEEEEEECTTC-SSCEEEEEECCCCEEEEE-CCBCCCSCEETTCCSCEEECCEE-EESCEEEEECC
T ss_pred             cceEEeeeec-CCccEEEEEEccCC-CCceEEeEEEEEecCCee-EEcccceeeeeccccEEEEEEEe-cCCCCcEEEEE
Confidence            5889999999 99999999998633 233334455555433321 12222445677889999999986 67877 69998


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       249 k~  250 (308)
T 4fom_A          249 RL  250 (308)
T ss_dssp             BS
T ss_pred             EC
Confidence            74

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.88  E-value=3.7e-10  Score=72.43  Aligned_cols=75  Identities=17%  Similarity=0.197  Sum_probs=55.2

Q ss_pred             CCCeEEEEEccceeeccCe-EEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC
Q psy5866          12 DSGRYDLIISNASFERDNG-KFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP   90 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G-~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~   90 (98)
                      .....+|.|.+++.. |+| .|+|.+.+.   ....+..+.+.|..+|   .+.   ...+.+|+.+.|.|.+. |.|.|
T Consensus       208 ~~~~~~L~i~~v~~~-D~G~~Y~C~a~n~---~g~~~~~~~l~V~~~P---~i~---~~~~~~g~~v~l~C~~~-g~P~p  276 (347)
T 2ifg_A          208 GLPSLGLTLANVTSD-LNRKNVTCWAEND---VGRAEVSVQVNVSFPA---SVQ---LHTAVEMHHWCIPFSVD-GQPAP  276 (347)
T ss_dssp             CSSEEEEEEESCCST-TTTCCEEECCEET---TEECCEEECCCCBEEE---EEE---ECCCEESSSEEEEEEEE-EESCC
T ss_pred             ecccceEEEeeCChH-HCCCeEEEEEEcC---CCCEEEEEEEEEcCCC---eee---eccCccCceEEEEEEee-ecCCC
Confidence            345678999999999 999 999999985   3444455555554333   321   12345789999999996 78999


Q ss_pred             eEEEEec
Q psy5866          91 QISVTLQ   97 (98)
Q Consensus        91 ~~~W~~~   97 (98)
                      .+.|+++
T Consensus       277 ~i~W~~~  283 (347)
T 2ifg_A          277 SLRWLFN  283 (347)
T ss_dssp             EEEEEET
T ss_pred             cEEEEeC
Confidence            9999875

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.87  E-value=1.1e-08  Score=55.96  Aligned_cols=53  Identities=19%  Similarity=0.248  Sum_probs=41.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPK   62 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~   62 (98)
                      ++.+....+...|.|.+++.+ |+|.|+|.+.|.   ....+..+.|.|...|.+|.
T Consensus        53 ~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~---~g~~~~~~~l~V~~~p~~P~  105 (114)
T 2cqv_A           53 HMKVENSENGSKLTILAARQE-HCGCYTLLVENK---LGSRQAQVNLTVVDKPDPPA  105 (114)
T ss_dssp             SEEEEECSSEEEEEETTCCTT-TCEEEEEEEECS---SCEEECCEEEEEECSCSCCC
T ss_pred             CEEEEEcCCEEEEEECCCChh-cCEEEEEEEEEC---CCcEEEEEEEEEECCCCCCC
Confidence            444444555778999999999 999999999985   44566678899987776654

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.85  E-value=1.2e-08  Score=63.27  Aligned_cols=68  Identities=18%  Similarity=0.336  Sum_probs=47.5

Q ss_pred             eeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC-CCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          24 SFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP-PQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        24 ~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~-~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      ... |+|.|+|.+.+..  ....+..+.+.|... +....+.+ ....+.+|+.+.|.|.+. +.|.|.+.|++
T Consensus       149 ~~~-d~G~Y~C~a~n~~--~~~~s~~~~l~v~~~~~p~i~~~~-~~~~v~~G~~v~L~C~~~-g~p~p~v~W~~  217 (289)
T 3mjg_X          149 GIF-EDRSYICKTTIGD--REVDSDAYYVYRLQVSSINVSVNA-VQTVVRQGENITLMCIVI-GNEVVNFEWTY  217 (289)
T ss_dssp             ECC-CSSEEEEEEEETT--EEEECCCEEEEECCCCCCCCEEEE-SCSEEETTSCEEEEEEEE-SCSSBEEEEEC
T ss_pred             eec-cCcEEEEEEEeCC--ceeeeeeEEEEecCCCCCCcEEeC-CcceeEcCCCEEEEEEEC-CCCCcceEEEc
Confidence            467 9999999998742  233344456666542 22223332 346789999999999996 68999999984

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.85  E-value=1.3e-08  Score=68.09  Aligned_cols=77  Identities=14%  Similarity=0.265  Sum_probs=54.9

Q ss_pred             EEEEccceeeccCe-EEEEEEEECCCCCeeeEeeEEEEEEC-CCCCCEEe-CCCCceecCCCcEEEEEEcCCCCCCCe-E
Q psy5866          17 DLIISNASFERDNG-KFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKIS-PGANPVATEGRAIELVCSTSGGSPDPQ-I   92 (98)
Q Consensus        17 ~l~I~~v~~~~d~G-~y~C~~~~~~~~~~~~~~~~~l~v~~-~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~~~-~   92 (98)
                      .|.|.+++.+ |+| .|+|.+.+...  ...+..+.|.|.. +..+|.+. ......+.+|+.+.|.|.+. +.|.+. +
T Consensus       169 ~L~i~~~~~~-d~G~~Y~C~a~n~~~--~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~-g~p~p~~i  244 (524)
T 2ec8_A          169 GIMIKSVKRA-YHRLCLHCSVDQEGK--SVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIK-DVSSSVYS  244 (524)
T ss_dssp             EEEEESCCGG-GTTCEEEEEEC------CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEE-ESSTTCEE
T ss_pred             cEEEeccchh-hCCceEEEEEEECCc--eEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEe-cCCCcEEE
Confidence            5999999999 999 99999987521  2224456777762 23445552 22345789999999999997 677776 9


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       245 ~W~~~  249 (524)
T 2ec8_A          245 TWKRE  249 (524)
T ss_dssp             EEEET
T ss_pred             EEEeC
Confidence            99975

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.84  E-value=4.1e-10  Score=70.77  Aligned_cols=77  Identities=13%  Similarity=0.113  Sum_probs=51.9

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeC--CCCceecCCCcEEEEEEcC-----CCCCC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISP--GANPVATEGRAIELVCSTS-----GGSPD   89 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~--~~~~~~~~g~~~~l~C~~~-----~~~p~   89 (98)
                      +|.|.+++.+ |+|.|+|.+.+..   ......+.+.+...+....+..  .....+.+|+.+.|.|.+.     .|.|.
T Consensus        63 ~L~i~~v~~~-D~G~Y~C~a~n~~---g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~  138 (315)
T 1itb_B           63 KLWFVPAKVE-DSGHYYCVVRNSS---YCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL  138 (315)
T ss_dssp             BEECTTCCGG-GCSCCEECCCSSS---CCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCC
T ss_pred             eEEECCCChh-hCEEEEEEEeCCc---eEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCC
Confidence            6999999999 9999999998752   2233333444432221111110  0124678899999999972     58899


Q ss_pred             CeEEEEec
Q psy5866          90 PQISVTLQ   97 (98)
Q Consensus        90 ~~~~W~~~   97 (98)
                      +.+.|+++
T Consensus       139 ~~i~W~k~  146 (315)
T 1itb_B          139 PKLQWYKD  146 (315)
T ss_dssp             CCCEEEET
T ss_pred             CEEEEEEC
Confidence            99999975

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.84  E-value=1.5e-08  Score=64.37  Aligned_cols=74  Identities=18%  Similarity=0.287  Sum_probs=57.7

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC--eEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP--QISV   94 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W   94 (98)
                      .+.|++++.+   |.|.|++...   ....+..+.|.|+.+|..+.|... ...+.+|+.++|+|.+.++.|.+  +++|
T Consensus        51 ~~~l~~v~~~---~~y~C~~~~~---~~~~~~~v~l~V~~~P~~v~I~~~-~~~~~~G~~~~LtC~v~g~~P~~~l~itW  123 (291)
T 1mq8_A           51 VYELSNVQED---SQPMCYSNCP---DGQSTAKTFLTVYWTPERVELAPL-PSWQPVGKNLTLRCQVEGGAPRANLTVVL  123 (291)
T ss_dssp             EEEEESCCSC---CCCEEEEECS---SCEEEEECEEEECBCCSCCCBCCC-CSBCCSSCCCEEEEEECCCBSTTTEEEEE
T ss_pred             EEEEEecccC---CeEEEEEEcC---CccEEEEEEEEEecCCCCCEEecC-CccccCCCCEEEEEEecCccCCCCcEEEE
Confidence            4788887743   4699999753   246667789999999998888642 34688999999999999888875  5899


Q ss_pred             Eec
Q psy5866          95 TLQ   97 (98)
Q Consensus        95 ~~~   97 (98)
                      +++
T Consensus       124 ~kg  126 (291)
T 1mq8_A          124 LRG  126 (291)
T ss_dssp             ESS
T ss_pred             EEC
Confidence            975

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G

Probab=98.83  E-value=1.5e-08  Score=62.31  Aligned_cols=84  Identities=13%  Similarity=0.226  Sum_probs=53.7

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEECC-CCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCC
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAAG-SGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSG   85 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~-~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~   85 (98)
                      .+...+.++|+|.+++.+ |+|.|.|.+.... ...........|.|...  +..|.+.....  . . ..++|.|.+.+
T Consensus        75 ~~~~~~~~sLtI~~lq~~-DSG~YyCa~~~~~~~~~~~fG~GT~LtV~~~~~~~~P~V~~~~~--~-~-~~~tl~Cl~~~  149 (226)
T 3tjh_C           75 FSKSDSSFHLRKASVHWS-DSAVYFCAVSAKGTGSKLSFGKGAKLTVSPNIQNPDPAVYQLRD--S-K-SSDKSVCLFTD  149 (226)
T ss_dssp             EETTTTEEEEEESSCCGG-GCEEEEEEEEESSCSSSEEECCCEEEEEECCCSSCCCEEEEEEE--C-C----CEEEEEES
T ss_pred             EcCCCCEEEEEEecCCcc-cCCCEEEEEEecCCccccccCCCeEEEEeCCCCCCCCEEEEccc--C-C-CCeEEEEEccc
Confidence            346778999999999999 9999999998531 11122222346777643  34455521111  1 1 23689999999


Q ss_pred             CCCCCeEEEEec
Q psy5866          86 GSPDPQISVTLQ   97 (98)
Q Consensus        86 ~~p~~~~~W~~~   97 (98)
                      ..|..++.|+++
T Consensus       150 f~P~i~v~~~~~  161 (226)
T 3tjh_C          150 FDSQTNVSQSKD  161 (226)
T ss_dssp             CCTTCCCCCCSC
T ss_pred             ccCCcEEEeecc
Confidence            898667888764

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=98.83  E-value=6.9e-09  Score=63.90  Aligned_cols=83  Identities=14%  Similarity=0.217  Sum_probs=54.9

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECC-CCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAG-SGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSGG   86 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~-~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~~   86 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.... ...........|.|...  +..|.+....   ..+ ..++|.|.+.+.
T Consensus        64 ~~~~~~~sLtI~~lq~~-DSG~Y~Ca~~~~~~~~~~~fG~GT~L~V~~~~~~p~P~Vf~~~---~~~-~~vtl~Cl~~gf  138 (229)
T 3mbe_C           64 NSKERYSTLHIKDAQLE-DSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPEPAVYQLK---DPR-SQDSTLCLFTDF  138 (229)
T ss_dssp             ETTTTEEEEEECSCCST-TCBEEEEEEECSSSTTCEEECCCCEEEEECCCSSCCCEEEEEE---CTT-CTTCEEEEEESC
T ss_pred             CCCCCEEEEEEECCccc-CCCCEEEEEEeCCCcccceeCCCEEEEEecccCCCCCEEEEcc---CCC-CCEEEEEEcccc
Confidence            46778899999999999 9999999998531 11122223346777643  3445552111   111 237899999988


Q ss_pred             CCCCeEEEEec
Q psy5866          87 SPDPQISVTLQ   97 (98)
Q Consensus        87 ~p~~~~~W~~~   97 (98)
                      .|..++.|+++
T Consensus       139 ~P~i~v~~~~~  149 (229)
T 3mbe_C          139 DSQINVPKTME  149 (229)
T ss_dssp             CSSSCCCCCCS
T ss_pred             CCceEeEeecc
Confidence            88667888764

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.83  E-value=2.6e-09  Score=70.26  Aligned_cols=78  Identities=15%  Similarity=0.272  Sum_probs=49.0

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE-ECCCCCCEE--eCCCCceecCCCcEEEEEEcCCCCCCC-
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV-LTPPQPPKI--SPGANPVATEGRAIELVCSTSGGSPDP-   90 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v-~~~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p~~-   90 (98)
                      ..+|+|.+++.+ |+|.|+|.+.+..+.. ....  .+.+ .....+|.+  .......+..| .+.|.|.+.+.+|.+ 
T Consensus       304 ~~~L~I~~v~~~-d~G~Y~C~a~n~~~~~-~~~~--~v~~~~~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~  378 (444)
T 1igt_B          304 VSALPIQHQDWM-SGKEFKCKVNNKDLPA-PIER--TISKPKGSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDI  378 (444)
T ss_dssp             EEEEECCHHHHH-TTCEEEEEEECTTCSS-CEEE--EEECCCCCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCC
T ss_pred             EEEEEEcHHHhc-cCCcEEEEEEcCCCCC-ceEE--EEeccCCCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCC
Confidence            347999999999 9999999999864322 1122  2221 122334444  22122233444 599999997546666 


Q ss_pred             eEEEEec
Q psy5866          91 QISVTLQ   97 (98)
Q Consensus        91 ~~~W~~~   97 (98)
                      .+.|+++
T Consensus       379 ~v~W~k~  385 (444)
T 1igt_B          379 YVEWTNN  385 (444)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            8999975

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=1e-08  Score=55.21  Aligned_cols=50  Identities=22%  Similarity=0.226  Sum_probs=38.3

Q ss_pred             eeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC
Q psy5866           4 VEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ   59 (98)
Q Consensus         4 ~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~   59 (98)
                      +.++.+....+...|.|.++..+ |+|.|+|.+.|.     ..+..+.|.|..+|.
T Consensus        49 ~~r~~i~~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~-----~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           49 SDRLKVVQKGRIHKLVIANALTE-DEGDYVFAPDAY-----NVTLPAKVHVISGPS   98 (100)
T ss_dssp             CSSEEEEECSSEEEEEESSCCGG-GCSEEEEEESSS-----CCCEEEEEEEECCSC
T ss_pred             CCcEEEEEeCCEEEEEECCCChh-hCEEEEEEEcCC-----CeeEEEEEEEeCCCC
Confidence            34455555566778999999999 999999999873     345667888887664

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.82  E-value=1.7e-09  Score=68.57  Aligned_cols=77  Identities=10%  Similarity=0.146  Sum_probs=48.8

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE--eCCCCceecCCCcEEEEEEcCCCCCCC---e
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI--SPGANPVATEGRAIELVCSTSGGSPDP---Q   91 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p~~---~   91 (98)
                      .|+|.++... |+|.|+|++.+.   .......+.+.+......|.+  .......+.+|+.+.|.|.+.+..|.+   .
T Consensus        73 ~l~i~~~~~~-d~g~Y~C~a~n~---~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~  148 (323)
T 2wqr_A           73 ELTLSQKHWL-SDRTYTCQVTYQ---GHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQ  148 (323)
T ss_dssp             EEEEEHHHHH-TTCCEEEEEEET---TEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCE
T ss_pred             EEEEcHHHcC-CCCcEEEEEEeC---CCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceE
Confidence            4778888888 999999999985   222222211111111222322  222234578899999999987556666   8


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       149 i~W~k~  154 (323)
T 2wqr_A          149 LTWSRA  154 (323)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999984

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=98.82  E-value=3e-08  Score=59.70  Aligned_cols=78  Identities=14%  Similarity=0.178  Sum_probs=51.0

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCC--CCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGS--GQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSG   85 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~--~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~   85 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+...  ..........|.|...  +..|.+.....    ....++|.|.+.+
T Consensus        66 ~~~~~~~sL~I~~v~~~-Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~----~~~~~~L~C~~~g  140 (203)
T 2bnu_A           66 DKSSGRSTLYIAASQPG-DSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRR----SKSSDKSVCLFTD  140 (203)
T ss_dssp             ETTTTEEEEEESSCCGG-GCEEEEEEEEECSSSTTCCEECCCEEEEEECCCSSCCCEEEEECC----SSSSSCEEEEEES
T ss_pred             cCCCCEEEEEEeeCCcc-cCeEEEEEEEcCcCcceeeeeCCCEEEEEeCCCCCCCCeEEecCC----CCCCcEEEEEccc
Confidence            45677899999999999 99999999987310  0112223357777653  24455522111    1136799999987


Q ss_pred             CCCCCeE
Q psy5866          86 GSPDPQI   92 (98)
Q Consensus        86 ~~p~~~~   92 (98)
                      ..|.|.+
T Consensus       141 ~~P~p~v  147 (203)
T 2bnu_A          141 FDSQTNV  147 (203)
T ss_dssp             CCTTCCC
T ss_pred             cccCccc
Confidence            6888755

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.81  E-value=1.2e-08  Score=57.53  Aligned_cols=45  Identities=18%  Similarity=0.383  Sum_probs=38.5

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC-CCCCCEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT-PPQPPKI   63 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~-~~~~p~i   63 (98)
                      .++|+|.++... |+|.|+|.+.+.   ....+..+.|+|.+ ++..|.+
T Consensus        74 ~~~L~I~~v~~~-DaG~Y~Cevsn~---~g~~~~~~~L~V~~~~~~~p~~  119 (126)
T 2dav_A           74 TFEMQIIKAKDN-FAGNYRCEVTYK---DKFDSCSFDLEVHESTGTTPNI  119 (126)
T ss_dssp             EEEEEECSCCTT-SCEEEEEEEECS---SCEEEECCEEEEECCCCSCCCC
T ss_pred             eEEEEEccCCcc-cCEEEEEEEEeC---CCcEEEEEEEEEEecCCCCCeE
Confidence            588999999999 999999999996   46677788999998 6666655

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.81  E-value=1.9e-08  Score=64.72  Aligned_cols=77  Identities=12%  Similarity=0.059  Sum_probs=55.3

Q ss_pred             EEEEEccceeecc------CeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCC-
Q psy5866          16 YDLIISNASFERD------NGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSP-   88 (98)
Q Consensus        16 ~~l~I~~v~~~~d------~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p-   88 (98)
                      .+|.|.+++.. |      +|.|+|.+.+..+  ...+..+.+.+..+|.....  .....+.+|+.+.|.|.+.+..+ 
T Consensus        59 ~~L~i~~~~~~-d~~~~~d~G~Y~C~a~n~~g--~~~s~~~~v~v~~~p~~~~~--~~~~~v~~G~~v~l~C~~~~~~~~  133 (388)
T 2v5m_A           59 GKLVFPPFRAE-DYRQEVHAQVYACLARNQFG--SIISRDVHVRAVVAQYYEAD--VNKEHVIRGNSAVIKCLIPSFVAD  133 (388)
T ss_dssp             TEEEECCCCGG-GCCHHHHEEEEEEEEEETTE--EEECCCEEEEEECCCCCCCB--CCCEEEETTSCEEECCBCCTTTTT
T ss_pred             ceEEecccChh-hccccccCceEEEEEEccCC--eEEecceEEEEccccccccC--ccceeeecCCcEEEEEECcCCCCC
Confidence            36999999998 7      9999999998522  22344567777665543222  24568899999999999864333 


Q ss_pred             -CCeEEEEec
Q psy5866          89 -DPQISVTLQ   97 (98)
Q Consensus        89 -~~~~~W~~~   97 (98)
                       .+.+.|+++
T Consensus       134 ~~~~v~W~~~  143 (388)
T 2v5m_A          134 FVEVVSWHTD  143 (388)
T ss_dssp             TEEEEEEEET
T ss_pred             CcceEEEEeC
Confidence             378999975

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.81  E-value=2.5e-09  Score=64.19  Aligned_cols=72  Identities=14%  Similarity=0.224  Sum_probs=44.7

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC----------------------------CCCCCEEeCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT----------------------------PPQPPKISPG   66 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~----------------------------~~~~p~i~~~   66 (98)
                      ..+|.|.+++.+ |+|.|+|.+.+.    .  +..+.+.|..                            ....+.+...
T Consensus        48 ~~~L~i~~v~~~-DsG~Y~C~~~~~----~--s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (204)
T 1sy6_A           48 KKKWNLGSNAKD-PRGMYQCKGSQN----K--SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT  120 (204)
T ss_dssp             CCCEEEEEGGGC-CEEEEEEESSSS----C--CCCEEEEEEC------------------------------------CC
T ss_pred             CCeEEeCCCCcC-CCEEEEEEecCC----C--CeeEEEEEEEeccccccccccccccccccccccccccccccccceecC
Confidence            346999999999 999999996432    1  1223444430                            0012223221


Q ss_pred             CCceec-CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVAT-EGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~-~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      + ..+. +|+.+.|.|.   +.|.|.+.|+++
T Consensus       121 p-~~v~~~G~~v~L~C~---g~p~p~i~W~k~  148 (204)
T 1sy6_A          121 P-YKVSISGTTVILTCP---QYPGSEILWQHN  148 (204)
T ss_dssp             C-CEEEEETTEEEEECS---CCCSSCEEEEET
T ss_pred             C-ceeeecCCcEEEEcC---CCCCCceEEEEC
Confidence            2 2344 8999999997   578889999875

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.80  E-value=5.8e-09  Score=63.61  Aligned_cols=75  Identities=19%  Similarity=0.288  Sum_probs=48.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC---CCCCEE--eCCCCceecCCCcEEEEEEcCCCCC-C
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP---PQPPKI--SPGANPVATEGRAIELVCSTSGGSP-D   89 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~---~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p-~   89 (98)
                      .+|+|.+++.+ |+|.|+|.+.+...   .  ..+.+.|...   ..+|.+  .. +......+..+.|.|.+.+.+| .
T Consensus        77 s~L~I~~~~~~-D~g~Y~C~~~~~~~---~--~~~~~~v~~~~~~~~~P~v~v~~-~~~~~~~~~~~~L~C~~~g~~P~~  149 (231)
T 2w59_A           77 SAVPVSTQDWL-SGERFTCTVQHEEL---P--LPLSKSVYRNTGPTTPPLIYPFA-PHPEELSLSRVTLSCLVRGFRPRD  149 (231)
T ss_dssp             EEEECCHHHHH-TTCCEEEEEECTTC---S--SCEEEEECCCCSCCBCCEEEEEC-CCGGGGGSSEEEEEEEEEEEBSSC
T ss_pred             EEEEecchhcc-CCCEEEEEEEcCCC---C--CceEEEEecCCCCCcCCEEEEeC-CCHHHhccCceEEEEEEEeccCCC
Confidence            36999999999 99999999998532   1  2334444321   234443  22 1112233557999999975556 4


Q ss_pred             CeEEEEec
Q psy5866          90 PQISVTLQ   97 (98)
Q Consensus        90 ~~~~W~~~   97 (98)
                      +.+.|+++
T Consensus       150 ~~v~W~k~  157 (231)
T 2w59_A          150 IEIRWLRD  157 (231)
T ss_dssp             CEEEEEET
T ss_pred             cEEEEEEC
Confidence            79999985

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=98.80  E-value=3.3e-09  Score=65.20  Aligned_cols=79  Identities=11%  Similarity=0.217  Sum_probs=49.4

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE--eCCCCceecCCCcEEEEEEcCCCCCC-Ce
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI--SPGANPVATEGRAIELVCSTSGGSPD-PQ   91 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p~-~~   91 (98)
                      ..+|+|.+++.+ |+|.|+|.+.+..... .....+.+ +.....+|.+  .. .......|..+.|.|.+.+.+|+ ..
T Consensus        81 ~s~L~I~~~~~~-D~g~Y~C~~~~~~~~~-~~~~~v~~-~~~~~~~P~v~v~~-~~~~~~~g~~~~L~C~~~g~~P~~~~  156 (239)
T 1i1c_A           81 VSELPIVERDWL-NGKTFKCKVNSGAFPA-PIEKSISK-PEGTPRGPQVYTMA-PPKEEMTQSQVSITCMVKGFYPPDIY  156 (239)
T ss_dssp             EEEEECCHHHHH-TTCCEEEEEECSSSSS-CEEEEECC-CSSCCBCCEEEEEC-CCGGGGGSSEEEEEEEEEEEBSSCCE
T ss_pred             EEEEEEEhhHcc-CCCeEEEEEecccCCC-CcEEEEec-CCCCCcCCEEEEEC-CChHHhcCCcEEEEEEEeeeECCCeE
Confidence            347999999999 9999999999853311 11111111 0112234443  22 22223457889999999755665 58


Q ss_pred             EEEEec
Q psy5866          92 ISVTLQ   97 (98)
Q Consensus        92 ~~W~~~   97 (98)
                      +.|+++
T Consensus       157 v~W~k~  162 (239)
T 1i1c_A          157 TEWKMN  162 (239)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999975

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.79  E-value=4.9e-09  Score=66.45  Aligned_cols=75  Identities=11%  Similarity=0.207  Sum_probs=48.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC---CCCCCEE--eCCCCceecCCCcEEEEEEcCCCCCCC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT---PPQPPKI--SPGANPVATEGRAIELVCSTSGGSPDP   90 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~---~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p~~   90 (98)
                      ..|+|.+++.+ |+|.|+|.+.+...   ..  ...+.|..   ...+|.+  .... .....|+.+.|.|.+.+..|.+
T Consensus       178 ~~L~I~~~~~~-D~G~Y~C~a~n~~~---~~--~~~~~v~~~~~~~~~P~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~  250 (323)
T 2wqr_A          178 STLPVGTRDWI-EGETYQCRVTHPHL---PR--ALMRSTTKTSGPRAAPEVYAFATP-EWPGSRDKRTLACLIQNFMPED  250 (323)
T ss_dssp             EEEECCHHHHH-TTCCEEEEEECTTS---SS--CEEEEECCCCSCCBCCEEEEEECC-CCTTCTTEEEEEEEEEEEBSSC
T ss_pred             EEEEECHHHcc-CCCCEEEEEECCCC---CC--CeeeEEEccCCCCCCCEEEEeCCC-hHHhcCCcEEEEEEeeeeeCCC
Confidence            36999999999 99999999998531   11  22344422   2234443  2212 1223499999999987545544


Q ss_pred             -eEEEEec
Q psy5866          91 -QISVTLQ   97 (98)
Q Consensus        91 -~~~W~~~   97 (98)
                       .+.|+++
T Consensus       251 ~~v~W~k~  258 (323)
T 2wqr_A          251 ISVQWLHN  258 (323)
T ss_dssp             CEEEEEET
T ss_pred             cEEEEEEC
Confidence             8999975

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.78  E-value=1.3e-07  Score=58.21  Aligned_cols=69  Identities=20%  Similarity=0.494  Sum_probs=51.8

Q ss_pred             EEEEccc---eeeccCeE--EEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCe
Q psy5866          17 DLIISNA---SFERDNGK--FECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQ   91 (98)
Q Consensus        17 ~l~I~~v---~~~~d~G~--y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~   91 (98)
                      .+.+..+   +.. |+|.  |+|.+.+.   ....+..+.|.|...|. |.+.. ....+.+|+.+.|.|.+.   |.+.
T Consensus        57 ~~~~~~~~~~~~~-d~g~g~Y~C~a~n~---~~~~~~~~~l~V~~~p~-p~~~~-~~~~v~~G~~v~l~C~~~---p~~~  127 (265)
T 2oz4_A           57 SFSAKASVSVTAE-DEGTQRLTCAVILG---NQSQETLQTVTIYSFPA-PNVIL-TKPEVSEGTEVTVKCEAH---PRAK  127 (265)
T ss_dssp             EEEEEEEEEECGG-GCEEEEEEEEEEET---TEEEEEEEEEEEECCCC-CEEEE-SCSEEETTCEEEEEEECC---TTSE
T ss_pred             eEEEEeecccccc-cCCcceEEEEEecC---CCCcEEEEEEEEeCCCC-ceeec-CCceecCCCcEEEEEEcc---CCCE
Confidence            3555444   678 8885  99999995   45566778888876655 55543 356788999999999985   7899


Q ss_pred             EEE
Q psy5866          92 ISV   94 (98)
Q Consensus        92 ~~W   94 (98)
                      +.|
T Consensus       128 i~W  130 (265)
T 2oz4_A          128 VTL  130 (265)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=98.75  E-value=5.2e-09  Score=63.23  Aligned_cols=80  Identities=10%  Similarity=0.115  Sum_probs=52.7

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCCCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSGGSP   88 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p   88 (98)
                      ...+.++|+|++++.+ |+|.|.|.+....  .........|.|...  +..|.+....  ...  ..++|.|.+.+..|
T Consensus        67 ~~~~~~sL~I~~l~~~-DsG~Y~Ca~~~~~--~~~fG~GT~L~V~~~~~~~~P~V~~~~--~~~--~~~tl~Cl~~gf~P  139 (200)
T 3rgv_A           67 KGTTSFHLQKTSVQEI-DSAVYYCAANSGT--YQRFGTGTKLQVVPNIQNPDPAVYQLR--DSK--SSDKSVCLFTDFDS  139 (200)
T ss_dssp             TTTTBCCEEESSCCST-TCEEEEEEEESSS--CCCCCCCEEEEEECCCSSCCCEEEEEE--ESS--SSSCEEEEEESCCT
T ss_pred             CCCCEEEEEEcCCcCc-cCCCEEEEeccCc--ccccCcCEEEEEeCCCCCCCCeEEEcc--CCC--CCceEEEEcccccC
Confidence            5667889999999999 9999999986421  112223346677643  4456552111  111  22679999998888


Q ss_pred             CCeEEEEec
Q psy5866          89 DPQISVTLQ   97 (98)
Q Consensus        89 ~~~~~W~~~   97 (98)
                      ..++.|+++
T Consensus       140 ~i~v~~~~~  148 (200)
T 3rgv_A          140 QTNVSQSKD  148 (200)
T ss_dssp             TCCCCCCSS
T ss_pred             CeEeEeccC
Confidence            667888764

>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D

Probab=98.74  E-value=1e-07  Score=58.02  Aligned_cols=77  Identities=13%  Similarity=0.135  Sum_probs=50.3

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSGGS   87 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~   87 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+..... .........|.|...  +..|.+.....    ....++|.|.+.++.
T Consensus        66 ~~~~~~~sL~I~~v~~~-Dsg~Y~C~~~~~~~-~~~fg~gt~L~V~~~~~~~~P~V~~~~~----~~~~vtL~C~~~gf~  139 (215)
T 1oga_D           66 GDARKDSSLHITAAQPG-DTGLYLCAGAGSQG-NLIFGKGTKLSVKPNIQNPDPAVYQLRD----SKSSDKSVCLFTDFD  139 (215)
T ss_dssp             CTTSSEEEEEESSCCGG-GCEEEEEEEECTTS-SEEECCCEEEEEECCCSSCCCEEEEEEB----SSSSSCEEEEEESCC
T ss_pred             cCCCCEEEEEEccCCcc-cCceEEEEEecccc-cceeCCCEEEEEeccCCCcCCEEEEcCC----CCCCeEEEEEccccc
Confidence            45677899999999999 99999999985311 122223356777643  23455521111    123679999998878


Q ss_pred             CCCeE
Q psy5866          88 PDPQI   92 (98)
Q Consensus        88 p~~~~   92 (98)
                      |.+.+
T Consensus       140 P~p~v  144 (215)
T 1oga_D          140 SQTNV  144 (215)
T ss_dssp             TTCCC
T ss_pred             cCccc
Confidence            87744

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=98.73  E-value=6.1e-08  Score=58.72  Aligned_cols=78  Identities=10%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECC-CCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAG-SGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSGG   86 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~-~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~~   86 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.... ...........|.|...  +..|.|.....    ....++|.|.+.+.
T Consensus        71 ~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~----~~~~vtL~Cl~~gf  145 (211)
T 2ak4_D           71 QKSTSSFNFTITASQVV-DSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDPAVYQLRD----SKSSDKSVCLFTDF  145 (211)
T ss_dssp             ETTTTEEEEEESSCCGG-GCEEEEEEEECSBTTSCCEECCCEEEEEECCCSSCCCEEEEEBC----CSSSCCEEEEEESC
T ss_pred             cCCCCEEEEEECccccc-cCceEEEEEEcCCCcceeeECCCEEEEEeCcCCCCCCEEEEccC----CCCceEEEEEeeee
Confidence            46678899999999999 9999999998631 00112223346777643  34455522111    12367999999887


Q ss_pred             CCCCeE
Q psy5866          87 SPDPQI   92 (98)
Q Consensus        87 ~p~~~~   92 (98)
                      .|.+.+
T Consensus       146 ~P~~~v  151 (211)
T 2ak4_D          146 DSQTNV  151 (211)
T ss_dssp             CTTCCC
T ss_pred             cCCccc
Confidence            887754

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.73  E-value=2.9e-08  Score=56.48  Aligned_cols=47  Identities=30%  Similarity=0.498  Sum_probs=35.8

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI   63 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i   63 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+.    ...+..+.|.|..+|.+|.|
T Consensus        99 ~~~~~~L~I~~v~~~-DsG~Y~C~~~n~----~~~~~~~~L~V~~~P~~P~i  145 (145)
T 1z9m_A           99 TPHELSISISNVALA-DEGEYTCSIFTM----PVRTAKSLVTVLGIPQKPII  145 (145)
T ss_dssp             CSSEEEEEECSCCGG-GCEEEEEEECSS----SCEEEEEEEEEECCCC----
T ss_pred             CCCeEEEEECCCChh-hCEEEEEEEEcC----CCceEEEEEEEEeCCCCCcC
Confidence            445789999999999 999999999884    34566778899888877653

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.72  E-value=5.4e-10  Score=70.02  Aligned_cols=79  Identities=14%  Similarity=0.139  Sum_probs=46.8

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEc---------
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCST---------   83 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~---------   83 (98)
                      .+..+|.|.+++.+ |+|.|+|.+.+.   .......+.|.|..++  ..+.......+.+|+.+.|.|.+         
T Consensus        58 ~~~~~L~i~~~~~~-d~G~Y~C~~~n~---~g~~~~~~~l~v~~~~--~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~  131 (317)
T 2y25_A           58 DGICTLLITEFSKK-DAGIYEVILKDD---RGKDKSRLKLVDEAFK--ELMMEVCKKIALSATDLKIQSTAEGIQLYSFV  131 (317)
T ss_dssp             -CCEEEEETTCCST-TCSCEEEEEESS---SCEEEEEECCSTHHHH--HHHHHHHHHHHTCBCCCEEEECSSEEEEEEEB
T ss_pred             CCeEEEEEccCCcc-cCeEEEEEEECC---CCcEEEEEEEEEecCc--cccccCCceecccCCCeEEEeeccccEEEEEe
Confidence            45578999999999 999999999875   2233333333222111  11110012334455666666654         


Q ss_pred             CCCCCCCeEEEEec
Q psy5866          84 SGGSPDPQISVTLQ   97 (98)
Q Consensus        84 ~~~~p~~~~~W~~~   97 (98)
                      ..+.|.+.+.|+++
T Consensus       132 ~~~~p~~~i~W~~~  145 (317)
T 2y25_A          132 TYYVEDLKVNWSHN  145 (317)
T ss_dssp             SSCCSSCEEEEEES
T ss_pred             ccCCCCcEEEEEEC
Confidence            33378999999975

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.71  E-value=4.8e-08  Score=54.25  Aligned_cols=47  Identities=15%  Similarity=0.338  Sum_probs=34.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI   63 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i   63 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+.    ......+.|.|..+|..+..
T Consensus        62 ~~~~~~L~I~~v~~~-DsG~Y~C~a~n~----g~~~~~~~l~V~~~P~~~~~  108 (124)
T 3rbg_A           62 SANQLSITVPNVTLQ-DEGVYKCLHYSD----SVSTKEVKVIVLATMKGEFC  108 (124)
T ss_dssp             ETTEEEEEESSCCGG-GCEEEEEEEESS----SEEEEEEEEEEECC------
T ss_pred             CCCEEEEEECCCChH-HCEEEEEEEEcC----CCCcEEEEEEEEeCCCCCcc
Confidence            345689999999999 999999999984    45666788889887765543

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=98.70  E-value=8.6e-08  Score=51.53  Aligned_cols=46  Identities=15%  Similarity=0.163  Sum_probs=36.3

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ++.+....+..+|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|.
T Consensus        53 ~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~   98 (100)
T 3knb_A           53 RFHIENTDDLTTLIIMDVQKQ-DGGLYTLSLGNE---FGSDSATVNIHIR   98 (100)
T ss_dssp             TEEEEECSSEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             eeeeecccceEEEEEcCCCcc-CCEEEEEEEEEC---CCEEEEEEEEEEE
Confidence            455555667788999999999 999999999995   4556666777764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.70  E-value=3.1e-08  Score=64.06  Aligned_cols=59  Identities=19%  Similarity=0.252  Sum_probs=30.6

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQIS   93 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~   93 (98)
                      +|.|.+++.+ |+|.|+|.|.+.   .+..+..+.+.|...+             .+|..+.+.|.+. |.|.|.+.
T Consensus       302 ~L~I~~v~~~-D~G~Y~C~a~N~---~g~~~~~~~l~V~~~~-------------~~g~~~~l~C~~~-g~P~P~i~  360 (361)
T 2xot_A          302 DLFFKKVQVE-DGGVYTCYAMGE---TFNETLSVELKVYNFT-------------LHGHHDTLNAAAD-PWSHPQFE  360 (361)
T ss_dssp             EEEESSCCTT-SCEEEEEEEECS---SCEEEEEEEEEEESSC-------------CC--------------------
T ss_pred             eEEEeecCcc-cCEEEEEEEecC---CCccEEEEEEEEEeee-------------ccCCceEEEEEeC-CCCCCccc
Confidence            6999999999 999999999985   4555666677774211             4677899999986 78888764

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=98.69  E-value=7.5e-08  Score=58.35  Aligned_cols=78  Identities=15%  Similarity=0.250  Sum_probs=50.0

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECC--CCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAG--SGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSG   85 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~--~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~   85 (98)
                      +...+.++|+|++++.+ |+|.|.|.+.+..  ...........|.|...  +..|.+......    ...++|.|.+.+
T Consensus        69 ~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~~----~~~~tl~Cl~~g  143 (210)
T 2eys_A           69 DADTKQSSLHITASQLS-DSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRDS----KSSDKSVCLFTD  143 (210)
T ss_dssp             ETTTTEEEEEESSCCGG-GCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEECCC----SSSSCEEEEEES
T ss_pred             cCCCCEEEEEEccCCcc-cCceEEEEEEccCCCcccceECCCEEEEEECCCCCCCCeEEecCCC----CCCceEEEEccc
Confidence            45677899999999999 9999999998631  11112223356777643  345655221111    126789999987


Q ss_pred             CCCCCeE
Q psy5866          86 GSPDPQI   92 (98)
Q Consensus        86 ~~p~~~~   92 (98)
                      ..|.+.+
T Consensus       144 f~P~~~v  150 (210)
T 2eys_A          144 FDSQTNV  150 (210)
T ss_dssp             CCTTCCC
T ss_pred             ccCCcEe
Confidence            7776543

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=98.68  E-value=1.1e-08  Score=61.68  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=53.0

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCCCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSGGSP   88 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p   88 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+...  ..........|.|...  +..|.+.......    ..++|.|.+.+..|
T Consensus        67 ~~~~~~sL~I~~l~~~-DsG~Y~Ca~~~~--~~~~fG~GT~L~V~~~~~~~~P~V~~~~~~~----~~~tl~Cl~~gf~P  139 (199)
T 3gsn_A           67 TKEGYSYLYIKGSQPE-DSATYLCARNTG--NQFYFGTGTSLTVIPNIQNPDPAVYQLRDSK----SSDKSVCLFTDFDS  139 (199)
T ss_dssp             TTTTEEEEEBSSCCGG-GCEEEEEEEESS--SCEEECSCEEEEEECCCSSCCCEEEECCCSS----SSSSCCEEEETCCT
T ss_pred             CCCCEEEEEEccCccc-CCccEEEEEccc--ccccCCCCEEEEEecccCCCCCEEEEcccCC----CCceEEEEeecccC
Confidence            5667899999999999 999999998642  1222233356777652  4456653211111    22578899998888


Q ss_pred             CCeEEEEec
Q psy5866          89 DPQISVTLQ   97 (98)
Q Consensus        89 ~~~~~W~~~   97 (98)
                      ..++.|+++
T Consensus       140 ~i~~~~~~~  148 (199)
T 3gsn_A          140 QTNVSQSKD  148 (199)
T ss_dssp             TCCSSCSSC
T ss_pred             CeEeEeccC
Confidence            557888654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.68  E-value=1e-08  Score=64.89  Aligned_cols=78  Identities=9%  Similarity=0.100  Sum_probs=47.3

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC-eEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPDP-QISVT   95 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~   95 (98)
                      .|.|.....+ |.|.|+|.+.+.............+.+. ...+|.+.... ..+.+|+.+.|.|.+.+..|++ .+.|+
T Consensus       181 ~L~i~~~~~d-~~g~Y~C~a~n~~~~~~~~~~~~~~~~~-v~~~P~i~~~~-~~~~~G~~v~l~C~~~g~~p~~~~v~W~  257 (327)
T 2wng_A          181 TAKVVLTRED-VHSQVICEVAHVTLQGDPLRGTANLSET-IRVPPTLEVTQ-QPVRAENQVNVTCQVRKFYPQRLQLTWL  257 (327)
T ss_dssp             EEEEECCTTG-GGCEEEEEEECTTSCSCCEEEEEEGGGT-BCBCCEEEEEE-ECCSSTTCCEEEEEEEEEBSSCEEEEEE
T ss_pred             EEEEechhcC-cCceEEEEEeccccCCCcccceEEeccc-cCCCCEEEEec-CCcCCCCcEEEEEEEccccCCCcEEEEE
Confidence            3667766666 7899999999864321122223333221 12334442111 1277999999999997435555 89999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       258 k~  259 (327)
T 2wng_A          258 EN  259 (327)
T ss_dssp             ET
T ss_pred             EC
Confidence            75

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.68  E-value=8.9e-08  Score=52.22  Aligned_cols=44  Identities=11%  Similarity=0.108  Sum_probs=34.4

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP   57 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~   57 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+.   .......+.|.|..+
T Consensus        68 ~~~~~~~sL~I~~~~~~-DsG~Y~C~v~~~---~~~~~~~v~L~V~~~  111 (113)
T 1zox_A           68 NQRDFIFTVTMEDLRMS-DAGIYWCGITKG---GLDPMFKVTVNIGPV  111 (113)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEECCS---SSCCEEEEEEEEECC
T ss_pred             CCcCCEEEEEEccCCHH-HCEEEEEeeEcC---CCCccEEEEEEEEcC
Confidence            35677899999999999 999999999874   234455677777643

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.67  E-value=6.2e-08  Score=63.03  Aligned_cols=80  Identities=16%  Similarity=0.248  Sum_probs=50.1

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEe-CCCCceecCCCcEEEEEEcCCCCC-CCeE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS-PGANPVATEGRAIELVCSTSGGSP-DPQI   92 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p-~~~~   92 (98)
                      ..+|+|.+++.+ |+|.|+|++.+..... .....+.+. .....+|.+. ........+|+.+.|.|.+.+.+| .+.+
T Consensus       232 ~s~L~I~~~~~~-D~g~Y~C~~~~~~~~~-~~~~~v~~~-~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v  308 (376)
T 2aty_A          232 VSELPIMHQDWL-NGKEFKCRVNSAAFPA-PIEKTISKT-KGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITV  308 (376)
T ss_pred             EEEEEechHhcc-CCCEEEEEEecCCCCC-ceEEEEcCC-CCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEE
Confidence            346999999999 9999999998853211 111112110 1122334431 113334456889999999986566 5689


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       309 ~W~k~  313 (376)
T 2aty_A          309 EWQWN  313 (376)
T ss_pred             EEEEC
Confidence            99985

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=98.67  E-value=5.3e-07  Score=53.83  Aligned_cols=63  Identities=14%  Similarity=0.207  Sum_probs=47.4

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEc
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCST   83 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~   83 (98)
                      .+...|.|.++... |+|.|+|.+.|.   .+..+..+.|.|..+|.+|....   . ...+..+.+.|..
T Consensus        73 ~~~~~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~v~~~P~~p~~~~---~-~~~~~~~~l~w~~  135 (215)
T 3mtr_A           73 PSASYLEVTPDSEN-DFGNYNCTAVNR---IGQESLEFILVQADTPSSPSIDQ---V-EPYSSTAQVQFDE  135 (215)
T ss_dssp             TTEEEEEECCCSGG-GCEEEEEEEECS---SCEEEEEEEEEECCCCCCCEEEE---E-EEETTEEEEEEEC
T ss_pred             CCeeEEEEecCChh-hCeEEEEEEEEC---CCceEEEEEEEECCCCCCCcceE---E-EEecceEEEEEec
Confidence            45678999999999 999999999985   44556678888887887776531   1 2345668888874

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=98.65  E-value=9.7e-08  Score=57.61  Aligned_cols=78  Identities=21%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECC---CCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAG---SGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTS   84 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~---~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~   84 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+....   ...........|.|...  +..|.+......    ...++|.|.+.
T Consensus        64 ~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~~----~~~v~L~C~~~  138 (206)
T 1kgc_D           64 AEDRKSSTLILHRATLR-DAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNPDPAVYQLRDS----KSSDKSVCLFT  138 (206)
T ss_dssp             CTTSSEEEEEESSCCGG-GCEEEEEECCCCSTTCCCCCCCCCCEEEEEECCCSSCCCEEEECCCC----TTCCCEEEEEE
T ss_pred             cCCCCEEEEEECCCCcc-cCccEEEEEecccCCCcccceECCCEEEEEeCCCCCCCCeEEeecCC----CCCeEEEEEee
Confidence            46677899999999999 9999999987521   00111112346777643  234555321111    13679999998


Q ss_pred             CCCCCCeE
Q psy5866          85 GGSPDPQI   92 (98)
Q Consensus        85 ~~~p~~~~   92 (98)
                      +..|.+.+
T Consensus       139 g~~P~~~V  146 (206)
T 1kgc_D          139 DFDSQTNV  146 (206)
T ss_dssp             SCCTTCCC
T ss_pred             ceeccccc
Confidence            88887744

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.65  E-value=5e-08  Score=54.54  Aligned_cols=38  Identities=16%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .++++|+|.+++.+ |+|.|+|.+.+.   ....+..+.|.|
T Consensus        81 ~g~~sL~I~~v~~~-D~G~Y~C~v~~~---~g~~~~~v~LkV  118 (125)
T 4gos_A           81 VGNASLRLKNVQLT-DAGTYKCYIITS---KGKGNANLEYKT  118 (125)
T ss_dssp             GTBCCEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEE
T ss_pred             CCeEEEEECCCChH-HCEEEEEEEEeC---CCeEEEEEEEEE
Confidence            45789999999999 999999999984   566666677766

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.64  E-value=3.1e-07  Score=51.27  Aligned_cols=48  Identities=10%  Similarity=0.211  Sum_probs=36.0

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP   61 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p   61 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+...   .......+.|.|..+|.+|
T Consensus        69 ~~~~~~~sL~I~~l~~~-Dsg~Y~C~~~~~---~~~~~~~v~L~V~~~~~~~  116 (124)
T 2nms_A           69 NQKNRTFTVTMEDLMKT-DADTYWCGIEKT---GNDLGVTVQVTIDPAPVTQ  116 (124)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECCC---
T ss_pred             cCcCCEEEEEEeCCCHH-HCEEEEEEEEcC---CCCccEEEEEEEeCCCcCC
Confidence            45678899999999999 999999999874   3344556788887665544

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.63  E-value=3.9e-08  Score=54.32  Aligned_cols=43  Identities=14%  Similarity=0.235  Sum_probs=32.2

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP   60 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~   60 (98)
                      +++|+|.+++.+ |+|.|+|.+.+..  ....+..+.|.|++||.+
T Consensus        70 ~~sL~I~~v~~~-D~G~Y~C~v~~~~--~g~~~~~~~L~V~~pp~~  112 (117)
T 3q0h_A           70 GLGLTLQSLTVN-DTGEYFCIYHTYP--DGTYTGRIFLEVLESSVA  112 (117)
T ss_dssp             TTCEEECSCCGG-GCEEEEEEEEEET--TCCEEEEEEEEEECC---
T ss_pred             ceEEEEeeCChh-hCEEEEEEEEECC--CCCeEEEEEEEEEccCcc
Confidence            457999999999 9999999987632  245566788999877654

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.62  E-value=2.7e-07  Score=50.67  Aligned_cols=44  Identities=18%  Similarity=0.310  Sum_probs=36.0

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP   60 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~   60 (98)
                      .+.++|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|..+|.+
T Consensus        70 ~~~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           70 TGRVTLLIKDVNKK-DAGWYTVSAVNE---AGVTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             TCEEEEEEEEECGG-GCEEEEEEEEET---TEEEEEEEEEEEECCSCC
T ss_pred             CCeEEEEECCCCcc-cCEEEEEEEEcC---CCeEEEEEEEEEeCCCCC
Confidence            35668999999999 999999999995   456667788888876654

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=98.62  E-value=4.9e-08  Score=58.41  Aligned_cols=77  Identities=16%  Similarity=0.196  Sum_probs=48.8

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECC--CCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAG--SGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSGG   86 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~--~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~~   86 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+....  ...........|.|...  +..|.+.....    ....++|.|.+.+.
T Consensus        68 ~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~----~~~~~tL~Cl~~gf  142 (194)
T 1lp9_E           68 KSSSSFHLQKSSAQLS-DSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQNPEPAVYQLKD----PRSQDSTLCLFTDF  142 (194)
T ss_dssp             GGGTBCCEEESSCCGG-GCEEEEEEEEECSSSSCEEEECCCEEEEEECCCSSCCCEEEEEEC----TTSSSCEEEEEESC
T ss_pred             CCCCEEEEEEcccCcc-cCeeEEEEEecccCCcceeeeccCceEEecCcCCCCCCeeEecCC----CCCCcEEEEEeecc
Confidence            3456788999999999 9999999998621  01112223457777643  23455521111    11257999999877


Q ss_pred             CCCCeE
Q psy5866          87 SPDPQI   92 (98)
Q Consensus        87 ~p~~~~   92 (98)
                      .|.+.+
T Consensus       143 ~P~~~V  148 (194)
T 1lp9_E          143 DSQINV  148 (194)
T ss_dssp             CTTSCC
T ss_pred             cCCccc
Confidence            887755

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=98.62  E-value=5.6e-08  Score=59.07  Aligned_cols=83  Identities=13%  Similarity=0.111  Sum_probs=52.1

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCC--CCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGS--GQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSG   85 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~--~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~   85 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.....  ..........|.|...  +..|.+......   + ..++|.|.+.+
T Consensus        67 ~~~~~~~sL~I~~lq~~-DsG~Y~Ca~~~~~~~~~~~~fG~GT~L~V~~~~~~~~PsVf~l~~~---~-~~~tl~Cl~~~  141 (208)
T 4ei6_A           67 NKASLHVSLHIRDSQPS-DSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLRDS---K-SSDKSVCLFTD  141 (208)
T ss_dssp             BTTTTBC-CEECSCCGG-GCEEEEEEEEECCSSCCCCEECCCEEEEEECCCSSCCCEEEEEEBS---S-CTTCEEEEEES
T ss_pred             cCCCCEEEEEEEeCccc-CCCcEEEEEecCCCccccccCCCCEEEEEeCcccCCCCEEEEcccC---C-CCceEEEEeec
Confidence            45677899999999999 99999999875210  0112223346777642  344555211111   1 12578999998


Q ss_pred             CCCCCeEEEEec
Q psy5866          86 GSPDPQISVTLQ   97 (98)
Q Consensus        86 ~~p~~~~~W~~~   97 (98)
                      ..|..++.|.++
T Consensus       142 f~P~i~v~~~~~  153 (208)
T 4ei6_A          142 FDSQTNVSQSKD  153 (208)
T ss_dssp             CCTTCCCCCCSS
T ss_pred             cCCceEeeeccc
Confidence            888567888754

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.60  E-value=4.9e-08  Score=54.25  Aligned_cols=48  Identities=25%  Similarity=0.261  Sum_probs=38.4

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEe
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKIS   64 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~   64 (98)
                      ++.+|+|.+++.+ |+|.|+|.+.+..  .......+.|.|+.++..|.|.
T Consensus        71 ~~~sL~I~nv~~~-DsG~Y~c~v~~~~--~~~~~~~~~L~V~~~~~~P~I~  118 (121)
T 2edo_A           71 QSGALYISKVQKE-DNSTYIMRVLKKT--GNEQEWKIKLQVLDPVPKPVIK  118 (121)
T ss_dssp             TTCCEEESSCCGG-GCSEEEEEEEETT--TEEEECCEECEEECCSCCCCCC
T ss_pred             CCceEEEeCCCHH-HCeEEEEEEEcCC--CcEEEEEEEEEEECCCCCCEEE
Confidence            3457999999999 9999999998742  2456667899999888877763

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=1.2e-07  Score=51.21  Aligned_cols=46  Identities=22%  Similarity=0.333  Sum_probs=36.9

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP   61 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p   61 (98)
                      ..+..+|+|.+++.+ |+|.|+|.+.|.   ....+..+.|.|..+|.+|
T Consensus        62 ~~~~~~L~i~~v~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           62 ENGVHSLIIEPVTSR-DAGIYTCIATNR---AGQNSFSLELVVAAKESGP  107 (110)
T ss_dssp             TTSCEEEEESSCCGG-GCSBBCEEEECS---SCEEEECCEEEEECCCCSS
T ss_pred             cCCeEEEEEeeCCcc-cCEEEEEEEECC---CCEEEEEEEEEEeCCCCCC
Confidence            345678999999999 999999999985   3456677888888776654

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.60  E-value=3.1e-07  Score=48.99  Aligned_cols=47  Identities=23%  Similarity=0.268  Sum_probs=35.7

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      ++......+..+|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|..
T Consensus        54 ~~~~~~~~~~~~L~i~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           54 KIHYTNTSGVLTLEILDCHTD-DSGTYRAVCTNY---KGEASDYATLDVTG  100 (103)
T ss_dssp             SEEEEEETTEEEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEC
T ss_pred             CEEEEECCCEEEEEEcCCCcc-cCEEEEEEEEeC---CCcEEEEEEEEEEC
Confidence            344444456678999999999 999999999995   45566667777753

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.59  E-value=4.2e-08  Score=58.62  Aligned_cols=75  Identities=11%  Similarity=0.263  Sum_probs=41.9

Q ss_pred             EEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE--eCCCCceecCCCcEEEEEEcCCCCCC-CeEEEE
Q psy5866          19 IISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI--SPGANPVATEGRAIELVCSTSGGSPD-PQISVT   95 (98)
Q Consensus        19 ~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~   95 (98)
                      .|....++ |+|.|+|.+.+..... .....+.+ +.....+|.+  .. .......|..+.|.|.+.+.+|+ +.+.|+
T Consensus        71 ~i~~~d~~-d~g~Y~C~a~n~~~~~-~~~~~v~~-~~~~~~~P~v~~~~-~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~  146 (207)
T 1l6x_A           71 TVLHQDWL-NGKEYKCKVSNKALPA-PIEKTISK-AKGQPREPQVYTLP-PSRDELTKNQVSLTCLVKGFYPSDIAVEWE  146 (207)
T ss_dssp             ECCHHHHH-TTCCEEEEEECTTSSS-CEEEEECC-CCSCCBCCEEEEEC-CCGGGGGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEHHHcc-CCceEEEEEEcCcCCc-ceEEEecc-CCCCCcCCEEEEEC-CChHHhcCCcEEEEEEEeCeECCCeEEEEE
Confidence            34455555 6999999999853311 11221211 0012233443  22 22222345669999999755665 489999


Q ss_pred             ec
Q psy5866          96 LQ   97 (98)
Q Consensus        96 ~~   97 (98)
                      ++
T Consensus       147 k~  148 (207)
T 1l6x_A          147 SN  148 (207)
T ss_dssp             ET
T ss_pred             EC
Confidence            75

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.59  E-value=1.3e-07  Score=51.42  Aligned_cols=41  Identities=24%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      +++|+|.+++.+ |+|.|+|.+.+..  .......+.|.|+++|
T Consensus        78 ~~sL~I~~v~~~-D~G~Y~C~v~~~~--~~~~~~~~~L~V~~~P  118 (118)
T 3udw_C           78 NASLRMFGLRVE-DEGNYTCLFVTFP--QGSRSVDIWLRVLAKP  118 (118)
T ss_dssp             BCCEEECSCCGG-GCEEEEEEEEEET--TEEEEEEEEEEEEC--
T ss_pred             CcEEEEeecChH-HCeEEEEEEEECC--CCCccceEEEEEEeCC
Confidence            778999999999 9999999998731  3466667788887654

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=98.58  E-value=2.6e-08  Score=61.14  Aligned_cols=77  Identities=13%  Similarity=0.198  Sum_probs=49.6

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSGGS   87 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~   87 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+....  .........|.|...  +..|.+.....    ....++|.|.+.+..
T Consensus        67 ~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~~~--~~~~g~gt~L~V~~~~~~~~P~V~~~~~----~~~~~tL~Cl~~gf~  139 (229)
T 2q86_A           67 DKDAKHSTLHITATLLD-DTATYFCVVGDRG--SALFGSGTQLIVIPYIQNPEPAVYQLKD----PRSQDSTLCLFTDFD  139 (229)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEESCGG--GCEECCCEEEEEECCCSSCCCEEEEEEC----TTSTTCEEEEEEEEC
T ss_pred             cCCCCEEEEEEcccCcc-cCccEEEEEEecC--cccccCCEEEEEECcCCCCCCEEEEccC----CCCCeEEEEEECCcC
Confidence            45677899999999999 9999999987521  111222346777643  34455522111    112678999987667


Q ss_pred             CCCeEE
Q psy5866          88 PDPQIS   93 (98)
Q Consensus        88 p~~~~~   93 (98)
                      |.+.+.
T Consensus       140 P~p~V~  145 (229)
T 2q86_A          140 SQINVP  145 (229)
T ss_dssp             TTCCCC
T ss_pred             cCCccc
Confidence            776553

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.58  E-value=3.2e-07  Score=48.45  Aligned_cols=46  Identities=22%  Similarity=0.344  Sum_probs=34.6

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ++.+....+..+|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|.
T Consensus        52 ~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~   97 (99)
T 3puc_A           52 KYKLSEDKGGFFLEIHKTDTS-DSGLYTCTVKNS---AGSVSSSCKLTIK   97 (99)
T ss_dssp             SEEEEEETTEEEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             CEEEEEeCCEEEEEECCCCcc-cCEEEEEEEEeC---CCcEeEEEEEEEE
Confidence            344444456678999999999 999999999985   4555666666664

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.58  E-value=3.3e-07  Score=51.61  Aligned_cols=41  Identities=24%  Similarity=0.472  Sum_probs=33.7

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP   57 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~   57 (98)
                      .++++|+|.+++.+ |+|.|+|.+.+.   .......+.|.|..|
T Consensus        82 ~~~~sL~I~~v~~~-D~G~Y~C~v~~~---~~~~~~~~~L~V~~P  122 (139)
T 1pko_A           82 EGKVALRIQNVRFS-DEGGYTCFFRDH---SYQEEAAVELKVEDP  122 (139)
T ss_dssp             GTEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECT
T ss_pred             CCeEEEEEccCCHH-HCEEEEEEEEcC---CCceEEEEEEEEecC
Confidence            45789999999999 999999999985   345666788888743

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.58  E-value=3.2e-07  Score=51.47  Aligned_cols=52  Identities=13%  Similarity=0.164  Sum_probs=37.5

Q ss_pred             EEEE--eCCCCeEEEEEccceeeccCeEEEEEEEECCCCC-eeeEeeEEEEEECCC
Q psy5866           6 IIDY--RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQ-DLHSQVYTVTVLTPP   58 (98)
Q Consensus         6 ~~~~--~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~-~~~~~~~~l~v~~~~   58 (98)
                      ||..  +...+.++|+|.+++.+ |+|.|.|.+.+..... ...+..+.|.|...+
T Consensus        63 Rf~~~~~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~  117 (129)
T 3rrq_A           63 RFRVTQLPNGRDFHMSVVRARRN-DSGTYLCGAISLAPKLQIKESLRAELRVTERR  117 (129)
T ss_dssp             CEEEEECTTSSEEEEEESSCCGG-GCEEEEEEEEECGGGCEEEECCCEEEEEECCC
T ss_pred             cEEEEEcCCCCEEEEEECCCChh-HCEEEEEEEEecCCCceeeEeceEEEEEecCc
Confidence            4444  35677899999999999 9999999998853211 223456788887544

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.58  E-value=1.6e-07  Score=50.32  Aligned_cols=41  Identities=24%  Similarity=0.436  Sum_probs=32.8

