Psyllid ID: psy5884

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCAIMNKEENS
cEEEEccccccccccccEEEEEEEEEEccccccEEcEEEEEEEEccccccccccccccEEEcccccccEEEEEEccccccccccEEEEEEEEccccccccEEEcccccEEEEcccccccccEEEEEEEEEccccccccEEEEEEEccccccccEEEEEEEEEEcccccccccEEEEEEEEEcccccccccccccc
cEEEEcccccHHHccccEEEEEEEEEcccccccccEEEEEEEEEEcccccccEcEEEEEEEcccccccEEEEEEEEEccccccEEEEEEEEccccccccEEEEEccccEEEEEccccccccEEEEEEEEccccccccEEEEEEEEEEccccccccccccEEEEcccccccccEEEEEEEEccccccccccccccc
ylvvskenldrdppnpgkfrFQVIAREkqgtaasvpVSLTVnlndindnaprlpmippiqiqaGEARRQIVKIEatdndlgvnaEITYSIYHVSntglhkfridprsgviettgkliageqySITVqatdtggkssQTIVEVSvvpgpntrspvfqqntydvnvsegasinsTVATITVSRLASGCAIMNKEENS
ylvvskenldrdppnpgKFRFQVIAREKqgtaasvpvSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKIEatdndlgvnAEITYSIYHvsntglhkfridprsGVIETTGKLIAGEQYSITVQAtdtggkssQTIVEVSVvpgpntrspvfQQNTYDVNVSEGASINSTVATITVSRLASGCAIMNKEENS
YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCAIMNKEENS
********************FQVIA******AASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQAT*********IVEVSVV********VFQQNTYDVNVSEGASINSTVATITVSRLASGCAI*******
YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCAIMNK****
YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCAIMNKEENS
YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLAS***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQYSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCAIMNKEENS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query195 2.2.26 [Sep-21-2011]
O88277 4351 Protocadherin Fat 2 OS=Ra yes N/A 0.835 0.037 0.306 7e-12
Q14517 4588 Protocadherin Fat 1 OS=Ho yes N/A 0.887 0.037 0.322 8e-12
Q8TDW7 4589 Protocadherin Fat 3 OS=Ho no N/A 0.892 0.037 0.309 3e-11
Q24292 3503 Protein dachsous OS=Droso no N/A 0.805 0.044 0.340 4e-11
Q5F226 4351 Protocadherin Fat 2 OS=Mu no N/A 0.841 0.037 0.291 4e-11
Q9R0M0 2920 Cadherin EGF LAG seven-pa no N/A 0.882 0.058 0.307 4e-11
Q8BNA6 4555 Protocadherin Fat 3 OS=Mu no N/A 0.892 0.038 0.304 7e-11
Q5DRF0 948 Protocadherin alpha-2 OS= no N/A 0.764 0.157 0.361 8e-11
Q9NYQ8 4349 Protocadherin Fat 2 OS=Ho no N/A 0.841 0.037 0.270 8e-11
Q9Y5H9 948 Protocadherin alpha-2 OS= no N/A 0.764 0.157 0.361 1e-10
>sp|O88277|FAT2_RAT Protocadherin Fat 2 OS=Rattus norvegicus GN=Fat2 PE=1 SV=1 Back     alignment and function desciption
 Score = 70.5 bits (171), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 100/186 (53%), Gaps = 23/186 (12%)

Query: 1    YLVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQ 60
            + + S++ LDR+  +  K+  +V A + +   ASVPV + V   DINDN+P+   +    
Sbjct: 2966 WRISSRKTLDRE--HIAKYLLRVTASDGK-FQASVPVEVFVV--DINDNSPQCSQL---- 3016

Query: 61   IQAGEARRQ------IVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTG 114
            +  G+ R        I+K+ A D D+  NA+ITYS++     G  +F++DP +G + TT 
Sbjct: 3017 LYTGKVREDVTPGHFILKVSAIDVDMDTNAQITYSLH---GPGAQEFKLDPHTGEL-TTL 3072

Query: 115  KLIAGEQ---YSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASIN 171
             ++  E+   Y++  +ATD GG+S Q  V +  +   N  +P F  +  DV V +  ++ 
Sbjct: 3073 TVLDRERKDVYNLVAKATDGGGQSCQAEVTLH-IEDVNDNAPRFFPSHCDVAVFDNTTVK 3131

