Psyllid ID: psy588
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 903 | 2.2.26 [Sep-21-2011] | |||||||
| Q28623 | 771 | Sarcolemmal membrane-asso | no | N/A | 0.403 | 0.472 | 0.441 | 6e-87 | |
| Q14BN4 | 828 | Sarcolemmal membrane-asso | yes | N/A | 0.403 | 0.439 | 0.441 | 1e-86 | |
| Q3URD3 | 845 | Sarcolemmal membrane-asso | yes | N/A | 0.434 | 0.463 | 0.414 | 2e-86 | |
| P0C219 | 858 | Sarcolemmal membrane-asso | no | N/A | 0.400 | 0.421 | 0.438 | 3e-86 | |
| O74388 | 301 | Uncharacterized protein C | yes | N/A | 0.171 | 0.514 | 0.331 | 7e-17 | |
| Q9Y228 | 551 | TRAF3-interacting JNK-act | no | N/A | 0.167 | 0.274 | 0.310 | 1e-12 | |
| Q10322 | 267 | Probable E3 ubiquitin-pro | no | N/A | 0.131 | 0.445 | 0.354 | 7e-12 | |
| Q06001 | 478 | Factor arrest protein 10 | no | N/A | 0.073 | 0.138 | 0.452 | 3e-09 | |
| Q8C0G2 | 513 | TRAF3-interacting JNK-act | no | N/A | 0.194 | 0.343 | 0.273 | 9e-09 |
| >sp|Q28623|SLMAP_RABIT Sarcolemmal membrane-associated protein OS=Oryctolagus cuniculus GN=SLMAP PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 322 bits (826), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 172/390 (44%), Positives = 249/390 (63%), Gaps = 26/390 (6%)
Query: 2 AGTAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHA 61
+ AI TCRPNSHPF ER + L + +KIGR +AR + A +N FDCKVLSRNHA
Sbjct: 3 SALAIFTCRPNSHPFQERHVYL------DEPIKIGRSVARCRPAQNNATFDCKVLSRNHA 56
Query: 62 LIWY--YNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIETNRNT 119
L+W+ GKFYLQDTKSSNGTF+N+QRLS+ +EES P E+ SGD++QFGVDV E R
Sbjct: 57 LVWFDHKTGKFYLQDTKSSNGTFINSQRLSRGSEESPPCEILSGDIIQFGVDVTENTRK- 115
Query: 120 PVTHGCIIANLKLFLPDGKEAK----------ASPTSMLISSMPL---EELYQLNTCIQE 166
VTHGCI++ +KLFLPDG EA+ SP + ++ P +EL+QL+ +QE
Sbjct: 116 -VTHGCIVSTIKLFLPDGMEARLRSDVIHAPLPSPVDKVAANTPSMYSQELFQLSQYLQE 174
Query: 167 ALQRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDD 226
AL RE ML+ KL+ LQ ++ ++A+D SW+ALI EDRLLSR+E + +QL A SK+ T+D
Sbjct: 175 ALHREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLEVMGNQLQACSKNQTED 234
Query: 227 KLRDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLD 286
LR E+ L DK YE KE ++++L EK+EV++K + ER L N E+EC++L+E+ +
Sbjct: 235 SLRKELIALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERSLSNTEDECTHLKEMNE 294
Query: 287 RNRDELEEIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTL 346
R ++EL E+ KY V + K+ D+L + ++ +K Q E + Q ++D
Sbjct: 295 RTQEELRELANKYNGAVNEIKDLS---DKLKVAEGKQEEIQQKGQAEKKELQHKIDEMEE 351
Query: 347 KDNLMHDKLKNYYMNFHIIKEKMTNIKNEL 376
K+ + K++ + E++T ++ L
Sbjct: 352 KEQELQAKIEALQADNDFTNERLTALQEHL 381
|
May play a role during myoblast fusion. Oryctolagus cuniculus (taxid: 9986) |
| >sp|Q14BN4|SLMAP_HUMAN Sarcolemmal membrane-associated protein OS=Homo sapiens GN=SLMAP PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q3URD3|SLMAP_MOUSE Sarcolemmal membrane-associated protein OS=Mus musculus GN=Slmap PE=1 SV=2 | Back alignment and function description |
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| >sp|P0C219|SLMAP_RAT Sarcolemmal membrane-associated protein OS=Rattus norvegicus GN=Slmap PE=2 SV=1 | Back alignment and function description |
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| >sp|O74388|YNVD_SCHPO Uncharacterized protein C3H7.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3H7.13 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9Y228|T3JAM_HUMAN TRAF3-interacting JNK-activating modulator OS=Homo sapiens GN=TRAF3IP3 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q10322|DMA1_SCHPO Probable E3 ubiquitin-protein ligase dma1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dma1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q06001|FAR10_YEAST Factor arrest protein 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAR10 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8C0G2|T3JAM_MOUSE TRAF3-interacting JNK-activating modulator OS=Mus musculus GN=Traf3ip3 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 903 | ||||||
| 427795273 | 941 | hypothetical protein, partial [Rhipiceph | 0.430 | 0.413 | 0.459 | 8e-98 | |
| 427795089 | 960 | hypothetical protein, partial [Rhipiceph | 0.433 | 0.407 | 0.441 | 9e-96 | |
| 383862351 | 798 | PREDICTED: uncharacterized protein LOC10 | 0.434 | 0.491 | 0.462 | 9e-93 | |
| 328791908 | 795 | PREDICTED: hypothetical protein LOC41304 | 0.423 | 0.480 | 0.466 | 1e-92 | |
| 321475471 | 356 | hypothetical protein DAPPUDRAFT_44815 [D | 0.323 | 0.820 | 0.557 | 4e-92 | |
| 350400031 | 800 | PREDICTED: hypothetical protein LOC10074 | 0.423 | 0.477 | 0.466 | 7e-92 | |
| 443702914 | 380 | hypothetical protein CAPTEDRAFT_118963 [ | 0.401 | 0.955 | 0.459 | 1e-91 | |
| 340727948 | 800 | PREDICTED: hypothetical protein LOC10064 | 0.357 | 0.403 | 0.523 | 4e-91 | |
| 224066082 | 821 | PREDICTED: sarcolemmal membrane-associat | 0.708 | 0.779 | 0.327 | 1e-87 | |
| 166158160 | 822 | sarcolemma associated protein [Xenopus ( | 0.442 | 0.486 | 0.419 | 3e-87 |
| >gi|427795273|gb|JAA63088.1| hypothetical protein, partial [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 365 bits (936), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 191/416 (45%), Positives = 271/416 (65%), Gaps = 27/416 (6%)