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      .+..+|.|.+++.+ |+|.|+|.+.+    ....+..+.|.|..+|
T Consensus        68 ~~~~~L~I~~v~~~-D~G~Y~C~~~n----~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           68 WHELSISVSDVSLS-DEGQYTCSLFT----MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             SSEEEEEECSCCGG-GCEEEEEEECS----SSCEEEEEEEEEECCC
T ss_pred             CCcEEEEECCCChh-HCeEEEEEEEc----CCCcEEEEEEEEEcCC
Confidence            36789999999999 99999999987    2345566778887554

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.57  E-value=1.2e-07  Score=51.83  Aligned_cols=40  Identities=25%  Similarity=0.524  Sum_probs=32.6

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      .+.++|+|.+++.+ |+|.|+|.+.+.   .......+.|.|++
T Consensus        86 ~~~~sL~I~~v~~~-D~G~Y~C~v~~~---~~~~~~~~~L~V~~  125 (126)
T 1eaj_A           86 SGDASINVTNLQLS-DIGTYQCKVKKA---PGVANKKIHLVVLV  125 (126)
T ss_dssp             GTBCCEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEC
T ss_pred             CCeEEEEECcCChH-HCeEEEEEEEcC---CccCCcEEEEEEEc
Confidence            44578999999999 999999999984   45556677888764

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=9.7e-08  Score=51.10  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=35.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP   61 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p   61 (98)
                      ++.+........|.|.+++.+ |+|.|+|.+.+       .+..+.|.|..+|..|
T Consensus        53 ~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n-------~~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           53 KYDVVCEGTMAMLVIRGASLK-DAGEYTCEVEA-------SKSTASLHVEEKASGP  100 (103)
T ss_dssp             SEEEEEETTEEEEEESSCCTT-TCSEEEEECSS-------CEEEEEEEECCCSSSS
T ss_pred             CEEEEECCCEEEEEECCCCcc-cCEEEEEEEcc-------CCcEEEEEEeCCCCCC
Confidence            444444455678999999999 99999999976       2456788887666543

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.54  E-value=7.9e-07  Score=49.46  Aligned_cols=49  Identities=20%  Similarity=0.408  Sum_probs=35.0

Q ss_pred             eEEEE--eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           5 EIIDY--RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         5 ~~~~~--~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .|+.+  +...+.++|+|.+++.+ |+|.|.|.+.............+.|.|
T Consensus        71 ~R~~~~~~~~~~~~sL~I~~l~~~-Dsg~Y~C~v~~~~~~~~~~~~~l~L~V  121 (122)
T 1hkf_A           71 SRFTIWDDPDAGFFTVTMTDLREE-DSGHYWCRIYRPSDNSVSKSVRFYLVV  121 (122)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGG-GCEEEEEEEECTTTCCEEEEEEEEEEE
T ss_pred             CcEEEEEcCcCCEEEEEEeCCCHH-HCEEEEEEEEcCCCCcccccEEEEEEe
Confidence            34444  66788999999999999 999999999875322334444445444

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.54  E-value=8.5e-08  Score=50.15  Aligned_cols=45  Identities=20%  Similarity=0.325  Sum_probs=32.9

Q ss_pred             ceeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           3 KVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         3 ~~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .+.++......+...|.|.+++.+ |+|.|+|.+.+.       +..+.|+|.
T Consensus        38 ~~~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~n~-------~~~a~l~V~   82 (84)
T 2lu7_A           38 SQGRVQLEQAGARQVLRVQGARSG-DAGEYLCDAPQD-------SRIFLVSVE   82 (84)
T ss_dssp             CCSSEEEEECSSCEEEEESSCSST-TCEEEEEECTTT-------CEEEEEEEC
T ss_pred             ccccEEEeecCCeEEEEecCCCCc-ccEEEEEEECCE-------EEEEEEEEE
Confidence            344555555667788999999999 999999987542       234566664

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.53  E-value=2.5e-06  Score=53.08  Aligned_cols=66  Identities=15%  Similarity=0.227  Sum_probs=46.1

Q ss_pred             CCCCeEEEEEcc-ceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEc
Q psy5866          11 PDSGRYDLIISN-ASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCST   83 (98)
Q Consensus        11 ~~~~~~~l~I~~-v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~   83 (98)
                      ...+..+|.|.+ +... |+|.|+|.+.|.   .+.....+.|.|..+|.+|...   ......+..+.|+|..
T Consensus       155 ~~~~~~~l~i~~~~~~~-d~G~Y~C~a~N~---~G~~~~~~~l~v~~~P~~p~~~---~~~~~~~~~v~l~w~~  221 (305)
T 2nzi_A          155 VTRSFTSLVFPNGVERK-DAGFYVVCAKNR---FGIDQKTVELDVADVPDPPRGV---KVSDVSRDSVNLTWTE  221 (305)
T ss_dssp             ECSSEEEEEETTCCCST-TCEEEEEEEEET---TEEEEEEEEEEEEBCCCCCEEE---EEESCCSSCEEEEEEC
T ss_pred             EcCCceEEEEecCCccC-ccEEEEEEEEeC---CCceeeEEEEEEecCCCCCCCc---eeeeccCCEEEEEEcC
Confidence            334567899999 9999 999999999995   4566667888888777766531   1122234556666653

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=2.9e-07  Score=50.44  Aligned_cols=46  Identities=13%  Similarity=0.208  Sum_probs=35.4

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      +....+...|.|.++..+ |+|.|+|.+.|.   ....+..+.|.|..+|
T Consensus        72 ~~~~~~~~~L~i~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           72 VRTSDFDTVFFVRQAARS-DSGEYELSVQIE---NMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EEECSSEEEEEESSCCTT-TCEEEEEEEECS---SCEECCEEEEEEECCC
T ss_pred             EEECCCeEEEEECCCChh-cCEEEEEEEEeC---CCeEEEEEEEEEEcCC
Confidence            334455677999999999 999999999986   3456666788887554

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.53  E-value=1e-07  Score=62.94  Aligned_cols=76  Identities=12%  Similarity=0.131  Sum_probs=46.6

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC--------------CCCCEE-eCCCCc--eecCCCcEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP--------------PQPPKI-SPGANP--VATEGRAIEL   79 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~--------------~~~p~i-~~~~~~--~~~~g~~~~l   79 (98)
                      .|+|.++..+ | |.|+|.+.+...   .......+.+...              ...|.+ ...+..  .+.+|+.+.|
T Consensus       195 ~L~i~~~~~~-d-G~Y~C~a~n~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L  269 (457)
T 1hzh_H          195 VVTVPSSSLG-T-QTYICNVNHKPS---NTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEV  269 (457)
T ss_dssp             EEEECSGGGG-T-SCCEEEEEEGGG---TEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCE
T ss_pred             EEEecccccC-C-ceEEEEEEeCCC---CcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEE
Confidence            6899999998 9 999999998522   2112222221110              012333 111222  2678999999


Q ss_pred             EEEcCCCCCCC---eEEEEec
Q psy5866          80 VCSTSGGSPDP---QISVTLQ   97 (98)
Q Consensus        80 ~C~~~~~~p~~---~~~W~~~   97 (98)
                      .|.+.+..|.|   .+.|+++
T Consensus       270 ~C~~~g~~p~p~~~~i~W~k~  290 (457)
T 1hzh_H          270 TCVVVDVSHEDPEVKFNWYVD  290 (457)
T ss_dssp             EEEEECCCTTCCCCEEEEEET
T ss_pred             EEEEEcccCCCCceEEEEEeC
Confidence            99997433443   8999975

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=1.3e-07  Score=51.15  Aligned_cols=45  Identities=18%  Similarity=0.243  Sum_probs=35.6

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP   61 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p   61 (98)
                      .+.+.|.|.+++.+ |+|.|+|.+.|.   ....+..+.|.|..++..|
T Consensus        63 ~~~~~L~i~~v~~~-D~G~Y~C~a~N~---~g~~~~~~~l~V~~~~~~P  107 (110)
T 2dm2_A           63 DGTCSLHTTASTLD-DDGNYTIMAANP---QGRISCTGRLMVQAVNSGP  107 (110)
T ss_dssp             TCEEEEEESSCCTT-TCSCCEEEEECT---TCCEEECCCEEEECCSCCS
T ss_pred             CcEEEEEECCCChh-hCEEEEEEEEEC---CCeEEEEEEEEEECCCCCC
Confidence            55678999999999 999999999986   3445666778887766654

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.53  E-value=3.3e-07  Score=48.42  Aligned_cols=46  Identities=15%  Similarity=0.217  Sum_probs=34.1

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ++.+....+..+|.|.+++.+ |+|.|+|.+.+.   .......+.|.|.
T Consensus        48 ~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~   93 (97)
T 2bk8_A           48 KYEITYEDGVAILYVKDITKL-DDGTYRCKVVND---YGEDSSYAELFVK   93 (97)
T ss_dssp             SEEEEEETTEEEEEECSCCGG-GCEEEEEEEECS---SCEEEEEEEEEET
T ss_pred             CEEEEEcCCeEEEEEecCChh-hCeEEEEEEECC---CCeEeEEEEEEEE
Confidence            444444566778999999999 999999999985   4455555666664

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.52  E-value=1.5e-07  Score=51.81  Aligned_cols=44  Identities=23%  Similarity=0.307  Sum_probs=30.7

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      .++++|+|.+++.+ |+|.|+|.+.+.... ......+.|.|..+|
T Consensus        78 ~~~~sL~I~~v~~~-D~G~Y~C~v~~~~~~-~~~~~~v~L~V~~~p  121 (124)
T 1neu_A           78 WKDGSIVIHNLDYS-DNGTFTCDVKNPPDI-VGKTSQVTLYVFEKV  121 (124)
T ss_dssp             GTBCCEEECSCCGG-GCEEEEEEEEC-----CCEEEEEEEEEEC--
T ss_pred             CCeEEEEEccCChh-hCEEEEEEEEcCCCC-cCcEeeEEEEEecCC
Confidence            45678999999999 999999999874221 124556788887543

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=8.9e-08  Score=51.33  Aligned_cols=44  Identities=36%  Similarity=0.686  Sum_probs=33.7

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP   61 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p   61 (98)
                      ........|.|.+++.+ |+|.|+|.+.+.       ...+.|.|..+|.+|
T Consensus        59 ~~~~~~~~L~I~~~~~~-D~G~Y~C~a~n~-------~~~~~l~V~~~P~pp  102 (104)
T 2e6p_A           59 KMDGRKHRLILPEAKVQ-DSGEFECRTEGV-------SAFFGVTVQDPSGPS  102 (104)
T ss_dssp             EEETTEEEEEESSCCTT-TCEEEEEECSSC-------CCCEEEEEECCCCSS
T ss_pred             EeCCCEEEEEECCCChh-hCEEEEEEECCc-------eEEEEEEEcCCCCCc
Confidence            33455678999999999 999999999873       225678888777654

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=1.9e-07  Score=51.17  Aligned_cols=54  Identities=17%  Similarity=0.192  Sum_probs=37.0

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEG   74 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g   74 (98)
                      +|+|.+++.+ |+|.|+|.+.|.   .......+.|.|..++.+.......+..+.+|
T Consensus        63 ~L~i~~v~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~p~~~~~~~~~~~~~G  116 (118)
T 2eo9_A           63 VLQIRYAKLG-DTGRYTCIASTP---SGEATWSAYIEVQEFGVPVQPPRPTDPNLIPS  116 (118)
T ss_dssp             EEEEESCCGG-GCCCEEEEEECS---SCEEEEECCEEEECCSCCCCCCCCCCCCCCCC
T ss_pred             EEEEccCCcC-CCEEEEEEEEcC---CCcEEEEEEEEEEeCCCCccCCCCCCCccCCC
Confidence            6999999999 999999999985   34455567788876654333322233444444

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=98.49  E-value=3.1e-07  Score=55.21  Aligned_cols=77  Identities=14%  Similarity=0.176  Sum_probs=47.0

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECC-CCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAG-SGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSGG   86 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~-~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~~   86 (98)
                      +...+.++|+|++++.+ |+|.|.|.+.... ...........|.|...  +..|.+....  .  ....++|.|.+.+.
T Consensus        64 ~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~--~--~~~~~tl~Cl~~gf  138 (200)
T 2nw2_A           64 SRSKGYSYLLLKELQMK-DSASYLCAVQASGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLR--D--SKSSDKSVCLFTDF  138 (200)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEC---CCCCCEECCCEEEEEECCCSSCCCEEEEEE--E--CC--CCEEEEEESC
T ss_pred             cCCCCEEEEEECccCcc-cCCcEEEEEEcCCcceeeeeCCCEEEEEecCcccCCCeEEEcC--C--CCCCceEEEEeecc
Confidence            45677899999999999 9999999987511 01112223346777643  3456552111  1  11267899999877


Q ss_pred             CCCCe
Q psy5866          87 SPDPQ   91 (98)
Q Consensus        87 ~p~~~   91 (98)
                      .|...
T Consensus       139 ~P~~~  143 (200)
T 2nw2_A          139 DSQTN  143 (200)
T ss_dssp             CTTCC
T ss_pred             cCCcE
Confidence            77643

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.49  E-value=1e-07  Score=60.83  Aligned_cols=77  Identities=14%  Similarity=0.243  Sum_probs=45.0

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE-------------------ECCCCCCEE--eCCCCceecCCC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV-------------------LTPPQPPKI--SPGANPVATEGR   75 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v-------------------~~~~~~p~i--~~~~~~~~~~g~   75 (98)
                      .|+|.++..+ | |.|+|.+.+..+. ......+.+.|                   .....+|.+  .. ......+|.
T Consensus       183 ~L~i~~~~~~-d-G~Y~C~a~n~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~-~~~~~~~~~  258 (344)
T 1za6_B          183 VVTVPSSSLG-T-QTYICNVNHKPSN-TKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLP-PSRDELTKN  258 (344)
T ss_dssp             EEEEETTHHH-H-BCEEEEEEEGGGT-EEEEEEECCCCC--------------------CCBCCEEEEEC-CCGGGGGSS
T ss_pred             EEEEcHHHcC-C-CcEEEEEEeCCCC-ccceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeC-CChHhccCC
Confidence            6889999998 8 9999999985321 11111111111                   011233443  22 222233566


Q ss_pred             cEEEEEEcCCCCC-CCeEEEEec
Q psy5866          76 AIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        76 ~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      .+.|.|.+.+..| .+.+.|+++
T Consensus       259 ~~~L~C~~~g~~P~~~~v~W~k~  281 (344)
T 1za6_B          259 QVSLTCLVKGFYPSDIAVEWESN  281 (344)
T ss_dssp             SEEEEEEEEEEBSSCCEEEEESS
T ss_pred             cEEEEEEEeeEECCCeEEEEEEC
Confidence            7999999975455 468999875

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=9.1e-08  Score=51.70  Aligned_cols=47  Identities=15%  Similarity=0.244  Sum_probs=34.3

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP   60 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~   60 (98)
                      ++.+....+..+|.|.+++.+ |+|.|+|.+.+       ....+.|.|..+|..
T Consensus        55 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~~-------~~~~a~L~V~~~p~~  101 (104)
T 2eny_A           55 RFQATRQGRKYILVVREAAPS-DAGEVVFSVRG-------LTSKASLIVRERSGP  101 (104)
T ss_dssp             SCEEEEETTEEEEEECSCCTT-TCSCEEEEETT-------EEEEECEEEECCCSS
T ss_pred             CEEEEEcCCEEEEEECCCCHH-HCEEEEEEECC-------eeEEEEEEEeCCCcC
Confidence            444444456778999999999 99999998743       234677888766543

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.49  E-value=9.1e-07  Score=46.70  Aligned_cols=45  Identities=18%  Similarity=0.188  Sum_probs=33.9

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +......+..+|.|.+++.+ |+|.|+|.+.|.   .......+.|.|.
T Consensus        53 ~~~~~~~~~~~L~i~~~~~~-D~G~Y~C~a~N~---~g~~~~~~~l~V~   97 (99)
T 1u2h_A           53 FAEEAEGGLCRLRILAAERG-DAGFYTCKAVNE---YGARQCEARLEVR   97 (99)
T ss_dssp             EEEECGGGEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             EEEECCCCEEEEEEccCCcC-CCEEEEEEEEEC---CCceeEEEEEEEE
Confidence            33444455668999999999 999999999995   4555566677664

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.48  E-value=1e-06  Score=46.63  Aligned_cols=40  Identities=23%  Similarity=0.316  Sum_probs=32.6

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      .+..+|.|.+++.. |+|.|+|.+.|.   .+..+..+.|.|..
T Consensus        59 ~~~~~L~i~~v~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           59 KGLHSLIFEVVRAS-DAGAYACVAKNR---AGEATFTVQLDVLA   98 (100)
T ss_dssp             TTEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEC
T ss_pred             CCeEEEEECCCCcc-cCEEEEEEEEcC---CCeEEEEEEEEEEe
Confidence            45568999999999 999999999995   45566677777763

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.48  E-value=1.9e-07  Score=57.08  Aligned_cols=65  Identities=17%  Similarity=0.196  Sum_probs=27.1

Q ss_pred             ceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCC-----CCeEEEEec
Q psy5866          23 ASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSP-----DPQISVTLQ   97 (98)
Q Consensus        23 v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~   97 (98)
                      ++.+ |+|.|+|.+..    ...  ..+.+.+..  .+..........+.+|+.+.|.|.+. +.|     .+.+.|+++
T Consensus        11 v~~~-dsg~Y~C~a~g----~~~--~~~~~~~~~--~~~~~~~p~~~~v~~G~~v~L~C~~~-~~~~~~~~~~~v~W~k~   80 (254)
T 2c1o_A           11 VRPG-TSVKLSCKASG----YSF--TNYWMNWLR--ELVMTQSPLTLSVTIGQPASISCKSS-QSLLYSNGKTYLNWLLQ   80 (254)
T ss_dssp             ------------------------------------CCCEEEECSEEEECTTSCEEEEEEES-SCCBCSSSCBCEEEEEE
T ss_pred             ecCC-ccEEEEEcCch----hhh--hhhhhheee--ceeEEeCCceEEecCCCcEEEEeecc-CcccccCCCCceEEEEe
Confidence            6788 99999999972    111  122222222  22233323567899999999999986 455     389999974

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=1.9e-07  Score=51.95  Aligned_cols=39  Identities=23%  Similarity=0.372  Sum_probs=32.9

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP   57 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~   57 (98)
                      .++|+|.++... |+|.|+|.+.+.   ....+..+.|+|..+
T Consensus        79 ~~~L~I~~v~~~-D~G~Y~Cevsn~---~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           79 TVELHIGKVVLG-DRGYYRLEVKAK---DTCDSCGFNIDVEAP  117 (118)
T ss_dssp             EEEEEESSCCTT-TCSCEEEEEECS---SCEEEEEECCEEECC
T ss_pred             eEEEEEeeCChh-hCEEEEEEEEEc---CCcEEEEEEEEEEcC
Confidence            688999999999 999999999996   456777788888643

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.47  E-value=2.5e-07  Score=51.37  Aligned_cols=41  Identities=22%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..++++|+|.+++.+ |+|.|+|.+.+..  .......+.|+|+
T Consensus        76 ~~~~~sL~I~~v~~~-DsG~Y~C~v~t~~--~g~~~~~~~L~Vl  116 (123)
T 4gjt_B           76 NPLDGSVLLRNAVQA-DEGEYECRVSTFP--AGSFQARLRLRVL  116 (123)
T ss_dssp             CTTBCCEEEESCCSS-SCSEEEEEEEESS--SCEEEEEEEEEC-
T ss_pred             cCCEEEEEECCCChH-HCEEEEEEEEECC--CCeEEeEEEEEEE
Confidence            456788999999999 9999999998742  2455566777775

>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 4e41_D 4e42_A 3rug_E* 3axl_A

Probab=98.47  E-value=2.9e-06  Score=51.40  Aligned_cols=75  Identities=17%  Similarity=0.263  Sum_probs=47.4

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC--CCCCCEEeCCCCceecCCCcEEEEEEcCCC
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT--PPQPPKISPGANPVATEGRAIELVCSTSGG   86 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~--~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~   86 (98)
                      .+...+.++|+|.+++.+ |+|.|.|.+...............|.|..  .+..|.+......    ...++|.|.+.+.
T Consensus        65 ~~~~~~~~sL~I~~l~~~-DsG~Y~Cav~~~~~~~~~fG~GT~L~V~~~~~~~~p~V~~l~~~----~~~~tl~Cl~~~f  139 (205)
T 3qjh_A           65 FDSKERYSTLHIRDAQLE-DSGTYFCAAEASNTNKVVFGTGTRLQVLPNIQNPDPAVYQLRDS----KSSDKSVCLFTDF  139 (205)
T ss_dssp             EETTTTEEEEEECSCCGG-GCEEEEEEEEETTTCCEEEBCCEEEEEECCCSSCCCEEEEEEBC----C--CCEEEEEESC
T ss_pred             EcCCCCEEEEEEeccccc-cCeEEEEEEEcCCCCccccCCCEEEEEeCcccCCCCEEEEeccc----CCCcEEEEEEEcc
Confidence            346678999999999999 99999999985321222333345777763  2344554211111    1236899999876


Q ss_pred             CC
Q psy5866          87 SP   88 (98)
Q Consensus        87 ~p   88 (98)
                      .|
T Consensus       140 ~P  141 (205)
T 3qjh_A          140 DS  141 (205)
T ss_dssp             CT
T ss_pred             cc
Confidence            66

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.47  E-value=5e-07  Score=48.84  Aligned_cols=38  Identities=18%  Similarity=0.399  Sum_probs=31.3

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +..+|+|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|.
T Consensus        70 ~~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~L~V~  107 (108)
T 3cx2_A           70 YLFELHITDAQPA-FTGSYRCEVSTK---DKFDCSNFNLTVH  107 (108)
T ss_dssp             EEEEEEECSCCGG-GCEEEEEEEECS---SCEEEEEEEEEEE
T ss_pred             ceEEEEEecCCCc-cCEEEEEEEecC---CCceEEEEEEEEe
Confidence            3578999999999 999999999985   4556666777764

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.46  E-value=9.5e-08  Score=58.92  Aligned_cols=77  Identities=12%  Similarity=0.271  Sum_probs=47.4

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE--eCCCCceecCCCcEEEEEEcCCCCCCC-eEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI--SPGANPVATEGRAIELVCSTSGGSPDP-QIS   93 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~   93 (98)
                      .|.|....++ |.|.|+|++.+.... ......+.+. .....+|.+  .. ......+|..+.|.|.+.+.+|.+ .+.
T Consensus        90 ~L~i~~~~~~-d~~~YtC~v~h~~~~-~~~~~~i~~~-~~~~~~P~V~v~~-~~~~~~~g~~~~L~C~~~gf~P~~i~v~  165 (240)
T 4acp_A           90 VLTVLHQDWL-NGKEYKCKVSNKALP-APIEKTISKA-KGQPREPQVYTLP-PSRDELTKNQVSLTCLVKGFYPSDIAVE  165 (240)
T ss_dssp             EEECCHHHHH-HTCCEEEEEECC-----CEEEEECCC-CSCCBCCEEEEEC-CCGGGGGSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEechhcc-CCCEEEEEEEcCCCC-cccccccccc-CCCCCCCEEEEEC-CChHHhcCCceEEEEEEeEEeCCCcEEE
Confidence            5788888888 999999999985321 1122222211 122334444  22 223334588999999998657764 899


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |+++
T Consensus       166 W~k~  169 (240)
T 4acp_A          166 WESN  169 (240)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9975

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.45  E-value=2.9e-07  Score=49.31  Aligned_cols=46  Identities=17%  Similarity=0.189  Sum_probs=34.2

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP   60 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~   60 (98)
                      +.+....+...|.|.+++.+ |+|.|+|.+.+       .+..+.|.|..+|.+
T Consensus        55 ~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~n-------~~~~~~l~V~~~p~p  100 (103)
T 1x44_A           55 YRIRVEGKKHILIIEGATKA-DAAEYSVMTTG-------GQSSAKLSVDLKSGP  100 (103)
T ss_dssp             EEEEEETTEEEEEEEEECTT-TCSEEEEEETT-------EEEEEEEEEECCCSC
T ss_pred             EEEEEcCCEEEEEECCCCcc-cCEEEEEEECC-------CcEEEEEEEeCCCCC
Confidence            34444445678999999999 99999999864       355677888766654

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.45  E-value=8.3e-08  Score=53.77  Aligned_cols=54  Identities=19%  Similarity=0.258  Sum_probs=35.0

Q ss_pred             EEEEe--CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeee-EeeEEEEEECCCCCC
Q psy5866           6 IIDYR--PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLH-SQVYTVTVLTPPQPP   61 (98)
Q Consensus         6 ~~~~~--~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~-~~~~~l~v~~~~~~p   61 (98)
                      |+.+.  ...+.++|+|.+++.+ |+|.|.|.+..... .... ...+.|.|..++..|
T Consensus        76 R~~~~~~~~~~~~sL~I~~v~~~-DsG~Y~C~v~~~~~-~~~~~~~~~~l~V~~~~~~p  132 (132)
T 1nko_A           76 RFHLLGDPQTKNCTLSIRDARMS-DAGRYFFRMEKGNI-KWNYKYDQLSVNVTALTHRP  132 (132)
T ss_dssp             TEEECSCGGGTBCCEEECSCCGG-GCEEEEEEEEETTE-EEECTTSCEEEEEECCC---
T ss_pred             cEEEeCCCCCCceEEEEcccCcc-cCeeEEEEEEcCCC-cccccCCceEEEecccCCCc
Confidence            44443  2456789999999999 99999999987420 1111 235677777665543

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.44  E-value=2.8e-07  Score=48.94  Aligned_cols=43  Identities=14%  Similarity=0.139  Sum_probs=31.3

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .++.+....+..+|.|.+++.+ |+|.|+|.+.+.       ...+.|.|.
T Consensus        49 ~~~~i~~~g~~~~L~I~~v~~~-D~G~Y~C~a~n~-------~~sa~L~V~   91 (93)
T 1waa_A           49 PDCEIIEDGKKHILILHNCQLG-MTGEVSFQAANT-------KSAANLKVK   91 (93)
T ss_dssp             TTEEEEEETTEEEEEECSCCGG-GCEEEEEEETTE-------EEEEEEEEE
T ss_pred             CCEEEEEECCEEEEEECCCChh-hCEEEEEEECCC-------cEEEEEEEE
Confidence            3444444456678999999999 999999998752       245667665

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=98.44  E-value=3.9e-07  Score=56.76  Aligned_cols=90  Identities=13%  Similarity=0.132  Sum_probs=53.3

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC---C-----------------CCCEEeC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP---P-----------------QPPKISP   65 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~---~-----------------~~p~i~~   65 (98)
                      ||....+..+++|+|++++.+ |++.|.|.......  ...-...+|.|...   |                 ....+..
T Consensus        61 RFSgS~Sgt~ftLtIs~lq~e-D~A~YyC~~~~~~~--~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~e  137 (259)
T 4f9l_D           61 RFSGSGSATGFTLTISSLQPE-DIATYYCQQGHSYP--YTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQE  137 (259)
T ss_dssp             TEEEEEETTEEEEEEESCCGG-GCEEEEEEECSSSS--CCBCCCCEECBCCC----------------------CCCEEE
T ss_pred             CEEeeccCCeEEEEEcccChh-hCEEEEEeecCCCC--CCccCCeEEEEeccccCccccccccccccccCCccccceEEe
Confidence            455555567899999999999 99999998654311  11111112222100   0                 0011111


Q ss_pred             CCCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          66 GANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        66 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      .....+++|..+.|+|.+.+..- .-.+.|+||.
T Consensus       138 SG~~lvkPG~Sl~LSC~aSG~tfs~y~~~WvRQa  171 (259)
T 4f9l_D          138 SGAELVKPGASVKLSCKASGYTFTRYYLYWVKQR  171 (259)
T ss_dssp             ECCCEEESSSCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             ECCCEECCCCcEEEEEeeeCCCcccCcEEEEEEC
Confidence            12356889999999999874332 2358899883

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.43  E-value=4.1e-07  Score=49.97  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=32.8

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ   59 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~   59 (98)
                      ..+|+|.+++.+ |+|.|+|.+.+.   .+.....+.|.|+.+|.
T Consensus        73 ~~~L~I~~v~~~-DsG~Y~C~a~n~---~g~~~~~~~l~V~~~p~  113 (122)
T 3s35_X           73 LSTLTIDGVTRS-DQGLYTCAASSG---LMTKKNSTFVRVHEKPF  113 (122)
T ss_dssp             EEEEEESSCCGG-GCEEEEEEEECS---SCEEEEEEEEEEEEEEC
T ss_pred             EEEEEECCCCcc-cCEEEEEEEccC---CCceEEEEEEEEeccCe
Confidence            457999999999 999999999985   45556677888875543

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.43  E-value=3.3e-07  Score=49.74  Aligned_cols=29  Identities=21%  Similarity=0.485  Sum_probs=25.6

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        62 ~~~~~~~~L~I~~~~~~-DsG~Y~C~~~~~   90 (110)
T 2q87_A           62 SPANLSFTVTLENLTEE-DAGTYWCGVDTP   90 (110)
T ss_dssp             EGGGTEEEEEESSCCGG-GCEEEEEEEECT
T ss_pred             cCcCCEEEEEEccCCHH-HCEEEEEEEecC
Confidence            34567899999999999 999999999875

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.43  E-value=1.4e-06  Score=45.96  Aligned_cols=40  Identities=15%  Similarity=0.131  Sum_probs=32.0

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..+..+|.|.+++.+ |+|.|+|.+.|.   .+.....+.|.|.
T Consensus        58 ~~~~~~L~i~~v~~~-D~G~Y~C~a~N~---~g~~~~~~~l~V~   97 (99)
T 1g1c_A           58 EDNVCELVIRDVTGE-DSASIMVKAINI---AGETSSHAFLLVQ   97 (99)
T ss_dssp             ETTEEEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             CCCEEEEEECCCCcC-CCEEEEEEEEEC---CCcEEEEEEEEEe
Confidence            345678999999999 999999999995   4555566677765

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.43  E-value=2e-07  Score=50.98  Aligned_cols=40  Identities=28%  Similarity=0.499  Sum_probs=30.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..++++|+|.+++.+ |+|.|.|.+....   ......+.|.|.
T Consensus        70 ~~~~~sL~I~~v~~~-DsG~Y~C~v~~~~---~~~~~~v~L~V~  109 (115)
T 2or7_A           70 SEGNVSLTIENTVVG-DGGPYCCVVEIPG---AFHFVDYMLEVK  109 (115)
T ss_dssp             GGTBCCEEESSCCGG-GCEEEEEEECCTT---SCEEEEEEEEEE
T ss_pred             cCCeEEEEEccCCHH-HCEEEEEEEECCC---ceeEEEEEEEEc
Confidence            456789999999999 9999999998742   223555666664

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.42  E-value=4.3e-07  Score=48.74  Aligned_cols=43  Identities=14%  Similarity=0.174  Sum_probs=28.9

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP   61 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p   61 (98)
                      ..+|.|.+++.+ |+|.|+|.+.+.   .+.....+.|.|..++..+
T Consensus        63 ~~~L~i~~v~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~~~  105 (108)
T 3kvq_A           63 NRNLTIRRVRKE-DEGLYTCQACSV---LGCAKVEAFFIIEGAQEKT  105 (108)
T ss_dssp             TTEEEECSCCGG-GCEEEEEEEC-------CEEEEEEEEEEC-----
T ss_pred             CcEEEEeecCcc-cCEEEEEEEEeC---CCceEEEEEEEEeCCCccc
Confidence            356999999999 999999999985   4555666788887666554

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.42  E-value=1.3e-07  Score=50.89  Aligned_cols=40  Identities=25%  Similarity=0.583  Sum_probs=29.0

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..+.++|+|.+++.+ |+|.|.|.+.+..   ......+.|.|.
T Consensus        68 ~~~~~sL~I~~v~~~-D~G~Y~C~v~~~~---~~~~~~~~l~V~  107 (109)
T 2oyp_A           68 NKGDVSLIIKNVTLD-DHGTYCCRIQFPG---LMNDKKLELKLD  107 (109)
T ss_dssp             GGTBCCEEECSCCGG-GCEEEEEEECCSS---TTCCEEEEEEEE
T ss_pred             cCCcEeEEEccCCCh-hCeEEEEEEEcCC---cccceEEEEEEE
Confidence            345678999999999 9999999998752   223334555553

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.41  E-value=1.7e-07  Score=49.73  Aligned_cols=34  Identities=15%  Similarity=0.375  Sum_probs=27.2

Q ss_pred             eeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           4 VEIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         4 ~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +.++.+....+..+|.|.++..+ |+|.|+|.|.+
T Consensus        49 ~~~~~i~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n   82 (91)
T 2lvc_A           49 SDFVVLENEGPHRRLVLPATQPS-DGGEFQCVAGD   82 (91)
T ss_dssp             CSSCEEEEETTEEEEEESSCCGG-GCSEEEEECSS
T ss_pred             eeeeeEEecCCeEEEEeCCCChh-hcEEEEEEEcc
Confidence            34455555567788999999999 99999999865

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.41  E-value=8.7e-07  Score=48.09  Aligned_cols=47  Identities=26%  Similarity=0.371  Sum_probs=33.8

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ   59 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~   59 (98)
                      .++.+....+...|.|.+++.+ |+|.|+|.+.     .  ....+.|.|..+|.
T Consensus        62 ~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~-----~--~~~~~~l~V~~~p~  108 (113)
T 2edh_A           62 DRHSLRQDGARCELQIRGLVAE-DAGEYLCMCG-----K--ERTSAMLTVRAMPS  108 (113)
T ss_dssp             SSEEEEEETTEEEEEECSCCST-TCEEEEEEET-----T--EEEEEEEEECCCCC
T ss_pred             CcEEEEECCCEEEEEECCCChh-hCEEEEEEeC-----C--CCEEEEEEEeCCCC
Confidence            4455554556778999999999 9999999992     2  33456777765554

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.41  E-value=5e-07  Score=48.61  Aligned_cols=39  Identities=15%  Similarity=0.169  Sum_probs=31.1

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ..|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|..+|
T Consensus        62 ~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~~~~~l~V~~~P  100 (103)
T 1wwb_X           62 GCLQLDNPTHM-NNGDYTLIAKNE---YGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEEEEESCCGG-GCEEEEEEEECS---SCEEEEEEEECCSCCC
T ss_pred             EEEEECCCCcc-cCEEEEEEEEeC---CCcEeEEEEEEECCCC
Confidence            45999999999 999999999995   4556666777776444

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens}

Probab=98.39  E-value=7.5e-07  Score=48.89  Aligned_cols=42  Identities=19%  Similarity=0.453  Sum_probs=32.0

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..++++|+|.|++.+ |+|.|.|.+..... .......+.|.|+
T Consensus        68 ~~~~~SL~I~nl~~~-DsG~Y~c~i~~~~~-~~~~~~~~~L~V~  109 (111)
T 2pkd_A           68 LGPNYNLVISDLRME-DAGDYKADINTQAD-PYTTTKRYNLQIY  109 (111)
T ss_dssp             CTTTCCEEECSCCGG-GCEEEEEEEEESST-TSEEEEEEEEEEE
T ss_pred             eCCCEEEEECCCCHH-HCEEEEEEEEeCCC-CceEEEEEEEEEE
Confidence            345678999999999 99999999987532 2234556777776

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.39  E-value=1.5e-08  Score=66.53  Aligned_cols=78  Identities=15%  Similarity=0.204  Sum_probs=47.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEE--EEECCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC-CeE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTV--TVLTPPQPPKISPGANPVATEGRAIELVCSTSGGSPD-PQI   92 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l--~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~   92 (98)
                      ..|+|.++..+ |+|.|+|.+.+..+.. .....+.+  .+..+|.. .+.+.. ....+|..+.|.|.+.+.+|+ +.+
T Consensus       295 ~~L~i~~~~~~-d~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~P~v-~~~~~~-~~~~~~~~~~L~C~~~g~~P~~~~v  370 (434)
T 1igy_B          295 SALPIMHQDWL-NGKEFKCRVNSAAFPA-PIEKTISKTKGKPRAPQV-YTIPPP-KEQMAKDKVSLTCMITDFFPEDITV  370 (434)
T ss_dssp             CCEECCHHHHH-HTCCCBCCBCCSSCSS-CCCCCCCCCCSCCBCCCC-EEECCC-SSSSSSSEEEEEEEEEEEBCSCEEE
T ss_pred             EEEEECHHHcc-CCCcEEEEEECCCCCC-ceeEEEeccCCCCcCCEE-EEECCC-HHHhcCCcEEEEEEEEeeECCCeEE
Confidence            35899999999 9999999999854321 11112222  12122222 223212 223457789999999754554 489


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       371 ~W~k~  375 (434)
T 1igy_B          371 EWQSD  375 (434)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99985

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=98.38  E-value=6.1e-07  Score=49.13  Aligned_cols=47  Identities=21%  Similarity=0.306  Sum_probs=32.4

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.... ........+.|.|..+|
T Consensus        67 ~~~~~~~sL~I~~v~~~-Dsg~Y~C~v~~~~-~~~~~~~~v~L~V~~~~  113 (116)
T 3bia_X           67 KVQFGEVSLTISNTNRG-DSGVYCCRIEVPG-WFNDVKKNVRLELRRAL  113 (116)
T ss_dssp             CGGGTBCCEEECSCCGG-GCEEEEEEEECSS-SSCCEEEEEEEEEECC-
T ss_pred             cCCCCEEEEEEccCChh-HCEEEEEEEEcCC-cccceEEEEEEEEecCC
Confidence            34567889999999999 9999999998631 11222445666665433

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.37  E-value=1.1e-06  Score=46.32  Aligned_cols=39  Identities=23%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ   59 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~   59 (98)
                      +|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..++.
T Consensus        52 ~L~i~~~~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~   90 (95)
T 4hwu_A           52 YLQIKGATPR-DSGLYACTAART---VDSETWIFMVNVTDAAE   90 (95)
T ss_dssp             EEEECSCCGG-GCEEEEEEEECS---SCEEEEEEEEEECCC--
T ss_pred             EEEECcCCcc-cCEEEEEEEccC---CCcEEEEEEEEEeCCcc
Confidence            6999999999 999999999985   34556667777765543

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.36  E-value=5.9e-07  Score=48.52  Aligned_cols=45  Identities=13%  Similarity=0.229  Sum_probs=33.1

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ++......+..+|.|.+++.. |+|.|+|.+.|.   .+..+..+.|.|
T Consensus        60 ~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V  104 (106)
T 1nct_A           60 RHQVTTTKYKSTFEISSVQAS-DEGNYSVVVENS---EGKQEAEFTLTI  104 (106)
T ss_dssp             SEEEEECSSEEEEEECCCCSS-CCSEEEECCBCS---SCBCCEEEEEEE
T ss_pred             CEEEEECCCEEEEEECcCCch-hCEEEEEEEEeC---CCeEEEEEEEEE
Confidence            444444555778999999999 999999999985   334455566665

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=8.1e-07  Score=47.40  Aligned_cols=48  Identities=15%  Similarity=0.145  Sum_probs=34.0

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP   61 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p   61 (98)
                      ++.+....+...|+|.+++.+ |+|.|+|.+       ......+.|.|...|.+|
T Consensus        53 ~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~-------g~~~~~~~l~V~~~p~~p  100 (103)
T 2dku_A           53 KHQPSQEGLTLRLTISALEKA-DSDTYTCDI-------GQAQSRAQLLVQGRRSGP  100 (103)
T ss_dssp             SEEEEEETTEEEEEEESCCTT-TCSEEEEEC-------SSCBCCEEEEEECSCCCC
T ss_pred             eEEEEeCCCEEEEEECCCCcc-cCEEEEEEe-------CCceEEEEEEEeCccCCC
Confidence            444444556778999999999 999999982       122335678887766554

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=6.2e-07  Score=50.42  Aligned_cols=49  Identities=22%  Similarity=0.279  Sum_probs=36.0

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCC--C-eeeEeeEEEEEECCCCCCEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSG--Q-DLHSQVYTVTVLTPPQPPKI   63 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~--~-~~~~~~~~l~v~~~~~~p~i   63 (98)
                      ..++|+|.+++.+ |+|.|.|.+.+....  . ........|.|..+|..|.|
T Consensus        77 ~~~~L~I~~v~~~-DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~s~P~i  128 (136)
T 2d9c_A           77 LDFSISISNITPA-DAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVV  128 (136)
T ss_dssp             CBCCEEESSCCTT-TCEEEEEEEEECCSSSCEEEEECCCEEEEEECCCCCCCC
T ss_pred             CEEEEEECCCCHH-HCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCCCCCcE
Confidence            4678999999999 999999999874210  0 11224578889887777766

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.35  E-value=1.7e-06  Score=45.32  Aligned_cols=38  Identities=18%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .+...|.|.++..+ |+|.|+|.+.|.   .+..+..+.|.|
T Consensus        55 ~~~~~L~i~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V   92 (93)
T 1wit_A           55 SSTTSIFFPSAKRA-DSGNYKLKVKNE---LGEDEAIFEVIV   92 (93)
T ss_dssp             TTEEEEECTTBCGG-GCEEEEEEEEET---TEEEEEEEEEEE
T ss_pred             CCEEEEEECCCChh-cCEEEEEEEEcC---CCeEEEEEEEEE
Confidence            44578999999999 999999999995   455555566655

>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens} SCOP: b.1.1.1

Probab=98.35  E-value=5.4e-08  Score=58.81  Aligned_cols=77  Identities=12%  Similarity=0.183  Sum_probs=25.6

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECC-CCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEEEEEEcCCCC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAG-SGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIELVCSTSGGS   87 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~-~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~   87 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+.. ...........|.|...  +..|.+.....    ....++|.|.+.+..
T Consensus        67 ~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~----~~~~vtL~C~~~gf~  141 (207)
T 1ymm_D           67 TSKKSSSLLITASRAA-DTASYFCATDTTSGTYKYIFGTGTRLKVLANIQNPDPAVYQLRD----SKSSDKSVCLFTDFD  141 (207)
T ss_dssp             GGGTBCCBCCSSCCST-TCSCCEEEEEETTSCSCEEECC-----------------------------------------
T ss_pred             CCCCEEEEEECcCCcc-cCceEEEEEEcCCCcceeeECCCEEEEEECCCCCCCCEEEecCC----CCCCeEEEEEccccc
Confidence            3456788999999999 9999999998731 00111112345666432  23344421111    123689999998778


Q ss_pred             CCCeE
Q psy5866          88 PDPQI   92 (98)
Q Consensus        88 p~~~~   92 (98)
                      |.+.+
T Consensus       142 P~p~v  146 (207)
T 1ymm_D          142 SQTNV  146 (207)
T ss_dssp             -----
T ss_pred             cCCcc
Confidence            87755

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.35  E-value=7.9e-07  Score=47.30  Aligned_cols=45  Identities=13%  Similarity=0.159  Sum_probs=32.1

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ++.+........|.|.+++.+ |+|.|+|.+.     .  ....+.|.|..+|
T Consensus        53 ~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~ag-----~--~~~~~~l~V~~~P   97 (100)
T 2yuv_A           53 KYIFEHKGCQRILFINNCQMT-DDSEYYVTAG-----D--EKCSTELFVRSGP   97 (100)
T ss_dssp             TEEEEEETTEEEEEEEEECTT-TCCEEEEEET-----T--EEEEEEEEECCSC
T ss_pred             CEEEEecCCEEEEEEcCCCcC-cCEEEEEEEC-----C--ceEEEEEEEecCC
Confidence            444444455678999999999 9999999991     2  2345677776554

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.35  E-value=5.4e-07  Score=48.83  Aligned_cols=38  Identities=26%  Similarity=0.256  Sum_probs=29.2

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      +.++|+|.+++.+ |+|.|.|.+.+..    .....+.|.|+.
T Consensus        71 ~~~sL~I~~v~~~-DsG~Y~C~v~~~~----~~~~~~~L~V~d  108 (110)
T 2ptt_A           71 NNGALHISNVRKE-DKGTYYMRVLRET----ENELKITLEVFD  108 (110)
T ss_dssp             TTCCEEESSCCGG-GCEEEEEEEESSS----BCCEEEEEEEEC
T ss_pred             CCccEEECCCCcc-cCeEEEEEEEcCC----CcEEEEEEEEEc
Confidence            5678999999999 9999999997642    233356777763

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.34  E-value=9.1e-06  Score=52.16  Aligned_cols=65  Identities=15%  Similarity=0.217  Sum_probs=45.7

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEc
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCST   83 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~   83 (98)
                      ..+...|.|.++... |+|.|+|.+.|.   .+.....+.+.+..+|.+|...   ......+..+.|.|..
T Consensus       154 ~~~~~~L~i~~~~~~-d~G~Y~C~a~N~---~G~~~~~~~l~v~~~P~~P~~~---~~~~~~~~~~~l~w~~  218 (389)
T 2jll_A          154 TGRKMILEIAPTSDN-DFGRYNCTATNH---IGTRFQEYILALADVPSSPYGV---KIIELSQTTAKVSFNK  218 (389)
T ss_dssp             CSSCEEEEECCCSTT-SSEEEEEEEEET---TEEEEEEEEEEECCCCCCCEEE---EEEEECSSCEEEEEEC
T ss_pred             cCCEEEEEECCCChh-hCEEEEEEEEcC---CCcEEEEEEEEecCCCCCCcce---EEeeccCCEEEEEEeC
Confidence            344568999999999 999999999995   4555566777776677666321   1122335678888874

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.34  E-value=5.9e-07  Score=48.89  Aligned_cols=42  Identities=24%  Similarity=0.426  Sum_probs=29.6

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..+.++|+|.+++.+ |+|.|.|.+.+... .......+.|.|.
T Consensus        69 ~~~~~sL~I~~v~~~-DsG~Y~C~v~~~~~-~~~~~~~~~l~V~  110 (116)
T 2or8_A           69 SEGDVSLTIENSVES-DSGLYCCRVEIPGW-FNDQKVTFSLQVK  110 (116)
T ss_dssp             GGTBCCEEESSCCGG-GCEEEEEEECCSST-TCCEEEEEEEEEE
T ss_pred             CCCeEEEEECCCCcc-cCEEEEEEEEcCCc-ccccEEEEEEEEC
Confidence            456788999999999 99999999987421 1112444555553

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.34  E-value=2.6e-06  Score=48.79  Aligned_cols=44  Identities=20%  Similarity=0.269  Sum_probs=34.3

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP   60 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~   60 (98)
                      .+...|.|.+++.. |+|.|+|.+.|.   .+.....+.|.|..+|..
T Consensus        95 ~~~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~~~p~~  138 (154)
T 1fhg_A           95 EGNCSLTISEVCGD-DDAKYTCKAVNS---LGEATCTAELLVETMGKE  138 (154)
T ss_dssp             TCEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECC---
T ss_pred             CCeEEEEECCCChh-cCEEEEEEEEEC---CCeEEEEEEEEEeCcCcC
Confidence            45678999999999 999999999995   455666778888766543

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=7.9e-07  Score=48.15  Aligned_cols=45  Identities=27%  Similarity=0.555  Sum_probs=33.5

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ   59 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~   59 (98)
                      +.+........|.|.+++.+ |+|.|+|.+.+       .+..+.|.|..+|.
T Consensus        59 ~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n-------~~~~~~l~V~~~p~  103 (113)
T 2cpc_A           59 LLLQKEDTVRRLVLPAVQLE-DSGEYLCEIDD-------ESASFTVTVTEPPV  103 (113)
T ss_dssp             BEEEECSSEEEEEESSCCTT-TCEEEEEESSS-------CEEEEEEEEECCCC
T ss_pred             EEEEECCCEEEEEECCCCcc-cCEEEEEEEec-------CcEEEEEEEecCCc
Confidence            33334445578999999999 99999999875       34567788876663

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.31  E-value=3.8e-06  Score=56.58  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=46.5

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC--CCCCEEeCCCCceecCCCcEE-EEEEcCCCCCCC-eE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP--PQPPKISPGANPVATEGRAIE-LVCSTSGGSPDP-QI   92 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~--~~~p~i~~~~~~~~~~g~~~~-l~C~~~~~~p~~-~~   92 (98)
                      .|.|..+..+ |.|.|+|.|.+......  ...+.. +...  +.+|.+.......  +|+.+. |.|.+.+.+|+. .+
T Consensus       362 ~L~i~~~~~~-d~g~y~C~a~n~~~~~~--~~~~~~-~~~~~~~~~p~v~~~~~~~--~~~~~~~L~C~~~g~~P~~i~v  435 (512)
T 1zvo_C          362 RLTLPRSLWN-AGTSVTCTLNHPSLPPQ--RLMALR-EPAAQAPVKLSLNLLASSD--PPEAASWLLCEVSGFSPPNILL  435 (512)
T ss_pred             EEEEchHHhc-CCCeEEEEEEeCCCCCC--ceeEEe-ecCCCCCCCCEEEEEccCc--CCCCceEEEEEEeeeCCCCcEE
Confidence            4889999999 99999999998643211  222211 1111  2334432111111  788899 999997656654 68


Q ss_pred             EEEec
Q psy5866          93 SVTLQ   97 (98)
Q Consensus        93 ~W~~~   97 (98)
                      .|+++
T Consensus       436 ~W~k~  440 (512)
T 1zvo_C          436 MWLED  440 (512)
T ss_pred             EEEEC
Confidence            99975

>1u9k_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immunity, immune system receptor, immune system; 1.76A {Mus musculus} SCOP: b.1.1.1

Probab=98.30  E-value=1.7e-06  Score=47.35  Aligned_cols=29  Identities=14%  Similarity=0.439  Sum_probs=25.7

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        70 ~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~   98 (114)
T 1u9k_A           70 DPSEAMLQVQMTDLQVT-DSGLYRCVIYHP   98 (114)
T ss_dssp             EGGGTEEEEEECSCCGG-GCEEEEEEEECT
T ss_pred             cCcCCEEEEEECCCChH-HCEEEEEEEecC
Confidence            45677899999999999 999999999874

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.30  E-value=1.5e-06  Score=48.85  Aligned_cols=42  Identities=12%  Similarity=0.116  Sum_probs=34.3

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP   60 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~   60 (98)
                      ...|.|.++... |+|.|+|.|.|.   .+.....+.|.|+..|..
T Consensus        62 ~~~L~i~~~~~~-D~G~YtC~A~N~---~G~~~~t~~l~v~~~P~~  103 (126)
T 1he7_A           62 HGCLRLNQPTHV-NNGNYTLLAANP---FGQASASIMAAFMDNPFE  103 (126)
T ss_dssp             EEEEEEESCCGG-GCEEEEEEEEET---TEEEEEEEEECCCSCTTS
T ss_pred             ceEEEECcCCCC-CCEEEEEEEEEC---CCeEEEEEEEEEEcCCCC
Confidence            467999999999 999999999996   566667777877766643

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.28  E-value=3.8e-06  Score=46.06  Aligned_cols=38  Identities=16%  Similarity=0.115  Sum_probs=29.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      .+|.|.+++.+ |+|.|+|++.+...  ...+..+.|.|..
T Consensus        72 gSL~I~nvt~~-D~G~Ytc~v~~~~~--~~~~~~~~L~V~~  109 (111)
T 2qsq_A           72 ASLLIQNIIQN-DAGFYTLHVIKSDL--VNEEATGQFRVYP  109 (111)
T ss_dssp             SCEEECSCCGG-GCEEEEEEEEETTS--CCEEEEEEEEEEC
T ss_pred             CcEEEccCccc-CCeEEEEEEEeCCC--cEEEEEEEEEEec
Confidence            37999999999 99999999998522  2356667777763

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.26  E-value=1.8e-06  Score=47.85  Aligned_cols=36  Identities=14%  Similarity=0.279  Sum_probs=27.3

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      +++|+|.+++.+ |+|.|+|.+.+..  ....+..+.|.
T Consensus        92 ~~sL~I~~v~~~-D~G~Y~C~v~~~~--~g~~~~~~~L~  127 (128)
T 3r0n_A           92 DATLALHGLTVE-DEGNYTCEFATFP--KGSVRGMTWLR  127 (128)
T ss_dssp             BCCEEECSCCGG-GCEEEEEEEEEET--TEEEEEEEEEE
T ss_pred             CeEEEEccCCch-hCeEEEEEEEeCC--CCCcccEEEEE
Confidence            678999999999 9999999987642  24444445554

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.25  E-value=9.1e-07  Score=50.66  Aligned_cols=48  Identities=17%  Similarity=0.134  Sum_probs=33.0

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP   57 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~   57 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+..   ........|.|..+
T Consensus        60 Rfs~~~~~~~~sL~I~~l~~~-DsG~Y~C~~~~~~---~~fg~gt~L~V~~~  107 (143)
T 3u6r_L           60 RFSGSGSGTDFTLTISNLEPE-DFAVYYCQQRSDW---VTFGGGTKVEIKAA  107 (143)
T ss_dssp             TEEEEEETTEEEEEECSCCGG-GCEEEEEEECSSB---CEECCCEEEEEC--
T ss_pred             cEeEEccCCEEEEEEccCccc-CCEEEEEEEecCC---CEECCCEEEEECCC
Confidence            444444567889999999999 9999999987632   22333356776543

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.25  E-value=4.1e-06  Score=45.74  Aligned_cols=41  Identities=17%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      +..+|.|.+++.. |+|.|+|.+.|.   .+.....+.|.|...|
T Consensus        63 ~~~~L~i~~~~~~-d~G~Y~C~a~N~---~G~~~~~~~l~v~~~P  103 (118)
T 1wwc_A           63 SEGCLLFNKPTHY-NNGNYTLIAKNP---LGTANQTINGHFLKEP  103 (118)
T ss_dssp             EEEEEEEESCCGG-GCEEEEEEEEET---TEEEEEEEEECCSCCC
T ss_pred             ccEEEEECCCChh-cCEEEEEEEECC---CCeEeeEEEEEEccCC
Confidence            3557999999999 999999999995   4566666777665444

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=98.25  E-value=1.1e-06  Score=49.40  Aligned_cols=46  Identities=9%  Similarity=0.182  Sum_probs=33.6

Q ss_pred             CCCeEEEEEcccee-eccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866          12 DSGRYDLIISNASF-ERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP   61 (98)
Q Consensus        12 ~~~~~~l~I~~v~~-~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p   61 (98)
                      ..|+.+|+|.+++. + |+|.|+|.+...   .......+.|.|...+..|
T Consensus        74 ~~GnaSL~i~~v~~~s-D~G~YtC~v~~~---~~~~~~~i~Lkv~~~~~~~  120 (127)
T 2jjs_C           74 LKGDASLKMDKSDAVS-HTGNYTCEVTEL---TREGETIIELKYRVVSWST  120 (127)
T ss_dssp             GGTBCCEEEEHHHHHT-SCEEEEEEEEET---TEEEEEEEEEEECCC----
T ss_pred             ccCcEEEEEccccccc-CCcEEEEEEEeC---CceEEEEEEEEEEeccccC
Confidence            35678999999998 8 999999999984   4445666778876555444

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=2.4e-06  Score=45.38  Aligned_cols=38  Identities=13%  Similarity=0.329  Sum_probs=29.5

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      .|.|.+++.. |+|.|+|.+.+.   .......+.|.|...+
T Consensus        55 ~L~i~~v~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~   92 (99)
T 2cr3_A           55 EVEVQDSVPA-DSGLYACVTSSP---SGSDTTYFSVNVSDAL   92 (99)
T ss_dssp             EEEETTCCTT-TCEEEEEEEEET---TEEEEEEEEECBCSCC
T ss_pred             EEEEccCCHH-HCEEEEEEEEeC---CceEEEEEEEEEecCC
Confidence            7999999999 999999999995   3455555666665443

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.24  E-value=9.1e-06  Score=45.77  Aligned_cols=47  Identities=15%  Similarity=0.170  Sum_probs=33.9

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCC-eeeEeeEEEEEECC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQ-DLHSQVYTVTVLTP   57 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~-~~~~~~~~l~v~~~   57 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+....... ........|.|...
T Consensus        77 ~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~~~~~~~~~~~gt~L~V~~~  124 (134)
T 3bik_B           77 LPNRHDFHMNILDTRRN-DSGIYLCGAISLHPKAKIEESPGAELVVTER  124 (134)
T ss_dssp             CTTSSEEEEEECSCCGG-GCEEEEEEEEECSSSCEEEECCCEEEEEECC
T ss_pred             cCCCCEEEEEECCCChH-HCEEEEEEEEeCCCCceEEEcCCEEEEEeCC
Confidence            45677899999999999 9999999998742211 12234567777643

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S*

Probab=98.24  E-value=2.9e-06  Score=46.66  Aligned_cols=43  Identities=16%  Similarity=0.359  Sum_probs=30.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEEC--CCCCeeeEeeEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAA--GSGQDLHSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~--~~~~~~~~~~~~l~v~   55 (98)
                      ..++++|+|++++.+ |+|.|.|.+...  .+........+.|.|.
T Consensus        74 ~~~~~sL~I~~v~~~-D~G~Y~C~v~~~~~~~~~~~~~~~~~L~V~  118 (119)
T 2pnd_A           74 VPGDVSLQINTLQMD-DRNHYTCEVTWQTPDGNQVIRDKIIELRVR  118 (119)
T ss_dssp             STTBCCEEESSCCGG-GCEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEccCCcc-cCEEEEEEEEECcCCCCeEEEEEEEEEEEc
Confidence            356789999999999 999999999762  1112344455566653

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.23  E-value=2.1e-06  Score=46.13  Aligned_cols=46  Identities=26%  Similarity=0.397  Sum_probs=33.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      .++.+......+.|.|.+++.+ |+|.|+|.+.+       ....+.|.|..+|
T Consensus        51 ~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n-------~~~~~~l~V~~~p   96 (108)
T 2dm7_A           51 GRYSLKQDGTRCELQIHDLSVA-DAGEYSCMCGQ-------ERTSATLTVRALP   96 (108)
T ss_dssp             SSCEEEEETTEEEEEESSCCTT-TCSEEEEEETT-------EEEEEECEEECCC
T ss_pred             CCEEEEecCCEEEEEECCCCcc-cCEEEEEEEcC-------CEEEEEEEEecCC
Confidence            3444444556778999999999 99999999943       2445677777544

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.22  E-value=3.1e-06  Score=45.71  Aligned_cols=25  Identities=20%  Similarity=0.535  Sum_probs=22.5

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      +++|+|.+++.+ |+|.|.|.+.+..
T Consensus        68 ~~sL~I~~v~~~-D~G~Y~C~v~~~~   92 (110)
T 1ncn_A           68 SWTLRLHNLQIK-DKGLYQCIIHHKK   92 (110)
T ss_dssp             TTEEEECSCCGG-GCEEEEEEEEEEC
T ss_pred             CEEEEEcCCChH-HCEEEEEEEEcCC
Confidence            478999999999 9999999998853

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.21  E-value=5.1e-06  Score=47.03  Aligned_cols=55  Identities=18%  Similarity=0.250  Sum_probs=35.6

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP   61 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p   61 (98)
                      ||........++|+|.+++.+ |+|.|.|.+.+.............|.|...|...
T Consensus        70 rf~~~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~~~~~~~fg~GT~L~V~~~p~~~  124 (134)
T 3kg5_A           70 RMEESQNESLATLTIQGIRFE-DNGIYFCQQKCNNTSEVYQGCGTELRVMGFSTLA  124 (134)
T ss_dssp             TEEEEECSSEEEEEECSCCTT-TCEEEEEEEECTTTCCEEECCCEEEEEECC----
T ss_pred             eEEEEccCCEEEEEECCCCcC-cCEEEEEEEEcCCCCceEECCCEEEEEecCCCHH
Confidence            444444667899999999999 9999999998742112233334567776555443

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.21  E-value=3.2e-06  Score=44.60  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=27.3

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      +|.|.+++.+ |+|.|+|.+.|.   ....+..+.|.|
T Consensus        63 ~L~i~~v~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V   96 (98)
T 1gl4_B           63 ILTIRNVQPS-DAGTYVCTGSNM---FAMDQGTATLHV   96 (98)
T ss_dssp             EEEECSCCGG-GCEEEEEEEECS---SCEEEEEEEEEE
T ss_pred             EEEEeCCChh-hCEEEEEEecCC---CCccccEEEEEE
Confidence            6999999999 999999999985   344555566665

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=7.2e-07  Score=47.55  Aligned_cols=44  Identities=20%  Similarity=0.244  Sum_probs=31.6

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP   57 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~   57 (98)
                      ++.+....+...|.|.++..+ |+|.|+|.+.+       ....+.|.|..+
T Consensus        57 ~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~n-------~~~~~~l~V~~~  100 (101)
T 2edk_A           57 RYRFKKDGKRHILIFSDVVQE-DRGRYQVITNG-------GQCEAELIVEEK  100 (101)
T ss_dssp             CCEEEECSSEEEEECSSCCGG-GCSBEEEECSS-------CEECCBEEEECC
T ss_pred             eEEEEECCCEEEEEECCCChh-hCEEEEEEEcC-------CcEEEEEEEeCC
Confidence            444555566778999999999 99999998875       123445666544