Query: 172  STVATI 177
            + VA +
Sbjct: 3132 TPVAVV 3137
May modulate the extracellular space surronding parallel fibers of cerebellar during development. Plays a role in the migration of epidermal cells.
Rattus norvegicus (taxid: 10116)
>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2 Back     alignment and function description
>sp|Q8TDW7|FAT3_HUMAN Protocadherin Fat 3 OS=Homo sapiens GN=FAT3 PE=2 SV=2 Back     alignment and function description
>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3 Back     alignment and function description
>sp|Q5F226|FAT2_MOUSE Protocadherin Fat 2 OS=Mus musculus GN=Fat2 PE=2 SV=1 Back     alignment and function description
>sp|Q9R0M0|CELR2_MOUSE Cadherin EGF LAG seven-pass G-type receptor 2 OS=Mus musculus GN=Celsr2 PE=1 SV=2 Back     alignment and function description
>sp|Q8BNA6|FAT3_MOUSE Protocadherin Fat 3 OS=Mus musculus GN=Fat3 PE=1 SV=2 Back     alignment and function description
>sp|Q5DRF0|PCDA2_PANTR Protocadherin alpha-2 OS=Pan troglodytes GN=PCDHA2 PE=3 SV=1 Back     alignment and function description
>sp|Q9NYQ8|FAT2_HUMAN Protocadherin Fat 2 OS=Homo sapiens GN=FAT2 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y5H9|PCDA2_HUMAN Protocadherin alpha-2 OS=Homo sapiens GN=PCDHA2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
307191989 1694 Protocadherin-15 [Harpegnathos saltator] 0.841 0.096 0.774 2e-75
345486640 1618 PREDICTED: LOW QUALITY PROTEIN: protocad 0.856 0.103 0.761 9e-75
328783691 1974 PREDICTED: protocadherin-15 [Apis mellif 0.841 0.083 0.768 2e-74
307175878 1377 Protocadherin-15 [Camponotus floridanus] 0.861 0.122 0.757 5e-74
380016357 1841 PREDICTED: protocadherin-15-like [Apis f 0.841 0.089 0.762 6e-74
383865554 1434 PREDICTED: cadherin-87A-like, partial [M 0.861 0.117 0.757 2e-73
242023771 1512 protocadherin-15 precursor, putative [Pe 0.907 0.117 0.748 2e-73
340725229 1961 PREDICTED: protocadherin Fat 3-like [Bom 0.841 0.083 0.751 6e-73
350403960 1968 PREDICTED: protocadherin Fat 3-like [Bom 0.841 0.083 0.751 8e-73
91091750 1516 PREDICTED: similar to cadherin [Triboliu 0.866 0.111 0.674 3e-67
>gi|307191989|gb|EFN75379.1| Protocadherin-15 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/177 (77%), Positives = 156/177 (88%)

Query: 2   LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQI 61
           LVV++ENLDRDPP+PG+FRFQV+AREK G AAS P+S  V LND+NDNAP+LPM+PPI +
Sbjct: 222 LVVNEENLDRDPPSPGRFRFQVVAREKTGVAASSPLSFVVTLNDVNDNAPQLPMMPPITV 281

Query: 62  QAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAGEQ 121
           QAGE +RQ+ K+EATDND G NAEITYSIYHVSN GL KF+IDP++GVIET  KL AGEQ
Sbjct: 282 QAGETKRQVTKVEATDNDEGENAEITYSIYHVSNNGLQKFKIDPKTGVIETMRKLNAGEQ 341

Query: 122 YSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATIT 178
           YSITVQATD GGK SQTIVEV+V+PGPNTRSPVFQQ  Y+V VSEGASINSTVATIT
Sbjct: 342 YSITVQATDKGGKYSQTIVEVNVIPGPNTRSPVFQQPVYEVQVSEGASINSTVATIT 398

