Psyllid ID: psy5925
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 696 | 2.2.26 [Sep-21-2011] | |||||||
| Q61493 | 3122 | DNA polymerase zeta catal | yes | N/A | 0.655 | 0.146 | 0.442 | 1e-119 | |
| O60673 | 3130 | DNA polymerase zeta catal | yes | N/A | 0.646 | 0.143 | 0.436 | 1e-118 | |
| P14284 | 1504 | DNA polymerase zeta catal | yes | N/A | 0.564 | 0.261 | 0.360 | 5e-67 | |
| Q9P6L6 | 1480 | DNA polymerase zeta catal | yes | N/A | 0.459 | 0.216 | 0.396 | 6e-64 | |
| Q9LVN7 | 1095 | DNA polymerase delta cata | no | N/A | 0.492 | 0.313 | 0.287 | 1e-30 | |
| P90829 | 1081 | DNA polymerase delta cata | no | N/A | 0.412 | 0.265 | 0.303 | 1e-29 | |
| Q9LRE6 | 1105 | DNA polymerase delta cata | yes | N/A | 0.492 | 0.310 | 0.29 | 2e-29 | |
| P46588 | 1038 | DNA polymerase delta cata | N/A | N/A | 0.422 | 0.283 | 0.282 | 3e-28 | |
| O48901 | 1088 | DNA polymerase delta cata | no | N/A | 0.485 | 0.310 | 0.291 | 7e-28 | |
| P54358 | 1092 | DNA polymerase delta cata | no | N/A | 0.491 | 0.313 | 0.271 | 4e-27 |
| >sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/500 (44%), Positives = 335/500 (67%), Gaps = 44/500 (8%)
Query: 202 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 261
+ TPK+ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2249 VNTPKK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQ 2305
Query: 262 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKEL 317
PDP +D + A+FY + + P E+ G+I+I ++ +
Sbjct: 2306 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTH----------------- 2348
Query: 318 FSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGY 377
+++R P +LI I LE + ++EK LF ++++DPDIL+GY
Sbjct: 2349 -----QDIRSQTP-LLIRSGITG------LEVTYAADEKALFQEITNIIKRYDPDILLGY 2396
Query: 378 EIETLSWGYLLERGYVLGLNLNQELSRITE--VEKR-NSSRDEVKN---TQLQMPGRIVI 431
EI+ SWGYLL+R L ++L Q +SR+ + +E R + RD+ + +++ + GRI +
Sbjct: 2397 EIQMHSWGYLLQRAAALSVDLCQMISRVPDDKIENRFAAERDDYGSDTMSEINIVGRITL 2456
Query: 432 NLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRV 491
NLWR++R+EV L +YTFEN+ +HVLH+R PL ++++L+ W++++T LY+W V+HY+ RV
Sbjct: 2457 NLWRIMRNEVALTNYTFENVSFHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYVSRV 2516
Query: 492 TGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIK 551
G ++++EQLD IG+TSEMARLFGIQF VL+RGSQ+RVES+MLR+++ N++ V+PSI+
Sbjct: 2517 RGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSIQ 2576
Query: 552 QRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSD 611
QR+ MRAP+ +PLI+EPESR Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D
Sbjct: 2577 QRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYD 2636
Query: 612 SFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSM 671
F FGC L V L +++ ++T+SP+GVAFV S+R G+LP+ML+EIL TRLMVKQSM
Sbjct: 2637 EFKFGCTSLRVPPDLLYQIRHDVTVSPNGVAFVKPSVRKGVLPRMLEEILKTRLMVKQSM 2696
Query: 672 KEYKFSESLRNLTMLNSMLL 691
K YK +L MLN+ L
Sbjct: 2697 KSYKQDRALSR--MLNARQL 2714
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Interacts with MAD2L2 to form the error prone DNA polymerase zeta involved in translesion DNA synthesis. Mus musculus (taxid: 10090) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7 |
| >sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1 SV=2 | Back alignment and function description |
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| >sp|P14284|DPOZ_YEAST DNA polymerase zeta catalytic subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REV3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana GN=POLD1 PE=2 SV=2 | Back alignment and function description |
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| >sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans GN=F10C2.4 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp. japonica GN=POLD1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3 PE=3 SV=2 | Back alignment and function description |
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| >sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster GN=DNApol-delta PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 696 | ||||||
| 157124378 | 2080 | DNA polymerase zeta catalytic subunit [A | 0.636 | 0.212 | 0.491 | 1e-122 | |
| 328718109 | 1485 | PREDICTED: DNA polymerase zeta catalytic | 0.579 | 0.271 | 0.492 | 1e-122 | |
| 347965478 | 2191 | AGAP013386-PA [Anopheles gambiae str. PE | 0.633 | 0.201 | 0.486 | 1e-121 | |
| 242006490 | 2605 | DNA polymerase zeta catalytic subunit, p | 0.626 | 0.167 | 0.477 | 1e-121 | |
| 170055192 | 1959 | DNA polymerase zeta catalytic subunit [C | 0.614 | 0.218 | 0.485 | 1e-119 | |
| 395534778 | 3136 | PREDICTED: DNA polymerase zeta catalytic | 0.655 | 0.145 | 0.448 | 1e-119 | |
| 334324484 | 3156 | PREDICTED: LOW QUALITY PROTEIN: DNA poly | 0.655 | 0.144 | 0.448 | 1e-118 | |
| 403289777 | 3052 | PREDICTED: DNA polymerase zeta catalytic | 0.655 | 0.149 | 0.446 | 1e-118 | |
| 291396775 | 3128 | PREDICTED: DNA polymerase zeta [Oryctola | 0.655 | 0.145 | 0.442 | 1e-118 | |
| 4079831 | 3122 | DNA polymerase zeta catalytic subunit [M | 0.655 | 0.146 | 0.442 | 1e-117 |
| >gi|157124378|ref|XP_001660448.1| DNA polymerase zeta catalytic subunit [Aedes aegypti] gi|108874011|gb|EAT38236.1| AAEL009851-PA [Aedes aegypti] | Back alignment and taxonomy information |
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Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 243/494 (49%), Positives = 323/494 (65%), Gaps = 51/494 (10%)
Query: 199 RKQLETPKRRIC--DSYAIDAMTPDT-TGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAI 255
RK+ +T K R+ S I A+TP+ T +++ +NL + + E +LT+++VE+H
Sbjct: 1190 RKRRKTMKARLSLKHSGNISAVTPNNNTYGFKVNYENLQKAKATCEYNFLTIMSVEVHIQ 1249
Query: 256 SRALLKPDPAYDEVKAIFYYLYTCPPEEDRKV----GIILIGQESELPEVRTKPIQMNFV 311
+R L+P+P D + AIFY ++ PE+ R+ GIIL + R P + N
Sbjct: 1250 TRGELRPNPEIDPISAIFYRIHNDVPEDHRRAPSVCGIILNHEHGLAATDRLDPYKYN-- 1307
Query: 312 SNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDP 371
Y+ + VSNE+EL+ F+ + WDP
Sbjct: 1308 ------------------------------KCNYMADVVTVSNERELYEKFLMLISFWDP 1337
Query: 372 DILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVK--------NTQL 423
DI GYEIE SWGY+++RGY L +NL + LSR+ EK + S +E + + L
Sbjct: 1338 DIFAGYEIEQASWGYIIQRGYSLEMNLMKMLSRVPTAEKVHVSEEEEQELLEMHEYSAGL 1397
Query: 424 QMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMT 483
++PGRI++++WRL+RHE+ L SYTFENI++H+LH R+ H++K LT W KW+
Sbjct: 1398 KIPGRILLDIWRLMRHEIALTSYTFENIVFHILHRRVSCHAFKQLTRLWN--KPYSKWIV 1455
Query: 484 VEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNF 543
+E+YL RV G + L+ QLD IGRT+E+A+LFGIQFYEVLSRGSQFRVES+MLR+++ NF
Sbjct: 1456 LEYYLERVNGNLELLHQLDLIGRTAELAKLFGIQFYEVLSRGSQFRVESMMLRIAKPRNF 1515
Query: 544 VAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR 603
V+VSPSI+QRAHMRAPE LPLILEPESR Y DP+IVLDFQSLYPS+IIAYNYCFSTCLGR
Sbjct: 1516 VSVSPSIQQRAHMRAPEYLPLILEPESRFYADPLIVLDFQSLYPSMIIAYNYCFSTCLGR 1575
Query: 604 VEHLGVSDSFPFGCIDLNVSIRSLKKL-QQNL-TISPSGVAFVDKSIRCGILPKMLQEIL 661
VEHLG S+ F FG L +S R LK L ++NL TISP G+AFV S+R GILP+ML EIL
Sbjct: 1576 VEHLGQSEPFEFGASHLRLSPRMLKVLVEKNLITISPCGIAFVKSSVREGILPRMLNEIL 1635
Query: 662 DTRLMVKQSMKEYK 675
TRLMVK SMK +K
Sbjct: 1636 TTRLMVKGSMKLHK 1649
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Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328718109|ref|XP_001949189.2| PREDICTED: DNA polymerase zeta catalytic subunit-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|347965478|ref|XP_003435770.1| AGAP013386-PA [Anopheles gambiae str. PEST] gi|333470492|gb|EGK97643.1| AGAP013386-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
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| >gi|242006490|ref|XP_002424083.1| DNA polymerase zeta catalytic subunit, putative [Pediculus humanus corporis] gi|212507389|gb|EEB11345.1| DNA polymerase zeta catalytic subunit, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|170055192|ref|XP_001863472.1| DNA polymerase zeta catalytic subunit [Culex quinquefasciatus] gi|167875216|gb|EDS38599.1| DNA polymerase zeta catalytic subunit [Culex quinquefasciatus] | Back alignment and taxonomy information |
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| >gi|395534778|ref|XP_003769414.1| PREDICTED: DNA polymerase zeta catalytic subunit [Sarcophilus harrisii] | Back alignment and taxonomy information |
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| >gi|334324484|ref|XP_003340527.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit-like [Monodelphis domestica] | Back alignment and taxonomy information |
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| >gi|403289777|ref|XP_003936019.1| PREDICTED: DNA polymerase zeta catalytic subunit [Saimiri boliviensis boliviensis] | Back alignment and taxonomy information |
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| >gi|291396775|ref|XP_002714966.1| PREDICTED: DNA polymerase zeta [Oryctolagus cuniculus] | Back alignment and taxonomy information |