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.20  E-value=6.9e-07  Score=48.02  Aligned_cols=44  Identities=18%  Similarity=0.130  Sum_probs=31.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ++.+....+...|.|.+++.+ |+|.|+|.+.+.     ..+..+.|.|.
T Consensus        53 ~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~-----~~~~~~~l~V~   96 (106)
T 2dlt_A           53 RITISHVGRFHKLVIDDVRPE-DEGDYTFVPDGY-----ALSLSAKLNFL   96 (106)
T ss_dssp             SCEEEEETTEEEEEESSCCTT-TCSCEEEEEETS-----CCCCCBCEEEE
T ss_pred             CEEEEEeCCEEEEEECCCCcC-CCEEEEEEEccC-----CceEEEEEEEE
Confidence            333444455678999999999 999999999873     23334556654

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.20  E-value=4.6e-06  Score=44.04  Aligned_cols=35  Identities=20%  Similarity=0.484  Sum_probs=28.2

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .+|.|.+++.. |+|.|+|.+.|.   .+.....+.|.|
T Consensus        65 ~~L~i~~v~~~-D~G~Y~C~a~N~---~g~~~~~~~l~V   99 (100)
T 3caf_A           65 WSLIMESVVPS-DKGNYTCVVENE---YGSINHTYHLDV   99 (100)
T ss_dssp             TEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEE
T ss_pred             EEEEEccCCcC-CCEEEEEEEEeC---CCEEEEEEEEEE
Confidence            47999999999 999999999995   455555566665

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=1.6e-06  Score=45.93  Aligned_cols=37  Identities=22%  Similarity=0.317  Sum_probs=29.4

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP   57 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~   57 (98)
                      +|.|.+++.+ |+|.|+|.+.|.   ....+..+.|.|..+
T Consensus        63 ~L~i~~v~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           63 TLQIKNLRIS-DTGTYTCVATSS---SGETSWSAVLDVTES   99 (100)
T ss_dssp             CEEEESCCTT-TCCEEEEEEECS---SCCCBCCEEEEEESC
T ss_pred             EEEEccCCcc-cCEEEEEEEEcC---CCCEEEEEEEEEecC
Confidence            6999999999 999999999986   334455677777643

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.19  E-value=6.4e-06  Score=48.59  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=32.9

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      .+...|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|..
T Consensus       171 ~~~~~L~i~~~~~~-d~G~Y~C~a~N~---~g~~~~~~~l~V~~  210 (212)
T 2r15_A          171 GRTAYFTINGVSTA-DSGKYGLVVKNK---YGSETSDFTVSVFI  210 (212)
T ss_dssp             TTEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEC
T ss_pred             CCEEEEEEcCcchH-HCeEEEEEEEcC---CCcEEEEEEEEEEc
Confidence            45678999999999 999999999995   45666677787764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.18  E-value=4.9e-06  Score=49.68  Aligned_cols=40  Identities=20%  Similarity=0.260  Sum_probs=31.8

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ..+|+|.+++.+ |+|.|+|.+.+.   .+..+..+.|.|..+|
T Consensus       170 ~~~L~I~~v~~~-D~G~Y~C~a~N~---~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          170 LSTLTIDGVTRS-DQGLYTCAASSG---LMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             EEEEEESSCCGG-GCEEEEEEEECS---SCEEEEEEEEEEEC--
T ss_pred             eEEEEECCCCcc-cCEEEEEEEecC---CCcEEEEEEEEEeccc
Confidence            456999999999 999999999985   4556777888887544

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.17  E-value=3.3e-06  Score=51.72  Aligned_cols=42  Identities=10%  Similarity=0.202  Sum_probs=32.9

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      .+..+|.|.+++.+ |+|.|+|.+.+.   .......+.|.|...+
T Consensus       198 ~~~~~L~i~~v~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~  239 (268)
T 3mj6_A          198 RNDGSIKLQTVKES-DQGIYTCSIYVG---KLESRKTIVLHVVQDE  239 (268)
T ss_dssp             GTBCCEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECC-
T ss_pred             CCeEEEEECcCChh-hCeEEEEEEEcC---CceEEEEEEEEEEcCC
Confidence            34568999999999 999999999984   5566677788885443

>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A

Probab=98.17  E-value=1.2e-05  Score=44.09  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=31.8

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCC-eeeEeeEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQ-DLHSQVYTVTVL   55 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~-~~~~~~~~l~v~   55 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+....... ........|.|.
T Consensus        67 ~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~~~~~~~~~~~~t~L~V~  112 (117)
T 3bp6_A           67 LPNRHDFHMNILDTRRN-DSGIYLCGAISLHPKLKIEESPGAELVVT  112 (117)
T ss_dssp             CTTSSEEEEEESSCCGG-GCEEEEEEEEECSSSCEEEECCCEEEEEC
T ss_pred             cCCCCEEEEEECcCCHH-HCEEEEEEEEecCCccccccCCcEEEEEE
Confidence            45778899999999999 9999999998742211 122334555553

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.17  E-value=2.8e-06  Score=45.81  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=27.1

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        61 r~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~n~   93 (108)
T 1jhl_L           61 RFSGSGSGTDFTLTISSLEPE-DFAMYICQQHNE   93 (108)
T ss_dssp             TEEEEESSSEEEEEECSCCTT-CCSEEEEEECSS
T ss_pred             eEEEEecCCEEEEEECCCCHH-HCEEEEEEEccC
Confidence            444444566789999999999 999999999874

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.16  E-value=6.4e-06  Score=43.32  Aligned_cols=35  Identities=14%  Similarity=0.358  Sum_probs=27.6

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..|.|.+++.+ |+|.|+|.+.+.   .+..+..+.|.|
T Consensus        60 ~~L~i~~~~~~-D~G~Y~C~a~n~---~g~~~~~~~l~V   94 (95)
T 2ckn_A           60 EEVEVRDSIPA-DSGLYACVTSSP---SGSDTTYFSVNV   94 (95)
T ss_dssp             SEEEESSCCGG-GSEEEEEEEEET---TEEEEEEEEEEE
T ss_pred             CEEEECCCChH-HCEEEEEEeccC---CCcEEEEEEEEE
Confidence            36999999999 999999999985   445555555554

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.16  E-value=1.5e-06  Score=48.99  Aligned_cols=52  Identities=27%  Similarity=0.333  Sum_probs=32.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCC-CeeeEeeEEEEEECCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSG-QDLHSQVYTVTVLTPP   58 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~-~~~~~~~~~l~v~~~~   58 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+..+. .........|.|...|
T Consensus        67 r~~~~~~~~~~~L~I~~~~~~-DsG~Y~C~a~n~~g~~~~~~g~gt~L~V~~~p  119 (133)
T 3khq_A           67 RIVQTQNGSVYTLTIQNIQYE-DNGIYFCKQKCDSANHNVTDSCGTELLVLGFS  119 (133)
T ss_dssp             TEEEEEETTEEEEEECSCCGG-GCEEEEEEESSCC-------CCCEEEEEC---
T ss_pred             CEEEEcCCCEEEEEECCCChH-HCEEEEEEEEeCCCCcceeECCCEEEEEEecc
Confidence            444444456789999999999 999999999874210 1123344677776433

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.16  E-value=2.3e-06  Score=45.56  Aligned_cols=48  Identities=21%  Similarity=0.448  Sum_probs=33.9

Q ss_pred             eeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC
Q psy5866           4 VEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ   59 (98)
Q Consensus         4 ~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~   59 (98)
                      +.++.+.......+|.|.+++.+ |+|.|+|.+.     .  ....+.|.|..+|.
T Consensus        51 ~~~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~g-----~--~~~~~~l~V~~~p~   98 (103)
T 2e7b_A           51 GDKYSLRQEGAMLELVVRNLRPQ-DSGRYSCSFG-----D--QTTSATLTVTALPS   98 (103)
T ss_dssp             SSSEEEEECSSEEEEEECSCCTT-TCCCEEEECS-----S--CBCCBCEEEECCCC
T ss_pred             CCcEEEEEcCCEEEEEEccCCcc-cCEEEEEEEC-----C--cEEEEEEEEEeccc
Confidence            34555556667788999999999 9999999822     1  23345677765554

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.15  E-value=4e-06  Score=46.15  Aligned_cols=48  Identities=21%  Similarity=0.160  Sum_probs=33.0

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+..  .........|.|..
T Consensus        63 R~~~~~~~~~~~L~I~~~~~~-DsG~Y~C~~~~~~--~~~fg~gt~L~V~~  110 (120)
T 1oaq_L           63 RFSGSLIGNKAALTITGAQTE-DEAIYFCALWYSN--HLVFGGGTKLTVLG  110 (120)
T ss_dssp             TEEEEEETTEEEEEEESCCGG-GCEEEEEEEEETT--EEEECCCEEEEECC
T ss_pred             ceEEecCCCeEEEEECCCChh-hCeEEEEEEccCC--CcEECCCEEEEEcC
Confidence            444444566889999999999 9999999998741  12222334666653

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A*

Probab=98.14  E-value=1.7e-06  Score=47.47  Aligned_cols=33  Identities=18%  Similarity=0.353  Sum_probs=26.5

Q ss_pred             EEEEe--CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYR--PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~--~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+.+.  ...++++|+|.+++.+ |+|.|.|.+...
T Consensus        67 R~~~~~~~~~~~~sL~I~~v~~~-Dsg~Y~C~v~~~  101 (119)
T 1qfo_A           67 RAELMGNMDHKVCNLLLKDLKPE-DSGTYNFRFEIS  101 (119)
T ss_dssp             TEEECSCGGGTBCCEEECSCCGG-GCEEEEEEEECC
T ss_pred             eEEEeCCCCCCEEEEEEccCCcc-cCceEEEEEEeC
Confidence            45443  3367789999999999 999999999863

>1mqk_H Antibody 7E2 FV fragment, heavy chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_C 3ehb_C* 3hb3_C* 1qle_H* 2otu_B 2gsg_B 2otw_B 1qfw_I* 3ab0_B 1i8k_B 1i8i_B 1vhp_A 1bfv_H* 1cfv_H* 2bfv_H* 1dsf_H

Probab=98.14  E-value=9.3e-06  Score=45.19  Aligned_cols=28  Identities=18%  Similarity=0.194  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+...
T Consensus        74 ~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~  101 (127)
T 1mqk_H           74 NAKNTLYLQMSSLKSE-DTAMYYCVRHEY  101 (127)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEEEET
T ss_pred             CCCCEEEEEECCCCHH-HCEEEEEEEecC
Confidence            3467899999999999 999999999873

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.14  E-value=9.2e-06  Score=47.19  Aligned_cols=42  Identities=19%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP   60 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~   60 (98)
                      ...|.|.+++.+ |+|.|+|.+.+.   ....+..+.|.|...|..
T Consensus       142 ~~~L~i~~v~~~-d~G~Y~C~a~n~---~~~~~~~~~l~V~~~p~~  183 (184)
T 2ny1_B          142 GKTLSVSQLELQ-DSGTWTCTVLQN---QKKVEFKIDIVVLAFQKA  183 (184)
T ss_dssp             SSEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECCCC-
T ss_pred             ceEEEEecCCcC-CCeEEEEEEEEC---CceEEEEEEEEEEecCCC
Confidence            346999999999 999999999984   566677788888766653

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.14  E-value=6.3e-06  Score=44.57  Aligned_cols=33  Identities=24%  Similarity=0.250  Sum_probs=27.6

Q ss_pred             EEEEe--CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYR--PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~--~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+.+.  ...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        60 R~~~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~   94 (109)
T 1pew_A           60 RFAGSIDRSSNSASLTISGLKTE-DEADYYCQSYDA   94 (109)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEET
T ss_pred             cEEEEeccCCCEEEEEECCCChh-hCEEEEEEEEeC
Confidence            44443  6777899999999999 999999999873

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.13  E-value=3.1e-06  Score=44.67  Aligned_cols=38  Identities=34%  Similarity=0.359  Sum_probs=28.5

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .+...|.|.++..+ |+|.|+|.+.|.   .+..+..+.|.|
T Consensus        61 ~~~~~L~i~~v~~~-D~G~Y~C~a~N~---~g~~~~~~~l~V   98 (99)
T 2yr3_A           61 AGVAELHIQDALPE-DHGTYTCLAENA---LGQVSCSAWVTV   98 (99)
T ss_dssp             TTEEEEEECSCCTT-CCBCEEEEEECS---SCEEEEECCEEE
T ss_pred             CCeEEEEECCCChh-hCEEEEEEEEEC---CCeEEEEEEEEE
Confidence            34568999999999 999999999985   334444445544

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.13  E-value=7.3e-06  Score=44.46  Aligned_cols=34  Identities=18%  Similarity=0.344  Sum_probs=28.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .|+......+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        65 ~R~~~~~~~~~~~L~I~~~~~~-DsG~Y~C~~~~~   98 (111)
T 2qhl_A           65 SRFSMTVNDQKFDLNIIGTRED-DGGEYFCGEVEG   98 (111)
T ss_dssp             TTEEEEESSSBEEEEESSCCGG-GCEEEEEEEEET
T ss_pred             CcEEEEEcCCeEEEEECCCChh-HCEEEEEEEccC
Confidence            3555555567889999999999 999999999873

>1jtp_A Single-domain antibody; immunoglobulin, heavy chain antibody, VHH, interface, binding, antibody, hydrolase; 1.90A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1jto_A 1mel_A 2x89_A

Probab=98.12  E-value=1.6e-05  Score=45.52  Aligned_cols=27  Identities=15%  Similarity=0.278  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        74 ~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~  100 (148)
T 1jtp_A           74 NAKNTVYLLMNSLEPE-DTAIYYCAADS  100 (148)
T ss_dssp             CTTSEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             CCCCEEEEEECcCChh-HCEEEEEEEEc
Confidence            4577899999999999 99999999986

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.12  E-value=3.3e-06  Score=44.46  Aligned_cols=29  Identities=14%  Similarity=0.242  Sum_probs=23.4

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRL   36 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~   36 (98)
                      +.+....+..+|.|.+++.+ |+|.|+|.+
T Consensus        54 ~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a   82 (95)
T 2k1m_A           54 YGLATEGTRHTLTVREVGPA-DQGSYAVIA   82 (95)
T ss_dssp             CEEEEETTEEEEEESSCCTT-CCSEEEEEE
T ss_pred             EEEEEcCCEEEEEEcCCCcc-cCEEEEEEE
Confidence            33334455678999999999 999999999

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=4.4e-06  Score=44.39  Aligned_cols=45  Identities=11%  Similarity=0.251  Sum_probs=31.5

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ++.+........|.|.+++.+ |+|.|+|.+.+       ....+.|.|..++
T Consensus        56 ~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~~-------~~~~~~l~V~~p~  100 (102)
T 2eo1_A           56 KVRVEAVGCTRRLVVQQAGQA-EAGEYSCEAGG-------QQLSFRLQVAGQC  100 (102)
T ss_dssp             SEEEEEETTEEEEEETTCCTT-TCSCEEEEETT-------EECCEEEEEESCC
T ss_pred             CEEEEEcCCEEEEEECCCCcc-cCEEEEEEcCC-------CcEEEEEEEeCCC
Confidence            333444445678999999999 99999998853       1234677776543

>1mfa_H IGG1-lambda Se155-4 FAB (heavy chain); immunoglobulin; HET: GLA MMA; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy2_B

Probab=98.12  E-value=1e-05  Score=44.45  Aligned_cols=29  Identities=14%  Similarity=0.179  Sum_probs=25.5

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        73 ~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~  101 (120)
T 1mfa_H           73 VTSTTTAYMELSSLTSE-DSAVYYCTRGGH  101 (120)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEEET
T ss_pred             eCCCCEEEEEECCCCHH-HCEEEEEEEecC
Confidence            35577899999999999 999999999873

>1smo_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immune system receptor, system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1

Probab=98.11  E-value=7.9e-06  Score=45.22  Aligned_cols=29  Identities=24%  Similarity=0.464  Sum_probs=25.6

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+...
T Consensus        70 ~~~~~~~~LtI~~l~~~-Dsg~Y~C~~~~~   98 (119)
T 1smo_A           70 YHDHGLLRVRMVNLQVE-DSGLYQCVIYQP   98 (119)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEECCT
T ss_pred             eCCCCEEEEEECCCCHH-HCEEEEEEEEcC
Confidence            45678999999999999 999999998763

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.11  E-value=9.8e-06  Score=48.26  Aligned_cols=44  Identities=25%  Similarity=0.304  Sum_probs=33.8

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPK   62 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~   62 (98)
                      ...|.|.+++.. |+|.|+|.+.+.   ....+..+.|.|..+|.+|.
T Consensus       184 ~~~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~~~p~~p~  227 (231)
T 3ojm_B          184 AEVLALFNVTEA-DAGEYICKVSNY---IGQANQSAWLTVLPKQQAPG  227 (231)
T ss_dssp             TTEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECCC----
T ss_pred             ccEEEEecCCHH-HCeEEEEEEEec---cceEeeEEEEEEecCCCCCc
Confidence            346999999999 999999999995   45667778888887776653

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.11  E-value=6.2e-06  Score=45.85  Aligned_cols=41  Identities=15%  Similarity=0.279  Sum_probs=29.3

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCC--eeeEeeEEEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQ--DLHSQVYTVTVL   55 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~--~~~~~~~~l~v~   55 (98)
                      +.++|+|.+++.+ |+|.|.|.+.+.....  ......+.|.|.
T Consensus        90 ~~~sL~I~~v~~~-D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~  132 (135)
T 1xt5_A           90 AAPTLRLTHVHPQ-DGGRYWCQVAQWSIRTEFGLDAKSVVLKVT  132 (135)
T ss_dssp             TSCCEEECSCCGG-GCEEEEEEEECSSCCSGGGEEEEEEEEEEE
T ss_pred             CCCeEEECCCChh-hCcEEEEEEEcCCccccccccceeEEEEEe
Confidence            4578999999999 9999999999853211  233345566654

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.10  E-value=4.2e-06  Score=51.44  Aligned_cols=69  Identities=9%  Similarity=0.140  Sum_probs=32.8

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCS   82 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~   82 (98)
                      .....|.|.+++.+ |+|.|+|.+.+........+..+.|.|..++..|.+..........+..+.|...
T Consensus       149 ~~~~~l~I~~v~~~-d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P~l~~~~~~~~~~~~~~~~~~~  217 (242)
T 1p6f_A          149 KVQAEFPLGPVTTA-HRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENTSLAPEDPTFPADTWGTYLLTT  217 (242)
T ss_dssp             SSEEEEEEEECCGG-GCEEEEEEEEEETTEECCCCCCEEEEEEC--------------------------
T ss_pred             CceEEEEeCCCccc-cCEEEEEEEECCCCcccCCCCCEEEEEeccCCCCcccCcCCCccccccccccccc
Confidence            45678999999999 9999999998853111234566888888777777774433323333444444443

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.09  E-value=3.5e-06  Score=46.53  Aligned_cols=48  Identities=13%  Similarity=0.112  Sum_probs=32.4

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+... .........|.|.
T Consensus        61 R~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~~~-~~~fg~gt~L~V~  108 (120)
T 1mqk_L           61 RFSGSGSGTQFSLKINSLLPE-DFGSYYCQHHYGTP-PLTFGGGTKLEIK  108 (120)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSSS-SCCBCCCEEEEEC
T ss_pred             eEEEeccCCEEEEEECCCCHH-HCEEEEEEEEeCCC-ceEECCCeEEEEe
Confidence            444444556789999999999 99999999987420 1122233466664

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.09  E-value=6.7e-06  Score=49.48  Aligned_cols=44  Identities=20%  Similarity=0.359  Sum_probs=30.8

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPP   61 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p   61 (98)
                      +...|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|..+|..+
T Consensus       180 ~~~~L~i~~~~~~-d~G~Y~C~a~N~---~g~~~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          180 ADVRLRLANVSER-DGGEYLCRATNF---IGVAEKAFWLSVHGPRAAE  223 (241)
T ss_dssp             EEEEEEECSCCGG-GCEEEEEEEECS---SCEEEEEEEEEC-------
T ss_pred             CceEEEECcCCcc-cCcEEEEEEecC---cceEEEEEEEEecCCCCCC
Confidence            4567999999999 999999999985   4555667788887666554

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.08  E-value=1.2e-05  Score=44.21  Aligned_cols=29  Identities=28%  Similarity=0.644  Sum_probs=25.7

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+...
T Consensus        69 ~~~~~~~sL~I~~l~~~-DsG~Y~C~v~~~   97 (117)
T 1xed_A           69 FPENGTFVVNIAQLSQD-DSGRYKCGLGIN   97 (117)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEESCG
T ss_pred             cCCCCEEEEEECCCChH-HCEEEEEEEEeC
Confidence            46778899999999999 999999998763

>1dlf_H Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 2dlf_H 1wz1_H* 3iy5_B 2uud_H*

Probab=98.08  E-value=1.4e-05  Score=44.19  Aligned_cols=29  Identities=21%  Similarity=0.206  Sum_probs=25.2

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+...
T Consensus        75 ~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~  103 (124)
T 1dlf_H           75 DDSKRRVYLQMNTLRAE-DTGIYYCTGIYY  103 (124)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEEBT
T ss_pred             cCCCCEEEEEECCCCHH-HCEEEEEEEEeC
Confidence            34577899999999999 999999999863

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=1.7e-05  Score=43.57  Aligned_cols=47  Identities=11%  Similarity=0.051  Sum_probs=35.1

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ   59 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~   59 (98)
                      ++.+.......+|+|.++..+ |+|.|+|....    .  ...++.|.|..+|.
T Consensus        62 r~~i~~~g~~~~L~I~~v~~~-D~G~Y~~~~~~----~--~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           62 RYRIEQKGLQHRLILHAVKHQ-DSGALVGFSCP----G--VQDSAALTIQESSG  108 (112)
T ss_dssp             EEEECCBTTEEEEEEESCCST-TCSEEEEEEET----T--EEEEEEEEEECSSC
T ss_pred             EEEEEeCCcEEEEEECCCCHH-HCccEEEEEEC----C--eeEEEEEEEeCCCc
Confidence            666666666789999999999 99999875543    1  23467888886654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.07  E-value=1.2e-05  Score=46.85  Aligned_cols=43  Identities=19%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             EEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           8 DYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         8 ~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ......+..+|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|
T Consensus       151 ~~~~~~~~~~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V  193 (194)
T 2a38_A          151 QISQEGDLYSLLIAEAYPE-DSGTYSVNATNS---VGRATSTAELLV  193 (194)
T ss_dssp             EEEEETTEEEEEEEEECGG-GCEEEEEEEEET---TEEEEEEEEEEE
T ss_pred             EEEEcCCEEEEEECCCChh-cCeEEEEEEEeC---CCceEEEEEEEE
Confidence            3333345568999999999 999999999995   455555566655

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.07  E-value=1.8e-06  Score=54.76  Aligned_cols=78  Identities=21%  Similarity=0.310  Sum_probs=23.7

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCC--CC---eeeEeeEEEEEECCCCC-CEEeCCCCceecCCCcEEEEEEcCCCCCC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGS--GQ---DLHSQVYTVTVLTPPQP-PKISPGANPVATEGRAIELVCSTSGGSPD   89 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~--~~---~~~~~~~~l~v~~~~~~-p~i~~~~~~~~~~g~~~~l~C~~~~~~p~   89 (98)
                      ..+.+...+.+ |.+.|.|+|.+...  +.   ...+....|.|+.+|.. +.+.. + ..+.+|+.++|+|.+.+..|+
T Consensus       142 ~~l~~~~~~~D-~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~-p-~~l~eG~~v~l~C~~~g~~P~  218 (291)
T 1mq8_A          142 VTTTVLVRRDH-HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS-P-RVLEVDTQGTVVCSLDGLFPV  218 (291)
T ss_dssp             EEEECCCSSSC-SSCEEEEEEEEECGGGTSCEEEECCCCEECBC------------------------------------
T ss_pred             EEEEeeeeecc-CCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecC-C-cCccCCCeEEEEEEcCCCCCC
Confidence            34556555555 66799999998522  11   12345567888777543 44432 2 367899999999998744454


Q ss_pred             C--eEEEEe
Q psy5866          90 P--QISVTL   96 (98)
Q Consensus        90 ~--~~~W~~   96 (98)
                      +  .++|++
T Consensus       219 ~~~~v~w~~  227 (291)
T 1mq8_A          219 SEAQVHLAL  227 (291)
T ss_dssp             ---------
T ss_pred             cccEEEEEE
Confidence            3  588875

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.07  E-value=9.3e-06  Score=44.09  Aligned_cols=28  Identities=29%  Similarity=0.557  Sum_probs=25.1

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        60 ~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~   87 (111)
T 2ywz_A           60 DKGSKSFSLRISDLRVE-DSGTYKCQADY   87 (111)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             eCCCCEEEEEECCCChh-cCEEEEEEEEc
Confidence            44567899999999999 99999999987

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.06  E-value=1.2e-05  Score=44.66  Aligned_cols=33  Identities=18%  Similarity=0.139  Sum_probs=27.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ||......+.++|+|.+++.+ |+|.|.|.+...
T Consensus        62 Rfs~~~~~~~~sL~I~~l~~~-DsG~Y~C~~~~~   94 (123)
T 3t0v_A           62 RFSGSKSGTSASLAISGLRSE-DEADYYCLSWDD   94 (123)
T ss_dssp             TEEEEEETTEEEEEECSCCGG-GCEEEEEEEEET
T ss_pred             CEEEEccCCEEEEEECCCCHH-HCEEEEEEEEcC
Confidence            444444567899999999999 999999999874

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.06  E-value=1e-05  Score=43.08  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=27.8

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCee-eEeeEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDL-HSQVYTVTV   54 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~-~~~~~~l~v   54 (98)
                      ..+|.|.+++.. |+|.|+|.+.+.   .+. .+..+.|.|
T Consensus        75 ~~~L~I~~v~~~-D~G~Y~C~a~n~---~g~~~s~~~~l~V  111 (112)
T 3so5_A           75 TTILRLRNVEFT-SEGXYQCVISNH---FGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEEECSCCGG-GCEEEEEEEEET---TEEEECCCEEEEE
T ss_pred             ceEEEEeccccc-cCCeEEEEEEeC---CCcEEEeEEEEEe
Confidence            468999999999 999999999985   333 345556655

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.05  E-value=5.3e-06  Score=44.87  Aligned_cols=33  Identities=15%  Similarity=0.192  Sum_probs=26.6

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        63 R~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~   95 (109)
T 2q20_A           63 RFSGSGSGTDFTFTISSLQPE-DIATYYCQQYDN   95 (109)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSS
T ss_pred             cEEEeccCCEEEEEECCCChh-hCEEEEEEEeeC
Confidence            444444556789999999999 999999999763

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.05  E-value=2.4e-06  Score=47.71  Aligned_cols=28  Identities=29%  Similarity=0.306  Sum_probs=25.2

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        74 ~~~~~~sL~I~~~~~~-DsG~Y~C~~~~~  101 (126)
T 2h32_A           74 VARNRGYLSISELQPE-DEAMYYCAMGAR  101 (126)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEEECS
T ss_pred             CCCCeEEEEECCCChh-HCEEEEEEEEcC
Confidence            5677899999999999 999999999874

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.05  E-value=5.9e-06  Score=45.92  Aligned_cols=47  Identities=9%  Similarity=0.139  Sum_probs=33.1

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+..  .........|.|.
T Consensus        65 r~~~~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~--~~~fg~gT~L~V~  111 (126)
T 4ffy_L           65 RFSGSGSETDFTLTIDSVETD-DAATYYCQQNNED--PYTFGGGTKLEIK  111 (126)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSS--SCEECCCEEEEEE
T ss_pred             cEEEecCCCEEEEEECCCCHH-HCEEEEEEEecCC--CcEECCCEEEEEe
Confidence            444444567889999999999 9999999998642  1223334566665

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.05  E-value=5.1e-06  Score=49.60  Aligned_cols=45  Identities=22%  Similarity=0.406  Sum_probs=31.1

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI   63 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i   63 (98)
                      ..|.|.+++.+ |+|.|+|.+.+..  ....+..+.|.|..++..|.+
T Consensus       137 ~~L~i~~v~~~-D~G~Y~C~a~n~~--~~~~s~~~~l~V~~~~~~P~i  181 (204)
T 3sgj_C          137 SDFYIPKATLK-DSGSYFCRGLVGS--KNVSSETVQITITQGLAVSTI  181 (204)
T ss_dssp             CCEEESSCCGG-GCEEEEEEEEETT--EEEECCCEEEEEEC-------
T ss_pred             ceEEECcCCcc-cCEEEEEEEEeCC--CceecCcEEEEEeCcCCCCcc
Confidence            36999999999 9999999999941  345666788888877766655

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.04  E-value=1.1e-05  Score=43.54  Aligned_cols=28  Identities=25%  Similarity=0.484  Sum_probs=24.9

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        60 ~~~~~~~~L~I~~~~~~-DsG~Y~C~~~~   87 (108)
T 2coq_A           60 DEGSNSASLTIRDLRVE-DSGTYKCKAYR   87 (108)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCcc-cCEEEEEEEEe
Confidence            44567899999999999 99999999987

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.04  E-value=2.6e-06  Score=46.01  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=27.1

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+.+....+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        61 r~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~   93 (108)
T 1qfw_M           61 RFTGSGSATDFTLTISSVQAE-DFADYHCGQTYN   93 (108)
T ss_dssp             TEECCBCSSEEEEEESSCCTT-CCSEEEEEECSS
T ss_pred             cEEEEcCCCEEEEEECCCChh-hCEEEEEEEccC
Confidence            455444566889999999999 999999999863

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=98.03  E-value=1.1e-05  Score=44.06  Aligned_cols=28  Identities=14%  Similarity=0.226  Sum_probs=25.0

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        73 ~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~  100 (117)
T 2yc1_A           73 DDAKKTLSLQMNSLRAE-DTAVYYCARGG  100 (117)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             eCCCCEEEEEECCCCHH-HCEEEEEEEEe
Confidence            34577899999999999 99999999987

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.03  E-value=6.7e-06  Score=44.88  Aligned_cols=27  Identities=22%  Similarity=0.443  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        71 ~~~~~~~L~I~~~~~~-DsG~Y~C~~~~   97 (116)
T 1tvd_A           71 LTQKAFHLVISPVRTE-DSATYYCAFTL   97 (116)
T ss_dssp             GGGTEEEEEESSCCGG-GCEEEEEEEEC
T ss_pred             cCCCEEEEEEccCChH-HCEEEEEEEeC
Confidence            4667889999999999 99999999986

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.02  E-value=7.5e-06  Score=44.59  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=26.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        67 r~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~   99 (114)
T 1eeq_A           67 RFSGSGSGTDFTLTISSLQAE-DVAVYYCQQYYS   99 (114)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSS
T ss_pred             CEEEeecCCEEEEEECCCCcc-cCEEEEEEEeeC
Confidence            444444566789999999999 999999999863

>1kxv_C Camelid VHH domain CAB10; beta 8 alpha 8, beta barrel, hydrolase, immune system; 1.60A {Camelus dromedarius} SCOP: b.1.1.1

Probab=98.02  E-value=1.1e-05  Score=44.52  Aligned_cols=28  Identities=11%  Similarity=0.178  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        73 ~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~  100 (121)
T 1kxv_C           73 NAKNTAYLQMDSLKPD-DTAMYYCKPSLR  100 (121)
T ss_dssp             SSTTEEEEEECSCCGG-GCEEEEEEEEES
T ss_pred             CCCCEEEEEECCCCHH-HCEEEEEEEEec
Confidence            4567899999999999 999999999874

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.01  E-value=3.1e-06  Score=45.88  Aligned_cols=33  Identities=15%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        65 R~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~   97 (111)
T 1j05_L           65 RFSGTGSRTDFTLIIDPVEAD-DVATYYCQQTNE   97 (111)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSS
T ss_pred             cEEEEccCCEEEEEECCCCcc-cCEEEEEEEecC
Confidence            444444566789999999999 999999999763

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.00  E-value=1.7e-05  Score=46.28  Aligned_cols=41  Identities=15%  Similarity=0.160  Sum_probs=32.2

Q ss_pred             CCCCeEEEEEcc-ceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          11 PDSGRYDLIISN-ASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        11 ~~~~~~~l~I~~-v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ...+..+|.|.+ +..+ |+|.|+|.+.|.   .+..+..+.|.|.
T Consensus       155 ~~~~~~~L~i~~~~~~~-d~G~Y~C~a~N~---~g~~~~~~~l~V~  196 (197)
T 2j8h_A          155 VTRSFTSLVFPNGVERK-DAGFYVVCAKNR---FGIDQKTVELDVA  196 (197)
T ss_dssp             ECSSEEEEECTTCCCGG-GCEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             EcCCceEEEEeCCCCcc-cCEeEEEEEEeC---CCcEeEEEEEEEe
Confidence            334567899999 9999 999999999995   4556666777664

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.00  E-value=7.7e-06  Score=44.45  Aligned_cols=27  Identities=30%  Similarity=0.495  Sum_probs=24.6

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        67 ~~~~~~L~I~~v~~~-DsG~Y~C~~~n~   93 (113)
T 1h5b_A           67 RARYSTLHIRDAQLE-DSGTYFCAAEAS   93 (113)
T ss_dssp             SSSEEEEEECSCCGG-GCEEEEEEEECS
T ss_pred             CCCEEEEEECCCChh-hCEEEEEEEecC
Confidence            567889999999999 999999999874

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=97.99  E-value=1.9e-05  Score=43.00  Aligned_cols=32  Identities=28%  Similarity=0.128  Sum_probs=26.0

Q ss_pred             EEEEe--CCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYR--PDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~--~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      |+.+.  ...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        67 R~~~~~~~~~~~~~L~I~~~~~~-DsG~Y~C~~~~  100 (115)
T 2atp_B           67 RNIILESSDSRRPFLSIMNVKPE-DSDFYFCATVG  100 (115)
T ss_dssp             CCEEEESTTSSSCEEEECSCCGG-GCEEEEEEEEC
T ss_pred             cEEEEEeCCCCEEEEEECCCCHH-HCEEEEEeEcc
Confidence            44443  3666789999999999 99999999875

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=97.99  E-value=2.9e-05  Score=45.23  Aligned_cols=41  Identities=24%  Similarity=0.289  Sum_probs=30.5

Q ss_pred             CCCCeEEEEEccce-eeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          11 PDSGRYDLIISNAS-FERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        11 ~~~~~~~l~I~~v~-~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ...+...|.|.+++ .+ |+|.|+|.+.|.   .+.....+.|.|.
T Consensus       148 ~~~~~~~L~i~~~~~~~-d~G~Y~C~a~N~---~g~~~~~~~l~V~  189 (190)
T 2wv3_A          148 NKENYTELNIVNLQITE-DPGEYECNATNS---IGSASVSTVLRVR  189 (190)
T ss_dssp             ECSSEEEEEECSCCTTT-SCEEEEEEEECS---SCEEEEEEEEEEE
T ss_pred             cCCCeeEEEEEeccccC-CCEEEEEEEEec---CCcceeEEEEEEE
Confidence            33445579999999 59 999999999985   3455555666654

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=97.99  E-value=6.6e-06  Score=44.94  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=27.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        66 R~~~~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~   98 (115)
T 2otu_A           66 RFSGSSSGADRYLSISNIQPE-DEAIYICGVGDT   98 (115)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEEEEC
T ss_pred             CEEEEccCCEEEEEECCCChh-HCEEEEEEEecC
Confidence            455444567789999999999 999999999874

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=97.98  E-value=3.6e-06  Score=46.48  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=27.0

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        63 R~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~   95 (119)
T 2e27_L           63 RFSGSGSGRDYSFSISNLEPE-DAATYYCLQYDN   95 (119)
T ss_dssp             TEEEEEETTEEEEEECSCCGG-GCEEEEEEECGG
T ss_pred             cEEEEccCCEEEEEECCCChH-HCEEEEEEEccC
Confidence            454444566889999999999 999999999863

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=97.98  E-value=5e-06  Score=44.47  Aligned_cols=30  Identities=20%  Similarity=0.591  Sum_probs=26.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        13 ~~~~v~~G~~~~l~C~~~-g~P~p~v~W~k~   42 (100)
T 3knb_A           13 SDISIDEGKVLTVACAFT-GEPTPEVTWSCG   42 (100)
T ss_dssp             SEEEEETTSEEEEEEEEE-EESCCEEEEEET
T ss_pred             CcEEEeCCCeEEEEEEEE-EecCCEEEEEEC
Confidence            456889999999999985 899999999975

>1yc7_A Anti-VSG immunoglobulin heavy chain variable domain caban33; antibody, camel antibody, immune system; 1.60A {Camelus dromedarius} PDB: 1yc8_A 1yzz_A

Probab=97.97  E-value=1.6e-05  Score=44.16  Aligned_cols=29  Identities=17%  Similarity=0.367  Sum_probs=25.3

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        72 ~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~  100 (124)
T 1yc7_A           72 DNAKNTVYLQMNSLQRE-DTGMYYCQIQCG  100 (124)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEEEC
T ss_pred             ECCCCEEEEEECCCCHH-HCEEEEEEEEeC
Confidence            44567899999999999 999999999873

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=97.97  E-value=5.8e-06  Score=44.55  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=27.0

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        61 r~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~   93 (107)
T 1i8k_A           61 RFSSSGTGTDFVFTIENTLSE-DVGDYYCLQSFN   93 (107)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSS
T ss_pred             CEEEEccCCEEEEEECCCCHH-HCEEEEEEEeeC
Confidence            454444567789999999999 999999999763

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=97.96  E-value=8.6e-06  Score=46.73  Aligned_cols=48  Identities=17%  Similarity=0.115  Sum_probs=33.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+..  .........|.|..
T Consensus        76 Rfs~~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~~--~~~fg~GT~L~V~~  123 (146)
T 2yc1_B           76 RFTGSGSGTDFTLTISSLEPE-DFAIYYCQQYRYS--PRTFGQGTKVEIKR  123 (146)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCSEEEEEECSSS--SCEECCCEEEEEC-
T ss_pred             CeEEecCCCEEEEEECCCCHH-HCEEEEEEEecCC--CCeECCCEEEEEeC
Confidence            455444566889999999999 9999999998642  12223345677753

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=97.96  E-value=7.7e-06  Score=44.74  Aligned_cols=33  Identities=15%  Similarity=0.219  Sum_probs=27.3

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        67 rf~~~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~   99 (114)
T 2hp4_A           67 RFSGKRLGDTFVLTLSDFRRE-NEGYYFCSALSN   99 (114)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEEEET
T ss_pred             cEEEEecCCEEEEEECCCCHH-HCEEEEEEEecC
Confidence            455544566789999999999 999999999873

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}

Probab=97.96  E-value=3e-05  Score=41.97  Aligned_cols=27  Identities=22%  Similarity=0.459  Sum_probs=24.2

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..+.++|+|.+++.+ |+|.|.|.+...
T Consensus        64 ~~~~~~L~I~~l~~~-Dsg~Y~C~~~~~   90 (106)
T 2frg_P           64 GGGLLQVEMVTLQEE-DAGEYGCMVDGA   90 (106)
T ss_dssp             ETTEEEEEECSCCGG-GCEEEEEEEEET
T ss_pred             CCCEEEEEEccCCHH-HCEEEEEEeecC
Confidence            466799999999999 999999999874

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=97.96  E-value=1.4e-05  Score=44.19  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=23.9

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.
T Consensus        75 ~~~~~~~sL~I~~v~~~-DsG~Y~C~~~  101 (121)
T 2xt1_B           75 DDDKNILYLQMNDLKPE-DTAMYYCKAS  101 (121)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEET
T ss_pred             eCCCCEEEEEECCCCHH-HCEEEEEEEE
Confidence            44567899999999999 9999999986

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=97.95  E-value=1.2e-05  Score=47.32  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=29.2

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..|.|.+++.+ |+|.|+|.+.|.   ....+..+.|.|.
T Consensus       176 ~~L~i~~~~~~-d~G~Y~C~a~N~---~g~~~~~~~l~V~  211 (214)
T 3jz7_A          176 PVISVKNASSE-YSGTYSCTVQNR---VGSDQCMLRLDVV  211 (214)
T ss_dssp             SEEEECSCCGG-GCEEEEEEEECS---SCEEEEEEEECCB
T ss_pred             CEEEEecCCHH-HCEEEEEEEEcC---CCcEEEEEEEEEe
Confidence            37999999999 999999999985   4455666677665

>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}

Probab=97.95  E-value=1.2e-05  Score=53.72  Aligned_cols=42  Identities=24%  Similarity=0.359  Sum_probs=29.6

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..++++|+|++++.+ |+|.|.|.+.+... .......+.|.|+
T Consensus       463 ~~~~~sL~I~~v~~~-D~g~Y~C~v~~~~~-~~~~~~~l~l~V~  504 (507)
T 3oai_A          463 RWKDGSIVIHNLDYS-DNGTFTCDVKNPPD-IVGKTSQVTLYVF  504 (507)
T ss_dssp             GGTBCCEEECSCCGG-GCEEEEEEEEETTE-EEEEEEEEEEEEE
T ss_pred             CCCceeEEECCCCcc-cCeEEEEEEEcCCC-cCCceeEEEEEEe
Confidence            447789999999999 99999999987411 1223333455554

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=97.95  E-value=2.5e-05  Score=44.12  Aligned_cols=48  Identities=15%  Similarity=0.139  Sum_probs=33.9

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .|+......+.++|+|.+++.+ |+|.|.|.+.+..  .........|.|.
T Consensus        65 ~Rf~~~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~~--~~~fg~GT~L~V~  112 (137)
T 3bdb_A           65 SRFSMTVNDQKFDLNIIGARED-DGGEYFCGEVEGI--IIKFTSGTRLQFE  112 (137)
T ss_dssp             TTEEEEESSSBEEEEEESCCST-TCEEEEEEEECSS--CEEEEEEEEECCC
T ss_pred             CcEEEEecCCEEEEEECCCCHH-HCEEEEEEEccCC--eEEECCCEEEEEE
Confidence            4555555677889999999999 9999999998641  1223334456554

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=97.95  E-value=3.1e-05  Score=42.11  Aligned_cols=26  Identities=31%  Similarity=0.356  Sum_probs=22.8

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...++|+|.+++.+ |+|.|.|.+.+.
T Consensus        74 ~~~~sL~I~~~~~~-DsG~Y~C~~~~~   99 (116)
T 3bj9_1           74 RNRGYLSISELQPE-DEAMYYCAMGAR   99 (116)
T ss_dssp             GTEEEEEECSCCGG-GCEEEEEEECCS
T ss_pred             CceEEEEECCCChh-HCEEEEEEEeCC
Confidence            34679999999999 999999999864

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.95  E-value=2.8e-05  Score=45.01  Aligned_cols=40  Identities=25%  Similarity=0.443  Sum_probs=31.0

Q ss_pred             CCCeEEEEEccce-eeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          12 DSGRYDLIISNAS-FERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~-~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..+...|.|.+++ .. |+|.|+|.+.|.   .+.....+.|.|.
T Consensus       142 ~~~~~~L~i~~v~~~~-d~G~Y~C~a~N~---~g~~~~~~~l~V~  182 (184)
T 3b5h_A          142 SQGRSELHIENLNMEA-DPGQYRCNGTSS---KGSDQAIITLRVR  182 (184)
T ss_dssp             ETTEEEEEECSCCTTT-SSEEEEEEEEET---TEEEEEEEEEEEC
T ss_pred             cCCeeEEEEeeccccc-cCceEEEEEEeC---CCcceEEEEEEEe
Confidence            3455689999999 89 999999999995   4555555666664

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=97.95  E-value=1.4e-05  Score=47.84  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=30.0

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      ..+..+|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|+
T Consensus       167 ~~~~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~L~  204 (207)
T 3rbs_A          167 KDGICTLLITEFSKK-DAGIYEVILKDD---RGKDKSRLKLV  204 (207)
T ss_dssp             SSEEEEEEETTCCGG-GCEEEEEEEEET---TEEEEEEEEEC
T ss_pred             CCCEEEEEECCCCcc-cCEEEEEEEEcC---CCEEEEEEEEe
Confidence            455668999999999 999999999995   45555555554

>3cx5_J Heavy chain (VH) of FV-fragment; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 1kb9_J* 1kyo_J* 1p84_J* 2ibz_X* 1ezv_X* 3cxh_J*

Probab=97.94  E-value=1.4e-05  Score=44.46  Aligned_cols=28  Identities=14%  Similarity=0.351  Sum_probs=24.7

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        73 ~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~  100 (127)
T 3cx5_J           73 DTSKNQFFLKLNSVTTE-DTATYYCARSE  100 (127)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             eCCCCEEEEEECCCCHH-HCEEEEEEEEe
Confidence            34577899999999999 99999999876

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=97.94  E-value=1.1e-05  Score=44.06  Aligned_cols=27  Identities=11%  Similarity=0.266  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        73 ~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~   99 (116)
T 1a2y_B           73 NSKSQVFLKMNSLHTD-DTARYYCARER   99 (116)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEEES
T ss_pred             CCCCEEEEEECCCCHH-HCEEEEEEEec
Confidence            3467899999999999 99999999986

>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1

Probab=97.94  E-value=1.6e-05  Score=43.31  Aligned_cols=27  Identities=15%  Similarity=0.142  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        73 ~~~~~~~L~I~~~~~~-DsG~Y~C~~~~   99 (114)
T 1sjv_A           73 NAKKTVYLEMNSLEPE-DTAVYYCYTHY   99 (114)
T ss_dssp             TTTCCEEEEECSCCGG-GCSEEEEEECC
T ss_pred             CCCCEEEEEECCCCHH-HCEEEEEeEEc
Confidence            3467789999999999 99999999875

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.94  E-value=3.9e-05  Score=46.20  Aligned_cols=28  Identities=14%  Similarity=0.269  Sum_probs=24.8

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...+..+|+|.+++.+ |+|.|+|.+.+.
T Consensus       194 ~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~  221 (238)
T 2p1y_A          194 KREKKLSLHIADSQPG-DSATYFCAAIDT  221 (238)
T ss_dssp             TTTTEEEEEETTCCGG-GCEEEEEEEEET
T ss_pred             CCCCeEEEEEcCCCHH-HCEEEEEEEeeC
Confidence            4556789999999999 999999999985

>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like domain, immunoglobulin-like, immune system receptor; HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1

Probab=97.93  E-value=4.5e-05  Score=42.81  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=25.9

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .+...+.++|+|.+++.+ |+|.|.|.+...
T Consensus        74 ~~~s~~~~~LtIs~lq~e-Dsa~Y~Ca~~~~  103 (127)
T 1q8m_A           74 DYHDHGLLRVRMVNLQVE-DSGLYQCVIYQP  103 (127)
T ss_dssp             EETTTTEEEEEECSCCGG-GCEEEEEEECCC
T ss_pred             EeCCCCEEEEEECCCCHH-HCEEEEEEEECC
Confidence            346678999999999999 999999988753

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=97.93  E-value=1.2e-05  Score=44.11  Aligned_cols=28  Identities=21%  Similarity=0.230  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+...
T Consensus        74 ~~~~~~~L~I~~~~~~-DsG~Y~C~~~~~  101 (120)
T 1n4x_H           74 TSTSTAFLQINNLKNE-DTATYFCVRDRH  101 (120)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEEESS
T ss_pred             CCCCEEEEEECCCCHH-HCEEEEEEEEcc
Confidence            4467889999999999 999999999863

>1zvh_A Immunoglobulin heavy chain antibody variable domain; beta sandwich, immunoglobulin fold, protein-protein heterocomplex; 1.50A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 3dwt_A 1g6v_K 1zv5_A 1kxq_E

Probab=97.93  E-value=2.2e-05  Score=44.20  Aligned_cols=29  Identities=14%  Similarity=0.170  Sum_probs=25.5

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        73 ~~~~~~~sL~I~~~~~~-DsG~Y~C~~~~~  101 (134)
T 1zvh_A           73 DNAENTVYLQMNSLKPE-DTALYYCAAARQ  101 (134)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCHH-HCEEEEEEEecC
Confidence            34577899999999999 999999999873

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=97.93  E-value=3.6e-05  Score=52.44  Aligned_cols=77  Identities=17%  Similarity=0.305  Sum_probs=48.2

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE--eCCCCceecCCCcEEEEEEcCCCCCC-CeEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI--SPGANPVATEGRAIELVCSTSGGSPD-PQIS   93 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i--~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~   93 (98)
                      .|+|....+. |.+.|+|++.+.... ......+.+.+. .+.+|.+  .. +......|..+.|.|.+.+.+|. ..++
T Consensus       409 ~L~i~~~~~~-~~~~y~C~v~~~~~~-~~~~~~~~~~~~-~~~~P~V~~~~-~~~~~~~~~~~~L~C~v~gfyP~~i~v~  484 (551)
T 1ntl_A          409 ELPIMHQDWL-NGKEFKCRVNSAAFP-APIEKTISKTKG-RPKAPQLYTIP-PPKEQMAKDKVSLTCMITDFFPEDITVE  484 (551)
T ss_pred             eeEcCHHHcc-CCceEEEEEecCCCC-CCeEEEEecCCC-CCcCCceEEeC-CChhhccCCceEEEEEEEEeECCCCEEE
Confidence            4677777787 889999999885321 122223333332 1223332  22 22334568889999999877875 5899


Q ss_pred             EEec
Q psy5866          94 VTLQ   97 (98)
Q Consensus        94 W~~~   97 (98)
                      |+++
T Consensus       485 W~k~  488 (551)
T 1ntl_A          485 WQWN  488 (551)
T ss_pred             EEEC
Confidence            9975

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=97.93  E-value=2.2e-05  Score=43.88  Aligned_cols=30  Identities=27%  Similarity=0.473  Sum_probs=26.0

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .+...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        59 ~~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~   88 (126)
T 3moq_A           59 VNKGSKSFSLRISDLRVE-DSGTYKCQAFYV   88 (126)
T ss_dssp             EETTTTEEEEEECSCCGG-GCEEEEEEEEEE
T ss_pred             EeCCCCEEEEEECcCChH-hCEEEEEEEEEc
Confidence            345567899999999999 999999999874

>1xiw_D Immunoglobulin heavy chain variable region; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy3_B

Probab=97.93  E-value=1.7e-05  Score=43.78  Aligned_cols=27  Identities=15%  Similarity=0.202  Sum_probs=24.3

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        74 ~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~  100 (122)
T 1xiw_D           74 KSSSTAYMELLSLTSE-DSAVYYCARSG  100 (122)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             cCCCEEEEEECCCCHH-HCEEEEEEEec
Confidence            4467899999999999 99999999987

>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D

Probab=97.93  E-value=1.3e-05  Score=44.17  Aligned_cols=28  Identities=14%  Similarity=0.264  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        74 ~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~  101 (123)
T 2wzp_D           74 SGKNTVYLQMNSLKPE-DTAIYYCAARSG  101 (123)
T ss_dssp             TTEEEEEEEECSCCGG-GCEEEEEEEEES
T ss_pred             CCCCEEEEEECCCCHH-HCEEEEEEEecC
Confidence            4466789999999999 999999999874

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=97.93  E-value=1.4e-05  Score=43.90  Aligned_cols=28  Identities=14%  Similarity=0.178  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        74 ~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~  101 (120)
T 3b9v_A           74 TSKNTAYLQMNSLRAE-DTAVYYCARWGG  101 (120)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEEECT
T ss_pred             CCCCEEEEEECCCCHH-HCEEEEEEEEcC
Confidence            3467889999999999 999999999863

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=97.92  E-value=9.9e-05  Score=46.82  Aligned_cols=78  Identities=14%  Similarity=0.222  Sum_probs=47.5

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE--eCCCCceecCCCcEEEEEEc--CCCCC--
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI--SPGANPVATEGRAIELVCST--SGGSP--   88 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i--~~~~~~~~~~g~~~~l~C~~--~~~~p--   88 (98)
                      ...|+|..+... |+|.|+|.+.+..+. ...+.  .+.|...+. +.+  ..........+..+.|.+.+  .+|.|  
T Consensus        51 T~tLti~s~t~s-dSG~YqCvVTDa~Gc-s~tSs--~VtVT~~a~-l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA  125 (304)
T 3shs_A           51 TATLTVADATSE-NAGSYKVTVQDTDTM-TSVES--EVFLMEEAE-LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPA  125 (304)
T ss_dssp             SSEEEESSCCGG-GCEEEEEEEEETTTC-CEEEC--CCEEECBCC-EEEEESSCSEEEECSSCCEEEEEEEEETTSCCSS
T ss_pred             cceEEeeecccc-CCeEEEEEEEECCCC-eeeee--eEEEeccCc-eeEEecCCCceeccCCCeEEEEEEEeccCCCCcc
Confidence            347899999999 999999999985332 11222  223322221 122  21122334456678888876  66666  


Q ss_pred             ---CCeEEEEec
Q psy5866          89 ---DPQISVTLQ   97 (98)
Q Consensus        89 ---~~~~~W~~~   97 (98)
                         ..++.|+++
T Consensus       126 ~~~~yTYQWyKn  137 (304)
T 3shs_A          126 DNYELHYSWSKG  137 (304)
T ss_dssp             TTCCCEEEEEET
T ss_pred             cCCCceeEEeeC
Confidence               569999985

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=97.92  E-value=7.9e-06  Score=44.43  Aligned_cols=33  Identities=21%  Similarity=0.257  Sum_probs=26.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        66 R~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~   98 (113)
T 1dlf_L           66 RFSGSGSGTDFTLKISRVEAE-DLGVYFCSQSTH   98 (113)
T ss_dssp             TEEEEEETTEEEEEECSCCGG-GCEEEEEEECSS
T ss_pred             CEEEEccCCEEEEEECCCChH-HCEEEEEEEecC
Confidence            444444567889999999999 999999999763

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=97.92  E-value=1.1e-05  Score=44.09  Aligned_cols=32  Identities=19%  Similarity=0.403  Sum_probs=27.1

Q ss_pred             EEEE--eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDY--RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~--~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      |+..  +...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        62 R~~~~~~~~~~~~~L~I~~~~~~-DsG~Y~C~~~~   95 (116)
T 1fo0_A           62 HYSLNFQKPKSSIGLIITATQIE-DSAVYFCAMRG   95 (116)
T ss_dssp             TEEEEEEGGGTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             cEEEEEeCCCCEEEEEECCCChh-hCEEEEEEEEc
Confidence            4444  55677899999999999 99999999986

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=97.92  E-value=2.3e-05  Score=45.28  Aligned_cols=43  Identities=30%  Similarity=0.505  Sum_probs=33.1

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ   59 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~   59 (98)
                      ....|.|.+++.+ |+|.|+|.+.+..  ....+..+.|.|..+|.
T Consensus       132 ~~~~L~i~~v~~~-d~G~Y~C~a~n~~--~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          132 ENHNISITNATVE-DSGTYYCTGKVWQ--LDYESEPLNITVIKAPR  174 (176)
T ss_dssp             CSSEEEESSCCGG-GCEEEEEEEEETT--EEEECCCEEEEEECSCC
T ss_pred             CCCeEEECCCCcc-cCEEEEEEEEeCC--cceEecCEEEEEecCCC
Confidence            3457999999999 9999999999851  24455567888876654

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=97.91  E-value=1.3e-05  Score=44.13  Aligned_cols=28  Identities=18%  Similarity=0.197  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        74 ~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~  101 (121)
T 1j05_H           74 TSSNTAYLQLTSLTSE-DTAVYYCAPFGY  101 (121)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEEEBT
T ss_pred             CCCCEEEEEECCCCHH-HCEEEEEEEEcC
Confidence            3467889999999999 999999999874

>2d7t_H Anti polyhydroxybutyrate antibody FV, heavy chain; plastic, immune system; 1.70A {Homo sapiens}

Probab=97.91  E-value=2.1e-05  Score=44.63  Aligned_cols=43  Identities=19%  Similarity=0.166  Sum_probs=30.4

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+....  .........|.|..
T Consensus        74 ~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~~~--~~~fg~GT~L~V~~  116 (139)
T 2d7t_H           74 TSISTVYMEVRRLRSD-DTAVYYCATGWWG--MDVWGQGTLVTVSS  116 (139)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEECSSS--CCEECCCEEEEECC
T ss_pred             CCCCEEEEEECcCCHH-HCEEEEEEEeeCC--cCEECCCEEEEEec
Confidence            4467899999999999 9999999987521  12222334666643

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=97.91  E-value=2.8e-05  Score=46.16  Aligned_cols=43  Identities=21%  Similarity=0.204  Sum_probs=31.7

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      .+...|.|.+++.+ |+|.|+|.+.|..+  ...+..+.|.|..++
T Consensus       164 ~~~~~L~i~~~~~~-d~G~Y~C~a~N~~G--~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          164 ESIGALQIEQSEES-DQGKYECVATNSAG--TRYSAPANLYVRGTK  206 (212)
T ss_dssp             TTEEEEEECSCCGG-GCEEEEEEEEETTE--EEECCCEEEEEEC--
T ss_pred             CCeEEEEEcCCCcc-cCEEEEEEEECCCC--ccccccccEEEEecc
Confidence            34578999999999 99999999999622  334455777777554

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=97.91  E-value=1.9e-05  Score=43.84  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=23.2

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        71 ~~~~~L~I~~v~~~-DsG~Y~C~~~~~   96 (127)
T 2jju_A           71 NLDFSISISNITPA-DAGTYYCVKFRK   96 (127)
T ss_dssp             CCBCCEEECSCCGG-GCEEEEEEEEEC
T ss_pred             CCEEEEEECCCCHH-HCEEEEEEEEcC
Confidence            34678999999999 999999999874

>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer, immunoglobulin superfamily (beta S fold, receptor, signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C

Probab=97.90  E-value=2.5e-05  Score=43.64  Aligned_cols=31  Identities=16%  Similarity=0.318  Sum_probs=26.7

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +......+.++|+|.+++.+ |+|.|.|.+..
T Consensus        68 f~~~~~~~~~sL~I~~l~~~-Dsg~Y~C~~~~   98 (130)
T 3osk_A           68 CTGTSSGNQVNLTIQGLRAM-DTGLYICKVEL   98 (130)
T ss_dssp             EEEEEETTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EeccCCCCEEEEEEcCCChH-HCEEEEEEEEe
Confidence            55555678899999999999 99999999875

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.89  E-value=2.9e-05  Score=47.09  Aligned_cols=47  Identities=19%  Similarity=0.148  Sum_probs=32.9

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ++........++|+|.+++.+ |+|.|+|.+.+..  .........|.|.
T Consensus       195 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~~~~--~~~~g~~t~l~V~  241 (247)
T 2ghw_B          195 RFSGSGSGTDFTLTISRLEPE-DFAVYYCQQRSNW--PPTFGQGTKVEVK  241 (247)
T ss_dssp             TEEEECSSSEEEEEECSCCGG-GCEEEEEEECSSS--SCEECCCEEEEEC
T ss_pred             CEEEecCCCeEEEEECcCCHH-HCEEEEEEEccCC--CceEcCCEEEEEC
Confidence            344444556788999999999 9999999998742  2333344566664

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=97.88  E-value=2e-05  Score=42.95  Aligned_cols=28  Identities=29%  Similarity=0.605  Sum_probs=24.9

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        60 ~~~~~~~~L~I~~~~~~-DsG~Y~C~~~~   87 (113)
T 1sq2_N           60 NSGSKSFSLRINDLTVE-DGGTYRCGLGV   87 (113)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEECB
T ss_pred             eCCCCEEEEEECCCChh-hCEEEEEEEEe
Confidence            34567899999999999 99999999986

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=97.88  E-value=3.6e-05  Score=52.91  Aligned_cols=48  Identities=19%  Similarity=0.280  Sum_probs=39.0

Q ss_pred             ceeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           3 KVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         3 ~~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .+.++......+.++|.|.++... |+|.|+|+|.|.   .+..+..+.|+|
T Consensus       525 ~s~~~~i~~~~~~~~L~I~~~~~~-D~G~Yt~~A~N~---~G~~~~~v~l~V  572 (573)
T 3uto_A          525 QSVKYMKRYNGNDYGLTINRVKGD-DKGEYTVRAKNS---YGTKEEIVFLNV  572 (573)
T ss_dssp             SSSSEEEEEETTEEEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEE
T ss_pred             cCCcEEEEEcCCEEEEEEcCCCcc-cCcEEEEEEEeC---CCcEEEEEEEEE
Confidence            345566666678899999999999 999999999996   577777777776

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=97.88  E-value=1.4e-05  Score=48.80  Aligned_cols=49  Identities=10%  Similarity=0.102  Sum_probs=33.9

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP   57 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~   57 (98)
                      ++......+.++|+|.+++.+ |+|.|.|.+.+..  .........|.|...
T Consensus       197 r~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~n~~--~~~fg~gt~l~v~~~  245 (253)
T 3uzq_A          197 RFSGSGSRTDFTLTINPVEAD-DVATYFCQRSNEV--PWTFGGGTKLEIKRP  245 (253)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSS--SCCBCCCEEEEECCC
T ss_pred             ceEEeCCCCEEEEEECCCCHH-HCEEEEEEEccCC--CcEECCCEEEEEcCC
Confidence            344444456778999999999 9999999998742  233334456776533

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=97.88  E-value=1.6e-05  Score=55.63  Aligned_cols=68  Identities=24%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCee--eEeeEEEEEECCCCCCEEeCCCCceecCCCcEEEEEEcC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDL--HSQVYTVTVLTPPQPPKISPGANPVATEGRAIELVCSTS   84 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~--~~~~~~l~v~~~~~~p~i~~~~~~~~~~g~~~~l~C~~~   84 (98)
                      +..|.|.+++.. |+|.|.|.+.+...+...  ....+.|.|.++|....... ......+|..+.++|.+.
T Consensus       585 ~~~LlI~~v~~~-DsG~Y~C~A~e~~~~~~~~~~~~~~~l~V~v~P~~~~~p~-~~~~~~~g~~~~~~~~~~  654 (663)
T 1olz_A          585 RKNLLIFNLSEG-DSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPT-LSVVQTEGSRIATKVLVA  654 (663)
T ss_dssp             TTCEEECSCCGG-GCEEEEEEEEEECSSSEEEEEEEEEEEEEEC----------------------------
T ss_pred             CCeEEEEecCcc-cCeEEEEEEEECccCCCceEEEEEEEEEEEeCCccCCCCC-ChhhhhcCCceEEEeecc
Confidence            346999999999 999999999996322222  23567788887765433322 346788999999999874