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345486640|ref|XP_003425515.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin-15-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328783691|ref|XP_396248.4| PREDICTED: protocadherin-15 [Apis mellifera] Back     alignment and taxonomy information
>gi|307175878|gb|EFN65693.1| Protocadherin-15 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380016357|ref|XP_003692153.1| PREDICTED: protocadherin-15-like [Apis florea] Back     alignment and taxonomy information
>gi|383865554|ref|XP_003708238.1| PREDICTED: cadherin-87A-like, partial [Megachile rotundata] Back     alignment and taxonomy information
>gi|242023771|ref|XP_002432304.1| protocadherin-15 precursor, putative [Pediculus humanus corporis] gi|212517727|gb|EEB19566.1| protocadherin-15 precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340725229|ref|XP_003400975.1| PREDICTED: protocadherin Fat 3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350403960|ref|XP_003486964.1| PREDICTED: protocadherin Fat 3-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|91091750|ref|XP_968422.1| PREDICTED: similar to cadherin [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
FB|FBgn0039709 1706 Cad99C "Cadherin 99C" [Drosoph 0.902 0.103 0.634 9e-55
WB|WBGene00000397 1544 cdh-5 [Caenorhabditis elegans 0.984 0.124 0.354 2.4e-22
UNIPROTKB|Q9Y5H9 948 PCDHA2 "Protocadherin alpha-2" 0.928 0.190 0.331 9.6e-15
RGD|735182 948 Pcdha2 "protocadherin alpha 2" 0.933 0.191 0.319 2e-14
UNIPROTKB|Q9Y5I1 949 PCDHA11 "Protocadherin alpha-1 0.923 0.189 0.306 6.9e-14
ZFIN|ZDB-GENE-030131-4218 1088 pcdh19 "protocadherin 19" [Dan 0.928 0.166 0.331 1.1e-13
ZFIN|ZDB-GENE-050610-19 957 pcdh2g28 "protocadherin 2 gamm 0.912 0.185 0.306 1.5e-13
UNIPROTKB|E1BVK1 1020 LOC422264 "Uncharacterized pro 0.841 0.160 0.339 2e-13
UNIPROTKB|F1PJH2 4589 FAT3 "Uncharacterized protein" 0.892 0.037 0.320 2.6e-13
FB|FBgn0000497 3503 ds "dachsous" [Drosophila mela 0.876 0.048 0.323 3.2e-13
FB|FBgn0039709 Cad99C "Cadherin 99C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 579 (208.9 bits), Expect = 9.0e-55, P = 9.0e-55
 Identities = 113/178 (63%), Positives = 138/178 (77%)

Query:     2 LVVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIPPIQI 61
             LVV++ENLDRDPP PG+F+FQV+ARE +  AAS P+SLTV+L D+NDNAP+L M+ PI I
Sbjct:   449 LVVNEENLDRDPPAPGRFKFQVVAREPRTNAASAPLSLTVHLRDVNDNAPKLAMVAPISI 508

Query:    62 QAGEAR--RQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAG 119
              AG+    R + ++ ATDND G NA +TYSIYHVSN G+ KF I+  +G I T G+L+AG
Sbjct:   509 TAGDQSESRLVTQVTATDNDEGPNAVVTYSIYHVSNNGIQKFTINATTGEIRTQGRLLAG 568

Query:   120 EQYSITVQATDTGGKSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVSEGASINSTVATI 177
             EQYSITVQATD GG SSQ IVEVSV PGPNT+ P FQ+  Y+V VSEGA INSTV  +
Sbjct:   569 EQYSITVQATDIGGLSSQAIVEVSVTPGPNTKPPRFQKPIYEVQVSEGAEINSTVTVV 626
GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS
GO:0005887 "integral to plasma membrane" evidence=ISS
GO:0007156 "homophilic cell adhesion" evidence=IEA
GO:0048100 "wing disc anterior/posterior pattern formation" evidence=IMP
GO:0016021 "integral to membrane" evidence=ISS
GO:0005509 "calcium ion binding" evidence=ISS
GO:0007155 "cell adhesion" evidence=ISS
GO:0007224 "smoothened signaling pathway" evidence=IMP
GO:0007304 "chorion-containing eggshell formation" evidence=IMP
GO:0005902 "microvillus" evidence=IDA
GO:0032529 "follicle cell microvillus organization" evidence=IMP
GO:0032533 "regulation of follicle cell microvillus length" evidence=IMP
GO:0016324 "apical plasma membrane" evidence=IDA
GO:0007305 "vitelline membrane formation involved in chorion-containing eggshell formation" evidence=IMP
WB|WBGene00000397 cdh-5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5H9 PCDHA2 "Protocadherin alpha-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|735182 Pcdha2 "protocadherin alpha 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5I1 PCDHA11 "Protocadherin alpha-11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4218 pcdh19 "protocadherin 19" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050610-19 pcdh2g28 "protocadherin 2 gamma 28" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BVK1 LOC422264 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJH2 FAT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0000497 ds "dachsous" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
cd1130498 cd11304, Cadherin_repeat, Cadherin tandem repeat d 7e-16
smart0011281 smart00112, CA, Cadherin repeats 5e-13
pfam0002892 pfam00028, Cadherin, Cadherin domain 8e-10
smart0011281 smart00112, CA, Cadherin repeats 4e-05
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain Back     alignment and domain information 
 Score = 69.3 bits (170), Expect = 7e-16
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 70  IVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLI--AGEQYSITVQ 127
           ++ + ATD D G N E+TYSI  VS      F IDP +G I T   L       Y++TV 
Sbjct: 16  VLTVSATDPDSGENGEVTYSI--VSGNEDGLFSIDPSTGEITTAKPLDREEQSSYTLTVT 73