Query: 5 AILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIW 64
AILTCRPNSHPF ER L L+ A K+GR +AR + AP+N IFDCKVLSRNHAL+W
Sbjct: 105 AILTCRPNSHPFPERVLNLDQPA------KVGRSVARCRQAPNNAIFDCKVLSRNHALLW 158
Query: 65 YYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIETNRNTPVTHG 124
Y NGKFYLQDTKSSNGTFVNNQRLSK +EES E+CSGD+VQFGVDV+E +R VTHG
Sbjct: 159 YENGKFYLQDTKSSNGTFVNNQRLSKGSEESPAQEVCSGDIVQFGVDVVENSRK--VTHG 216
Query: 125 CIIANLKLFLPDGKEAKASPTSMLI-----SSMPLEELYQLNTCIQEALQRENMLKNKLS 179
CI+A L+LFLPDGKEAKASP++ LI +S+ +ELYQL+ CIQEAL RE +++NK++
Sbjct: 217 CIVATLRLFLPDGKEAKASPSTALIPAGAGTSITTQELYQLSQCIQEALHREQIIQNKIA 276
Query: 180 KLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKLRDEIKLLHRDK 239
LQ +V ++A++ +WKA+I+EDRLL+R+E LE+QL A +KS TDDKLR+EI L +++
Sbjct: 277 TLQRVVTSTQEASENNWKAMIEEDRLLNRIETLEAQLQACAKSATDDKLREEIARLQKER 336
Query: 240 STYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNLQELLDRNRDELEEIIKKY 299
YE+ KE +KK L EK+E +++ Q+ E N E+EC+ L+E+ + + E+ +
Sbjct: 337 ERYEDTAKESLKKALQEKLEALRRVQELEYTASNTEDECARLREVYEAAQKEISAL---- 392
Query: 300 QDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKDNLMHDKLKNYY 359
T+ + + I QL +E + + E + Q+ + ++ K+++
Sbjct: 393 ---ATRTDKHQKEIAQLQTQLKEAEELNQAMTEEKTALENQIQQLQKAEQVLAAKIESLR 449
Query: 360 MNFHIIKEKMTNIKNELGLETKVDQNILVKYFDDVHQILTQFDEYFLRFNESESSG 415
+ KE+++ +K + DQ +Y +D + L E +ES+ SG
Sbjct: 450 ADNDFAKEQLSAMK------ARFDQVKKAQYIEDGLETLNS-KENMPNHDESKDSG 498
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Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427795089|gb|JAA62996.1| hypothetical protein, partial [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
| >gi|383862351|ref|XP_003706647.1| PREDICTED: uncharacterized protein LOC100881837 [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|328791908|ref|XP_003251652.1| PREDICTED: hypothetical protein LOC413046 [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|321475471|gb|EFX86434.1| hypothetical protein DAPPUDRAFT_44815 [Daphnia pulex] | Back alignment and taxonomy information |
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| >gi|350400031|ref|XP_003485713.1| PREDICTED: hypothetical protein LOC100749154 [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|443702914|gb|ELU00737.1| hypothetical protein CAPTEDRAFT_118963 [Capitella teleta] | Back alignment and taxonomy information |
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| >gi|340727948|ref|XP_003402295.1| PREDICTED: hypothetical protein LOC100646046 [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|224066082|ref|XP_002197616.1| PREDICTED: sarcolemmal membrane-associated protein isoform 1 [Taeniopygia guttata] | Back alignment and taxonomy information |
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| >gi|166158160|ref|NP_001107286.1| sarcolemma associated protein [Xenopus (Silurana) tropicalis] gi|161612077|gb|AAI55681.1| LOC100135075 protein [Xenopus (Silurana) tropicalis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 903 | ||||||
| RGD|1307674 | 858 | Slmap "sarcolemma associated p | 0.397 | 0.418 | 0.425 | 2.8e-80 | |
| UNIPROTKB|E2QUI2 | 824 | SLMAP "Uncharacterized protein | 0.709 | 0.777 | 0.309 | 6.2e-78 | |
| UNIPROTKB|Q14BN4 | 828 | SLMAP "Sarcolemmal membrane-as | 0.601 | 0.655 | 0.341 | 6.3e-76 | |
| UNIPROTKB|E2QUK3 | 842 | SLMAP "Uncharacterized protein | 0.430 | 0.461 | 0.405 | 1e-75 | |
| UNIPROTKB|F1N8D3 | 848 | Gga.11048 "Uncharacterized pro | 0.481 | 0.512 | 0.395 | 2.1e-75 | |
| MGI|MGI:1933549 | 845 | Slmap "sarcolemma associated p | 0.430 | 0.460 | 0.402 | 3.5e-75 | |
| UNIPROTKB|F1SGJ6 | 287 | SLMAP "Uncharacterized protein | 0.283 | 0.891 | 0.512 | 4.4e-68 | |
| UNIPROTKB|E1BMC6 | 780 | SLMAP "Uncharacterized protein | 0.366 | 0.424 | 0.373 | 2.5e-65 | |
| POMBASE|SPBC3H7.13 | 301 | far10 "SIP/FAR complex FHA dom | 0.199 | 0.598 | 0.336 | 2.4e-18 | |
| DICTYBASE|DDB_G0290503 | 1492 | DDB_G0290503 [Dictyostelium di | 0.706 | 0.427 | 0.198 | 6.3e-16 |
| RGD|1307674 Slmap "sarcolemma associated protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 757 (271.5 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
Identities = 164/385 (42%), Positives = 237/385 (61%)
Query: 5 AILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIW 64
AI TCRPNSHPF ER + L+ +KIGR +AR + A +N FDCKVLSRNHAL+W
Sbjct: 6 AIFTCRPNSHPFQERHVYLDEP------IKIGRSVARCRPAQNNATFDCKVLSRNHALVW 59
Query: 65 YYN--GKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFGVDVIETNRNTPVT 122
+ + KFYLQDTKSSNGTF+N+QRLS+ +EES P E+ SGD++QFGVDV E R VT
Sbjct: 60 FDHKTSKFYLQDTKSSNGTFINSQRLSRGSEESPPCEILSGDIIQFGVDVTENTRKV-VT 118
Query: 123 HGCIIANLKLFLPDGKEAKA-----------SPTSMLISSMPL---EELYQLNTCIQEAL 168
HGCI++ +KLFLPDG EA+ SP + ++ P +EL+QL+ +QEAL
Sbjct: 119 HGCIVSTIKLFLPDGMEARLRSDDVIHAPLPSPVDKVAANTPSMYSQELFQLSQYLQEAL 178
Query: 169 QRENMLKNKLSKLQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKL 228
RE ML+ KL+ LQ ++ ++A+D SW+ALI EDRLLSR+E + +QL A SK+ T+D L
Sbjct: 179 HREQMLEQKLATLQRLLAITQEASDTSWQALIDEDRLLSRLEVMGNQLQACSKNQTEDSL 238
Query: 229 RDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKLVNIENECSNXXXXXXXX 288
R E+ L DK +YE KE ++++L EK+EV++K + ER L N E+EC++