>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel, hydrolase, immune system; 2.00A {Camelus dromedarius} SCOP: b.1.1.1

Probab=97.88  E-value=2.5e-05  Score=43.49  Aligned_cols=28  Identities=14%  Similarity=0.178  Sum_probs=24.6

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        72 ~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~   99 (127)
T 1kxt_B           72 DNAANTAYLQMDSLKPE-DTAVYYCAAGP   99 (127)
T ss_dssp             CSSSSEEEEEECSCCGG-GCEEEEEEECS
T ss_pred             eCCCCEEEEEECcCCHH-HCEEEEEEEEc
Confidence            34577899999999999 99999999875

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=97.88  E-value=8.5e-05  Score=42.85  Aligned_cols=36  Identities=19%  Similarity=0.322  Sum_probs=29.4

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..|.|.+++.+ |+|.|+|.+.+.   .......+.|.|+
T Consensus       152 ~~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~  187 (189)
T 2v5t_A          152 TELTVRNIINS-DGGPYVCRATNK---AGEDEKQAFLQVF  187 (189)
T ss_dssp             TEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             CEEEEcCCChh-hCeeEEEEEEeC---CCceeEEEEEEEE
Confidence            46999999999 999999999995   4555666777765

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=97.88  E-value=0.00024  Score=44.19  Aligned_cols=89  Identities=16%  Similarity=0.109  Sum_probs=53.6

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC-CCCC-----------------EEeC-
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP-PQPP-----------------KISP-   65 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~-~~~p-----------------~i~~-   65 (98)
                      ..+..+...+...|.+++++.+ |...|.|..... ...+..  ...++|-.+ +..|                 .+.. 
T Consensus        68 ~TiSrD~s~nt~yLqm~sL~~e-DTAvYYCAr~~~-~d~WGq--GT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQs  143 (254)
T 4f9p_D           68 TTLTADQSSSTAYMQLSSLTSD-DSAVYFCARSDY-GAYWGQ--GTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQS  143 (254)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEECEESSS-CCEECC--CEEEEECC-------------------CCSCCEEEE
T ss_pred             EEEeeccCCCcCeeEEccCCCC-CCEEEEEEecCC-CCCcCC--CEEEEEeCCCCcCCCCCCCccccccccccccccccC
Confidence            4556677888899999999999 999999964321 000111  122333211 0001                 1111 


Q ss_pred             CCCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          66 GANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        66 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      .....+.+|+.++|+|.+.. .-.-.+.|++|.
T Consensus       144 P~slsvs~G~~vtlsC~~S~-~~~~~l~WyqQ~  175 (254)
T 4f9p_D          144 PVTLSVTPGDSVSLSCRASQ-SISNNLHWYRQK  175 (254)
T ss_dssp             CSEEEECTTCEEEEEEEESS-CCTTCCEEEEEC
T ss_pred             CceeEEcCCCcEeeEEEccC-cccCCcEEEEEC
Confidence            12346889999999999763 333458999873

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=97.87  E-value=9.9e-06  Score=43.94  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=26.7

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        64 R~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~   96 (111)
T 1i3g_L           64 RFTGSGSGTDFTLTISNVQSE-DLADYFCQQYSS   96 (111)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCSEEEEEECSS
T ss_pred             cEEEEcCCCEEEEEECCCCHH-HCEEEEEEEecC
Confidence            444444566789999999999 999999999763

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=97.87  E-value=5.9e-05  Score=43.74  Aligned_cols=46  Identities=15%  Similarity=0.219  Sum_probs=33.0

Q ss_pred             EEEEeCCCCeEEEEEcccee-eccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASF-ERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~-~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ++..........|.|.++.. + |+|.|+|.+.|.   .+..+..+.|.|.
T Consensus       149 ~~~~~~~~~~~~L~i~~~~~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~  195 (197)
T 3lcy_A          149 NITIENTEHYTHLVMKNVQRKT-HAGKYKVQLSNV---FGTVDAILDVEIQ  195 (197)
T ss_dssp             SEEEEECSSEEEEEESSCCHHH-HCEEEEEEEECS---SCEEEEEEEEEEE
T ss_pred             ceEEEEcCCEEEEEEccccchh-hCceEEEEEEcC---cCceEEEEEEEEe
Confidence            33344444457899999985 8 999999999985   4455666667664

>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1

Probab=97.87  E-value=1.4e-05  Score=43.66  Aligned_cols=30  Identities=20%  Similarity=0.351  Sum_probs=25.0

Q ss_pred             EEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           8 DYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         8 ~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ......+.++|+|.+++.+ |+|.|.|.+..
T Consensus        67 ~~~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~   96 (117)
T 1dqt_A           67 SGTFNESRVNLTIQGLRAV-DTGLYLCKVEL   96 (117)
T ss_dssp             EEEEETTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             ecccCCCEEEEEEeCCCcc-cCEEEEEEEee
Confidence            4444556889999999999 99999999865

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.86  E-value=1.3e-05  Score=42.14  Aligned_cols=39  Identities=15%  Similarity=0.356  Sum_probs=28.4

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ...|.|.+++.+ |+|.|+|.+.+... ....+..+.|.|.
T Consensus        56 ~~~L~i~~v~~~-d~G~Y~C~a~n~~~-~~~~s~~~~v~V~   94 (96)
T 2ens_A           56 SPVLILPEIGPQ-DQGTYSCVATHSSH-GPQESRAVSISII   94 (96)
T ss_dssp             CSEEEEESCCTT-TCEEEECEECCSSC-CCEECCCEEEEEC
T ss_pred             CCEEEECCCCcc-cCEEEEEEEEeCCC-CcEEEEEEEEEEe
Confidence            457999999999 99999999998432 2234444556553

>1i3u_A Antibody VHH LAMA domain; VHH fragment, immune system; HET: RR1; 1.95A {Lama glama} SCOP: b.1.1.1 PDB: 1i3v_A

Probab=97.86  E-value=1.9e-05  Score=43.92  Aligned_cols=28  Identities=18%  Similarity=0.309  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        79 ~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~  106 (127)
T 1i3u_A           79 NAKNTVNLQMNSLKPE-DTAVYYCAAKTT  106 (127)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEEESC
T ss_pred             CCCCEEEEEECCCChh-hCEEEEEEEEcC
Confidence            3467899999999999 999999999863

>3nn8_A Engineered SCFV, heavy chain; beta barrel, antibody fragment, immunoglobulin, immune syste; 3.10A {Mus musculus}

Probab=97.86  E-value=3.4e-05  Score=42.64  Aligned_cols=28  Identities=18%  Similarity=0.265  Sum_probs=24.7

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        74 ~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~  101 (122)
T 3nn8_A           74 DKTSSTVYLELRSLTSE-DSSVYYCARRG  101 (122)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             eCCCCEEEEEECCCChh-hCEEEEEEEEe
Confidence            34577899999999999 99999999875

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=97.85  E-value=2.9e-05  Score=43.83  Aligned_cols=33  Identities=21%  Similarity=0.187  Sum_probs=27.0

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        68 Rf~~~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~  100 (135)
T 1p4b_L           68 RFSGSLIGDKAALTITGAQTE-DEAIYFCALWYS  100 (135)
T ss_dssp             TEEEEEETTEEEEEEESCCGG-GCEEEEEEEECS
T ss_pred             CEEEEcCCCEEEEEECCCChh-HCEEEEEEEecC
Confidence            455444566889999999999 999999999864

>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A

Probab=97.85  E-value=2.1e-05  Score=43.74  Aligned_cols=28  Identities=14%  Similarity=0.150  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ...+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        74 ~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~~  101 (127)
T 2x1q_A           74 NAKNLLYLEMLSLEPE-DTAVYYCAASSR  101 (127)
T ss_dssp             GGGTEEEEEECSCCGG-GCEEEEEEEECC
T ss_pred             CCCCEEEEEEcCCCHH-HCEEEEEEEEec
Confidence            4567899999999999 999999999863

>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A

Probab=97.85  E-value=2.3e-05  Score=43.19  Aligned_cols=32  Identities=13%  Similarity=0.180  Sum_probs=26.4

Q ss_pred             EEEEe--CCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYR--PDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~--~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      |+.+.  ...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        69 R~~~~~~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~  102 (123)
T 2p45_B           69 RMTISRDKGKNTVYLQMDSLKPE-DTATYYCAAGG  102 (123)
T ss_dssp             TEEEECCTTSSEEEEEESSCCGG-GCEEEEEEESS
T ss_pred             eEEEEEeCCCCEEEEEECCCCHH-HCEEEEEEEEe
Confidence            45544  3467899999999999 99999999875

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=97.85  E-value=2.1e-05  Score=49.03  Aligned_cols=49  Identities=16%  Similarity=0.158  Sum_probs=33.4

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      |+......+.++|+|.+++.+ |+|.|.|.+.+.............|.|.
T Consensus       201 r~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~~~~~~~~g~~t~l~V~  249 (280)
T 3fku_X          201 RFSASRSGNTASLTITGLQPE-DEADYYCSTWDSSLSAVVFGGGTKLTVL  249 (280)
T ss_dssp             TEEEEEETTEEEEEECSCCGG-GCSEEEEEEEETTTTEEEEBCCCEEEEC
T ss_pred             CEEEEccCCEEEEEECCCCHH-HCEEEEEEEecCCCCceEECCCEEEEEC
Confidence            444444566788999999999 9999999998853111223334566664

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.84  E-value=1.8e-05  Score=42.57  Aligned_cols=30  Identities=20%  Similarity=0.428  Sum_probs=23.7

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      +.+....+..+|.|.+++.+ |+|.|+|.+.
T Consensus        63 ~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~   92 (104)
T 1pd6_A           63 YIFESIGAKRTLTISQCSLA-DDAAYQCVVG   92 (104)
T ss_dssp             SEEEEETTEEEEEECSCSSS-SCEEEEEEET
T ss_pred             EEEEecCCEEEEEECCCCcc-cCEEEEEEEC
Confidence            33333445678999999999 9999999994

>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*

Probab=97.83  E-value=3.6e-05  Score=42.74  Aligned_cols=29  Identities=14%  Similarity=0.220  Sum_probs=24.8

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        74 ~~~~~~~~sL~I~~~~~~-Dsg~Y~Ca~~~  102 (123)
T 3k1k_C           74 RDDARNTVYLQMNSLKPE-DTAVYYCNVNV  102 (123)
T ss_dssp             EETTTTEEEEEECSCCGG-GCEEEEEEEES
T ss_pred             EeCCCCEEEEEECCCChh-hCEEEEEEEec
Confidence            344567899999999999 99999999864

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=97.82  E-value=4.4e-05  Score=42.26  Aligned_cols=29  Identities=21%  Similarity=0.543  Sum_probs=25.3

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        59 ~~~~~~~~~L~I~~~~~~-DsG~Y~C~~~~   87 (121)
T 2i24_N           59 VNRGSKSFSLRINDLTVK-DSGTYRCKPES   87 (121)
T ss_dssp             EETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             ecCCCCEEEEEECCCChh-hCEEEEEEEec
Confidence            345667899999999999 99999999975

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=97.81  E-value=1.4e-05  Score=43.33  Aligned_cols=27  Identities=15%  Similarity=0.348  Sum_probs=24.2

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.
T Consensus        66 ~~~~~~~~L~I~~~~~~-DsG~Y~C~~~   92 (112)
T 2z35_A           66 NKEATSFHLQKASVQES-DSAVYYCALS   92 (112)
T ss_dssp             BTTTTBCCEEESSCCST-TCSEEEEEEE
T ss_pred             cCCCCEEEEEECCCChh-hCEEEEEEEE
Confidence            45667889999999999 9999999997

>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}

Probab=97.81  E-value=3.6e-05  Score=42.03  Aligned_cols=29  Identities=14%  Similarity=0.161  Sum_probs=24.7

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        70 ~~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~   98 (115)
T 3k74_B           70 RDNAKNTLYLQMNSLTSE-DTAVYYCAKDW   98 (115)
T ss_dssp             EETTTTEEEEEECSCCGG-GCEEEEEEEST
T ss_pred             EcCCCCEEEEEECCCChH-hCEEEEEEEEc
Confidence            344567899999999999 99999999865

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=97.81  E-value=2.6e-05  Score=47.69  Aligned_cols=47  Identities=15%  Similarity=0.107  Sum_probs=32.3

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      |+........++|+|.+++.+ |+|.|.|.+.+..  .........|.|.
T Consensus       202 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~--~~~fg~gt~l~v~  248 (257)
T 3gkz_A          202 RFSGSGSGTSYSLTISSMEAE-DAASYFCHQWSSF--PFTFGSGTKLEIK  248 (257)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECSSS--SCEECCCEEEEEC
T ss_pred             CEEEecCCCEEEEEECCCChH-HCEEEEEEEccCC--ceEEcCCEEEEEE
Confidence            344444456778999999999 9999999998642  2233334566664

>3lh2_H FV 4E10 heavy chain; epitope-scaffold, immune system; 2.65A {Homo sapiens} PDB: 3h3p_H 3lhp_H 2xtj_D

Probab=97.80  E-value=5.4e-05  Score=42.95  Aligned_cols=29  Identities=14%  Similarity=0.205  Sum_probs=25.5

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+...
T Consensus        75 ~~~~~~~sLtI~~lq~~-Dsg~Y~C~~~~~  103 (137)
T 3lh2_H           75 DRSTSTAYLELNSLRPE-DTAVYYCAREGT  103 (137)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEEEE
T ss_pred             cCCCCEEEEEECCCChh-hCEEEEEEEEEC
Confidence            45677899999999999 999999998763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.80  E-value=3.4e-05  Score=49.27  Aligned_cols=39  Identities=10%  Similarity=0.086  Sum_probs=31.1

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP   57 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~   57 (98)
                      ..+|.|.+++.+ |+|.|+|.|.|.   .+..+..+.+.|..+
T Consensus       308 ~~~L~I~~v~~~-d~G~Y~C~a~N~---~G~~~~~~~l~V~~~  346 (347)
T 2ifg_A          308 HGCLRLNQPTHV-NNGNYTLLAANP---FGQASASIMAAFMDN  346 (347)
T ss_dssp             EEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEECSCCC
T ss_pred             ceEEEECCCCcc-cCceEEEEEecC---CCceeeEEEEEecCC
Confidence            567999999999 999999999995   456666666666543

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=97.79  E-value=3.6e-05  Score=43.79  Aligned_cols=32  Identities=19%  Similarity=0.403  Sum_probs=26.6

Q ss_pred             EEEE--eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDY--RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~--~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ||.+  +...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        62 Rfs~~~~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~   95 (142)
T 2ol3_A           62 HYSLNFQKPKSSIGLIITATQIE-DSAVYFCAMRG   95 (142)
T ss_dssp             TEEECCBGGGTBCCEEECSCCTT-TCEEEEEEEEC
T ss_pred             CEEEEecCCCCEEEEEECCCChh-hCEEEEEEEEc
Confidence            4544  44567789999999999 99999999986

>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C

Probab=97.79  E-value=3.5e-05  Score=42.58  Aligned_cols=33  Identities=12%  Similarity=0.243  Sum_probs=26.3

Q ss_pred             EEEEe-CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYR-PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~-~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      |+.+. ...+.++|+|.+++.+ |+|.|.|.+...
T Consensus        63 R~~~~~~~~~~~sL~I~~v~~~-DsG~Y~C~~~~~   96 (121)
T 2oi9_C           63 GYKASRPSQENFSLTLESATPS-QTSVYFCASGGG   96 (121)
T ss_dssp             TEEEECCSSSEEEEEESSCCGG-GCEEEEEEEESS
T ss_pred             CeEEEcCCCCEEEEEECCCCHH-HCEEEEEEEccC
Confidence            45443 3445789999999999 999999999863

>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K

Probab=97.78  E-value=4.1e-05  Score=43.27  Aligned_cols=28  Identities=14%  Similarity=0.223  Sum_probs=23.4

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        73 ~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~  100 (137)
T 1rjc_A           73 DNAKNTLYLQMNSLKPE-DTAMYYCAADT  100 (137)
T ss_dssp             EC--CEEEEEECSCCGG-GCEEEEEEECC
T ss_pred             cCCCCEEEEEECCCCHH-HCEEEEEEEEc
Confidence            34577899999999999 99999999876

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=97.78  E-value=4.7e-05  Score=39.53  Aligned_cols=37  Identities=11%  Similarity=0.294  Sum_probs=27.2

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ...|.|.+++.+ |+|.|+|.+.+..+  ...+..+.|.|
T Consensus        49 ~~~L~i~~v~~~-d~G~Y~C~a~n~~g--~~~s~~~~l~V   85 (91)
T 3bfo_A           49 KKLYMVPYVDLE-HQGTYWCHVYNDRD--SQDSKKVEIII   85 (91)
T ss_dssp             SSEEEESSCCGG-GCEEEEEEEECSSC--EEECCCEEEEE
T ss_pred             CCeEEECCCCHH-hCEEEEEEEEcCCC--CEEeeeEEEEE
Confidence            347999999999 99999999998532  22334455555

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=97.77  E-value=2.6e-05  Score=42.22  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=26.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        21 ~~~~v~~G~~~~l~C~~~-G~P~p~v~W~k~   50 (107)
T 3knb_B           21 RPVRVVSGAEAELKCVVL-GEPPPVVVWEKG   50 (107)
T ss_dssp             CCEEEETTSCEEEEEEEE-EESCCEEEEEET
T ss_pred             CcEEEeCCCcEEEEEEEE-EecCCEEEEEEC
Confidence            557889999999999985 899999999975

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.77  E-value=2.6e-05  Score=47.70  Aligned_cols=48  Identities=17%  Similarity=0.133  Sum_probs=33.3

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      |+......+.++|+|.+++.+ |+|.|+|.+.+..  .........|.|..
T Consensus       198 r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~~~~~~--~~~fg~gt~L~V~~  245 (256)
T 3umt_A          198 RFSGSRSGSDYSLTISSLESE-DFVDYYCLQYASS--PPTFGGGTKLEIKR  245 (256)
T ss_dssp             TEEEEEETTEEEEEECSCCGG-GCSEEEEEECSSS--SCEECCCEEEEEC-
T ss_pred             CEEEecCCCEEEEEECCCChh-HCEEEEEEEeeCC--CcEECCCEEEEEEC
Confidence            344444456778999999999 9999999998742  23334456677753

>2vyr_E Human single domain antibody; zinc, complex, nucleus, human MDM4, immune system, zinc-finger, polymorphism, metal-binding; 2.00A {Homo sapiens} PDB: 1igm_H 2a9n_H* 2a9m_H

Probab=97.77  E-value=5e-05  Score=43.78  Aligned_cols=29  Identities=14%  Similarity=0.145  Sum_probs=25.1

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+...+.++|+|++++.+ |+|.|.|.+..
T Consensus        72 ~~~~~~~~sL~I~~l~~~-Dsg~Y~C~~~~  100 (153)
T 2vyr_E           72 RDNSKNTLYLQMNSLRTE-DTAVYYCAKPW  100 (153)
T ss_dssp             EETTTTEEEEEECSCCGG-GCEEEEEEECS
T ss_pred             EcCCCCEEEEEECcCCHH-HCEEEEEEEEe
Confidence            344577899999999999 99999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.77  E-value=3.2e-05  Score=51.07  Aligned_cols=40  Identities=18%  Similarity=0.311  Sum_probs=29.9

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP   60 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~   60 (98)
                      +|+|.+++.+ |+|.|+|.|.+.   .+..+..+.+.|..+|.+
T Consensus       398 ~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~~~v~~~~~~  437 (440)
T 3zyj_A          398 TLNFTNVTVQ-DTGMYTCMVSNS---VGNTTASATLNVTGTHHH  437 (440)
T ss_dssp             CEEESSCCST-TCEEEEEEEECS---SCEEEEEEEEEEC-----
T ss_pred             eEEEccCChh-hCEEEEEEEEcC---CCcEEEEEEEEEeccccc
Confidence            5999999999 999999999995   466677777777655543

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.76  E-value=1e-05  Score=44.01  Aligned_cols=39  Identities=15%  Similarity=0.197  Sum_probs=28.9

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ   59 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~   59 (98)
                      .+..+|+|.+++.+ |+|.|+|.+.       .....+.|.|..+|.
T Consensus        67 ~~~~~L~I~~v~~~-D~G~Y~C~~g-------~~~~~~~L~V~~~p~  105 (115)
T 2cr6_A           67 GGYHVLTLRQLALK-DSGTIYFEAG-------DQRASAALRVTEKPS  105 (115)
T ss_dssp             TTBCCBEECSCCTT-TCEEEEEEET-------TEECCEEEEEECCSS
T ss_pred             CCEEEEEEcCCChh-hCEEEEEEEC-------CeeEEEEEEEECCCc
Confidence            45567999999999 9999999932       223346788876554

>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus, canine, feline, FAB footprint, immune system; 12.50A {Mus musculus}

Probab=97.75  E-value=5.9e-05  Score=41.51  Aligned_cols=28  Identities=21%  Similarity=0.341  Sum_probs=24.6

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        73 ~~~~~~~~L~I~~~~~~-Dsg~Y~C~~~~  100 (120)
T 3iy0_H           73 AAAGGTAYMGLGGLSSE-DSGVYFCARRG  100 (120)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEES
T ss_pred             ecCCCEEEEEECCCChH-HCEEEEEEEEe
Confidence            34567899999999999 99999999875

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=96.94  E-value=3.9e-06  Score=45.50  Aligned_cols=27  Identities=19%  Similarity=0.336  Sum_probs=23.8

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        67 ~~~~~~L~I~~v~~~-DsG~Y~C~~~~~   93 (110)
T 1u3h_A           67 REKKLSLHIADSQPG-DSATYFCAASAN   93 (110)
Confidence            556789999999999 999999999863

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=97.74  E-value=3.2e-05  Score=41.88  Aligned_cols=40  Identities=18%  Similarity=0.220  Sum_probs=28.6

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ...|.|.+++.+ |+|.|.|.+.+........+..+.|.|.
T Consensus        59 ~~~l~i~~v~~~-dsG~Y~C~~~~~~~~~~~~S~~l~L~V~   98 (108)
T 4hwn_A           59 SSEFQIPTASED-HSGSYWCEAATEDNQVWKQSPQLEIRVQ   98 (108)
T ss_dssp             CCEEEESSCCGG-GCEEEEEEEECTTSSSEEECCCEEECCB
T ss_pred             ccEEEeCccCcc-cCeEEEEEEEeCCCceeccCCCEEEEEE
Confidence            346999999999 9999999999753222344555566554

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=97.74  E-value=3e-05  Score=40.74  Aligned_cols=31  Identities=16%  Similarity=0.320  Sum_probs=26.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+..+.|.+.+.|+++
T Consensus        18 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~   48 (98)
T 1gl4_B           18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRL   48 (98)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEG
T ss_pred             CCeEEecCCCEEEEEeCCCCCCCcEEEEEeC
Confidence            4457899999999999875688999999985

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=97.73  E-value=3.8e-05  Score=46.30  Aligned_cols=36  Identities=22%  Similarity=0.369  Sum_probs=26.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTV   52 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l   52 (98)
                      ..|.|.+++.+ |+|.|+|.+.|..+........+.|
T Consensus       213 ~~L~i~~v~~~-D~G~Y~C~a~N~~g~~g~~~~~~~l  248 (250)
T 2fbo_J          213 RNLVIRAAKIT-DAGRVWCELATGQGELDADRSSTIL  248 (250)
T ss_dssp             TEEEECSCCGG-GCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred             cEEEEecCCcc-cCEEEEEEecCCccccCccceeEEE
Confidence            57999999999 9999999999954433344444443

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=97.73  E-value=5.6e-05  Score=40.56  Aligned_cols=31  Identities=16%  Similarity=0.175  Sum_probs=25.5

Q ss_pred             CCCceecCCCcEEEEEEcCCCCCC---CeEEEEec
Q psy5866          66 GANPVATEGRAIELVCSTSGGSPD---PQISVTLQ   97 (98)
Q Consensus        66 ~~~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~   97 (98)
                      .....+.+|+.+.|.|.+. |.|.   |.+.|+++
T Consensus        11 p~~~~v~~G~~v~L~C~~~-g~p~~~~p~v~W~k~   44 (108)
T 3cx2_A           11 PQDGEVTVGGSITFSARVA-GASLLKPPVVKWFKG   44 (108)
T ss_dssp             CCCEEEETTCCEEEEEEEE-CC-CCSCCEEEEEET
T ss_pred             CCcEEEeCCCCEEEEEEEC-CCccCCCcEEEEccC
Confidence            3567899999999999986 7787   99999985

>1zvy_A Immunoglobulin heavy chain antibody variable DOMA; beta sandwich, immunoglobulin fold, protein protein heteroco alpha-beta orthogonal bundle, hydrolase-immune system compl; 1.63A {Camelus dromedarius} SCOP: b.1.1.1

Probab=97.72  E-value=3.7e-05  Score=43.43  Aligned_cols=28  Identities=14%  Similarity=0.198  Sum_probs=24.7

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+.+
T Consensus        73 ~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~  100 (136)
T 1zvy_A           73 DKAKNMAYLRMDSVKSE-DTAIYTCGATR  100 (136)
T ss_dssp             EGGGTEEEEEECSCCGG-GCEEEEEEECS
T ss_pred             cCCCCEEEEEECCCChh-HCEEEEEEEEe
Confidence            34577899999999999 99999999876

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=97.72  E-value=0.00011  Score=42.08  Aligned_cols=43  Identities=26%  Similarity=0.221  Sum_probs=31.1

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +...+.++|+|.+++.+ |+|.|.|.+....  .........|.|.
T Consensus        76 ~~~~~~~sL~I~~l~~~-Dsg~Y~C~~~~~~--~~~fG~GT~L~V~  118 (150)
T 3dmm_D           76 SSDSRRPFLSIMNVKPE-DSDFYFCATVGSP--KMVFGTGTKLTVV  118 (150)
T ss_dssp             STTSSSCEEEESSCCGG-GCEEEEEEEECSS--CEEECCCEEEEEE
T ss_pred             cCCCCEEEEEECCCChh-hCEEEEEEEecCC--cceECCCEEEEEe
Confidence            36677899999999999 9999999997531  2222233456665

>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A

Probab=97.71  E-value=6.9e-05  Score=42.31  Aligned_cols=29  Identities=17%  Similarity=0.203  Sum_probs=25.0

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        76 ~~~~~~~~sL~I~~~~~~-Dsg~Y~C~~~~  104 (136)
T 3tpk_A           76 QDNAKNTVYLQMNNLKPE-DTAMYYCAAAP  104 (136)
T ss_dssp             EETTTTEEEEEECSCCGG-GCEEEEEEEES
T ss_pred             EcCCCCEEEEEECCCChh-hCEEEEEEEEe
Confidence            344567899999999999 99999999876

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=97.71  E-value=5.4e-05  Score=43.86  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=28.5

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeee-EeeEEEEEECCC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLH-SQVYTVTVLTPP   58 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~-~~~~~l~v~~~~   58 (98)
                      +|.|.+++.+ |+|.|+|.+.+.   .+.. +..+.|.|..+|
T Consensus       154 ~L~i~~~~~~-d~G~Y~C~a~n~---~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          154 SLRIHNVQKE-DAGQYRCVAKNS---LGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             CEEESSCCGG-GCEEEEEEEEET---TEEEECCCEEEEEEC--
T ss_pred             cEEEecCChh-hCEEEEEEEEcC---CCcEEEEEEEEEEEeCC
Confidence            5999999999 999999999995   3333 445777776543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=97.71  E-value=2.4e-05  Score=47.96  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=23.8

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..+.++|+|.+++.+ |+|.|+|.+.+.
T Consensus       205 ~~~~~~L~I~~v~~~-D~G~Y~C~a~n~  231 (257)
T 1f3r_B          205 SGTDYTLTISSLQPE-DVATYFCYQYNN  231 (257)
T ss_dssp             EBTEEEEEECSCCGG-GCSEEEEEEESS
T ss_pred             CCCEEEEEECCCChh-hCEEEEEEEeCC
Confidence            345678999999999 999999999984

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=97.70  E-value=4.7e-05  Score=39.64  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=26.2

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        10 ~~~~v~~G~~~~l~C~~~-g~P~p~i~W~k~   39 (93)
T 1wit_A           10 RKIKIKAGFTHNLEVDFI-GAPDPTATWTVG   39 (93)
T ss_dssp             CEEEECTTBCCEEEEEEE-CCSSCEEEEECS
T ss_pred             CceEEeCCCEEEEEEEEE-EcCCCEEEEEEC
Confidence            456788999999999986 899999999975

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=97.70  E-value=5.1e-05  Score=44.57  Aligned_cols=41  Identities=22%  Similarity=0.345  Sum_probs=29.4

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQ   59 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~   59 (98)
                      .+|.|.+++.+ |+|.|+|.+.|..+  ...+..+.|.|..++.
T Consensus       163 ~~L~i~~v~~~-d~G~Y~C~a~N~~g--~~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          163 SILRIDPIKRE-DAGEYQCEISNPVS--VRRSNSIKLDIIFDPH  203 (208)
T ss_dssp             TEEEESSCCGG-GCEEEEEEEECTTC--CEECCCEEECCC----
T ss_pred             CEEEEeccCHH-hCeEEEEEEecCCC--cccCCceeeeEEeCCc
Confidence            46999999999 99999999999632  3445567777665544

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=97.70  E-value=2.4e-05  Score=42.55  Aligned_cols=32  Identities=13%  Similarity=0.095  Sum_probs=25.0

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .|+......++ +|+|.+++.+ |+|.|.|.+..
T Consensus        64 ~Rf~~~~~~~~-~L~I~~~~~~-Dsg~Y~C~~~~   95 (112)
T 1fo0_B           64 ADYLATRVTDT-ELRLQVANMS-QGRTLYCTCSA   95 (112)
T ss_dssp             EEEEEEEEETT-EEEEEEESCC-SCEEEEEEEES
T ss_pred             CCEEEEcCCCC-eEEEcCCCHh-HCEEEEEEEEc
Confidence            45555433334 8999999999 99999999975

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.69  E-value=4.5e-05  Score=46.85  Aligned_cols=42  Identities=17%  Similarity=0.150  Sum_probs=30.7

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      ....++|+|.+++.+ |+|.|+|.+.+..  .........|.|..
T Consensus       192 ~~~~~~L~I~~v~~~-DsG~Y~C~a~~~~--~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          192 SGTDFTLKISRVEAE-DLGVYYCFQGSHV--PYTFGGGTKLEIKR  233 (256)
T ss_dssp             ETTEEEEEESSCCGG-GCEEEEEEECSSS--SCEECCCEEEEECC
T ss_pred             cCCEEEEEECCCChH-HCEEEEEEEccCC--ceEECCCEEEEEEC
Confidence            445678999999999 9999999998732  23334445677753

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=97.69  E-value=0.0001  Score=40.55  Aligned_cols=38  Identities=24%  Similarity=0.393  Sum_probs=29.0

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..+.|++.+|..+ |+|.|+|.|.+..  ....+....|.|
T Consensus        77 s~fiL~f~~V~~s-DsG~YrCsAn~~~--g~ieSHs~ti~V  114 (122)
T 1xau_A           77 PVFVLHFKPIHLS-DNGSYSCSTNFNS--QVINSHSVTIHV  114 (122)
T ss_dssp             CEEEEEETTCCGG-GCEEEEEEEEETT--EEEECCCEEEEE
T ss_pred             eeEEEEEeeEEEc-CCccEEEEeeCCC--CceeeeEEEEEE
Confidence            4678999999999 9999999999952  234444455555

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=97.68  E-value=0.00011  Score=43.52  Aligned_cols=40  Identities=25%  Similarity=0.282  Sum_probs=29.3

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEe-eEEEEEECCCCC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQ-VYTVTVLTPPQP   60 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~-~~~l~v~~~~~~   60 (98)
                      .|.|.+++.+ |+|.|+|.+.|.   .+.... .+.|.|......
T Consensus       164 ~L~i~~v~~~-d~G~Y~C~a~N~---~G~~~s~~~~l~V~~~~~~  204 (212)
T 2yd1_A          164 FLQIENSREE-DQGKYECVAENS---MGTEHSKATNLYVKVRRVG  204 (212)
T ss_dssp             EEEECSCCGG-GCEEEEEEEEET---TEEEECCCEEEEEEC---C
T ss_pred             eEEEccCChh-hCEEEEEEeecC---CCceeEEEEEEEEEecccc
Confidence            6999999999 999999999995   344433 378888755443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=97.68  E-value=0.0001  Score=43.28  Aligned_cols=39  Identities=31%  Similarity=0.428  Sum_probs=28.7

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeee-EeeEEEEEECCCC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLH-SQVYTVTVLTPPQ   59 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~-~~~~~l~v~~~~~   59 (98)
                      .|.|.+++.+ |+|.|+|.+.|.   .+.. +..+.|.|..+|.
T Consensus       166 ~L~i~~~~~~-d~G~Y~C~a~N~---~g~~~s~~~~l~V~~~P~  205 (212)
T 2v9r_A          166 KLMITYTRKS-DAGKYVCVGTNM---VGERESEVAELTVLERPS  205 (212)
T ss_dssp             EEEESSCCGG-GCEEEEEEEEET---TEEEECCCEEEEEEC---
T ss_pred             eEEEeeCCHh-hCeeEEEEEecc---cCceecceEEEEEEeCch
Confidence            6999999999 999999999995   3332 3347888876554

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=97.66  E-value=3.2e-05  Score=42.27  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=23.2

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .+.++|+|.+++.+ |+|.|.|.+.+.
T Consensus        75 ~~~~~L~I~~v~~~-DsG~Y~C~~~~~  100 (120)
T 2yz1_A           75 NMDFSIRISNVTPE-DAGTYYCVKFQK  100 (120)
T ss_dssp             TTBCCEEECSCCGG-GCEEEEEEEEEC
T ss_pred             CCeEEEEECCCCHH-HCEEEEEEEEcC
Confidence            45678999999999 999999999874

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=97.66  E-value=0.00016  Score=42.03  Aligned_cols=36  Identities=25%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..|.|.++..+ |+|.|+|.+.|.   .+..+..+.|.|.
T Consensus       165 ~~L~i~~v~~~-d~G~Y~C~a~n~---~g~~~~~~~l~V~  200 (201)
T 3s97_C          165 AVLKIFNIQLE-DEGIYECEAENI---RGKDKHQARIYVQ  200 (201)
T ss_dssp             TEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             CEEEEccCChh-hCEEEEEEEEec---CCceeeeEEEEEe
Confidence            47999999999 999999999995   4555666666664

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=97.65  E-value=5.5e-05  Score=46.23  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=26.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ++........++|+|.+++.+ |+|.|.|.+.+.
T Consensus       210 r~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~  242 (256)
T 3juy_B          210 RFSGSGSGTDFTLTITRVEPE-DFALYYCQVYGA  242 (256)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCSEEEEEECCS
T ss_pred             cEEEEccCCEEEEEECCCCHh-HCEEEEEEEeeC
Confidence            334334456778999999999 999999999874

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=97.65  E-value=0.00021  Score=39.59  Aligned_cols=26  Identities=15%  Similarity=0.304  Sum_probs=23.6

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .+.++|+|.+++.+ |+|.|.|.+...
T Consensus        76 ~~~~sL~I~~~~~~-Dsg~Y~C~~~~~  101 (125)
T 3r8b_B           76 QENFSLILELATPS-QTSVYFCASGGG  101 (125)
T ss_dssp             TTEEEEEETTCCGG-GCEEEEEEEEET
T ss_pred             CCEEEEEECCCChh-hCEEEEEEEcCC
Confidence            56899999999999 999999998763

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=97.65  E-value=8.9e-05  Score=45.17  Aligned_cols=29  Identities=14%  Similarity=0.174  Sum_probs=25.0

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +...+.++|+|.+++.+ |+|.|+|.+.+.
T Consensus       207 ~~~~~~~~L~I~~v~~~-DsG~Y~C~~~~~  235 (256)
T 3ux9_B          207 DNSKNTLYLQMNSLRAE-DTAVYYCARYID  235 (256)
T ss_dssp             ETTTTEEEEEECSCCGG-GCEEEEEEEEET
T ss_pred             cCCCCEEEEEECCCChh-hCEEEEEEEEcC
Confidence            34466788999999999 999999999984

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.65  E-value=8.2e-05  Score=39.11  Aligned_cols=38  Identities=32%  Similarity=0.417  Sum_probs=29.5

Q ss_pred             CCCEE-eCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          59 QPPKI-SPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        59 ~~p~i-~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+|.+ .......+.+|+.+.|.|.+. |.|.+.+.|+++
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~-g~p~p~v~W~~~   45 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKAT-GDPLPVISWLKE   45 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEE-CSSCCEEEEEES
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEE-EcCCCEEEEEEC
Confidence            34555 223456888999999999986 789999999975

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=97.64  E-value=3.9e-05  Score=40.88  Aligned_cols=30  Identities=37%  Similarity=0.629  Sum_probs=22.8

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+. |.|.+.+.|+++
T Consensus        18 ~~~~v~~G~~v~l~C~~~-g~p~p~i~W~~~   47 (108)
T 3kvq_A           18 ENQTTSIGESIEVSCTAS-GNPPPQIMWFKD   47 (108)
T ss_dssp             CCEEEETTCCEEEECBCC-----CCEEEEES
T ss_pred             CCeEEeCCCeEEEEEECc-CcCCCeEEEEEC
Confidence            567889999999999985 788999999975

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.64  E-value=5.1e-05  Score=44.42  Aligned_cols=26  Identities=8%  Similarity=0.185  Sum_probs=23.0

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .....|.|.+++.+ |+|.|+|.+.+.
T Consensus       146 ~~~~~L~I~~v~~~-d~G~Y~C~a~n~  171 (188)
T 1oll_A          146 KVQAEFPLGPVTTA-HRGTYRCFGSYN  171 (188)
T ss_dssp             SSEEEEEEEECCGG-GCEEEEEECEEE
T ss_pred             CceeEEEECCCCcC-CCcEEEEEEEcC
Confidence            45678999999999 999999999885

>3k81_A Single strand antibody VHH domain; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Lama glama}

Probab=97.63  E-value=6.4e-05  Score=42.08  Aligned_cols=29  Identities=14%  Similarity=0.162  Sum_probs=24.7

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        71 ~~~~~~~~sL~I~~lq~~-Dsg~Y~Ca~~~   99 (127)
T 3k81_A           71 RDNAKNVMYLQMNSLKPE-DTAVYYCNANL   99 (127)
T ss_dssp             EETTTTEEEEEEESBCTT-TCEEEEEECCC
T ss_pred             EcCCCCEEEEEECCCChh-hCEEEEEEEee
Confidence            344567899999999999 99999998864

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.63  E-value=5.9e-05  Score=46.91  Aligned_cols=48  Identities=15%  Similarity=0.176  Sum_probs=32.2

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP   57 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~   57 (98)
                      +......+.++|+|.+++.+ |+|.|+|.+.+..  .........|.|...
T Consensus       222 ~~~~~~~~~~~L~I~~v~~~-DsG~Y~C~a~~~~--~~~fg~gt~l~V~~~  269 (282)
T 1qok_A          222 FSGSGSGTSYSLTISRMEAE-DAATYYCQQRSSY--PLTFGAGTKLELKRA  269 (282)
T ss_dssp             EEEEEETTEEEEEESSCCGG-GCEEEEEEECSSS--SCEECCCEEEEEC--
T ss_pred             eEEecCCCEEEEEEccCChh-HCEEEEEEEeeCC--CceEeCCEEEEEecc
Confidence            33333456778999999999 9999999998631  233344466777533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.79
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.74
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.73
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.67
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.66
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.59
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.59
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.59
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.58
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.57
d2avga1	110	Cardiac myosin binding protein C, different domain	98.56
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.54
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.54
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.52
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.51
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.51
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.5
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.5
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.49
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.48
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.46
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.45
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.44
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.43
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.42
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.39
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.39
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.39
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.39
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.38
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.36
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.36
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.33
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.33
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.33
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.33
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.31
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.3
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.28
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.28
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.27
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.25
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.23
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.21
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.2
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.2
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.2
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.18
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.16
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.15
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.15
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.13
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.11
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.08
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.08
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.08
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.08
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.05
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.04
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	97.99
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.97
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	97.97
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.96
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.96
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.95
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	97.95
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.93
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.92
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	97.91
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.91
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.9
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	97.87
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	97.87
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.87
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.87
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.84
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	97.84
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.84
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.83
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.82
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	97.81
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.79
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.78
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	97.77
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.77
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.77
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.76
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.74
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.73
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	97.72
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.71
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.71
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.7
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	97.7
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.66
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.65
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.63
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	97.63
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.62
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.62
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	97.61
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.6
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.6
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	97.6
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.6
d2avga1	110	Cardiac myosin binding protein C, different domain	97.6
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.59
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.59
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.59
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.59
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.59
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	97.56
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	97.56
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.55
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.55
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.55
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	97.54
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.54
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	97.54
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.52
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.51
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.51
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.51
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.5
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.5
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.5
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.49
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.48
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.48
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	97.47
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.47
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.47
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.46
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.46
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.46
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	97.45
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.45
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.45
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.45
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.45
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.44
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.43
d1gxea_	130	Cardiac myosin binding protein C, different domain	97.43
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.43
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.43
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.42
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.41
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.41
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.37
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.35
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.35
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	97.34
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.34
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	97.32
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.3
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.3
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.3
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.3
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	97.29
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.29
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.28
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.28
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.27
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.27
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.26
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	97.24
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.21
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	97.18
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.18
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.17
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.16
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.15
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.14
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.12
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.11
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.11
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.09
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.07
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.04
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.0
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.0
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	96.98
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.98
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	96.94
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	96.94
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.93
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.93
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.86
d1pd6a_	94	Cardiac myosin binding protein C, different domain	96.84
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	96.84
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.83
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	96.8
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	96.78
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.75
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	96.75
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.73
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.72
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	96.7
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.66
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	96.65
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.65
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.61
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	96.6
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	96.58
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.54
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.52
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.51
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	96.51
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.5
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.49
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	96.49
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.48
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.43
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	96.43
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.42
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.41
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.41
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	96.41
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.39
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.38
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.37
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.37
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.36
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.36
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.35
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.35
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.34
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.34
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	96.34
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.34
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	96.33
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.32
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.32
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.31
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.29
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.29
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	96.28
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.27
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	96.26
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.26
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.26
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	96.23
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.23
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.23
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.22
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.22
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.2
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.19
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.19
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	96.19
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.19
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.19
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	96.18
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.18
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.16
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.16
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.15
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	96.14
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.14
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	96.1
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.09
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.07
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.07
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.05
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.03
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	96.03
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.03
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.02
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.02
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.01
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.0
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	95.98
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	95.96
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.94
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	95.93
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	95.93
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	95.92
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	95.92
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	95.89
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	95.89
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	95.84
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	95.83
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	95.79
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	95.79
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	95.74
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	95.74
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	95.73
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	95.71
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	95.66
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	95.66
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	95.65
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	95.65
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	95.65
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	95.64
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	95.63
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.6
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	95.6
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	95.57
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	95.56
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	95.55
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	95.53
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	95.52
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.51
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.49
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	95.47
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	95.46
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	95.46
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	95.46
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	95.45
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	95.43
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	95.41
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.38
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.38
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	95.37
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.34
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	95.23
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.22
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	95.21
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	95.2
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	95.2
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	95.18
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	95.14
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	95.11
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	95.09
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	95.08
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.02
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	95.02
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	95.0
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	94.99
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	94.85
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	94.85
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	94.82
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	94.82
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	94.8
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	94.77
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	94.76
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	94.76
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.75
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	94.75
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	94.74
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	94.73
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	94.73
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	94.72
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	94.7
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	94.69
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	94.68
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	94.68
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	94.66
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.65
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	94.65
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	94.62
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.59
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	94.58
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.57
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	94.57
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	94.56
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	94.53
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	94.53
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.52
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	94.48
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	94.47
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	94.46
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	94.46
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	94.45
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.44
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	94.42
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	94.41
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	94.41
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	94.39
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	94.37
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	94.36
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	94.35
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	94.34
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	94.34
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	94.33
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.3
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	94.26
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.26
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	94.26
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	94.25
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	94.23
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	94.22
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	94.22
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	94.21
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.21
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	94.2
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	94.2
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.2
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	94.13
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	94.1
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	94.07
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	94.06
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	94.03
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	94.03
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	94.02
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	94.02
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	94.01
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	94.01
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	93.99
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.94
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	93.93
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	93.85
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	93.83
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	93.81
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	93.79
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	93.78
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	93.78
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	93.78
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	93.75
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	93.71
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.71
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	93.71
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	93.66
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	93.64
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	93.63
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	93.61
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	93.54
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	93.5
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.42
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	93.41
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	93.36
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	93.32
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	93.32
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	93.18
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	93.13
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	93.12
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	92.91
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	92.89
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	92.84
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	92.78
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	92.71
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	92.51
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	92.48
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	92.28
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	92.28
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	92.08
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	92.06
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	91.67
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	91.64
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	91.53
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	91.32
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	91.19
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	91.13
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	91.12
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	90.8
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	90.79
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	90.72
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	90.45
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	89.63
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	89.44
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	89.23
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	89.12
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	88.9
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	87.74
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	87.72
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	87.63
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	86.6
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	85.32
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	84.28
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	83.81
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	83.8
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	83.58
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	83.41
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	82.54

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=8.7e-10  Score=58.33  Aligned_cols=56  Identities=20%  Similarity=0.258  Sum_probs=43.8

Q ss_pred             ceeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCE
Q psy5866           3 KVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPK   62 (98)
Q Consensus         3 ~~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~   62 (98)
                      .+.++.+....+..+|.|.++..+ |+|.|+|.+.|.   .+..+..+.|.|...|.+|.
T Consensus        43 ~~~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~~~P~pP~   98 (101)
T d2cqva1          43 ESEHMKVENSENGSKLTILAARQE-HCGCYTLLVENK---LGSRQAQVNLTVVDKPDPPA   98 (101)
T ss_dssp             CSSSEEEEECSSEEEEEETTCCTT-TCEEEEEEEECS---SCEEECCEEEEEECSCSCCC
T ss_pred             cCCcEEEEEecceeEEEEeeCCcc-cCEEEEEEEEEC---CCEEEEEEEEEEEecCCCcC
Confidence            344555555566778999999999 999999999985   45667778999988777663

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.79  E-value=4.2e-09  Score=55.18  Aligned_cols=50  Identities=18%  Similarity=0.251  Sum_probs=38.3

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      .++.+....+.+.|.|.++... |+|.|+|.+.|.   .+..+..+.|.|...+
T Consensus        46 ~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~~~~   95 (97)
T d1koaa1          46 VKYMKRYNGNDYGLTINRVKGD-DKGEYTVRAKNS---YGTKEEIVFLNVTRHS   95 (97)
T ss_dssp             TTBBCCCSTTEEEEEESCCCSG-GGSCEEEEEEET---TEEEEEEECCEEECSC
T ss_pred             eEEEEEecCCeeEEEeCCCcee-cCEEEEEEEEEC---CCEEEEEEEEEEeecC
Confidence            3444455667888999999999 999999999995   4556667778876443

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=8e-09  Score=56.16  Aligned_cols=47  Identities=19%  Similarity=0.225  Sum_probs=36.5

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .++.+....+...|.|.+++.+ |+|.|+|.|.|.   .+..+..+.|.|+
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNP---VGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTT-TCEEEEEEEECS---SCEEEEEEEEEEC
T ss_pred             ceEEEEECCCEEEEEECcCChh-cCEEEEEEEEEC---CCEEEEEEEEEEE
Confidence            3445555567788999999999 999999999995   4556666777764

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=2.5e-08  Score=54.15  Aligned_cols=42  Identities=24%  Similarity=0.462  Sum_probs=34.8

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTP   57 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~   57 (98)
                      ..++++|+|.+++.+ |+|.|+|.+.+.   ....+..+.|.|..|
T Consensus        77 ~~~~~sL~I~~v~~~-D~G~Y~C~v~~~---~~~~~~~v~L~V~~P  118 (126)
T d1pkoa_          77 GEGKVALRIQNVRFS-DEGGYTCFFRDH---SYQEEAAVELKVEDP  118 (126)
T ss_dssp             GGTEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEECT
T ss_pred             cCCeEEEEEEEEchh-HCeEEEEEEEEC---CCEEEEEEEEEEeCC
Confidence            456899999999999 999999999884   456667778888754

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3.1e-08  Score=52.99  Aligned_cols=42  Identities=14%  Similarity=0.287  Sum_probs=33.7

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      .+.+.|.|.+++.. |+|.|+|.+.|.   .+..+..+.|.|..++
T Consensus        65 ~~~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          65 VYTFEMQIIKAKDN-FAGNYRCEVTYK---DKFDSCSFDLEVHEST  106 (113)
T ss_dssp             EEEEEEEECSCCTT-SCEEEEEEEECS---SCEEEECCEEEEECCC
T ss_pred             cCEEEEEEccCCHH-HCeEEEEEEEeC---CCEEEEEEEEEEEcCC
Confidence            34567999999999 999999999985   4556667888887544

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.5e-08  Score=51.80  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=34.0

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQP   60 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~   60 (98)
                      ...|.|.+++.. |+|.|+|.|.|.   .+..+..+.+.|+.+|.+
T Consensus        61 ~~~L~i~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~v~V~~~P~P  102 (105)
T d1wwca_          61 EGCLLFNKPTHY-NNGNYTLIAKNP---LGTANQTINGHFLKEPFP  102 (105)
T ss_dssp             EEEEEEESCCGG-GCEEEEEEEEET---TEEEEEEEEECCSCCCCC
T ss_pred             eEEEEEeecccc-cceEEEEEEEcC---CCEEEEEEEEEEEeCCCC
Confidence            456999999999 999999999995   566677777877766654

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.2e-07  Score=49.04  Aligned_cols=39  Identities=23%  Similarity=0.289  Sum_probs=32.3

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .+...|+|.+++.+ |+|.|+|.+.+.   ....+..+.|.|+
T Consensus        52 ~~~~~L~i~~v~~~-D~G~Y~C~Asn~---~g~~~~s~~l~Vy   90 (90)
T d1gsma1          52 TGRSVLTVRNASLS-AAGTRVCVGSCG---GRTFQHTVQLLVY   90 (90)
T ss_dssp             SSEEEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             CceeeEEcCccChh-hCCcEEEEEEeC---CCcEEEEEEEEEC
Confidence            34567999999999 999999999994   5667777787774

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.2e-08  Score=52.88  Aligned_cols=41  Identities=24%  Similarity=0.515  Sum_probs=33.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      ..+.++|+|.+++.+ |+|.|.|.+.+.   ....+..+.|.|++
T Consensus        84 ~~~~~sL~I~~v~~~-D~G~Y~C~v~~~---~~~~~~~~~L~V~V  124 (124)
T d1eaja_          84 KSGDASINVTNLQLS-DIGTYQCKVKKA---PGVANKKIHLVVLV  124 (124)
T ss_dssp             GGTBCCEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEC
T ss_pred             CCCEEEEEEcccEEc-cCEEEEEEEEEC---CCeEEeEEEEEEEC
Confidence            346788999999999 999999999874   45666777888763

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.59  E-value=5.3e-08  Score=50.42  Aligned_cols=43  Identities=16%  Similarity=0.291  Sum_probs=33.2

Q ss_pred             EEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           8 DYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         8 ~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ......+...|.|.++..+ |+|.|+|.+.|.   .+..+..+.|.|
T Consensus        50 ~~~~~~~~~~L~I~~~~~~-D~G~Y~c~a~N~---~G~~~~~~~l~V   92 (93)
T d1wiua_          50 LVDAKSSTTSIFFPSAKRA-DSGNYKLKVKNE---LGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEETTEEEEECTTBCGG-GCEEEEEEEEET---TEEEEEEEEEEE
T ss_pred             eecccccceeecccccccc-ccEEEEEEEEEC---CCEEEEEEEEEE
Confidence            3344456778999999999 999999999995   456666666665

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.58  E-value=2.1e-07  Score=48.82  Aligned_cols=48  Identities=17%  Similarity=0.251  Sum_probs=36.1

Q ss_pred             eeEEEEe-CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           4 VEIIDYR-PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         4 ~~~~~~~-~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +.++.+. ...+.++|.|.+++.. |+|.|+|.+.|.   .+..+..+.|.|.
T Consensus        52 ~~~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~L~V~  100 (102)
T d1fhga_          52 SRHFQIDYDEEGNCSLTISEVCGD-DDAKYTCKAVNS---LGEATCTAELLVE  100 (102)
T ss_dssp             SSSEEEEECTTCEEEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             eeeEeEEEecCceeeeEecCCCHH-hCEEEEEEEEEC---CcEEEEEEEEEEE
Confidence            3444443 3456788999999999 999999999996   4556666777764

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.8e-07  Score=48.91  Aligned_cols=48  Identities=23%  Similarity=0.398  Sum_probs=34.0

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .+..+...+.++|+|.+++.+ |+|.|.|.+.............+.|.|
T Consensus        60 ~~~~~~~~~~~~L~I~~l~~~-DsG~Y~C~v~~~~~~~~~~~~~~~l~V  107 (108)
T d1hkfa_          60 TIWDDPDAGFFTVTMTDLREE-DSGHYWCRIYRPSDNSVSKSVRFYLVV  107 (108)
T ss_dssp             EEEEETTTTEEEEEECSCCGG-GCEEEEEEEECTTTCCEEEEEEEEEEE
T ss_pred             eeeeeCCCCEEEEEEhhhCCC-CCEEEEEEEecCCCCcEEEeeEEEEEE
Confidence            344567888999999999999 999999998864332233333344443

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.3e-07  Score=50.25  Aligned_cols=40  Identities=18%  Similarity=0.360  Sum_probs=33.3

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      ...+.|.|.+++.. |+|.|+|.+.|.   .+..+..+.|.|..
T Consensus        69 ~~~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~L~V~~  108 (110)
T d2avga1          69 VYLFELHITDAQPA-FTGGYRCEVSTK---DKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEEEEESCCTT-CCEEEEEEEEET---TEEEEEEEEEEEES
T ss_pred             cCEEEEEEeccCHH-HCcEEEEEEEEC---CCeEEEEEEEEEEe
Confidence            34567999999999 999999999995   56777778888863

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.4e-07  Score=47.99  Aligned_cols=39  Identities=21%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ..|+|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|+..|
T Consensus        45 ~~l~i~~v~~~-DsG~Y~C~a~N~---~g~~~~~~~v~V~~~~   83 (84)
T d2nxyb2          45 KTLSVSQLELQ-DSGTWTCTVLQN---QKKVEFKIDIVVLAFQ   83 (84)
T ss_dssp             SEEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEECEECCC
T ss_pred             eeeeeeecccc-cccEEEEEEEeC---CCEEEEEEEEEEEecC
Confidence            46999999999 999999999995   5677777888887544

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=8.3e-08  Score=50.36  Aligned_cols=39  Identities=18%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +++|+|++++.+ |+|.|+|++.+..+ ....+..+.|.|+
T Consensus        59 ngSL~I~nl~~~-DsG~Y~c~v~~~~g-~~~~~~~~~L~V~   97 (98)
T d1hnga1          59 NGDLKIKNLTRD-DSGTYNVTVYSTNG-TRILNKALDLRIL   97 (98)
T ss_dssp             TSCEEESSCCGG-GCEEEEEEEEETTC-CEEEEEEEEEEEE
T ss_pred             CccEEEeCCCHH-HCEEEEEEEEeCCC-CEEEEEEEEEEEE
Confidence            357999999999 99999999998643 3445667778775

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.3e-07  Score=49.74  Aligned_cols=50  Identities=22%  Similarity=0.349  Sum_probs=37.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ..+......+.++|+|.+++.+ |+|.|.|.+...   .......+.|+|+...
T Consensus        63 ~~~~~~~~~~~~sL~I~~l~~~-DsG~Y~C~v~~~---~~~~~~~v~L~V~~~~  112 (116)
T d1xeda_          63 ANLTNFPENGTFVVNIAQLSQD-DSGRYKCGLGIN---SRGLSFDVSLEVLEHH  112 (116)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEESCG---GGCCEEEEEEEEECCC
T ss_pred             ccEeeeCCCCEEEEEEhhhCcC-CCEEEEEEEEcC---CCCceEeEEEEEECCC
Confidence            4456677888999999999999 999999998653   2223335678776443

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.7e-07  Score=47.28  Aligned_cols=42  Identities=17%  Similarity=0.254  Sum_probs=31.1

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCee-eEeeEEEEE
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDL-HSQVYTVTV   54 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~-~~~~~~l~v   54 (98)
                      ........+|.|.++..+ |+|.|+|.+.|.   .+. .+..+.|.|
T Consensus        53 ~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~s~~a~L~V   95 (96)
T d2c9aa1          53 TSSRRFIASFNVVNTTKR-DAGKYRCMIRTE---GGVGISNYAELVV   95 (96)
T ss_dssp             EETTEEEEEEEECSCCGG-GCSEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             EEeecCceEEEECCCCHH-HCeEEEEEEEeC---CCeEEEEEEEEEE
Confidence            344445667999999999 999999999995   333 344466665

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=7.1e-08  Score=51.83  Aligned_cols=44  Identities=25%  Similarity=0.404  Sum_probs=31.1

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +...++++|+|++++.+ |+|.|.|.+.+... .......+.|.|.
T Consensus        75 ~~~~~~~sL~I~~v~~~-DsG~Y~C~v~~~~~-~~~~~~~v~L~V~  118 (119)
T d1neua_          75 DPSWKDGSIVIHNLDYS-DNGTFTCDVKNPPD-IVGKTSQVTLYVF  118 (119)
T ss_dssp             BGGGTBCCEEECSCCGG-GCEEEEEEEEC-----CCEEEEEEEEEE
T ss_pred             ECCCCEEEEEECCCChH-HCEEEEEEEEECCC-cCceEEEEEEEEE
Confidence            45567789999999999 99999999987422 2333445666664

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.50  E-value=5.3e-08  Score=50.25  Aligned_cols=46  Identities=13%  Similarity=0.224  Sum_probs=33.8

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .++.+.......+|.|.++... |+|.|+|.+.|.   .+..+..+.|.|
T Consensus        44 ~~~~~~~~~~~~~L~i~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V   89 (91)
T d1tnna_          44 ARHQVTTTKYKSTFEISSVQAS-DEGNYSVVVENS---EGKQEAEFTLTI   89 (91)
T ss_dssp             SSCEEEECSSEEEEECSSCCSC-CCEEEEEECBCS---SCBCCEEEEEEC
T ss_pred             cceeeeeecceeEEeecCCCHH-HCEEEEEEEEEC---CCEEEEEEEEEE
Confidence            3444555566788999999999 999999999985   333444555655

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.50  E-value=4.5e-07  Score=47.17  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=33.3

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ...+.+.|+|.++... |+|.|+|.+.|.   .+..+..+.|.|.
T Consensus        56 ~~~~~~~L~I~~~~~~-D~G~Y~c~a~N~---~G~~~~~~~L~V~   96 (98)
T d1g1ca_          56 PEDNVCELVIRDVTGE-DSASIMVKAINI---AGETSSHAFLLVQ   96 (98)
T ss_dssp             EETTEEEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             ccceEEEEEeccCccc-cCEEEEEEEEEC---CcEEEEEEEEEEE
Confidence            3456778999999999 999999999995   4566666777775

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4.6e-08  Score=52.06  Aligned_cols=43  Identities=23%  Similarity=0.463  Sum_probs=30.1

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCC--eeeEeeEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQ--DLHSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~--~~~~~~~~l~v~   55 (98)
                      ..++++|+|++++.+ |+|.|.|.+.....+.  ......+.|.|.
T Consensus        65 ~~~~~sL~I~~v~~~-D~G~Y~C~V~~~~~~~~~~~~~~~~~L~V~  109 (110)
T d1ncna_          65 DSDSWTLRLHNLQIK-DKGLYQCIIHHKKPTGMIRIHQMNSELSVL  109 (110)
T ss_dssp             ETTTTEEEECSCCGG-GCEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             cCCeEEEEECCCChh-HCEEEEEEEEecCCCceEEEEcceEEEEEE
Confidence            355678999999999 9999999997643322  223444556554

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.48  E-value=2.5e-07  Score=48.80  Aligned_cols=40  Identities=30%  Similarity=0.404  Sum_probs=31.7

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..+...|+|.++... |+|.|+|.|.|.   .+.....+.|+|+
T Consensus        70 ~~~~~~L~i~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          70 DKEIEVLYIRNVTFE-DAGEYTCLAGNS---IGISFHSAWLTVL  109 (109)
T ss_dssp             TEEEEEEEECSCCGG-GCEEEEEEEECS---SCEEEEEEEEEEC
T ss_pred             cCCcEEEEECCCCHH-HCeEEEEEEEEC---CCEEEEEEEEEEC
Confidence            344578999999999 999999999985   4555666777763