Query: 128 ATDTGG--KSSQTIVEVSVV 145
           ATD GG   SS   V ++V+
Sbjct: 74  ATDGGGPPLSSTATVTITVL 93

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98
>gnl|CDD|214520 smart00112, CA, Cadherin repeats Back     alignment and domain information
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain Back     alignment and domain information
>gnl|CDD|214520 smart00112, CA, Cadherin repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 195
KOG4289|consensus 2531 100.0
KOG4289|consensus 2531 100.0
KOG1219|consensus 4289 99.97
KOG1219|consensus 4289 99.97
cd00031199 CA Cadherin repeat domain; Cadherins are glycoprot 99.93
cd00031199 CA Cadherin repeat domain; Cadherins are glycoprot 99.9
PF0002893 Cadherin: Cadherin domain; InterPro: IPR002126 Cad 99.73
KOG1834|consensus 952 99.7
smart0011279 CA Cadherin repeats. Cadherins are glycoproteins i 99.63
smart0011279 CA Cadherin repeats. Cadherins are glycoproteins i 99.24
KOG1834|consensus 952 99.23
PF0002893 Cadherin: Cadherin domain; InterPro: IPR002126 Cad 98.31
PF0875890 Cadherin_pro: Cadherin prodomain like; InterPro: I 97.22
smart0073697 CADG Dystroglycan-type cadherin-like domains. Cadh 97.1
PF0826684 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad 97.03
PF13750158 Big_3_3: Bacterial Ig-like domain (group 3) 97.03
TIGR0196599 VCBS_repeat VCBS repeat. This domain of about 100 94.17
PF0534549 He_PIG: Putative Ig domain; InterPro: IPR008009 Th 90.19
TIGR03660137 T1SS_rpt_143 T1SS-143 repeat domain. This model re 88.72
smart0073697 CADG Dystroglycan-type cadherin-like domains. Cadh 88.34
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 80.23
>KOG4289|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.7e-35  Score=258.84  Aligned_cols=186  Identities=27%  Similarity=0.419  Sum_probs=172.5

Q ss_pred             EecCCCCCCCCCCCCeEEEEEEEEECCCCCeEeeEEEEEEEEecCCCCCccCCCC-cEEEEcCCC-CceEEEEEEeeCCC
Q psy5884           3 VVSKENLDRDPPNPGKFRFQVIAREKQGTAASVPVSLTVNLNDINDNAPRLPMIP-PIQIQAGEA-RRQIVKIEATDNDL   80 (195)
Q Consensus         3 i~~~~~LD~E~~~~~~~~l~v~a~D~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~-~~~v~e~~~-g~~v~~v~a~D~D~   80 (195)
                      |.+++.||||.  ...+.|.|.|.|.+.|.++++++|+|.|+|.|||.|+|++.. ...+.|+.. |..|.+|.|+|.|.
T Consensus       221 irta~~lDREt--~e~HvlrVtA~d~~~P~~SAtttv~V~V~D~nDhsPvFEq~~Y~e~lREn~evGy~vLtvrAtD~Ds  298 (2531)
T KOG4289|consen  221 IRTAKSLDRET--KETHVLRVTAQDHGDPRRSATTTVTVLVLDTNDHSPVFEQDEYREELRENLEVGYEVLTVRATDGDS  298 (2531)
T ss_pred             chhhhhhhhhh--hheeEEEEEeeecCCCcccceeEEEEEEeecCCCCcccchhHHHHHHhhccccCceEEEEEeccCCC
Confidence            56789999999  789999999999999999999999999999999999999974 578899988 99999999999999


Q ss_pred             CCCceEEEEEEeeCCCCeecEEEeCCCCEEEEceeCCCC--CEEEEEEEEEECCC--CceeEEEEEEEEcCCCCCCCeEe
Q psy5884          81 GVNAEITYSIYHVSNTGLHKFRIDPRSGVIETTGKLIAG--EQYSITVQATDTGG--KSSQTIVEVSVVPGPNTRSPVFQ  156 (195)
Q Consensus        81 ~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~~~ld~~--~~~~l~v~a~D~~~--~~~~~~v~i~V~~d~nd~~P~f~  156 (195)
                      ++|+.+.|++..  |.++..|.||+.+|.|++..++|+|  +.|.|.|.|+|.|.  -..+++|.|+|. |+|||+|+|.
T Consensus       299 p~Nani~Yrl~e--g~~~~~f~in~rSGvI~T~a~lDRE~~~~y~L~VeAsDqG~~pgp~Ta~V~itV~-D~NDNaPqFs  375 (2531)
T KOG4289|consen  299 PPNANIRYRLLE--GNAKNVFEINPRSGVISTRAPLDREELESYQLDVEASDQGRPPGPRTAMVEITVE-DENDNAPQFS  375 (2531)
T ss_pred             CCCCceEEEecC--CCccceeEEcCccceeeccCccCHHhhhheEEEEEeccCCCCCCCceEEEEEEEE-ecCCCCcccc
Confidence            999999999976  5678899999999999999999988  47999999999986  234899999999 9999999999