Sbjct: 239 RKELVALQEDKHSYETTAKESLRRVLQEKIEVVRKLSEVERSLSNTEDECTHLREMNERT 298
Query: 289 XXXXXXIIKKYQDQVTKNKEFESTIDQLLNSNQEKSNTLEKLQYETLQAQKQLDAFTLKD 348
+ KY V + K+ D+L + ++ +K Q E + Q ++D K+
Sbjct: 299 QEELRELANKYNGAVNEIKDLS---DKLKAAEGKQEEIQQKGQAEKKELQAKIDDMEEKE 355
Query: 349 NLMHDKLKNYYMNFHIIKEKMTNIK 373
+ K++ + E++T ++
Sbjct: 356 QELQAKIEALQADNDFTNERLTALQ 380
|
|
| UNIPROTKB|E2QUI2 SLMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q14BN4 SLMAP "Sarcolemmal membrane-associated protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2QUK3 SLMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1N8D3 Gga.11048 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1933549 Slmap "sarcolemma associated protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SGJ6 SLMAP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BMC6 SLMAP "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| POMBASE|SPBC3H7.13 far10 "SIP/FAR complex FHA domain subunit Far10/Csc1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 903 | |||
| pfam00498 | 67 | pfam00498, FHA, FHA domain | 1e-15 | |
| cd00060 | 102 | cd00060, FHA, Forkhead associated domain (FHA); fo | 2e-13 | |
| smart00240 | 52 | smart00240, FHA, Forkhead associated domain | 9e-09 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 1e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-08 | |
| COG1716 | 191 | COG1716, COG1716, FOG: FHA domain [Signal transduc | 3e-08 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-08 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-07 | |
| TIGR03354 | 396 | TIGR03354, VI_FHA, type VI secretion system FHA do | 2e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-05 | |
| TIGR00634 | 563 | TIGR00634, recN, DNA repair protein RecN | 8e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 1e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-04 | |
| COG0497 | 557 | COG0497, RecN, ATPase involved in DNA repair [DNA | 3e-04 | |
| COG1579 | 239 | COG1579, COG1579, Zn-ribbon protein, possibly nucl | 3e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 8e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.003 | |
| TIGR03007 | 498 | TIGR03007, pepcterm_ChnLen, polysaccharide chain l | 0.004 | |
| TIGR01612 | 2757 | TIGR01612, 235kDa-fam, reticulocyte binding/rhoptr | 0.004 |
| >gnl|CDD|215951 pfam00498, FHA, FHA domain | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-15
Identities = 34/79 (43%), Positives = 41/79 (51%), Gaps = 14/79 (17%)
Query: 33 VKIGRCIARAKVAPSNGI-FDCKVLSRNHALIWYYNG-KFYLQDTKSSNGTFVNNQRLSK 90
V IGR +P I D +SR HA I Y G +FYL+D S+NGTFVN QRL
Sbjct: 1 VTIGR-------SPDCDIVLDDPSVSRRHAEIRYDGGGRFYLEDLGSTNGTFVNGQRLGP 53
Query: 91 TNEESAPHELCSGDVVQFG 109
P L GDV++ G
Sbjct: 54 E-----PVRLRDGDVIRLG 67
|
The FHA (Forkhead-associated) domain is a phosphopeptide binding motif. Length = 67 |
| >gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214578 smart00240, FHA, Forkhead associated domain | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224630 COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 903 | |||
| PF00498 | 68 | FHA: FHA domain; InterPro: IPR000253 The forkhead- | 99.64 | |
| cd00060 | 102 | FHA Forkhead associated domain (FHA); found in euk | 99.37 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 99.34 | |
| TIGR03354 | 396 | VI_FHA type VI secretion system FHA domain protein | 99.34 | |
| COG1716 | 191 | FOG: FHA domain [Signal transduction mechanisms] | 99.33 | |
| smart00240 | 52 | FHA Forkhead associated domain. Found in eukaryoti | 99.08 | |
| COG3456 | 430 | Predicted component of the type VI protein secreti | 98.95 | |
| KOG1882|consensus | 293 | 98.54 | ||
| KOG1881|consensus | 793 | 98.49 | ||
| KOG0245|consensus | 1221 | 98.33 | ||
| KOG1880|consensus | 337 | 97.65 | ||
| TIGR02500 | 410 | type_III_yscD type III secretion apparatus protein | 97.2 | |
| KOG0615|consensus | 475 | 96.76 | ||
| KOG4673|consensus | 961 | 96.6 | ||
| PRK03918 | 880 | chromosome segregation protein; Provisional | 96.37 | |
| KOG1892|consensus | 1629 | 95.95 | ||
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 94.83 | |
| KOG0241|consensus | 1714 | 94.29 | ||
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 94.29 | |
| PRK10698 | 222 | phage shock protein PspA; Provisional | 94.07 | |
| PRK11637 | 428 | AmiB activator; Provisional | 93.89 | |
| KOG0995|consensus | 581 | 93.89 | ||
| KOG0979|consensus | 1072 | 93.83 | ||
| KOG4643|consensus | 1195 | 93.8 | ||
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 93.63 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 93.58 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 93.37 | |
| COG1842 | 225 | PspA Phage shock protein A (IM30), suppresses sigm | 93.29 | |
| KOG0933|consensus | 1174 | 93.13 | ||
| PF04012 | 221 | PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T | 93.13 | |
| KOG0980|consensus | 980 | 92.97 | ||
| PRK03918 | 880 | chromosome segregation protein; Provisional | 92.79 | |
| KOG0996|consensus | 1293 | 92.55 | ||
| KOG2293|consensus | 547 | 92.5 | ||
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 92.38 | |
| TIGR02977 | 219 | phageshock_pspA phage shock protein A. Members of | 92.3 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 92.02 | |