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4.2e-07  Score=46.62  Aligned_cols=39  Identities=13%  Similarity=0.227  Sum_probs=32.3

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .....|.|.+++.+ |+|.|+|.|.|.   ....+..+.|.|+
T Consensus        51 ~~~~~L~I~~v~~~-d~G~Y~C~a~N~---~g~~~~~~~v~V~   89 (90)
T d1vcaa2          51 GTTSTLTMNPVSFG-NEHSYLCTATCE---SRKLEKGIQVEIY   89 (90)
T ss_dssp             TTEEEEEESSCCGG-GCSEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             cCCcEEEEeccccc-ccceEEEEEEeC---CCEEEEEEEEEEE
Confidence            34567999999999 999999999995   5667777788775

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=5.8e-08  Score=51.75  Aligned_cols=44  Identities=27%  Similarity=0.363  Sum_probs=31.1

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      +...++++|+|.+++.+ |+|.|.|++...............|+|
T Consensus        73 ~~~~~~~sL~I~~v~~~-DsG~Y~C~v~~~~~~~~~~~~~~~ltV  116 (118)
T d1qfoa_          73 NMDHKVCNLLLKDLKPE-DSGTYNFRFEISDSNRWLDVKGTTVTV  116 (118)
T ss_dssp             CGGGTBCCEEECSCCGG-GCEEEEEEEECC-CCEEECSSCEEEEE
T ss_pred             eCcCCEEEEEECCCChh-HCEEEEEEEEeCCCCeEEcCCCEEEEE
Confidence            45567899999999999 999999999764322233333455555

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.4e-07  Score=48.85  Aligned_cols=30  Identities=17%  Similarity=0.357  Sum_probs=25.2

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQ   43 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~   43 (98)
                      .++++|+|++++.+ |+|.|.|.+.+...+.
T Consensus        62 ~g~~sL~I~~v~~~-D~G~Y~C~V~~~~~~~   91 (105)
T d1dr9a1          62 TNNLSIVILALRPS-DEGTYECVVLKYEKDA   91 (105)
T ss_dssp             TTTTEEEECSCCGG-GCEEEEEEEEECCTTS
T ss_pred             CCcEEEEECcCChH-HCeEEEEEEEeCCCCC
Confidence            46789999999999 9999999998754433

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=4.1e-07  Score=47.46  Aligned_cols=39  Identities=15%  Similarity=0.286  Sum_probs=32.1

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      +..+|.|.+++.. |+|.|+|.+.|.   .+..+..+.|.|+.
T Consensus        61 ~~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          61 DSSELTIRNVDKN-DEAEYVCIAENK---AGEQDASIHLKVFA   99 (100)
T ss_dssp             TSCEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEC
T ss_pred             CceEEEeCCCCcc-cCEEEEEEEEEC---CCEEEEEEEEEEEE
Confidence            3457999999999 999999999995   45666777888863

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4e-07  Score=47.48  Aligned_cols=45  Identities=22%  Similarity=0.401  Sum_probs=33.2

Q ss_pred             EEEEeCCCCeEEEEEcccee-eccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASF-ERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~-~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ++......+...|.|.++.. + |+|.|+|.|.|.   .+..+..+.|.|
T Consensus        55 ~~~~~~~~~~~~L~I~~v~~~~-D~G~Y~C~A~N~---~G~~~~~~~L~V  100 (101)
T d3b5ha1          55 RFFVSSSQGRSELHIENLNMEA-DPGQYRCNGTSS---KGSDQAIITLRV  100 (101)
T ss_dssp             TEEEEEETTEEEEEECSCCTTT-SSEEEEEEEEET---TEEEEEEEEEEE
T ss_pred             eEEEEeCCCEEEEEEecccccc-CCEEEEEEEEEC---CCEEEEEEEEEE
Confidence            34444445677899999985 7 999999999995   455666666665

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=3.3e-07  Score=47.54  Aligned_cols=41  Identities=22%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ..+|+|.+++.+ |+|.|+|.|.+..+  ...+..+.|+|+.+|
T Consensus        55 ~~~L~I~~v~~~-d~G~Y~C~a~N~~g--~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          55 NSILRIDPIKRE-DAGEYQCEISNPVS--VRRSNSIKLDIIFDP   95 (96)
T ss_dssp             TTEEEECSCCGG-GCEEEEEEEESSSC--CEECCCCEEEECCSC
T ss_pred             ceEEEEeccchh-hceEEEEEEEeCCC--CeEEEeEEEEEEcCC
Confidence            347999999999 99999999998522  233456788887665

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.39  E-value=2.6e-07  Score=48.08  Aligned_cols=38  Identities=18%  Similarity=0.458  Sum_probs=30.7

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +..+|.|.++... |+|.|+|.+.|.   .+..+..+.|+|+
T Consensus        60 ~~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~Vl   97 (97)
T d3dara1          60 QHWSLIMESVVPS-DKGNYTCVVENE---YGSINHTYHLDVV   97 (97)
T ss_dssp             GGTEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEC
T ss_pred             CcEEEEECCCCcc-cCEEEEEEEEEC---CCEEEEEEEEEEC
Confidence            3457999999999 999999999995   4556666777763

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.39  E-value=2.3e-07  Score=48.32  Aligned_cols=43  Identities=16%  Similarity=0.319  Sum_probs=31.2

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .......+|.|.+++.+ |+|.|+|.+.|..+  ...+..+.|+|+
T Consensus        55 ~~~~~~~~L~I~~~~~~-D~G~Y~C~a~N~~G--~~~s~s~~L~Vl   97 (97)
T d1biha3          55 HNRTSGKRLLFKTTLPE-DEGVYTCEVDNGVG--KPQKHSLKLTVV   97 (97)
T ss_dssp             CSSSTTSEEEESSCCGG-GCEEEEEEECCSSS--SCEEEEEEEEEE
T ss_pred             eeecCCCEEEEEecccc-ccEEEEEEEEECCC--cEEEEEEEEEEC
Confidence            33344557999999999 99999999999632  223445677764

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.7e-07  Score=46.91  Aligned_cols=41  Identities=32%  Similarity=0.524  Sum_probs=32.6

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ...|.|.+++.+ |+|.|.|++.+..  ....+..+.|+|..+|
T Consensus        48 ~~~l~i~~~~~~-dsG~Y~C~a~n~~--~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          48 NHNISITNATVE-DSGTYYCTGKVWQ--LDYESEPLNITVIKAP   88 (89)
T ss_dssp             SSEEEESSCCGG-GCEEEEEEEEETT--EEEECCCEEEEEECSC
T ss_pred             cceEEEeeeeee-cCcEEEEEEEeCC--CCeEeeeEEEEEEeCC
Confidence            346999999999 9999999999852  2445677888888665

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.38  E-value=6e-07  Score=46.13  Aligned_cols=37  Identities=24%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +..|.|.+++.+ |+|.|+|.+.|.   .+..+..+.|.|.
T Consensus        54 ~~~L~I~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~   90 (91)
T d1cs6a3          54 EPLLHIQNVDFE-DEGTYECEAENI---KGRDTYQGRIIIH   90 (91)
T ss_dssp             SSEEEECSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             eeEEEeCCCCcc-CCEEEEEEEEEC---CCEEEEEEEEEEE
Confidence            447999999999 999999999995   4555666777764

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=7e-07  Score=46.63  Aligned_cols=36  Identities=25%  Similarity=0.500  Sum_probs=27.3

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      +|+|.+++.+ |+|.|+|.+.+..+ ....+..+.+.|
T Consensus        66 tL~I~~v~~~-D~G~Y~C~a~n~~g-~~~~~~~v~v~V  101 (102)
T d1f97a1          66 GITFSSVTRK-DNGEYTCMVSEEGG-QNYGEVSIHLTV  101 (102)
T ss_dssp             EEEESCCCGG-GCEEEEEEEEETTS-SSEEEEEEEEEE
T ss_pred             EEEEeECCcc-CCEEEEEEEEECCC-CEEEEEEEEEEE
Confidence            6999999999 99999999998633 334444455555

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=6.3e-07  Score=47.39  Aligned_cols=40  Identities=35%  Similarity=0.498  Sum_probs=32.9

Q ss_pred             CCCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          56 TPPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        56 ~~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +||..|.+..  ...+.+|+.+.|.|.+..|.|.+.+.|+++
T Consensus         1 VPP~~p~~~~--~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~   40 (110)
T d1f97a2           1 VPPSKPTISV--PSSVTIGNRAVLTCSEHDGSPPSEYSWFKD   40 (110)
T ss_dssp             BCCCCCEEEC--CSEEETTSCEEEEEECSCCBSCCEEEEEET
T ss_pred             CCCccceeCC--CCEEecCCeEEEEEEeecCCCCCEEEEEeC
Confidence            3677777753  347889999999999877899999999974

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.33  E-value=2e-06  Score=44.02  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=28.9

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +|.|.++..+ |+|.|+|.+.|.   .+..+..+.|.|.
T Consensus        54 ~L~i~~v~~~-D~G~Y~C~a~N~---~G~~~~~~~l~V~   88 (89)
T d1cs6a4          54 ELRFSKLVLE-DSGMYQCVAENK---HGTVYASAELTVQ   88 (89)
T ss_dssp             EEEESSCCGG-GCEEEEEEEEET---TEEEEEEEEEEEE
T ss_pred             eEEEEeeccc-CCEEEEEEEEeC---CCEEEEEEEEEEE
Confidence            6999999999 999999999995   4555666777764

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.2e-06  Score=45.94  Aligned_cols=36  Identities=17%  Similarity=0.289  Sum_probs=31.1

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      +|.|.+++.+ |+|.|+|.+.|.   .+.....+.|.|+.
T Consensus        60 ~L~I~~v~~~-D~G~Y~C~a~N~---~g~~~~~~~L~V~~   95 (101)
T d1iray1          60 KLWFVPAKVE-DSGHYYCVVRNS---SYCLRIKISAKFVE   95 (101)
T ss_dssp             EEEETTCCGG-GCEEEEEEEEET---TEEEEEEEEEEEEC
T ss_pred             EEEeccceec-CCEEEEEEEECC---CCeEEEEEEEEEEe
Confidence            6999999999 999999999995   56667778888874

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=6.5e-07  Score=45.63  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=27.6

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      +|+|.+++.. |+|.|+|.+.|.   .+..+..+.|.|
T Consensus        55 ~L~i~~v~~~-d~G~Y~C~a~N~---~G~~~~~~~l~V   88 (89)
T d1gl4b_          55 ILTIRNVQPS-DAGTYVCTGSNM---FAMDQGTATLHV   88 (89)
T ss_dssp             EEEECSCCGG-GCEEEEEEEECS---SCEEEEEEEEEE
T ss_pred             EEEEecCCcc-cCEEEEEEEEEC---CCEEEEEEEEEE
Confidence            6999999999 999999999996   345555566655

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=5.4e-07  Score=47.76  Aligned_cols=40  Identities=13%  Similarity=0.147  Sum_probs=31.8

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ...|.|.++... |+|.|+|.+.|.   .+..+..+.+.|+.+|
T Consensus        62 ~~~L~i~~~~~~-D~G~Y~C~A~N~---~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          62 HGCLRLNQPTHV-NNGNYTLLAANP---FGQASASIMAAFMDNP  101 (107)
T ss_dssp             EEEEEEESCCGG-GCEEEEEEEEET---TEEEEEEEEECCCSCT
T ss_pred             ceEEEECcccHH-HCcEEEEEEEeC---CCEEEEEEEEEEEcCC
Confidence            356999999999 999999999995   4566666777766554

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=4.9e-07  Score=47.59  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=31.3

Q ss_pred             eEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPP   58 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~   58 (98)
                      ...|+|.+++.. |+|.|+|.|.|.   .+..+..+.|.|..+|
T Consensus        61 ~~~L~i~~~~~~-D~G~Y~C~a~N~---~G~~~~~~~v~V~~~P  100 (103)
T d1wwbx_          61 HGCLQLDNPTHM-NNGDYTLIAKNE---YGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEEEEEESCCGG-GCEEEEEEEECS---SCEEEEEEEECCSCCC
T ss_pred             eEEEEECCCCHH-hCceEEEEEecc---CCEEEEEEEEEEEeCC
Confidence            457999999999 999999999996   4555666666665444

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=1.9e-06  Score=44.59  Aligned_cols=40  Identities=23%  Similarity=0.422  Sum_probs=30.9

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .+..+|.|.+++.+ |+|.|+|.+.|..+  ...+..+.|.|+
T Consensus        57 ~~~~~L~I~~~~~~-D~G~Y~C~a~N~~G--~~~~~tv~l~V~   96 (97)
T d1epfa1          57 DDSSTLTIYNANID-DAGIYKCVVTAEDG--TQSEATVNVKIF   96 (97)
T ss_dssp             TTEEEEEECSCCGG-GCEEEEEEEEETTT--EEEEEEEEEEEE
T ss_pred             CcceEEEcccCchh-hceEEEEEEEeCCC--cEEEEEEEEEEE
Confidence            45678999999999 99999999998532  234456777765

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=8.2e-07  Score=45.45  Aligned_cols=46  Identities=22%  Similarity=0.194  Sum_probs=32.3

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +..........|.|.+++.+ |+|.|+|.+.|..+  ...+..+.|.|.
T Consensus        45 ~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~N~~G--~~~S~~~~l~V~   90 (91)
T d1rhfa1          45 IPVSEQHWIGFLSLKSVERS-DAGRYWCQVEDGGE--TEISQPVWLTVE   90 (91)
T ss_dssp             EEEETTEEEEEEEESSCCGG-GCEEEEEEESSCTT--CEECCCEEEEEE
T ss_pred             eeecccCceeeEEECCCCcc-cCEEEEEEEEECCC--CEEEEEEEEEEE
Confidence            33444555668999999999 99999999998532  223445666653

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.28  E-value=1.5e-06  Score=44.43  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=28.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCee-eEeeEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDL-HSQVYTVTVLT   56 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~-~~~~~~l~v~~   56 (98)
                      ..|.|.+++.+ |+|.|.|.+.+.   ... .+..+.|.|..
T Consensus        49 ~~l~i~~v~~~-dsG~Y~C~a~n~---~g~~~S~~v~l~V~~   86 (88)
T d2fcba2          49 PNFSIPQANHS-HSGDYHCTGNIG---YTLYSSKPVTITVQA   86 (88)
T ss_dssp             CEEEETTCCGG-GCEEEEEEEEET---TEEEECCCEEEEECC
T ss_pred             cccccCccCHH-HCCeEEEEEEeC---CCCEEeeeEEEEEeC
Confidence            46999999999 999999999985   333 34567777754

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.5e-07  Score=48.54  Aligned_cols=36  Identities=17%  Similarity=0.158  Sum_probs=26.6

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..+++|+|++++.+ |+|.|+|++.+.     ..+..+.|.|
T Consensus        57 ~~~~sL~I~~l~~~-DsG~Y~c~~~n~-----~~t~~~~l~V   92 (93)
T d1ccza1          57 TVSGSLTIYNLTSS-DEDEYEMESPNI-----TDTMKFFLYV   92 (93)
T ss_dssp             TTTCCEEECSCCGG-GCEEEEEECTTC-----CSCEEEEEEE
T ss_pred             CCeeEEEEEecChh-hCEEEEEEEECC-----CcEEEEEEEE
Confidence            34567999999999 999999998653     2233456665

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.25  E-value=1.7e-06  Score=44.23  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=27.2

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .|.|.++... |+|.|+|.+.|.   .+..+..+.|.|
T Consensus        55 ~L~i~~v~~~-d~G~Y~C~a~N~---~G~~~~~~~l~V   88 (89)
T d1biha4          55 GLVIKGVKNG-DKGYYGCRATNE---HGDKYFETLVQV   88 (89)
T ss_dssp             EEEESSCCST-TCEEEEEEEEET---TEEEEEEEEEEE
T ss_pred             eEEECCCChh-hCEEEEEEEEEC---CCEEEEEEEEEE
Confidence            4999999999 999999999995   455555566655

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=3.1e-06  Score=44.32  Aligned_cols=40  Identities=23%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEECCCCCee-eEeeEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKAAGSGQDL-HSQVYTVTVL   55 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~-~~~~~~l~v~   55 (98)
                      ..+.+.|+|.++..+ |+|.|+|.|.|.   .+. .+..+.|.|.
T Consensus        61 ~~~~~~L~I~~v~~~-D~G~Y~C~A~N~---~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          61 NISFFILHFEPVLPN-DNGSYRCSANFQ---SNLIESHSTTLYVT  101 (104)
T ss_dssp             SCEEEEEEESSCCGG-GCEEEEEEEEET---TEEEECCCEEEEEE
T ss_pred             CceEEEEEEccccHH-HCCeEEEEEEcC---CCeEEEEEEEEEEE
Confidence            344567999999999 999999999995   332 3445666664

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.6e-06  Score=46.27  Aligned_cols=30  Identities=23%  Similarity=0.444  Sum_probs=25.8

Q ss_pred             EEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           8 DYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         8 ~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        68 ~~~~~~~~~~Lti~~l~~~-Dsg~Y~Cav~~   97 (113)
T d1smoa_          68 EDYHDHGLLRVRMVNLQVE-DSGLYQCVIYQ   97 (113)
T ss_dssp             EEETTTTEEEEEECSCCGG-GCEEEEEEECC
T ss_pred             EEECCCCEEEEEEccCCcc-cCceEEEEEEC
Confidence            3456778899999999999 99999998865

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=8.6e-07  Score=46.84  Aligned_cols=38  Identities=18%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..|.|.+++.+ |+|.|+|.|.|..+ ....+..+.|.|.
T Consensus        67 ~~l~I~~v~~~-D~G~Y~C~a~N~~G-~~~~s~~v~l~V~  104 (110)
T d1f97a2          67 GDLIFDPVTAF-DSGEYYCQAQNGYG-TAMRSEAAHMDAV  104 (110)
T ss_dssp             CCEEESSCCGG-GCEEEEEEEECSSS-CCEECCCEEEEEE
T ss_pred             cceEECCCCcc-CCEEEEEEEEECCC-cEEEEEEEEEEEE
Confidence            36899999999 99999999998643 3344556777775

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.7e-07  Score=46.47  Aligned_cols=41  Identities=17%  Similarity=0.186  Sum_probs=30.6

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +......+.++|.|.++..+ |+|.|+|.+.+.       +..+.|+|.
T Consensus        48 ~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~-------~~~a~l~V~   88 (90)
T d1x44a1          48 YRIRVEGKKHILIIEGATKA-DAAEYSVMTTGG-------QSSAKLSVD   88 (90)
T ss_dssp             EEEEEETTEEEEEEEEECTT-TCSEEEEEETTE-------EEEEEEEEE
T ss_pred             EEEEEeCCccEEEECccccc-cCEEEEEEEecc-------eEEEEEEEE
Confidence            44555567889999999999 999999998641       334566664

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.5e-07  Score=49.95  Aligned_cols=28  Identities=25%  Similarity=0.513  Sum_probs=24.9

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +...++++|+|.+++.+ |+|.|.|++..
T Consensus        77 ~~~~~~~sL~I~~v~~~-DsG~Y~C~v~~  104 (121)
T d2g5ra1          77 DPQTKNCTLSIRDARMS-DAGRYFFRMEK  104 (121)
T ss_dssp             CGGGTBCCEEECSCCGG-GCEEEEEEEEE
T ss_pred             eCcCCEEEEEECCCChH-HCEEEEEEEEe
Confidence            34567899999999999 99999999987

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.18  E-value=2.2e-06  Score=43.91  Aligned_cols=36  Identities=25%  Similarity=0.529  Sum_probs=27.9

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .|.|.+++.+ |+|.|.|.+.+..  ....+..+.|+|.
T Consensus        52 ~l~I~~v~~~-dsG~Y~C~a~n~~--~~~~S~~v~itV~   87 (89)
T d1fnla2          52 DFHIPKATLK-DSGSYFCRGLVGS--KNVSSETVNITIT   87 (89)
T ss_dssp             CEEESSCCGG-GCEEEEEEEEETT--EEEECCCEEEEEE
T ss_pred             ccEECcccee-ccceEEEEEEeCC--CCeEEeeEEEEEE
Confidence            5899999999 9999999999852  2334556777775

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=8.7e-07  Score=46.35  Aligned_cols=23  Identities=22%  Similarity=0.602  Sum_probs=21.3

Q ss_pred             EEEEccceeeccCeEEEEEEEECC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAG   40 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~   40 (98)
                      +|.|.+++.+ |+|.|+|.+.+..
T Consensus        69 ~L~I~~v~~~-D~G~Y~C~a~n~~   91 (105)
T d1nbqa1          69 GITFKSVTRE-DTGTYTCMVSEEG   91 (105)
T ss_dssp             EEECSCCCTT-SCSEEEEEEEETT
T ss_pred             eEEEeccccc-ceeeEEEEEEECC
Confidence            6999999999 9999999999964

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.15  E-value=2.6e-07  Score=47.46  Aligned_cols=35  Identities=14%  Similarity=0.133  Sum_probs=28.8

Q ss_pred             ceeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           3 KVEIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         3 ~~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+.++.+....+.+.|.|.++..+ |+|.|+|.+.+
T Consensus        43 ~~~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~c~a~n   77 (89)
T d1tiua_          43 ASPDCEIIEDGKKHILILHNCQLG-MTGEVSFQAAN   77 (89)
T ss_dssp             SSSSCEEEECSSCEEEECCSCCSC-CCSEECCBCSS
T ss_pred             cceeEEEEeeceeEEEEEcCCChh-cCEEEEEEECc
Confidence            345566666677889999999999 99999999865

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7.4e-07  Score=46.61  Aligned_cols=39  Identities=31%  Similarity=0.518  Sum_probs=31.1

Q ss_pred             CCCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          57 PPQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        57 ~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ||..|.+.  ....+.+|+.+.|.|.+..|.|.|.+.|+++
T Consensus         2 PP~~p~~~--~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~   40 (104)
T d1nbqa2           2 PPSKPTVN--IPSSATIGNRAVLTCSEQDGSPPSEYTWFKD   40 (104)
T ss_dssp             CCCCCCCC--CBSEEETTSCEEECCCCCSCBSCCEEEEEET
T ss_pred             CCcccccC--CCCEEecCCcEEEEEEeecCCCCCEEEEEEC
Confidence            56665553  3457889999999999877899999999975

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4e-06  Score=44.17  Aligned_cols=38  Identities=21%  Similarity=0.335  Sum_probs=26.9

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCC-eeeEeeEEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQ-DLHSQVYTVTVL   55 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~-~~~~~~~~l~v~   55 (98)
                      .|.|.++..+ |+|.|+|.+.+..++. ...+..+.+.|+
T Consensus        59 ~L~I~~v~~~-D~G~Y~C~a~n~~~g~~~~vt~~i~~~v~   97 (103)
T d1iray2          59 RLIVMNVAEK-HRGNYTCHASYTYLGKQYPITRVIEFITL   97 (103)
T ss_dssp             EEEESSCCGG-GCEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             EEEEcccccc-cCcEEEEEEEECcCCEEEEEEEEEEEEEC
Confidence            5999999999 9999999998753322 222444555554

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.11  E-value=2.4e-06  Score=43.85  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=25.9

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +|.|.+++.. |+|.|+|.+.+.+   ........+.|.
T Consensus        57 ~L~I~~~~~~-D~G~Y~C~a~n~~---~~~~~~~~i~Vi   91 (92)
T d1epfa2          57 YLQIRGIKKT-DEGTYRCEGRILA---RGEINFKDIQVI   91 (92)
T ss_dssp             CEEETTCCGG-GCEEEEEEEEEGG---GTEEEEEEEEEE
T ss_pred             eEEECCCCHH-hCEEEEEEEEECc---CCEEEEEEEEEE
Confidence            5999999999 9999999999852   333334445543

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.08  E-value=8e-06  Score=42.13  Aligned_cols=31  Identities=16%  Similarity=0.331  Sum_probs=26.4

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ...+.....++|+|++++++ |+|.|.|.+..
T Consensus        48 ~~~~~~~~~~sL~I~~~~~~-Dsg~YyCa~~~   78 (94)
T d2gj6d1          48 AQLNKASQYVSLLIRDSQPS-DSATYLCAVTT   78 (94)
T ss_dssp             EEEETTTTEEEEEECSCCGG-GCEEEEEEEES
T ss_pred             EEecCCCCEEeEEeeccccC-cCccceeeEec
Confidence            34556777899999999999 99999998765

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=8.7e-07  Score=46.05  Aligned_cols=26  Identities=35%  Similarity=0.749  Sum_probs=22.9

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..++++|+|++++.+ |+|.|.|.+.+
T Consensus        63 ~~~~~sL~I~~l~~~-DsG~Y~C~v~~   88 (97)
T d2nxyb1          63 DQGNFPLIIKNLKIE-DSDTYICEVED   88 (97)
T ss_dssp             GGTBCCEEECSCCGG-GCEEEEEEETT
T ss_pred             CCCEEEEEECCCChH-HCEEEEEEEec
Confidence            456789999999999 99999999864

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.5e-06  Score=45.03  Aligned_cols=41  Identities=15%  Similarity=0.268  Sum_probs=29.9

Q ss_pred             CCCCCEEeC-CCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          57 PPQPPKISP-GANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        57 ~~~~p~i~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      |+..|.+.. .....+.+|+.+.|.|.+.++.|.+++.|+++
T Consensus         3 P~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~   44 (93)
T d1n26a1           3 PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLR   44 (93)
T ss_dssp             SSCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEE
T ss_pred             CCCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEc
Confidence            445565522 24568888999999999875555679999985

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=1.9e-06  Score=45.68  Aligned_cols=36  Identities=11%  Similarity=0.156  Sum_probs=26.3

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .+|+|.+++.+ |+|.|+|++.+...  ...+..+.|.|
T Consensus        71 gSL~I~~v~~~-D~G~Y~c~v~~~~~--~~~~~~v~L~V  106 (107)
T d1l6za1          71 GSLLFQMITMK-DMGVYTLDMTDENY--RRTQATVRFHV  106 (107)
T ss_dssp             SCEEECSCCGG-GCEEEEEEEEETTE--EECCCCEEECC
T ss_pred             ccEEEcCCCch-hCEEEEEEEEECCC--CEEEEEEEEEE
Confidence            47999999999 99999999987421  23334455544

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=4.1e-06  Score=42.25  Aligned_cols=30  Identities=10%  Similarity=0.284  Sum_probs=25.8

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ++..+.+|+++.|+|.+. |.|.|.+.|++.
T Consensus         7 ~~~~v~~G~~~~L~C~~~-g~p~P~i~W~~~   36 (84)
T d2nxyb2           7 SDTHLLQGQSLTLTLESP-PGSSPSVQCRSP   36 (84)
T ss_dssp             CSSCEETTCCEEEEEECC-TTCCCEEEEECT
T ss_pred             CCeEEECCCeEEEEEEeE-cCCchheEEEee
Confidence            445788999999999985 899999999864

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.3e-06  Score=45.18  Aligned_cols=31  Identities=19%  Similarity=0.419  Sum_probs=25.4

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +.+....+.+.|.|.++... |+|.|+|.+.+
T Consensus        53 ~~~~~~~~~~~L~I~~~~~~-D~G~Y~c~a~n   83 (94)
T d1pd6a_          53 YIFESIGAKRTLTISQCSLA-DDAAYQCVVGG   83 (94)
T ss_dssp             SEEEEETTEEEEEECSCSSS-SCEEEEEEETT
T ss_pred             EeeeccCCeEEeecCCCCce-ecEEEEEEEee
Confidence            34444567889999999999 99999999864

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=6.4e-06  Score=41.75  Aligned_cols=34  Identities=24%  Similarity=0.342  Sum_probs=27.1

Q ss_pred             EEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEEC
Q psy5866          19 IISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLT   56 (98)
Q Consensus        19 ~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~   56 (98)
                      .+.+++.+ |+|.|.|.|.|.   .+..+..+.|+|+.
T Consensus        50 ~~~~v~~~-d~G~Y~C~A~N~---~G~~~~~~~l~V~~   83 (84)
T d2oz4a3          50 ESVTVTRD-LEGTYLCRARST---QGEVTREVTVNVLS   83 (84)
T ss_dssp             SCEECCGG-GCEEEEEEEEET---TEEEEEEEEEEEEC
T ss_pred             eeeccccC-CCCEEEEEEEcC---CCEEEEEEEEEEEC
Confidence            45678889 999999999995   45666778888864

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.97  E-value=8.2e-06  Score=41.65  Aligned_cols=31  Identities=16%  Similarity=0.156  Sum_probs=26.0

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +...+.+|+++.|.|.+..+.|.+.+.|+++
T Consensus        10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kn   40 (89)
T d1fnla2          10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQN   40 (89)
T ss_dssp             SCSEEETTCCEEEEEEECTTCCCEEEEEEET
T ss_pred             CCCeEccCCeEEEEEEecCCCCCcEEEEEEc
Confidence            3456889999999999877778889999985

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=5.5e-06  Score=42.61  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=21.7

Q ss_pred             EEEEccceeeccCeEEEEEEEECCC
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGS   41 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~   41 (98)
                      +|.|.+++.+ |+|.|+|.+.+..+
T Consensus        51 ~L~I~~v~~~-DsG~Y~C~A~n~~g   74 (92)
T d1olza1          51 NLLIFNLSEG-DSGVYQCLSEERVK   74 (92)
T ss_dssp             CEEECSCCGG-GCEEEEEEEEEECS
T ss_pred             EEEECCCCHH-HCcEEEEEEEEcCC
Confidence            5999999999 99999999998643

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.96  E-value=5.6e-06  Score=42.18  Aligned_cols=31  Identities=19%  Similarity=0.257  Sum_probs=26.0

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +...+.+|+.+.|.|.+.++.|.+.+.|+++
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~   38 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQN   38 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEET
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEee
Confidence            4456889999999999876777889999985

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=7.1e-06  Score=43.22  Aligned_cols=40  Identities=13%  Similarity=0.265  Sum_probs=29.1

Q ss_pred             CCCCCEEeCCCCceecCCCcEEEEEEcCCCCCC--CeEEEEec
Q psy5866          57 PPQPPKISPGANPVATEGRAIELVCSTSGGSPD--PQISVTLQ   97 (98)
Q Consensus        57 ~~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~   97 (98)
                      ||..+.+.. ....+.+|+.++|+|.+.+++|.  +++.|+++
T Consensus         1 PP~~v~i~~-~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~   42 (106)
T d1zxqa1           1 PPRQVILTL-QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRG   42 (106)
T ss_dssp             CCCCCEEEE-ESSEECTTSEEEEEEEECSCBCGGGEEEEEEET
T ss_pred             CCcCCEecC-CCCEEeCCCEEEEEEEEeCcccCCCceEEEEcC
Confidence            344444543 34578899999999999877654  47899975

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=3e-05  Score=41.31  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=27.5

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +.+..+.....++|.|.+++.+ |+|.|.|.+...
T Consensus        62 f~~~~~~~~~~~~L~I~~~~~~-Dsg~YyCa~~~~   95 (114)
T d3bp5a1          62 FQIIQLPNRHDFHMNILDTRRN-DSGIYLCGAISL   95 (114)
T ss_dssp             EEEEECTTSSEEEEEESSCCGG-GCEEEEEEEECS
T ss_pred             ceEEEeCCCCEEEEEECccCcC-CCeEEEEEEEeC
Confidence            3444556667899999999999 999999988753

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=4e-06  Score=42.52  Aligned_cols=31  Identities=16%  Similarity=0.320  Sum_probs=26.7

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+++.|.|.+.++.|.+.+.|+++
T Consensus        10 ~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~   40 (89)
T d1gl4b_          10 RSQSVRPGADVTFICTAKSKSPAYTLVWTRL   40 (89)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEG
T ss_pred             CeEEEeCCCcEEEEEEccCCCCCCEEEEecC
Confidence            3467889999999999976788999999975

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.93  E-value=9.9e-06  Score=42.47  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             EEEEccceeeccCeEEEEEEEEC
Q psy5866          17 DLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +|.|.+++.+ |+|.|+|.+.|.
T Consensus        62 ~L~I~~v~~~-D~G~Y~C~a~N~   83 (105)
T d1cs6a2          62 NLYIAKTEAS-DLGNYSCFATSH   83 (105)
T ss_dssp             CEEESSCCGG-GCEEEEEEEEEE
T ss_pred             EEeecccccc-cCcEEEEEEEEC
Confidence            6999999999 999999999985

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.92  E-value=3.8e-05  Score=40.96  Aligned_cols=50  Identities=14%  Similarity=0.145  Sum_probs=34.8

Q ss_pred             eeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           4 VEIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         4 ~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      +.++.++.....++|+|.+++.+ |+|.|.|.+..... ....-....|+|.
T Consensus        59 ~~~~~~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~~~~-~~~FG~GT~LtV~  108 (115)
T d1ogad1          59 RLTFQFGDARKDSSLHITAAQPG-DTGLYLCAGAGSQG-NLIFGKGTKLSVK  108 (115)
T ss_dssp             TEEEEECTTSSEEEEEESSCCGG-GCEEEEEEEECTTS-SEEECCCEEEEEE
T ss_pred             ccccccccccceeeeeecCCCcc-ceeeEcccccCCCC-CcEECCCEEEEEe
Confidence            34566777888999999999999 99999998764321 1222233456664

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.3e-05  Score=40.57  Aligned_cols=30  Identities=20%  Similarity=0.390  Sum_probs=25.9

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      .+..+.+|+.+.|.|.+. |.|.| ++.|+++
T Consensus         9 ~~~~v~~G~~~~l~C~~~-g~P~P~~i~W~k~   39 (85)
T d1rhfa2           9 KDLAVPPNAPFQLSCEAV-GPPEPVTIVWWRG   39 (85)
T ss_dssp             CCEEECTTCCEEEEEEEE-CSSSCCEEEEEET
T ss_pred             CcEEEcCCCEEEEEEEEe-cCCcceEEEEEEC
Confidence            457889999999999996 78887 8999985

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.91  E-value=1e-05  Score=42.95  Aligned_cols=34  Identities=12%  Similarity=0.113  Sum_probs=27.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .++....+...++|+|++++.+ |+|.|.|.+...
T Consensus        61 ~r~~~~~~~~~~~L~I~~~~~~-Dsa~YyCA~~~~   94 (111)
T d1rzfl1          61 DRFSGSKSGTSATLGITGLQTG-DEADYYCGTWDS   94 (111)
T ss_dssp             TTEEEEEETTEEEEEESSCCGG-GCSEEEEEEEET
T ss_pred             cceeeeCCCCEeeeEEeeeccc-cCcceEEeecCC
Confidence            4555555667899999999999 999999987653

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.90  E-value=4.5e-06  Score=42.79  Aligned_cols=24  Identities=17%  Similarity=0.423  Sum_probs=21.9

Q ss_pred             eEEEEEccceeeccCeEEEEEEEEC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..+|.|.++..+ |+|.|+|.+.|.
T Consensus        57 ~~~L~i~~v~~~-D~G~Y~C~a~N~   80 (94)
T d1biha1          57 EGSLVFLRPQAS-DEGHYQCFAETP   80 (94)
T ss_dssp             SCCEEESSCCGG-GCEEEEEEEEET
T ss_pred             ceEEEEeccChh-cCeEEEEEEEeC
Confidence            346999999999 999999999996

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.9e-06  Score=44.21  Aligned_cols=37  Identities=16%  Similarity=0.350  Sum_probs=26.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      ..|.|.+++.+ |+|.|+|.+.|..+ ....+..+.|.|
T Consensus        66 ~~l~I~~v~~~-D~G~Y~C~a~N~~G-~~~~s~~v~v~v  102 (104)
T d1nbqa2          66 GELVFDPLSAS-DTGEYSCEARNGYG-TPMTSNAVRMEA  102 (104)
T ss_dssp             CCEEESSCCGG-GCCCEEEEEECSSS-CCEECCCBCCEE
T ss_pred             cceEECCCCcc-cCcEEEEEEEECCC-ceEEEEEEEEEE
Confidence            46899999999 99999999999643 233333444444

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=97.87  E-value=1.4e-05  Score=41.69  Aligned_cols=37  Identities=24%  Similarity=0.439  Sum_probs=29.7

Q ss_pred             CCEEeC--CCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          60 PPKISP--GANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        60 ~p~i~~--~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +|.|..  ..+..+.+|+++.|.|.+. |.|.|.+.|+++
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~-g~P~p~v~W~k~   42 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVY-SDAQPHIQWIKH   42 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEE-CSSCCEEEEEEE
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEE-EcCCCeEEEEec
Confidence            455531  2567899999999999996 799999999874

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.87  E-value=3.8e-06  Score=42.87  Aligned_cols=33  Identities=21%  Similarity=0.354  Sum_probs=27.8

Q ss_pred             eCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          64 SPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        64 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus         6 ~~~~~~~v~~G~~~~l~C~~~-g~P~p~v~W~k~   38 (89)
T d1cs6a4           6 DVITDTEADIGSDLRWSCVAS-GKPRPAVRWLRD   38 (89)
T ss_dssp             ECCCCEEEETTCCEEEECEEE-EESCCEEEEEET
T ss_pred             EECCCEEECCCCcEEEEEEEE-EEcCCEEEEEEe
Confidence            333567889999999999985 899999999985

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.87  E-value=1.7e-05  Score=40.84  Aligned_cols=30  Identities=17%  Similarity=0.309  Sum_probs=26.5

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus         9 ~~~~v~~G~~~~l~C~~~-g~P~p~v~W~~~   38 (97)
T d1koaa1           9 YGTEVGEGQSANFYCRVI-ASSPPVVTWHKD   38 (97)
T ss_dssp             CCCEEETTSCEEEEEEEE-CSSCCEEEEEET
T ss_pred             CCEEEeCCCcEEEEEEEE-EcCCCEEEEEEe
Confidence            567889999999999985 789999999975

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.84  E-value=2.5e-05  Score=41.72  Aligned_cols=49  Identities=18%  Similarity=0.132  Sum_probs=32.6

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ++....+...++|.|.+++.+ |++.|.|............-....|+|+
T Consensus        62 ~~~~~~~~~~~~L~I~~v~~~-DsA~YyCA~~~~~~~~~~FG~GT~LtVl  110 (114)
T d2rhea_          62 RFSASKSGTSASLAISGLESE-DEADYYCAAWNDSLDEPGFGGGTKLTVL  110 (114)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEEEETTTTEEEECCCEEEEEC
T ss_pred             cceecCCCCeeeeEecccCcc-cCceEEEeecCCCCCCCEECCCeEEEEC
Confidence            444444567899999999999 9999999876532211222233456665

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.9e-06  Score=43.86  Aligned_cols=22  Identities=18%  Similarity=0.576  Sum_probs=19.9

Q ss_pred             EEEEccceeeccCeEEEEEEEEC
Q psy5866          17 DLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +|.|.+++.+ |+|.|+|.+.+.
T Consensus        61 ~L~I~~v~~~-D~G~Y~C~a~n~   82 (93)
T d1n26a1          61 RLLLRSVQLH-DSGNYSCYRAGR   82 (93)
T ss_dssp             EEEECSCCGG-GCEEEEEESSSS
T ss_pred             EEEECCCChh-cCEEEEEEECCc
Confidence            6999999999 999999988763

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.2e-06  Score=44.34  Aligned_cols=37  Identities=16%  Similarity=0.176  Sum_probs=28.7

Q ss_pred             eEEEEEccceeecc-CeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          15 RYDLIISNASFERD-NGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        15 ~~~l~I~~v~~~~d-~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ...|.|.++... | +|.|+|.|.|.   .+..+..+.|.|.
T Consensus        68 ~s~L~I~~v~~~-D~~G~Y~C~A~N~---~G~~~~~~~L~V~  105 (115)
T d2crya1          68 ISTLTISNIVRA-DFQTIYNCTAWNS---FGSDTEIIRLKEQ  105 (115)
T ss_dssp             EEEEECTTCCHH-HHHSCEEEEEECS---SCEEEEEECCCCS
T ss_pred             EEEEEEeccchh-cCCeEEEEEEEEC---CCeEEEEEEEEEE
Confidence            346999999999 8 69999999996   4555666666654

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=3.1e-05  Score=41.15  Aligned_cols=31  Identities=13%  Similarity=0.393  Sum_probs=26.2

Q ss_pred             EEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           8 DYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         8 ~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..+...+.++|+|++++.+ |+|.|.|.....
T Consensus        64 s~d~~~~~~~lti~~L~~e-Dsa~YyCa~~~~   94 (110)
T d1u9ka_          64 KHDPSEAMLQVQMTDLQVT-DSGLYRCVIYHP   94 (110)
T ss_dssp             EEEGGGTEEEEEECSCCGG-GCEEEEEEEECT
T ss_pred             EEECCCCEEEEEECccccC-CCEEEEEEEeCC
Confidence            3456678899999999999 999999988654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.3e-05  Score=42.73  Aligned_cols=34  Identities=15%  Similarity=0.229  Sum_probs=27.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .++........++|+|++++.+ |+|.|.|.+...
T Consensus        66 ~rfs~~~~~~~~~L~I~~l~~~-Dsg~YyCa~~~~   99 (114)
T d1akjd_          66 QRFSGKRLGDTFVLTLSDFRRE-NEGYYFCSALSN   99 (114)
T ss_dssp             TTEEEEEETTEEEEEESSCCGG-GCEEEEEEEEET
T ss_pred             cEEEEECCCCChhcEEccCCCC-CCEEEeEeEcCC
Confidence            3455555566889999999999 999999998763

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=1.1e-05  Score=41.25  Aligned_cols=31  Identities=23%  Similarity=0.280  Sum_probs=27.2

Q ss_pred             CCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          66 GANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        66 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+..+.+|+++.|.|.+. |.|.|.+.|+++
T Consensus         9 ~~~~~v~~G~~~~l~c~~~-g~P~p~v~W~~~   39 (93)
T d1wiua_           9 SRKIKIKAGFTHNLEVDFI-GAPDPTATWTVG   39 (93)
T ss_dssp             CCEEEECSSBCCEEEEEEE-CCSSCEEEEECS
T ss_pred             CCcEEEeCCCeEEEEEEEE-EecCCeEEEEee
Confidence            3567899999999999996 899999999975

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=9.5e-06  Score=41.46  Aligned_cols=30  Identities=23%  Similarity=0.282  Sum_probs=26.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        10 ~~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~   39 (92)
T d2ifga1          10 PNASVDVGDDVLLRCQVE-GRGLEQAGWILT   39 (92)
T ss_dssp             CSSCCBTTCCEEEEEEEE-CSSCCCCCEEES
T ss_pred             CCEEEeCCCEEEEeeecc-CCCCcEEEEEEC
Confidence            567899999999999985 899999999975

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4.8e-06  Score=41.88  Aligned_cols=36  Identities=31%  Similarity=0.507  Sum_probs=26.9

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ....|.|.+++.+ |+|.|.|++.+.     ..+..+.|.|.
T Consensus        46 ~~~~l~i~~v~~~-d~G~Y~C~a~~s-----~~S~~v~l~V~   81 (82)
T d1f2qa1          46 TNSSLNIVNAKFE-DSGEYKCQHQQV-----NESEPVYLEVF   81 (82)
T ss_dssp             CSSEEEECSCCGG-GCEEEEEECTTS-----SCCCCEEEEEE
T ss_pred             ccceeEECCCChh-hCCcEEEEecCC-----CCcccEEEEEE
Confidence            3446999999999 999999998652     23445666664

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.78  E-value=5.1e-06  Score=41.97  Aligned_cols=23  Identities=22%  Similarity=0.556  Sum_probs=20.3

Q ss_pred             eEEEEEccceeeccCeEEEEEEEE
Q psy5866          15 RYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+|.|.+++.+ |+|.|+|++.+
T Consensus        51 ~~~l~i~~~~~~-d~G~Y~C~a~~   73 (84)
T d1fnla1          51 ASSYFIDAATVN-DSGEYRCQTNL   73 (84)
T ss_dssp             CSEEEESSCCGG-GCEEEEEECSS
T ss_pred             ceeeEecCCccc-CCEEEEEEccC
Confidence            346999999999 99999999865

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=3.2e-05  Score=39.43  Aligned_cols=28  Identities=11%  Similarity=0.151  Sum_probs=24.7

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      ..+.+|+++.|+|.+..|.|.|.+.|.+
T Consensus        13 ~~~~~G~~~~l~C~~~~g~p~p~v~W~~   40 (90)
T d1gsma1          13 VAVALGASRQLTCRLACADRGASVQWRG   40 (90)
T ss_dssp             EEEETTCCEEEEEEECCSSTTCEEEEES
T ss_pred             EEEEeCCcEEEEEEecCCCCccEEEEEE
Confidence            5678999999999887688999999986

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.77  E-value=6.1e-05  Score=39.91  Aligned_cols=34  Identities=12%  Similarity=0.357  Sum_probs=28.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .++......+.++|+|.+++.+ |+|.|.|.+...
T Consensus        63 ~~~~~~~~~~~~~L~I~~~~~~-Dsg~YyCa~~~~   96 (114)
T d2ak4d1          63 YSWNFQKSTSSFNFTITASQVV-DSAVYFCALSGF   96 (114)
T ss_dssp             EEEEEETTTTEEEEEESSCCGG-GCEEEEEEEECS
T ss_pred             eEEEEcCCCCEEEEeecccccc-cCCCceEeCCCC
Confidence            3455666778999999999999 999999987653

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.77  E-value=1.8e-05  Score=41.67  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=27.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++........++|+|.++..+ |+|.|.|.+..
T Consensus        60 ~~~~~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~   92 (110)
T d1u3ha1          60 FTIFFNKREKKLSLHIADSQPG-DSATYFCAASA   92 (110)
T ss_dssp             EEEEEETGGGEEEEEESSCCTT-SCSEEEECCEE
T ss_pred             eeEEECCCCCeeEeEeccCCCC-CceeEeeeecC
Confidence            3445556677899999999999 99999998764

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2.5e-05  Score=41.73  Aligned_cols=34  Identities=9%  Similarity=0.137  Sum_probs=28.9

Q ss_pred             eeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           4 VEIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         4 ~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +.++..+...+.++|+|.+++.+ |+|.|.|.+..
T Consensus        65 ~~~~~~~~~~~~~~L~I~~l~~~-DsavYyCa~~~   98 (118)
T d1yjdc1          65 GFNCDGKLGNESVTFYLQNLYVN-QTDIYFCKIEV   98 (118)
T ss_dssp             SCEEEEEECSSEEEEEEESCCGG-GCEEEEEEEEE
T ss_pred             cEEEEEECCCCeEEEEECCCCcc-cCeEEEEEEec
Confidence            34666777788899999999999 99999998765

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2e-05  Score=41.26  Aligned_cols=31  Identities=19%  Similarity=0.439  Sum_probs=24.9

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCC--eEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDP--QISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~   97 (98)
                      ....+.+|+.++|+|.+.++.|.+  ++.|+++
T Consensus        12 ~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~   44 (103)
T d1iama1          12 LPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRG   44 (103)
T ss_dssp             CCSEECTTSEEEEEEEEECCBCGGGEEEEEEET
T ss_pred             CCceEeCCCEEEEEEEecCCCCCCceEEEEccc
Confidence            445788999999999998777766  5779875

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.74  E-value=3.7e-05  Score=40.78  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=26.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ++........++|.|++++.+ |+|.|.|....
T Consensus        63 ~~~~~~~~~~~~L~I~~l~~~-Dsa~YyCa~~~   94 (112)
T d1lgva1          63 RFSGSKSGNSASLTISGLQAE-DEADYYCSSYD   94 (112)
T ss_dssp             TEEEEEETTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             cEEEECCCCEeeEEeCcCccc-cCEEEEEeeec
Confidence            444555567899999999999 99999998764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.73  E-value=4.7e-05  Score=40.48  Aligned_cols=33  Identities=9%  Similarity=0.313  Sum_probs=27.2

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++........++|+|++++.+ |+|.|.|.+..
T Consensus        62 ~~~~~~~~~~~~~L~I~~~~~~-Dsg~YyCa~~~   94 (115)
T d1i9ea_          62 FEAEFSKSNSSFHLRKASVHWS-DSAVYFCAVSG   94 (115)
T ss_dssp             CEEECBTTTTBCCEEESSCCGG-GCEEEEEEEEE
T ss_pred             eeEEEeCcCCEEEEeccccccc-ccceecccccC
Confidence            4455556677889999999999 99999998765

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=97.72  E-value=1.6e-05  Score=41.33  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=27.0

Q ss_pred             CCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          66 GANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        66 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        15 ~~~~~v~~G~~~~l~C~~~-g~P~p~v~W~k~   45 (102)
T d1fhga_          15 ILDMEVVEGSAARFDCKVE-GYPDPEVMWFKD   45 (102)
T ss_dssp             CCCEEEETTSCEEEEEEEE-EESCCEEEEEET
T ss_pred             CCcEEEecCCcEEEEEEEE-eccCCeEEEEee
Confidence            3567888999999999986 789999999985

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.71  E-value=3.1e-05  Score=40.96  Aligned_cols=34  Identities=18%  Similarity=0.314  Sum_probs=28.9

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .++........++|.|.+++.+ |+|.|.|.+...
T Consensus        58 ~~~~~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~~   91 (110)
T d2esvd1          58 ASLIITEDRKSSTLILPHATLR-DTAVYYCIVVRS   91 (110)
T ss_dssp             CEEEECTTCSEEEEEESSCCGG-GCEEEEEEEEES
T ss_pred             ceeeecccCCeeeehhcccccC-CceEEEEEEeCC
Confidence            4566677788999999999999 999999987653

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.71  E-value=5.1e-05  Score=40.29  Aligned_cols=30  Identities=30%  Similarity=0.192  Sum_probs=24.8

Q ss_pred             EEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           8 DYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         8 ~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ........++|+|.+++.+ |+|.|.|.+..
T Consensus        71 ~~~~~~~~~~L~I~~~~~~-Dsg~Y~Ca~~~  100 (115)
T d2atpb1          71 LESSDSRRPFLSIMNVKPE-DSDFYFCATVG  100 (115)
T ss_dssp             EESTTSSSCEEEECSCCGG-GCEEEEEEEEC
T ss_pred             EEeCCCCeEEEeecccCCC-CCcEEEEeEcC
Confidence            3445566789999999999 99999998764

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.70  E-value=7.5e-05  Score=39.76  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=26.3

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +..+.....++|+|.+++.+ |+|.|.|.+...
T Consensus        67 ~~~~~~~~~~~L~I~~~~~~-Dsg~YyCa~~~~   98 (116)
T d1tvda_          67 VKHILTQKAFHLVISPVRTE-DSATYYCAFTLP   98 (116)
T ss_dssp             EEEEGGGTEEEEEESSCCGG-GCEEEEEEEECT
T ss_pred             EEecCceeEEeeeecCcccc-ccccceeeEecC
Confidence            34455667789999999999 999999987754

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.70  E-value=1.9e-05  Score=40.73  Aligned_cols=31  Identities=16%  Similarity=0.246  Sum_probs=27.0

Q ss_pred             CCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          66 GANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        66 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        11 ~~~~~v~~g~~v~l~c~v~-g~P~p~v~W~k~   41 (98)
T d1g1ca_          11 IQSQTVGQGSDAHFRVRVV-GKPDPECEWYKN   41 (98)
T ss_dssp             CCCEEEETTSCEEEEEEEE-EESCCEEEEEET
T ss_pred             CCcEEEcCCCcEEEEEEEE-EecCCeEEEEeC
Confidence            3567889999999999985 899999999975

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.66  E-value=1.6e-05  Score=41.90  Aligned_cols=33  Identities=18%  Similarity=0.234  Sum_probs=26.9

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++......+.++|+|++++.+ |+|.|.|.+..
T Consensus        60 ~rfs~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~   92 (106)
T d1i8ka_          60 SRFSSSGTGTDFVFTIENTLSE-DVGDYYCLQSF   92 (106)
T ss_dssp             TTEEEEEETTEEEEEESSCCGG-GCEEEEEEECS
T ss_pred             cceeEeCCCCeeeecccCCccc-cCEEEeEecCc
Confidence            4555555667899999999999 99999997654

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.65  E-value=1.3e-05  Score=40.85  Aligned_cols=30  Identities=33%  Similarity=0.486  Sum_probs=26.1

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        13 ~~~~~~~G~~v~l~C~~~-g~P~p~i~W~k~   42 (91)
T d1cs6a3          13 ADTYALTGQMVTLECFAF-GNPVPQIKWRKL   42 (91)
T ss_dssp             SEEEEETTCCEEEECEEE-EESCCEEEEEEC
T ss_pred             CcEEEecCCcEEEEEEEE-EccCCEEEEEec
Confidence            456788999999999996 899999999974

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.63  E-value=6.1e-05  Score=39.99  Aligned_cols=32  Identities=25%  Similarity=0.447  Sum_probs=26.5

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ....+.....++|+|.+++.+ |+|.|.|.+..
T Consensus        56 ~~~~~~~~~~~~L~I~~l~~~-Dsa~YyCa~~~   87 (113)
T d1vesa_          56 VETVNKGSKSFSLRISDLRVE-DSGTYKCQAFY   87 (113)
T ss_dssp             EEEEETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             cceeECCCCceeeeecccccC-CcceEeeeeec
Confidence            344556677899999999999 99999999865

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=2.2e-05  Score=39.94  Aligned_cols=31  Identities=16%  Similarity=0.120  Sum_probs=25.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +...+.+|+.+.|+|.+..+.|...+.|+++
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~   38 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKD   38 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEET
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEe
Confidence            4467889999999999876666778999986

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=4.9e-05  Score=38.46  Aligned_cols=28  Identities=36%  Similarity=0.528  Sum_probs=24.1

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        11 ~~~~~G~~v~l~C~~~-g~p~p~i~W~~~   38 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTT-GCESPFFSWRTQ   38 (90)
T ss_dssp             EEEETTSCEEEEEEEE-SCSSCEEEEEET
T ss_pred             EEEECCCEEEEEEecc-CCCCceEEEEec
Confidence            3556899999999995 899999999874

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.62  E-value=6.4e-05  Score=37.75  Aligned_cols=37  Identities=14%  Similarity=0.176  Sum_probs=26.1

Q ss_pred             CCEEe-CCCCceecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          60 PPKIS-PGANPVATEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        60 ~p~i~-~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      +|.|. ......+.+|+.+.|.|.+. +.|.+ .+.|+++
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~-~~~~~~~~~w~~~   42 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGT-HSPESDSIQWFHN   42 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECS-SCCCTTCCEEEET
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEe-eccceeEEEeecc
Confidence            44552 22456899999999999986 45544 6788765

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.61  E-value=1.3e-05  Score=40.84  Aligned_cols=30  Identities=23%  Similarity=0.473  Sum_probs=26.1

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|+++.|.|.+. |.|.|.+.|+++
T Consensus         7 ~~~~v~~G~~~~l~C~~~-g~P~p~v~W~~~   36 (91)
T d1tnna_           7 RSMTVYEGESARFSCDTD-GEPVPTVTWLRK   36 (91)
T ss_dssp             CCEECSSSSCCCEEEECC-CSSCCCCEEESS
T ss_pred             cCEEEeCCCcEEEEEEEE-EEeCCeEEEEEe
Confidence            457889999999999985 899999999974

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.60  E-value=8.3e-05  Score=39.21  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=27.3

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .||........++|.|.+++.+ |+|.|.|.+...
T Consensus        58 ~rf~~~~~~~~~~L~I~~l~~~-Dsa~YyCA~~~~   91 (108)
T d1nfde1          58 ERFSGSTSGTTATLTISGAQPE-DEAAYYCLSSYG   91 (108)
T ss_dssp             TTEEEEEETTEEEEEETTCCGG-GCSEEEEEEEET
T ss_pred             ceeeecCCCCEeeeeEcCcccc-CCceEEEEeecC
Confidence            3555555567889999999999 999999987653

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.60  E-value=1.5e-05  Score=40.57  Aligned_cols=28  Identities=21%  Similarity=0.566  Sum_probs=24.7

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        13 ~~v~~G~~~~l~C~~~-g~P~p~v~W~~~   40 (89)
T d1biha4          13 IVVKQGQDVTIPCKVT-GLPAPNVVWSHN   40 (89)
T ss_dssp             EEECTTSCEEEECEEE-EESCCCCEEEET
T ss_pred             EEEeCCCeEEEEEEEE-EeCCCEEEEEeC
Confidence            4678899999999985 899999999975

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.1e-05  Score=41.12  Aligned_cols=38  Identities=13%  Similarity=0.124  Sum_probs=28.4

Q ss_pred             CCCeEEEEEccceeeccCe-EEEEEEEECCCCCeeeEeeEEEE
Q psy5866          12 DSGRYDLIISNASFERDNG-KFECRLKAAGSGQDLHSQVYTVT   53 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G-~y~C~~~~~~~~~~~~~~~~~l~   53 (98)
                      ..+...|.|.+++.. |+| .|+|.|.|.   .+.....+.|.
T Consensus        52 ~~~~~~L~i~~~~~~-d~G~~Y~C~a~N~---~G~~~~s~~l~   90 (92)
T d2ifga1          52 GLPSLGLTLANVTSD-LNRKNVTCWAEND---VGRAEVSVQVN   90 (92)
T ss_dssp             CSSEEEEEEESCCST-TTTCCEEECCEET---TEECCEEECCC
T ss_pred             eccceeEEEcccccc-ccceEEEEEEEcC---CCEEEEEEEEE
Confidence            455678999999999 999 699999996   34444444443

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.60  E-value=3e-05  Score=41.19  Aligned_cols=30  Identities=17%  Similarity=0.388  Sum_probs=26.0

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .......++|+|.+++.+ |+|.|.|.+...
T Consensus        65 ~~~~~~~~sL~i~~~~~~-Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          65 LDADTKQSSLHITASQLS-DSASYICVVSDR   94 (114)
T ss_dssp             BCSSSSEEEEEECSCCGG-GCSEEEEEEECS
T ss_pred             ecCcccccccEEcccChh-hCcccceeeecC
Confidence            345667899999999999 999999998864

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=7.6e-05  Score=39.07  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=27.9

Q ss_pred             CEEeCCCCceecCCCcEEEEEEcCCCCC---CCeEEEEec
Q psy5866          61 PKISPGANPVATEGRAIELVCSTSGGSP---DPQISVTLQ   97 (98)
Q Consensus        61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~   97 (98)
                      .++....+..+.+|+++.|.|.+. |.|   .|.+.|+++
T Consensus         6 ~Fv~~P~~~~v~~G~~v~l~C~v~-g~p~~~~p~v~W~k~   44 (110)
T d2avga1           6 LFVMRPQDGEVTVGGSITFSARVA-GASLLKPPVVKWFKG   44 (110)
T ss_dssp             SEEECCCCEEEETTSEEEEEEEEE-CCSCSSSCEEEEECS
T ss_pred             EeEECCCeEEEECCCCEEEEEeec-CCCCCCCCEEEEEeC
Confidence            345444567899999999999986 566   578999874

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.59  E-value=1.9e-05  Score=40.60  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..|.|..+... |+|.|+|.|.|.
T Consensus        62 ~~l~i~~~~~~-d~G~Y~C~a~N~   84 (97)
T d1cs6a1          62 DLVISNPVKAK-DAGSYQCVATNA   84 (97)
T ss_dssp             EEEEESCCHHH-HCEEEEEEEEET
T ss_pred             eEEEEeccccc-CCEEEEEEEEEC
Confidence            46888999999 999999999996

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.59  E-value=1e-05  Score=40.82  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=26.1

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      ..|.|.+++.+ |+|.|+|++.+.     ..+..+.|+|+
T Consensus        51 ~~l~i~~v~~~-dsG~Y~C~a~ns-----~~S~~v~l~V~   84 (85)
T d2fcba1          51 QPSYRFKANNN-DSGEYTCQTGQT-----SLSDPVHLTVL   84 (85)
T ss_dssp             SSEEEEECCGG-GCEEEEEECTTS-----BCCCCEEEEEE
T ss_pred             cceEEeecccc-CCcEEEEECCCC-----cccccEEEEEE
Confidence            35899999999 999999998753     33455667764

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.59  E-value=6e-05  Score=39.93  Aligned_cols=34  Identities=21%  Similarity=0.343  Sum_probs=28.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .+.........++|+|++++.+ |+|.|.|.+...
T Consensus        61 ~~~~~~~~~~~~~L~i~~~~~~-Dsg~YyCa~~~~   94 (113)
T d2bnqd1          61 LNASLDKSSGRSTLYIAASQPG-DSATYLCAVRPT   94 (113)
T ss_dssp             EEEEEETTTTEEEEEESSCCGG-GCEEEEEEEEES
T ss_pred             eeeeeccCCCEEEeeeecCCCC-CCcEEeEeEecC
Confidence            3445667788999999999999 999999998764

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.59  E-value=3e-05  Score=40.90  Aligned_cols=33  Identities=18%  Similarity=0.211  Sum_probs=27.6

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++........++|+|+++..+ |+|.|.|.+..
T Consensus        60 ~rfs~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~   92 (107)
T d1ospl1          60 SRFSGSDSGKDYTLSITSLQTE-DVATYFCQQYW   92 (107)
T ss_dssp             TTEEEECSSSSEEEEESSCCGG-GCSEEEEEECS
T ss_pred             cccceecCCCeEEeEEcccccc-cCCcEEEeecc
Confidence            4566666777899999999999 99999997654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.59  E-value=8.2e-05  Score=39.35  Aligned_cols=33  Identities=15%  Similarity=0.200  Sum_probs=26.7