Q ss_pred             cCeeEEEEecCCCCCeEEEEEEEEeCCCCCC------cCcccc
Q psy5884         157 QNTYDVNVSEGASINSTVATITVSRLASGCA------IMNKEE  193 (195)
Q Consensus       157 ~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~~------i~~~~~  193 (195)
                      ...|.+.|+|+..++++|++++|+|.|.|.|      |++||.
T Consensus       376 e~~Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~  418 (2531)
T KOG4289|consen  376 EKRYVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNG  418 (2531)
T ss_pred             ccceEEEecccCCCCceEEEEEecccCCCcCceEEEEeeccCc
Confidence            9999999999999999999999999999965      777775

>KOG4289|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here Back     alignment and domain information
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here Back     alignment and domain information
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>smart00112 CA Cadherin repeats Back     alignment and domain information
>smart00112 CA Cadherin repeats Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion Back     alignment and domain information
>smart00736 CADG Dystroglycan-type cadherin-like domains Back     alignment and domain information
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,] Back     alignment and domain information
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3) Back     alignment and domain information
>TIGR01965 VCBS_repeat VCBS repeat Back     alignment and domain information
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins Back     alignment and domain information
>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain Back     alignment and domain information
>smart00736 CADG Dystroglycan-type cadherin-like domains Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
2a62_A322 Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length 4e-06
1q55_A 880 W-Shaped Trans Interactions Of Cadherins Model Base 7e-06
1l3w_A 546 C-Cadherin Ectodomain Length = 546 8e-06
3ubh_A419 Crystal Structure Of Drosophila N-Cadherin Ec1-4 Le 4e-04
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3 Length = 322 Back     alignment and structure 
Iteration: 1

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 36  PVSLTVNLNDINDNAPRL------PMIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYS 89
           P    + + DINDNAP          +P + I  G +   +   +A D   G +A++ YS
Sbjct: 89  PSEFIIKVQDINDNAPEFLNGPYHATVPEMSI-LGTSVTNVTATDADDPVYGNSAKLVYS 147
Query: 90  IYHVSNTGLHKFRIDPRSGVIETTGKLI---AGEQYSITVQATDTGGKS---SQTIVEVS 143
           I      G   F I+P + +I+T    +   A E+Y + +QA D GG S   S T     
Sbjct: 148 ILE----GQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTV 203
Query: 144 VVPGPNTRSPVFQQNTYDVNVSEGASINSTVATI 177
            +   N   P F Q+ Y  +V E   + + +  +
Sbjct: 204 TLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRV 237
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes Obtained By Electron Tomography Length = 880 Back     alignment and structure
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain Length = 546 Back     alignment and structure
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4 Length = 419 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 9e-27
3ubf_A 316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 1e-14
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 1e-13
3ubh_A 419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 3e-25
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 7e-16
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 5e-14
3ubh_A 419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 2e-11
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 1e-24
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 9e-20
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 2e-16
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 3e-15
3q2w_A559 Cadherin-2; cell adhesion, calcium binding; HET: M 6e-14
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 5e-24
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 3e-17
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 1e-16
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 2e-14
3q2v_A550 Cadherin-1; cell adhesion, calcium binding; HET: M 4e-14
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 5e-24
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 4e-17
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 2e-16
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 2e-16
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 3e-15
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 6e-08
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 9e-24
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 4e-16
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 1e-14
1l3w_A546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 2e-13
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 2e-13
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 9e-24
2a62_A 322 Cadherin-8; extracellular domain, homodimer, calci 4e-15
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 8e-11
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 2e-20
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 1e-19
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 2e-20
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 2e-18
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 2e-19
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 4e-19
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 9e-18
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 4e-19
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 3e-18
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 6e-19
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 3e-18
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 9e-11
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 2e-17
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 7e-17
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 2e-17
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 9e-16
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 8e-17
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 2e-16
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 1e-15
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 4e-04
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 2e-15
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 9e-15
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 3e-13
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 2e-04
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 4e-13
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 4e-13
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 6e-10
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 1e-08
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
 Score =  102 bits (257), Expect = 9e-27
 Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 24/193 (12%)

Query: 3   VVSKENLDRDPPNPGKFR----FQVIAREKQGTAASVPVSLTVNLNDINDNAPR-----L 53
           V  K+  D +   P K               G   +    + + + D+ND  P      L
Sbjct: 52  VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPL 111