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| >gi|4079831|gb|AAC98785.1| DNA polymerase zeta catalytic subunit [Mus musculus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 696 | ||||||
| MGI|MGI:1337131 | 3122 | Rev3l "REV3-like, catalytic su | 0.492 | 0.109 | 0.529 | 1.4e-117 | |
| UNIPROTKB|F1NQT0 | 3100 | REV3L "DNA polymerase" [Gallus | 0.484 | 0.108 | 0.516 | 5.5e-116 | |
| UNIPROTKB|F1LMP6 | 3118 | Rev3l "DNA polymerase" [Rattus | 0.492 | 0.110 | 0.518 | 9.1e-116 | |
| UNIPROTKB|F1M8G6 | 3132 | Rev3l "DNA polymerase" [Rattus | 0.492 | 0.109 | 0.518 | 9.2e-116 | |
| ZFIN|ZDB-GENE-050302-55 | 2953 | rev3l "REV3-like, catalytic su | 0.475 | 0.112 | 0.516 | 1.8e-112 | |
| UNIPROTKB|F1P7E8 | 3058 | REV3L "DNA polymerase" [Canis | 0.564 | 0.128 | 0.474 | 8e-99 | |
| UNIPROTKB|F1P7D5 | 3136 | REV3L "DNA polymerase" [Canis | 0.564 | 0.125 | 0.474 | 9.1e-99 | |
| UNIPROTKB|E1BPY8 | 3133 | REV3L "DNA polymerase" [Bos ta | 0.553 | 0.122 | 0.478 | 8.1e-98 | |
| UNIPROTKB|O60673 | 3130 | REV3L "DNA polymerase zeta cat | 0.564 | 0.125 | 0.476 | 1.7e-97 | |
| FB|FBgn0002891 | 2130 | mus205 "mutagen-sensitive 205" | 0.481 | 0.157 | 0.543 | 6.1e-96 |
| MGI|MGI:1337131 Rev3l "REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Score = 987 (352.5 bits), Expect = 1.4e-117, Sum P(2) = 1.4e-117
Identities = 186/351 (52%), Positives = 269/351 (76%)
Query: 347 LERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 406
LE + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2366 LEVTYAADEKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2425
Query: 407 E--VEKRNSS-RDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 460
+ +E R ++ RD+ + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2426 DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2485
Query: 461 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 520
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2486 PLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2545
Query: 521 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 580
VL+RGSQ+RVES+MLR+++ N++ V+PSI+QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2546 VLTRGSQYRVESMMLRIAKPMNYIPVTPSIQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2605
Query: 581 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSG 640
DFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++ ++T+SP+G
Sbjct: 2606 DFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQIRHDVTVSPNG 2665
Query: 641 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
VAFV S+R G+LP+ML+EIL TRLMVKQSMK YK +L MLN+ L
Sbjct: 2666 VAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKSYKQDRALSR--MLNARQL 2714
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| UNIPROTKB|F1NQT0 REV3L "DNA polymerase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1LMP6 Rev3l "DNA polymerase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1M8G6 Rev3l "DNA polymerase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-050302-55 rev3l "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P7E8 REV3L "DNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P7D5 REV3L "DNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BPY8 REV3L "DNA polymerase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O60673 REV3L "DNA polymerase zeta catalytic subunit" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| FB|FBgn0002891 mus205 "mutagen-sensitive 205" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.691 |
| 4th Layer | 2.7.7.7 | 0.737 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 696 | |||
| cd05534 | 451 | cd05534, POLBc_zeta, DNA polymerase type-B zeta su | 8e-76 | |
| cd05778 | 231 | cd05778, DNA_polB_zeta_exo, inactive DEDDy 3'-5' e | 7e-62 | |
| smart00486 | 474 | smart00486, POLBc, DNA polymerase type-B family | 2e-50 | |
| COG0417 | 792 | COG0417, PolB, DNA polymerase elongation subunit ( | 1e-39 | |
| PTZ00166 | 1054 | PTZ00166, PTZ00166, DNA polymerase delta catalytic | 6e-38 | |
| PRK05762 | 786 | PRK05762, PRK05762, DNA polymerase II; Reviewed | 4e-23 | |
| pfam00136 | 458 | pfam00136, DNA_pol_B, DNA polymerase family B | 2e-22 | |
| pfam13901 | 202 | pfam13901, DUF4206, Domain of unknown function (DU | 2e-21 | |
| cd05534 | 451 | cd05534, POLBc_zeta, DNA polymerase type-B zeta su | 8e-21 | |
| cd05160 | 199 | cd05160, DEDDy_DNA_polB_exo, DEDDy 3'-5' exonuclea | 1e-20 | |
| cd00145 | 323 | cd00145, POLBc, DNA polymerase type-B family catal | 5e-18 | |
| cd05533 | 393 | cd05533, POLBc_delta, DNA polymerase type-B delta | 2e-16 | |
| cd05532 | 400 | cd05532, POLBc_alpha, DNA polymerase type-B alpha | 2e-13 | |
| pfam03104 | 254 | pfam03104, DNA_pol_B_exo1, DNA polymerase family B | 8e-13 | |
| TIGR00592 | 1172 | TIGR00592, pol2, DNA polymerase (pol2) | 3e-12 | |
| cd05777 | 230 | cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclea | 6e-12 | |
| cd05780 | 195 | cd05780, DNA_polB_Kod1_like_exo, DEDDy 3'-5' exonu | 2e-10 | |
| cd00145 | 323 | cd00145, POLBc, DNA polymerase type-B family catal | 4e-09 | |
| pfam00136 | 458 | pfam00136, DNA_pol_B, DNA polymerase family B | 7e-09 | |
| PHA02528 | 881 | PHA02528, 43, DNA polymerase; Provisional | 1e-08 | |
| cd05532 | 400 | cd05532, POLBc_alpha, DNA polymerase type-B alpha | 9e-08 | |
| cd05533 | 393 | cd05533, POLBc_delta, DNA polymerase type-B delta | 1e-07 | |
| PTZ00166 | 1054 | PTZ00166, PTZ00166, DNA polymerase delta catalytic | 2e-07 | |
| smart00486 | 474 | smart00486, POLBc, DNA polymerase type-B family | 3e-07 | |
| cd05781 | 188 | cd05781, DNA_polB_B3_exo, DEDDy 3'-5' exonuclease | 4e-07 | |
| COG0417 | 792 | COG0417, PolB, DNA polymerase elongation subunit ( | 2e-06 | |
| cd05781 | 188 | cd05781, DNA_polB_B3_exo, DEDDy 3'-5' exonuclease | 5e-06 | |
| cd05776 | 234 | cd05776, DNA_polB_alpha_exo, inactive DEDDy 3'-5' | 5e-05 | |
| cd05536 | 371 | cd05536, POLBc_B3, DNA polymerase type-B B3 subfam | 8e-05 | |
| cd05784 | 193 | cd05784, DNA_polB_II_exo, DEDDy 3'-5' exonuclease | 1e-04 | |
| cd05784 | 193 | cd05784, DNA_polB_II_exo, DEDDy 3'-5' exonuclease | 1e-04 | |
| PRK05762 | 786 | PRK05762, PRK05762, DNA polymerase II; Reviewed | 2e-04 | |
| PRK05761 | 787 | PRK05761, PRK05761, DNA polymerase I; Reviewed | 8e-04 | |
| cd05530 | 372 | cd05530, POLBc_B1, DNA polymerase type-B B1 subfam | 0.002 |
| >gnl|CDD|99917 cd05534, POLBc_zeta, DNA polymerase type-B zeta subfamily catalytic domain | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 8e-76
Identities = 92/153 (60%), Positives = 117/153 (76%), Gaps = 2/153 (1%)
Query: 525 GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQS 584
GSQFRVES++LRL++ N++ SPS +Q A RA E LPL++EPES Y+DP+IVLDFQS
Sbjct: 1 GSQFRVESMLLRLAKPENYILPSPSRQQVAQQRALECLPLVMEPESGFYSDPVIVLDFQS 60
Query: 585 LYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ--NLTISPSGVA 642
LYPS++IAYNYC+STCLGRVE L F F + L + L L ++TISP+GV
Sbjct: 61 LYPSIMIAYNYCYSTCLGRVEELNGGGKFGFLGVKLYLPPPPLDLLLLKDDVTISPNGVM 120
Query: 643 FVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
FV KS+R GILPKML+EILDTR+MVK++MK+YK
Sbjct: 121 FVKKSVRKGILPKMLEEILDTRIMVKKAMKKYK 153
|
DNA polymerase (Pol) zeta is a member of the eukaryotic B-family of DNA polymerases and distantly related to DNA Pol delta. Pol zeta plays a major role in translesion replication and the production of either spontaneous or induced mutations. Apart from its role in translesion replication, Pol zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. Length = 451 |
| >gnl|CDD|99821 cd05778, DNA_polB_zeta_exo, inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|214691 smart00486, POLBc, DNA polymerase type-B family | Back alignment and domain information |
|---|
| >gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235595 PRK05762, PRK05762, DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|215742 pfam00136, DNA_pol_B, DNA polymerase family B | Back alignment and domain information |
|---|
| >gnl|CDD|222444 pfam13901, DUF4206, Domain of unknown function (DUF4206) | Back alignment and domain information |
|---|
| >gnl|CDD|99917 cd05534, POLBc_zeta, DNA polymerase type-B zeta subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|176646 cd05160, DEDDy_DNA_polB_exo, DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|99912 cd00145, POLBc, DNA polymerase type-B family catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|99916 cd05533, POLBc_delta, DNA polymerase type-B delta subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|99915 cd05532, POLBc_alpha, DNA polymerase type-B alpha subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|217371 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease domain | Back alignment and domain information |
|---|
| >gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >gnl|CDD|99820 cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|99823 cd05780, DNA_polB_Kod1_like_exo, DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|99912 cd00145, POLBc, DNA polymerase type-B family catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|215742 pfam00136, DNA_pol_B, DNA polymerase family B | Back alignment and domain information |
|---|
| >gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99915 cd05532, POLBc_alpha, DNA polymerase type-B alpha subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|99916 cd05533, POLBc_delta, DNA polymerase type-B delta subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|214691 smart00486, POLBc, DNA polymerase type-B family | Back alignment and domain information |
|---|
| >gnl|CDD|99824 cd05781, DNA_polB_B3_exo, DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|99824 cd05781, DNA_polB_B3_exo, DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|99819 cd05776, DNA_polB_alpha_exo, inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|99919 cd05536, POLBc_B3, DNA polymerase type-B B3 subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|99827 cd05784, DNA_polB_II_exo, DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|99827 cd05784, DNA_polB_II_exo, DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|235595 PRK05762, PRK05762, DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|99913 cd05530, POLBc_B1, DNA polymerase type-B B1 subfamily catalytic domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 696 | |||
| KOG0968|consensus | 1488 | 100.0 | ||
| PTZ00166 | 1054 | DNA polymerase delta catalytic subunit; Provisiona | 100.0 | |
| KOG0969|consensus | 1066 | 100.0 | ||
| KOG0970|consensus | 1429 | 100.0 | ||
| PHA02528 | 881 | 43 DNA polymerase; Provisional | 100.0 | |
| PHA02524 | 498 | 43A DNA polymerase subunit A; Provisional | 100.0 | |
| TIGR00592 | 1172 | pol2 DNA polymerase (pol2). This family is based o | 100.0 | |
| PHA03036 | 1004 | DNA polymerase; Provisional | 100.0 | |
| PRK05762 | 786 | DNA polymerase II; Reviewed | 100.0 | |
| smart00486 | 471 | POLBc DNA polymerase type-B family. DNA polymerase | 100.0 | |
| COG0417 | 792 | PolB DNA polymerase elongation subunit (family B) | 100.0 | |
| PRK05761 | 787 | DNA polymerase I; Reviewed | 100.0 | |
| PHA03334 | 1545 | putative DNA polymerase catalytic subunit; Provisi | 100.0 | |
| cd05778 | 231 | DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease | 100.0 | |
| cd05777 | 230 | DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain | 100.0 | |
| cd05776 | 234 | DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas | 100.0 | |
| cd05534 | 451 | POLBc_zeta DNA polymerase type-B zeta subfamily ca | 100.0 | |
| KOG1798|consensus | 2173 | 100.0 | ||
| cd05780 | 195 | DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom | 100.0 | |
| cd05779 | 204 | DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai | 99.97 | |
| cd05781 | 188 | DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of | 99.97 | |
| TIGR00592 | 1172 | pol2 DNA polymerase (pol2). This family is based o | 99.97 | |
| cd05784 | 193 | DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of | 99.97 | |
| cd05785 | 207 | DNA_polB_like2_exo Uncharacterized bacterial subgr | 99.97 | |
| cd05160 | 199 | DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain | 99.96 | |
| PF03104 | 325 | DNA_pol_B_exo1: DNA polymerase family B, exonuclea | 99.95 | |
| cd05783 | 204 | DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of | 99.95 | |
| PF00136 | 466 | DNA_pol_B: DNA polymerase family B Several related | 99.95 | |
| cd05533 | 393 | POLBc_delta DNA polymerase type-B delta subfamily | 99.94 | |
| cd05536 | 371 | POLBc_B3 DNA polymerase type-B B3 subfamily cataly | 99.91 | |
| cd05532 | 400 | POLBc_alpha DNA polymerase type-B alpha subfamily | 99.9 | |
| cd00145 | 323 | POLBc DNA polymerase type-B family catalytic domai | 99.9 | |
| KOG0969|consensus | 1066 | 99.89 | ||
| cd05530 | 372 | POLBc_B1 DNA polymerase type-B B1 subfamily cataly | 99.88 | |
| cd05531 | 352 | POLBc_B2 DNA polymerase type-B B2 subfamily cataly | 99.88 | |
| cd05537 | 371 | POLBc_Pol_II DNA polymerase type-II subfamily cata | 99.86 | |
| KOG0968|consensus | 1488 | 99.86 | ||
| cd05782 | 208 | DNA_polB_like1_exo Uncharacterized bacterial subgr | 99.84 | |
| PTZ00166 | 1054 | DNA polymerase delta catalytic subunit; Provisiona | 99.79 | |
| cd05538 | 347 | POLBc_Pol_II_B DNA polymerase type-II B subfamily | 99.78 | |
| cd05534 | 451 | POLBc_zeta DNA polymerase type-B zeta subfamily ca | 99.78 | |
| PHA03036 | 1004 | DNA polymerase; Provisional | 99.77 | |
| PHA03334 | 1545 | putative DNA polymerase catalytic subunit; Provisi | 99.71 | |
| PHA02524 | 498 | 43A DNA polymerase subunit A; Provisional | 99.69 | |
| cd05533 | 393 | POLBc_delta DNA polymerase type-B delta subfamily | 99.59 | |
| PF00136 | 466 | DNA_pol_B: DNA polymerase family B Several related | 99.58 | |
| PRK05761 | 787 | DNA polymerase I; Reviewed | 99.58 | |
| PHA02528 | 881 | 43 DNA polymerase; Provisional | 99.58 | |
| COG0417 | 792 | PolB DNA polymerase elongation subunit (family B) | 99.49 | |
| PF10108 | 209 | DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate | 99.49 | |
| KOG0970|consensus | 1429 | 99.49 | ||
| PRK05762 | 786 | DNA polymerase II; Reviewed | 99.47 | |
| KOG1829|consensus | 580 | 99.46 | ||
| cd05532 | 400 | POLBc_alpha DNA polymerase type-B alpha subfamily | 99.44 | |
| cd00145 | 323 | POLBc DNA polymerase type-B family catalytic domai | 99.43 | |
| cd05530 | 372 | POLBc_B1 DNA polymerase type-B B1 subfamily cataly | 99.37 | |
| smart00486 | 471 | POLBc DNA polymerase type-B family. DNA polymerase | 99.29 | |
| cd05536 | 371 | POLBc_B3 DNA polymerase type-B B3 subfamily cataly | 99.27 | |
| cd05537 | 371 | POLBc_Pol_II DNA polymerase type-II subfamily cata | 99.27 | |
| cd05531 | 352 | POLBc_B2 DNA polymerase type-B B2 subfamily cataly | 99.23 | |
| PF13482 | 164 | RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A | 98.78 | |
| cd05538 | 347 | POLBc_Pol_II_B DNA polymerase type-II B subfamily | 98.78 | |
| PHA02563 | 630 | DNA polymerase; Provisional | 98.65 | |
| COG3359 | 278 | Predicted exonuclease [DNA replication, recombinat | 98.29 | |
| PRK06309 | 232 | DNA polymerase III subunit epsilon; Validated | 97.69 | |
| PRK06310 | 250 | DNA polymerase III subunit epsilon; Validated | 97.67 | |
| PHA02735 | 716 | putative DNA polymerase type B; Provisional | 97.67 | |
| PRK08517 | 257 | DNA polymerase III subunit epsilon; Provisional | 97.51 | |
| cd06136 | 177 | TREX1_2 DEDDh 3'-5' exonuclease domain of three pr | 97.49 | |
| PRK05601 | 377 | DNA polymerase III subunit epsilon; Validated | 97.45 | |
| PRK06807 | 313 | DNA polymerase III subunit epsilon; Validated | 97.44 | |
| PF03175 | 459 | DNA_pol_B_2: DNA polymerase type B, organellar and | 97.4 | |
| smart00479 | 169 | EXOIII exonuclease domain in DNA-polymerase alpha | 97.38 | |
| PRK07883 | 557 | hypothetical protein; Validated | 97.34 | |
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 97.32 | |
| PRK06063 | 313 | DNA polymerase III subunit epsilon; Provisional | 97.31 | |
| TIGR03491 | 457 | RecB family nuclease, putative, TM0106 family. Mem | 97.31 | |
| cd06130 | 156 | DNA_pol_III_epsilon_like an uncharacterized bacter | 97.28 | |
| cd06131 | 167 | DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl | 97.23 | |
| PRK09146 | 239 | DNA polymerase III subunit epsilon; Validated | 97.23 | |
| PRK07740 | 244 | hypothetical protein; Provisional | 97.21 | |
| PRK07942 | 232 | DNA polymerase III subunit epsilon; Provisional | 97.19 | |
| TIGR01406 | 225 | dnaQ_proteo DNA polymerase III, epsilon subunit, P | 97.09 | |
| TIGR01405 | 1213 | polC_Gram_pos DNA polymerase III, alpha chain, Gra | 97.06 | |
| PRK09145 | 202 | DNA polymerase III subunit epsilon; Validated | 97.05 | |
| PRK05711 | 240 | DNA polymerase III subunit epsilon; Provisional | 96.95 | |
| TIGR00573 | 217 | dnaq exonuclease, DNA polymerase III, epsilon subu | 96.93 | |
| cd06127 | 159 | DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh | 96.86 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 96.81 | |
| cd06138 | 183 | ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o | 96.79 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 96.79 | |
| PRK07748 | 207 | sporulation inhibitor KapD; Provisional | 96.78 | |
| PRK05168 | 211 | ribonuclease T; Provisional | 96.76 | |
| cd06134 | 189 | RNaseT DEDDh 3'-5' exonuclease domain of RNase T. | 96.73 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 96.53 | |
| cd06125 | 96 | DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas | 96.34 | |
| PRK06722 | 281 | exonuclease; Provisional | 96.25 | |
| PRK11779 | 476 | sbcB exonuclease I; Provisional | 96.2 | |
| TIGR01298 | 200 | RNaseT ribonuclease T. in gamma-subdivision Proteo | 96.19 | |
| PF14446 | 54 | Prok-RING_1: Prokaryotic RING finger family 1 | 96.17 | |
| PRK07247 | 195 | DNA polymerase III subunit epsilon; Validated | 96.11 | |
| cd06144 | 152 | REX4_like DEDDh 3'-5' exonuclease domain of RNA ex | 96.1 | |
| PF01612 | 176 | DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 | 95.92 | |
| cd06133 | 176 | ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o | 95.9 | |
| cd06149 | 157 | ISG20 DEDDh 3'-5' exonuclease domain of Interferon | 95.16 | |
| cd06137 | 161 | DEDDh_RNase DEDDh 3'-5' exonuclease domain of the | 93.9 | |
| COG2176 | 1444 | PolC DNA polymerase III, alpha subunit (gram-posit | 93.8 | |
| PRK09182 | 294 | DNA polymerase III subunit epsilon; Validated | 93.43 | |
| PRK00448 | 1437 | polC DNA polymerase III PolC; Validated | 93.34 | |
| cd06145 | 150 | REX1_like DEDDh 3'-5' exonuclease domain of RNA ex | 93.11 | |
| COG0847 | 243 | DnaQ DNA polymerase III, epsilon subunit and relat | 92.05 | |
| PRK05359 | 181 | oligoribonuclease; Provisional | 91.62 | |
| PHA02563 | 630 | DNA polymerase; Provisional | 90.06 | |
| cd06146 | 193 | mut-7_like_exo DEDDy 3'-5' exonuclease domain of C | 88.81 | |
| cd06141 | 170 | WRN_exo DEDDy 3'-5' exonuclease domain of WRN and | 87.69 | |
| cd06135 | 173 | Orn DEDDh 3'-5' exonuclease domain of oligoribonuc | 87.42 | |
| PF00628 | 51 | PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( | 86.7 | |
| PRK05755 | 880 | DNA polymerase I; Provisional | 84.9 | |
| PTZ00315 | 582 | 2'-phosphotransferase; Provisional | 84.75 | |
| cd06139 | 193 | DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease | 83.61 | |
| smart00249 | 47 | PHD PHD zinc finger. The plant homeodomain (PHD) f | 82.61 | |
| PF08271 | 43 | TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 | 82.1 | |
| KOG2114|consensus | 933 | 81.21 | ||
| cd06129 | 161 | RNaseD_like DEDDy 3'-5' exonuclease domain of RNas | 80.87 |
| >KOG0968|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-90 Score=776.05 Aligned_cols=444 Identities=41% Similarity=0.703 Sum_probs=405.1
Q ss_pred ccccCCCCCCccccccCCCCcccccccccCCCceEEEEEEEeecCCCCCCCCCCCcEEEEEEEeecCCC-CC---CceEE
Q psy5925 213 YAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPP-EE---DRKVG 288 (696)
Q Consensus 213 ~~I~~~t~~~~~gfk~~~~~~~~~~~~~~~~~LtilsleIe~~sr~~~~Pdp~~D~I~~I~~~~~~~~~-~~---~~~~g 288 (696)
++|++|+.++.|+|+.++.+.++.++....+.||++|+|+|+.||+++-|||..|+|.+|+|+++.|.+ .| ....|
T Consensus 626 s~i~~p~~~s~~~~~~~v~~~q~~~~~~~~~~Lt~lsiElha~sr~dl~PDP~~D~V~~l~~~vq~dtp~pd~~si~~~g 705 (1488)
T KOG0968|consen 626 SQIRGPTAKSVYTFETSVAGAQKSKPVEQTQLLTILSIELHATSRGDLEPDPVFDSVASLFLCVQEDTPMPDADSIVSVG 705 (1488)
T ss_pred hhccCCccccccccchhhhcccccccccccceeeeeeeeccccccCCCCCCcccccchhhhhhhccCCCCCcccceeeee
Confidence 348999999999999999999999999999999999999999999999999999999999999999865 22 23778
Q ss_pred EEEEcCCCCCcccccCccccccccchhhhhhhhhhccccCCCcccccccccccccCcceEEEEeCCHHHHHHHHHHHHHH
Q psy5925 289 IILIGQESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQ 368 (696)
Q Consensus 289 ~ilv~~~~~~~~~~~~p~~~~~~~~~~e~~~~~~~~~~~~~p~~~~g~ei~~~~~~~~~~V~~~~sE~eLL~~f~~~I~~ 368 (696)
+++++...... ... +. +. + | -.+.+|.++.+|++|++++.+++.+
T Consensus 706 v~Vv~~~~~ds-----~~~------------t~---~~--~-----~--------~~~~~V~~~~sE~elf~ev~~~i~q 750 (1488)
T KOG0968|consen 706 VIVVDKVCPDS-----HVQ------------TT---TL--G-----G--------IYGCRVVVMESELELFEEVAKLIVQ 750 (1488)
T ss_pred EEEEeccCccc-----ccc------------cc---cc--C-----C--------cCCceEEEehhHHHHHHHHHHHHHh
Confidence 99987542110 000 00 00 0 1 1367899999999999999999999
Q ss_pred hCCCEEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCC-----ccccceeeecccEEEehHHHHhhhcCC
Q psy5925 369 WDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRD-----EVKNTQLQMPGRIVINLWRLLRHEVNL 443 (696)
Q Consensus 369 ~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~-----~~~~~~~~i~GRl~lDl~~~~r~~~kl 443 (696)
+||||++||++++++||||++|++.+|+++...++|++.....+.+.. ....+.+.+.||+++++|+++|.+.+|
T Consensus 751 ~DPDIl~GyEi~~~SWGyl~eR~~~l~~di~~~lsRv~~~~~~n~~d~~~ewg~tt~S~i~i~GR~~lNiWRilR~eV~L 830 (1488)
T KOG0968|consen 751 YDPDILLGYEIHNLSWGYLIERAKLLGIDISRDLSRVKCYEKTNESDDEREWGYTTISGINIVGRHVLNIWRILRSEVAL 830 (1488)
T ss_pred cCcceeeeeeecccchHHHHHHHHHhcchHHHHHhcCCChhhhhhhhhhhhccceeeccccccchhhhhHHHHHhhhhhh
Confidence 999999999999999999999999999999988999986543332221 112567899999999999999999999
Q ss_pred CCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHhCCchhhhhc
Q psy5925 444 QSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLS 523 (696)
Q Consensus 444 ~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl~ii~~~~ela~l~gi~~~~vl~ 523 (696)
++|+|++|+.++|+++.|.++++.+++||+++....+++++.|++.++.++++|+.++++|.++.||||++||+|.+|++
T Consensus 831 ~nYtlEsv~~nVL~kk~P~~~~~~Lt~~~~s~~~~~r~~~l~y~l~Ra~~NlelLsq~d~i~k~~E~ARv~GIdF~sV~t 910 (1488)
T KOG0968|consen 831 TNYTLESVVFNVLRKKIPMFDFAVLTRWWKSKRSAERNDVLNYLLSRARLNLELLSQLDWILKNSEMARVIGIDFHSVLT 910 (1488)
T ss_pred hhccHHHHHHHHHHhhcCCCcHHHHHHHHhcccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHHHHhhcceeeEEee
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CcchhhhHHHhhcccccCCeeeeCCchhhhhccCCCCCCCeeeecccccccCceeeeeccccchhhhhhccCCccCcccc
Q psy5925 524 RGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR 603 (696)
Q Consensus 524 rGs~~rvEslLlr~~~~~~~i~p~p~~~q~~~~~~~~~GglVleP~~Gly~~pVvvLDF~SLYPSIIiayNiC~sT~~~~ 603 (696)
||||+||||+|+|.||++|||+|+|+.+|++.|+++++.++||||++.||++||+||||||||||||||||+|||||+|+
T Consensus 911 RGSQ~rVESmllRiAk~~Nyi~~SPs~kQv~~q~A~EcvPLVMEPeS~fY~~PViVLDFQSLYPSivIAYNyCySTcLG~ 990 (1488)
T KOG0968|consen 911 RGSQFRVESMLLRIAKPMNYIAPSPSHKQVAMQGAPECVPLVMEPESAFYFDPVIVLDFQSLYPSIVIAYNYCYSTCLGK 990 (1488)
T ss_pred ccchhhHHHHHHHHhcccccccCCccHHHHhhcCCccccceeecchhhhccCceEEEEchhhcchHHHhHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccChhHHhhcccceeeCCCCceeecCCCcccchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH
Q psy5925 604 VEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNL 683 (696)
Q Consensus 604 ~~~~~~~~~~~~G~~~~~~~~~~l~~~~d~i~~~p~g~~fvk~~~r~GILP~~L~~Ll~~R~~vKk~mk~~~~~~~l~~~ 683 (696)
+.+++..+++++|++.+..|++++.+..++|+++|||++|||+++|+|+||+||+|||++|.|||+.||+.+++..+.|+
T Consensus 991 v~~l~~~~e~~LG~s~~s~~~dil~~~~ndV~isPNgv~yVK~sVRkgvLpkmLeEIL~tRiMVKkaMK~~~~~~~L~Ri 1070 (1488)
T KOG0968|consen 991 VGNLNQMNEIKLGVSKYSLPPDILVLAKNDVTISPNGVMYVKPSVRKGVLPKMLEEILATRIMVKKAMKRTKDNKKLKRI 1070 (1488)
T ss_pred HHhhccccceeeeeeeccCCHHHHHHHhcceeeCCCceEEechhhhhhhHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 99999988899999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccc
Q psy5925 684 TMLNSMLL 691 (696)
Q Consensus 684 l~ansmy~ 691 (696)
|||+|+.+
T Consensus 1071 LnaRQLAL 1078 (1488)
T KOG0968|consen 1071 LNARQLAL 1078 (1488)
T ss_pred hhhHHHHH
Confidence 99988764
|
|
| >PTZ00166 DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0969|consensus | Back alignment and domain information |
|---|
| >KOG0970|consensus | Back alignment and domain information |
|---|
| >PHA02528 43 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >PHA02524 43A DNA polymerase subunit A; Provisional | Back alignment and domain information |
|---|
| >TIGR00592 pol2 DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >PHA03036 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >PRK05762 DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >smart00486 POLBc DNA polymerase type-B family | Back alignment and domain information |
|---|
| >COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK05761 DNA polymerase I; Reviewed | Back alignment and domain information |
|---|
| >PHA03334 putative DNA polymerase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >cd05534 POLBc_zeta DNA polymerase type-B zeta subfamily catalytic domain | Back alignment and domain information |
|---|
| >KOG1798|consensus | Back alignment and domain information |
|---|
| >cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >TIGR00592 pol2 DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included | Back alignment and domain information |
|---|
| >cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included | Back alignment and domain information |
|---|
| >cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd00145 POLBc DNA polymerase type-B family catalytic domain | Back alignment and domain information |
|---|
| >KOG0969|consensus | Back alignment and domain information |
|---|
| >cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain | Back alignment and domain information |
|---|
| >KOG0968|consensus | Back alignment and domain information |
|---|
| >cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >PTZ00166 DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05534 POLBc_zeta DNA polymerase type-B zeta subfamily catalytic domain | Back alignment and domain information |
|---|
| >PHA03036 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >PHA03334 putative DNA polymerase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >PHA02524 43A DNA polymerase subunit A; Provisional | Back alignment and domain information |
|---|
| >cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain | Back alignment and domain information |
|---|
| >PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included | Back alignment and domain information |
|---|
| >PRK05761 DNA polymerase I; Reviewed | Back alignment and domain information |
|---|
| >PHA02528 43 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins | Back alignment and domain information |
|---|
| >KOG0970|consensus | Back alignment and domain information |
|---|
| >PRK05762 DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >KOG1829|consensus | Back alignment and domain information |
|---|
| >cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd00145 POLBc DNA polymerase type-B family catalytic domain | Back alignment and domain information |
|---|
| >cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain | Back alignment and domain information |
|---|
| >smart00486 POLBc DNA polymerase type-B family | Back alignment and domain information |
|---|
| >cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain | Back alignment and domain information |
|---|
| >PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A | Back alignment and domain information |
|---|
| >cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain | Back alignment and domain information |
|---|
| >PHA02563 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >COG3359 Predicted exonuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK06309 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK06310 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PHA02735 putative DNA polymerase type B; Provisional | Back alignment and domain information |
|---|
| >PRK08517 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins | Back alignment and domain information |
|---|
| >PRK05601 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK06807 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PF03175 DNA_pol_B_2: DNA polymerase type B, organellar and viral; InterPro: IPR004868 This entry is found in DNA polymerase type B proteins | Back alignment and domain information |
|---|
| >smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases | Back alignment and domain information |
|---|
| >PRK07883 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK06063 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >TIGR03491 RecB family nuclease, putative, TM0106 family | Back alignment and domain information |
|---|
| >cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III | Back alignment and domain information |
|---|
| >cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins | Back alignment and domain information |
|---|
| >PRK09146 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK07740 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK07942 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial | Back alignment and domain information |
|---|
| >TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type | Back alignment and domain information |
|---|
| >PRK09145 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK05711 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family | Back alignment and domain information |
|---|
| >cd06127 DEDDh DEDDh 3'-5' exonuclease domain family | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK07748 sporulation inhibitor KapD; Provisional | Back alignment and domain information |
|---|
| >PRK05168 ribonuclease T; Provisional | Back alignment and domain information |
|---|
| >cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily | Back alignment and domain information |
|---|
| >PRK06722 exonuclease; Provisional | Back alignment and domain information |
|---|
| >PRK11779 sbcB exonuclease I; Provisional | Back alignment and domain information |
|---|
| >TIGR01298 RNaseT ribonuclease T | Back alignment and domain information |
|---|
| >PF14446 Prok-RING_1: Prokaryotic RING finger family 1 | Back alignment and domain information |
|---|
| >PRK07247 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins | Back alignment and domain information |
|---|
| >PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides | Back alignment and domain information |
|---|
| >cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins | Back alignment and domain information |
|---|
| >cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins | Back alignment and domain information |
|---|
| >cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins | Back alignment and domain information |
|---|
| >COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK09182 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK00448 polC DNA polymerase III PolC; Validated | Back alignment and domain information |
|---|
| >cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins | Back alignment and domain information |
|---|
| >COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK05359 oligoribonuclease; Provisional | Back alignment and domain information |
|---|
| >PHA02563 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins | Back alignment and domain information |
|---|
| >cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins | Back alignment and domain information |
|---|
| >cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins | Back alignment and domain information |
|---|
| >PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PRK05755 DNA polymerase I; Provisional | Back alignment and domain information |
|---|
| >PTZ00315 2'-phosphotransferase; Provisional | Back alignment and domain information |
|---|
| >cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases | Back alignment and domain information |
|---|
| >smart00249 PHD PHD zinc finger | Back alignment and domain information |
|---|
| >PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG2114|consensus | Back alignment and domain information |
|---|
| >cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 696 | ||||
| 3iay_A | 919 | Ternary Complex Of Dna Polymerase Delta Length = 91 | 9e-27 | ||
| 1wns_A | 774 | Crystal Structure Of Family B Dna Polymerase From H | 4e-18 | ||
| 1wn7_A | 774 | Crystal Structure Of Archaeal Family B Dna Polymera | 4e-18 | ||
| 1qht_A | 775 | Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon | 1e-17 | ||
| 2vwk_A | 773 | Uracil Recognition In Archaeal Dna Polymerases Capt | 4e-17 | ||
| 2xhb_A | 773 | Crystal Structure Of Dna Polymerase From Thermococc | 4e-17 | ||
| 2vwj_A | 773 | Uracil Recognition In Archaeal Dna Polymerases Capt | 4e-17 | ||
| 1tgo_A | 773 | Thermostable B Type Dna Polymerase From Thermococcu | 6e-17 | ||
| 1qqc_A | 773 | Crystal Structure Of An Archaebacterial Dna Polymer | 6e-16 | ||
| 2jgu_A | 775 | Crystal Structure Of Dna-directed Dna Polymerase Le | 7e-16 | ||
| 1d5a_A | 733 | Crystal Structure Of An Archaebacterial Dna Polymer | 2e-15 | ||
| 4ahc_A | 775 | Crystal Structure Of An Evolved Replicating Dna Pol | 3e-15 | ||
| 4flt_A | 793 | Pyrococcus Abyssi B Family Dna Polymerase Bound To | 2e-14 | ||
| 3a2f_A | 775 | Crystal Structure Of Pyrococcus Furiosus Dna Polyme | 3e-14 | ||
| 4fm2_A | 793 | Pyrococcus Abyssi B Family Dna Polymerase (Triple M | 8e-14 | ||
| 2gv9_A | 1193 | Crystal Structure Of The Herpes Simplex Virus Type | 4e-13 | ||
| 4fvm_A | 910 | Crystal Structure Of Yeast Dna Polymerase Alpha Len | 2e-09 | ||
| 4fyd_A | 910 | Crystal Structure Of Yeast Dna Polymerase Alpha Bou | 3e-09 | ||
| 4b08_A | 910 | Crystal Structure Of Yeast Dna Polymerase Alpha, Se | 1e-07 |
| >pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta Length = 919 | Back alignment and structure |
|
| >pdb|1WNS|A Chain A, Crystal Structure Of Family B Dna Polymerase From Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1 Length = 774 | Back alignment and structure |
| >pdb|1WN7|A Chain A, Crystal Structure Of Archaeal Family B Dna Polymerase Mutant Length = 774 | Back alignment and structure |
| >pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon Length = 775 | Back alignment and structure |
| >pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93q Polymerase Variant Length = 773 | Back alignment and structure |
| >pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus Gorgonarius In Complex With Hypoxanthine-Containing Dna Length = 773 | Back alignment and structure |
| >pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography Length = 773 | Back alignment and structure |
| >pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus Gorgonarius Length = 773 | Back alignment and structure |
| >pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok Length = 773 | Back alignment and structure |
| >pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase Length = 775 | Back alignment and structure |
| >pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok. Deposition Of Second Native Structure At 2.4 Angstrom Length = 733 | Back alignment and structure |
| >pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase Length = 775 | Back alignment and structure |
| >pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna, In Edition Mode Length = 793 | Back alignment and structure |
| >pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna PolymerasePCNA Monomer Mutant Complex Length = 775 | Back alignment and structure |
| >pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant) Bound To A Dsdna, In Edition Mode Length = 793 | Back alignment and structure |
| >pdb|2GV9|A Chain A, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna Polymerase Length = 1193 | Back alignment and structure |
| >pdb|4FVM|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Length = 910 | Back alignment and structure |
| >pdb|4FYD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To Dna/rna And Dgtp Length = 910 | Back alignment and structure |
| >pdb|4B08|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha, Selenomethionine Protein Length = 910 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919 | Back alignment and structure |
|---|
Score = 297 bits (761), Expect = 4e-89
Identities = 97/439 (22%), Positives = 177/439 (40%), Gaps = 60/439 (13%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 304
L +++ +I R + P+P YD V I + ++ + + S +
Sbjct: 249 LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPITGS--- 305
Query: 305 PIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIE 364
+ + E+E+ S + + + DPD++IGY F YLL R
Sbjct: 306 --MIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNR-----------AKAL 352
Query: 365 NVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQ 424
V + G L I E + + + +
Sbjct: 353 KVNDFP---YFGR--------------------LKTVKQEIKESVFSSKAYGTRETKNVN 389
Query: 425 MPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTV 484
+ GR+ ++L + ++ E L+SYT + H L E+ + +++ + +
Sbjct: 390 IDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSET-RRRLA 448
Query: 485 EHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFV 544
+ L +RL+E+L + +EMAR+ G+ F +L+RG Q +V S + R + V
Sbjct: 449 VYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVVSQLFRKCLEIDTV 508
Query: 545 AVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRV 604
P+++ +A E ++EP Y PI LDF SLYPS+++A+N C++T +
Sbjct: 509 I--PNMQSQASDDQYEG-ATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKA 565
Query: 605 EHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTR 664
R K+ ++ I+P+G FV R GILP +L E++ R
Sbjct: 566 T-----------------VERLNLKIDEDYVITPNGDYFVTTKRRRGILPIILDELISAR 608
Query: 665 LMVKQSMKEYKFSESLRNL 683
K+ +++ K L
Sbjct: 609 KRAKKDLRDEKDPFKRDVL 627
|
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919 | Back alignment and structure |
|---|
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Length = 775 | Back alignment and structure |
|---|
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Length = 775 | Back alignment and structure |
|---|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Length = 1193 | Back alignment and structure |
|---|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Length = 1193 | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Length = 786 | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Length = 786 | Back alignment and structure |
|---|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847 | Back alignment and structure |
|---|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847 | Back alignment and structure |
|---|
| >3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A* 3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ... Length = 903 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Length = 388 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 696 | |||
| 3iay_A | 919 | DNA polymerase delta catalytic subunit; protein-DN | 100.0 | |
| 2gv9_A | 1193 | DNA polymerase; polymerase alpha fold, transferase | 100.0 | |
| 3qex_A | 903 | DNA polymerase, GP43; difluorotoluene nucleoside; | 100.0 | |
| 1qht_A | 775 | Protein (DNA polymerase); archaea, hyperthermostab | 100.0 | |
| 3k59_A | 786 | POL II, DNA polymerase II; protein-DNA complex, DN | 100.0 | |
| 1s5j_A | 847 | DNA polymerase I; replication, disulfide bonds, tr | 100.0 | |
| 1noy_A | 388 | Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas | 100.0 | |
| 3iay_A | 919 | DNA polymerase delta catalytic subunit; protein-DN | 99.75 | |
| 2gv9_A | 1193 | DNA polymerase; polymerase alpha fold, transferase | 99.7 | |
| 2py5_A | 575 | DNA polymerase; protein-DNA complex, replication, | 99.69 | |
| 1qht_A | 775 | Protein (DNA polymerase); archaea, hyperthermostab | 99.53 | |
| 3qex_A | 903 | DNA polymerase, GP43; difluorotoluene nucleoside; | 99.53 | |
| 3k59_A | 786 | POL II, DNA polymerase II; protein-DNA complex, DN | 99.43 | |
| 1s5j_A | 847 | DNA polymerase I; replication, disulfide bonds, tr | 99.43 | |
| 1y97_A | 238 | Three prime repair exonuclease 2; TREX2, hydrolase | 98.12 | |
| 3mxm_B | 242 | Three prime repair exonuclease 1; RNAse H-like fol | 97.98 | |
| 2p1j_A | 186 | POLIII, DNA polymerase III POLC-type; structural g | 97.97 | |
| 3u3y_B | 314 | Three prime repair exonuclease 1; RNAse H fold, 3' | 97.9 | |
| 1zbh_A | 299 | 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif | 97.58 | |
| 3v9w_A | 235 | Ribonuclease T; DEDD nucleases family, EXO-nucleas | 97.51 | |
| 1w0h_A | 204 | 3'-5' exonuclease ERI1; nuclease domain, hydrolase | 97.47 | |
| 2f96_A | 224 | Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas | 97.45 | |
| 2gui_A | 194 | DNA polymerase III epsilon subunit; DNA polymerase | 97.4 | |
| 1zbu_A | 349 | ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; | 97.17 | |
| 2qxf_A | 482 | Exodeoxyribonuclease I; alpha-beta domain, DNAQ su | 96.77 | |
| 2xri_A | 224 | ERI1 exoribonuclease 3; hydrolase, metal binding; | 96.29 | |
| 3cg7_A | 308 | CRN-4, cell death-related nuclease 4; hydrolase, a | 94.59 | |
| 1wlj_A | 189 | Interferon stimulated gene 20KDA; exoribonuclease, | 93.38 | |
| 2igi_A | 180 | Oligoribonuclease; RNAse, exoribonuclease, exonucl | 90.7 | |
| 2kfn_A | 605 | Klenow fragment of DNA polymerase I; complex (poly | 90.64 | |
| 3tr8_A | 186 | Oligoribonuclease; transcription, hydrolase; 2.50A | 89.96 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 89.76 | |
| 2xb1_A | 105 | Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; | 89.01 | |
| 1wil_A | 89 | KIAA1045 protein; ring finger domain, structural g | 88.8 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 88.4 | |
| 2py5_A | 575 | DNA polymerase; protein-DNA complex, replication, | 88.29 | |
| 2puy_A | 60 | PHD finger protein 21A; PHD finger, histone CODE, | 88.07 | |
| 2k16_A | 75 | Transcription initiation factor TFIID subunit 3; p | 86.98 | |
| 2ku3_A | 71 | Bromodomain-containing protein 1; PHD finger, chro | 86.71 | |
| 1xwh_A | 66 | Autoimmune regulator; PHD domain, Zn binding domai | 86.44 | |
| 1x9m_A | 698 | DNA polymerase; DNA ploymerase, N-2-acetylaminoflu | 86.42 | |
| 1wev_A | 88 | Riken cDNA 1110020M19; structural genomics, PHD do | 86.33 | |
| 1f62_A | 51 | Transcription factor WSTF; Zn-finger; NMR {Homo sa | 85.85 | |
| 2gbz_A | 194 | Oligoribonuclease; ORN, deddh, structural genomics | 85.09 | |
| 2yql_A | 56 | PHD finger protein 21A; PHD domain, structural gen | 85.02 | |
| 2yt5_A | 66 | Metal-response element-binding transcription facto | 83.36 | |
| 2e6s_A | 77 | E3 ubiquitin-protein ligase UHRF2; PHD domain, str | 82.68 | |
| 2l5u_A | 61 | Chromodomain-helicase-DNA-binding protein 4; CHD4, | 82.63 | |
| 2l43_A | 88 | N-teminal domain from histone H3.3, linker, PHD1 f | 81.73 | |
| 2e6r_A | 92 | Jumonji/ARID domain-containing protein 1D; PHD dom | 81.31 | |
| 1vk0_A | 206 | Hypothetical protein; homohexamer, AT5G06450, stru | 80.97 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 80.16 |
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-73 Score=681.31 Aligned_cols=435 Identities=23% Similarity=0.318 Sum_probs=341.7
Q ss_pred chhhHHHHH-HHhcCCc-ccccc--ccccccCCCCCCccccccCCCCcccccc--c---ccCCCceEEEEEEEeecCCCC
Q psy5925 190 NPDLFKSFI-RKQLETP-KRRIC--DSYAIDAMTPDTTGDYQMGLDNLNEVTS--H---VENYYLTVLAVEIHAISRALL 260 (696)
Q Consensus 190 ~~~l~~~~l-~r~~~~p-~~~~~--~~~~I~~~t~~~~~gfk~~~~~~~~~~~--~---~~~~~LtilsleIe~~sr~~~ 260 (696)
+-....+|+ .+.+++| +.++. ...........+||.+++.+..++.+.. . ...|++++|||||||.++++.
T Consensus 185 dI~~~~RfliD~~I~g~~W~~i~~~~~~~~~~~~~~S~c~~Ev~v~~~~l~~~~~~~~~~~~PplrilSfDIEt~~~~g~ 264 (919)
T 3iay_A 185 NIAYTLRLMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINYRNLIAHPAEGDWSHTAPLRIMSFDIECAGRIGV 264 (919)
T ss_dssp CCCHHHHHHHHHTCCTTCEEEECTTSEEECCGGGCCBCCSEEEEEETTTCEEECSSGGGSCCCCCEEEEEEEEECCCTTS
T ss_pred CCChHhhheeecCCccceEEEEecCcceeccccCCccceeEEEEeeccccccccccccccCCCCceEEEEEEEECCCCCC
Confidence 444566777 7788888 55543 2211111133578988876654433321 1 236999999999999999989
Q ss_pred CCCCCCCcEEEEEEEeecCCCCCCceEEEEEEcCCCCCcccccCccccccccchhhhhhhhhhccccCCCcccccccccc
Q psy5925 261 KPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIET 340 (696)
Q Consensus 261 ~Pdp~~D~I~~I~~~~~~~~~~~~~~~g~ilv~~~~~~~~~~~~p~~~~~~~~~~e~~~~~~~~~~~~~p~~~~g~ei~~ 340 (696)
||+|++|+|++|++.++.++........++. +..+++.
T Consensus 265 fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~---------------------------------l~~~~~~--------- 302 (919)
T 3iay_A 265 FPEPEYDPVIQIANVVSIAGAKKPFIRNVFT---------------------------------LNTCSPI--------- 302 (919)
T ss_dssp CCCTTTCCEEEEEEEEEETTCSSCSEEEEEE---------------------------------ESCCCCB---------
T ss_pred CCCCCCCcEEEEEEEEecCCCcccceeEEEE---------------------------------ecCCCCC---------
Confidence 9999999999999988765431111111111 1112210
Q ss_pred cccCcceEEEEeCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHHcCCCCcccccccccccc-cc---cC--
Q psy5925 341 FSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK-RN---SS-- 414 (696)
Q Consensus 341 ~~~~~~~~V~~~~sE~eLL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~-~~---~~-- 414 (696)
.+..|..|++|++||.+|+++|+++|||||+|||+++||||||.+||+.+|++.|..+||.+.... .+ ++
T Consensus 303 ----~~~~V~~~~sE~eLL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~ 378 (919)
T 3iay_A 303 ----TGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSK 378 (919)
T ss_dssp ----TTBEEEEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEET
T ss_pred ----CCCeEEECCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccc
Confidence 246899999999999999999999999999999999999999999999999999888999864321 10 11
Q ss_pred -CCccccceeeecccEEEehHHHHhhhcCCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHH
Q psy5925 415 -RDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTG 493 (696)
Q Consensus 415 -~~~~~~~~~~i~GRl~lDl~~~~r~~~kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l 493 (696)
.+.+....+.+.||+++|+|+++++++++.||+|++||+++||++|+++++++|.+||+.++ ..+.++++||++||.+
T Consensus 379 ~~g~~~~~~~~i~GR~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~-~~~~~L~~Y~~~Da~l 457 (919)
T 3iay_A 379 AYGTRETKNVNIDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDS-ETRRRLAVYCLKDAYL 457 (919)
T ss_dssp TTEEEEECCBCCTTCEEEEHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCH-HHHHHHHHHHHHHHHH
T ss_pred cccccccceeEEcCeEEEEhHHHHHhhcCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcCh-hhHHHHHHHHHHHHHH
Confidence 11222335689999999999999999999999999999999999999999999999998653 4578999999999999
Q ss_pred HHHHHHHhcccchhhhHHHHhCCchhhhhcCcchhhhHHHhhcccccCCeeeeCCchhhhhccCCCCCCCeeeecccccc
Q psy5925 494 IIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLY 573 (696)
Q Consensus 494 ~~~L~~kl~ii~~~~ela~l~gi~~~~vl~rGs~~rvEslLlr~~~~~~~i~p~p~~~q~~~~~~~~~GglVleP~~Gly 573 (696)
+++|+.++++++++.|+|+++|++++++++||+|+++|++|+|+|+++||++|++... .....|+||+|+||++|+|
T Consensus 458 ~~~L~~kl~~l~~~~elArl~Gi~~~~vl~rG~qi~ves~Llr~a~~~~~ilP~~~~~---~~~~~y~Gg~V~eP~~G~y 534 (919)
T 3iay_A 458 PLRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVVSQLFRKCLEIDTVIPNMQSQ---ASDDQYEGATVIEPIRGYY 534 (919)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCCCHHHHHHSCHHHHHHHHHHHHHHHTTEECBCCCCC---CCSSCCCCCCBCCCCCEEE
T ss_pred HHHHHHHHhhhHHHHHHHHHcCCCHHHhhcccchHHHHHHHHHHHhhCCeeCCCcccc---cccccCCCCEEecCCCCce
Confidence 9999999999999999999999999999999999999999999999999999886532 2356799999999999999
Q ss_pred cCceeeeeccccchhhhhhccCCccCcccccccCCCCCCCCCcccccccChhHHhhcccceeeCCCCceeecCCCcccch
Q psy5925 574 TDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGIL 653 (696)
Q Consensus 574 ~~pVvvLDF~SLYPSIIiayNiC~sT~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~d~i~~~p~g~~fvk~~~r~GIL 653 (696)
++||+||||+||||||||||||||||+++... .. .+... ..+++..+|+|.+|+++++++|||
T Consensus 535 ~~pV~~lDF~SLYPSIi~~~Nlc~~Tl~~~~~-~~----------~~~~~------~~~~~~~~p~g~~f~~~~~~~gil 597 (919)
T 3iay_A 535 DVPIATLDFNSLYPSIMMAHNLCYTTLCNKAT-VE----------RLNLK------IDEDYVITPNGDYFVTTKRRRGIL 597 (919)
T ss_dssp CSCEEEEEETTHHHHHHHHTTCSGGGEECHHH-HH----------HTTCC------BTTTEEECTTSCEEECTTTCCCHH
T ss_pred eccEEEEEecccchHHHHhcCcCcccccccch-hh----------hcCCC------CCcceeeCCCCcEEeccCCCCCch
Confidence 99999999999999999999999999986421 00 00000 024677899999999998999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHH---------hhhcccccc
Q psy5925 654 PKMLQEILDTRLMVKQSMKEYKFSESLRNL---------TMLNSMLLI 692 (696)
Q Consensus 654 P~~L~~Ll~~R~~vKk~mk~~~~~~~l~~~---------l~ansmy~~ 692 (696)
|++|++|+++|+++|+.||+.++ +..+++ +.||||||.
T Consensus 598 p~~l~~ll~~R~~~K~~mk~~~d-~~~~~~ld~~Q~AlKi~~NS~YG~ 644 (919)
T 3iay_A 598 PIILDELISARKRAKKDLRDEKD-PFKRDVLNGRQLALKISANSVYGF 644 (919)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999998654 444433 567999984
|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* | Back alignment and structure |
|---|
| >3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ... | Back alignment and structure |
|---|
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* | Back alignment and structure |
|---|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 | Back alignment and structure |
|---|
| >1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* | Back alignment and structure |
|---|
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* | Back alignment and structure |
|---|
| >2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* | Back alignment and structure |
|---|
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A | Back alignment and structure |
|---|
| >3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ... | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* | Back alignment and structure |
|---|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 | Back alignment and structure |
|---|
| >1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A | Back alignment and structure |
|---|
| >2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
| >3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* | Back alignment and structure |
|---|
| >1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A | Back alignment and structure |
|---|
| >1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* | Back alignment and structure |
|---|
| >1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* | Back alignment and structure |
|---|
| >2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A | Back alignment and structure |
|---|
| >1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A | Back alignment and structure |
|---|
| >2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* | Back alignment and structure |
|---|
| >3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
| >2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 | Back alignment and structure |
|---|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* | Back alignment and structure |
|---|
| >2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} | Back alignment and structure |
|---|
| >2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* | Back alignment and structure |
|---|
| >2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A | Back alignment and structure |
|---|
| >1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* | Back alignment and structure |
|---|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 | Back alignment and structure |
|---|
| >2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A | Back alignment and structure |
|---|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 696 | ||||
| d1q8ia1 | 388 | c.55.3.5 (A:2-389) Exonuclease domain of family B | 3e-25 | |
| d1tgoa1 | 347 | c.55.3.5 (A:1-347) Exonuclease domain of family B | 5e-21 | |
| d1tgoa2 | 426 | e.8.1.1 (A:348-773) Family B DNA polymerase {Archa | 2e-17 | |
| d1tgoa2 | 426 | e.8.1.1 (A:348-773) Family B DNA polymerase {Archa | 1e-07 | |
| d1ih7a2 | 528 | e.8.1.1 (A:376-903) Family B DNA polymerase {Bacte | 3e-15 | |
| d1ih7a2 | 528 | e.8.1.1 (A:376-903) Family B DNA polymerase {Bacte | 1e-09 | |
| d1noya_ | 372 | c.55.3.5 (A:) Exonuclease domain of family B DNA p | 2e-13 | |
| d1q8ia2 | 394 | e.8.1.1 (A:390-783) Family B DNA polymerase {Esche | 1e-12 | |
| d1q8ia2 | 394 | e.8.1.1 (A:390-783) Family B DNA polymerase {Esche | 4e-08 | |
| d1s5ja2 | 415 | e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfo | 8e-11 | |
| d1s5ja2 | 415 | e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfo | 1e-06 | |
| d1ih7a1 | 375 | c.55.3.5 (A:1-375) Exonuclease domain of family B | 4e-08 | |
| d2py5a2 | 388 | e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacterio | 6e-08 | |
| d2py5a2 | 388 | e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacterio | 3e-05 | |
| d1s5ja1 | 410 | c.55.3.5 (A:40-449) Exonuclease domain of family B | 2e-05 |
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Escherichia coli [TaxId: 562]
Score = 106 bits (265), Expect = 3e-25
Identities = 40/270 (14%), Positives = 83/270 (30%), Gaps = 8/270 (2%)
Query: 277 YTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGY 336
V L P ++ I + + EL+ +E + +
Sbjct: 125 VEGDMHNGTIVNARLKPHPDYRPPLKWVSIDI-ETTRHGELYCIGLEG--CGQRIVYMLG 181
Query: 337 EIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGL 396
+ E +V++ +L +DPD++IG+ + L + L
Sbjct: 182 PENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRL 241
Query: 397 NLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE-VNLQSYTFENIMYHV 455
L L R + + Q GR++I+ L+ N S++ E + +
Sbjct: 242 PL--RLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL 299
Query: 456 LHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFG 515
L E + + + R K + L + ++ + + + E A + G
Sbjct: 300 LGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNG 359
Query: 516 IQFYEVLSRGSQFRVESIMLRLSRLNNFVA 545
+ GS + +VA
Sbjct: 360 LPVDRHG--GSVAAFGHLYFPRMHRAGYVA 387
|
| >d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 347 | Back information, alignment and structure |
|---|
| >d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 426 | Back information, alignment and structure |
|---|
| >d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 426 | Back information, alignment and structure |
|---|
| >d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} Length = 528 | Back information, alignment and structure |
|---|
| >d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} Length = 528 | Back information, alignment and structure |
|---|
| >d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Length = 372 | Back information, alignment and structure |
|---|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} Length = 394 | Back information, alignment and structure |
|---|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} Length = 394 | Back information, alignment and structure |
|---|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} Length = 415 | Back information, alignment and structure |
|---|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} Length = 415 | Back information, alignment and structure |
|---|
| >d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Length = 375 | Back information, alignment and structure |
|---|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} Length = 388 | Back information, alignment and structure |
|---|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} Length = 388 | Back information, alignment and structure |
|---|
| >d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Length = 410 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 696 | |||
| d1q8ia1 | 388 | Exonuclease domain of family B DNA polymerases {Es | 100.0 | |
| d1tgoa1 | 347 | Exonuclease domain of family B DNA polymerases {Ar | 100.0 | |
| d1noya_ | 372 | Exonuclease domain of family B DNA polymerases {Ba | 99.97 | |
| d1ih7a1 | 375 | Exonuclease domain of family B DNA polymerases {Ba | 99.97 | |
| d1s5ja1 | 410 | Exonuclease domain of family B DNA polymerases {Su | 99.96 | |
| d1tgoa2 | 426 | Family B DNA polymerase {Archaeon Thermococcus gor | 99.95 | |
| d1s5ja2 | 415 | Family B DNA polymerase {Sulfolobus solfataricus [ | 99.9 | |
| d1ih7a2 | 528 | Family B DNA polymerase {Bacteriophage RB69 [TaxId | 99.85 | |
| d1q8ia2 | 394 | Family B DNA polymerase {Escherichia coli [TaxId: | 99.83 | |
| d1s5ja2 | 415 | Family B DNA polymerase {Sulfolobus solfataricus [ | 99.6 | |
| d1tgoa2 | 426 | Family B DNA polymerase {Archaeon Thermococcus gor | 99.59 | |
| d1ih7a2 | 528 | Family B DNA polymerase {Bacteriophage RB69 [TaxId | 99.41 | |
| d1q8ia2 | 394 | Family B DNA polymerase {Escherichia coli [TaxId: | 99.26 | |
| d1x9ma1 | 204 | Exonuclease domain of T7 DNA polymerase {Bacteriop | 99.07 | |
| d2py5a2 | 388 | phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: | 98.64 | |
| d2py5a2 | 388 | phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: | 97.31 | |
| d3b6oa1 | 226 | Three prime repair exonuclease 1, TREX1 {Mouse (Mu | 96.7 | |
| d2guia1 | 174 | N-terminal exonuclease domain of the epsilon subun | 96.6 | |
| d1y97a1 | 228 | Three prime repair exonuclease 2, TREX2 {Human (Ho | 96.2 | |
| d1w0ha_ | 200 | Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 | 96.12 | |
| d2qxfa1 | 467 | Exonuclease I {Escherichia coli K12 (Escherichia c | 95.8 | |
| d1wlja_ | 173 | Interferon-stimulated gene 20 kDa protein, ISG20 { | 95.62 | |
| d2hhva1 | 171 | Exonuclease domain of prokaryotic DNA polymerase { | 92.99 | |
| d1kfsa1 | 195 | Exonuclease domain of prokaryotic DNA polymerase { | 91.43 | |
| d1weva_ | 88 | PHD finger protein 22 {Mouse (Mus musculus) [TaxId | 90.87 | |
| d1yt3a3 | 193 | Ribonuclease D, catalytic domain {Escherichia coli | 89.52 | |
| d1we9a_ | 64 | PHD finger protein At5g26210 {Thale cress (Arabido | 87.87 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 85.53 | |
| d1tbna_ | 66 | Protein kinase c-gamma {Rat (Rattus rattus) [TaxId | 85.32 | |
| d1f62a_ | 51 | Williams-Beuren syndrome transcription factor, WST | 84.49 | |
| d1fp0a1 | 70 | Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo | 84.06 | |
| d1vk0a_ | 206 | Hypothetical protein AT5G06450 {Thale-cress (Arabi | 80.82 |
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-35 Score=320.16 Aligned_cols=193 Identities=17% Similarity=0.230 Sum_probs=157.9
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeee
Q psy5925 346 LLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQM 425 (696)
Q Consensus 346 ~~~V~~~~sE~eLL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i 425 (696)
+.+|..|++|++||.+|+++++++|||||+|||+++||||||.+||+.+|++.. +||......++............+
T Consensus 191 ~~~v~~~~~E~~LL~~F~~~i~~~dPDii~GyNi~~FDlpyL~~Ra~~~~i~~~--lgr~~~~~~~~~~~~~~~~~~~~i 268 (388)
T d1q8ia1 191 DFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLR--LGRDNSELEWREHGFKNGVFFAQA 268 (388)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCC--CSSSSCCCEEEEECSSSCEEEEEB
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHcCCCEEEecCCCCCCHHHHHHHHHHhCCCch--hhhcCCcceeEEccccccceeeec
Confidence 467889999999999999999999999999999999999999999999999876 888754332221111122345789
Q ss_pred cccEEEehHHHHhhhc-CCCCCCHHHHHHHHcCCCcCCCC-h---hhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHH
Q psy5925 426 PGRIVINLWRLLRHEV-NLQSYTFENIMYHVLHERIPLHS-W---KLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQ 500 (696)
Q Consensus 426 ~GRl~lDl~~~~r~~~-kl~sysL~~Va~~~L~~~k~~~~-~---~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~k 500 (696)
+||+++|+|..+++.+ +++||+|++||+++||++|.... + .++.+.|.++ +.++++||++||.++.+|++|
T Consensus 269 ~Gr~~lD~~~~~k~~~~~~~sy~L~~Va~~~Lg~~K~~~~~~~~~~~~~~~~~~d----~~~l~~Y~~~D~~Lv~~L~~k 344 (388)
T d1q8ia1 269 KGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAED----KPALATYNLKDCELVTQIFHK 344 (388)
T ss_dssp TTBEEEEHHHHHHHSCCCCSCCCHHHHHHTTC------------CTHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeehhHHHHhhhccccccCHhHhhhhhhcccccccChhhhHHHHHhcChhh----HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999884 99999999999999999986443 3 3455566554 689999999999999999999
Q ss_pred hcccchhhhHHHHhCCchhhhhcCcchhhhHHHhhcccccCCeeee
Q psy5925 501 LDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAV 546 (696)
Q Consensus 501 l~ii~~~~ela~l~gi~~~~vl~rGs~~rvEslLlr~~~~~~~i~p 546 (696)
+++++++.++|+++|+|++++ +||...+|++++++|+++||++|
T Consensus 345 ~~~i~~~~ela~l~g~pl~~~--g~s~~~~~~lll~~~~r~g~v~P 388 (388)
T d1q8ia1 345 TEIMPFLLERATVNGLPVDRH--GGSVAAFGHLYFPRMHRAGYVAP 388 (388)
T ss_dssp HTHHHHHHHHHHHHCSCTTTT--CCHHHHHHHHHHHHHHHTTBCCC
T ss_pred HHHHHHHHHHHHHhCCCHHHC--CCcHHHHHHHHHHHHHHCCEeCC
Confidence 999999999999999999985 45666689999999999999986
|
| >d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} | Back information, alignment and structure |
|---|
| >d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
| >d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} | Back information, alignment and structure |
|---|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} | Back information, alignment and structure |
|---|
| >d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} | Back information, alignment and structure |
|---|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} | Back information, alignment and structure |
|---|
| >d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} | Back information, alignment and structure |
|---|
| >d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
| >d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|