| PF06785 | 401 | UPF0242: Uncharacterised protein family (UPF0242); | 91.47 | |
| KOG0804|consensus | 493 | 91.2 | ||
| KOG0161|consensus | 1930 | 91.06 | ||
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 90.51 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 90.48 | |
| TIGR01663 | 526 | PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase | 90.26 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 90.24 | |
| PF10211 | 189 | Ax_dynein_light: Axonemal dynein light chain; Inte | 89.91 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 89.67 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 89.67 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 89.58 | |
| KOG4643|consensus | 1195 | 89.55 | ||
| KOG0161|consensus | 1930 | 89.52 | ||
| KOG0971|consensus | 1243 | 89.15 | ||
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 88.96 | |
| TIGR01000 | 457 | bacteriocin_acc bacteriocin secretion accessory pr | 88.83 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 88.76 | |
| PRK11637 | 428 | AmiB activator; Provisional | 88.7 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 88.62 | |
| KOG1029|consensus | 1118 | 88.45 | ||
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 87.82 | |
| PF07926 | 132 | TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: | 87.63 | |
| COG4372 | 499 | Uncharacterized protein conserved in bacteria with | 87.62 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 87.55 | |
| KOG4807|consensus | 593 | 86.9 | ||
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 86.68 | |
| KOG0976|consensus | 1265 | 86.16 | ||
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 86.12 | |
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 85.83 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 85.57 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 85.27 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 85.19 | |
| PF02841 | 297 | GBP_C: Guanylate-binding protein, C-terminal domai | 85.18 | |
| KOG0996|consensus | 1293 | 84.92 | ||
| PF15070 | 617 | GOLGA2L5: Putative golgin subfamily A member 2-lik | 84.9 | |
| KOG1029|consensus | 1118 | 84.86 | ||
| PF05700 | 221 | BCAS2: Breast carcinoma amplified sequence 2 (BCAS | 84.42 | |
| KOG1853|consensus | 333 | 84.33 | ||
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 83.75 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 83.67 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 83.46 | |
| KOG0250|consensus | 1074 | 82.8 | ||
| TIGR03007 | 498 | pepcterm_ChnLen polysaccharide chain length determ | 82.75 | |
| PF10473 | 140 | CENP-F_leu_zip: Leucine-rich repeats of kinetochor | 82.68 | |
| KOG0982|consensus | 502 | 81.73 | ||
| KOG4807|consensus | 593 | 81.71 | ||
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 81.51 | |
| PF10186 | 302 | Atg14: UV radiation resistance protein and autopha | 81.14 | |
| KOG0980|consensus | 980 | 80.88 | ||
| PF15556 | 252 | Zwint: ZW10 interactor | 80.88 | |
| PF15066 | 527 | CAGE1: Cancer-associated gene protein 1 family | 80.56 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 80.46 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 80.31 | |
| KOG0994|consensus | 1758 | 80.17 |
| >PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-16 Score=128.12 Aligned_cols=67 Identities=42% Similarity=0.710 Sum_probs=61.4
Q ss_pred EEEcCCCCcCCCCCCceeeCCccccccceEEEEECC-EEEEEECCCCCceeeCCEecCCCCCCCCCeecCCCCEEEEc
Q psy588 33 VKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNG-KFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109 (903)
Q Consensus 33 VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG-~~yIrDLGSTNGTFVNGqRLs~g~~eSePveL~dGDIIrLG 109 (903)
++|||+ ..|+++++++.|||.||.|.+.++ .|+|+|++|+|||||||+++.+ ..+++|.+||+|.||
T Consensus 1 ~~iGR~------~~~di~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~~l~~----~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRS------PDCDIVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQRLGP----GEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESS------TTSSEEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTEEESS----TSEEEE-TTEEEEET
T ss_pred CEEcCC------CCCCEEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCEEcCC----CCEEECCCCCEEEcC
Confidence 589999 789999999999999999999998 9999999999999999999998 357999999999998
|
It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A .... |
| >cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
| >TIGR03354 VI_FHA type VI secretion system FHA domain protein | Back alignment and domain information |
|---|
| >COG1716 FOG: FHA domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00240 FHA Forkhead associated domain | Back alignment and domain information |
|---|
| >COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1882|consensus | Back alignment and domain information |
|---|
| >KOG1881|consensus | Back alignment and domain information |
|---|
| >KOG0245|consensus | Back alignment and domain information |
|---|
| >KOG1880|consensus | Back alignment and domain information |
|---|
| >TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family | Back alignment and domain information |
|---|
| >KOG0615|consensus | Back alignment and domain information |
|---|
| >KOG4673|consensus | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG1892|consensus | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG0241|consensus | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >PRK10698 phage shock protein PspA; Provisional | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >KOG0995|consensus | Back alignment and domain information |
|---|
| >KOG0979|consensus | Back alignment and domain information |
|---|
| >KOG4643|consensus | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0933|consensus | Back alignment and domain information |
|---|
| >PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription | Back alignment and domain information |
|---|
| >KOG0980|consensus | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG0996|consensus | Back alignment and domain information |
|---|
| >KOG2293|consensus | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >TIGR02977 phageshock_pspA phage shock protein A | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function | Back alignment and domain information |
|---|
| >KOG0804|consensus | Back alignment and domain information |
|---|
| >KOG0161|consensus | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4643|consensus | Back alignment and domain information |
|---|
| >KOG0161|consensus | Back alignment and domain information |
|---|
| >KOG0971|consensus | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >KOG1029|consensus | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) | Back alignment and domain information |
|---|
| >COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >KOG4807|consensus | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >KOG0976|consensus | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
| >PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma | Back alignment and domain information |
|---|
| >KOG0996|consensus | Back alignment and domain information |
|---|
| >PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 | Back alignment and domain information |
|---|
| >KOG1029|consensus | Back alignment and domain information |
|---|
| >PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function | Back alignment and domain information |
|---|
| >KOG1853|consensus | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
| >KOG0250|consensus | Back alignment and domain information |
|---|
| >TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
| >PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] | Back alignment and domain information |
|---|
| >KOG0982|consensus | Back alignment and domain information |
|---|
| >KOG4807|consensus | Back alignment and domain information |
|---|
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
| >PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking | Back alignment and domain information |
|---|
| >KOG0980|consensus | Back alignment and domain information |
|---|
| >PF15556 Zwint: ZW10 interactor | Back alignment and domain information |
|---|
| >PF15066 CAGE1: Cancer-associated gene protein 1 family | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >KOG0994|consensus | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 95.3 bits (236), Expect = 5e-20
Identities = 111/632 (17%), Positives = 206/632 (32%), Gaps = 172/632 (27%)
Query: 171 ENMLKNKLSK--LQHIVIDLKKAADVSWKALIQEDRLLSRVEFLESQLAAYSKSFTDDKL 228
++M K+ LSK + HI++ S A+ RL L S+ + F ++ L
Sbjct: 39 QDMPKSILSKEEIDHIIM--------SKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVL 87
Query: 229 RDEIKLLHRDKSTYENQLKEVMKKMLAEKVEVMQKCQDTERKL-VNIENECSNLQELLDR 287
R K L E + +M +M E+ + + K V+ L++ L
Sbjct: 88 RINYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 288 NRDELEEII-------KKY-QDQVTKNKEFESTIDQL---LNSNQEKS--NTLEKLQYET 334
R +I K + V + + + +D LN S LE LQ
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ--K 204
Query: 335 LQAQKQLDAFTLKDNLMHDKLKNYYMNFHIIKEKMTNIKNELGLETKVDQN---IL---- 387
L Q D N + H I+ ++ + L++K +N +L
Sbjct: 205 LLYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRL-----LKSKPYENCLLVLLNVQ 254
Query: 388 ----VKYFDDVHQIL--TQF-----------------DEYFLRFNESESSGLNSIEDIEK 424
F+ +IL T+F D + + E L ++ ++
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDC 313
Query: 425 VTKDLREQLHTAQEEYTSLQEIVNRNEEQLAFLEQSKYLHLDKIGG-LELQLEKLKQTYN 483
+DL ++ T S+ I + LA + K+++ DK+ +E L L+
Sbjct: 314 RPQDLPREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 484 SDCYENEKFGKAYNCDTLLINEEKTVAPNQKDVNI-IDV------SNQYNSEKDFVS--- 533
+ ++ V P +I + + V+
Sbjct: 372 RKMF--DRLS---------------VFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 534 ----INKEIEESSRKIDDINAEIT-KCTNE------LVDAKNCLVKNEKW---------- 572
+ K+ +ES+ I I E+ K NE +VD N +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 573 ----------VINLQEQFSLLEKS--KETWVSLKLNSAESQSSASLQSQLNDALDNIKKY 620
I E+ +L ++ K+ + +AS + + L +K Y
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS--GSILNTLQQLKFY 530
Query: 621 KEEHSKMTMEIESLKEKLKFSQSKENDLLEEYEKLKLVIKDYQNVLPSIVESMNNTKDKP 680
K + I +ND +YE+L + + LP I E++ +K
Sbjct: 531 K-PY------I------------CDND--PKYERL---VNAILDFLPKIEENLICSKYT- 565
Query: 681 QDSEQSIEEEITQQSLNPLSSELDETIHKNVE 712
++ + +L + E HK V+
Sbjct: 566 ---------DLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 | Back alignment and structure |
|---|
| >2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 | Back alignment and structure |
|---|
| >1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 | Back alignment and structure |
|---|
| >2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115 | Back alignment and structure |
|---|
| >2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 | Back alignment and structure |
|---|
| >2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 | Back alignment and structure |
|---|
| >3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 | Back alignment and structure |
|---|
| >1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 | Back alignment and structure |
|---|
| >3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 | Back alignment and structure |
|---|
| >1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 | Back alignment and structure |
|---|
| >3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 | Back alignment and structure |
|---|
| >1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 | Back alignment and structure |
|---|
| >1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 | Back alignment and structure |
|---|
| >3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106 | Back alignment and structure |
|---|
| >2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131 | Back alignment and structure |
|---|
| >2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 | Back alignment and structure |
|---|
| >3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 | Back alignment and structure |
|---|
| >3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 | Back alignment and structure |
|---|
| >1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Length = 120 | Back alignment and structure |
|---|
| >1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Length = 124 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 903 | |||
| 3gqs_A | 106 | Adenylate cyclase-like protein; FHA domain, struct | 99.75 | |
| 3po8_A | 100 | RV0020C protein, putative uncharacterized protein | 99.73 | |
| 2xt9_B | 115 | Putative signal transduction protein GARA; lyase-s | 99.72 | |
| 4h87_A | 130 | Kanadaptin; FHA domain of PF00498, mRNA processing | 99.71 | |
| 1r21_A | 128 | Antigen KI-67; beta sandwich, cell cycle; NMR {Hom | 99.71 | |
| 1uht_A | 118 | Expressed protein; FHA domain, beta-sandwich, anti | 99.7 | |
| 1mzk_A | 139 | Kinase associated protein phosphatase; beta sandwi | 99.7 | |
| 1lgp_A | 116 | Cell cycle checkpoint protein CHFR; FHA, tungstate | 99.7 | |
| 3va4_A | 132 | Mediator of DNA damage checkpoint protein 1; cell | 99.7 | |
| 2kb3_A | 143 | Oxoglutarate dehydrogenase inhibitor; forkhead-ass | 99.69 | |
| 1dmz_A | 158 | Protein (protein kinase SPK1); beta-sandwich, anti | 99.66 | |
| 2kfu_A | 162 | RV1827 PThr 22; FHA domain, phosphorylation, intra | 99.65 | |
| 2jpe_A | 140 | Nuclear inhibitor of protein phosphatase 1; FHA do | 99.65 | |
| 2jqj_A | 151 | DNA damage response protein kinase DUN1; protein/p | 99.64 | |
| 1gxc_A | 149 | CHK2, CDS1, serine/threonine-protein kinase CHK2; | 99.64 | |
| 3oun_A | 157 | Putative uncharacterized protein TB39.8; peptidogl | 99.64 | |
| 1qu5_A | 182 | Protein kinase SPK1; FHA, RAD53, transferase; NMR | 99.63 | |
| 1wln_A | 120 | Afadin; beta sandwich, FHA domain, structural geno | 99.63 | |
| 3hx1_A | 131 | SLR1951 protein; P74513_SYNY3, adenylate cyclase-l | 99.63 | |
| 2pie_A | 138 | E3 ubiquitin-protein ligase RNF8; FHA domain, comp | 99.62 | |
| 2csw_A | 145 | Ubiquitin ligase protein RNF8; 11-stranded beta sa | 99.59 | |
| 1g6g_A | 127 | Protein kinase RAD53; beta-sandwich, phosphopeptid | 99.59 | |
| 3els_A | 158 | PRE-mRNA leakage protein 1; intrinsically unstruct | 99.59 | |
| 1g3g_A | 164 | Protien kinase SPK1; FHA domain, RAD53, phosphopep | 99.58 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 99.56 | |
| 3elv_A | 205 | PRE-mRNA leakage protein 1; intrinsically unstruct | 99.54 | |
| 4ejq_A | 154 | Kinesin-like protein KIF1A; homodimer, FHA domain, | 99.48 | |
| 3fm8_A | 124 | Kinesin-like protein KIF13B; kinesin, GAP, GTPase | 99.43 | |
| 3huf_A | 325 | DNA repair and telomere maintenance protein NBS1; | 99.32 | |
| 4a0e_A | 123 | YSCD, type III secretion protein; transport protei | 99.12 | |
| 3i6u_A | 419 | CDS1, serine/threonine-protein kinase CHK2; Ser/Th | 99.08 | |
| 3uv0_A | 102 | Mutator 2, isoform B; FHA, protein binding, dimeri | 99.02 | |
| 3kt9_A | 102 | Aprataxin; FHA domain, beta sandwich, beta sheet, | 98.97 | |
| 4egx_A | 184 | Kinesin-like protein KIF1A; FHA domain, transport | 98.77 | |
| 1wv3_A | 238 | Similar to DNA segregation ATPase and related prot | 98.66 | |
| 2brf_A | 110 | Bifunctional polynucleotide phosphatase/kinase; hy | 98.51 | |
| 1yj5_C | 143 | 5' polynucleotide kinase-3' phosphatase FHA domai; | 98.29 | |
| 1ujx_A | 119 | Polynucleotide kinase 3'-phosphatase; DNA repair, | 98.17 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 94.65 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 93.67 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 93.41 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 92.91 | |
| 2fxo_A | 129 | Myosin heavy chain, cardiac muscle beta isoform; c | 90.72 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 90.5 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 90.24 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 89.98 | |
| 2v4h_A | 110 | NF-kappa-B essential modulator; transcription, met | 89.86 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 89.33 | |
| 2v71_A | 189 | Nuclear distribution protein NUDE-like 1; developm | 88.31 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 88.13 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 88.12 | |
| 3o0z_A | 168 | RHO-associated protein kinase 1; coiled-coil, tran | 86.82 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 86.17 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 85.03 | |
| 3u59_A | 101 | Tropomyosin beta chain; muscle contraction, actin, | 84.81 | |
| 1ic2_A | 81 | Tropomyosin alpha chain, skeletal muscle; alpha-he | 84.43 |
| >3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=152.12 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=79.6
Q ss_pred cCCCCCCcceEEEEcccCCCCCeEEEcCCCCcCCCC-CCceeeCCccccccceEEEEE-CCEEEEEECCCCCceeeCCEe
Q psy588 10 RPNSHPFAERKLILENTANKNAAVKIGRCIARAKVA-PSNGIFDCKVLSRNHALIWYY-NGKFYLQDTKSSNGTFVNNQR 87 (903)
Q Consensus 10 ~p~ShPf~~RtL~L~sGp~~G~~VtIGRssdrgrps-~cDIVLdDpvVSR~HAeI~~e-dG~~yIrDLGSTNGTFVNGqR 87 (903)
...++|..++.+.+.. +..++|||+ . .|+++++++.|||.||.|.+. ++.|+|+|++|+|||||||++
T Consensus 8 ~v~~G~~~g~~~~l~~----~~~~~iGR~------~~~~di~l~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vng~~ 77 (106)
T 3gqs_A 8 KVLAGANIGAEFHLDS----GKTYIVGSD------PQVADIVLSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRK 77 (106)
T ss_dssp EECC-CCTTCEEEECT----TCEEEEESC------TTTCSEECCCTTSCSSCEEEEECTTSCEEEEECSCSSCCEETTEE
T ss_pred EEEeCCCCcEEEEECC----CCEEEEeEC------CCcCCEEeCCCCcchhhcEEEECCCCcEEEEECcCCCCeEECCEE
Confidence 3345677788888886 346899998 5 699999999999999999998 788999999999999999999
Q ss_pred cCCCCCCCCCeecCCCCEEEEcCceeeec
Q psy588 88 LSKTNEESAPHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 88 Ls~g~~eSePveL~dGDIIrLG~tVLr~~ 116 (903)
+.+ ++.|++||+|+||.+.+.+.
T Consensus 78 i~~------~~~L~~Gd~i~~G~~~~~~~ 100 (106)
T 3gqs_A 78 IEH------QSTLSANQVVALGTTLFLLV 100 (106)
T ss_dssp CSS------EEECCTTCCEEETTEEEEEE
T ss_pred CCC------CeECCCCCEEEECCEEEEEE
Confidence 986 57999999999999998875
|
| >3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A | Back alignment and structure |
|---|
| >2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
| >1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* | Back alignment and structure |
|---|
| >1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 | Back alignment and structure |
|---|
| >1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A | Back alignment and structure |
|---|
| >3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B | Back alignment and structure |
|---|
| >2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A | Back alignment and structure |
|---|
| >1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* | Back alignment and structure |
|---|
| >2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A | Back alignment and structure |
|---|
| >2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* | Back alignment and structure |
|---|
| >1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 | Back alignment and structure |
|---|
| >3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 | Back alignment and structure |
|---|
| >1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 | Back alignment and structure |
|---|
| >3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} | Back alignment and structure |
|---|
| >2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 | Back alignment and structure |
|---|
| >2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 | Back alignment and structure |
|---|
| >1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 | Back alignment and structure |
|---|
| >3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* | Back alignment and structure |
|---|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
| >3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A | Back alignment and structure |
|---|
| >4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A | Back alignment and structure |
|---|
| >3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* | Back alignment and structure |
|---|
| >3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* | Back alignment and structure |
|---|
| >4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A | Back alignment and structure |
|---|
| >3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A | Back alignment and structure |
|---|
| >3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 | Back alignment and structure |
|---|
| >4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 | Back alignment and structure |
|---|
| >2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* | Back alignment and structure |
|---|
| >1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 | Back alignment and structure |
|---|
| >1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} | Back alignment and structure |
|---|
| >1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 903 | ||||
| d1uhta_ | 118 | b.26.1.2 (A:) FHA domain containing protein At4G14 | 3e-13 | |
| d1g6ga_ | 127 | b.26.1.2 (A:) Phosphotyrosine binding domain of Ra | 1e-11 | |
| d1mzka_ | 122 | b.26.1.2 (A:) Kinase associated protein phosphatas | 3e-11 | |
| d2piea1 | 127 | b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 | 7e-09 | |
| d2ff4a3 | 99 | b.26.1.2 (A:284-382) Probable regulatory protein E | 1e-08 | |
| d1gxca_ | 116 | b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T | 7e-08 | |
| d2affa1 | 98 | b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapi | 6e-07 | |
| d1lgpa_ | 113 | b.26.1.2 (A:) Cell cycle checkpoint protein Chfr { | 3e-05 | |
| d1wlna1 | 107 | b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [T | 9e-05 | |
| d2g1la1 | 102 | b.26.1.2 (A:498-599) Kinesin-like protein kif1c {H | 1e-04 | |
| d1dmza_ | 158 | b.26.1.2 (A:) Phosphotyrosine binding domain of Ra | 3e-04 |
| >d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: SMAD/FHA domain superfamily: SMAD/FHA domain family: FHA domain domain: FHA domain containing protein At4G14490 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 65.0 bits (158), Expect = 3e-13
Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 15/107 (14%)
Query: 4 TAILTCRPNSHPFAERKLILENTANKNAAVKIGRCIARAKVAPSNGI-FDCKVLSRNHAL 62
T L P L + + +++GR + N I +S H
Sbjct: 10 TPSLRLVFVKGPREGDALDYKPGST----IRVGR------IVRGNEIAIKDAGISTKHLR 59
Query: 63 IWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESAPHELCSGDVVQFG 109
I +G + +QD SSNGT +N+ L L GDV++ G
Sbjct: 60 IESDSGNWVIQDLGSSNGTLLNSNALDPET----SVNLGDGDVIKLG 102
|
| >d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 | Back information, alignment and structure |
|---|
| >d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 | Back information, alignment and structure |
|---|
| >d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 | Back information, alignment and structure |
|---|
| >d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99 | Back information, alignment and structure |
|---|
| >d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 | Back information, alignment and structure |
|---|
| >d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
| >d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
| >d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 | Back information, alignment and structure |
|---|
| >d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
| >d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 903 | |||
| d2ff4a3 | 99 | Probable regulatory protein EmbR, C-terminal domai | 99.73 | |
| d1mzka_ | 122 | Kinase associated protein phosphatase {Thale cress | 99.73 | |
| d1uhta_ | 118 | FHA domain containing protein At4G14490 {Thale cre | 99.72 | |
| d2affa1 | 98 | Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1lgpa_ | 113 | Cell cycle checkpoint protein Chfr {Human (Homo sa | 99.6 | |
| d1g6ga_ | 127 | Phosphotyrosine binding domain of Rad53 {Baker's y | 99.58 | |
| d2piea1 | 127 | Ubiquitin ligase protein RNF8 {Human (Homo sapiens | 99.57 | |
| d1gxca_ | 116 | Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1dmza_ | 158 | Phosphotyrosine binding domain of Rad53 {Baker's y | 99.53 | |
| d2brfa1 | 101 | Polynucleotide kinase 3'-phosphatase {Human (Homo | 99.49 | |
| d1wlna1 | 107 | Afadin {Mouse (Mus musculus) [TaxId: 10090]} | 99.49 | |
| d2g1la1 | 102 | Kinesin-like protein kif1c {Human (Homo sapiens) [ | 99.43 |
| >d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: SMAD/FHA domain superfamily: SMAD/FHA domain family: FHA domain domain: Probable regulatory protein EmbR, C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=2.7e-18 Score=151.36 Aligned_cols=83 Identities=27% Similarity=0.399 Sum_probs=74.7
Q ss_pred cceEEEEcccCCCCCeEEEcCCCCcCCCCCCceeeCCccccccceEEEEECCEEEEEECCCCCceeeCCEecCCCCCCCC
Q psy588 17 AERKLILENTANKNAAVKIGRCIARAKVAPSNGIFDCKVLSRNHALIWYYNGKFYLQDTKSSNGTFVNNQRLSKTNEESA 96 (903)
Q Consensus 17 ~~RtL~L~sGp~~G~~VtIGRssdrgrps~cDIVLdDpvVSR~HAeI~~edG~~yIrDLGSTNGTFVNGqRLs~g~~eSe 96 (903)
.++.+++..+ .++|||+ ..|+++++++.|||.||.|.+.++.|+|+|++|+|||||||+++..
T Consensus 14 ~G~~~~l~~~-----~~~IGR~------~~~di~l~d~~VSr~Ha~i~~~~~~~~i~Dl~S~nGt~vNg~~i~~------ 76 (99)
T d2ff4a3 14 SGRGYPLQAA-----ATRIGRL------HDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRS------ 76 (99)
T ss_dssp TCCEEECCSS-----EEEEESS------TTSSEECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEETTEECSS------
T ss_pred CCCEEEECCC-----CEEEeeC------cCCCEEECCccccceeEEEEEeCCEEEEEECCCcCCCeECCEEcCC------
Confidence 3466777653 7999998 7899999999999999999999999999999999999999999965
Q ss_pred CeecCCCCEEEEcCceeeec
Q psy588 97 PHELCSGDVVQFGVDVIETN 116 (903)
Q Consensus 97 PveL~dGDIIrLG~tVLr~~ 116 (903)
+++|++||+|+||.+.+++.
T Consensus 77 ~~~L~~Gd~i~iG~~~~~f~ 96 (99)
T d2ff4a3 77 AVTLNDGDHIRICDHEFTFQ 96 (99)
T ss_dssp EEEECTTCEEEETTEEEEEE
T ss_pred ceECCCCCEEEECCEEEEEE
Confidence 58999999999999988875
|
| >d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|