Query: 54  PMIPPIQ--IQAGEARRQIVKIEATDNDLGVNAEITYSIYHVSNTGLHKFRIDPRSGVIE 111
           PM   +Q           +  ++A D D   N  I Y I  V +    +F +D RSGV+ 
Sbjct: 112 PMQAVVQLNAPPNT---PVFTLQARDPDTDHN--IHYFI--VRDRTGGRFEVDERSGVVR 164

Query: 112 TTGKL--IAGEQYSITVQATDTGG----KSSQTIVEVSVVPGPNTRSPVFQQNTYDVNVS 165
           T G        +Y + V+A D  G    +  Q+  E  +      R+P F   +Y+  + 
Sbjct: 165 TRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIP 224

Query: 166 EGASINSTVATIT 178
           E    +S + +I 
Sbjct: 225 ENQKKDSDIISIK 237
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322 Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215 Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215 Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210 Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218 Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218 Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213 Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213 Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246 Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246 Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207 Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207 Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203 Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203 Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215 Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215 Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110 Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110 Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100 Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99 Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105 Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99 Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99 Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 100.0
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 100.0
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 100.0
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 100.0
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 100.0
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 100.0
3q2v_A 550 Cadherin-1; cell adhesion, calcium binding; HET: M 100.0
3ubh_A419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 100.0
1l3w_A 546 EP-cadherin, C-cadherin; cell adhesion, calcium bi 100.0
3ubh_A 419 Neural-cadherin; cell adhesion; 2.70A {Drosophila 100.0
3q2w_A 559 Cadherin-2; cell adhesion, calcium binding; HET: M 100.0
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 100.0
1q55_A 880 EP-cadherin, C-cadherin; trans interaction, desmos 100.0
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 100.0
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 100.0
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 99.98
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 99.98
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 99.97
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 99.97
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 99.97
3ubf_A316 Neural-cadherin; cell adhesion; 2.50A {Drosophila 99.96
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 99.95
2a62_A322 Cadherin-8; extracellular domain, homodimer, calci 99.95
3mvs_A210 Cadherin-23, otocadherin; adhesion, extracellular 99.95
4apx_B242 Protocadherin-15, otocadherin; cell adhesion, hear 99.94
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 99.94
2qvi_A215 Cadherin-2; beta barrel, strand SWAP, domain SWAP, 99.94
2a4e_A215 Cadherin-11; dimer, calcium binding, cell adhesion 99.93
3qrb_A213 Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu 99.92
3ppe_A203 Vascular endothelial cadherin; extracellular cadhe 99.92
3lnd_A207 CDH6 protein, cadherin 6; cell adhesion, cell memb 99.91
3k5r_A218 Cadherin 13; mouse, structural protein; 2.00A {Mus 99.91
2x2u_A246 Proto-oncogene tyrosine-protein kinase receptor RE 99.9
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 99.83
4apx_B242 Protocadherin-15, otocadherin; cell adhesion, hear 99.82
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 99.81
1wyj_A125 Protocadherin beta 14; SS bond, structural genomic 99.76
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 99.72
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 99.72
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 99.66
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 99.65
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 99.64
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 99.64
2yqg_A123 Desmoglein-2, HDGC; cadherin, structural genomics, 99.46
1ncg_A110 N-cadherin; cell adhesion protein; 2.10A {Mus musc 99.44
1wuz_A103 Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p 99.37
2yst_A119 Protocadherin-7; BH-PCDH, beta-sandwich, structura 99.28
1wyj_A125 Protocadherin beta 14; SS bond, structural genomic 99.07
2ee0_A114 Protocadherin-9; Ca domain, structural genomics, N 99.07
2omz_B105 Epithelial-cadherin; leucine-rich-repeat, nvasion 98.85
3k6f_A100 T-cadherin; cell adhesion, calcium, cell membrane, 98.78
3k6i_A99 T-cadherin; cell adhesion, alternative splicing, c 98.77
3k6d_A99 T-cadherin; cell adhesion; 1.80A {Xenopus laevis} 98.76
1zvn_A99 Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal 98.75
1zxk_A98 Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu 98.71
1wuz_A103 Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p 97.84
3pdd_A190 Glycoside hydrolase, family 9; CBHA, beta-sandwich 95.47
2yrl_A102 KIAA1837 protein; PKD domain, NPPSFA, national pro 91.89
1op4_A159 Neural-cadherin; beta sandwich, cadherin-like doma 90.51
2yhg_A437 SDE_182CT, cellulose-binding protein; hydrolase, g 89.57
2kpn_A103 Bacillolysin; solution structure, BIG_3 domain, PF 88.43
2yrl_A102 KIAA1837 protein; PKD domain, NPPSFA, national pro 86.58
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=2.1e-40  Score=265.26  Aligned_cols=179  Identities=25%  Similarity=0.396  Sum_probs=163.5