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ++....+...++|.|.+++.+ |+|.|.|.+...
T Consensus        60 ~~~~~~~~~~~~L~I~~l~~~-DsavYyCA~~~~   92 (109)
T d1w72l1          60 RFSGSNSGNMATLTISRVEAG-DEADYYCQVWDS   92 (109)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEEEET
T ss_pred             eEeeecCCCccceEEeeeccC-CCEEEEEEecCC
Confidence            344445567889999999999 999999987654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.2e-05  Score=40.90  Aligned_cols=30  Identities=17%  Similarity=0.288  Sum_probs=24.8

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      ....+.+|+++.|.|.+. |.| .|.+.|++.
T Consensus        11 ~~~~v~~G~~v~L~C~v~-g~p~~P~v~W~k~   41 (104)
T d2aw2a1          11 SEHSILAGDPFELECPVK-YCANRPHVTWCKL   41 (104)
T ss_dssp             EEEEEETTSCEEEEEEEE-CSSSCCEEEEEEE
T ss_pred             CeEEEeCCCeEEEEEEEE-eeCCCCEEEEEec
Confidence            346788999999999997 566 689999874

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=5.6e-05  Score=39.06  Aligned_cols=30  Identities=13%  Similarity=0.178  Sum_probs=26.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+. |.|.+.+.|+++
T Consensus         8 ~~~~v~~G~~~~l~C~v~-g~p~p~v~W~k~   37 (101)
T d2cqva1           8 EDQKVRAGESVELFGKVT-GTQPITCTWMKF   37 (101)
T ss_dssp             CSEEEETTCCEEEEEEEE-SSSSCEEEEEES
T ss_pred             CcEEEeCCCcEEEEEEEE-ecCCCEEEEEeC
Confidence            457889999999999985 799999999975

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.55  E-value=5.1e-05  Score=38.63  Aligned_cols=30  Identities=23%  Similarity=0.298  Sum_probs=26.5

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus         9 ~~~~v~~G~~~~l~C~v~-g~p~p~v~W~~~   38 (92)
T d1epfa2           9 TPQEFKEGEDAVIVCDVV-SSLPPTIIWKHK   38 (92)
T ss_dssp             SSEECCTTSCEEECCEEE-CSSCCEEEEEET
T ss_pred             CCEEEeCCCcEEEEEEEe-ecCCCeEEEEEc
Confidence            457899999999999985 789999999975

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.55  E-value=0.00024  Score=37.36  Aligned_cols=34  Identities=21%  Similarity=0.163  Sum_probs=28.4

Q ss_pred             eeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           4 VEIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         4 ~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ...+..+.....+.|+|.+++.+ |+|.|.|....
T Consensus        62 ~~~~~~~~~~~~~~L~i~~l~~~-Dsa~YyCA~~~   95 (111)
T d1cd0a_          62 RFAGSIDRSSNSASLTISGLKTE-DEADYYCQSYD   95 (111)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             ceeEeecCCCCccccccccCCcc-cCcEEEEeecc
Confidence            34556677788999999999999 99999998654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.55  E-value=6.4e-05  Score=39.99  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=26.8

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      +++..+.....+.|.|.+++++ |+|.|.|.+...
T Consensus        62 ~~~~~~~~~~~~~L~I~~~~~~-Dsg~YyCa~~~~   95 (115)
T d1lp9e1          62 FHATLHKSSSSFHLQKSSAQLS-DSALYYCALFLA   95 (115)
T ss_dssp             CEECCBGGGTBCCEEESSCCGG-GCEEEEEEEEEC
T ss_pred             eeeeccCCCCeEEeeccccccc-cCccceEEEEcC
Confidence            3444455566788999999999 999999987653

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=0.00011  Score=37.50  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=28.2

Q ss_pred             CCCCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          58 PQPPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        58 ~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+|.|.. .+..+.+|+++.|+|.+. + +.+.+.|+++
T Consensus         3 v~~P~i~~-~~~~v~~g~~v~l~C~~~-~-~~~~v~W~~~   39 (96)
T d1l6za2           3 VTQPFLQV-TNTTVKELDSVTLTCLSN-D-IGANIQWLFN   39 (96)
T ss_dssp             CCCCCEEC-SCSEECTTSCEEEEECCC-C-SSCEEEEEET
T ss_pred             CCCCeEEc-CceEEeCCCeEEEEEccC-C-CCCCEEEEEe
Confidence            34566654 457899999999999874 3 5589999975

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.54  E-value=5.2e-05  Score=39.86  Aligned_cols=32  Identities=22%  Similarity=0.186  Sum_probs=26.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ++....+...++|+|.++..+ |+|.|.|.+..
T Consensus        60 ~~~~~~s~~~~~L~I~~~~~~-DsA~YyCa~~~   91 (106)
T d1a0ql1          60 RFRGSGSGRDYSFSISNLEPE-DIATYYCLQYY   91 (106)
T ss_dssp             TEEEEEETTEEEEEECSCCGG-GCSEEEEEECS
T ss_pred             ceEeecCCCEeeeEehhhccc-CCEeEEEEEeC
Confidence            455555667899999999999 99999998643

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=3.5e-05  Score=39.02  Aligned_cols=29  Identities=24%  Similarity=0.535  Sum_probs=25.5

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus         5 ~~~v~~G~~~~l~C~v~-g~p~p~v~W~k~   33 (91)
T d1rhfa1           5 KLTVSQGQPVKLNCSVE-GMEEPDIQWVKD   33 (91)
T ss_dssp             EEEEETTCCEEEEEEEE-SCSSCCEEEEET
T ss_pred             eEEEcCCCeEEEEEEEE-ecCCceEEEEEe
Confidence            46788999999999985 889999999975

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.52  E-value=2.4e-05  Score=40.89  Aligned_cols=31  Identities=23%  Similarity=0.255  Sum_probs=27.1

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+..+.|.|.+.|+++
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~   42 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLN   42 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEES
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEe
Confidence            3468999999999999867899999999985

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=8.1e-05  Score=39.44  Aligned_cols=33  Identities=21%  Similarity=0.179  Sum_probs=27.3

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .||....+...+.|.|.+++.+ |+|.|.|....
T Consensus        62 ~rf~~s~~~~~~~L~I~~~~~~-Dsa~YyCa~~~   94 (110)
T d1oaql_          62 ARFSGSLIGNKAALTITGAQTE-DEAIYFCALWY   94 (110)
T ss_dssp             TTEEEEEETTEEEEEEESCCGG-GCEEEEEEEEE
T ss_pred             eeeeecccccceeeecCCCCcc-ccEeEEEEccc
Confidence            3555555667899999999999 99999998765

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.51  E-value=0.00023  Score=37.42  Aligned_cols=33  Identities=12%  Similarity=0.102  Sum_probs=27.5

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .....+.....++|.|.+++.+ |+|.|.|.+..
T Consensus        61 ~~~~~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~   93 (111)
T d1bd2d1          61 FTVFLNKSAKHLSLHIVPSQPG-DSAVYFCAAME   93 (111)
T ss_dssp             EEEEEETTTTEEEEEESSCCGG-GCEEEEEEEES
T ss_pred             ceEEEEccCCEEEEEECCCccc-ccEEEEeeccC
Confidence            3445567778999999999999 99999997764

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=7.3e-05  Score=39.78  Aligned_cols=30  Identities=20%  Similarity=0.351  Sum_probs=25.3

Q ss_pred             EEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           8 DYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         8 ~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+.+...++|.|.+++.+ |+|.|.|.+..
T Consensus        67 ~~~~~~~~~~L~I~~l~~~-Dsa~YyCa~~~   96 (117)
T d1dqta_          67 SGTFNESRVNLTIQGLRAV-DTGLYLCKVEL   96 (117)
T ss_dssp             EEEEETTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EEeCCCCEEEEEhhcCccc-cCEeEEEEEec
Confidence            3455567889999999999 99999998765

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.50  E-value=5.8e-05  Score=40.02  Aligned_cols=33  Identities=18%  Similarity=0.472  Sum_probs=27.3

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++..+.....++|+|.+++.+ |+|.|.|.+..
T Consensus        62 ~~~~~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~   94 (115)
T d1fo0a_          62 YSLNFQKPKSSIGLIITATQIE-DSAVYFCAMRG   94 (115)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             eEEEEeccCCEEEEEECCCCcc-ccccccceeec
Confidence            4455556677899999999999 99999998765

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.50  E-value=6.5e-05  Score=38.55  Aligned_cols=30  Identities=13%  Similarity=0.155  Sum_probs=26.5

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|+++.|.|.+. |.|.|.+.|+++
T Consensus        11 ~~~~~~~G~~v~l~C~~~-g~P~~~v~W~k~   40 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMYG-SNPMGYPNYFKN   40 (97)
T ss_dssp             CSEEEETTSCEEEEEEEE-CSSCCCCEEEET
T ss_pred             CCEEEecCCeEEEEEEEE-EecCCEEEEEEe
Confidence            567889999999999985 789999999975

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=5.8e-05  Score=40.63  Aligned_cols=27  Identities=22%  Similarity=0.460  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .....++|+|.+++.+ |+|.|.|.+..
T Consensus        77 ~~~~~~~L~I~~~~~~-Dsg~YyCa~~~  103 (122)
T d1nezg_          77 DTNNKYVLTLNKFSKE-NEGYYFCSVIS  103 (122)
T ss_dssp             ETTTEEEEEESSCCGG-GCEEEEEEEEE
T ss_pred             CCCCEeEEEEcccccC-CCEEEEeeEeC
Confidence            3456789999999999 99999998865

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.49  E-value=6.5e-05  Score=39.28  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=25.1

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ++........++|+|.+++.+ |+|.|.|...
T Consensus        59 ~f~~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~   89 (104)
T d1yqvl1          59 RFSGSGSGTSYSLTISSMETE-DAATYYCQQW   89 (104)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEEC
T ss_pred             eEEEecCCCEEEEEecccCcc-cCCeEEEEec
Confidence            344445567899999999999 9999999754

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.48  E-value=0.00011  Score=38.94  Aligned_cols=30  Identities=27%  Similarity=0.553  Sum_probs=25.4

Q ss_pred             EEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           8 DYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         8 ~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+.....++|+|++++.+ |+|.|.|.+..
T Consensus        57 ~~~~~~~~~~L~I~~l~~~-Dsa~YyCA~~~   86 (112)
T d1sq2n_          57 TVNSGSKSFSLRINDLTVE-DGGTYRCGLGV   86 (112)
T ss_dssp             EEETTTTEEEEEECSCCGG-GCEEEEEEECB
T ss_pred             EEecCCceeeeEecCCcCc-cCEEEeEEEec
Confidence            4455667899999999999 99999998765

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.48  E-value=1.2e-05  Score=42.77  Aligned_cols=29  Identities=28%  Similarity=0.497  Sum_probs=25.2

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+.+|+.+.|.|.+..|.|.|.+.|++.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~   40 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKR   40 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEE
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeC
Confidence            35679999999999766899999999974

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=5.9e-05  Score=38.91  Aligned_cols=31  Identities=23%  Similarity=0.456  Sum_probs=26.3

Q ss_pred             CCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          66 GANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        66 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+...+.+|+++.|.|.+. |.|.|.+.|++.
T Consensus         8 ~~~v~v~~G~~v~l~C~~~-g~p~p~v~W~~~   38 (102)
T d1f97a1           8 QSDVQVPENESIKLTCTYS-GFSSPRVEWKFV   38 (102)
T ss_dssp             CSEEEEETTCCEEEECEEE-SCSSEEEEEEEE
T ss_pred             CCcEEEeCCCEEEEEEEcC-CCCCCeEEEEec
Confidence            3457889999999999986 789999999864

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.47  E-value=0.00026  Score=37.25  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=23.3

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ......++|+|.+++.+ |+|.|.|.+..
T Consensus        67 ~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~   94 (112)
T d1kgce1          67 RPEGSVSTLKIQRTQQE-DSAVYLCASSL   94 (112)
T ss_dssp             CTTSSCEEEEESSCCGG-GCEEEEEEEES
T ss_pred             CCcCCEEEEEECCCCcC-CCEEEEEeeeC
Confidence            34455689999999999 99999998754

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.47  E-value=4.7e-05  Score=40.06  Aligned_cols=33  Identities=18%  Similarity=0.269  Sum_probs=27.0

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++.......+++|+|.+++.+ |+|.|.|.+..
T Consensus        60 ~~fs~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~   92 (107)
T d1j1pl_          60 SRFSGSGSGTDFTLSINSVETE-DFGMYFCQQAN   92 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGG-GCEEEEEEECS
T ss_pred             CcceecccCCEEEEEEcccCcC-CCEEEEEEcCC
Confidence            3556666677899999999999 99999997643

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=6.4e-05  Score=39.10  Aligned_cols=28  Identities=18%  Similarity=0.277  Sum_probs=24.3

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+..|+.+.|.|.+. |.|.|.+.|+++
T Consensus        12 i~v~~G~~v~l~C~v~-g~P~p~i~W~~~   39 (107)
T d1iray3          12 MEVDLGSQIQLICNVT-GQLSDIAYWKWN   39 (107)
T ss_dssp             EECCTTCCEEEEEEEE-ECTTCEEEEEET
T ss_pred             EEEeCCCEEEEEEEec-cCCCCeEEEEEC
Confidence            4577899999999996 789999999874

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=5e-05  Score=39.96  Aligned_cols=38  Identities=24%  Similarity=0.389  Sum_probs=29.7

Q ss_pred             CCCCEEeCCCCceecCCCcEEEEEEcCCCCCCC--eEEEEec
Q psy5866          58 PQPPKISPGANPVATEGRAIELVCSTSGGSPDP--QISVTLQ   97 (98)
Q Consensus        58 ~~~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~   97 (98)
                      |..|.|..  ...+.+|+.++|+|.+.+++|.+  .+.|+++
T Consensus         2 P~~P~I~~--~~~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g   41 (109)
T d1vcaa1           2 PKDPEIHL--SGPLEAGKPITVKCSVADVYPFDRLEIDLLKG   41 (109)
T ss_dssp             CSCCEEEE--SSCEETTSCEEEEEEEEEEBSGGGEEEEEEET
T ss_pred             CCCCEEec--CCCccCCCeEEEEeEeCCcCCCCceEEEEecc
Confidence            56677753  23578999999999999888865  6889874

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.46  E-value=8.2e-05  Score=39.49  Aligned_cols=32  Identities=16%  Similarity=0.284  Sum_probs=26.3

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      .++....++..++|+|++++.+ |+|.|.|...
T Consensus        66 ~~~s~~~s~~~~~L~I~~l~~~-Dsa~YyCA~~   97 (113)
T d1q9ra1          66 DRFTGSGSGTDFTLTITSVQAE-DLAVYYCKQS   97 (113)
T ss_dssp             TTEEEEEETTEEEEEESSCCGG-GCEEEEEEEC
T ss_pred             ccEEEeCCCCeEeEEecccccC-CCeEEEeccc
Confidence            3455556678899999999999 9999999754

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=7.5e-05  Score=38.57  Aligned_cols=30  Identities=20%  Similarity=0.434  Sum_probs=26.0

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +...+.+|+++.|.|.+. |.|.|.+.|+++
T Consensus        12 ~~v~v~~g~~v~L~C~~~-g~p~p~v~W~~~   41 (105)
T d1nbqa1          12 PEVRIPENNPVKLSCAYS-GFSSPRVEWKFD   41 (105)
T ss_dssp             SBCCEETTCCCEEECEEE-SCSSEEEEEEEE
T ss_pred             CeEEEeCCCeEEEEEEeC-CCCCCeeEEEee
Confidence            456788999999999986 789999999874

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.45  E-value=4.5e-05  Score=40.14  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=26.2

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      .++....+...+.|+|++++.+ |+|.|.|.+.
T Consensus        61 ~~~s~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~   92 (108)
T d2fx7l1          61 DRFSGSGSGTDFTLTISRLEPE-DFAVYYCQQY   92 (108)
T ss_dssp             TTEEEEEETTEEEEEESSCCGG-GCSEEEEEEC
T ss_pred             cceeeecCCCEEEEEehHheec-ccEEEeeecC
Confidence            3455555667899999999999 9999999764

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=4.5e-05  Score=40.06  Aligned_cols=32  Identities=13%  Similarity=0.230  Sum_probs=26.3

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      .++....+...+.|+|++++.+ |+|.|.|...
T Consensus        59 ~~f~~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~   90 (106)
T d1lk3l1          59 ARFSGSGSGTDFTLTIDPVEAD-DTAIYFCQQS   90 (106)
T ss_dssp             TTEEEEEETTEEEEEESSCCGG-GCEEEEEEEC
T ss_pred             CceeeecCCCEEEeEECCcChh-hCCCcccccc
Confidence            4555666677899999999999 9999999654

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=0.00016  Score=36.92  Aligned_cols=29  Identities=21%  Similarity=0.318  Sum_probs=23.8

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEe
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTL   96 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~   96 (98)
                      ....+.+|+.+.|+|.+. |.| .+.+.|++
T Consensus         8 ~~~~v~~G~~~~l~C~v~-g~p~~~~v~W~~   37 (97)
T d1epfa1           8 SQGEISVGESKFFLCQVA-GDAKDKDISWFS   37 (97)
T ss_dssp             SSEEEETTCCEEEEEEEC-CCSCCCEEEEEC
T ss_pred             CCEEEccCCcEEEEEEEE-eccCCCEEEEEE
Confidence            346788999999999986 566 57999997

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.45  E-value=0.00016  Score=37.62  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=27.0

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++....+...+.|+|.+++.+ |+|.|.|.+..
T Consensus        57 ~~~~~~~~~~~~~L~I~~l~~~-Dsa~YyCA~~~   89 (103)
T d8faba1          57 QRFSSSTSGTTVTLTISGVQAE-DEADYYCQAWD   89 (103)
T ss_dssp             TTEEEEEETTEEEEEETTCCGG-GCEEEEEEEEE
T ss_pred             CcEEECCCCCccCceEcCcchh-HCceEEeeecC
Confidence            3455566677899999999999 99999997664

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00013  Score=37.44  Aligned_cols=30  Identities=20%  Similarity=0.274  Sum_probs=24.8

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+. |.|.| .+.|++.
T Consensus        10 ~~~~v~~G~~v~l~C~v~-g~P~p~~i~W~k~   40 (101)
T d3b5ha1          10 SSEHINEGETAMLVCKSE-SVPPVTDWAWYKI   40 (101)
T ss_dssp             SEEEECTTSCEEEEEECC-CSSCCCEEEEEEC
T ss_pred             CcEEECcCCeEEEEEEEE-ecCCeeEEEEEec
Confidence            456789999999999986 67766 6999874

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00011  Score=38.12  Aligned_cols=33  Identities=18%  Similarity=0.162  Sum_probs=25.1

Q ss_pred             EEEEEccceeeccCe-EEEEEEEECCCCCeeeEeeEEE
Q psy5866          16 YDLIISNASFERDNG-KFECRLKAAGSGQDLHSQVYTV   52 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G-~y~C~~~~~~~~~~~~~~~~~l   52 (98)
                      ..|+|.+++.. |.| .|+|.|.|.   .+..+..+.|
T Consensus        70 ~~L~I~~v~~~-D~g~~Y~C~A~N~---~G~~~~~i~L  103 (107)
T d1iray3          70 TVLNISEIESR-FYKHPFTCFAKNT---HGIDAAYIQL  103 (107)
T ss_dssp             EEEEESSCCGG-GGSSCEEEEEECS---SCEEEEEEEE
T ss_pred             EEEEEeecchH-HCCcEEEEEEEeC---CCeEEEEEEE
Confidence            47999999999 999 599999995   3444444444

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3.2e-05  Score=41.24  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=26.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+. |.|.|.+.|++.
T Consensus        17 ~~v~v~~G~~v~L~C~v~-G~P~p~i~W~~~   46 (130)
T d1gxea_          17 DTIVVVAGNKLRLDVPIS-GDPAPTVIWQKA   46 (130)
T ss_dssp             CEEEESSSSCCCCEEECC-SBSCCEEEEEEE
T ss_pred             CCEEEEcCCeEEEEEEEE-EecCCeEEEeeC
Confidence            456899999999999986 899999999874

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.43  E-value=5.2e-05  Score=39.96  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+|.....+..+.|+|.+++++ |++.|.|.+..
T Consensus        60 ~rfs~~~~~~~~~L~I~~~~~~-DsA~YyCa~~~   92 (107)
T d1mexl1          60 DRFTGSGSGTDFTLTINNVQSE-DLAEYFCQQYN   92 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGG-GCSEEEEEECS
T ss_pred             CCeeecCCCCeeeeeechhhee-cceeEEEeECC
Confidence            3455555677899999999999 99999997643

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.43  E-value=0.00016  Score=38.80  Aligned_cols=31  Identities=19%  Similarity=0.252  Sum_probs=25.5

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +..+.....+.|+|.+++.+ |+|.|.|....
T Consensus        70 ~s~~~~~~~~~L~I~~l~~~-Dsa~YyCA~~~  100 (120)
T d1ypzf1          70 ASKNPSASTSILTIYSLEEE-DEAIYYCSYGE  100 (120)
T ss_dssp             EEECCTTTEEEEEECSCCGG-GCSEEEEEECC
T ss_pred             cccccccccccccccccccc-cceeEEEEEcC
Confidence            34456677899999999999 99999997654

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.42  E-value=5.7e-05  Score=39.67  Aligned_cols=33  Identities=15%  Similarity=0.295  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++..+.+...++|+|.+++.+ |+|.|.|.+..
T Consensus        60 ~~~~~~~~~~~~~L~I~~l~~~-DSa~YyCa~~~   92 (107)
T d1kcvl1          60 DRFTGSGSATDFTLTISSVQAD-DDADYYCGQSY   92 (107)
T ss_dssp             TTEEEEEETTEEEEEESSCCGG-GCEEEEEEECS
T ss_pred             ceEEeeccCCeeecEEHhheec-CCceEEEEecC
Confidence            3455555677899999999999 99999997643

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.41  E-value=5e-05  Score=39.94  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=27.3

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++....++..+.|+|++++.+ |+|.|.|.+..
T Consensus        59 ~~f~~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~   91 (106)
T d1op3k1          59 SRFSGSGSGTEFTLTISGLQFD-DFATYHCQHYA   91 (106)
T ss_dssp             TTEEEEEETTEEEEEEESCCGG-GCSEEEEEEEC
T ss_pred             CceeeeccCCEEEEEEcccccc-CCCcEeeeeCC
Confidence            3555666677899999999999 99999998654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.41  E-value=5.6e-05  Score=39.89  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=25.5

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ++........++|.|++++.+ |+|.|.|.+..
T Consensus        61 ~~~~~~~~~~~~L~I~~l~~~-Dsa~YyCa~~~   92 (107)
T d1c5cl1          61 RFSGSRSGSDYSLTISSLESE-DFADYYCLQYA   92 (107)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCSEEEEEECS
T ss_pred             ceEecccCCEEEEEEhhhccc-CCeEEEEecCc
Confidence            344445566899999999999 99999997653

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.37  E-value=7.7e-05  Score=37.90  Aligned_cols=30  Identities=20%  Similarity=0.221  Sum_probs=24.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      .+..+.+|+.+.|.|.+. |.|.| .+.|+++
T Consensus        10 ~~~~v~~g~~~~l~C~~~-g~p~p~~v~W~~~   40 (94)
T d1biha1          10 AEVLFRENNPTVLECIIE-GNDQGVKYSWKKD   40 (94)
T ss_dssp             SEEEEETTSCEEECCCEE-SCCSSCEEEEEES
T ss_pred             CcEEEeCCCeEEEEEEec-CCCCeeEEEEEee
Confidence            456789999999999986 56655 7999975

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.35  E-value=0.00012  Score=38.63  Aligned_cols=33  Identities=15%  Similarity=0.248  Sum_probs=27.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++........++|.|++++.+ |+|.|.|.+..
T Consensus        64 ~~~~~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~   96 (111)
T d1j05a_          64 VRFSGTGSRTDFTLIIDPVEAD-DVATYYCQQTN   96 (111)
T ss_dssp             TTEEEECSSSEEEEEESSCCGG-GCEEEEEEECS
T ss_pred             CcEEEecCCCEEEEEEcccccc-cCccEEEeecC
Confidence            3556677778899999999999 99999997653

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.35  E-value=6.4e-05  Score=38.69  Aligned_cols=28  Identities=36%  Similarity=0.693  Sum_probs=24.2

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+..|+++.|.|.+. |.|.|.+.|+++
T Consensus        15 ~t~~~G~~v~l~C~~~-g~P~p~i~W~~~   42 (100)
T d1qz1a3          15 ATANLGQSVTLVCDAD-GFPEPTMSWTKD   42 (100)
T ss_dssp             EETTSCCCEEEEEEEE-EESCCEEEEEET
T ss_pred             EEEcCCCCEEEEEEEE-EecCCEEEEEeC
Confidence            3567899999999985 899999999974

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00013  Score=38.22  Aligned_cols=30  Identities=13%  Similarity=0.198  Sum_probs=25.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCC---CCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP---DPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~   97 (98)
                      .+..+.+|+++.|.|.+. |.|   .|.+.|+++
T Consensus         8 ~~~~v~~G~~v~l~C~v~-g~p~~~~p~v~W~k~   40 (113)
T d2dava1           8 QGGTVKVGEDITFIAKVK-AEDLLRKPTIKWFKG   40 (113)
T ss_dssp             CCCEEETTCCEEEEEEEE-CCCSSSCCEEEEEES
T ss_pred             ceEEEeCCCEEEEEEEEc-cCCCCCCCEEEEEEe
Confidence            567899999999999986 666   579999975

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.34  E-value=4.5e-05  Score=40.54  Aligned_cols=33  Identities=12%  Similarity=0.396  Sum_probs=26.1

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..........++|+|.+++++ |+|.|.|.+...
T Consensus        63 ~~~~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~~   95 (115)
T d1j8hd1          63 EAEFKKSETSFHLTKPSAHMS-DAAEYFCAVSES   95 (115)
T ss_dssp             EEECBGGGTBCCEEESSCCGG-GCEEEEEEEESS
T ss_pred             EEEECCCCCEEEEeecccccc-CCccceeeecCC
Confidence            334444566788999999999 999999998753

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00019  Score=36.50  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=25.3

Q ss_pred             CEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEE
Q psy5866          61 PKISPGANPVATEGRAIELVCSTSGGSPDPQISVT   95 (98)
Q Consensus        61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~   95 (98)
                      |.+....+..+.+|+++.|.|.+. |.|.|.+.|+
T Consensus         3 P~f~~~~~~~v~~G~~v~l~C~~~-g~p~p~~~~~   36 (96)
T d2c9aa1           3 PHFLRIQNVEVNAGQFATFQCSAI-GRTVAGDRLW   36 (96)
T ss_dssp             CEECCCCCEEECSSSCEEEEEEEE-SCCCSSCEEE
T ss_pred             CeecccCCEEEeCCCEEEEEEEEe-ecCCCcEEEE
Confidence            344334678999999999999986 7787766544

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.30  E-value=8.7e-05  Score=39.29  Aligned_cols=33  Identities=15%  Similarity=0.165  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++.....+..+.|+|++++.+ |++.|.|.+..
T Consensus        64 ~rfs~~~~~~~~~L~I~~~~~~-DsA~YyCa~~~   96 (111)
T d2gsia1          64 ARFSGSGSGTDFTLNIHPVEEE-DAATYYCSHIR   96 (111)
T ss_dssp             TTEEEEEETTEEEEEESSCCGG-GCEEEEEEECS
T ss_pred             CcEEEecCCCchhccccccccc-CCceEEEEECC
Confidence            3555555667899999999999 99999997543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.30  E-value=0.00049  Score=36.12  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=22.6

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .....++|+|.++..+ |+|.|.|.+..
T Consensus        68 ~~~~~~~L~i~~~~~~-Dsa~YyCa~~~   94 (111)
T d2esve1          68 TGGTYSTLKVQPAELE-DSGVYFCASSQ   94 (111)
T ss_dssp             TTSSSEEEEESSCCGG-GCEEEEEEEES
T ss_pred             CCCCEEEEEECCcccC-CCceEEEeeeC
Confidence            3455688999999999 99999998654

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00018  Score=37.43  Aligned_cols=26  Identities=12%  Similarity=0.217  Sum_probs=22.3

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .....|.|..+..+ |.|.|+|+|.|.
T Consensus        57 ~~~s~l~i~~~~~d-d~g~ytC~A~n~   82 (103)
T d1iama1          57 PAEVTTTVLVRRDH-HGAQFSCRTELD   82 (103)
T ss_dssp             TEEEEEEEECCSSC-SSCEEEEEEEEE
T ss_pred             cceEEEEEeeehhH-CCCEEEEEEEeC
Confidence            34567899999988 999999999996

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.30  E-value=9.2e-05  Score=38.92  Aligned_cols=31  Identities=19%  Similarity=0.228  Sum_probs=25.6

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ++.....+..+.|+|.+++.+ |+|.|.|...
T Consensus        61 ~~~~~~~~~~~~L~I~~l~~~-DsA~YyCa~~   91 (107)
T d1tjgl1          61 RFSGSGSGTEFTLTISTLRPE-DFATYYCQQL   91 (107)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCSEEEEEEC
T ss_pred             ceEEeccCCEEEEEeccceeC-cCceEEEEEC
Confidence            455555677899999999999 9999999654

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=1.6e-05  Score=40.20  Aligned_cols=30  Identities=20%  Similarity=0.296  Sum_probs=26.0

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|+.+.|.|.+. |.|.|++.|+++
T Consensus        12 ~~~~~~~G~~~~l~C~a~-G~P~P~v~W~k~   41 (84)
T d2oz4a3          12 GNWTWPENSQQTPMCQAW-GNPLPELKCLKD   41 (84)
T ss_dssp             SEEEEETTCEECCCCCCE-EESCCEEEEEET
T ss_pred             ccEEEeCCCEEEEEEEEe-EcCccEEEEEEe
Confidence            346788999999999985 899999999975

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.29  E-value=9e-05  Score=39.03  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=26.3

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++....++..+.|+|++++.+ |+|.|.|.+..
T Consensus        62 ~~fs~~~~~~~~~L~I~~l~~~-Dsa~YyCA~~~   94 (109)
T d1bwwa_          62 SRFSGSGSGTDYTFTISSLQPE-DIATYYCQQYQ   94 (109)
T ss_dssp             TTEEEEEETTEEEEEESSCCGG-GCEEEEEEECS
T ss_pred             CCEEeeCCCCEeEEEEeeceeC-cCceEEEeecC
Confidence            3455555667889999999999 99999997653

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.28  E-value=0.00011  Score=38.68  Aligned_cols=32  Identities=25%  Similarity=0.357  Sum_probs=25.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ++....+...++|+|.+++++ |+|.|.|....
T Consensus        61 rf~~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~~   92 (107)
T d1d5il1          61 RFSGSGSGQDYSLTISSLEYE-DMGIYYCLQYD   92 (107)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECS
T ss_pred             ceeecccCCEEEccccccCCc-CCEEEEeeecc
Confidence            455555567789999999999 99999997643

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.28  E-value=0.00011  Score=38.85  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=26.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ++........+.|.|++++.+ |+|.|.|.+..
T Consensus        61 ~fs~~~~~~~~~L~I~~~~~~-DSa~YyCA~~~   92 (109)
T d1mqkl_          61 RFSGSGSGTQFSLKINSLLPE-DFGSYYCQHHY   92 (109)
T ss_dssp             TEEEEEETTEEEEEESSCCGG-GCEEEEEEECS
T ss_pred             CEEEeccCCEEEEEEcccccc-CCeeEEEeeeC
Confidence            455555677899999999999 99999997654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=97.27  E-value=0.00033  Score=34.94  Aligned_cols=30  Identities=17%  Similarity=0.150  Sum_probs=22.8

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCe-EEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQ-ISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~   97 (98)
                      ....+.+|++++|+|.+. +.|.+. +.|+++
T Consensus        13 ~~~~v~~G~~vtL~C~~~-~~~~~~~~~~~~~   43 (84)
T d1fnla1          13 QWYSVLEKDSVTLKCQGA-YSPEDNSTQWFHN   43 (84)
T ss_dssp             CCSEEETTCCEEEEEECC-CBTTBCCCEEEET
T ss_pred             CCcEEeCCCeEEEEEEec-cCCCCeEEEEeee
Confidence            457899999999999986 566665 556654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.27  E-value=0.00011  Score=39.00  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=26.3

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      .+|....+...++|+|.++..+ |+|.|.|...
T Consensus        66 ~~fs~~~~~~~~~L~I~~~~~~-DsavYyCa~~   97 (113)
T d1n4xl_          66 DRFSGSGSGTDFTLKISRVEAE-DLGIYYCFQG   97 (113)
T ss_dssp             TTEEEEECSSEEEEEESSCCGG-GCEEEEEEEC
T ss_pred             CCeeeeccCCcccCccCCCCcc-cCEEEEEEEC
Confidence            4555566677899999999999 9999999644

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.26  E-value=0.00039  Score=36.68  Aligned_cols=28  Identities=11%  Similarity=0.255  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .....++|+|.++..+ |+|.|.|.+...
T Consensus        67 ~~~~~~~L~I~~~~~~-DSa~YyCa~~~~   94 (114)
T d1ogae1          67 EKKESFPLTVTSAQKN-PTAFYLCASSSR   94 (114)
T ss_dssp             SSTTBCCEEECSCCSC-CCEEEEEEEESS
T ss_pred             ccCCeEEEEECcCCcC-CceeEEEeeccC
Confidence            3455678999999999 999999976643

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=97.24  E-value=6.1e-05  Score=38.66  Aligned_cols=28  Identities=14%  Similarity=0.412  Sum_probs=24.5

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus        15 ~~v~~G~~v~l~C~~~-g~P~p~i~W~kn   42 (97)
T d3dara1          15 HAVPAANTVKFRCPAG-GNPMPTMRWLKN   42 (97)
T ss_dssp             EEECTTCCEEEECCEE-EESCCEEEEEET
T ss_pred             EEECCCCcEEEEEEEe-EECCCEEEEEEC
Confidence            4678899999999985 889999999975

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=6e-05  Score=39.64  Aligned_cols=37  Identities=22%  Similarity=0.322  Sum_probs=27.5

Q ss_pred             CEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          61 PKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        61 p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      |.|.......+.+|+.+.|.|.+.+..|.+.+.|+++
T Consensus         8 p~i~~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~   44 (115)
T d2crya1           8 PIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWK   44 (115)
T ss_dssp             CCEEEECCCCCCTTSCCCCCEEECCSSCCSEEEEESS
T ss_pred             CEEecCCCEEEecCCEEEEEEEeecCCCeeEEEEeee
Confidence            3443335567889999999999975566778999864

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00017  Score=36.19  Aligned_cols=35  Identities=14%  Similarity=0.210  Sum_probs=23.6

Q ss_pred             EEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .+.|.....+ |+|.|+|.|.|..+  ...+..+.|.|
T Consensus        50 ~~~l~~~~~~-d~G~Y~C~A~N~~G--~~~S~~~~v~V   84 (85)
T d1rhfa2          50 PSVLNVTGVT-QSTMFSCEAHNLKG--LASSRTATVHL   84 (85)
T ss_dssp             SEEEEECCCS-SCEEEEEEEEETTE--EEECCCEEEEE
T ss_pred             ceEEecCCcc-ccEEEEEEEEcCCC--cEEEEEEEEEE
Confidence            3566667788 99999999999632  23334455554

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.18  E-value=0.00029  Score=37.12  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=27.9

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++....+...+.|.|.++..+ |+|.|.|.+..
T Consensus        58 ~~~~~~~~~~~~~L~i~~~~~~-Dsa~YyCa~~~   90 (112)
T d1kgcd1          58 ASLAIAEDRKSSTLILHRATLR-DAAVYYCILPL   90 (112)
T ss_dssp             EEEEECTTSSEEEEEESSCCGG-GCEEEEEECCC
T ss_pred             cceeecccCCeeEEEEeecccc-cceeEeeeEec
Confidence            4666777778899999999999 99999997654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.17  E-value=5.6e-05  Score=39.81  Aligned_cols=30  Identities=27%  Similarity=0.347  Sum_probs=24.0

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      +....+...++|+|++++.+ |+|.|.|...
T Consensus        62 f~~~~~~~~~~L~I~~~~~~-Dsa~YyCa~~   91 (107)
T d3cx5k1          62 FSGSGSGTDYSLTISNLEPE-DIATYFCQHH   91 (107)
T ss_dssp             CCCEEETTEEEEECSCCCSC-CCSEEEEEEC
T ss_pred             EEEEccCCEEEEEEeEeeec-CCCcEEeeeC
Confidence            33344456789999999999 9999999754

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.16  E-value=0.00017  Score=38.15  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=26.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRL   36 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~   36 (98)
                      .++....+...+.|+|++++.+ |++.|.|..
T Consensus        65 ~r~~~~~s~~~~~L~Is~~~~~-DsAvYyCa~   95 (112)
T d1mjul1          65 DRFSGSGSGTAFTLRISRVEAE-DVGVYYCLQ   95 (112)
T ss_dssp             TTEEEEECSSEEEEEESSCCGG-GCEEEEEEE
T ss_pred             CcEEeecCCCEEEEEECCcccc-CCceEEEEe
Confidence            3556666778899999999999 999999954

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00019  Score=38.21  Aligned_cols=29  Identities=17%  Similarity=0.352  Sum_probs=25.1

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+.++..++|+|.+++.+ |+|.|.|.+..
T Consensus        68 ~~~~~~~~~L~I~~l~~~-Dsa~YyCa~~~   96 (118)
T d1i8lc_          68 GTSSGNQVNLTIQGLRAM-DTGLYICKVEL   96 (118)
T ss_dssp             CCBCSSEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EcCCCCEEEEEeeccccC-CCEEEEEeEec
Confidence            455677889999999999 99999998765

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.14  E-value=0.00052  Score=36.85  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=26.0

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+..+.+...+.|+|.++..+ |+|.|.|....
T Consensus        70 ~~~~~~~~~~~~L~i~~l~~~-Dsa~YyCA~~~  101 (123)
T d1hxmb1          70 EVDRIPETSTSTLTIHNVEKQ-DIATYYCALWE  101 (123)
T ss_dssp             EEEEETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EEeeeccccceeecccccccc-cCcEEEEeeeC
Confidence            334456667889999999999 99999998754

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.12  E-value=0.00015  Score=38.44  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=25.3

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRL   36 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~   36 (98)
                      .++.....+..+.|+|++++.+ |+|.|.|..
T Consensus        65 ~~fs~~~~~~~~~L~I~~~~~e-DsAvYYC~~   95 (112)
T d1ncwl1          65 DRFTGSGSGTDFTLKISRVEAE-DLGVYYCWQ   95 (112)
T ss_dssp             TTEEEEEETTEEEEEESSCCGG-GCEEEEEEE
T ss_pred             ceEEeeCCCCEEEEEECccccC-cCEeEEEEc
Confidence            3455555667899999999999 999999954

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.11  E-value=0.00039  Score=36.48  Aligned_cols=30  Identities=17%  Similarity=0.406  Sum_probs=25.0

Q ss_pred             EEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           8 DYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         8 ~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+.....+.|+|+++..+ |+|.|.|.+..
T Consensus        64 ~~~~~~~~~~L~i~~~~~~-Dsa~YyCA~~~   93 (110)
T d1ac6a_          64 TYNKEATSFHLQKASVQES-DSAVYYCALSG   93 (110)
T ss_dssp             ECBTTTTBCCEEEEEECGG-GCEEEEEEEEE
T ss_pred             eecCCCCEEeeeecCcCcC-CCcccceeecC
Confidence            3455566789999999999 99999998765

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.11  E-value=0.0002  Score=37.68  Aligned_cols=32  Identities=19%  Similarity=0.231  Sum_probs=25.8

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ++....+...++|+|.++..+ |+|.|.|....
T Consensus        61 ~~~~~~~~~~~~L~i~~l~~~-Dsa~YyCA~~~   92 (108)
T d1jhll_          61 RFSGSGSGTDFTLTISSLEPE-DFAMYICQQHN   92 (108)
T ss_dssp             TEEEEESSSEEEEEECSCCTT-CCSEEEEEECS
T ss_pred             cccccCCCCEEEeEeeeeEec-cceEEEEeeCC
Confidence            344556677899999999999 99999996543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.00017  Score=38.62  Aligned_cols=33  Identities=21%  Similarity=0.205  Sum_probs=26.5

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++........+.|.|.+++.+ |+|.|.|....
T Consensus        60 ~~fs~~~~~~~~~L~I~~~~~~-DsavYyCa~~~   92 (119)
T d1f3rb2          60 SRFSGSGSGTDYTLTISSLQPE-DVATYFCYQYN   92 (119)
T ss_dssp             TTEEEEEEBTEEEEEECSCCGG-GCSEEEEEEES
T ss_pred             eeecccCCCCEEEEEcccCccC-CCeEEEeeccC
Confidence            3455555666789999999999 99999997654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.07  E-value=0.00074  Score=35.34  Aligned_cols=26  Identities=15%  Similarity=0.369  Sum_probs=22.6

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ....++|+|.++..+ |+|.|.|.+..
T Consensus        70 ~~~~~~L~I~~~~~~-Dsa~YyCa~~~   95 (110)
T d2aq2a1          70 SQEQFSLILESATPS-QTSVYFCASGG   95 (110)
T ss_dssp             ETTEEEEEESSCCGG-GCEEEEEEEEE
T ss_pred             cCCEEEEEECCCCHh-hCEEEEEeeCC
Confidence            355789999999999 99999998765

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.04  E-value=0.00056  Score=36.06  Aligned_cols=26  Identities=19%  Similarity=0.324  Sum_probs=22.1

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ....++|+|.+++.+ |+|.|.|.+..
T Consensus        70 ~~~~~~L~I~~~~~~-Dsa~YyCa~~~   95 (113)
T d1nfdb1          70 DDYHSEMNMSALELE-DSAMYFCASSL   95 (113)
T ss_dssp             TTSCEEEECCSCCGG-GCEEECEEEES
T ss_pred             CCCeEEEEecccCcC-CceeEEEEeec
Confidence            345678999999999 99999997754

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.00  E-value=0.0017  Score=34.09  Aligned_cols=26  Identities=31%  Similarity=0.499  Sum_probs=22.4

Q ss_pred             CCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          12 DSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        12 ~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ....++|+|.+++.+ |+|.|.|.+..
T Consensus        67 ~~~~~~L~I~~~~~~-Dsa~YyCa~~~   92 (113)
T d1h5ba_          67 RARYSTLHIRDAQLE-DSGTYFCAAEA   92 (113)
T ss_dssp             SSSEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             CCceeEEEECCCCHh-HCEEEEEEecC
Confidence            345778999999999 99999998765

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.00  E-value=0.0013  Score=34.43  Aligned_cols=28  Identities=25%  Similarity=0.503  Sum_probs=23.6

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ......+.|+|.+++.+ |+|.|.|.+..
T Consensus        67 ~~~~~~~~L~i~~~~~~-Dsa~YyCa~~~   94 (113)
T d1j8he1          67 REKKERFSLILESASTN-QTSMYLCASSS   94 (113)
T ss_dssp             CSSTTBCEEEESSCCGG-GCEEEEEEEEC
T ss_pred             eccCcEeeeEeccCccC-CcccEEeeEcc
Confidence            34556688999999999 99999998865

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.98  E-value=0.00053  Score=35.96  Aligned_cols=32  Identities=28%  Similarity=0.274  Sum_probs=24.2

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ++..+.+|++++|+|..........+.|++|.
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~   37 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQI   37 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEEC
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEEC
Confidence            34678899999999986544445568999873

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.98  E-value=0.00054  Score=36.60  Aligned_cols=31  Identities=23%  Similarity=0.187  Sum_probs=25.7

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ...+.....++|.|.+++.+ |+|.|.|....
T Consensus        66 ~s~~~~~~~~~L~i~~~~~~-Dsa~YyCA~~~   96 (120)
T d1hxma1          66 GDIDIAKNLAVLKILAPSER-DEGSYYCACDT   96 (120)
T ss_dssp             EEEEGGGTEEEEEESSCCGG-GCEEEEEEEEC
T ss_pred             eeccccccceeccccccccc-CCceeecCccc
Confidence            34555667799999999999 99999998765

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0008  Score=35.46  Aligned_cols=32  Identities=22%  Similarity=0.256  Sum_probs=25.1

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      .+..+.+|++++|+|..........+.|++|.
T Consensus         8 ~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~   39 (114)
T d1akjd_           8 LDRTWNLGETVELKCQVLLSNPTSGCSWLFQP   39 (114)
T ss_dssp             CSCCCCTTCCEEEEEEECCSSCCSCEEEEEEC
T ss_pred             CcEeccCCCcEEEEEEeCCCcCCCCEEEEEEC
Confidence            45678899999999987655445568999974

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00023  Score=35.36  Aligned_cols=30  Identities=10%  Similarity=0.072  Sum_probs=19.9

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCe-EEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQ-ISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~   97 (98)
                      ....+.+|+.+.|+|.+. +.|.+. +.|+++
T Consensus         9 ~~~~v~~G~~v~L~C~~~-~~~~~~~~~~~~~   39 (82)
T d1f2qa1           9 PWNRIFKGENVTLTCNGN-NFFEVSSTKWFHN   39 (82)
T ss_dssp             SCSEEETTCCEEEECCTT-CC----CCEEEET
T ss_pred             CCeEEeCCCeEEEEEEEe-eeeeecceeeeee
Confidence            456789999999999986 566665 455553

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.93  E-value=0.00061  Score=35.80  Aligned_cols=28  Identities=14%  Similarity=0.299  Sum_probs=23.8

Q ss_pred             eCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          10 RPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        10 ~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +.+...++|+|.++..+ |+|.|.|.+..
T Consensus        66 ~~~~~~~~L~I~~~~~~-Dsa~YyCA~~~   93 (113)
T d2ntsp1          66 QFSNSRSEMNVSTLELG-DSALYLCASSL   93 (113)
T ss_dssp             ECTTSCEEEEECSCCGG-GCEEEEEEEES
T ss_pred             cCcCCeeEEEECCCCcc-cceeeeeeeeC
Confidence            45566789999999999 99999998764

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.93  E-value=3.4e-05  Score=39.93  Aligned_cols=30  Identities=13%  Similarity=0.297  Sum_probs=24.3

Q ss_pred             EeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           9 YRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         9 ~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .+.....++|+|.+++.+ |+|.|.|.+...
T Consensus        57 ~~~~~~~~~L~I~~~~~~-Dsa~YyCA~~~~   86 (96)
T d1ymmd1          57 LDTSKKSSSLLITASRAA-DTASYFCATDTT   86 (96)
T ss_dssp             CBGGGTBCCBCCSSCCST-TCSCCEEEEEET
T ss_pred             ccCcceecccCcCCCCcc-cCEEEeEeEecC
Confidence            344455678999999999 999999987653

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.86  E-value=0.0003  Score=35.87  Aligned_cols=23  Identities=13%  Similarity=0.387  Sum_probs=20.0

Q ss_pred             CCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          74 GRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ++.+.|.|.+. |.|.|.+.|+++
T Consensus        22 ~~~v~l~C~~~-g~P~p~v~W~~n   44 (97)
T d1cs6a1          22 EEKVTLTCRAR-ANPPATYRWKMN   44 (97)
T ss_dssp             CCEEEECCEEE-EESCCEEEEEET
T ss_pred             CCeEEEEEEEE-EeCCCEEEEEEe
Confidence            47899999985 789999999975

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0012  Score=33.46  Aligned_cols=28  Identities=14%  Similarity=0.206  Sum_probs=23.4

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|+.+.|.|.+.  .|.|.+.|+++
T Consensus        15 ~~~v~~G~~v~l~c~v~--~p~~~v~W~k~   42 (94)
T d1pd6a_          15 AYQVSKGHKIRLTVELA--DHDAEVKWLKN   42 (94)
T ss_dssp             EEEEETTSCEEEEEECS--SSSSCCEEEES
T ss_pred             CEEECcCCeEEEEEEEC--CCCceEEEEEc
Confidence            35788999999999973  47889999986

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00059  Score=34.94  Aligned_cols=25  Identities=36%  Similarity=0.675  Sum_probs=21.5

Q ss_pred             CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .++.++|.|.+.+++|.+.+.|+++
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n   39 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLEN   39 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEES
T ss_pred             CCCEEEEEEEECcccCCCEEEEecC
Confidence            4567899999998899999999865

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.83  E-value=0.003  Score=33.87  Aligned_cols=33  Identities=18%  Similarity=0.166  Sum_probs=26.5

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.+...|.|++++.+ |++.|.|....
T Consensus        68 ~tis~D~s~nt~~L~i~~L~~e-DtAvYYCAr~~  100 (123)
T d1mqkh_          68 FTISRDNAKNTLYLQMSSLKSE-DTAMYYCVRHE  100 (123)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EEEEecCcccccccceeeeccC-cccceeEEecC
Confidence            3444556677888999999999 99999997654

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.80  E-value=0.00069  Score=36.35  Aligned_cols=29  Identities=14%  Similarity=0.197  Sum_probs=23.8

Q ss_pred             EEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           8 DYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         8 ~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ..+.....+.|+|.+++.+ |++.|.|...
T Consensus        72 s~d~s~~~~~L~i~~l~~e-DsAvYyCAr~  100 (120)
T d2agjh1          72 TKDASKKQVVLTLTNLDPV-DTATYYCART  100 (120)
T ss_dssp             ECCTTTTEEEEEEESCCGG-GCEEEEEEEE
T ss_pred             ecccccceeeeeEEeeeec-cceEEeeEec
Confidence            3345666789999999999 9999999643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.78  E-value=0.0011  Score=34.79  Aligned_cols=31  Identities=10%  Similarity=0.095  Sum_probs=24.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|++++|+|..........+.|++|
T Consensus         6 ~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq   36 (115)
T d2atpb1           6 SSLLVQTNHTAKMSCEVKSISKLTSIYWLRE   36 (115)
T ss_dssp             SEEEECTTSCEEEEEECCSSCCSSEEEEEEE
T ss_pred             CcEEEcCCCCEEEEEEEeCCCCCCceEEEEe
Confidence            3467889999999999764445567999986

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0014  Score=33.57  Aligned_cols=25  Identities=12%  Similarity=0.522  Sum_probs=21.2

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ....+.|.+|+.. |+|.|.|...+.
T Consensus        60 ~~a~F~l~~vt~~-~~G~Y~C~y~~~   84 (99)
T d1ucta1          60 TDPEFVIDHMDAN-KAGRYQCQYRIG   84 (99)
T ss_dssp             CCCEEEECSCCGG-GCEEEEEEEEET
T ss_pred             ceEEEEecCCCHH-HCceEEEEEECC
Confidence            3456899999999 999999998764

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00092  Score=33.53  Aligned_cols=29  Identities=24%  Similarity=0.359  Sum_probs=24.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|+.+.|.|.+.  .|.+.+.|+++
T Consensus         8 ~~~~v~~G~~v~l~C~v~--~p~~~v~W~k~   36 (90)
T d1x44a1           8 EDTTAYCGERVELECEVS--EDDANVKWFKN   36 (90)
T ss_dssp             CCEEEETTEEEEEEEECS--SSSCCCEEEET
T ss_pred             CCEEEeCCCcEEEEEEEC--CCCceEEEEEe
Confidence            567899999999999973  57789999975

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.73  E-value=0.0014  Score=34.34  Aligned_cols=27  Identities=11%  Similarity=0.203  Sum_probs=22.4

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .....++|+|.++..+ |+|.|.|.+..
T Consensus        67 ~~~~~~~L~I~~~~~~-DsavYyCA~~~   93 (112)
T d2bnub1          67 STTEDFPLRLLSAAPS-QTSVYFCASSY   93 (112)
T ss_dssp             SSSSBCCEEESSCCGG-GCEEEEEEEEC
T ss_pred             CCCCEEEEEECCCCHH-HCEEEEEeecC
Confidence            4445678999999999 99999997653

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.72  E-value=0.0017  Score=34.37  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=23.3

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .....+.|+|.+++.+ |+|.|.|.+..
T Consensus        72 ~~~~~~~L~i~~~~~~-Dsa~YyCa~~~   98 (118)
T d2ij0c1          72 ASPTLSTLTVTSAHPE-DSGFYVCSALA   98 (118)
T ss_dssp             CSSSEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             cccccccccccccccc-cCceEEEEEec
Confidence            4556788999999999 99999998865

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.70  E-value=0.0017  Score=34.59  Aligned_cols=33  Identities=15%  Similarity=0.166  Sum_probs=26.8

Q ss_pred             eeEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           4 VEIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         4 ~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ...+..+.+.+.+.|+|.+++.+ |++.|.|...
T Consensus        66 RftiS~D~s~n~~~L~~~sL~~e-DtAvYYCAr~   98 (117)
T d1c5db1          66 RLSINRDTSKSQVFLKMNSLQTE-DTAIYFCTRE   98 (117)
T ss_dssp             SEEEEEETTTTEEEEEECSCCGG-GCEEEEEEEC
T ss_pred             ceEEecccccceeeccccccccC-cceEEEEecc
Confidence            34455667788899999999999 9999999643

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.66  E-value=0.0017  Score=33.94  Aligned_cols=30  Identities=23%  Similarity=0.159  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|++++|+|..........+.|++|
T Consensus         7 ~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ   36 (112)
T d1kgcd1           7 SMESNEEEPVHLPCNHSTISGTDYIHWYRQ   36 (112)
T ss_dssp             EEEEETTSCEEEEEEESCCCTTCCEEEEEE
T ss_pred             EEEECCCCCEEEEEEEeCCCccccEEEEEE
Confidence            457789999999998653343445899997

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=96.65  E-value=0.0011  Score=34.83  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             EEEEEccceeeccCe---EEEEEEEECC
Q psy5866          16 YDLIISNASFERDNG---KFECRLKAAG   40 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G---~y~C~~~~~~   40 (98)
                      .+|.|.+++.. |+|   .|.|.|.|..
T Consensus        63 ~~L~i~~v~~~-D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          63 GNLYFTIVTKE-DVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             SCEEEEEECGG-GCCSSEEEEEEEECTT
T ss_pred             cccEEeeeEee-ccCCceEEEEEEEeCC
Confidence            35999999999 877   7999999964

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.65  E-value=0.0015  Score=34.31  Aligned_cols=31  Identities=16%  Similarity=0.118  Sum_probs=25.4

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRL   36 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~   36 (98)
                      ..+..+.+.+...|+|++++.+ |++.|.|..
T Consensus        60 ~tiSrd~s~n~~~L~i~~l~~e-DtAvYyCA~   90 (107)
T d1sjva_          60 FTISRDNAKKTVYLEMNSLEPE-DTAVYYCYT   90 (107)
T ss_dssp             EEEEECTTTCCEEEEECSCCGG-GCSEEEEEE
T ss_pred             eEEecCCceeEEEEeecCCCcc-cceeeeEec
Confidence            3445566777889999999999 999999964

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.61  E-value=0.0019  Score=34.88  Aligned_cols=32  Identities=16%  Similarity=0.278  Sum_probs=26.2

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ..+..+.......|+|++++.+ |++.|.|...
T Consensus        69 ftis~d~s~~t~~L~i~~l~~e-DtAvYyCAr~  100 (126)
T d1etzb1          69 LTVSKDTSSNQVFLKITSVDTS-DTATYHCARR  100 (126)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEE
T ss_pred             eEEecccCCcEEEcceeccccc-ccceEEEEEe
Confidence            3445566777889999999999 9999999754

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.0018  Score=34.01  Aligned_cols=32  Identities=25%  Similarity=0.204  Sum_probs=24.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ....+.+|++++|.|..........+.|++|.
T Consensus         7 ~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~   38 (114)
T d3bp5a1           7 AWLTVSEGANATFTCSLSNWSEDLMLNWNRLS   38 (114)
T ss_dssp             SEEEEETTCCEEEEEEESCCCTTCEEEEEEEC
T ss_pred             CeEEECCCCCEEEEEEECCCCCcceEEEEEEC
Confidence            34678899999999987544445678999873

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.58  E-value=0.0063  Score=32.25  Aligned_cols=32  Identities=13%  Similarity=0.281  Sum_probs=26.6

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+..+.+...+.|+|++++.+ |++.|.|....
T Consensus        68 tis~D~s~~~~~L~i~~L~~e-DtAvYyCAr~~   99 (116)
T d7fabh1          68 TMLVNTSKNQFSLRLSSVTAA-DTAVYYCARNL   99 (116)
T ss_dssp             EEEEETTTTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             eeecccchhhhhccccccccc-cceEEEeeeec
Confidence            445567778899999999999 99999997654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.0021  Score=34.18  Aligned_cols=30  Identities=30%  Similarity=0.371  Sum_probs=24.1

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|++++|+|... +.....+.|++|
T Consensus         9 ~~~~~~~G~~vtL~C~~~-~~~~~~v~Wyrq   38 (122)
T d1nezg_           9 KKMDAELGQKVDLVCEVL-GSVSQGCSWLFQ   38 (122)
T ss_dssp             SCEEECTTCCEEEEEEEE-SCCSSCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEEc-CccCCCEEEEEE
Confidence            456788999999999875 455677999986

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.52  E-value=0.0019  Score=35.13  Aligned_cols=32  Identities=16%  Similarity=0.269  Sum_probs=26.2

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+..+.....+.|+|++++.+ |++.|.|....
T Consensus        70 tis~d~s~~~~~L~i~~l~~e-DtAvYYCAr~~  101 (132)
T d1tjgh1          70 TITKDTSKNQVVLVMTRVSPV-DTATYFCAHRR  101 (132)
T ss_dssp             EEEEETTTTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             eecccccccEEEcccccCCcc-cceEEEEEEec
Confidence            344566777889999999999 99999997653

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.51  E-value=0.0024  Score=34.12  Aligned_cols=32  Identities=16%  Similarity=0.257  Sum_probs=25.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ..+..+.+.+...|+|++++.+ |++.|.|...
T Consensus        68 ~tis~d~s~~~~~L~i~~L~~e-DsAvYYCA~~   99 (119)
T d1qnzh_          68 AKLTVEKSSSTVYLEFSRLTSD-DSAVYYCAIH   99 (119)
T ss_dssp             EEEEEETTTTEEEEEEEEECGG-GCEEEEEEEC
T ss_pred             ceeecccccceeeeeecccCcc-ceeEEEEEEe
Confidence            3445566777888999999999 9999999643

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.51  E-value=0.0024  Score=34.11  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=25.6

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRL   36 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~   36 (98)
                      ..+..+.+.+...|.|.+++.+ |++.|.|..
T Consensus        67 ftiS~D~s~nt~~L~i~~l~~e-DtA~YYCAr   97 (120)
T d1dn0b1          67 VTISVDTSKNQFSLKLSSVTAA-DTAVYYCAR   97 (120)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEE
T ss_pred             eEEeccCchheecccccccccc-cccEEEEEe
Confidence            4445567788889999999999 999999943

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.50  E-value=0.0023  Score=33.23  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=24.0

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      +...+.+|++++|+|.... .....+.|++|.
T Consensus         8 ~s~~~~~G~svtL~C~~s~-~~~~~~~WYrq~   38 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASE-SVTSRMHWYQQK   38 (106)
T ss_dssp             SEEEECTTSCEEEEEEESS-CCTTCEEEEEEC
T ss_pred             CeEEECCCCCEEEEEEeCC-CCCccEEEEecC
Confidence            3467889999999999863 445679999873

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.49  E-value=0.0034  Score=33.50  Aligned_cols=32  Identities=19%  Similarity=0.183  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ..+..+...+...|+|.+++.+ |++.|.|...
T Consensus        68 ftiSrD~s~nt~yLqm~sL~~e-DTAvYYCAr~   99 (119)
T d1rz7h1          68 VTITADTSTDTGYLELSSLRSE-DTAVYYCAAD   99 (119)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEC
T ss_pred             EEEecccCceEEEeeeeccCcc-cceEEEEeec
Confidence            4455667788889999999999 9999999654

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.49  E-value=0.0016  Score=34.64  Aligned_cols=33  Identities=15%  Similarity=0.192  Sum_probs=26.8

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.+...|+|.+++.+ |++.|.|....
T Consensus        68 ~tiSrD~s~nt~yL~m~~L~~e-DTAvYYCAr~~  100 (117)
T d1jpth1          68 ATISADNSKNTAYLQMNSLRAE-DTAVYYCARDT  100 (117)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             EEEEeccccceEEecccccCCC-CceEEEEeecC
Confidence            4455667777889999999999 99999996543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.48  E-value=0.0019  Score=33.62  Aligned_cols=31  Identities=16%  Similarity=0.173  Sum_probs=19.7

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +..+.+.+...|+|++++.+ |++.|.|....
T Consensus        57 iS~D~s~~t~~L~~~sL~~e-DTAvYYCAr~~   87 (103)
T d1oari_          57 LTVDKPSSTAYMQLSSLTSE-DSAVYYCARMW   87 (103)
T ss_dssp             EEC----CEEEEEECCC----CCSEEEEEEEE
T ss_pred             EeccccccEEEeeeeecccc-ccEEEEeEEEC
Confidence            34445566788999999999 99999997654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.43  E-value=0.0027  Score=33.77  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=27.0

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.+...|+|.+++.+ |++.|.|....
T Consensus        67 ftiS~D~s~~t~~L~m~sL~~e-DtAvYYCAr~~   99 (117)
T d1um5h1          67 ATLTSDKSSNTAYLELSSLTSE-DSAVYYCARSS   99 (117)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EEEEeccCceeEeecccccCCC-cceEEEEeecc
Confidence            4445567788889999999999 99999997544

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0029  Score=32.17  Aligned_cols=24  Identities=13%  Similarity=0.420  Sum_probs=20.9

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ....+.|.+|+.. |+|.|.|...+
T Consensus        55 ~~a~F~i~~v~~~-~~G~Y~C~y~~   78 (95)
T d1olla1          55 NKVKFYIPDMNSR-MAGQYSCIYRV   78 (95)
T ss_dssp             CEEEEEESSCCGG-GCEEEEEEEEE
T ss_pred             cEEEEEEeeeecC-CCceEEEEeCC
Confidence            3567999999999 99999998765

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.42  E-value=0.0033  Score=33.42  Aligned_cols=33  Identities=9%  Similarity=0.157  Sum_probs=27.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.....|+|++++.+ |++.|.|....
T Consensus        68 ~tiS~D~s~~t~~L~i~~L~~e-DtAvYYCA~~~  100 (117)
T d1iqdb1          68 VTMTADTSTNIAYMELSSLRSD-DTAVYYCAVPD  100 (117)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEECS
T ss_pred             eeeecccccceEEEeecccCcC-cceEEEEeEcC
Confidence            3445667788889999999999 99999997643

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.41  E-value=0.003  Score=33.58  Aligned_cols=32  Identities=13%  Similarity=0.149  Sum_probs=26.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ..+..+.+.+...|+|++++.+ |++.|.|...
T Consensus        68 ~t~s~D~s~~~~~L~i~~L~~e-DtAvYYCAr~   99 (117)
T d1mfah1          68 TKLTAVTSTTTAYMELSSLTSE-DSAVYYCTRG   99 (117)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEE
T ss_pred             EEEEcccCccEeEeeecccCCC-cceEEEEecc
Confidence            3445566777889999999999 9999999654

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.41  E-value=0.0013  Score=33.99  Aligned_cols=31  Identities=16%  Similarity=0.263  Sum_probs=23.5

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      +...+.+|++++|+|... ......+.|+||.
T Consensus         6 ~sl~~~~G~svtl~C~~~-~~~~~~~~WYrQ~   36 (103)
T d8faba1           6 PSVSVSPGQTARITCSAN-ALPNQYAYWYQQK   36 (103)
T ss_dssp             SEEEECTTSCEEEEEECT-TGGGSCCEEEEEC
T ss_pred             CeEEECCCCCEEEEEEeC-CCCCCCEEEEEcc
Confidence            346788999999999865 3344568999983

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.41  E-value=0.0038  Score=33.27  Aligned_cols=33  Identities=12%  Similarity=0.130  Sum_probs=26.8

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.....|+|++++.+ |++.|.|....
T Consensus        66 ~tiS~D~s~~~~~L~i~~L~~e-DtA~YYCAr~~   98 (119)
T d1kxvc_          66 FTISQGNAKNTAYLQMDSLKPD-DTAMYYCKPSL   98 (119)
T ss_dssp             EEEEECSSTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             eEEecccCCcceecccccCCcC-CcceEeeeecc
Confidence            3444566777889999999999 99999997654

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.39  E-value=0.0019  Score=34.31  Aligned_cols=33  Identities=12%  Similarity=0.193  Sum_probs=26.8

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.+.+.|+|++++.+ |++.|.|....
T Consensus        67 ~tis~D~s~n~~~L~~~~l~~e-DTAvYYCAr~~   99 (116)
T d1a2yb_          67 LSISKDNSKSQVFLKMNSLHTD-DTARYYCARER   99 (116)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGG-GCEEEEEEEES
T ss_pred             ceEeccCCCceEEcceeeeeec-cceEEEEEEeC
Confidence            3445566788899999999999 99999997543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.38  E-value=0.0027  Score=33.99  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+...+...|+|++++.+ |++.|.|....
T Consensus        68 ~tis~D~s~~~~~L~i~sL~~e-DtAvYYCAr~~  100 (121)
T d1ol0a_          68 FTISRDNSKNTLYLQMNSLRAE-DTAVYYCAREP  100 (121)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEECC
T ss_pred             eEEeccccceeEEeeeeecccc-cceEEEEEEec
Confidence            3445566778889999999999 99999996543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.37  E-value=0.0027  Score=33.93  Aligned_cols=32  Identities=9%  Similarity=0.141  Sum_probs=26.4

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+..+.+.+.+.|+|.+++.+ |++.|.|....
T Consensus        69 tis~d~s~n~v~L~i~~l~~e-DtA~YYCAr~~  100 (120)
T d1pg7x1          69 TLTVDRSSTTAYIELVRLTSN-DSAVYYCARED  100 (120)
T ss_dssp             EEEEETTTTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             eeeeccCcceEEccccccCCC-cceEEEeeecC
Confidence            344566778889999999999 99999998653

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.37  E-value=0.0017  Score=34.03  Aligned_cols=32  Identities=9%  Similarity=0.020  Sum_probs=24.5

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ....+.+|++++|.|..........+.|++|.
T Consensus         7 ~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~   38 (115)
T d1fo0a_           7 TSISVMEKTTVTMDCVYETQDSSYFLFWYKQT   38 (115)
T ss_dssp             CEEEEETTCCEEECCEECCCCSSCEEEEEEEC
T ss_pred             CEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeC
Confidence            34678899999999986544555678999873

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.36  E-value=0.0035  Score=32.92  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=26.3

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+..+.......|+|++++.+ |++.|.|....
T Consensus        71 tiS~D~s~~t~~L~i~sL~~e-DTAvYYCAr~~  102 (109)
T d2ck0h1          71 TISRDDSQSMLYLQMNNLKTE-DTGIYYCVRGR  102 (109)
T ss_dssp             EEEEETTTTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             eeccccccceeEecccCCCHh-HCEEEEEEEcC
Confidence            445566778889999999999 99999997543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.0048  Score=31.08  Aligned_cols=38  Identities=24%  Similarity=0.393  Sum_probs=27.0

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEE
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTV   54 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v   54 (98)
                      .-+.|....+-++ |.|.|+|.+....  ....+.++.+.|
T Consensus        66 s~FvLhF~pvl~s-DnGsYrCSanf~s--~vieSHSvti~V  103 (104)
T d1xaua_          66 PVFVLHFKPIHLS-DNGSYSCSTNFNS--QVINSHSVTIHV  103 (104)
T ss_dssp             CEEEEEETTCCGG-GCEEEEEEEEETT--EEEECCCEEEEE
T ss_pred             eEEEEEeeeeeec-CCCceEEecCCCh--hheecceEEEEe
Confidence            3567889999999 9999999998742  233444444443

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.35  E-value=0.0028  Score=34.17  Aligned_cols=33  Identities=15%  Similarity=0.160  Sum_probs=27.5

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.+.+.|+|++++.+ |++.|.|....
T Consensus        68 ~tiSrD~s~~t~yL~~~sL~~e-DTavYYCAR~~  100 (127)
T d2fx7h1          68 ITITADRSTSTAYLELNSLRPE-DTAVYYCAREG  100 (127)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EEEeccCccceEeeeecccCcc-cceEEEEeecc
Confidence            4456677788899999999999 99999997654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.35  E-value=0.0032  Score=33.56  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=27.0

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+...+...|+|.+++.+ |++.|.|....
T Consensus        68 ftiSrD~s~nt~~L~~~sL~~e-DtAvYYCAr~~  100 (118)
T d2fbjh1          68 FIISRDNAKNSLYLQMSKVRSE-DTALYYCARLH  100 (118)
T ss_dssp             EEEEECSSSCEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EEEeecCccceeeccccccCCC-cceEEEeeEec
Confidence            3455566777889999999999 99999997655

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.34  E-value=0.0034  Score=32.76  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             CCceecCCCcEEEEEEcCCCC-CCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGS-PDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~   98 (98)
                      ++..+.+|++++|+|....+. ....+.|++|.
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~   40 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQF   40 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEEC
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceeee
Confidence            456788999999999865433 23459999873

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.34  E-value=0.0024  Score=33.72  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=23.8

Q ss_pred             CCceecCCCcEEEEEEcCCCC-CCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGS-PDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~   98 (98)
                      ++..+.+|++++|.|...... ....+.|++|.
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~   40 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQV   40 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECC
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeee
Confidence            346788999999999875443 24568999873

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0056  Score=31.36  Aligned_cols=38  Identities=8%  Similarity=0.259  Sum_probs=31.0

Q ss_pred             EEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVL   55 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~   55 (98)
                      .+|+|..+..+ |+|.|...+.+.++ .......+.|.|+
T Consensus        63 GtLkIK~L~~~-d~GtYkv~vYd~~G-k~vlektf~LkI~  100 (101)
T d1hnfa1          63 GTLKIKHLKTD-DQDIYKVSIYDTKG-KNVLEKIFDLKIQ  100 (101)
T ss_dssp             SCEEECSCCGG-GCEEEEEEEEETTS-CEEEEEEEEEEEE
T ss_pred             CcEEeeeeeec-CCCcEEEEEEcCCC-cEeeeeeEEEEee
Confidence            46999999999 99999999998754 4666666777765

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.34  E-value=0.0036  Score=33.13  Aligned_cols=31  Identities=16%  Similarity=0.158  Sum_probs=25.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRL   36 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~   36 (98)
                      ..+..+...+...|+|++++.+ |++.|.|..
T Consensus        68 ftiSrD~s~nt~~L~~~~L~~e-DtAvYYCA~   98 (114)
T d1indh1          68 FTISRDNAQNNLYLQLNSLRSE-DTALYFCAS   98 (114)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEC
T ss_pred             EEEeccCccceeeeeeeeeccC-cccEEEECC
Confidence            3445567788889999999999 999999963

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.33  E-value=0.0029  Score=33.59  Aligned_cols=29  Identities=17%  Similarity=0.321  Sum_probs=23.9

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRL   36 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~   36 (98)
                      +..+.......|.|++++.+ |++.|.|..
T Consensus        70 is~D~s~~t~~L~i~~l~~e-DtAvYYCAr   98 (115)
T d1f3dh1          70 LTVDKSSSTAFMHLNSLTFE-DSAVYYCAN   98 (115)
T ss_dssp             EEEETTTTEEEEEECSCCGG-GCEEEEEEE
T ss_pred             EeeccCceeeEeeeeecCcC-CcEEEEEec
Confidence            34456677788999999999 999999954

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.32  E-value=0.0022  Score=34.47  Aligned_cols=32  Identities=13%  Similarity=0.169  Sum_probs=25.5

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+..+...+.+.|+|.+++.+ |++.|.|....
T Consensus        70 tis~D~s~~~~~L~i~sl~~e-DsAvYyCAr~~  101 (123)
T d1r0ah1          70 TVSKDTSNNQAFLNMMTVETA-DTAIYYCAQSA  101 (123)
T ss_dssp             EEEEEGGGTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EccccccceeEEcceeecccc-cceEEeecccC
Confidence            344455667789999999999 99999997543

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.32  E-value=0.0021  Score=34.23  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=25.0

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRL   36 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~   36 (98)
                      ..+..+...+...|+|.+++.+ |++.|.|..
T Consensus        68 ftisrD~s~~tvyL~~~~L~~e-DtAvYYCAr   98 (118)
T d1nlbh1          68 FAFSLETSASTAYLQINSLKNE-DTATYFCAR   98 (118)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGG-GCEEEEEEE
T ss_pred             eEEEecCCceeEEeeeeecccC-cceEEEEee
Confidence            3444556677888999999999 999999954

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.31  E-value=0.0031  Score=33.95  Aligned_cols=32  Identities=16%  Similarity=0.253  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ..+..+.+.+...|+|.+++.+ |++.|.|...
T Consensus        68 ~tis~D~s~n~vyL~l~sL~~e-DtAvYYCAR~   99 (125)
T d1rihh1          68 AILTADRSSNTAFMYLNSLTSE-DSAVYYCARE   99 (125)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEE
T ss_pred             eEEecccCcceEeeeeeccCcc-cceEEEEeee
Confidence            4455667788889999999999 9999999754

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.29  E-value=0.0033  Score=33.34  Aligned_cols=33  Identities=15%  Similarity=0.229  Sum_probs=27.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+...+...|.|.+++.+ |.+.|.|....
T Consensus        68 ~tiS~D~s~~tvyL~~~sL~~e-DtAvYYCAr~~  100 (116)
T d1mjuh1          68 ATLTVDTSSSTAYMQLSSLTSD-DSAVYYCANKL  100 (116)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             eeEecccccceeEecccccCCC-CceEEEEcccC
Confidence            4455667788889999999999 99999996543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.29  E-value=0.0039  Score=33.52  Aligned_cols=33  Identities=15%  Similarity=0.122  Sum_probs=27.4

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+...+...|+|.+++.+ |++.|.|....
T Consensus        68 ftiSrD~s~~t~~Lqm~sL~~e-DTAvYYCAr~~  100 (125)
T d1op3h1          68 FTVSRDDLEDFVYLQMHKMRVE-DTAIYYCARKG  100 (125)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             eEEeccCccceEeeeeeccCCc-cceeEeEeecc
Confidence            4555677788899999999999 99999997543

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=96.28  E-value=0.0004  Score=34.98  Aligned_cols=29  Identities=14%  Similarity=0.078  Sum_probs=24.8

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|+++.|.|.+  +.|.|.+.|+++
T Consensus         9 ~d~~v~~G~~~~~~c~v--s~p~~~v~W~k~   37 (89)
T d1tiua_           9 YGVEVFVGETAHFEIEL--SEPDVHGQWKLK   37 (89)
T ss_dssp             CCEEEETTSCCCEEEBC--SSSSCCCBCCSS
T ss_pred             cCEEEeCCCcEEEEEEE--CCCCcEEEEEEe
Confidence            56789999999999986  468889999875

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.27  E-value=0.0019  Score=34.52  Aligned_cols=32  Identities=13%  Similarity=0.268  Sum_probs=26.4

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+..+.+.+.+.|+|.+++.+ |++.|.|....
T Consensus        70 TiSrD~s~n~~~L~~~sL~~e-DtAvYYCAr~~  101 (120)
T d1ai1h1          70 TISRDTSLNKFFIQLISVTNE-DTAMYYCSREN  101 (120)
T ss_dssp             EEEEETTTTEEEEEESSCCGG-GCEEEEEEEEE
T ss_pred             eeccccccceeecceeeeecc-ceeEEEEEecC
Confidence            345566777889999999999 99999997554

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0022  Score=32.95  Aligned_cols=24  Identities=13%  Similarity=0.102  Sum_probs=18.7

Q ss_pred             CCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+....+.|.+. |.|.|++.|+++
T Consensus        16 ~~~~~~i~~~v~-G~P~P~v~W~~n   39 (105)
T d1wwca_          16 LRLEHCIEFVVR-GNPPPTLHWLHN   39 (105)
T ss_dssp             CCCEEEEEEEEE-CSSCCEEEEEET
T ss_pred             EEEEEEEEEEEE-EeCCCeEEEEeC
Confidence            344566888875 899999999975

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.26  E-value=0.0041  Score=33.58  Aligned_cols=34  Identities=15%  Similarity=0.088  Sum_probs=28.2

Q ss_pred             eeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           4 VEIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         4 ~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ...+..+...+...|.|.+++.+ |++.|.|....
T Consensus        67 R~tiS~D~s~~t~yL~~~sL~~e-DTA~YYCAr~~  100 (128)
T d2nxyd1          67 RVTITADKSTSTVYLELRNLRSD-DTAVYFCAGVY  100 (128)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EEEEeecCCCceEEeeeeecccc-CceEEEEeEEe
Confidence            34556677788889999999999 99999998765

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.26  E-value=0.0042  Score=33.16  Aligned_cols=33  Identities=21%  Similarity=0.186  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.+...|+|.+++.+ |++.|.|....
T Consensus        70 ftiS~D~s~n~~~L~~~~L~~e-DtAvYYCA~~~  102 (120)
T d1dlfh_          70 FTISRDDSKRRVYLQMNTLRAE-DTGIYYCTGIY  102 (120)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEB
T ss_pred             ceeecccccceeccceeeccCC-CceEEEeeEec
Confidence            3445567778889999999999 99999996544

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.23  E-value=0.0035  Score=33.46  Aligned_cols=33  Identities=12%  Similarity=0.170  Sum_probs=27.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.+.+.|+|.+++.+ |++.|.|....
T Consensus        68 ftiS~D~s~nt~~L~m~~L~~e-DTAvYYCAr~~  100 (120)
T d1ad9b1          68 ATLTVDTSTNTAYMELSSLRSE-DTAFYFCAREK  100 (120)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEB
T ss_pred             EEEEecCcceEEeccccccCCC-cceEEEEEEcC
Confidence            3455667788899999999999 99999996543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.23  E-value=0.0045  Score=32.82  Aligned_cols=31  Identities=19%  Similarity=0.187  Sum_probs=23.5

Q ss_pred             CCceecCCCcEEEEEEcCCCC-CCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGS-PDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~   97 (98)
                      +...+.+|++++|+|...+.. ....+.|++|
T Consensus         9 ~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ   40 (120)
T d1hxma1           9 QTVPVSIGVPATLRCSMKGEAIGNYYINWYRK   40 (120)
T ss_dssp             SEEEEETTCCEEEEEEECSSCGGGSEEEEEEE
T ss_pred             CCEEECCCCCEEEEEEEeccCccCCcCeEEEc
Confidence            456788999999999976433 2356899987

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.23  E-value=0.0045  Score=32.90  Aligned_cols=32  Identities=16%  Similarity=0.222  Sum_probs=26.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ..+..+.+.+...|+|++++.+ |++.|.|...
T Consensus        68 fTiS~D~s~~t~yLq~~~L~~e-DTAvYYCAr~   99 (117)
T d1jnhb1          68 ATLTADRSSSIVYLQLNSLTSE-DSAVYSCSRG   99 (117)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEE
T ss_pred             EEEeccCccceeeecccccCCC-cceEEEEeec
Confidence            3455567777889999999999 9999999654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.22  E-value=0.0025  Score=33.54  Aligned_cols=32  Identities=13%  Similarity=0.235  Sum_probs=24.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ....+.+|++++|.|..........+.|++|.
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~   39 (116)
T d1tvda_           8 PDQTVASGSEVVLLCTYDTVYSNPDLFWYRIR   39 (116)
T ss_dssp             CCEEEETTCCEEECCEEECCSSSCCEEEEEEC
T ss_pred             CCEEEcCCCCEEEEEEEcCCccCCcEEEEEeC
Confidence            45678899999999986544456679999873

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.22  E-value=0.0012  Score=34.51  Aligned_cols=27  Identities=11%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          11 PDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        11 ~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .....++|.|.++.++ |+|.|.|.+..
T Consensus        66 ~~~~~~~L~i~~~~~~-Dsa~YyCA~~~   92 (112)
T d2cdeb1          66 IRTEHFPLTLESARPS-HTSQYLCASSE   92 (112)
T ss_dssp             SSSSBCCEEBSSCCTT-TCSEEEEEEEC
T ss_pred             CCCCceEeeecccccc-ccccEEEEEec
Confidence            3455678999999999 99999998764

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.20  E-value=0.0044  Score=33.15  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+...+...|+|.+++.+ |++.|.|....
T Consensus        70 ftiSrD~s~nt~~L~~~sL~~e-DTAvYYCar~~  102 (122)
T d1q9rb1          70 FTISRDNSQSILYLQMNTLRAE-DSATYYCARDH  102 (122)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEECC
T ss_pred             ceeeeecccceeccceeeeccC-cceEEEEEecC
Confidence            3445567778889999999999 99999997643

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.19  E-value=0.0039  Score=33.57  Aligned_cols=32  Identities=16%  Similarity=0.169  Sum_probs=26.5

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ..+..+...+...|+|.+++.+ |++.|.|...
T Consensus        67 fTiS~D~s~nt~yL~m~~L~~e-DTAvYYCAr~   98 (126)
T d1lmka1          67 ATFTADTSSNIAYMQLSSLTSE-DSAVYYCARG   98 (126)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEE
T ss_pred             eEEEecCCccEEEeeecccCCC-cceEEEEeec
Confidence            3455667788899999999999 9999999643

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.19  E-value=0.0025  Score=34.16  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=24.9

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +..+.......|+|++++.+ |++.|.|....
T Consensus        70 is~D~s~~t~~L~i~~L~~e-DtAvYYCAr~~  100 (121)
T d1j05b_          70 ITADTSSNTAYLQLTSLTSE-DTAVYYCAPFG  100 (121)
T ss_dssp             EEEEGGGTEEEEEECSCCGG-GCEEEEEEEEB
T ss_pred             EEeecCCceeeecccccCcC-cceEEEeEeec
Confidence            44455667788999999999 99999997543

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0033  Score=32.21  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             cCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          72 TEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        72 ~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..++...+.|.+. |.|.|.+.|+++
T Consensus        14 ~~~~~~~i~~~v~-G~P~P~i~W~~~   38 (103)
T d1wwbx_          14 TSDHHWCIPFTVK-GNPKPALQWFYN   38 (103)
T ss_dssp             CCCCEEEEEEEEE-CSSCCEEEEEET
T ss_pred             ccceeEEEEEEEE-EeCCCEEEEEEC
Confidence            3567788999985 899999999975

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.19  E-value=0.0039  Score=33.75  Aligned_cols=34  Identities=9%  Similarity=0.102  Sum_probs=27.8

Q ss_pred             eeEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           4 VEIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         4 ~~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ...+..+.+.+...|+|.+++.+ |++.|.|....
T Consensus        66 R~tis~D~s~~tv~L~~~~L~~e-DtAvYyCAr~~   99 (130)
T d1rhhb1          66 RVTFTADQATSTAYMELTNLRSD-DTAVYYCARDF   99 (130)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             eeEEeccCCccEEEEEeeccCCC-CcEEEEEEeec
Confidence            34456677788889999999999 99999997653

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.19  E-value=0.0025  Score=34.00  Aligned_cols=31  Identities=13%  Similarity=0.234  Sum_probs=25.2

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRL   36 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~   36 (98)
                      ..+..+.+.+...|+|.+++.+ |++.|.|..
T Consensus        68 ftiSrD~s~nt~~L~~~sL~~e-DTAvYYCAr   98 (119)
T d1eapb1          68 ATLTADQSSSTAYMQLNSLTSE-DSAVYFCKR   98 (119)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGG-GCEEEEEEE
T ss_pred             eEEEcccCcceEEeeeecccCC-cceEEEEEE
Confidence            3444556677788999999999 999999964

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0015  Score=32.96  Aligned_cols=28  Identities=21%  Similarity=0.273  Sum_probs=22.9

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|+++.|.|.+. | |.|.+.|+++
T Consensus         6 ~~~~~~G~~~~l~C~~~-g-~~~~v~W~~~   33 (92)
T d1olza1           6 QHFFKHGGTAELKCSQK-S-NLARVFWKFQ   33 (92)
T ss_dssp             EEEEETTSCEEECCCCS-C-TTCEEEEEES
T ss_pred             heeEeCCCEEEEEEEee-c-cCCceeeecC
Confidence            36788999999999986 4 5678999864

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.18  E-value=0.0041  Score=33.49  Aligned_cols=33  Identities=15%  Similarity=0.201  Sum_probs=25.2

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.....|+|++++.+ |++.|.|....
T Consensus        67 ~tis~D~s~~~~~L~i~~l~~e-DTAvYYCAr~~   99 (126)
T d1rjca1          67 LTISLDNAKNTLYLQMNSLKPE-DTAMYYCAADT   99 (126)
T ss_dssp             EEEEEEC--CEEEEEECSCCGG-GCEEEEEEECC
T ss_pred             EEEEecCCceEEEEEEeccCcc-cCceeEEEeec
Confidence            3445566777888999999999 99999997543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.16  E-value=0.0025  Score=33.95  Aligned_cols=31  Identities=13%  Similarity=0.180  Sum_probs=25.4

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      .+..+.+.+...|+|++++.+ |++.|.|...
T Consensus        69 tiS~D~s~~t~~L~~~sL~~e-DTAvYYCAr~   99 (118)
T d2jelh1          69 TMTVDKSSSTAYMELARLTSE-DSAIYYCARV   99 (118)
T ss_dssp             EEEEEGGGTEEEEEECSCCGG-GCEEEEEEEE
T ss_pred             EEecccCcceEeecccccccC-cceeeeEEEe
Confidence            345566777889999999999 9999999543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.16  E-value=0.0042  Score=33.09  Aligned_cols=33  Identities=15%  Similarity=0.221  Sum_probs=27.6

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.+...|.|.+++.+ |++.|.|....
T Consensus        68 ~TiS~D~s~nt~~L~~~sL~~e-DTAvYYCAr~~  100 (119)
T d1ncwh1          68 ISITRDTSKNQFFLQLNSVTTE-DTATYYCAGLL  100 (119)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             ceEecccccceeeccccccccC-CceEEEEeEec
Confidence            4555677888899999999999 99999997554

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.15  E-value=0.003  Score=33.10  Aligned_cols=31  Identities=16%  Similarity=0.329  Sum_probs=22.7

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCC--eEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDP--QISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~   97 (98)
                      ++..+.+|++++|+|....+....  -+.|++|
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ   40 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQE   40 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEE
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEe
Confidence            446788999999999976443322  3889987

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0027  Score=32.78  Aligned_cols=23  Identities=9%  Similarity=0.117  Sum_probs=17.8

Q ss_pred             EEEEEccceeeccCeEEEEEEEEC
Q psy5866          16 YDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..|.|.....+ |.|.|+|+|.+.
T Consensus        63 s~l~~~~~~~d-~g~~ytC~A~n~   85 (106)
T d1zxqa1          63 ATFNSTADRED-GHRNFSCLAVLD   85 (106)
T ss_dssp             EEEEEECCGGG-GGCEEEEEEEEE
T ss_pred             EEEEEeeehhc-CCcEEEEEEEec
Confidence            34666666666 888999999986

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.14  E-value=0.0041  Score=33.54  Aligned_cols=33  Identities=18%  Similarity=0.199  Sum_probs=27.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+...+...|+|++++.+ |++.|.|....
T Consensus        68 ~Tis~D~s~~t~yL~~~~L~~e-DTA~YYCAr~~  100 (127)
T d2fb4h1          68 FTISRNDSKNTLFLQMDSLRPE-DTGVYFCARDG  100 (127)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             EEEeccCCccEEEeeeeeeeec-ceeEEEEEEec
Confidence            3455667788889999999999 99999997553

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.10  E-value=0.0022  Score=33.56  Aligned_cols=31  Identities=13%  Similarity=0.038  Sum_probs=23.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|++++|+|..........+.|++|
T Consensus         8 ~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq   38 (114)
T d2ak4d1           8 TEISVVEKEDVTLDCVYETRDTTYYLFWYKQ   38 (114)
T ss_dssp             CEEEEETTCCEEECCEEECSCSSCEEEEEEE
T ss_pred             CeEEEeCCCCEEEEEEEcCCCcCccEEEEEc
Confidence            3457889999999998544444556899987

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.09  E-value=0.0033  Score=33.63  Aligned_cols=30  Identities=17%  Similarity=0.222  Sum_probs=24.6

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      +..+...+...|.|.+++.+ |++.|.|...
T Consensus        70 iSrD~s~~t~yLq~~~L~~e-DtAvYYCAr~   99 (121)
T d2p49b1          70 ISRDKGKNTVYLQMDSLKPE-DTATYYCAAG   99 (121)
T ss_dssp             EECTTSTTEEEEEECSCCGG-GCEEEEEEES
T ss_pred             EeecCCceEEEEEeeecccc-ceeEEeeecc
Confidence            34455677888999999999 9999999753

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.07  E-value=0.0035  Score=33.81  Aligned_cols=32  Identities=16%  Similarity=0.283  Sum_probs=26.5

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ..+..+...+...|+|.+++.+ |++.|.|...
T Consensus        68 ~tis~d~s~nt~yL~l~~l~~e-DtAvYyCAr~   99 (127)
T d3cx5j1          68 LSITRDTSKNQFFLKLNSVTTE-DTATYYCARS   99 (127)
T ss_dssp             BCCEEETTTTEEEEEECSCCGG-GCEEEEEEEE
T ss_pred             ceeecccccceeecceeccccc-cceEEEeeee
Confidence            3455567788899999999999 9999999754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.07  E-value=0.0049  Score=32.96  Aligned_cols=32  Identities=13%  Similarity=0.129  Sum_probs=26.3

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+..+.+.+...|.|.+++.+ |++.|.|....
T Consensus        70 tiS~D~s~ntvyL~~~~L~~e-DtA~YYCAr~~  101 (122)
T d1vgeh1          70 TFTRDTSATTAYMGLSSLRPE-DTAVYYCARDP  101 (122)
T ss_dssp             EEEEETTTTEEEEEECSCCGG-GCEEEEEEEET
T ss_pred             EEeccCCcceeeecccccCCC-cceEEEEeecC
Confidence            345566777889999999999 99999997653

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.05  E-value=0.0054  Score=33.05  Aligned_cols=31  Identities=16%  Similarity=0.289  Sum_probs=25.3

Q ss_pred             EEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           7 IDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         7 ~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      +..+.+.....|+|.+++.+ |++.|.|....
T Consensus        75 is~d~s~~~~~L~i~~l~~e-DtAvYYCAr~~  105 (127)
T d1i3ua_          75 VSRDNAKNTVNLQMNSLKPE-DTAVYYCAAKT  105 (127)
T ss_dssp             EEEEGGGTEEEEEECSCCGG-GCEEEEEEEES
T ss_pred             EeccCCceEEEEeeeccccc-ceeEEEEEEEe
Confidence            34455677888999999999 99999997654

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.003  Score=32.27  Aligned_cols=22  Identities=18%  Similarity=0.529  Sum_probs=19.4

Q ss_pred             EEEEEccceeeccCeEEEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ....|.+++.. |+|.|.|....
T Consensus        57 a~F~i~~v~~~-~~G~Y~C~y~~   78 (96)
T d1ugna1          57 GQFPIPSITWE-HTGRYRCYYGS   78 (96)
T ss_dssp             TEEEESSCCGG-GCEEEEEEEEE
T ss_pred             EEEEEEecCHH-HCCeEEEEEeC
Confidence            46889999999 99999998765

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0013  Score=33.89  Aligned_cols=29  Identities=10%  Similarity=0.027  Sum_probs=24.8

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+|+.+.|.|.+..+.|.+.+.|+++
T Consensus        12 ~~~~~~e~~~l~C~~~~~~~~~~i~W~k~   40 (101)
T d1iray1          12 LVSSANEIDVRPCPLNPNEHKGTITWYKD   40 (101)
T ss_dssp             EEEETTSCEEECCCCCGGGCSSEEEEECS
T ss_pred             EEEeCCCeEEEEeeCCCCCCCceEEEEEC
Confidence            46678999999998877889999999974

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.03  E-value=0.0039  Score=33.17  Aligned_cols=33  Identities=15%  Similarity=0.165  Sum_probs=26.6

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .++..+.+.+...|.|++++.+ |++.|.|....
T Consensus        68 ~tis~D~s~~t~yL~i~~L~~e-DtAvYYCAr~~  100 (118)
T d1ct8b1          68 ARLTVDTSSSTAYMQFSSLTTE-DSAIYYCARYR  100 (118)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             EEEEecCccceEEecccccCCC-cceEEEEeeec
Confidence            4455566777889999999999 99999996543

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.016  Score=29.50  Aligned_cols=31  Identities=29%  Similarity=0.567  Sum_probs=24.4

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEEC
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ..+..+...|   .+|.++... ++|.|.|.+...
T Consensus        51 ~~v~~Dpk~G---f~I~~~~~~-~~g~y~C~a~~~   81 (95)
T d1fltx_          51 KRIIWDSRKG---FIISNATYK-EIGLLTCEATVN   81 (95)
T ss_dssp             SSEEEETTTE---EEESSCCGG-GCEEEEEEEEET
T ss_pred             CEEEECCCCC---EEEeCCCcc-cCeEEEEEEEEC
Confidence            3445555554   889999999 999999999874

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.02  E-value=0.0053  Score=33.03  Aligned_cols=33  Identities=15%  Similarity=0.098  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.+...|+|.+++.+ |++.|.|....
T Consensus        68 ~tiS~D~s~nt~~L~~~~L~~e-DtavYYCAr~~  100 (126)
T d1dfbh1          68 FTISRDNAKNSLYLQMNSLRAE-DMALYYCVKGR  100 (126)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             eEEeccCCCcEEEeeeeeeccC-cceEEEEEecc
Confidence            3445567778889999999999 99999996544

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.01  E-value=0.0034  Score=33.61  Aligned_cols=33  Identities=15%  Similarity=0.133  Sum_probs=26.2

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.+.+.|+|.+++.+ |++.|.|....
T Consensus        68 ftiSrD~s~~t~yL~m~sL~~e-DTAvYYCAr~~  100 (122)
T d1bz7b1          68 FTISRDNPKNTLFLQMTSLRSE-DTAIYYCTRGG  100 (122)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGG-GCEEEEEEEEC
T ss_pred             EEEeccCCccEeEeeeeeeccc-CceEEEeecCC
Confidence            3444566677888999999999 99999996543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.00  E-value=0.0035  Score=33.69  Aligned_cols=33  Identities=15%  Similarity=0.151  Sum_probs=27.0

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.....|+|.+++.+ |++.|.|....
T Consensus        67 ~tis~D~s~~t~yLq~~sL~~e-DtAvYYCAr~~   99 (124)
T d1zvya1          67 FTISQDKAKNMAYLRMDSVKSE-DTAIYTCGATR   99 (124)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGG-GCEEEEEEECS
T ss_pred             cEEecccccceeeceeccccCC-cceEEEEeecc
Confidence            4455667778889999999999 99999997643

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.98  E-value=0.0079  Score=31.63  Aligned_cols=30  Identities=10%  Similarity=0.163  Sum_probs=23.5

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|++++|+|.... .....+.|++|.
T Consensus        10 ~~~~~~G~~v~L~C~~~~-~~~~~~~WYrQ~   39 (118)
T d2ij0c1          10 MVIVKSGTSVKIECRSLD-TNIHTMFWYRQF   39 (118)
T ss_dssp             EEEECTTCCEEEEEEECS-SCCSEEEEEEEC
T ss_pred             eEEEcCCCCEEEEEEEcC-CcccEEEEEEEc
Confidence            357889999999998753 445689999983

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=95.96  E-value=0.0043  Score=33.59  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+...+...|+|++++.+ |++.|.|....
T Consensus        70 ~tiS~D~s~nt~~Lq~~~L~~e-DTAvYYCAR~~  102 (131)
T d3c2ah1          70 FTISRDDSKNTLYLQMNSLKTE-DTAVYSCTTDG  102 (131)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EEEecccccceeecceeccccC-CceEEEEeccc
Confidence            3445566677889999999999 99999997653

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=95.94  E-value=0.0066  Score=32.26  Aligned_cols=33  Identities=18%  Similarity=0.112  Sum_probs=27.0

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.+...|.|.+++.+ |.+.|.|....
T Consensus        67 ~tiSrD~s~nt~~L~i~~l~~e-DtA~YyCAr~~   99 (118)
T d1lo4h1          67 FTISRDIVRNILTLQMSRLRSE-DTAIYYCARGT   99 (118)
T ss_dssp             BEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EEEeccccceeeeeccccccCC-cceEEEecccC
Confidence            3455567788889999999999 99999997554

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.93  E-value=0.0046  Score=33.31  Aligned_cols=31  Identities=6%  Similarity=0.082  Sum_probs=25.6

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRL   36 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~   36 (98)
                      ..+..+.+.+...|.|.+++.+ |++.|.|..
T Consensus        68 ~tiS~D~s~nt~yL~~~~L~~e-DtAvYYCAR   98 (127)
T d1n0xh1          68 VTFTADTSANTAYMELRSLRSA-DTAVYYCAR   98 (127)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGG-GCEEEEEEE
T ss_pred             ceEecccCceEEEEEEEccCCC-CceEEEEEe
Confidence            4455566777889999999999 999999964

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.93  E-value=0.0056  Score=33.25  Aligned_cols=57  Identities=21%  Similarity=0.197  Sum_probs=36.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEECCCCCeeeEeeEEEEEECCCCCCEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKAAGSGQDLHSQVYTVTVLTPPQPPKI   63 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~~~~~~~~~~~~~~l~v~~~~~~p~i   63 (98)
                      ..+..+.+...+.|.|.+++.+ |++.|.|....... ...=-....++|-.+...|.|
T Consensus        68 fTiSrD~s~~t~yL~i~~L~~e-DTAvYYCAr~~~~~-~d~WGqGT~VTVsSas~~p~~  124 (135)
T d1ieha_          68 FTISRDNAKNTLYLQMNSLKSE-DTAVYYCAKYSGGA-LDAWGQGTQVTVSSQSEQKLI  124 (135)
T ss_dssp             EEEEECTTTCCEEEEEESCCSS-SCEEEEEEEBSSSS-BCCCSCCEEEEECSSCCCCCC
T ss_pred             EEEeccCCCceeEecEeeeCcc-cceeeEEEEecCCc-cceeCCCEEEEEECCCCCCCe
Confidence            3445566677788999999999 99999997543211 111112245666555555555

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.92  E-value=0.0067  Score=32.52  Aligned_cols=33  Identities=12%  Similarity=0.096  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+.+.+...|+|.+++.+ |++.|.|....
T Consensus        68 ~tiSrD~s~~t~yL~~~~L~~e-DTA~YYCAR~~  100 (124)
T d2b1hh1          68 VTMSADRSTNTAHLQWSSLKPS-DTALYYCARLG  100 (124)
T ss_dssp             CEEEEETTTTEEEEEESSCCGG-GCEEEEEEEEE
T ss_pred             EEEeecCCCcEEEEeeeccccc-cceEEEEeecC
Confidence            4455667778889999999999 99999995443

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.92  E-value=0.0059  Score=33.02  Aligned_cols=32  Identities=19%  Similarity=0.173  Sum_probs=26.4

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ..+..+.+.+...|.|++++.+ |++.|.|...
T Consensus        68 ~tiS~D~s~~t~yL~~~sL~~e-DtA~YYCAr~   99 (130)
T d1rzga1          68 VSITADESTSTAYMELSSLRSE-DTAVFYCASP   99 (130)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEC
T ss_pred             eEEecccccceEEeeeeecCCC-ccEEEEEEEe
Confidence            3455667777889999999999 9999999754

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0044  Score=31.94  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=18.6

Q ss_pred             eecCCCcEE---EEEEcCCCCCCCeEEEEec
Q psy5866          70 VATEGRAIE---LVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        70 ~~~~g~~~~---l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+.+|....   +.|.+. |.|.|.+.|+++
T Consensus         8 ~~~~g~~~~~~ci~~~v~-G~P~P~v~W~~n   37 (107)
T d1he7a_           8 QLHTAVEMHHWCIPFSVD-GQPAPSLRWLFN   37 (107)
T ss_dssp             CCCCCCCCCEEEEEEEEC-CSSCCEEEEEET
T ss_pred             EECCCeEEEEEEEEEEEE-EecCCeEEEEEe
Confidence            444444444   555774 899999999975

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.89  E-value=0.011  Score=31.51  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=22.4

Q ss_pred             CceecCCCcEEEEEEcCCCC---CCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGS---PDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~---p~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+..   ....+.|+||.
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~   42 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQP   42 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEEC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeecccc
Confidence            45688899999999875322   23468899983

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.84  E-value=0.0049  Score=32.30  Aligned_cols=30  Identities=23%  Similarity=0.238  Sum_probs=23.5

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|+.++|+|.... .....+.|+||.
T Consensus        10 ~v~v~~G~~vtL~C~~~~-~~~~~i~Wyrq~   39 (115)
T d1lp9e1          10 LVTLTEGLPVMLNCTYQS-TYSPFLFWYVQH   39 (115)
T ss_dssp             EEEEETTSCEEECEEEEC-SSSCCEEEEEEC
T ss_pred             eEEECCCCCEEEEEEEeC-CCcCCeeEEEeC
Confidence            356889999999999753 445679999873

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.83  E-value=0.0071  Score=31.34  Aligned_cols=30  Identities=13%  Similarity=0.178  Sum_probs=23.1

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|++++|+|.... .....+.|++|.
T Consensus        10 ~ltv~~G~svtl~C~~s~-~~~~~~~WYrQ~   39 (107)
T d1ospl1          10 SFSVSLGDRVTITCKASE-DIYSRLAWYQQK   39 (107)
T ss_dssp             EEEECTTCCEEEEEEESS-CCTTCEEEEEEC
T ss_pred             EEEECCCCCEEEEEecCC-CcccccEEEEcC
Confidence            467889999999998753 334569999973

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.79  E-value=0.007  Score=31.30  Aligned_cols=31  Identities=26%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ....+.+|++++|+|.... .....+.|++|.
T Consensus         9 ~~l~v~~G~~vtL~C~~~~-~~~~~~~WYrq~   39 (107)
T d1j1pl_           9 ATLSVTPGNSVSLSCRASQ-SIGNNLHWYQQK   39 (107)
T ss_dssp             SEEEECTTCCEEEEEEESS-CCTTCEEEEEEC
T ss_pred             CeEEECCCCCEEEEEEecC-CCCcceEEEEeC
Confidence            3467889999999998653 345679999873

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.79  E-value=0.0066  Score=32.53  Aligned_cols=32  Identities=16%  Similarity=0.155  Sum_probs=26.3

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      ..+..+.+.+...|+|.+++.+ |++.|.|...
T Consensus        68 ~tiS~D~s~~t~~L~~~sL~~e-DTAvYYCAR~   99 (124)
T d1yedb1          68 ATLTADKSSSTAYMQLSSLKSE-DSAVYFCTRW   99 (124)
T ss_dssp             EEEEEETTTTEEEEEEESCCGG-GCEEEEEEEC
T ss_pred             EEEEccCCcceEEecccccCCC-cceEEEeccc
Confidence            3455667788889999999999 9999999653

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.74  E-value=0.0062  Score=31.55  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=23.9

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ....+.+|++++|+|... ......+.|++|.
T Consensus         9 ~s~~~~~G~~vtl~C~~s-~~~~~~~~WYrq~   39 (107)
T d3cx5k1           9 VSLAASLGDRVTISCRAS-QDINNFLNWYQQK   39 (107)
T ss_dssp             TTCCBCSSSCCEEEEEES-SCCTTCEEEEEEC
T ss_pred             CEEEECCCCCEEEEEEcC-CCcCCCeEEEEcC
Confidence            456788999999999865 3445569999873

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.74  E-value=0.0055  Score=31.95  Aligned_cols=29  Identities=24%  Similarity=0.205  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|+.++|+|... +.....+.|+||
T Consensus         9 ~v~v~~G~sv~L~C~~s-~~~~~~~~Wyrq   37 (113)
T d2bnqd1           9 ALSVPEGENLVLNCSFT-DSAIYNLQWFRQ   37 (113)
T ss_dssp             EEEEETTCCEEEEEEES-CCCEEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEEe-cCcccCCeEEEe
Confidence            45778999999999875 344457899987

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.73  E-value=0.0071  Score=31.30  Aligned_cols=30  Identities=20%  Similarity=0.262  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|++++|+|.... .....+.|++|.
T Consensus        10 slsv~~G~svtl~C~~s~-~~~~~~~WYrQ~   39 (106)
T d1i8ka_          10 SLSVATGEKVTIRCMTST-DIDDDMNWYQQK   39 (106)
T ss_dssp             EEECCTTCCEEEEEEESS-CCTTCEEEEEEC
T ss_pred             EEEECCCCCEEEEEEeCC-CCCccEEEEeCC
Confidence            456889999999998653 334569999873

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.71  E-value=0.0081  Score=30.99  Aligned_cols=29  Identities=24%  Similarity=0.248  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|++++|+|.... .....+.|++|
T Consensus        10 ~l~v~~G~svtl~C~~s~-~~~~~~~WYrq   38 (107)
T d1kcvl1          10 SMGMSVGEAVTLNCKASE-NVGTYVSWYQQ   38 (107)
T ss_dssp             EEEEETTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             EEeECCCCCEEEEEEecC-CcCCceEEEEc
Confidence            456889999999998753 44456999987

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.66  E-value=0.0085  Score=31.10  Aligned_cols=29  Identities=28%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|++++|+|.... .....+.|++|
T Consensus        10 s~~~~~G~svtl~C~~s~-~~~~~~~Wyrq   38 (107)
T d1c5cl1          10 SLSASLGERVSLTCRTSQ-EISGYLSWLQQ   38 (107)
T ss_dssp             EEEECTTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             EEEECCCCCEEEEEEeCC-CCCCCEEEEEc
Confidence            456889999999998753 44556999987

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=95.66  E-value=0.0061  Score=31.54  Aligned_cols=31  Identities=16%  Similarity=0.215  Sum_probs=22.9

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|+.++|+|..........+.|++|.
T Consensus        10 ~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~   40 (108)
T d2fx7l1          10 TQSLSPGERATLSCRASQSVGNNKLAWYQQR   40 (108)
T ss_dssp             EEEECTTCCEEEEEEESSCCGGGCEEEEEEC
T ss_pred             eEEECCCCCEEEEEEeecCCCCccceeEecc
Confidence            3568899999999986533334568999873

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=95.65  E-value=0.0055  Score=31.51  Aligned_cols=27  Identities=19%  Similarity=0.199  Sum_probs=21.7

Q ss_pred             ecCCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      +..|+..+|.|.+.+.+|. ..++|+++
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~n   41 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRN   41 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEES
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeC
Confidence            4457788999999988874 68999875

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.65  E-value=0.0029  Score=33.62  Aligned_cols=31  Identities=16%  Similarity=0.195  Sum_probs=24.9

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      .+..+...+...|+|++++.+ |++.|.|...
T Consensus        69 tisrD~s~~t~~L~~~sL~~e-DTAvYYCAr~   99 (117)
T d1b2wh1          69 TISRDKSKNTLYLQMNSLRPE-DTAVYYCARG   99 (117)
T ss_dssp             EEECCTTTTEEEEEECSCCGG-GCEEEECCEE
T ss_pred             EEEeccccceEEeeeccccCC-cceEEEEccc
Confidence            344456677889999999999 9999999643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.65  E-value=0.0099  Score=30.78  Aligned_cols=29  Identities=24%  Similarity=0.339  Sum_probs=22.9

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|++++|+|....+  ...+.|+||.
T Consensus        10 ~~~~~~G~~vtl~C~~s~~--~~~~~WYrQ~   38 (110)
T d2aq2a1          10 NKVAVTGEKVTLSCQQTNN--HNNMYWYRQD   38 (110)
T ss_dssp             EEEECTTCCEEEEEEESSC--CSEEEEEEEC
T ss_pred             eEEEcCCCCEEEEEEECCC--cCcEEEEEEc
Confidence            4567899999999987543  4679999984

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.64  E-value=0.0092  Score=32.33  Aligned_cols=33  Identities=12%  Similarity=0.167  Sum_probs=27.1

Q ss_pred             eEEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           5 EIIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         5 ~~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+..+...+...|+|.+++.+ |++.|.|....
T Consensus        67 ~tis~D~s~~t~~L~~~~L~~e-DtA~YYCAr~~   99 (133)
T d1rzfh1          67 VTISADESTRTVYLHLRGLRSD-DTAVYYCASNS   99 (133)
T ss_dssp             EEEEEETTTTEEEEEECSCCGG-GCEEEEEEEEE
T ss_pred             EEEEeccCcceeEEeeccCCCC-CCEEEEeeecc
Confidence            4455567778889999999999 99999996654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=95.63  E-value=0.0041  Score=32.50  Aligned_cols=31  Identities=10%  Similarity=0.174  Sum_probs=23.1

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      +...+.+|++++|.|.... .....+.|++|.
T Consensus         8 ~sl~~~~G~svtl~C~~~~-~~~~~i~WYrQ~   38 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNN-IGSRSVHWYQQK   38 (109)
T ss_dssp             SEEEECTTSCEEEEEECTT-GGGSCCEEEEEC
T ss_pred             CeEEECCCCCEEEEEEcCC-CCCcceeeeecc
Confidence            3457789999999999653 334569999873

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.60  E-value=0.0072  Score=31.50  Aligned_cols=31  Identities=23%  Similarity=0.262  Sum_probs=24.2

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ....+.+|+.++|.|... ..+...+.|++|.
T Consensus         8 ~~~~~~~G~~vtL~C~~~-~~~~~~~~Wyrq~   38 (114)
T d2cdea1           8 QSLIILEGKNCTLQCNYT-VSPFSNLRWYKQD   38 (114)
T ss_dssp             SEEEEETTCCCEEEEEEC-CSCCSEEEEEEEC
T ss_pred             CEEEEeCCCCEEEEEEEc-CCCccCceEEEec
Confidence            346788999999999975 3456779999873

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.60  E-value=0.0069  Score=31.46  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=23.1

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      +...+.+|++++|+|....... ..-+.|+||.
T Consensus         8 ~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~   40 (111)
T d1cd0a_           8 HSVSESPGKTVTISCTRSSGNIDSNYVQWYQQR   40 (111)
T ss_dssp             SEEEECTTSCEEEEEEESSSCGGGSCCEEEEEC
T ss_pred             CeeEECCCCCEEEEEEECCCCccCceEEEeeec
Confidence            3467889999999998754332 2348999983

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=95.57  E-value=0.01  Score=31.04  Aligned_cols=30  Identities=10%  Similarity=0.123  Sum_probs=22.7

Q ss_pred             CceecCCCcEEEEEEcCCCC-CCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGS-PDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~   97 (98)
                      .....+|+.++|+|...+.. ....+.|++|
T Consensus         8 s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq   38 (112)
T d1sq2n_           8 SVTKETGESLTINCVLRDASYALGSTCWYRK   38 (112)
T ss_dssp             EEEECTTCCEEEEEEECSCSSCCCCEEEEEE
T ss_pred             EEEEcCCCCEEEEEEECCCcccCCceEEEEe
Confidence            45677899999999865332 4567999987

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.011  Score=29.86  Aligned_cols=24  Identities=8%  Similarity=0.235  Sum_probs=20.2

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLK   37 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~   37 (98)
                      .......|.+++.. |+|.|.|.-.
T Consensus        51 ~~~a~F~i~~v~~~-~~G~Y~C~~~   74 (93)
T d1olla2          51 KVQAEFPLGPVTTA-HRGTYRCFGS   74 (93)
T ss_dssp             SSEEEEEEEECCGG-GCEEEEEECE
T ss_pred             CceeEEEecccChh-cCceEEEEeE
Confidence            45677899999999 9999999643

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=95.55  E-value=0.011  Score=30.55  Aligned_cols=31  Identities=23%  Similarity=0.276  Sum_probs=23.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ....+.+|++++|+|.... .-...+.|++|.
T Consensus         8 ~sl~~~~G~svtL~C~~~~-~~~~~~~WYrq~   38 (106)
T d1op3k1           8 STLSASVGDTITITCRASQ-SIETWLAWYQQK   38 (106)
T ss_dssp             SEEEECTTCEEEEEEEESS-CCTTCEEEEEEC
T ss_pred             CeEEECCCCCEEEEEEeCC-CCCCcEEEEecC
Confidence            3467889999999998753 334568999873

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.53  E-value=0.011  Score=30.57  Aligned_cols=29  Identities=14%  Similarity=0.210  Sum_probs=22.2

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|++++|.|.... .....+.|++|
T Consensus        10 ~l~~~~G~svtl~C~~s~-~~~~~~~WYrQ   38 (107)
T d1mexl1          10 FMSTSLGNRVSVTCKASQ-NVGTNVAWFQQ   38 (107)
T ss_dssp             EEEECTTSCEEEEEEESS-CCTTCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCC-CCCCceEEEec
Confidence            356789999999998643 33456899987

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.52  E-value=0.01  Score=30.63  Aligned_cols=30  Identities=17%  Similarity=0.222  Sum_probs=22.9

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ....+.+|++++|+|... ......+.|++|
T Consensus         8 ~~l~~~~G~svtl~C~~s-~~~~~~~~WYrq   37 (106)
T d1a0ql1           8 SSLSASLGGKVTITCKAS-QDIKKYIGWYQH   37 (106)
T ss_dssp             SEEEECTTCCEEEEEEES-SCCTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEcC-CCCCCCeEEEEC
Confidence            345688999999999864 344456999987

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.013  Score=29.71  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=25.3

Q ss_pred             CCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        60 ~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|.|...+...+..|++++|.|.+.  .+...+.|++
T Consensus         7 kPsLsa~P~~~V~~G~~VTL~C~~~--~~~~~f~l~k   41 (99)
T d1ucta1           7 MPFISAKSSPVIPLDGSVKIQCQAI--REAYLTQLMI   41 (99)
T ss_dssp             CCCEEESSCSEEETTCCEEEEECCC--TTCSEEEEEE
T ss_pred             CCEEEecCCCceeCCCeEEEEEcCC--CCCcEEEEEE
Confidence            4555434556788999999999864  4566788875

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.49  E-value=0.0095  Score=30.66  Aligned_cols=29  Identities=24%  Similarity=0.125  Sum_probs=22.3

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|+.++|+|.... .....+.|++|
T Consensus         8 ~~~~~~G~~vtl~C~~~~-~~~~~~~WYrq   36 (110)
T d1u3ha1           8 SLTVWEGETAILNCSYEN-SAFDYFPWYQQ   36 (110)
T ss_dssp             SEEEETTSCEEEEEEECC-TTEEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEecC-CCCcEEEEEee
Confidence            456789999999998753 33446899987

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=95.47  E-value=0.0099  Score=31.01  Aligned_cols=31  Identities=10%  Similarity=0.128  Sum_probs=23.0

Q ss_pred             CCceecCCCcEEEEEEcCCCC-CCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGS-PDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~   97 (98)
                      ......+|++++|+|...... ....+.|++|
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq   39 (113)
T d1vesa_           8 RTATKETGESLTINCVLRDASFELKDTGWYRT   39 (113)
T ss_dssp             SEEEECTTCCEEEEEEEESCSSCCCEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEECCCcccCCccceeee
Confidence            346778999999999875332 3456899987

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.46  E-value=0.011  Score=30.71  Aligned_cols=30  Identities=17%  Similarity=0.216  Sum_probs=22.9

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|++++|.|.... .....+.|++|.
T Consensus        10 ~l~~~~G~svtL~C~~s~-~~~~~i~WYrQ~   39 (109)
T d1mqkl_          10 SLSASVGETVTITCRASE-NIYSYLAWYQQK   39 (109)
T ss_dssp             EEEECTTCCEEEEEEESS-CCTTCEEEEEEC
T ss_pred             EEEECCCCCEEEEEEeCC-CcCcccceeecc
Confidence            456788999999998753 334569999973

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=95.46  E-value=0.011  Score=30.55  Aligned_cols=30  Identities=20%  Similarity=0.278  Sum_probs=23.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+..+.+|++++|+|.... .....+.|++|
T Consensus         9 ~sl~~~~G~svtL~C~~s~-~~~~~~~WYrq   38 (107)
T d1tjgl1           9 SSLSASVGDRITITCRASQ-GVTSALAWYRQ   38 (107)
T ss_dssp             SEEEECTTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECC-CCCccEEEEec
Confidence            3467889999999999753 33567999987

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.46  E-value=0.0048  Score=32.94  Aligned_cols=32  Identities=13%  Similarity=0.215  Sum_probs=25.5

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+..+.+.+...|+|.+++.+ |++.|.|....
T Consensus        71 tiSrD~s~nt~yL~~~~L~~e-DTAvYYCAr~~  102 (121)
T d1nfdf1          71 TISRDDSRNSIYLQMNRLRVD-DTAIYYCTRAG  102 (121)
T ss_dssp             CCEECTTTSEEEEEEESCCGG-GCEECEEEEEE
T ss_pred             EEccccccceeeceecccCCC-cceEEEEeccC
Confidence            344556677888999999999 99999996543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.45  E-value=0.011  Score=30.53  Aligned_cols=29  Identities=21%  Similarity=0.280  Sum_probs=22.7

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|++++|.|.... .....+.|++|
T Consensus        10 sl~~~~G~svtl~C~~s~-~~~~~~~WYrq   38 (107)
T d1d5il1          10 SMYASLGERVTITCKASQ-DINSYLSWFQQ   38 (107)
T ss_dssp             EEEECTTCCEEEEEEESS-CCTTCEEEEEE
T ss_pred             EEEECCCCCEEEEEEcCC-CCCCccceeEe
Confidence            456889999999998753 44567899987

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.43  E-value=0.012  Score=30.44  Aligned_cols=28  Identities=18%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|++++|+|....+  ...+.|++|
T Consensus         8 ~~~~~~G~svtl~C~~~~~--~~~~~WYrQ   35 (111)
T d2esve1           8 HSVIEKGQTVTLRCDPISG--HDNLYWYRR   35 (111)
T ss_dssp             EEEEETTCCEEEEEECCTT--CSEEEEEEE
T ss_pred             EEEECCCCCEEEEEEECCC--CceEEEEEE
Confidence            3568899999999986433  457999987

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.41  E-value=0.012  Score=30.54  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=23.2

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|++++|+|.... .....+.|++|.
T Consensus        10 ~l~~~~G~svtL~C~~s~-~~~~~~~WYrq~   39 (108)
T d1jhll_          10 YLVASPGETITINCRASK-SISKSLAWYQEK   39 (108)
T ss_dssp             EEEECTTSCEEEEEEESS-CCTTCEEEEEEC
T ss_pred             eEEecCCCCEEEEEEccC-CcCCceEEEEcc
Confidence            456789999999998764 345579999873

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.38  E-value=0.022  Score=30.09  Aligned_cols=32  Identities=13%  Similarity=0.150  Sum_probs=23.8

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+.+|+++.|+|.+.+..- .-.+.|+||.
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~   39 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQK   39 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeC
Confidence            3467889999999999874322 3468999984

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.38  E-value=0.013  Score=30.44  Aligned_cols=28  Identities=29%  Similarity=0.434  Sum_probs=22.2

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|+.++|.|....+  ...+.|++|
T Consensus         8 ~~~~~~G~svtl~C~~~~~--~~~~~WYrQ   35 (113)
T d2ntsp1           8 YLIKTRGQQVTLSCSPISG--HRSVSWYQQ   35 (113)
T ss_dssp             EEEEETTCCEEEEEECSTT--CCEEEEEEE
T ss_pred             eEEECCCCCEEEEEEECCC--CCEEEEEEe
Confidence            3567899999999996543  357899997

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.37  E-value=0.015  Score=30.08  Aligned_cols=30  Identities=20%  Similarity=0.092  Sum_probs=22.8

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +...+.+|+.++|.|.... .....+.|++|
T Consensus         8 ~s~~~~~G~svtl~C~~s~-~~~~~~~WYrq   37 (111)
T d1bd2d1           8 PSLSVQEGRISILNCDYTN-SMFDYFLWYKK   37 (111)
T ss_dssp             SEEEEETTSCEEEEEEECC-TTCCEEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEeCC-CCCCeEEEEEE
Confidence            3456789999999998653 44556899987

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=95.34  E-value=0.016  Score=30.80  Aligned_cols=31  Identities=23%  Similarity=0.180  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCC---CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP---DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+...   ...+.|+||.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~   42 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQA   42 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEEC
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCC
Confidence            457889999999999864332   2357899984

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.23  E-value=0.016  Score=30.00  Aligned_cols=30  Identities=27%  Similarity=0.288  Sum_probs=22.7

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|++++|.|.... .-...+.|++|.
T Consensus        10 ~~~~~~G~~vtL~C~~~~-~~~~~~~WYrQ~   39 (112)
T d1fo0b_          10 WRLVPRGQAVNLRCILKN-SQYPWMSWYQQD   39 (112)
T ss_dssp             EEECCTTCCEEEEEEESC-TTCCEEEEEEEC
T ss_pred             eEEECCCCCEEEEEEEec-CCCCcEEEEeEC
Confidence            346788999999998653 334578999984

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.22  E-value=0.017  Score=29.89  Aligned_cols=29  Identities=21%  Similarity=0.252  Sum_probs=22.4

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|++++|.|....  ....+.|++|.
T Consensus         8 ~~~~~~G~svtl~C~~~~--~~~~i~WYrQ~   36 (112)
T d1kgce1           8 YKVAKRGQDVALRCDPIS--GHVSLFWYQQA   36 (112)
T ss_dssp             EEEEETTCCEEEEEECCT--TCCEEEEEEEC
T ss_pred             eEEECCCCCEEEEEEECC--CCCEEEeeeee
Confidence            356789999999998643  34679999973

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.21  E-value=0.016  Score=30.17  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=22.6

Q ss_pred             CceecCCCcEEEEEEcCCCC----CCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGS----PDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~~   98 (98)
                      ...+.+|++++|.|....+.    ....+.|++|.
T Consensus        10 slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~   44 (112)
T d1mjul1          10 SVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQR   44 (112)
T ss_dssp             EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred             EEEECCCCCEEEEEEECCCCccCCCCceeEEEECC
Confidence            45678999999999865432    23468999873

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.027  Score=28.35  Aligned_cols=36  Identities=8%  Similarity=0.228  Sum_probs=25.7

Q ss_pred             CCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        60 ~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +|.|...+...+..|++++|.|...  .+...+.|++.
T Consensus         4 KPsLsa~P~~~V~~G~~VTL~C~~~--~~~~~f~L~k~   39 (95)
T d1olla1           4 KPFIWAEPHFMVPKEKQVTICCQGN--YGAVEYQLHFE   39 (95)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECC--TTCCEEEEEET
T ss_pred             CCEEEeeCCCcccCCCcEEEEEecC--CCccEEEEEEC
Confidence            4566444566788999999999964  34567777763

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=95.20  E-value=0.019  Score=29.75  Aligned_cols=32  Identities=19%  Similarity=0.196  Sum_probs=23.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCC--CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP--DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~   98 (98)
                      ....+.+|++++|+|....+..  ...+.|++|.
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~   41 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQH   41 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEEC
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeee
Confidence            3467889999999998754332  2358999973

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.18  E-value=0.015  Score=30.46  Aligned_cols=32  Identities=16%  Similarity=0.229  Sum_probs=23.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .--+.|++|.
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~   40 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQA   40 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeC
Confidence            3467889999999999863222 2358999884

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.14  E-value=0.016  Score=30.16  Aligned_cols=31  Identities=13%  Similarity=0.164  Sum_probs=21.9

Q ss_pred             CceecCCCcEEEEEEcCCCCC---CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP---DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~   98 (98)
                      ...+.+|++++|+|....+..   ..-+.|++|.
T Consensus        10 s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~   43 (111)
T d2gsia1          10 SLAVSLGQPATISCGASKSVRTSGYSYMDWNQQK   43 (111)
T ss_dssp             EEEEETTSCEEEEEEESSCCCCSSSCCEEEEEEC
T ss_pred             EEEECCCCCEEEEEEECCCCccCCccceEEEEEC
Confidence            457889999999998643222   2248999973

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.11  E-value=0.02  Score=30.42  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+.+.|+|.+.+..- ...+.|+||.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~   40 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQS   40 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeec
Confidence            356788999999999863322 3468999984

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.09  E-value=0.017  Score=29.84  Aligned_cols=31  Identities=16%  Similarity=0.175  Sum_probs=23.5

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ....+.+|+.++|.|.... .....+.|++|.
T Consensus        11 ~~l~~~~G~svtL~C~~s~-~~~~~~~WYrq~   41 (109)
T d1bwwa_          11 SSLSASVGDRVTITCQASQ-DIIKYLNWYQQK   41 (109)
T ss_dssp             SEEEECTTCCEEEEEEESS-CCTTCEEEEEEC
T ss_pred             CEEEECCCCCEEEEEEecC-CCCCcceEeeec
Confidence            3467889999999999753 334568999873

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.08  E-value=0.018  Score=29.86  Aligned_cols=30  Identities=17%  Similarity=0.110  Sum_probs=23.0

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ....+.+|+.++|.|....  ....+.|++|.
T Consensus         9 ~~~~v~~G~~vtl~C~~~~--~~~~~~WYrQ~   38 (113)
T d1h5ba_           9 SALSLHEGTDSALRCNFTT--TMRSVQWFRQN   38 (113)
T ss_dssp             SEEEEETTCCEEEEEEESS--CCSEEEEEEEC
T ss_pred             CEEEEcCCCCEEEEEEEec--CCccceEEEee
Confidence            3457889999999999753  23579999973

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.02  E-value=0.018  Score=29.81  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=21.8

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ..+.+|++++|+|....+  ...+.|++|
T Consensus         9 ~~~~~G~svtl~C~~s~~--~~~~~WYrQ   35 (112)
T d2bnub1           9 QVLKTGQSMTLQCAQDMN--HEYMSWYRQ   35 (112)
T ss_dssp             EEEETTCCEEEEEEESSC--CSEEEEEEE
T ss_pred             EEECCCCCEEEEEEEECC--ccceEeccc
Confidence            468899999999987533  467999997

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.02  E-value=0.0094  Score=30.39  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=21.4

Q ss_pred             ecCCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      ...|...+|.|.+.+.+|. ..++|+++
T Consensus        15 ~~~~~~~tL~C~v~gf~P~~i~V~W~~~   42 (99)
T d1lk2b_          15 PENGKPNILNCYVTQFHPPHIEIQMLKN   42 (99)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEET
T ss_pred             ccCCCcEEEEEEEEEEECCCcEEEEeeC
Confidence            3457778999999987885 47999875

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=95.00  E-value=0.025  Score=30.15  Aligned_cols=30  Identities=20%  Similarity=0.234  Sum_probs=21.6

Q ss_pred             CceecCCCcEEEEEEcCCCCCC---CeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPD---PQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~   97 (98)
                      ...+++|++++|+|.+.+..-.   ..+.|+||
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ   41 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQ   41 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeecccc
Confidence            3578889999999997632222   25689987

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=94.99  E-value=0.018  Score=29.88  Aligned_cols=31  Identities=10%  Similarity=0.072  Sum_probs=21.7

Q ss_pred             CceecCCCcEEEEEEcCCCCC---CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP---DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~   98 (98)
                      ...+.+|+.++|+|....+.+   ...+.|++|.
T Consensus        10 ~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~   43 (111)
T d1j05a_          10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQK   43 (111)
T ss_dssp             EEECCTTSCEEEEEEESSCCBSSSCBCEEEEEEC
T ss_pred             EEEECCCCCEEEEEEeccCCccCCceeEEEEEcc
Confidence            356789999999997643222   2349999873

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.85  E-value=0.019  Score=29.96  Aligned_cols=29  Identities=17%  Similarity=0.150  Sum_probs=22.6

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|++++|.|....+  ...+.|++|.
T Consensus         9 ~~~~~~G~svtl~C~~s~~--~~~~~WYrQ~   37 (115)
T d1ogad1           9 FLSIQEGENLTVYCNSSSV--FSSLQWYRQE   37 (115)
T ss_dssp             EEEEETTCCEEEEEECSSC--CSCEEEEEEC
T ss_pred             eEEECCCCCEEEEEEECCC--CceEEEEecC
Confidence            4678899999999997532  3579999873

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.85  E-value=0.0063  Score=31.64  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=22.7

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      +...+.+|++++|+|.... .....+.|++|.
T Consensus         7 ~s~~~~~G~svtl~C~~~~-~~~~~i~WYrQ~   37 (108)
T d1nfde1           7 SSASVTVGETVKITCSGDQ-LPKNFAYWFQQK   37 (108)
T ss_dssp             SEEEEETTSCCCEEEEETT-GGGSCCEEEEEC
T ss_pred             CeeEECCCCCEEEEEECCC-CCCccEEEEecc
Confidence            3456778999999998643 334468999873

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=94.82  E-value=0.01  Score=30.33  Aligned_cols=27  Identities=19%  Similarity=0.231  Sum_probs=21.1

Q ss_pred             ecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      ...++.+.|.|.+.+.+| ...++|+++
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~n   41 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKN   41 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEET
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEEC
Confidence            445677899999998877 458999874

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.82  E-value=0.021  Score=30.26  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=22.9

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+.+|+++.|+|.+.+... ...+.|+||.
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~   39 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRRA   39 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEEC
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeeeC
Confidence            357889999999999864332 3357899983

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.80  E-value=0.014  Score=30.39  Aligned_cols=30  Identities=27%  Similarity=0.316  Sum_probs=23.2

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|+.++|+|.... .....+.|++|.
T Consensus         9 ~v~~~~G~~vtl~C~~s~-~~~~~i~WYrQ~   38 (115)
T d1j8hd1           9 HVSVSEGALVLLRCNYSS-SVPPYLFWYVQY   38 (115)
T ss_dssp             EEEEETTSCEEECCEEEC-SSCCEEEEEEEC
T ss_pred             eEEEcCCCCEEEEEEeCC-CCceeEEEEEcc
Confidence            467889999999998753 334579999873

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.77  E-value=0.043  Score=29.51  Aligned_cols=32  Identities=22%  Similarity=0.350  Sum_probs=23.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~   39 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQA   39 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSCCTTCEEEEEEEC
T ss_pred             CCceECCCCCeEEEEEEeCCCccCCCcceEEeC
Confidence            3456789999999999974332 3468999984

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0099  Score=30.54  Aligned_cols=28  Identities=14%  Similarity=0.132  Sum_probs=23.0

Q ss_pred             ceecCCCcEEEEE------EcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVC------STSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C------~~~~~~p~~~~~W~~~   97 (98)
                      ..+..|....|.|      .+ .+.|.|.+.|+++
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~-~~~p~P~i~W~kd   42 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKN-ENNELPKLQWYKD   42 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCB-TTTBCCCCEEEET
T ss_pred             EEEecCCCEEEEcCCcccccc-CCCCCCEEEEEEC
Confidence            4577888999999      33 5889999999985

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.012  Score=30.11  Aligned_cols=27  Identities=26%  Similarity=0.415  Sum_probs=21.8

Q ss_pred             ecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      ...|....|.|.+.+.+|.. .++|+++
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~n   43 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKN   43 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEET
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEEC
Confidence            45678889999999887855 7999875

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=94.75  E-value=0.045  Score=28.92  Aligned_cols=32  Identities=25%  Similarity=0.302  Sum_probs=23.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~   40 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQK   40 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEEC
Confidence            3467888999999999864332 3468999884

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=94.75  E-value=0.02  Score=29.21  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=21.2

Q ss_pred             ecCCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      ...+...+|.|.+.+.+|. ..++|+++
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~n   43 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSN   43 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEET
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEEC
Confidence            4456678899999988885 57999875

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=94.74  E-value=0.012  Score=30.20  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=21.1

Q ss_pred             ecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      ...|+..+|.|.+.+.+|.. .+.|+++
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~n   43 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRN   43 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEET
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEEC
Confidence            34566788999999888854 8999875

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.73  E-value=0.017  Score=30.44  Aligned_cols=29  Identities=21%  Similarity=0.203  Sum_probs=22.3

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|++++|+|... ..-...+.|++|
T Consensus        10 sv~~~~G~svtl~C~~s-~~~~~~i~WYrQ   38 (119)
T d1f3rb2          10 LLSASVGDRVTLSCKGS-QNINNYLAWYQQ   38 (119)
T ss_dssp             EECCCTTCCEEEEEECS-SCCBTCEEEEEE
T ss_pred             EEEECCCCCEEEEEEeC-CCCcceeEEeee
Confidence            35678899999999865 343456899987

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.03  Score=28.35  Aligned_cols=25  Identities=8%  Similarity=0.149  Sum_probs=20.8

Q ss_pred             CeEEEEEccceeeccCeEEEEEEEEC
Q psy5866          14 GRYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        14 ~~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      ......|.+++.. |+|.|.|.-...
T Consensus        54 ~~a~F~l~~v~~~-~~G~Y~C~y~~~   78 (96)
T d1ucta2          54 HPANFSLGPVDLN-VSGIYRCYGWYN   78 (96)
T ss_dssp             SSEEEECCSCCGG-GCEEEEEEEECT
T ss_pred             cccEEEEeccccc-cCcEEEEEEEcC
Confidence            3467889999999 999999987654

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.72  E-value=0.017  Score=29.82  Aligned_cols=31  Identities=19%  Similarity=0.225  Sum_probs=22.9

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ....+.+|+.++|.|.... .....+.|++|.
T Consensus         8 ~~~~~~~G~~vtl~C~~~~-~~~~~~~WYrQ~   38 (110)
T d1ac6a_           8 GQVALSEEDFLTIHCNYSA-SGYPALFWYVQY   38 (110)
T ss_dssp             SEEEEETTEEEEECEEEEC-SSCCEEEEEEEC
T ss_pred             CeEEECCCCCEEEEEEecC-CCCcceEEEEcC
Confidence            3457889999999997543 334569999973

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.70  E-value=0.035  Score=27.58  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=20.0

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .+..++|.|.+.+.+|. ..++|+++
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~   39 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLN   39 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEET
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEEC
Confidence            45679999999987874 47899875

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.69  E-value=0.028  Score=29.69  Aligned_cols=31  Identities=23%  Similarity=0.306  Sum_probs=23.0

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      ....+.+|+++.|+|.+.+..- ..-+.|+||
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ   39 (117)
T d1mfah1           8 GTVVARPGASVKMSCKASGYTFTNYWMHWIKQ   39 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CCceECCCCCEEEEEEEcccCCCCCceEeeee
Confidence            4457788999999999874332 335789987

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.68  E-value=0.025  Score=29.84  Aligned_cols=30  Identities=27%  Similarity=0.368  Sum_probs=22.4

Q ss_pred             CceecCCCcEEEEEEcCCCC-CCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGS-PDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~   97 (98)
                      ...+++|+++.|+|.+.+.. ....+.|++|
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ   39 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQ   39 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEE
Confidence            35688899999999986332 2346899988

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.68  E-value=0.031  Score=29.51  Aligned_cols=31  Identities=19%  Similarity=0.332  Sum_probs=22.6

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+.+|+++.|+|.+.+... .-.+.|+||.
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~   40 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQA   40 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEEC
Confidence            456788999999999863222 3357899984

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.66  E-value=0.0034  Score=33.33  Aligned_cols=32  Identities=16%  Similarity=0.272  Sum_probs=25.6

Q ss_pred             EEEEeCCCCeEEEEEccceeeccCeEEEEEEEE
Q psy5866           6 IIDYRPDSGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus         6 ~~~~~~~~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+..+.+.+...|+|.+++.+ |++.|.|....
T Consensus        68 tis~D~s~~tv~L~~~~L~~e-DTAvYyCAr~~   99 (116)
T d1fn4b1          68 SISRDTSKNQVFLKMNSLQTD-DTGTYYCTRDL   99 (116)
T ss_dssp             CCEEEGGGTEEECCEESCCCC-CCEEEEEEEEC
T ss_pred             EEccccccchhhcceeccCCC-CCEEEEEEeec
Confidence            344566677888999999999 99999996543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.65  E-value=0.027  Score=29.83  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=23.2

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      -...+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~   40 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQR   40 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeC
Confidence            3456788999999999864322 2358999984

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.65  E-value=0.037  Score=29.61  Aligned_cols=31  Identities=23%  Similarity=0.383  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+.+|+++.|+|.+.+... .-.+.|+||.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~   39 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQA   39 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEEC
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeC
Confidence            357889999999999874333 3468999984

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.62  E-value=0.025  Score=30.19  Aligned_cols=31  Identities=19%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+... .-.+.|+||.
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~   39 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQA   39 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEEC
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccC
Confidence            357889999999999864332 3468999983

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.59  E-value=0.034  Score=29.42  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+.+|+.+.|+|.+.+..- .-.+.|+||.
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~   40 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQA   40 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeccccC
Confidence            3456889999999999864322 3458999884

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.58  E-value=0.04  Score=29.32  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=23.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~   41 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQA   41 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEEC
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeC
Confidence            3457889999999999874322 2358899884

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.57  E-value=0.017  Score=30.05  Aligned_cols=29  Identities=28%  Similarity=0.387  Sum_probs=22.6

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|++++|.|... ......+.|++|
T Consensus         9 ~v~v~~G~svtl~C~~~-~~~~~~~~Wyrq   37 (115)
T d1i9ea_           9 RVTVSEGASLQLRCKYS-YSATPYLFWYVQ   37 (115)
T ss_dssp             EEEEETTSCEEECCEEE-CSSCCEEEEEEE
T ss_pred             eEEECCCCCEEEEEEEc-CCCCCCEEEEEE
Confidence            46788999999999864 334567899987

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.015  Score=29.80  Aligned_cols=26  Identities=31%  Similarity=0.402  Sum_probs=20.2

Q ss_pred             cCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          72 TEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        72 ~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      ..+..+.|.|.+.+..|.. .+.|+++
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~   45 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLED   45 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEET
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEEC
Confidence            3455689999998778865 6999874

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.56  E-value=0.04  Score=29.68  Aligned_cols=31  Identities=26%  Similarity=0.294  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCC---CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP---DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+...   ...+.|+||.
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~   42 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQP   42 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEEC
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEEC
Confidence            357889999999999764332   2358899984

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.53  E-value=0.039  Score=29.14  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=23.2

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+.+|+++.|+|.+.+..- .-.+.|+||.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~   40 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQP   40 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEEC
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCC
Confidence            457889999999999874322 2358899984

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.02  Score=29.40  Aligned_cols=28  Identities=18%  Similarity=0.203  Sum_probs=22.1

Q ss_pred             eecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          70 VATEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      ....+..+.|.|.+.+.+|.. .+.|+++
T Consensus        16 e~~~~~~~tl~C~~~~f~P~~i~v~W~~~   44 (108)
T d1ow0a2          16 ELALNELVTLTCLARGFSPKDVLVRWLQG   44 (108)
T ss_dssp             TTTSSSEEEEEEEEEEESSSCCEEEEEET
T ss_pred             HhccCCceEEEEEEEEeECCCEEEEEEEC
Confidence            344677899999998878855 8999864

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=94.52  E-value=0.04  Score=29.19  Aligned_cols=30  Identities=17%  Similarity=0.203  Sum_probs=22.2

Q ss_pred             CceecCCCcEEEEEEcCCCCCC--CeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPD--PQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~   97 (98)
                      ...+++|+++.|+|.+.+..-.  -.+.|+||
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ   40 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQ   40 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEE
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceE
Confidence            4678899999999998743322  24689987

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.48  E-value=0.017  Score=29.96  Aligned_cols=29  Identities=17%  Similarity=0.161  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|++++|+|....  ....+.|++|.
T Consensus         8 ~~~~~~G~svtl~C~~s~--~~~~~~WYrQ~   36 (114)
T d1ogae1           8 YLFRKEGQNVTLSCEQNL--NHDAMYWYRQD   36 (114)
T ss_dssp             EEEEETTCCEEECCEECS--CCSEEEEEEEC
T ss_pred             eEEEcCCCCEEEEEEEec--CCCcEEEEeec
Confidence            357889999999999753  34679999983

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.47  E-value=0.045  Score=28.88  Aligned_cols=31  Identities=29%  Similarity=0.291  Sum_probs=23.0

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~   40 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQR   40 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEEC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeC
Confidence            456788999999999874322 3357999984

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.46  E-value=0.064  Score=27.69  Aligned_cols=29  Identities=21%  Similarity=0.182  Sum_probs=20.8

Q ss_pred             ceecCCCcEEEEEEcC--CCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTS--GGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~   97 (98)
                      ..+.+|+++.|.|...  .......+.|+++
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~   42 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRS   42 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeec
Confidence            5677899999999853  2223456899875

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.048  Score=28.33  Aligned_cols=30  Identities=17%  Similarity=0.271  Sum_probs=20.9

Q ss_pred             ceecCCCcEEEEEEcCCCCCCC--eEEEEecC
Q psy5866          69 PVATEGRAIELVCSTSGGSPDP--QISVTLQV   98 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~   98 (98)
                      ..+.+|+.++|.|....+....  .+.|+||.
T Consensus         9 ~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~   40 (118)
T d1i8lc_           9 VLASSRGIASFVCEYASPGKATEVRVTVLRQA   40 (118)
T ss_dssp             EECCSSSCEEEEEEECCCSCCSEEEEEEEEES
T ss_pred             EEEeCCCcEEEEEEccccccccceeEEEEEEC
Confidence            4567888999999865333222  48899984

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=94.45  E-value=0.025  Score=29.94  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=22.2

Q ss_pred             CceecCCCcEEEEEEcCCCC-CCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGS-PDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~   98 (98)
                      +....+|+++.|+|.+.+.. -...+.|++|.
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~   41 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRER   41 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEEC
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEEC
Confidence            35667899999999875322 23468999973

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.44  E-value=0.044  Score=28.95  Aligned_cols=32  Identities=16%  Similarity=0.222  Sum_probs=23.1

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+.+|+++.|+|.+.+..- .-.+.|+||.
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~   40 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQS   40 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecceeC
Confidence            3457889999999999863222 2358999884

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.42  E-value=0.042  Score=28.94  Aligned_cols=31  Identities=23%  Similarity=0.249  Sum_probs=23.1

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+.+|+++.|+|.+.+... .--+.|++|.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~   40 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQP   40 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEEC
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceEC
Confidence            457889999999999864332 3368899983

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.41  E-value=0.029  Score=29.77  Aligned_cols=31  Identities=26%  Similarity=0.268  Sum_probs=22.9

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+..- .-.+.|++|.
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~   40 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQP   40 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEEC
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeEC
Confidence            357889999999999864322 2358899984

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.41  E-value=0.038  Score=29.33  Aligned_cols=32  Identities=22%  Similarity=0.338  Sum_probs=23.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+.+.|+|.+.+..- ...+.|+||.
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~   40 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQR   40 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeEC
Confidence            3457889999999999863322 3468899984

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.39  E-value=0.037  Score=28.75  Aligned_cols=31  Identities=16%  Similarity=0.155  Sum_probs=22.7

Q ss_pred             CceecCCCcEEEEEEcCCCC----CCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGS----PDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~~   98 (98)
                      ...+.+|+.++|+|....+.    ....+.|++|.
T Consensus        11 s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~   45 (113)
T d1n4xl_          11 YLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQK   45 (113)
T ss_dssp             EEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEEC
T ss_pred             EEEECCCCCEEEEEEeccccccCCCceEeEEEecC
Confidence            46788999999999864322    22468999874

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=94.37  E-value=0.05  Score=28.65  Aligned_cols=31  Identities=16%  Similarity=0.226  Sum_probs=23.0

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~   40 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQP   40 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEC
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceEC
Confidence            457889999999999874332 2357899883

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=94.36  E-value=0.036  Score=29.65  Aligned_cols=29  Identities=24%  Similarity=0.252  Sum_probs=21.1

Q ss_pred             ceecCCCcEEEEEEcCCCCC---CCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSP---DPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~   97 (98)
                      ..+++|+++.|+|.+.+..-   ...+.|+||
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ   41 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQ   41 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEE
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeC
Confidence            57888999999999764322   224679987

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.35  E-value=0.017  Score=29.03  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=20.7

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .|..++|.|.+.+.+|. ..+.|+++
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~n   39 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRA   39 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEEC
Confidence            46789999999988886 47999875

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.34  E-value=0.03  Score=29.00  Aligned_cols=29  Identities=17%  Similarity=0.265  Sum_probs=22.6

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|+.++|.|....+  ...+.|++|.
T Consensus        10 ~~~~~~G~~v~l~C~~~~~--~~~~~WYrQ~   38 (113)
T d1nfdb1          10 HIIKEKGGRSVLTCIPISG--HSNVVWYQQT   38 (113)
T ss_dssp             EEEEETTCCCEEEEECCTT--CCEEEEEEBC
T ss_pred             EEEEeCCCCEEEEEEeCCC--CCEEEEEEEC
Confidence            4567899999999986533  3579999984

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.34  E-value=0.025  Score=29.77  Aligned_cols=31  Identities=23%  Similarity=0.327  Sum_probs=23.0

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+.+|+++.|+|.+.+..- ...+.|+||.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~   40 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQT   40 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccC
Confidence            457889999999999864322 3458899883

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.33  E-value=0.034  Score=29.68  Aligned_cols=32  Identities=31%  Similarity=0.388  Sum_probs=23.2

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~   40 (124)
T d2b1hh1           8 GAEVKKSGESLKISCQTSGYSFSDYWIGWVRQM   40 (124)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCcCccceeC
Confidence            3457789999999999974322 2358999984

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.30  E-value=0.041  Score=29.17  Aligned_cols=30  Identities=27%  Similarity=0.370  Sum_probs=22.5

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      ...+++|+++.|+|.+.+..- .-.+.|+||
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ   39 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQ   39 (120)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTCEEEEEEE
T ss_pred             CceECCCCCeEEEEEECCccCcCCceEeeee
Confidence            357888999999999864322 346889987

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.26  E-value=0.025  Score=28.87  Aligned_cols=30  Identities=23%  Similarity=0.216  Sum_probs=22.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ....+.+|++++|.|....+  ...+.|++|.
T Consensus         8 ~~l~~~~G~~vtl~C~~s~~--~~~~~WYrQ~   37 (104)
T d1yqvl1           8 AIMSASPGEKVTMTCSASSS--VNYMYWYQQK   37 (104)
T ss_dssp             SEEEECTTCCEEEEEEESSC--CSCCEEEEEC
T ss_pred             CeEEECCCCCEEEEEEeCCC--CCccEEEEee
Confidence            34578899999999986432  3457999873

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.26  E-value=0.034  Score=29.44  Aligned_cols=29  Identities=21%  Similarity=0.314  Sum_probs=21.9

Q ss_pred             ceecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      ..+.+|+++.|+|.+.+..- .-.+.|+||
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ   39 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQ   39 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEE
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeee
Confidence            47888999999999764332 335899998

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.26  E-value=0.023  Score=30.00  Aligned_cols=30  Identities=20%  Similarity=0.248  Sum_probs=22.6

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      ...+++|+++.|+|.+.+..- .-.+.|+||
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (116)
T d1fn4b1           9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRH   39 (116)
T ss_dssp             CSBCCTTSEECCEEECCSSCTTSSEEEEEEE
T ss_pred             CceECCCCCeEEEEEEeCcccccCccceeeE
Confidence            356889999999999874332 335889987

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=94.25  E-value=0.016  Score=29.43  Aligned_cols=25  Identities=28%  Similarity=0.391  Sum_probs=20.5

Q ss_pred             CCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      .+..++|.|.+.+.+|.. .+.|+++
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~   40 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRG   40 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEEC
Confidence            345789999999889866 7999875

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=94.23  E-value=0.063  Score=27.06  Aligned_cols=24  Identities=17%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             eEEEEEccceeeccCeEEEEEEEEC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .....|.+++.. |+|.|.|.-...
T Consensus        56 ~a~F~l~~v~~~-~~G~Y~C~y~~~   79 (96)
T d1nkra1          56 KANFSISRMTQD-LAGTYRCYGSVT   79 (96)
T ss_dssp             EEEEEESSCCGG-GCEEEEEEEEBT
T ss_pred             EEEEEEcccCcc-cCeEEEEEEEcC
Confidence            467899999999 999999977653

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.22  E-value=0.034  Score=29.36  Aligned_cols=31  Identities=19%  Similarity=0.285  Sum_probs=23.2

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+... .-.+.|+||.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~   40 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQA   40 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeC
Confidence            457889999999999863222 3468999984

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.22  E-value=0.044  Score=29.24  Aligned_cols=32  Identities=28%  Similarity=0.298  Sum_probs=23.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~   40 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQR   40 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEccCCCCCCCCccccCC
Confidence            3457889999999999864332 2358999884

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.065  Score=26.85  Aligned_cols=36  Identities=14%  Similarity=0.343  Sum_probs=25.6

Q ss_pred             CCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        60 ~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +|.|...+...+..|++++|.|...  .+...+.|+|+
T Consensus         4 kPsLsa~P~~~V~~G~~VTL~C~~~--~~~~~f~L~Ke   39 (93)
T d1olla2           4 TPTLSVHPGPEVISGEKVTFYCRLD--TATSMFLLLKE   39 (93)
T ss_dssp             CCEEEEESCSEEETTCEEEEEEECS--SSCSEEEEEEE
T ss_pred             CCEEEEeCCCcccCCCcEEEEECCC--CCCCEEEEEEC
Confidence            4566434567899999999999964  45567777763

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.21  E-value=0.045  Score=29.30  Aligned_cols=32  Identities=22%  Similarity=0.276  Sum_probs=23.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~   40 (127)
T d1n0xh1           8 GAEVKKPGASVKVSCQASGYRFSNFVIHWVRQA   40 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEeC
Confidence            3467889999999999874322 2357999884

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=94.20  E-value=0.041  Score=29.47  Aligned_cols=30  Identities=17%  Similarity=0.161  Sum_probs=22.6

Q ss_pred             CceecCCCcEEEEEEcCCCCC--CCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSP--DPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~   97 (98)
                      ...+++|+++.|+|.+.+..-  ...+.|+||
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ   40 (127)
T d3cx5j1           9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRL   40 (127)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTTSSEEEEEEE
T ss_pred             CceECCCCCEEEEEEEecccccCCCcceeeeE
Confidence            357889999999999874332  236789998

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.027  Score=28.61  Aligned_cols=25  Identities=16%  Similarity=0.264  Sum_probs=19.8

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .+..++|.|.+.+..|. ..+.|+++
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~   43 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESN   43 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEEC
Confidence            45678999999877774 58999875

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=94.20  E-value=0.049  Score=28.76  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=23.1

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~   40 (118)
T d1lo4h1           9 GDLVKPGGSLTLSCEASGFTLRTYGMSWVRQT   40 (118)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTSEEEEEEEC
T ss_pred             CceECCCCCeEEEEEECCCcccCCCcccccCC
Confidence            357889999999999874322 3468899984

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=94.13  E-value=0.033  Score=30.02  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=23.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- ...+.|+||.
T Consensus         8 G~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~   40 (131)
T d3c2ah1           8 GGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQA   40 (131)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CCceECCCCCeEEEEEECCCCCcCCcccccccC
Confidence            3467889999999999864332 2368899884

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.10  E-value=0.044  Score=28.27  Aligned_cols=28  Identities=18%  Similarity=0.131  Sum_probs=21.7

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      ...+.+|++++|+|....+  ...+.|+||
T Consensus         9 ~~~~~~G~~v~l~C~~~~~--~~~~~WYrQ   36 (113)
T d1j8he1           9 YLVKRTGEKVFLECVQDMD--HENMFWYRQ   36 (113)
T ss_dssp             EEEEETTCCEEECEEESSC--CSEEEEEEE
T ss_pred             EEEECCCCCEEEEEEEcCC--ccEEEeEEe
Confidence            3567799999999986432  467899987

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.07  E-value=0.03  Score=30.01  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+.+|+++.|+|.+.+..- .-.+.|+||.
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~   40 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQA   40 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             CceECCCCCeEEEEEEcCCCCCCCceEeeeeC
Confidence            356788999999999864322 3458899883

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.06  E-value=0.035  Score=29.53  Aligned_cols=32  Identities=28%  Similarity=0.328  Sum_probs=23.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~   40 (122)
T d1q9rb1           8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQP   40 (122)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccCccccC
Confidence            3457889999999999864322 2358899984

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.03  E-value=0.045  Score=28.98  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=23.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~   40 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQA   40 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccccC
Confidence            3457789999999999874322 2358999984

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.03  E-value=0.044  Score=28.85  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=23.2

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~   40 (116)
T d1mjuh1           8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQR   40 (116)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CCcEECCCCCEEEEEEEccCccccCceEeeeeC
Confidence            3457889999999999864322 2357899883

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.02  E-value=0.052  Score=28.74  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=23.6

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+... .-.+.|+||.
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~   40 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQA   40 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceEC
Confidence            3467889999999999874332 2358899883

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.02  E-value=0.045  Score=29.06  Aligned_cols=31  Identities=19%  Similarity=0.230  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+... ..-+.|.||.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~   40 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQA   40 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEEC
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccCC
Confidence            357889999999999863322 3457899884

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.01  E-value=0.053  Score=28.07  Aligned_cols=29  Identities=17%  Similarity=0.221  Sum_probs=20.0

Q ss_pred             ceecCCCcEEEEEEcCCCCCCC--eEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDP--QISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~   97 (98)
                      ..+.+|+.++|.|+...+....  .+.|++|
T Consensus         9 ~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ   39 (117)
T d1dqta_           9 VLASSHGVASFPCEYSPSHNTDEVRVTVLRQ   39 (117)
T ss_dssp             EECCTTSCEEEEEEEESCCTTCEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEECccCCcccceeEEEEEe
Confidence            4566789999999854333222  3789987

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.026  Score=28.66  Aligned_cols=24  Identities=13%  Similarity=0.077  Sum_probs=20.4

Q ss_pred             eEEEEEccceeeccCeEEEEEEEEC
Q psy5866          15 RYDLIISNASFERDNGKFECRLKAA   39 (98)
Q Consensus        15 ~~~l~I~~v~~~~d~G~y~C~~~~~   39 (98)
                      .....|.+++.+ |+|.|.|.-...
T Consensus        59 ~a~F~l~~v~~~-~~G~Y~C~y~~~   82 (98)
T d1ugna2          59 RAIFSVGPVSPS-RRWWYRCYAYDS   82 (98)
T ss_dssp             EEEEEECCCCTT-SCEEEEEEEECT
T ss_pred             EEEEEeeecccC-CCeEEEEeeEcC
Confidence            456899999999 999999987653

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=93.99  E-value=0.023  Score=29.52  Aligned_cols=31  Identities=13%  Similarity=0.233  Sum_probs=21.7

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-----CCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-----DPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~   97 (98)
                      ....+.+|++++|.|.......     ...+.|++|
T Consensus         9 ~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq   44 (113)
T d1q9ra1           9 SSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQ   44 (113)
T ss_dssp             SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECCCcccCCCCCcceEEEec
Confidence            3467889999999997643211     234899987

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.94  E-value=0.073  Score=28.45  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~   40 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQA   40 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTSCEEEEEEC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCeEEEEeC
Confidence            356788999999999864332 3458999884

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=93.93  E-value=0.11  Score=26.15  Aligned_cols=36  Identities=22%  Similarity=0.429  Sum_probs=25.9

Q ss_pred             CCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        60 ~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +|.+...+...+..|++++|.|...  .+...+.|+|+
T Consensus         6 kPsLsa~P~~~V~~G~~VTL~C~~~--~~~~~f~L~k~   41 (99)
T d1nkra2           6 KPSLSAQPGPTVLAGENVTLSCSSR--SSYDMYHLSRE   41 (99)
T ss_dssp             CCEEEEESCSEECTTCEEEEEEEES--SCCSEEEEEET
T ss_pred             CCEEEEeCCCcccCCCeEEEEECCC--CCccEEEEEEC
Confidence            4566434567889999999999864  34567777764

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.036  Score=27.19  Aligned_cols=19  Identities=11%  Similarity=0.520  Sum_probs=13.9

Q ss_pred             EEEEccceeeccCeEEEEEEEE
Q psy5866          17 DLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        17 ~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ..+|..   .|++|+|.|.+..
T Consensus        51 ey~V~~---~D~SGeY~CVFl~   69 (80)
T d3b5ha2          51 EFKVDS---DDQWGEYSCVFLP   69 (80)
T ss_dssp             EEEECG---GGCCEEEEEEEES
T ss_pred             EEEEec---CCCCceEEEEEcC
Confidence            355654   4489999999876

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.016  Score=28.71  Aligned_cols=27  Identities=7%  Similarity=-0.026  Sum_probs=22.0

Q ss_pred             ceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .....|++++|.|..  ..|.+.+.|+++
T Consensus         5 v~~~~G~sVtl~c~~--~~p~~~v~W~~~   31 (93)
T d1ccza1           5 IYGVVYGNVTFHVPS--NVPLKEVLWKKQ   31 (93)
T ss_dssp             EEEETTCCEEECCCC--SSCCSCEEEEET
T ss_pred             EEEEECCCEEEEecC--CCCCcEEEEEEe
Confidence            467789999999975  457889999875

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.81  E-value=0.048  Score=29.31  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=23.1

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+..- ...+.|++|.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~   40 (130)
T d1rzga1           9 AEVKKPGSSVKVSCKASGGTFSNYAINWVRQA   40 (130)
T ss_dssp             CEEECTTCCEEEEEECCSSCGGGCCEEEEEEC
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceEccccC
Confidence            457888999999999864322 3468999884

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=93.79  E-value=0.054  Score=29.24  Aligned_cols=31  Identities=16%  Similarity=0.277  Sum_probs=23.1

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+.+|+++.|+|.+.+..- ...+.|+||.
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~   40 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQA   40 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEEC
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccC
Confidence            457889999999999874332 3458899884

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.78  E-value=0.076  Score=28.59  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=23.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         7 G~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~   39 (133)
T d1rzfh1           7 GAEVNKPGSSVKVSCQASGATLNSHAFSWVRQA   39 (133)
T ss_dssp             CCEEECTTCCEEEEEEESSSCSTTEEEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCCccceEC
Confidence            3457889999999999874332 2358899874

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.78  E-value=0.038  Score=29.34  Aligned_cols=32  Identities=16%  Similarity=0.221  Sum_probs=23.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCCC-CeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSPD-PQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+.... -.+.|+||.
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~   40 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQA   40 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceec
Confidence            34678899999999998743322 247899884

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.78  E-value=0.022  Score=29.42  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=22.5

Q ss_pred             CceecCCCcEEEEEEcCCCCCCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSPDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~   98 (98)
                      ...+.+|+.++|.|....+  ...+.|++|.
T Consensus         7 ~~~~~~G~svtL~C~~~~~--~~~~~WYrQ~   35 (112)
T d2cdeb1           7 YLVIGTGKKITLECSQTMG--HDKMYWYQQD   35 (112)
T ss_dssp             EEEEETTCCBCCEEEETTC--CSEEEEEEEC
T ss_pred             EEEECCCCCEEEEEEEeCC--cccEEEEEEc
Confidence            3577899999999996543  3679999983

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.097  Score=26.30  Aligned_cols=37  Identities=27%  Similarity=0.405  Sum_probs=25.5

Q ss_pred             CCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        60 ~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      +|.+...+...+..|++++|.|... ......+.|+++
T Consensus         5 kP~Lsa~P~~~V~~G~~VTL~C~~~-~~~~~~f~L~k~   41 (96)
T d1ucta2           5 KPFLSADRGLVLMPGENISLTCSSA-HIPFDRFSLAKE   41 (96)
T ss_dssp             CCEEEESSCSEECTTCCCEEEEECS-SSCCSEEEEEET
T ss_pred             CCEEEEeCCCccCCCCeEEEEEeCC-CCCceEEEEEEC
Confidence            4566444567899999999999853 223456777764

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.71  E-value=0.042  Score=27.88  Aligned_cols=24  Identities=17%  Similarity=0.255  Sum_probs=19.0

Q ss_pred             CCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          74 GRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      ...+.|.|.+.+.+| ...+.|+++
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~   42 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWN   42 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEEC
Confidence            456899999987777 457999875

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.71  E-value=0.042  Score=29.06  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=22.8

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~   40 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQA   40 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeec
Confidence            457889999999999864322 2257899884

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.71  E-value=0.041  Score=29.42  Aligned_cols=31  Identities=26%  Similarity=0.378  Sum_probs=22.9

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+..- ...+.|+||.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~   40 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQA   40 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeC
Confidence            457889999999999863222 2358899884

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.06  Score=27.35  Aligned_cols=30  Identities=7%  Similarity=0.087  Sum_probs=21.4

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEec
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQ   97 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~   97 (98)
                      .....+|++++|.|.-..... ...+.|++|
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~   35 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKE   35 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEe
Confidence            356789999999998543333 345789986

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.64  E-value=0.043  Score=29.17  Aligned_cols=30  Identities=20%  Similarity=0.287  Sum_probs=22.6

Q ss_pred             CceecCCCcEEEEEEcCCCCC--CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP--DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+. |..  .-.+.|+||.
T Consensus         9 ~~lvkPg~sl~LsC~~S-G~s~s~y~~~WvRQ~   40 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAAS-GFTFSNFGMHWVRQA   40 (122)
T ss_dssp             CEEECTTCCEEEEEEEE-SSCGGGSCEEEEEEC
T ss_pred             CceECCCCCeEEEEEEc-CCCCcCCceEccccC
Confidence            35678999999999986 433  2357999984

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.63  E-value=0.074  Score=28.37  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=23.3

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~   39 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQR   39 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTTEEEEEEEEC
T ss_pred             CCceECCCCCeEEEEEEccCCCCCCCCcceeeC
Confidence            3457888999999999874332 2357899884

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=93.61  E-value=0.039  Score=29.02  Aligned_cols=31  Identities=13%  Similarity=0.030  Sum_probs=22.0

Q ss_pred             CceecCCCcEEEEEEcCCCC-CCCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGS-PDPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~   98 (98)
                      .....+|++++|.|...... ....+.|++|.
T Consensus        10 sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~   41 (120)
T d1ypzf1          10 SISRPRDETAQISCKVFIESFRSVTIHWYRQK   41 (120)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEEC
T ss_pred             EEEecCCCcEEEEEEEecccccCCcccEEEeC
Confidence            34566899999999865332 23468999973

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.12  Score=26.29  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=22.7

Q ss_pred             EEEccceeeccCeEEEEEEEECCCCCe----eeEeeEEEEEECCC
Q psy5866          18 LIISNASFERDNGKFECRLKAAGSGQD----LHSQVYTVTVLTPP   58 (98)
Q Consensus        18 l~I~~v~~~~d~G~y~C~~~~~~~~~~----~~~~~~~l~v~~~~   58 (98)
                      |++. .+..|+...|+|+|.+...+..    .......|.|+.+|
T Consensus        66 l~~~-~~~~D~g~~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          66 VTFT-PVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             EEEC-CCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             EEcc-CChHHCCcEEEEEEEcCcCCccccccccceeEEeEEEeCC
Confidence            4444 4455144489999998643322    23444567776543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.50  E-value=0.06  Score=28.82  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=23.0

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~   40 (128)
T d2nxyd1           8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQA   40 (128)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGEEEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCcccceeC
Confidence            3457889999999999874322 2347899884

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.42  E-value=0.052  Score=29.03  Aligned_cols=31  Identities=29%  Similarity=0.318  Sum_probs=22.9

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+.+|+++.|+|.+.+... ...+.|+||.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~   40 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQA   40 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CceECCCCCeEEEEEECCCCccCCceeeeecC
Confidence            357788999999999874332 2358899884

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.098  Score=26.24  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=24.2

Q ss_pred             CCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        60 ~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|.|...+...+..|++++|.|...  .+...+.+++
T Consensus         4 kP~Lsa~Ps~~V~~G~~VTL~C~~~--~~~~~f~L~k   38 (96)
T d1ugna1           4 KPTLWAEPGSVITQGSPVTLRCQGG--QETQEYRLYR   38 (96)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECC--TTCCCEEEEE
T ss_pred             CCEEEeECCCccCCCCcEEEEEeCC--CCCCEEEEEE
Confidence            4566434557788999999999964  3445566655

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.36  E-value=0.068  Score=28.44  Aligned_cols=32  Identities=25%  Similarity=0.237  Sum_probs=23.2

Q ss_pred             CCceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+.+..- .-.+.|.||.
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~   40 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQS   40 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceEC
Confidence            3457789999999999874322 2358899884

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.32  E-value=0.042  Score=29.32  Aligned_cols=31  Identities=16%  Similarity=0.208  Sum_probs=23.0

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+..- ...+.|+||.
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~   40 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRV   40 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CceECCCCCeEEEEeECCccCcCcccCccccC
Confidence            357889999999999864332 3358999883

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=0.022  Score=29.42  Aligned_cols=29  Identities=14%  Similarity=0.193  Sum_probs=21.1

Q ss_pred             ceecCCCcEEEEEEcCCC-CCCCeEEEEec
Q psy5866          69 PVATEGRAIELVCSTSGG-SPDPQISVTLQ   97 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~   97 (98)
                      ..+.+|++++|+|..... .....+.|+||
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq   38 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQII   38 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEE
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEEC
Confidence            567789999999986421 22356889987

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=93.18  E-value=0.058  Score=27.30  Aligned_cols=25  Identities=12%  Similarity=0.267  Sum_probs=19.7

Q ss_pred             CCeEEEEEccceeeccCeEEEEEEEE
Q psy5866          13 SGRYDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        13 ~~~~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      ...+...|..+... |+|.|.|.-..
T Consensus        56 ~~~~~f~~~~~~~~-~~G~Y~C~y~~   80 (99)
T d1nkra2          56 NGTFQADFPLGPAT-HGGTYRCFGSF   80 (99)
T ss_dssp             TTEEEEEEEEEECC-SCEEEEEEEEE
T ss_pred             CccEEEEEeccccc-cCEEEEEEeec
Confidence            33456678889999 99999997665

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.13  E-value=0.063  Score=28.55  Aligned_cols=31  Identities=23%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             CceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          68 NPVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ...+++|+++.|+|.+.+..- .-.+.|+||.
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~   40 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQT   40 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecC
Confidence            457889999999999863221 2357899884

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.12  E-value=0.054  Score=27.44  Aligned_cols=24  Identities=13%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             CCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          74 GRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      ...+.|.|.+.+.+|. ..+.|+++
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~   43 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMN   43 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEEC
Confidence            4568999999988885 58999875

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=92.91  E-value=0.078  Score=27.43  Aligned_cols=31  Identities=19%  Similarity=0.218  Sum_probs=22.0

Q ss_pred             CCceecCCCcEEEEEEcCCCC----CCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGS----PDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~   97 (98)
                      ....+.+|+.++|+|......    ...-+.|++|
T Consensus         9 ~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   43 (112)
T d1ncwl1           9 KTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQ   43 (112)
T ss_dssp             SEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEECcccccCCCCcccEEEEc
Confidence            346788999999999854221    2245889987

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.059  Score=27.50  Aligned_cols=25  Identities=12%  Similarity=0.122  Sum_probs=19.7

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .++.++|.|.+.+..|. ..+.|+++
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~   43 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHN   43 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEEC
Confidence            45578999999877874 68999864

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.84  E-value=0.061  Score=28.52  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=21.9

Q ss_pred             ceecCCCcEEEEEEcCCCCC-CCeEEEEecC
Q psy5866          69 PVATEGRAIELVCSTSGGSP-DPQISVTLQV   98 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~   98 (98)
                      ..+.+|+++.|+|.+.+..- .-.+.|+||.
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~   40 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQA   40 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeC
Confidence            46788999999999863222 2357899884

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=92.78  E-value=0.056  Score=27.68  Aligned_cols=28  Identities=18%  Similarity=0.101  Sum_probs=21.8

Q ss_pred             eecCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          70 VATEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      ....+..+.|.|.+.+..|.. .+.|+++
T Consensus        20 e~~~~~~~~l~Clv~~f~P~~i~v~W~~~   48 (107)
T d1hxmb2          20 ETKLQKAGTYLCLLEKFFPDVIKIHWEEK   48 (107)
T ss_dssp             GGGSSSCEEEEEEEEEESSCCEEEEEEES
T ss_pred             HHccCCcEEEEEEEeEEeCCceEEEEEEC
Confidence            445567799999999888854 6999874

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.71  E-value=0.061  Score=26.82  Aligned_cols=24  Identities=13%  Similarity=0.123  Sum_probs=19.3

Q ss_pred             CCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          74 GRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      +..+.|.|.+.+.+|. ..++|+++
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~n   39 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRN   39 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEEC
Confidence            4568999999988885 47999875

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=92.51  E-value=0.026  Score=28.61  Aligned_cols=25  Identities=24%  Similarity=0.206  Sum_probs=17.2

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .++..+|.|.+.+.+|. ..+.|+++
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~   42 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRN   42 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEET
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEEC
Confidence            34556899999887775 48999874

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=0.046  Score=27.48  Aligned_cols=24  Identities=13%  Similarity=0.155  Sum_probs=19.3

Q ss_pred             CCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          74 GRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      +...+|.|.+.+.+|.. .+.|+++
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~d   39 (94)
T d1de4a1          15 SSVTTLRCRALNYYPQNITMKWLKD   39 (94)
T ss_dssp             SSCEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCCEEEEEEEeeEECCCCEEEEEEC
Confidence            45689999999878854 8999875

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.28  E-value=0.14  Score=26.05  Aligned_cols=27  Identities=7%  Similarity=-0.090  Sum_probs=20.4

Q ss_pred             eecCCCcEEEEEEcCCCCCCCeEEEEec
Q psy5866          70 VATEGRAIELVCSTSGGSPDPQISVTLQ   97 (98)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~   97 (98)
                      .+.+|+++.|.|.... .....+.|++.
T Consensus        10 ~v~~G~~V~L~c~~~p-~~~~~~~W~k~   36 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLP-LALGAFAWYKG   36 (107)
T ss_dssp             SCCTTCCEEEEEESCC-TTCSEEEEEES
T ss_pred             cccCCCCEEEEecCCC-CCceEEEEEeC
Confidence            4669999999998543 33568999874

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=92.28  E-value=0.03  Score=28.36  Aligned_cols=25  Identities=20%  Similarity=0.143  Sum_probs=17.4

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .++...|.|.+.+.+|. ..+.|+++
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~n   40 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRN   40 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEEC
Confidence            34556899999988884 68999875

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.067  Score=27.09  Aligned_cols=25  Identities=16%  Similarity=0.284  Sum_probs=19.7

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .+..+.|.|.+.+.+|. ..+.|+++
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~   44 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVD   44 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEEC
Confidence            35568999999888875 57999874

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.049  Score=27.62  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=19.4

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .+..+.|.|.+.+..|. ..+.|+++
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~   44 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKAD   44 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEEC
Confidence            35668999999877774 47999865

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.67  E-value=0.071  Score=27.60  Aligned_cols=30  Identities=13%  Similarity=0.058  Sum_probs=21.9

Q ss_pred             ceecCCCcEEEEEEcCCC-CCCCeEEEEecC
Q psy5866          69 PVATEGRAIELVCSTSGG-SPDPQISVTLQV   98 (98)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~   98 (98)
                      ..+.+|++++|+|..... .....+.|.+|.
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~   35 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLP   35 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECC
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEEC
Confidence            567899999999996521 134568899873

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=91.64  E-value=0.25  Score=24.71  Aligned_cols=35  Identities=11%  Similarity=0.206  Sum_probs=23.9

Q ss_pred             CCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        60 ~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|.|...+...+..|.+++|.|...  .....+.+++
T Consensus         2 KPsLsa~P~~~V~~G~~VTl~C~~~--~~~~~f~L~k   36 (96)
T d1nkra1           2 KPSLLAHPGPLVKSEETVILQCWSD--VMFEHFLLHR   36 (96)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEEES--SCCSEEEEEE
T ss_pred             CCEEEeeCCCccCCCCcEEEEECCC--CCCCEEEEEE
Confidence            4566434567888999999999964  3445566655

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.53  E-value=0.11  Score=26.50  Aligned_cols=31  Identities=23%  Similarity=0.249  Sum_probs=21.6

Q ss_pred             CCceecCCCcEEEEEEcCCC---CCCCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGG---SPDPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~---~p~~~~~W~~~   97 (98)
                      ....+..|++++|.|.....   .....+.|+++
T Consensus         7 ~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~   40 (119)
T d1neua_           7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQ   40 (119)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCCSCCEEEEEEE
T ss_pred             CeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEe
Confidence            44678889999999974322   23347899864

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.14  Score=26.03  Aligned_cols=25  Identities=16%  Similarity=0.255  Sum_probs=19.4

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      ....+.|.|.+.+..|. ..++|.++
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~   45 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKYK   45 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCCceEEEEEEecccCCcEEEEEEEC
Confidence            34668999999988885 57999864

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=91.19  E-value=0.13  Score=25.94  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=20.0

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .+..+.|.|.+.+.+|. ..+.|+++
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~   43 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNN   43 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEEC
Confidence            46678999999877774 58999875

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.13  E-value=0.049  Score=28.71  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=22.8

Q ss_pred             CCceecCCCcEEEEEEcCCCCC--CCeEEEEecC
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP--DPQISVTLQV   98 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~   98 (98)
                      ....+++|+++.|+|.+. |..  .-.+.|+||.
T Consensus         8 G~~~vkpg~sl~LsC~~S-G~s~~~y~~~WvRQ~   40 (117)
T d1b2wh1           8 GGGVVQPGRSLKLSCLAS-GYIFTSSWINWVKQR   40 (117)
T ss_dssp             CCCEECTTSCEEEEEECC-HHHHTTSEECEEEEC
T ss_pred             CCceECCCCCEEEEEEEC-CCCCcCCccccccCC
Confidence            345789999999999986 322  3357899874

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=91.12  E-value=0.077  Score=27.12  Aligned_cols=27  Identities=22%  Similarity=0.198  Sum_probs=21.3

Q ss_pred             ecCCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      ...|...+|.|.+.+.+|. ..+.|+++
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~n   42 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDH   42 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEET
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEEC
Confidence            3457778999999988885 57999875

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=90.80  E-value=0.086  Score=26.63  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=18.8

Q ss_pred             CcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          75 RAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        75 ~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      ..++|.|.+.+.+|.. .+.|+++
T Consensus        15 ~~vtL~C~~~gFyP~~I~v~W~~n   38 (98)
T d1u58a1          15 GGMRLRCFARDYYPADLEIRWWKD   38 (98)
T ss_dssp             SCEEEEEEEEEEBSSCEEEEEEEE
T ss_pred             CcEEEEEEEEEEcCCCCEEEEEEC
Confidence            4589999999888854 7999875

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=0.36  Score=24.09  Aligned_cols=35  Identities=20%  Similarity=0.386  Sum_probs=23.3

Q ss_pred             CCEEeCCCCceecCCCcEEEEEEcCCCCCCCeEEEEe
Q psy5866          60 PPKISPGANPVATEGRAIELVCSTSGGSPDPQISVTL   96 (98)
Q Consensus        60 ~p~i~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~   96 (98)
                      +|.|...+...+..|++++|.|...  .....+.++|
T Consensus         4 kPsLsa~P~~~v~~G~~VTL~C~~~--~~~~~f~L~k   38 (98)
T d1ugna2           4 KPTLSAQPSPVVNSGGNVTLQCDSQ--VAFDGFILCK   38 (98)
T ss_dssp             CCEEEEESCSEEETTCCEEEEEECS--SCCSEEEEEE
T ss_pred             CCEEEeeCCCccCCCCcEEEEeCCC--CCCCEEEEEE
Confidence            4566433556789999999999964  3344555544

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.72  E-value=0.067  Score=27.39  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=21.4

Q ss_pred             CCceecCCCcEEEEEEcCCCCC--CCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSGGSP--DPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~   97 (98)
                      ....+.+|++++|.|.-..+..  ...+.|+++
T Consensus         7 ~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~   39 (116)
T d1xeda_           7 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQ   39 (116)
T ss_dssp             SEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC
T ss_pred             CEEEEcCCCCEEEEEEECCCCCccceeEEEEEc
Confidence            4567889999999998532221  234789876

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.45  E-value=0.096  Score=26.17  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=19.2

Q ss_pred             CCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          74 GRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      +..++|.|.+.+.+|. ..++|+++
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~   39 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRD   39 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEEC
Confidence            4568999999988885 47899874

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=89.63  E-value=0.074  Score=27.41  Aligned_cols=25  Identities=16%  Similarity=0.314  Sum_probs=19.1

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .+..++|.|.+.+..|. ..+.|.++
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~   51 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSS   51 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSC
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeC
Confidence            35568899999988884 57999653

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.44  E-value=0.11  Score=26.19  Aligned_cols=24  Identities=8%  Similarity=0.119  Sum_probs=17.1

Q ss_pred             CCCcEEEEEEcCCCCCCC--eEEEEe
Q psy5866          73 EGRAIELVCSTSGGSPDP--QISVTL   96 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~~--~~~W~~   96 (98)
                      .+..+.|.|.+.+.+|..  .+.|.+
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~   43 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGK   43 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEcc
Confidence            457799999998766653  456754

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=89.23  E-value=0.15  Score=25.35  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=19.2

Q ss_pred             CCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          74 GRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      +..+.|.|.+.+.+|.. .+.|+++
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~   39 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQD   39 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeEC
Confidence            45689999999888854 7999875

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.12  E-value=0.12  Score=26.09  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=17.2

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEe
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTL   96 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~   96 (98)
                      .++.+.|.|.+.+.+|. ..+.|.+
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~   43 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNS   43 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECc
Confidence            46779999999987875 4799954

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.90  E-value=0.17  Score=25.49  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=19.5

Q ss_pred             cCCCcEEEEEEcCCCCCC-CeEEEEe
Q psy5866          72 TEGRAIELVCSTSGGSPD-PQISVTL   96 (98)
Q Consensus        72 ~~g~~~~l~C~~~~~~p~-~~~~W~~   96 (98)
                      ..+..++|.|.+.+.+|. ..+.|.+
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~   43 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNE   43 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEec
Confidence            356789999999877774 5799964

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.74  E-value=0.46  Score=24.17  Aligned_cols=31  Identities=16%  Similarity=0.089  Sum_probs=20.8

Q ss_pred             CCceecCCCcEEEEEEcCC---CCC---CCeEEEEec
Q psy5866          67 ANPVATEGRAIELVCSTSG---GSP---DPQISVTLQ   97 (98)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~~---~~p---~~~~~W~~~   97 (98)
                      .+.++.+|..+.|.|....   +..   ...+.|+++
T Consensus         9 ~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~   45 (121)
T d2g5ra1           9 SSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRA   45 (121)
T ss_dssp             SEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEEC
T ss_pred             CEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEe
Confidence            4568889999999998531   111   234678875

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.72  E-value=0.25  Score=25.04  Aligned_cols=25  Identities=12%  Similarity=0.223  Sum_probs=19.7

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .+..++|.|.+.+..|. ..+.|+++
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~n   44 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKID   44 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEEC
Confidence            35668999999887875 58999864

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=87.63  E-value=0.084  Score=26.81  Aligned_cols=25  Identities=16%  Similarity=0.250  Sum_probs=19.5

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      .+..+.|.|.+.+..|. ..+.|.++
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~   44 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKAN   44 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEET
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEEC
Confidence            35568899999877775 48999875

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.60  E-value=0.13  Score=25.95  Aligned_cols=25  Identities=16%  Similarity=0.211  Sum_probs=18.3

Q ss_pred             CCCcEEEEEEcCCCCCC---CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD---PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~---~~~~W~~~   97 (98)
                      .+...+|+|.+.+..|.   ..+.|.++
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~   42 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFID   42 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEES
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEEC
Confidence            45567899999765664   47889864

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.32  E-value=0.31  Score=24.64  Aligned_cols=24  Identities=13%  Similarity=0.272  Sum_probs=19.3

Q ss_pred             CCcEEEEEEcCCCCCC-CeEEEEec
Q psy5866          74 GRAIELVCSTSGGSPD-PQISVTLQ   97 (98)
Q Consensus        74 g~~~~l~C~~~~~~p~-~~~~W~~~   97 (98)
                      ...+.|.|.+.+..|. ..+.|+++
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~n   44 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVD   44 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEEC
Confidence            4578999999887775 47999874

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=84.28  E-value=0.13  Score=26.97  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             cCCCcEEEEEEcCCCCCCC-eEEEEec
Q psy5866          72 TEGRAIELVCSTSGGSPDP-QISVTLQ   97 (98)
Q Consensus        72 ~~g~~~~l~C~~~~~~p~~-~~~W~~~   97 (98)
                      ..+..++|.|.+.+..|.. .+.|+++
T Consensus        18 ~~~~~~tL~C~v~gf~P~~i~v~W~~~   44 (127)
T d1ogae2          18 SHTQKATLVCLATGFYPDHVELSWWVN   44 (127)
T ss_dssp             HHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             ccCCcEEEEEEEEeccCCCeEEEEEEC
Confidence            3456689999998878744 7999864

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=83.81  E-value=0.12  Score=26.85  Aligned_cols=27  Identities=22%  Similarity=0.111  Sum_probs=19.8

Q ss_pred             ecCCCcEEEEEEcCCCCCC---CeEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSPD---PQISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p~---~~~~W~~~   97 (98)
                      ...+..+.|.|.+.+..|.   ..+.|+++
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~   58 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVN   58 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEET
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeC
Confidence            3456778999999766663   57889864

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=83.80  E-value=0.29  Score=24.90  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=18.2

Q ss_pred             EEEEEccceeeccCeEEEEEEEE
Q psy5866          16 YDLIISNASFERDNGKFECRLKA   38 (98)
Q Consensus        16 ~~l~I~~v~~~~d~G~y~C~~~~   38 (98)
                      .+|.|..+.++ |++.|.|....
T Consensus        74 ~~l~l~~~~~~-dsa~Y~Ca~~~   95 (112)
T d1fo0b_          74 TELRLQVANMS-QGRTLYCTCSA   95 (112)
T ss_dssp             TEEEEEEESCC-SCEEEEEEEES
T ss_pred             cEEEEecCCcc-CCccEEEEEec
Confidence            35888888899 99999998654

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.58  E-value=0.37  Score=24.15  Aligned_cols=25  Identities=8%  Similarity=0.178  Sum_probs=17.5

Q ss_pred             CCCcEEEEEEcCCCCCC---CeEEEEec
Q psy5866          73 EGRAIELVCSTSGGSPD---PQISVTLQ   97 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~---~~~~W~~~   97 (98)
                      .+..++|.|.+.+..|.   ..+.|+++
T Consensus        15 ~~~~~tL~C~v~gf~P~~~~v~~~W~~~   42 (103)
T d1fp5a1          15 IRKSPTITCLVVDLAPSKGTVNLTWSRA   42 (103)
T ss_dssp             TTCCCEEEEEEEESSCCSSCCEEEEEET
T ss_pred             hCCCeEEEEEEEeeECCCceEEEEEcCC
Confidence            45667999999876775   35677654

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.41  E-value=0.33  Score=24.33  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=18.7

Q ss_pred             CCCcEEEEEEcCCCCCC-CeEEEEe
Q psy5866          73 EGRAIELVCSTSGGSPD-PQISVTL   96 (98)
Q Consensus        73 ~g~~~~l~C~~~~~~p~-~~~~W~~   96 (98)
                      .+..+.|.|.+.+..|. ..+.|.+
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~   43 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNS   43 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECc
Confidence            35678999999988875 4799954

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.54  E-value=0.16  Score=25.63  Aligned_cols=27  Identities=15%  Similarity=0.174  Sum_probs=19.4

Q ss_pred             ecCCCcEEEEEEcCCCCCC---CeEEEEec
Q psy5866          71 ATEGRAIELVCSTSGGSPD---PQISVTLQ   97 (98)
Q Consensus        71 ~~~g~~~~l~C~~~~~~p~---~~~~W~~~   97 (98)
                      ...+..+.|.|.+.+..|.   ..+.|.++
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~   44 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVD   44 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEET
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeC
Confidence            3456778999999876674   46778764