Q ss_pred             EEecCCCCCCCCCCCCeEEEEEEEEECCC-CCeEeeEEEEEEEEecCCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeC
Q psy5884           2 LVVSKENLDRDPPNPGKFRFQVIAREKQG-TAASVPVSLTVNLNDINDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDN   78 (195)
Q Consensus         2 ~i~~~~~LD~E~~~~~~~~l~v~a~D~~~-~~~~~~~~v~I~V~DvNDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~   78 (195)
                      .|++.++||||.  ...|.|.|.|+|.++ ++++++++|.|.|.|+|||+|.|... +.+.++|+.+ |+.++++.|+|+
T Consensus        56 ~i~~~~~LDrE~--~~~y~l~v~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~  133 (322)
T 2a62_A           56 DIHAIKRLDREE--KAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDA  133 (322)
T ss_dssp             EEEECSCCCTTT--CSBCCEEEEEECTTTCSEEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTTCBCCCCCCCBC
T ss_pred             EEEEeccCCccc--ccEEEEEEEEEECCCCCcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeC
Confidence            467889999999  889999999999875 46888999999999999999999886 5789999997 999999999999


Q ss_pred             CC---CCCceEEEEEEeeCCCCeecEEEeCCCCEEEEc-eeCCCC--CEEEEEEEEEECCC----CceeEEEEEEEEcCC
Q psy5884          79 DL---GVNAEITYSIYHVSNTGLHKFRIDPRSGVIETT-GKLIAG--EQYSITVQATDTGG----KSSQTIVEVSVVPGP  148 (195)
Q Consensus        79 D~---~~n~~~~y~i~~~~~~~~~~F~id~~tG~i~~~-~~ld~~--~~~~l~v~a~D~~~----~~~~~~v~i~V~~d~  148 (195)
                      |.   |.|+.++|+|..+    ..+|.|++.+|.|++. +.||||  ..|.|.|.|+|.|.    ++++++|.|+|. |+
T Consensus       134 D~~~~G~n~~i~Y~i~~~----~~~F~Id~~tG~i~~~~~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~-Dv  208 (322)
T 2a62_A          134 DDPVYGNSAKLVYSILEG----QPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLT-DV  208 (322)
T ss_dssp             SCSSSTTSSCEEEEEEEC----TTTEEECTTTCCEEECSSCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEEC-CC
T ss_pred             CCCCCCccEEEEEEEccC----CCCEEEecCCCEEEecccCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEEE-ec
Confidence            96   7899999999862    3689999999999998 899987  47999999999875    578899999999 99


Q ss_pred             CCCCCeEecCeeEEEEecCCCCCeEEEEEEEEeCCCCCC
Q psy5884         149 NTRSPVFQQNTYDVNVSEGASINSTVATITVSRLASGCA  187 (195)
Q Consensus       149 nd~~P~f~~~~~~~~v~E~~~~g~~v~~v~a~D~D~g~~  187 (195)
                      ||++|.|.+..|.+.|+|+.++|+.|+++.|+|+|.|.|
T Consensus       209 NDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n  247 (322)
T 2a62_A          209 NDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGEN  247 (322)
T ss_dssp             CCCCCCCSCSEEEEEECSCCSSCCEEEEEECCCSSCGGG
T ss_pred             CCCCCeecCCCceeEeECCCCCCcEEEEEEEEeCCCCCC
Confidence            999999999999999999999999999999999999854
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Back     alignment and structure
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Back     alignment and structure
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Back     alignment and structure
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Back     alignment and structure
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Back     alignment and structure
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Back     alignment and structure
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A Back     alignment and structure
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B* Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Back     alignment and structure
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Back     alignment and structure
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Back     alignment and structure
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Back     alignment and structure
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Back     alignment and structure
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Back     alignment and structure
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B* Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Back     alignment and structure
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Back     alignment and structure
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Back     alignment and structure
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus} Back     alignment and structure
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Back     alignment and structure
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Back     alignment and structure
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Back     alignment and structure
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Back     alignment and structure
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Back     alignment and structure
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Back     alignment and structure
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus} Back     alignment and structure
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A Back     alignment and structure
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1 Back     alignment and structure
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans} Back     alignment and structure
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579} Back     alignment and structure
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 195
d1l3wa1100 b.1.6.1 (A:1-100) C-cadherin ectodomain {African c 3e-10
d2omzb1104 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human 8e-10
d1ncia_102 b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu 4e-08
d1ncja2114 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mu 4e-04
d1l3wa5107 b.1.6.1 (A:434-540) C-cadherin ectodomain {African 0.003
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 53.2 bits (127), Expect = 3e-10
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 55  MIPPIQIQAGEARRQIVKIEATDNDLGVNAEITYSIY--HVSNTGLHKFRIDPRSGVIET 112
           +IPPI++   E      ++    ++     ++ YSI      N     FRI+  +G +  
Sbjct: 3   VIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLV 62

Query: 113 TGKLI--AGEQYSITVQATDTGGKSSQTIVEVSV 144
           T  L     ++Y ++  A    G   +  +E+++
Sbjct: 63  TRPLDREEYDKYVLSSHAVSENGSPVEEPMEITI 96
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 114 Back     information, alignment and structure
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
d1edha2112 E-cadherin (epithelial) {Mouse (Mus musculus) [Tax 99.82
d1l3wa2113 C-cadherin ectodomain {African clawed frog (Xenopu 99.82
d1l3wa4107 C-cadherin ectodomain {African clawed frog (Xenopu 99.8
d1ncja2114 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.8
d1op4a_136 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.77
d1l3wa5107 C-cadherin ectodomain {African clawed frog (Xenopu 99.72
d1l3wa3113 C-cadherin ectodomain {African clawed frog (Xenopu 99.72
d1l3wa1100 C-cadherin ectodomain {African clawed frog (Xenopu 99.63
d2omzb1104 E-cadherin (epithelial) {Human (Homo sapiens) [Tax 99.62
d1ncia_102 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 99.58
d1edha2112 E-cadherin (epithelial) {Mouse (Mus musculus) [Tax 98.77
d1l3wa2113 C-cadherin ectodomain {African clawed frog (Xenopu 98.72
d1op4a_136 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 98.65
d1l3wa1100 C-cadherin ectodomain {African clawed frog (Xenopu 98.6
d1ncia_102 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 98.59
d2omzb1104 E-cadherin (epithelial) {Human (Homo sapiens) [Tax 98.58
d1ncja2114 N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 98.57
d1l3wa5107 C-cadherin ectodomain {African clawed frog (Xenopu 98.52
d1l3wa4107 C-cadherin ectodomain {African clawed frog (Xenopu 98.41
d1l3wa3113 C-cadherin ectodomain {African clawed frog (Xenopu 98.4
d1u2ca1103 Dystroglycan, N-terminal domain {Mouse (Mus muscul 95.48
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=4.9e-20  Score=123.82  Aligned_cols=99  Identities=28%  Similarity=0.383  Sum_probs=83.2

Q ss_pred             CCCCCccCCC-CcEEEEcCCC-CceEEEEEEeeCCCC---CCceEEEEEEeeCC--CCeecEEEeCCCCEEEEc-eeCCC
Q psy5884          47 NDNAPRLPMI-PPIQIQAGEA-RRQIVKIEATDNDLG---VNAEITYSIYHVSN--TGLHKFRIDPRSGVIETT-GKLIA  118 (195)
Q Consensus        47 NDn~P~f~~~-~~~~v~e~~~-g~~v~~v~a~D~D~~---~n~~~~y~i~~~~~--~~~~~F~id~~tG~i~~~-~~ld~  118 (195)
                      |||+|.|.+. +.+.|+|+.+ |+.+++|.|+|+|.|   .|+.++|+|..+..  ....+|.|++.+|.|++. +.||+
T Consensus         1 NDn~P~F~~~~y~~~V~E~~~~gt~v~~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~lD~   80 (112)
T d1edha2           1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR   80 (112)
T ss_dssp             SCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSCCCT
T ss_pred             CCCCCccCCCEEEEEEECCCCCCCEEEEEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEeccccc
Confidence            8999999987 5789999988 999999999999976   46789999986432  244689999999999864 57898


Q ss_pred             C--CEEEEEEEEEECCC--CceeEEEEEEEE
Q psy5884         119 G--EQYSITVQATDTGG--KSSQTIVEVSVV  145 (195)
Q Consensus       119 ~--~~~~l~v~a~D~~~--~~~~~~v~i~V~  145 (195)
                      |  ..|.|.|.|+|.|.  ++++++|.|+|.
T Consensus        81 E~~~~y~l~V~a~D~g~~~~~~~~~v~I~V~  111 (112)
T d1edha2          81 ESYPTYTLVVQAADLQGEGLSTTAKAVITVK  111 (112)
T ss_dssp             TTCCEEEEEEEEETGGGTSCEEEEEEEEEEE
T ss_pred             ccCcEEEEEEEEEECCCCccEEEEEEEEEEE
Confidence            7  47999999999876  567788888887
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure