Psyllid ID: psy5931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
AIIQFGKiarkhhltSVCLDslfrlytipsvpivDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDymeaqftnpsppgsapnmvLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF
Flexible Loop (DISEMBL)
aiiqfgkiarkhhltsvCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRhqkesmsrkylaKVDYIF
Low Complexity Region (SEG)
AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF
Disordered region (IsUnstruct)
**IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFT*********NMVLGVFAVTCFMHACRHQ******KYLAKVD***
Disordered Region (DISOPRED)
**IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNP****SAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF
Disordered Region (DISEMBL)
AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF
Disordered Region (DISPRO)
AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q80YV3	2565	Transformation/transcript	no	N/A	0.965	0.065	0.687	1e-65
Q9Y4A5	3859	Transformation/transcript	yes	N/A	0.965	0.043	0.687	2e-65
Q8I8U7	3803	Transcription-associated	no	N/A	0.942	0.042	0.644	2e-59
Q9HFE8	3699	Transcription-associated	yes	N/A	0.936	0.043	0.401	7e-30
P38811	3744	Transcription-associated	yes	N/A	0.913	0.042	0.376	8e-27
Q10064	3655	Uncharacterized PI3/PI4-k	no	N/A	0.797	0.037	0.4	1e-24
Q54T85	4582	Probable transcription-as	yes	N/A	0.699	0.026	0.338	7e-19

>sp|Q80YV3|TRRAP_MOUSE Transformation/transcription domain-associated protein OS=Mus musculus GN=Trrap PE=1 SV=2

 Score =  248 bits (633), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 140/173 (80%), Gaps = 6/173 (3%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AIIQ+GKIARK  L +V LD L R++TIP+VPIVDCF+KIRQQVKCYLQ+A + GKN+  
Sbjct: 1728 AIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECM 1787

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            +GLEVIE TNLKY TKEMTAEFYALKGM LAQI +S EANKAFSAAVQMHDV+VKAWA+W
Sbjct: 1788 QGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMW 1847

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
            GDY+E+ F           + LGV A+TC++HACRHQ ES SRKYLAKV ++ 
Sbjct: 1848 GDYLESIFVKER------QLHLGVSAITCYLHACRHQNESKSRKYLAKVLWLL 1894

Adapter protein, which is found in various multiprotein chromatin complexes with histone acetyltransferase activity (HAT), which gives a specific tag for epigenetic transcription activation. Component of the NuA4 histone acetyltransferase complex which is responsible for acetylation of nucleosomal histones H4 and H2A. Plays a central role in MYC transcription activation, and also participates in cell transformation by MYC. Required for p53/TP53-, E2F1- and E2F4-mediated transcription activation. Probably acts by linking transcription factors such as E1A, MYC or E2F1 to HAT complexes such as STAGA thereby allowing transcription activation. Probably not required in the steps following histone acetylation in processes of transcription activation. May be required for the mitotic checkpoint and normal cell cycle progression.
Mus musculus (taxid: 10090)

>sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein OS=Homo sapiens GN=TRRAP PE=1 SV=3

 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 139/173 (80%), Gaps = 6/173 (3%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AIIQ+GKIARK  L +V LD L R++TIP+VPIVDCF+KIRQQVKCYLQ+A + GKN+  
Sbjct: 3040 AIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECM 3099

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            +GLEVIE TNLKY TKEMTAEFYALKGM LAQI +S EANKAFSAAVQMHDV+VKAWA+W
Sbjct: 3100 QGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMW 3159

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
            GDY+E  F           + LGV A+TC++HACRHQ ES SRKYLAKV ++ 
Sbjct: 3160 GDYLENIFVKER------QLHLGVSAITCYLHACRHQNESKSRKYLAKVLWLL 3206

Adapter protein, which is found in various multiprotein chromatin complexes with histone acetyltransferase activity (HAT), which gives a specific tag for epigenetic transcription activation. Component of the NuA4 histone acetyltransferase complex which is responsible for acetylation of nucleosomal histones H4 and H2A. Plays a central role in MYC transcription activation, and also participates in cell transformation by MYC. Required for p53/TP53-, E2F1- and E2F4-mediated transcription activation. Also involved in transcription activation mediated by the adenovirus E1A, a viral oncoprotein that deregulates transcription of key genes. Probably acts by linking transcription factors such as E1A, MYC or E2F1 to HAT complexes such as STAGA thereby allowing transcription activation. Probably not required in the steps following histone acetylation in processes of transcription activation. May be required for the mitotic checkpoint and normal cell cycle progression.

Homo sapiens (taxid: 9606)

>sp|Q8I8U7|TRA1_DROME Transcription-associated protein 1 OS=Drosophila melanogaster GN=Nipped-A PE=1 SV=3

 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 129/169 (76%), Gaps = 6/169 (3%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AII FGKIARKH+LT VC ++L R+YTIPSVPIVDCF+KIRQQVKCYLQM +  GKN++ 
Sbjct: 2951 AIISFGKIARKHNLTGVCQETLSRIYTIPSVPIVDCFQKIRQQVKCYLQMPSTSGKNEIN 3010

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            E LEVIE TNLKY T EM AEFYALKG+LLAQIGRS EA K+FS A Q+HD + KAWA+W
Sbjct: 3011 EALEVIESTNLKYFTGEMNAEFYALKGLLLAQIGRSEEAGKSFSVAAQLHDGLTKAWAMW 3070

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKV 169
            GDYME  F           + L V A+ C++ A R+Q ES +RKY+AKV
Sbjct: 3071 GDYMEQIFLKER------KITLAVDALICYLQASRNQIESKTRKYIAKV 3113

Part of the Tip60 chromatin-remodeling complex which is involved in DNA repair. Upon induction of DNA double-strand breaks, this complex acetylates phosphorylated H2AV in nucleosomes and exchanges it with unmodified H2AV.

Drosophila melanogaster (taxid: 7227)

>sp|Q9HFE8|TRA1_SCHPO Transcription-associated protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tra1 PE=3 SV=1

 Score =  129 bits (325), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 102/172 (59%), Gaps = 10/172 (5%)

Query: 2    IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQE 61
            I +F  +ARKH L SVCL+ L ++YT+P++ I + F K+R+QV CYLQ         L+ 
Sbjct: 2877 INRFAHVARKHKLPSVCLNQLTKIYTLPNIEIQEAFYKLREQVLCYLQ-----NPRDLKT 2931

Query: 62   GLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG 121
            GLEV+ +TNL Y      +EF  LKG  L ++ R  EAN+ ++AAVQ+   + KAWA WG
Sbjct: 2932 GLEVVTNTNLMYFNSRQKSEFVTLKGKFLEKLNRGEEANQMYAAAVQIDLGLPKAWAEWG 2991

Query: 122  DYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
             Y +  F N SP     N+     A++C++ A    + S +RK LA+V ++ 
Sbjct: 2992 RYNDLLF-NKSP----DNLSAACNAISCYLQAAGTYQSSKARKMLARVLWLL 3038

Essential component of histone acetyltransferase (HAT) complexes, which serves as a target for activators during recruitment of HAT complexes. Essential for vegetative growth. Functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38811|TRA1_YEAST Transcription-associated protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRA1 PE=1 SV=1

 Score =  119 bits (299), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 12/170 (7%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
             I +F  +ARKH++  VC+  L R+YT+P++ I + F K+R+Q KC+ Q       N+L 
Sbjct: 2946 VINRFAHVARKHNMPDVCISQLARIYTLPNIEIQEAFLKLREQAKCHYQ-----NMNELT 3000

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
             GL+VI +TNL Y      AEF+ LKGM L+++    EAN+AF+ AVQ+   + KAWA W
Sbjct: 3001 TGLDVISNTNLVYFGTVQKAEFFTLKGMFLSKLRAYEEANQAFATAVQIDLNLAKAWAQW 3060

Query: 121  GDYMEAQFTNPSPPGSAPNMV-LGVFAVTCFMHACRHQKESMSRKYLAKV 169
            G      F N       PN +     A++C++ A    K S  R+ L ++
Sbjct: 3061 G------FFNDRRLSEEPNNISFASNAISCYLQAAGLYKNSKIRELLCRI 3104

Essential component of histone acetyltransferase (HAT) complexes, which serves as a target for activators during recruitment of HAT complexes. Essential for vegetative growth. Functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. SAGA is involved in RNA polymerase II-dependent transcriptional regulation of approximately 10% of yeast genes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction (SPT3, SPT8 and SPT20) and promoter selectivity, interaction with transcription activators (GCN5, ADA2, ADA3 and TRA1), and chromatin modification through histone acetylation (GCN5) and deubiquitination (UBP8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation. SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3, at least after activation at the GAL1-10 locus.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q10064|YAMB_SCHPO Uncharacterized PI3/PI4-kinase family protein C1F5.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F5.11c PE=3 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 88/150 (58%), Gaps = 12/150 (8%)

Query: 2    IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQE 61
            I +F  +AR HHL  VC++ L ++YT+P++ I + F K+R+Q +C+ +       +++Q 
Sbjct: 2815 INRFAHVARVHHLPEVCINQLTKIYTLPNIEIQEAFLKLREQAECHYE-----SPSEMQL 2869

Query: 62   GLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG 121
            GLEVI +TNL Y      AEF+ LKGM   ++G   EAN+AF+ AVQ+     KAW+ WG
Sbjct: 2870 GLEVINNTNLMYFRNRQKAEFFTLKGMFQNRLGEKDEANQAFATAVQIDIGSGKAWSEWG 2929

Query: 122  DYMEAQF-TNPSPPGSAPNMVLGVFAVTCF 150
             Y +  F  NP     A N      AV+CF
Sbjct: 2930 LYHDELFQANPQEIHHACN------AVSCF 2953

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q54T85|TRA1_DICDI Probable transcription-associated protein 1 OS=Dictyostelium discoideum GN=tra1 PE=3 SV=2

 Score = 93.2 bits (230), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/127 (33%), Positives = 73/127 (57%), Gaps = 6/127 (4%)

Query: 4    QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGL 63
            ++  I RKH++  VCL+SL +++ +  + + D F  +++Q+KCYLQ+           G+
Sbjct: 3539 KYSHIVRKHNIIEVCLNSLSKMFDL-QIELHDIFLNLKEQIKCYLQLPT-----HYDTGI 3592

Query: 64   EVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDY 123
             +I  TNL + T     EF  LKG  L ++GR  EAN++F+++V  ++   K W  W  +
Sbjct: 3593 SIINSTNLDFFTPMQKGEFLQLKGEFLNRLGRYDEANQSFASSVSQYENSAKNWISWAHF 3652

Query: 124  MEAQFTN 130
             + QFTN
Sbjct: 3653 CDNQFTN 3659

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
242011206	3758	transformation/transcription domain-asso	0.971	0.044	0.757	1e-71
383854902	3780	PREDICTED: transformation/transcription	0.971	0.044	0.739	4e-71
383854900	3785	PREDICTED: transformation/transcription	0.971	0.044	0.739	4e-71
380021027	3782	PREDICTED: LOW QUALITY PROTEIN: transfor	0.971	0.044	0.739	4e-71
66523982	3782	PREDICTED: transformation/transcription	0.971	0.044	0.739	5e-71
350397835	3783	PREDICTED: transformation/transcription	0.971	0.044	0.734	1e-70
340724340	3783	PREDICTED: transformation/transcription	0.971	0.044	0.734	1e-70
345480161	3803	PREDICTED: transformation/transcription	0.971	0.044	0.739	1e-70
405953136	3591	Transformation/transcription domain-asso	0.965	0.046	0.751	4e-70
321479245	3841	hypothetical protein DAPPUDRAFT_300174 [	0.971	0.043	0.734	3e-69

>gi|242011206|ref|XP_002426346.1| transformation/transcription domain-associated protein, putative [Pediculus humanus corporis] gi|212510423|gb|EEB13608.1| transformation/transcription domain-associated protein, putative [Pediculus humanus corporis]

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 131/173 (75%), Positives = 146/173 (84%), Gaps = 5/173 (2%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AII FGKIARKH+LT VCL SL R+YTIPSVPIVDCF+KIRQQVKCYLQM+ + GKN+LQ
Sbjct: 2939 AIIHFGKIARKHNLTGVCLGSLSRIYTIPSVPIVDCFQKIRQQVKCYLQMSTVSGKNELQ 2998

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            +GLEVIE TNLKY TKEMTAEFYALKGMLLAQIGRS +ANKAFSAAVQMHD +VKAWALW
Sbjct: 2999 QGLEVIESTNLKYFTKEMTAEFYALKGMLLAQIGRSDDANKAFSAAVQMHDTLVKAWALW 3058

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
            GDY+E  FTN        N+  GV A+TCF+HACRHQ ES SRKYLAKV ++ 
Sbjct: 3059 GDYLEQIFTN-----DFSNISYGVQAITCFLHACRHQNESKSRKYLAKVLWLL 3106

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854902|ref|XP_003702959.1| PREDICTED: transformation/transcription domain-associated protein isoform 2 [Megachile rotundata]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/173 (73%), Positives = 147/173 (84%), Gaps = 5/173 (2%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AII FGKIARKH+L  VCLDSL R+YTIPSVPIVDCF+KIRQQVKCYLQMA++ GKN+LQ
Sbjct: 2933 AIIHFGKIARKHNLCGVCLDSLSRIYTIPSVPIVDCFQKIRQQVKCYLQMASVSGKNELQ 2992

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            EGLEVIE TNL+Y TKEMTAEFYALKGMLL+QIGRS +ANKAFSAAVQ+HD +VKAWALW
Sbjct: 2993 EGLEVIESTNLRYFTKEMTAEFYALKGMLLSQIGRSDDANKAFSAAVQLHDTLVKAWALW 3052

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
            GDY+E  FT       A  + +G+ A+TCF+HACRHQ ES SRKYLAKV ++ 
Sbjct: 3053 GDYLEHIFTR-----DARQISIGISAITCFLHACRHQNESKSRKYLAKVLWLL 3100

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854900|ref|XP_003702958.1| PREDICTED: transformation/transcription domain-associated protein isoform 1 [Megachile rotundata]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/173 (73%), Positives = 147/173 (84%), Gaps = 5/173 (2%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AII FGKIARKH+L  VCLDSL R+YTIPSVPIVDCF+KIRQQVKCYLQMA++ GKN+LQ
Sbjct: 2938 AIIHFGKIARKHNLCGVCLDSLSRIYTIPSVPIVDCFQKIRQQVKCYLQMASVSGKNELQ 2997

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            EGLEVIE TNL+Y TKEMTAEFYALKGMLL+QIGRS +ANKAFSAAVQ+HD +VKAWALW
Sbjct: 2998 EGLEVIESTNLRYFTKEMTAEFYALKGMLLSQIGRSDDANKAFSAAVQLHDTLVKAWALW 3057

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
            GDY+E  FT       A  + +G+ A+TCF+HACRHQ ES SRKYLAKV ++ 
Sbjct: 3058 GDYLEHIFTR-----DARQISIGISAITCFLHACRHQNESKSRKYLAKVLWLL 3105

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021027|ref|XP_003694376.1| PREDICTED: LOW QUALITY PROTEIN: transformation/transcription domain-associated protein-like [Apis florea]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/173 (73%), Positives = 147/173 (84%), Gaps = 5/173 (2%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AII FGKIARKH+L  VCLDSL R+YTIPSVPIVDCF+KIRQQVKCYLQMA++ GKN+LQ
Sbjct: 2935 AIIHFGKIARKHNLCGVCLDSLSRIYTIPSVPIVDCFQKIRQQVKCYLQMASVSGKNELQ 2994

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            EGLEVIE TNL+Y TKEMTAEFYALKGMLL+QIGRS +ANKAFSAAVQ+HD +VKAWALW
Sbjct: 2995 EGLEVIESTNLRYFTKEMTAEFYALKGMLLSQIGRSDDANKAFSAAVQLHDTLVKAWALW 3054

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
            GDY+E  FT       A  + +G+ A+TCF+HACRHQ ES SRKYLAKV ++ 
Sbjct: 3055 GDYLEHIFTR-----DARQISIGISAITCFLHACRHQNESKSRKYLAKVLWLL 3102

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66523982|ref|XP_393981.2| PREDICTED: transformation/transcription domain-associated protein isoform 1 [Apis mellifera]

 Score =  271 bits (694), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 128/173 (73%), Positives = 147/173 (84%), Gaps = 5/173 (2%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AII FGKIARKH+L  VCLDSL R+YTIPSVPIVDCF+KIRQQVKCYLQMA++ GKN+LQ
Sbjct: 2935 AIIHFGKIARKHNLCGVCLDSLSRIYTIPSVPIVDCFQKIRQQVKCYLQMASVSGKNELQ 2994

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            EGLEVIE TNL+Y TKEMTAEFYALKGMLL+QIGRS +ANKAFSAAVQ+HD +VKAWALW
Sbjct: 2995 EGLEVIESTNLRYFTKEMTAEFYALKGMLLSQIGRSDDANKAFSAAVQLHDTLVKAWALW 3054

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
            GDY+E  FT       A  + +G+ A+TCF+HACRHQ ES SRKYLAKV ++ 
Sbjct: 3055 GDYLEHIFTR-----DARQISIGISAITCFLHACRHQNESKSRKYLAKVLWLL 3102

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397835|ref|XP_003485007.1| PREDICTED: transformation/transcription domain-associated protein-like isoform 1 [Bombus impatiens] gi|350397846|ref|XP_003485008.1| PREDICTED: transformation/transcription domain-associated protein-like isoform 2 [Bombus impatiens]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/173 (73%), Positives = 147/173 (84%), Gaps = 5/173 (2%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AII FGKIARKH+L  VCLDSL ++YTIPSVPIVDCF+KIRQQVKCYLQMA++ GKN+LQ
Sbjct: 2936 AIIHFGKIARKHNLCGVCLDSLSKIYTIPSVPIVDCFQKIRQQVKCYLQMASVSGKNELQ 2995

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            EGLEVIE TNL+Y TKEMTAEFYALKGMLL+QIGRS +ANKAFSAAVQ+HD +VKAWALW
Sbjct: 2996 EGLEVIESTNLRYFTKEMTAEFYALKGMLLSQIGRSDDANKAFSAAVQLHDTLVKAWALW 3055

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
            GDY+E  FT       A  + +G+ A+TCF+HACRHQ ES SRKYLAKV ++ 
Sbjct: 3056 GDYLEHIFTR-----DARQISIGISAITCFLHACRHQNESKSRKYLAKVLWLL 3103

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724340|ref|XP_003400540.1| PREDICTED: transformation/transcription domain-associated protein-like isoform 1 [Bombus terrestris] gi|340724342|ref|XP_003400541.1| PREDICTED: transformation/transcription domain-associated protein-like isoform 2 [Bombus terrestris]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/173 (73%), Positives = 147/173 (84%), Gaps = 5/173 (2%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AII FGKIARKH+L  VCLDSL ++YTIPSVPIVDCF+KIRQQVKCYLQMA++ GKN+LQ
Sbjct: 2936 AIIHFGKIARKHNLCGVCLDSLSKIYTIPSVPIVDCFQKIRQQVKCYLQMASVSGKNELQ 2995

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            EGLEVIE TNL+Y TKEMTAEFYALKGMLL+QIGRS +ANKAFSAAVQ+HD +VKAWALW
Sbjct: 2996 EGLEVIESTNLRYFTKEMTAEFYALKGMLLSQIGRSDDANKAFSAAVQLHDTLVKAWALW 3055

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
            GDY+E  FT       A  + +G+ A+TCF+HACRHQ ES SRKYLAKV ++ 
Sbjct: 3056 GDYLEHIFTR-----DARQISIGISAITCFLHACRHQNESKSRKYLAKVLWLL 3103

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480161|ref|XP_001607204.2| PREDICTED: transformation/transcription domain-associated protein-like [Nasonia vitripennis]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/173 (73%), Positives = 147/173 (84%), Gaps = 5/173 (2%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AII FGKIARK +L  VCLDSL R+YTIPSVPIVDCF+KIRQQVKCYLQMA++ GKN+LQ
Sbjct: 2952 AIIHFGKIARKQNLCGVCLDSLSRIYTIPSVPIVDCFQKIRQQVKCYLQMASVSGKNELQ 3011

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            EGLEVIE TNLKY TKEMTAEFYALKGMLL+QIGRS +ANKAFSAAVQ+HD +VKAWALW
Sbjct: 3012 EGLEVIESTNLKYFTKEMTAEFYALKGMLLSQIGRSDDANKAFSAAVQLHDTLVKAWALW 3071

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
            GDY+E+ FT       A  + +GV A+TCF+H+CRHQ ES SRKYLAKV ++ 
Sbjct: 3072 GDYLESIFTR-----DARQISIGVSAITCFLHSCRHQNESKSRKYLAKVLWLL 3119

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405953136|gb|EKC20853.1| Transformation/transcription domain-associated protein [Crassostrea gigas]

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 130/173 (75%), Positives = 142/173 (82%), Gaps = 6/173 (3%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AII FGKIARKH LT VCLDSL R++TIPSVPIVDCF+KIRQQVKCYLQMA   GKN+LQ
Sbjct: 2693 AIIHFGKIARKHGLTGVCLDSLSRIHTIPSVPIVDCFQKIRQQVKCYLQMAGTMGKNELQ 2752

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            EGLEVIE TNLKY TKE TAEFYALKGM LAQIGRS +ANKAFSAAVQMHD +VKAWALW
Sbjct: 2753 EGLEVIESTNLKYFTKEFTAEFYALKGMFLAQIGRSDDANKAFSAAVQMHDTLVKAWALW 2812

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
            GDY+E+ FT            LGV A+TCF+HACRHQ ES SRKYLAKV ++ 
Sbjct: 2813 GDYLESVFTKEK------KTELGVSAITCFLHACRHQNESKSRKYLAKVLWLL 2859

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|321479245|gb|EFX90201.1| hypothetical protein DAPPUDRAFT_300174 [Daphnia pulex]

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/173 (73%), Positives = 145/173 (83%), Gaps = 5/173 (2%)

Query: 1    AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
            AII FGK+ARKH+LT VCLDSL R+Y+IPSVPIVDCF+KIRQQVKCYLQ A + GKN+LQ
Sbjct: 3011 AIIHFGKVARKHNLTGVCLDSLARIYSIPSVPIVDCFQKIRQQVKCYLQAANVLGKNELQ 3070

Query: 61   EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
            EGLEVIE TNLKY  KEMTAE YALKGMLLAQIGR+ +ANKAFSAAVQMHD +VKAWALW
Sbjct: 3071 EGLEVIESTNLKYFAKEMTAELYALKGMLLAQIGRADDANKAFSAAVQMHDTLVKAWALW 3130

Query: 121  GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDYIF 173
            GD++E  FT  S      N+ +GV A+TCF+HACRHQ ES SRKYLAKV ++ 
Sbjct: 3131 GDHLEQVFTKDS-----RNIGIGVSAITCFLHACRHQNESKSRKYLAKVLWLL 3178

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
MGI|MGI:2153272	2565	Trrap "transformation/transcri	0.942	0.063	0.704	6.9e-58
RGD|1305446	3848	Trrap "transformation/transcri	0.942	0.042	0.704	1.2e-57
UNIPROTKB|F1RFK3	3563	TRRAP "Uncharacterized protein	0.942	0.045	0.704	2.3e-57
UNIPROTKB|H0Y4W2	3588	TRRAP "Transformation/transcri	0.942	0.045	0.704	2.3e-57
UNIPROTKB|I3LTJ6	3588	TRRAP "Uncharacterized protein	0.942	0.045	0.704	2.3e-57
UNIPROTKB|E1BRF2	3815	TRRAP "Uncharacterized protein	0.942	0.042	0.704	2.5e-57
UNIPROTKB|E1C796	3819	TRRAP "Uncharacterized protein	0.942	0.042	0.704	2.5e-57
UNIPROTKB|E1BKJ5	3831	TRRAP "Uncharacterized protein	0.942	0.042	0.704	2.5e-57
UNIPROTKB|J9NV05	3847	TRRAP "Uncharacterized protein	0.942	0.042	0.704	2.5e-57
UNIPROTKB|F2Z2U4	3847	TRRAP "Transformation/transcri	0.942	0.042	0.704	2.5e-57

MGI|MGI:2153272 Trrap "transformation/transcription domain-associated protein" [Mus musculus (taxid:10090)]

 Score = 611 (220.1 bits), Expect = 6.9e-58, P = 6.9e-58
 Identities = 119/169 (70%), Positives = 138/169 (81%)

Query:     1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
             AIIQ+GKIARK  L +V LD L R++TIP+VPIVDCF+KIRQQVKCYLQ+A + GKN+  
Sbjct:  1728 AIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECM 1787

Query:    61 EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
             +GLEVIE TNLKY TKEMTAEFYALKGM LAQI +S EANKAFSAAVQMHDV+VKAWA+W
Sbjct:  1788 QGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMW 1847

Query:   121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKV 169
             GDY+E+ F           + LGV A+TC++HACRHQ ES SRKYLAKV
Sbjct:  1848 GDYLESIFVKER------QLHLGVSAITCYLHACRHQNESKSRKYLAKV 1890

GO:0000123 "histone acetyltransferase complex" evidence=TAS

GO:0003712 "transcription cofactor activity" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IMP

GO:0016568 "chromatin modification" evidence=IEA

GO:0016578 "histone deubiquitination" evidence=ISO

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0030914 "STAGA complex" evidence=ISO

GO:0033276 "transcription factor TFTC complex" evidence=ISO

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=ISO

GO:0043967 "histone H4 acetylation" evidence=ISO

GO:0043968 "histone H2A acetylation" evidence=ISO

RGD|1305446 Trrap "transformation/transcription domain-associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 611 (220.1 bits), Expect = 1.2e-57, P = 1.2e-57
 Identities = 119/169 (70%), Positives = 138/169 (81%)

Query:     1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
             AIIQ+GKIARK  L +V LD L R++TIP+VPIVDCF+KIRQQVKCYLQ+A + GKN+  
Sbjct:  3011 AIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECM 3070

Query:    61 EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
             +GLEVIE TNLKY TKEMTAEFYALKGM LAQI +S EANKAFSAAVQMHDV+VKAWA+W
Sbjct:  3071 QGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMW 3130

Query:   121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKV 169
             GDY+E+ F           + LGV A+TC++HACRHQ ES SRKYLAKV
Sbjct:  3131 GDYLESIFVKER------QLHLGVSAITCYLHACRHQNESKSRKYLAKV 3173

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|F1RFK3 TRRAP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 608 (219.1 bits), Expect = 2.3e-57, P = 2.3e-57
 Identities = 119/169 (70%), Positives = 137/169 (81%)

Query:     1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
             AIIQ+GKIARK  L +V LD L R++TIP+VPIVDCF+KIRQQVKCYLQ+A + GKN+  
Sbjct:  2743 AIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECM 2802

Query:    61 EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
             +GLEVIE TNLKY TKEMTAEFYALKGM LAQI +S EANKAFSAAVQMHDV+VKAWA+W
Sbjct:  2803 QGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMW 2862

Query:   121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKV 169
             GDY+E  F           + LGV A+TC++HACRHQ ES SRKYLAKV
Sbjct:  2863 GDYLENIFVKER------QLHLGVSAITCYLHACRHQNESKSRKYLAKV 2905

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|H0Y4W2 TRRAP "Transformation/transcription domain-associated protein" [Homo sapiens (taxid:9606)]

 Score = 608 (219.1 bits), Expect = 2.3e-57, P = 2.3e-57
 Identities = 119/169 (70%), Positives = 137/169 (81%)

Query:     1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
             AIIQ+GKIARK  L +V LD L R++TIP+VPIVDCF+KIRQQVKCYLQ+A + GKN+  
Sbjct:  2751 AIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECM 2810

Query:    61 EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
             +GLEVIE TNLKY TKEMTAEFYALKGM LAQI +S EANKAFSAAVQMHDV+VKAWA+W
Sbjct:  2811 QGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMW 2870

Query:   121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKV 169
             GDY+E  F           + LGV A+TC++HACRHQ ES SRKYLAKV
Sbjct:  2871 GDYLENIFVKER------QLHLGVSAITCYLHACRHQNESKSRKYLAKV 2913

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|I3LTJ6 TRRAP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 608 (219.1 bits), Expect = 2.3e-57, P = 2.3e-57
 Identities = 119/169 (70%), Positives = 137/169 (81%)

Query:     1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
             AIIQ+GKIARK  L +V LD L R++TIP+VPIVDCF+KIRQQVKCYLQ+A + GKN+  
Sbjct:  2750 AIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECM 2809

Query:    61 EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
             +GLEVIE TNLKY TKEMTAEFYALKGM LAQI +S EANKAFSAAVQMHDV+VKAWA+W
Sbjct:  2810 QGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMW 2869

Query:   121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKV 169
             GDY+E  F           + LGV A+TC++HACRHQ ES SRKYLAKV
Sbjct:  2870 GDYLENIFVKER------QLHLGVSAITCYLHACRHQNESKSRKYLAKV 2912

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0016578 "histone deubiquitination" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|E1BRF2 TRRAP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 608 (219.1 bits), Expect = 2.5e-57, P = 2.5e-57
 Identities = 119/169 (70%), Positives = 137/169 (81%)

Query:     1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
             AIIQ+GKIARK  L +V LD L R++TIP+VPIVDCF+KIRQQVKCYLQ+A + GKN+  
Sbjct:  2996 AIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECM 3055

Query:    61 EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
             +GLEVIE TNLKY TKEMTAEFYALKGM LAQI +S EANKAFSAAVQMHDV+VKAWA+W
Sbjct:  3056 QGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMW 3115

Query:   121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKV 169
             GDY+E  F           + LGV A+TC++HACRHQ ES SRKYLAKV
Sbjct:  3116 GDYLENIFVKER------QLHLGVSAITCYLHACRHQNESKSRKYLAKV 3158

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|E1C796 TRRAP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 608 (219.1 bits), Expect = 2.5e-57, P = 2.5e-57
 Identities = 119/169 (70%), Positives = 137/169 (81%)

Query:     1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
             AIIQ+GKIARK  L +V LD L R++TIP+VPIVDCF+KIRQQVKCYLQ+A + GKN+  
Sbjct:  3000 AIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECM 3059

Query:    61 EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
             +GLEVIE TNLKY TKEMTAEFYALKGM LAQI +S EANKAFSAAVQMHDV+VKAWA+W
Sbjct:  3060 QGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMW 3119

Query:   121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKV 169
             GDY+E  F           + LGV A+TC++HACRHQ ES SRKYLAKV
Sbjct:  3120 GDYLENIFVKER------QLHLGVSAITCYLHACRHQNESKSRKYLAKV 3162

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA

GO:0016578 "histone deubiquitination" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

UNIPROTKB|E1BKJ5 TRRAP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 608 (219.1 bits), Expect = 2.5e-57, P = 2.5e-57
 Identities = 119/169 (70%), Positives = 137/169 (81%)

Query:     1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
             AIIQ+GKIARK  L +V LD L R++TIP+VPIVDCF+KIRQQVKCYLQ+A + GKN+  
Sbjct:  3012 AIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECM 3071

Query:    61 EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
             +GLEVIE TNLKY TKEMTAEFYALKGM LAQI +S EANKAFSAAVQMHDV+VKAWA+W
Sbjct:  3072 QGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMW 3131

Query:   121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKV 169
             GDY+E  F           + LGV A+TC++HACRHQ ES SRKYLAKV
Sbjct:  3132 GDYLENIFVKER------QLHLGVSAITCYLHACRHQNESKSRKYLAKV 3174

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0033276 "transcription factor TFTC complex" evidence=IEA

GO:0030914 "STAGA complex" evidence=IEA

GO:0016578 "histone deubiquitination" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|J9NV05 TRRAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 608 (219.1 bits), Expect = 2.5e-57, P = 2.5e-57
 Identities = 119/169 (70%), Positives = 137/169 (81%)

Query:     1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
             AIIQ+GKIARK  L +V LD L R++TIP+VPIVDCF+KIRQQVKCYLQ+A + GKN+  
Sbjct:  3010 AIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECM 3069

Query:    61 EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
             +GLEVIE TNLKY TKEMTAEFYALKGM LAQI +S EANKAFSAAVQMHDV+VKAWA+W
Sbjct:  3070 QGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMW 3129

Query:   121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKV 169
             GDY+E  F           + LGV A+TC++HACRHQ ES SRKYLAKV
Sbjct:  3130 GDYLENIFVKER------QLHLGVSAITCYLHACRHQNESKSRKYLAKV 3172

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|F2Z2U4 TRRAP "Transformation/transcription domain-associated protein" [Homo sapiens (taxid:9606)]

 Score = 608 (219.1 bits), Expect = 2.5e-57, P = 2.5e-57
 Identities = 119/169 (70%), Positives = 137/169 (81%)

Query:     1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQ 60
             AIIQ+GKIARK  L +V LD L R++TIP+VPIVDCF+KIRQQVKCYLQ+A + GKN+  
Sbjct:  3010 AIIQYGKIARKQGLVNVALDILSRIHTIPTVPIVDCFQKIRQQVKCYLQLAGVMGKNECM 3069

Query:    61 EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120
             +GLEVIE TNLKY TKEMTAEFYALKGM LAQI +S EANKAFSAAVQMHDV+VKAWA+W
Sbjct:  3070 QGLEVIESTNLKYFTKEMTAEFYALKGMFLAQINKSEEANKAFSAAVQMHDVLVKAWAMW 3129

Query:   121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKV 169
             GDY+E  F           + LGV A+TC++HACRHQ ES SRKYLAKV
Sbjct:  3130 GDYLENIFVKER------QLHLGVSAITCYLHACRHQNESKSRKYLAKV 3172

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y4A5	TRRAP_HUMAN	No assigned EC number	0.6878	0.9653	0.0432	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
pfam02259	350	pfam02259, FAT, FAT domain	5e-30

>gnl|CDD|216950 pfam02259, FAT, FAT domain

 Score =  111 bits (280), Expect = 5e-30
 Identities = 45/198 (22%), Positives = 77/198 (38%), Gaps = 31/198 (15%)

Query: 2   IIQFGKIARKHHLTSVCLDSLFRLYT------IPSVPI------------VDCFEKIRQQ 43
            ++F  +ARK    S+   +L +L T      +P+V I             +  +K+R+ 
Sbjct: 152 WLKFANLARKSGRFSLAEKALLKLLTYDTREDLPNVVIAYAKYLWAKGQQQEAIQKLREF 211

Query: 44  VKCYLQMAA-LDGKNQLQEGLEVI--EHTNLKYLTKEMTAEFYALKGMLLAQI------G 94
           V CYL         ++L  GL       TNL+Y   ++ A  +   G  L ++      G
Sbjct: 212 VSCYLSKPVGSSSDSELLLGLTYEVISSTNLEYFEAKLLARCFLKLGEWLDKLQMNWGQG 271

Query: 95  RSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFT-NPSPPGSAPNMVLG--VFAVTCFM 151
           +  E  +A+  AVQ  D   KAW  W          +   P +   +     V AV  ++
Sbjct: 272 KKDEILQAYRTAVQFDDQWYKAWHSWALANFEVLQLDEQEPLAPSELRSEYVVPAVEGYL 331

Query: 152 HACRHQKESMSRKYLAKV 169
            +     E  S + L ++
Sbjct: 332 KSLSLSSEK-SLQDLLRL 348

The FAT domain is named after FRAP, ATM and TRRAP. Length = 350

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG0889|consensus	3550		100.0
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	99.88
COG5032	2105	TEL1 Phosphatidylinositol kinase and protein kinas	98.48
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.35
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.13
PRK15359	144	type III secretion system chaperone protein SscB;	97.85
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.61
PRK11189	296	lipoprotein NlpI; Provisional	97.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.6
PF13428	44	TPR_14: Tetratricopeptide repeat	97.33
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.31
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.26
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.24
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.23
PRK11189	296	lipoprotein NlpI; Provisional	97.2
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.19
PRK15359	144	type III secretion system chaperone protein SscB;	97.13
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.11
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.1
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.06
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.91
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.88
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.85
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.83
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.8
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.79
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.78
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.77
KOG1173|consensus	611		96.7
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.63
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.62
PF13371	73	TPR_9: Tetratricopeptide repeat	96.6
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.53
KOG0553|consensus	304		96.48
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.44
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.41
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.37
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.21
PRK12370	553	invasion protein regulator; Provisional	96.16
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.03
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.88
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.88
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.84
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.76
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.75
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.74
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.73
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.67
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	95.67
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	95.65
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	95.62
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.44
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.37
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	95.35
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.22
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.2
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	95.16
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	95.13
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.09
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	95.02
PRK10803	263	tol-pal system protein YbgF; Provisional	94.81
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	94.61
PF13371	73	TPR_9: Tetratricopeptide repeat	94.49
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.31
KOG2076|consensus	895		94.17
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.11
KOG4234|consensus	271		94.07
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	94.02
KOG4162|consensus	799		93.95
PRK12370	553	invasion protein regulator; Provisional	93.92
KOG4626|consensus	966		93.91
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	93.89
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.72
KOG4626|consensus	966		93.29
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	92.58
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	92.37
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	92.32
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.17
PLN02789	320	farnesyltranstransferase	91.93
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	91.5
KOG0890|consensus	2382		91.39
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	91.33
PLN02789	320	farnesyltranstransferase	91.29
KOG1126|consensus	638		91.08
KOG1156|consensus	700		90.84
KOG0548|consensus	539		90.49
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	90.27
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.23
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	88.63
PRK11906	458	transcriptional regulator; Provisional	88.45
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	88.34
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	87.54
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	87.12
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	87.03
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	86.33
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	86.32
KOG0543|consensus	397		86.06
PF12688	120	TPR_5: Tetratrico peptide repeat	84.97
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	84.56
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	84.48
KOG1125|consensus	579		84.24
PRK10803	263	tol-pal system protein YbgF; Provisional	83.62
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	83.26
KOG3824|consensus	472		82.9
PHA02537	230	M terminase endonuclease subunit; Provisional	82.79
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	82.07
KOG2076|consensus	895		81.5
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	81.44
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	80.88
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	80.82

>KOG0889|consensus

Probab=100.00  E-value=1.8e-55  Score=452.44  Aligned_cols=163  Identities=50%  Similarity=0.875  Sum_probs=159.4

Q ss_pred             ChhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         1 ~~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ++|+|||+|||||+++||++.|++|||+|+|||+|||+|+|||+|||+|+     ++|+++|||||++|||+||+++|+|
T Consensus      2738 ~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~-----~~e~~~gLevi~sTNl~yF~~~q~a 2812 (3550)
T KOG0889|consen 2738 AINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQN-----KNELKTGLEVIESTNLMYFSDRQKA 2812 (3550)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHhcccHHHHhhHHHH
Confidence            48999999999999999999999999999999999999999999999998     6899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKES  160 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~  160 (173)
                      |||+|||+|+++||+.||||++|++|||+|++++|+|++||+|+|++|.++|     .++++|.+|++|||||+++++++
T Consensus      2813 eff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~-----~ni~~a~~avsCyLqA~~~~~~s 2887 (3550)
T KOG0889|consen 2813 EFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEP-----VNISFACNAVSCYLQAARLYNSS 2887 (3550)
T ss_pred             HHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC-----cccHHHHHHHHHHHHHhccccch
Confidence            9999999999999999999999999999999999999999999999999997     45899999999999999999999


Q ss_pred             hhhhhHHHHhhcC
Q psy5931         161 MSRKYLAKVDYIF  173 (173)
Q Consensus       161 k~Rk~laRiLWLL  173 (173)
                      |+||||+||||||
T Consensus      2888 kaRk~iakvLwLl 2900 (3550)
T KOG0889|consen 2888 KARKLIAKVLWLL 2900 (3550)
T ss_pred             hhHHHHHHHHHHH
Confidence            9999999999996

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=99.88  E-value=4.2e-22  Score=168.46  Aligned_cols=169  Identities=25%  Similarity=0.368  Sum_probs=149.0

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcC--------CCCCcH------------HHHHHHHHHHHHHHhhhhccC-ChhHHH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYT--------IPSVPI------------VDCFEKIRQQVKCYLQMAALD-GKNQLQ   60 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~--------lp~i~v------------~daF~KlrEq~kc~l~~~~~~-~~~el~   60 (173)
                      .++||++|||+|..++|...|.++..        .|.|.+            .+|+.+|++.++|+++..... ...++.
T Consensus       149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~  228 (352)
T PF02259_consen  149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELK  228 (352)
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHh
Confidence            58999999999999999999999998        788888            999999999999988864221 223455


Q ss_pred             HHH----HHhhhccccCCCchhhHHHHHHHHHHHHHh------CCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCC
Q psy5931          61 EGL----EVIEHTNLKYLTKEMTAEFYALKGMLLAQI------GRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTN  130 (173)
Q Consensus        61 ~gL----~vi~~tnl~~F~~~qkaE~~~LKG~fl~~L------g~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~  130 (173)
                      .|+    +++++++++.+.++++++.|.+.|.+...+      +..+++.+.|..|++++|+..|+|..||.++|+++..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~  308 (352)
T PF02259_consen  229 SGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES  308 (352)
T ss_pred             hccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence            554    999999999999999999999999999999      8899999999999999999999999999999999987


Q ss_pred             CCCCCC----CchhhhHHHHHHHHHHHchhCCCchhhhhHHHHhh
Q psy5931         131 PSPPGS----APNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDY  171 (173)
Q Consensus       131 ~~~~~~----~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~laRiLW  171 (173)
                      ++....    +....++..||.||++|+++ ++..++..++|+||
T Consensus       309 ~~~~~~~~~~~~~~~~~~~ai~~y~~al~~-~~~~~~~~~~RlLt  352 (352)
T PF02259_consen  309 DPREKEESSQEDRSEYLEQAIEGYLKALSL-GSKYVRQDLPRLLT  352 (352)
T ss_pred             hhhcccccchhHHHHHHHHHHHHHHHHHhh-CCCchHHHhhHhcC
Confidence            763211    24678999999999999999 55599999999997

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]

Probab=98.48  E-value=2.4e-07  Score=97.70  Aligned_cols=119  Identities=25%  Similarity=0.461  Sum_probs=104.6

Q ss_pred             ChhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         1 ~~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ++++|+++||+|+.++   +.+.+++.+|.+.++++|.+++++..|+++      +.++..|+++.+.+|+++|..-|++
T Consensus      1407 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 1477 (2105)
T COG5032        1407 SINSFASVARKHFLPD---NQLKKIYQLSNILISEAFLLLRYLLLCRLG------RRELKAGLNVWNLTNLELFSDIQES 1477 (2105)
T ss_pred             HHHHHHHHHHHhcCcH---HHHHHHhhhhhhhcchHHHHHHHHHHHHhh------hHHHHHHHHhhcccchhHHHHHHHH
Confidence            3689999999999999   999999999999999999999999999998      4789999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKES  160 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~  160 (173)
                      +++                                   +||.+.+.++...+     ....+...++.||+++.......
T Consensus      1478 ~~~-----------------------------------~~~~~~~~~~~~~~-----~~~~~~s~~~~~~~~~~~~l~~~ 1517 (2105)
T COG5032        1478 EFF-----------------------------------EWGKNLKLLSIIPP-----IEEIFLSNALSCYLQVKDLLKKL 1517 (2105)
T ss_pred             HHH-----------------------------------HhhhhhHHhccCCc-----hhHHHHhhhccchHHHHHHHHhh
Confidence            998                                   89998888887665     56778888999999988766655


Q ss_pred             hhhhhHHH
Q psy5931         161 MSRKYLAK  168 (173)
Q Consensus       161 k~Rk~laR  168 (173)
                      ..+....+
T Consensus      1518 ~~~~~~~~ 1525 (2105)
T COG5032        1518 NLFELLGS 1525 (2105)
T ss_pred             HHHHHhhh
Confidence            55555544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.35  E-value=5.4e-06  Score=79.85  Aligned_cols=137  Identities=13%  Similarity=0.080  Sum_probs=113.0

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      +..+|++....|-+|.+...|.++..+ .-.-..|+.   .-+.++.+.      +.+.+++..++..--   ..+..++
T Consensus        89 ~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~---~~a~~L~~~------~~~eeA~~~~~~~l~---~~p~~~~  155 (694)
T PRK15179         89 QVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFI---LMLRGVKRQ------QGIEAGRAEIELYFS---GGSSSAR  155 (694)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHH---HHHHHHHHh------ccHHHHHHHHHHHhh---cCCCCHH
Confidence            567999999999999999999999887 333444443   335566663      568999999988766   7899999


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCch
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESM  161 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k  161 (173)
                      ...++|+.+.++|++|||...|..++.-+|..+++|.+||+-+..+..             ...|+.+|.+|+..- ...
T Consensus       156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-------------~~~A~~~~~~a~~~~-~~~  221 (694)
T PRK15179        156 EILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-------------LWRARDVLQAGLDAI-GDG  221 (694)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhh-Ccc
Confidence            999999999999999999999999999888999999999999988863             355999999999873 444


Q ss_pred             hhhh
Q psy5931         162 SRKY  165 (173)
Q Consensus       162 ~Rk~  165 (173)
                      +|||
T Consensus       222 ~~~~  225 (694)
T PRK15179        222 ARKL  225 (694)
T ss_pred             hHHH
Confidence            4553

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.13  E-value=8.5e-06  Score=54.29  Aligned_cols=67  Identities=21%  Similarity=0.068  Sum_probs=59.6

Q ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      |.|+.+...|..+...|++++|-+.|..|++++|+.+.+|...|.-+..+-.            --..|+.+|.+|+.+
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~------------~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK------------DYEEAIEDFEKALKL   67 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT------------HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc------------cHHHHHHHHHHHHHc
Confidence            5689999999999999999999999999999999999999999998777631            136799999999876

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.85  E-value=8e-05  Score=57.60  Aligned_cols=93  Identities=8%  Similarity=-0.072  Sum_probs=76.2

Q ss_pred             HHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931          43 QVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD  122 (173)
Q Consensus        43 q~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~  122 (173)
                      .+.++.++      +++.++++.+...--   ..+..++.+..+|..+.++|++++|...|..|+.++|..+.+|..+|.
T Consensus        30 ~g~~~~~~------g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~  100 (144)
T PRK15359         30 SGYASWQE------GDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGV  100 (144)
T ss_pred             HHHHHHHc------CCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            36666663      567778777766432   245578999999999999999999999999999999999999999999


Q ss_pred             hHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931         123 YMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       123 ~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .+..+-.             -..|+.+|-+|+++.
T Consensus       101 ~l~~~g~-------------~~eAi~~~~~Al~~~  122 (144)
T PRK15359        101 CLKMMGE-------------PGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHcCC-------------HHHHHHHHHHHHHhC
Confidence            8877632             245999999999874

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.61  E-value=0.00095  Score=51.09  Aligned_cols=94  Identities=20%  Similarity=0.229  Sum_probs=76.0

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ..+|++.-..|=++-++..|.++-.-+.=+....+.++|- ++++++.      +++.+++..++...    .++.++..
T Consensus        52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L-A~~~~~~------~~~d~Al~~L~~~~----~~~~~~~~  120 (145)
T PF09976_consen   52 LQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL-ARILLQQ------GQYDEALATLQQIP----DEAFKALA  120 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH-HHHHHHc------CCHHHHHHHHHhcc----CcchHHHH
Confidence            4678899999999999999999877542333445667764 8899874      67999999997744    34557788


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHH
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAV  107 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Av  107 (173)
                      +.++|.++.+.|+.++|-++|..|+
T Consensus       121 ~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  121 AELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999999999885

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.60  E-value=0.00029  Score=60.41  Aligned_cols=62  Identities=26%  Similarity=0.389  Sum_probs=53.6

Q ss_pred             HHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931          64 EVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF  128 (173)
Q Consensus        64 ~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f  128 (173)
                      ++|+...+   ++++.++.|..+|.++.++|+.++|...|..|++++|+.+.+|...|..+..+-
T Consensus        51 ~~l~~~~~---~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g  112 (296)
T PRK11189         51 QILASRDL---TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG  112 (296)
T ss_pred             HHHccccC---CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence            46655555   788999999999999999999999999999999999999999999998876653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.60  E-value=0.00037  Score=61.66  Aligned_cols=109  Identities=14%  Similarity=0.104  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931          39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA  118 (173)
Q Consensus        39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~  118 (173)
                      ++++++...+..      .++.++++..+..--   ..+..++.+..+|..+.++|++++|...|..|++++|..+.+|.
T Consensus         4 ~l~~~a~~a~~~------~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~   74 (356)
T PLN03088          4 DLEDKAKEAFVD------DDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL   74 (356)
T ss_pred             HHHHHHHHHHHc------CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH
Confidence            467778887773      567788887766643   34556889999999999999999999999999999999999999


Q ss_pred             HHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHH
Q psy5931         119 LWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKV  169 (173)
Q Consensus       119 ~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRi  169 (173)
                      .-|..+.++-.             -..|+.+|-+|+++.. +...+..+.++
T Consensus        75 ~lg~~~~~lg~-------------~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         75 RKGTACMKLEE-------------YQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHHhCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99988877631             3568899999998753 34444444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.33  E-value=0.00042  Score=43.38  Aligned_cols=42  Identities=14%  Similarity=0.255  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD  122 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~  122 (173)
                      +.+..-|..+..+|+.|+|-+.|..+++.+|+.+.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            567778999999999999999999999999999999998875

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.31  E-value=0.0004  Score=40.58  Aligned_cols=33  Identities=27%  Similarity=0.276  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      |+.|..+|..+..+|++++|-..|..|++++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            678999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.26  E-value=0.0015  Score=42.93  Aligned_cols=63  Identities=21%  Similarity=0.232  Sum_probs=50.4

Q ss_pred             HHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH
Q psy5931          43 QVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV  114 (173)
Q Consensus        43 q~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~  114 (173)
                      ++..+++      .+++.++++.++..--.+   +..++.+...|.++.+.|++++|-..|..++..+|+.|
T Consensus         3 ~a~~~~~------~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQ------QGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHH------CTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHH------cCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4666776      367888888888876644   67899999999999999999999999999999988754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.24  E-value=0.0055  Score=57.18  Aligned_cols=111  Identities=13%  Similarity=0.152  Sum_probs=77.6

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY   83 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~   83 (173)
                      ..|.+-...|-++.++..+.+...+. -...+++.   ..+.|+++.      +++.++++.++.. +..  .+..++.+
T Consensus       336 ~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~---~la~~~~~~------g~~~eA~~~~~~a-l~~--~p~~~~~~  402 (615)
T TIGR00990       336 LRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI---KRASMNLEL------GDPDKAEEDFDKA-LKL--NSEDPDIY  402 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH---HHHHHHHHC------CCHHHHHHHHHHH-HHh--CCCCHHHH
Confidence            34455556677788888888865542 12233333   336666663      4566666665543 221  24457899


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      ..+|.++..+|++++|...|..|+.++|..+.+|...|..+.++
T Consensus       403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~  446 (615)
T TIGR00990       403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE  446 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999998888877654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.23  E-value=0.008  Score=46.74  Aligned_cols=131  Identities=11%  Similarity=0.001  Sum_probs=83.1

Q ss_pred             HHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCc
Q psy5931          17 VCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRS   96 (173)
Q Consensus        17 vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~   96 (173)
                      +..+.|++|+..- -....+... ..-+.|+..+      +++.+++..+...--..=.+.+.+..+...|.++.++|++
T Consensus        17 ~~~~~l~~~~~~~-~~~~~a~~~-~~~g~~~~~~------g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~   88 (168)
T CHL00033         17 IVADILLRILPTT-SGEKEAFTY-YRDGMSAQSE------GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH   88 (168)
T ss_pred             cchhhhhHhccCC-chhHHHHHH-HHHHHHHHHc------CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence            3446667775421 111122221 2226666654      3455666555544211112335677889999999999999


Q ss_pred             hHHHHHHHHHHccchhhHHHHHHHHHhHHhhcC---CCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          97 AEANKAFSAAVQMHDVMVKAWALWGDYMEAQFT---NPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        97 deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~---~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ++|.+.|.+|+.++|..+.+|...|...-.+-.   ...  .......+...|+.+|-++.+..
T Consensus        89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g--~~~~A~~~~~~a~~~~~~a~~~~  150 (168)
T CHL00033         89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG--DSEIAEAWFDQAAEYWKQAIALA  150 (168)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc--cHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999998888763321   000  00134556778888888888774

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.20  E-value=0.008  Score=51.50  Aligned_cols=105  Identities=14%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             CChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHH
Q psy5931          13 HLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQ   92 (173)
Q Consensus        13 ~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~   92 (173)
                      +-.|+.+..++++..-......+--.-.-+.+..|..+      .++.+++...+..--   ..+..++.+...|..+..
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~------g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~  110 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL------GLRALARNDFSQALA---LRPDMADAYNYLGIYLTQ  110 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC------CCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHH
Confidence            34567777777765422221111011122334444443      234444443332211   134558899999999999


Q ss_pred             hCCchHHHHHHHHHHccchhhHHHHHHHHHhHHh
Q psy5931          93 IGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEA  126 (173)
Q Consensus        93 Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~  126 (173)
                      +|++|+|...|..|+.++|+.+.+|..=|..+..
T Consensus       111 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~  144 (296)
T PRK11189        111 AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY  144 (296)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999887776543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.19  E-value=0.018  Score=43.88  Aligned_cols=111  Identities=14%  Similarity=0.084  Sum_probs=68.0

Q ss_pred             HHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931           5 FGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY   83 (173)
Q Consensus         5 fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~   83 (173)
                      .|.+....|-++-++..+.+...+ |..+  ++   ....+.++.++      +++.++++..+..-- ....+...+.+
T Consensus        71 la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~---~~~~~~~~~~~------g~~~~A~~~~~~~~~-~~~~~~~~~~~  138 (234)
T TIGR02521        71 LALYYQQLGELEKAEDSFRRALTLNPNNG--DV---LNNYGTFLCQQ------GKYEQAMQQFEQAIE-DPLYPQPARSL  138 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HH---HHHHHHHHHHc------ccHHHHHHHHHHHHh-ccccccchHHH
Confidence            444555555555555555554433 2111  11   12224455543      345556555555421 12234456677


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      ...|..+...|++++|.+.|..+++..|..+.+|..+|......
T Consensus       139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  182 (234)
T TIGR02521       139 ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR  182 (234)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence            77899999999999999999999999998888888888776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.13  E-value=0.012  Score=45.38  Aligned_cols=111  Identities=12%  Similarity=0.042  Sum_probs=85.2

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY   83 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~   83 (173)
                      ..|.+....|-++-++..+.+.-.+. -.-.++.   ...+.++...      +++.++++..+..--   -.+.-++.+
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~---~~lg~~~~~~------g~~~~A~~~y~~Al~---l~p~~~~a~   95 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAH---IALAGTWMML------KEYTTAINFYGHALM---LDASHPEPV   95 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHH---HHHHHHHHHH------hhHHHHHHHHHHHHh---cCCCCcHHH
Confidence            35777888888888888888865542 2223333   4456666663      577788877777664   457789999


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      ...|..+.++|++++|.+.|..|+.+.|+.+..|..=|..+..+
T Consensus        96 ~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         96 YQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998777665543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.11  E-value=0.0048  Score=45.38  Aligned_cols=101  Identities=12%  Similarity=0.024  Sum_probs=76.2

Q ss_pred             HHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHH
Q psy5931          40 IRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWAL  119 (173)
Q Consensus        40 lrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~  119 (173)
                      +...+.++++.      +.+.++++.++..--   ..+...+++...|.++.++|++++|...|..++.++|+.+..|..
T Consensus        20 ~~~~a~~~~~~------~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   90 (135)
T TIGR02552        20 IYALAYNLYQQ------GRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH   90 (135)
T ss_pred             HHHHHHHHHHc------ccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            44667888874      457777777765422   124567899999999999999999999999999999999999988


Q ss_pred             HHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchh
Q psy5931         120 WGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMS  162 (173)
Q Consensus       120 WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~  162 (173)
                      =|......-  +           ...|+.-|-.+.+.+.+...
T Consensus        91 la~~~~~~g--~-----------~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        91 AAECLLALG--E-----------PESALKALDLAIEICGENPE  120 (135)
T ss_pred             HHHHHHHcC--C-----------HHHHHHHHHHHHHhccccch
Confidence            887666553  1           35677788888877654443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.10  E-value=0.00068  Score=39.38  Aligned_cols=33  Identities=30%  Similarity=0.377  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      ++.+.++|.++.++|+.++|.+.|..|++++|+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            578999999999999999999999999999874

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.06  E-value=0.007  Score=38.47  Aligned_cols=94  Identities=17%  Similarity=0.090  Sum_probs=68.1

Q ss_pred             HHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHH
Q psy5931          41 RQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW  120 (173)
Q Consensus        41 rEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~W  120 (173)
                      ...+.++++.      +++.++++.++..-- ..  +...+.+...|.++...|++++|.+.|..++.+.|..+..|..+
T Consensus         4 ~~~a~~~~~~------~~~~~A~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   74 (100)
T cd00189           4 LNLGNLYYKL------GDYDEALEYYEKALE-LD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNL   74 (100)
T ss_pred             HHHHHHHHHH------hcHHHHHHHHHHHHh-cC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence            4567777764      567777777765422 11  11237889999999999999999999999999999999899888


Q ss_pred             HHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931         121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus       121 G~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      |........             -..|...+.++.+.
T Consensus        75 ~~~~~~~~~-------------~~~a~~~~~~~~~~   97 (100)
T cd00189          75 GLAYYKLGK-------------YEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHHHHh-------------HHHHHHHHHHHHcc
Confidence            887665531             23466666665544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.91  E-value=0.018  Score=42.28  Aligned_cols=102  Identities=13%  Similarity=0.094  Sum_probs=76.9

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      +...|..+.+.|-++-|+..+.++..+ |.  -.++.   ...+.|++.+      +++.+++.+++..-- .  .+...
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~---~~la~~~~~~------~~~~~A~~~~~~~~~-~--~p~~~   85 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY--NSRYW---LGLAACCQML------KEYEEAIDAYALAAA-L--DPDDP   85 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCC--cHHHH---HHHHHHHHHH------HHHHHHHHHHHHHHh-c--CCCCh
Confidence            356778888889999999999997664 32  12232   2447788875      567777777765422 1  25568


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW  117 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW  117 (173)
                      +++...|.++...|+.++|.+.|..+++++|..+..+
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        86 RPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            8999999999999999999999999999999877655

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.88  E-value=0.0038  Score=41.28  Aligned_cols=63  Identities=22%  Similarity=0.279  Sum_probs=52.2

Q ss_pred             HHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhC-CchHHHHHHHHHHccch
Q psy5931          40 IRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIG-RSAEANKAFSAAVQMHD  111 (173)
Q Consensus        40 lrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg-~~deA~~~F~~Avql~~  111 (173)
                      ....+.|++++      +++.++++..+..---   .+..++.+..+|..+.++| ++++|-+.|.+|++++|
T Consensus         6 ~~~~g~~~~~~------~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    6 WYNLGQIYFQQ------GDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHT------THHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHc------CCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45678888884      6788888877766542   3556889999999999999 79999999999999987

...

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.85  E-value=0.002  Score=37.03  Aligned_cols=33  Identities=27%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      |+.+...|.++.++|++++|-+.|..|++++|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            688999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.83  E-value=0.023  Score=52.02  Aligned_cols=67  Identities=16%  Similarity=0.194  Sum_probs=49.5

Q ss_pred             HHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          58 QLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        58 el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      ++.+++++++..- +.  .+...+.+...|..+.+.|++++|...|..++.++|..+.+|...|..+.+.
T Consensus       582 ~~~~A~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  648 (899)
T TIGR02917       582 QLKKALAILNEAA-DA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM  648 (899)
T ss_pred             CHHHHHHHHHHHH-Hc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence            4555565555432 11  1334678888899999999999999999999999998888888888877654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.80  E-value=0.017  Score=40.75  Aligned_cols=92  Identities=16%  Similarity=0.079  Sum_probs=66.9

Q ss_pred             hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh---HHHHHHHHHhHHhhcCCCCC
Q psy5931          57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM---VKAWALWGDYMEAQFTNPSP  133 (173)
Q Consensus        57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~---~kaW~~WG~~~d~~f~~~~~  133 (173)
                      +++.++++.++..--.+-..+..++.....|..+.+.|++++|.+.|..+++.+|+.   +.+|...|....++-.    
T Consensus        16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----   91 (119)
T TIGR02795        16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD----   91 (119)
T ss_pred             CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC----
Confidence            456667666655432222334456788889999999999999999999999998875   6788888888765421    


Q ss_pred             CCCCchhhhHHHHHHHHHHHchhCCCch
Q psy5931         134 PGSAPNMVLGVFAVTCFMHACRHQKESM  161 (173)
Q Consensus       134 ~~~~~~~~~~~~Ai~CyLqA~~~~~~~k  161 (173)
                               -..|+.+|-+++..+.+..
T Consensus        92 ---------~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        92 ---------KEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             ---------hHHHHHHHHHHHHHCcCCh
Confidence                     3557888888887755443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.79  E-value=0.014  Score=45.77  Aligned_cols=109  Identities=13%  Similarity=0.006  Sum_probs=73.8

Q ss_pred             HHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931          43 QVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD  122 (173)
Q Consensus        43 q~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~  122 (173)
                      .+.++..      .+++.++++..+..-=..-.++..+..+...|..+.++|++++|.+.|..|++++|..+.+|...|.
T Consensus        41 lg~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         41 DGMSAQA------DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHH------cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3555554      3556677776664421122334567889999999999999999999999999999999999998888


Q ss_pred             hHHhhcCCCC-CCCCCchhhhHHHHHHHHHHHchhC
Q psy5931         123 YMEAQFTNPS-PPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       123 ~~d~~f~~~~-~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .+..+-.... .......+..-..|+.+|-++.+..
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence            7766532110 0001123444566777777777663

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.78  E-value=0.066  Score=45.91  Aligned_cols=29  Identities=14%  Similarity=0.287  Sum_probs=18.8

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCC
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSV   31 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i   31 (173)
                      ..+|.+.+.+|-++-++..+.++...|..
T Consensus        73 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~  101 (389)
T PRK11788         73 LALGNLFRRRGEVDRAIRIHQNLLSRPDL  101 (389)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHhcCCCC
Confidence            34566667777777777777776665543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.77  E-value=0.021  Score=53.35  Aligned_cols=130  Identities=9%  Similarity=-0.014  Sum_probs=95.8

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      +.+|.+....|-++-++..+.+...+. -.-.+++   ...+.+|+.+      +++.+++...+..--   ..+...+.
T Consensus       369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~---~~lg~~~~~~------g~~~~A~~~~~kal~---l~P~~~~~  435 (615)
T TIGR00990       369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIY---YHRAQLHFIK------GEFAQAGKDYQKSID---LDPDFIFS  435 (615)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH---HHHHHHHHHc------CCHHHHHHHHHHHHH---cCccCHHH
Confidence            567888888899999999999876652 1222333   3457778774      456677776665432   12345567


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      +...|.++.++|++++|...|..++..+|+.+.+|...|..+..+-             --..|+.+|-+|+.+..
T Consensus       436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g-------------~~~~A~~~~~~Al~l~p  498 (615)
T TIGR00990       436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN-------------KFDEAIEKFDTAIELEK  498 (615)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc-------------CHHHHHHHHHHHHhcCC
Confidence            8889999999999999999999999999999999988888776542             13568888888887643

>KOG1173|consensus

Probab=96.70  E-value=0.0033  Score=59.65  Aligned_cols=68  Identities=22%  Similarity=0.304  Sum_probs=55.7

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      |.++-=|.==|++.--+|+++||-+.||.|++|+++++.||.-.|+-.-..    .         -..|||+||--|+|+
T Consensus       309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e----~---------EhdQAmaaY~tAarl  375 (611)
T KOG1173|consen  309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE----G---------EHDQAMAAYFTAARL  375 (611)
T ss_pred             CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc----c---------hHHHHHHHHHHHHHh
Confidence            445555666799999999999999999999999999999999998753222    1         357899999999986


Q ss_pred             C
Q psy5931         157 Q  157 (173)
Q Consensus       157 ~  157 (173)
                      -
T Consensus       376 ~  376 (611)
T KOG1173|consen  376 M  376 (611)
T ss_pred             c
Confidence            3

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.63  E-value=0.0048  Score=40.51  Aligned_cols=60  Identities=25%  Similarity=0.168  Sum_probs=50.7

Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          85 LKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        85 LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .+|..+.+.|++++|-..|..++..+|..+.+|...|..+..+-.             -..|+.-|-+++..+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR-------------YDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--------------HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHC
Confidence            478999999999999999999999999999999999999887631             245777777777664

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.62  E-value=0.066  Score=33.82  Aligned_cols=97  Identities=19%  Similarity=0.264  Sum_probs=71.5

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ....|.+...+|-++-++..+.++..+ |+-+  ++   ....+.|+...      +++..+++.++..--.   .+...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~------~~~~~a~~~~~~~~~~---~~~~~   68 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA--DA---YYNLAAAYYKL------GKYEEALEDYEKALEL---DPDNA   68 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH--HH---HHHHHHHHHHH------HHHHHHHHHHHHHHhC---CCcch
Confidence            356788888899999999999987654 3322  22   34467788774      5677888877654321   12233


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      +.+...|.++...|++++|...|..++..+|+
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            78899999999999999999999999988763

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.60  E-value=0.004  Score=41.51  Aligned_cols=57  Identities=23%  Similarity=0.279  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHH
Q psy5931          56 KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK  115 (173)
Q Consensus        56 ~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k  115 (173)
                      .+++.+++++++..--   ..|....++..+|.++.++|++++|.+.|..+++.+|+.+.
T Consensus         8 ~~~~~~A~~~~~~~l~---~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    8 QEDYEEALEVLERALE---LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             CCCHHHHHHHHHHHHH---hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            3568888888887655   35668899999999999999999999999999999997554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.53  E-value=0.06  Score=40.98  Aligned_cols=113  Identities=11%  Similarity=0.048  Sum_probs=80.9

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcH-HHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPI-VDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v-~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|.+...+|-++-++..+.+....|..+. .+.   ....+.|++..      +++.++.+.++..-- .  .+...+
T Consensus       103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~------g~~~~A~~~~~~~~~-~--~~~~~~  170 (234)
T TIGR02521       103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARS---LENAGLCALKA------GDFDKAEKYLTRALQ-I--DPQRPE  170 (234)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhccccccchHH---HHHHHHHHHHc------CCHHHHHHHHHHHHH-h--CcCChH
Confidence            4578888889999999999999877654321 122   23347777774      345555555544321 1  223467


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      .+...|.++.+.|++++|...|..++++.|..+..|...+......
T Consensus       171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (234)
T TIGR02521       171 SLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL  216 (234)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            7889999999999999999999999999888888887777666554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0553|consensus

Probab=96.48  E-value=0.02  Score=50.73  Aligned_cols=105  Identities=14%  Similarity=0.126  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931          38 EKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW  117 (173)
Q Consensus        38 ~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW  117 (173)
                      ..+=|+.||-=....  .-+.|+++++.-+..-.   -.+-.|-+|..|+-.+++||.+++|-+.-.+|+++||.+.|+|
T Consensus        78 ~~~AE~LK~eGN~~m--~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay  152 (304)
T KOG0553|consen   78 KALAESLKNEGNKLM--KNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY  152 (304)
T ss_pred             HHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH
Confidence            344555665432111  13458888876655433   3567789999999999999999999999999999999999999


Q ss_pred             HHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931         118 ALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKES  160 (173)
Q Consensus       118 ~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~  160 (173)
                      ..-|.-...+-.             -+.|+..|=.|.-++.+.
T Consensus       153 ~RLG~A~~~~gk-------------~~~A~~aykKaLeldP~N  182 (304)
T KOG0553|consen  153 GRLGLAYLALGK-------------YEEAIEAYKKALELDPDN  182 (304)
T ss_pred             HHHHHHHHccCc-------------HHHHHHHHHhhhccCCCc
Confidence            888876655521             234666677777665443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.44  E-value=0.045  Score=48.50  Aligned_cols=111  Identities=10%  Similarity=0.075  Sum_probs=81.6

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY   83 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~   83 (173)
                      .-|.-|.+.|-++-|+..+.+.-.+-. .-.+++   ...+.||+.+      +++.+++..++..--   -.+..++.|
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~---~~~a~~~~~~------g~~~eAl~~~~~Al~---l~P~~~~a~   73 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDP-NNAELY---ADRAQANIKL------GNFTEAVADANKAIE---LDPSLAKAY   73 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHH---HHHHHHHHHc------CCHHHHHHHHHHHHH---hCcCCHHHH
Confidence            446778888999999999999766421 112233   4568888885      567777777766522   134567889


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931          84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF  128 (173)
Q Consensus        84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f  128 (173)
                      ..+|..+..+|++++|...|..|+.++|+.+.+.... ..|+...
T Consensus        74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l-~~~~~kl  117 (356)
T PLN03088         74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI-KECDEKI  117 (356)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH
Confidence            9999999999999999999999999999988776544 4444444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.41  E-value=0.023  Score=39.38  Aligned_cols=82  Identities=20%  Similarity=0.314  Sum_probs=57.8

Q ss_pred             CCChHHHHHHHHhhcCCCCC-cHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHH
Q psy5931          12 HHLTSVCLDSLFRLYTIPSV-PIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLL   90 (173)
Q Consensus        12 h~l~~vc~~~L~ki~~lp~i-~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl   90 (173)
                      +|-++-++....++.....- +-.+...   ..+.||+++      +++.+++++++.-.+   .+. ..+...+.|..+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~---~la~~~~~~------~~y~~A~~~~~~~~~---~~~-~~~~~~l~a~~~   68 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLY---NLAQCYFQQ------GKYEEAIELLQKLKL---DPS-NPDIHYLLARCL   68 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHH---HHHHHHHHT------THHHHHHHHHHCHTH---HHC-HHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHH---HHHHHHHHC------CCHHHHHHHHHHhCC---CCC-CHHHHHHHHHHH
Confidence            46677888888888774322 1222222   269999995      789999999988222   232 356666779999


Q ss_pred             HHhCCchHHHHHHHHH
Q psy5931          91 AQIGRSAEANKAFSAA  106 (173)
Q Consensus        91 ~~Lg~~deA~~~F~~A  106 (173)
                      .++|++|||-+.|..|
T Consensus        69 ~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   69 LKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHTT-HHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHhcC
Confidence            9999999999999765

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.37  E-value=0.1  Score=47.78  Aligned_cols=109  Identities=19%  Similarity=0.207  Sum_probs=74.3

Q ss_pred             HHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHH
Q psy5931           5 FGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYA   84 (173)
Q Consensus         5 fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~   84 (173)
                      +|++-.+.|=++-++..+.+.-.... +-.+   -....++|++..      +.+.++++++......  .++..++.+.
T Consensus        62 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~~~~~a~~~~~~------g~~~~a~~~~~~~~~~--~~~~~~~~~~  129 (899)
T TIGR02917        62 LGKIYLALGDYAAAEKELRKALSLGY-PKNQ---VLPLLARAYLLQ------GKFQQVLDELPGKTLL--DDEGAAELLA  129 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCC-Chhh---hHHHHHHHHHHC------CCHHHHHHhhcccccC--CchhhHHHHH
Confidence            45555555555555555555443211 1111   123445666653      4577778777655421  4677899999


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHH
Q psy5931          85 LKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYME  125 (173)
Q Consensus        85 LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d  125 (173)
                      +.|..+.++|++++|.+.|..+++.+|+.+.+|..-|...-
T Consensus       130 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  170 (899)
T TIGR02917       130 LRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL  170 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999999999999999998888877776543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.21  E-value=0.14  Score=43.84  Aligned_cols=115  Identities=20%  Similarity=0.150  Sum_probs=80.3

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCC--chhhH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLT--KEMTA   80 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~--~~qka   80 (173)
                      +.+|.+..+.|-++-++..+.++..++. +-.++.   ...+.++.+.      +++.++++.+...--..-.  ..+.+
T Consensus       111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~---~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~  180 (389)
T PRK11788        111 QELGQDYLKAGLLDRAEELFLQLVDEGD-FAEGAL---QQLLEIYQQE------KDWQKAIDVAERLEKLGGDSLRVEIA  180 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHcCCc-chHHHH---HHHHHHHHHh------chHHHHHHHHHHHHHhcCCcchHHHH
Confidence            4567777888999999999999876532 222333   3345566653      4566666665543111111  12356


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      .++...|..+.+.|+.++|.+.|..++.++|+.+.+|..-|....+.
T Consensus       181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  227 (389)
T PRK11788        181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ  227 (389)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC
Confidence            67788899999999999999999999999999999998888876664

>PRK12370 invasion protein regulator; Provisional

Probab=96.16  E-value=0.026  Score=52.51  Aligned_cols=67  Identities=9%  Similarity=0.016  Sum_probs=53.6

Q ss_pred             HHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          58 QLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        58 el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      ++.++++.++..--   -.+..++.+...|.++...|++++|...|..|+.++|+.+.+|..-|..+...
T Consensus       319 ~~~~A~~~~~~Al~---ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  385 (553)
T PRK12370        319 AMIKAKEHAIKATE---LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA  385 (553)
T ss_pred             HHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            45566666554322   24667888999999999999999999999999999999999998888776655

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.03  E-value=0.15  Score=43.02  Aligned_cols=98  Identities=15%  Similarity=0.203  Sum_probs=81.1

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ..+|+..=..|=.+.++.+|+..-+.|.=+.--+..++|- ++-.+|      .+++.+||..++...=+-|    .+-.
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL-Arvq~q------~~k~D~AL~~L~t~~~~~w----~~~~  161 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL-ARVQLQ------QKKADAALKTLDTIKEESW----AAIV  161 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH-HHHHHH------hhhHHHHHHHHhccccccH----HHHH
Confidence            4578888888889999999998888876666667777775 566666      4789999999998876444    6677


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHD  111 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~  111 (173)
                      .-+||.++...|+.++|-.+|..|++..+
T Consensus       162 ~elrGDill~kg~k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         162 AELRGDILLAKGDKQEARAAYEKALESDA  190 (207)
T ss_pred             HHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence            78999999999999999999999999954

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.88  E-value=0.017  Score=53.68  Aligned_cols=70  Identities=23%  Similarity=0.156  Sum_probs=59.5

Q ss_pred             CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHH---HHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHH
Q psy5931          75 TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKA---WALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFM  151 (173)
Q Consensus        75 ~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ka---W~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyL  151 (173)
                      .++..++-+...|..+.++|++|||-..|..|+.++|+.+.+   |..=|-.+-.+-.             ...|+.||-
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr-------------~dEAla~Lr  136 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE-------------GKKAADCLR  136 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC-------------HHHHHHHHH
Confidence            467889999999999999999999999999999999998865   8888877777642             356888888


Q ss_pred             HHchhC
Q psy5931         152 HACRHQ  157 (173)
Q Consensus       152 qA~~~~  157 (173)
                      +|+..+
T Consensus       137 rALels  142 (453)
T PLN03098        137 TALRDY  142 (453)
T ss_pred             HHHHhc
Confidence            888763

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.88  E-value=0.06  Score=43.54  Aligned_cols=108  Identities=9%  Similarity=0.029  Sum_probs=76.6

Q ss_pred             CCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy5931          28 IPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAV  107 (173)
Q Consensus        28 lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Av  107 (173)
                      |-+|.|+|-...+-..+--+++      ..++.++-.+..-+-+   -++..++.|.-=|+.+..+|++++|-.+|+.|.
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~------~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLME------VKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4456777777777777776676      3567777777776666   455667778888888888888888888888888


Q ss_pred             ccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931         108 QMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       108 ql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      +++|+.|.+--.=|.-+-.+-.             ...|..||-.|+...
T Consensus        97 ~L~~ddp~~~~~ag~c~L~lG~-------------~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         97 QIKIDAPQAPWAAAECYLACDN-------------VCYAIKALKAVVRIC  133 (157)
T ss_pred             hcCCCCchHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHh
Confidence            8888888776555544333321             345777888887765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.84  E-value=0.16  Score=40.86  Aligned_cols=109  Identities=17%  Similarity=0.105  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHH---
Q psy5931          39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK---  115 (173)
Q Consensus        39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k---  115 (173)
                      ..-+.+.++++.      +++.+++..++..--.+-..+...+.+...|..+.+.|++++|...|..++..+|+.+.   
T Consensus        35 ~~~~~g~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        35 ELYEEAKEALDS------GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             HHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            334556677764      56778888887763333333455567888899999999999999999999999997776   


Q ss_pred             HHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931         116 AWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus       116 aW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      +|..=|......+...-     .+..-...|+.-|-.+++.+.
T Consensus       109 a~~~~g~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~p  146 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVD-----RDQTAAREAFEAFQELIRRYP  146 (235)
T ss_pred             HHHHHHHHHHHhccccc-----CCHHHHHHHHHHHHHHHHHCC
Confidence            56555666555432110     122234567777777766543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.84  E-value=0.26  Score=39.63  Aligned_cols=109  Identities=13%  Similarity=-0.031  Sum_probs=79.7

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCC-cHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSV-PIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i-~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ...|....+.|-++.++..+.++... |+= ...++...   .+.||+++      +++.++++..+..-=.+-+.+...
T Consensus        37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~---la~~~~~~------~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLD---LAYAYYKS------GDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHH---HHHHHHhc------CCHHHHHHHHHHHHHHCcCCCchH
Confidence            34566677888899999999987653 422 23345433   37888885      578888888877654444444555


Q ss_pred             HHHHHHHHHHHHh--------CCchHHHHHHHHHHccchhhHHHHHHH
Q psy5931          81 EFYALKGMLLAQI--------GRSAEANKAFSAAVQMHDVMVKAWALW  120 (173)
Q Consensus        81 E~~~LKG~fl~~L--------g~~deA~~~F~~Avql~~~~~kaW~~W  120 (173)
                      +-+.+.|..+.+.        |+.++|.+.|..++..+|..+.+|...
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  155 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK  155 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            6688899999887        889999999999999999988776444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.76  E-value=0.3  Score=47.35  Aligned_cols=134  Identities=12%  Similarity=-0.045  Sum_probs=87.0

Q ss_pred             HHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhcccc------------
Q psy5931           5 FGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLK------------   72 (173)
Q Consensus         5 fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~------------   72 (173)
                      +|.+....|-++-++..+.++...+.............-+..+++      .+++.+++++++..--.            
T Consensus       278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~------~g~~~eA~~~l~~~~~~~P~~~~~~~~~~  351 (765)
T PRK10049        278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE------SENYPGALTVTAHTINNSPPFLRLYGSPT  351 (765)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh------cccHHHHHHHHHHHhhcCCceEeecCCCC
Confidence            455566667777777777777655432211111111122223333      34567777665533211            


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHH
Q psy5931          73 YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMH  152 (173)
Q Consensus        73 ~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLq  152 (173)
                      --..++..+.+.++|.++...|+.++|-+.|..++...|..+.+|..-|.....+-.             -..|+..|-+
T Consensus       352 ~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~-------------~~~A~~~l~~  418 (765)
T PRK10049        352 SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW-------------PRAAENELKK  418 (765)
T ss_pred             CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-------------HHHHHHHHHH
Confidence            112336678899999999999999999999999999999999999999987766532             2456666666


Q ss_pred             HchhC
Q psy5931         153 ACRHQ  157 (173)
Q Consensus       153 A~~~~  157 (173)
                      |....
T Consensus       419 al~l~  423 (765)
T PRK10049        419 AEVLE  423 (765)
T ss_pred             HHhhC
Confidence            66653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.75  E-value=0.029  Score=36.73  Aligned_cols=63  Identities=14%  Similarity=0.114  Sum_probs=51.9

Q ss_pred             hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931          57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD  122 (173)
Q Consensus        57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~  122 (173)
                      +++.++++.++..--   ..|+..++...-|.++.+.|++++|.+.+...+..+|+.+..|..|+.
T Consensus         5 ~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    5 GDYDEAIELLEKALQ---RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             THHHHHHHHHHHHHH---HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            567788888877643   245578888899999999999999999999999999999998888765

...

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.74  E-value=0.067  Score=43.61  Aligned_cols=47  Identities=19%  Similarity=0.154  Sum_probs=30.5

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDY  123 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~  123 (173)
                      +..++.+...|..+..+|++++|..+|..|+.+.|+.+..|...|..
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a  116 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV  116 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            44456666666666666666666666666666666666666666653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.73  E-value=0.1  Score=40.44  Aligned_cols=86  Identities=16%  Similarity=0.030  Sum_probs=63.4

Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh---hHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHH
Q psy5931          73 YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV---MVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTC  149 (173)
Q Consensus        73 ~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~---~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~C  149 (173)
                      .=..+.+++.+...|..+...|++++|...|..|+.+.+.   .+-+|...|..+...-             .-..|+.+
T Consensus        28 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g-------------~~~eA~~~   94 (168)
T CHL00033         28 TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG-------------EHTKALEY   94 (168)
T ss_pred             CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC-------------CHHHHHHH
Confidence            4466778999999999999999999999999999998765   4458888888777663             23568888


Q ss_pred             HHHHchhCC-CchhhhhHHHHhh
Q psy5931         150 FMHACRHQK-ESMSRKYLAKVDY  171 (173)
Q Consensus       150 yLqA~~~~~-~~k~Rk~laRiLW  171 (173)
                      |-+|.+... ...+...++.|.+
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHH
Confidence            888876532 2233344455444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.67  E-value=0.086  Score=42.97  Aligned_cols=95  Identities=18%  Similarity=0.184  Sum_probs=74.1

Q ss_pred             hhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHH-HHhCC--chHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCC
Q psy5931          56 KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLL-AQIGR--SAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPS  132 (173)
Q Consensus        56 ~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl-~~Lg~--~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~  132 (173)
                      .+++.++++..+..--   -.+..++++...|..+ ...|+  +++|.+.|..|+..+|+.+.+|..-|......-.   
T Consensus        86 ~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~---  159 (198)
T PRK10370         86 RNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD---  159 (198)
T ss_pred             CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC---
Confidence            3456677777765433   2356899999999965 78888  5999999999999999999999999988776531   


Q ss_pred             CCCCCchhhhHHHHHHHHHHHchhCCCchhhhhH
Q psy5931         133 PPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYL  166 (173)
Q Consensus       133 ~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~l  166 (173)
                                -..|+.+|-.+.....+.-.|.-+
T Consensus       160 ----------~~~Ai~~~~~aL~l~~~~~~r~~~  183 (198)
T PRK10370        160 ----------YAQAIELWQKVLDLNSPRVNRTQL  183 (198)
T ss_pred             ----------HHHHHHHHHHHHhhCCCCccHHHH
Confidence                      356999999999887776666543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=95.67  E-value=0.36  Score=48.87  Aligned_cols=113  Identities=12%  Similarity=0.055  Sum_probs=80.2

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCc-HHHH--------HHHHHHHHHHHhhhhccCChhHHHHHHHHhhhcccc
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVP-IVDC--------FEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLK   72 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~-v~da--------F~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~   72 (173)
                      ..+|.+..+.|-++-++..+.+...+ |.-+ ....        +.....++.+++..      .++.++++.++..--.
T Consensus       307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~------g~~~eA~~~~~~Al~~  380 (1157)
T PRK11447        307 GALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA------NNLAQAERLYQQARQV  380 (1157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHh
Confidence            45778888888899999998887653 3322 1111        12223445566653      4566666666554432


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhH
Q psy5931          73 YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYM  124 (173)
Q Consensus        73 ~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~  124 (173)
                         .+..++.+...|.++.+.|++++|.+.|..|+.++|..+.+|..++...
T Consensus       381 ---~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        381 ---DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence               3345667788899999999999999999999999999999998888765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=95.65  E-value=0.18  Score=35.35  Aligned_cols=105  Identities=10%  Similarity=0.077  Sum_probs=77.0

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcC-CCC-CcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhh
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYT-IPS-VPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMT   79 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~-lp~-i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qk   79 (173)
                      ....|....++|=++-++..+.++-. -|. ....++-   ...+.++++.      +++.++++.++..--.+-..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~   75 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAH---YWLGEAYYAQ------GKYADAAKAFLAVVKKYPKSPKA   75 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH---HHHHHHHHhh------ccHHHHHHHHHHHHHHCCCCCcc
Confidence            34567778888888888888888744 232 2222332   3367888874      56888888888655434334456


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHH
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK  115 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k  115 (173)
                      ++.+...|.++.++|+.++|.+.|..++...|+.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        76 PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            788999999999999999999999999999887553

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=95.62  E-value=0.28  Score=49.57  Aligned_cols=64  Identities=14%  Similarity=-0.003  Sum_probs=52.3

Q ss_pred             hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      +++.+++++++.       .+..++.+...|..+.+.|++++|...|..+++++|..+.+|...|..+...
T Consensus       587 G~~~eA~~~l~~-------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~  650 (1157)
T PRK11447        587 GKEAEAEALLRQ-------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ  650 (1157)
T ss_pred             CCHHHHHHHHHh-------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            346677777761       3445567788999999999999999999999999999999999998876444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.44  E-value=0.084  Score=41.29  Aligned_cols=69  Identities=19%  Similarity=0.093  Sum_probs=55.2

Q ss_pred             CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh---HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHH
Q psy5931          75 TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM---VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFM  151 (173)
Q Consensus        75 ~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~---~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyL  151 (173)
                      ..+.++..+..+|..+.+.|++++|...|..|+.+.++.   +.+|...|..+.++-.             -..|+.+|.
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-------------~~~A~~~~~   96 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-------------HDKALEYYH   96 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-------------HHHHHHHHH
Confidence            478899999999999999999999999999999987764   4577777777666531             245777777


Q ss_pred             HHchh
Q psy5931         152 HACRH  156 (173)
Q Consensus       152 qA~~~  156 (173)
                      +|++.
T Consensus        97 ~al~~  101 (172)
T PRK02603         97 QALEL  101 (172)
T ss_pred             HHHHh
Confidence            77775

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.37  E-value=0.1  Score=43.46  Aligned_cols=50  Identities=14%  Similarity=0.155  Sum_probs=41.3

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHH
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYME  125 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d  125 (173)
                      .++.+.+|...|.++.+.|+.++|...|..|+.++|+.+.++..++..+-
T Consensus       142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li  191 (280)
T PF13429_consen  142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI  191 (280)
T ss_dssp             --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            35778999999999999999999999999999999999988888776653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=95.35  E-value=0.24  Score=45.29  Aligned_cols=105  Identities=14%  Similarity=0.132  Sum_probs=80.8

Q ss_pred             HHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHH
Q psy5931           7 KIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALK   86 (173)
Q Consensus         7 ~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LK   86 (173)
                      ++-..-+..+.|++.|.++..- ..+   +...   -|++++.+      ++-.+++.+++.+--   ..++.++++.+.
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~-~pe---v~~~---LA~v~l~~------~~E~~AI~ll~~aL~---~~p~d~~LL~~Q  240 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRER-DPE---VAVL---LARVYLLM------NEEVEAIRLLNEALK---ENPQDSELLNLQ  240 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhc-CCc---HHHH---HHHHHHhc------CcHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence            3444456689999999998663 222   2222   48888875      344688999988875   355669999999


Q ss_pred             HHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          87 GMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        87 G~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      +.|+-+.|++|.|-+....||.+.|..-+.|..=+...-.+
T Consensus       241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~  281 (395)
T PF09295_consen  241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL  281 (395)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999998766654444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.22  E-value=0.15  Score=41.18  Aligned_cols=77  Identities=16%  Similarity=0.123  Sum_probs=59.7

Q ss_pred             HHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhh
Q psy5931          63 LEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVL  142 (173)
Q Consensus        63 L~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~  142 (173)
                      |.++.+..+     ++.-|-++=-|..+-..|+.++|.+.|...+.++|..+..|..+|-.+-.+-             -
T Consensus        23 l~~l~~~~~-----~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g-------------~   84 (157)
T PRK15363         23 LRMLLDDDV-----TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK-------------H   84 (157)
T ss_pred             HHHHHCCCh-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh-------------h
Confidence            455544432     4445555556888889999999999999999999999999999999887763             2


Q ss_pred             HHHHHHHHHHHchhC
Q psy5931         143 GVFAVTCFMHACRHQ  157 (173)
Q Consensus       143 ~~~Ai~CyLqA~~~~  157 (173)
                      -+.||.||=.|+.++
T Consensus        85 ~~~AI~aY~~A~~L~   99 (157)
T PRK15363         85 WGEAIYAYGRAAQIK   99 (157)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            356888888888774

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.20  E-value=0.023  Score=37.24  Aligned_cols=66  Identities=17%  Similarity=0.047  Sum_probs=50.0

Q ss_pred             HHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC-chhhhhHHHH
Q psy5931          91 AQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE-SMSRKYLAKV  169 (173)
Q Consensus        91 ~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~-~k~Rk~laRi  169 (173)
                      -+.|++++|-+.|..+++.+|+.+.+|..+|..+-+.-.             -..|...+-.....+.+ ......+++|
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-------------~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ-------------YDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--------------HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            467999999999999999999999999999999887732             34466666666665444 4555666554

...

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=95.16  E-value=0.15  Score=44.33  Aligned_cols=68  Identities=21%  Similarity=0.233  Sum_probs=53.9

Q ss_pred             hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      ..+.+++.++...--   ..+.-+|++.+.|..+.++|+.|+|...|.+|+.+.++.+..-..=|..+.=.
T Consensus       114 g~~~~A~~~~rkA~~---l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~  181 (257)
T COG5010         114 GNFGEAVSVLRKAAR---LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR  181 (257)
T ss_pred             cchHHHHHHHHHHhc---cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence            346666666655544   46778999999999999999999999999999999999988887766655443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=95.13  E-value=0.25  Score=49.88  Aligned_cols=110  Identities=11%  Similarity=-0.062  Sum_probs=67.8

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY   83 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~   83 (173)
                      ..|.++.+.|=.+.++..+.+.-.+. .+-......+   +.....      .+++.++++.+...-- . .| . ++.+
T Consensus       547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~L---a~~l~~------~Gr~~eAl~~~~~AL~-l-~P-~-~~a~  612 (987)
T PRK09782        547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWL---HAQRYI------PGQPELALNDLTRSLN-I-AP-S-ANAY  612 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHH---HHHHHh------CCCHHHHHHHHHHHHH-h-CC-C-HHHH
Confidence            45667777888888877777755442 1111111111   111111      1345555555554421 1 22 2 6778


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      ...|.++.++|++++|...|..|+.++|+.+.++..+|..+...
T Consensus       613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~  656 (987)
T PRK09782        613 VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS  656 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            88888888888888888888888888888888888888766655

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.09  E-value=0.43  Score=45.63  Aligned_cols=50  Identities=26%  Similarity=0.276  Sum_probs=32.7

Q ss_pred             hhHHHHHHHHHHHHHhCCchH----HHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          78 MTAEFYALKGMLLAQIGRSAE----ANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~de----A~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      ..++.+...|..+...|++++    |...|..|+.++|+.+.+|...|..+...
T Consensus       244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~  297 (656)
T PRK15174        244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT  297 (656)
T ss_pred             CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence            345556666777777777665    66777777777777777776666665544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=95.02  E-value=0.39  Score=48.55  Aligned_cols=118  Identities=12%  Similarity=0.034  Sum_probs=78.7

Q ss_pred             CCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHH
Q psy5931          12 HHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLL   90 (173)
Q Consensus        12 h~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl   90 (173)
                      .|-++.++..+.+.-.+ |+   .+++.   ..+.++.++      +++.++++.++..--   ..|..++.+...|.++
T Consensus       589 ~Gr~~eAl~~~~~AL~l~P~---~~a~~---~LA~~l~~l------G~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL  653 (987)
T PRK09782        589 PGQPELALNDLTRSLNIAPS---ANAYV---ARATIYRQR------HNVPAAVSDLRAALE---LEPNNSNYQAALGYAL  653 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCC---HHHHH---HHHHHHHHC------CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence            38888888888886543 43   34443   335666664      345555555544332   2455667888888888


Q ss_pred             HHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          91 AQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        91 ~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ...|+.++|...|..|+.++|+.+.+|..-|..+..+..             -..|+.+|-+|+...
T Consensus       654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-------------~~eA~~~l~~Al~l~  707 (987)
T PRK09782        654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-------------MAATQHYARLVIDDI  707 (987)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhcC
Confidence            888888888888888888888888888888887766542             133666666666553

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=94.81  E-value=0.36  Score=41.48  Aligned_cols=92  Identities=14%  Similarity=0.092  Sum_probs=70.7

Q ss_pred             hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHH---HHhHHhhcCCCCC
Q psy5931          57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW---GDYMEAQFTNPSP  133 (173)
Q Consensus        57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~W---G~~~d~~f~~~~~  133 (173)
                      +++.++++..+..-=.|-..+..++.+...|..+...|++++|-..|...+..+|..++....|   |.....+-  +  
T Consensus       157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g--~--  232 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG--D--  232 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC--C--
Confidence            4677888888877777877788889999999999999999999999999999999876666555   44443321  1  


Q ss_pred             CCCCchhhhHHHHHHHHHHHchhCCCch
Q psy5931         134 PGSAPNMVLGVFAVTCFMHACRHQKESM  161 (173)
Q Consensus       134 ~~~~~~~~~~~~Ai~CyLqA~~~~~~~k  161 (173)
                               -..|..-|=+.++.+.++.
T Consensus       233 ---------~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        233 ---------TAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             ---------HHHHHHHHHHHHHHCcCCH
Confidence                     3557777777777665544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=94.61  E-value=0.34  Score=46.95  Aligned_cols=109  Identities=12%  Similarity=0.033  Sum_probs=86.3

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|..+|+.|-.+-++..+.+...+ |.-  .++.   ...+.++...      +++.++++.++..--.   .+..++
T Consensus        53 ~~lA~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~---~~la~~l~~~------g~~~eA~~~l~~~l~~---~P~~~~  118 (765)
T PRK10049         53 AAVAVAYRNLKQWQNSLTLWQKALSLEPQN--DDYQ---RGLILTLADA------GQYDEALVKAKQLVSG---APDKAN  118 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHH---HHHHHHHHHC------CCHHHHHHHHHHHHHh---CCCCHH
Confidence            45788899999999999999997666 432  2232   3667788764      5678888888876442   444555


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHh
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEA  126 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~  126 (173)
                       +...|..+...|+.++|...|..++.++|..+.+|..+|..+..
T Consensus       119 -~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049        119 -LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             -HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence             77889999999999999999999999999999999999987754

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=94.49  E-value=0.13  Score=33.96  Aligned_cols=67  Identities=12%  Similarity=0.010  Sum_probs=52.3

Q ss_pred             HHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhHH
Q psy5931          88 MLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLA  167 (173)
Q Consensus        88 ~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~la  167 (173)
                      .++.+.+++++|.+.+..++.++|..+..|..-|..+..+-.             -..|+.+|-+++....+...+..+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-------------~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR-------------YEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc-------------HHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            356788999999999999999999999999999988877742             2457888888887765555444443

>smart00028 TPR Tetratricopeptide repeats

Probab=94.31  E-value=0.07  Score=27.77  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      +.+..+|..+..+|++++|-..|..++.++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            45778999999999999999999999998775

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2076|consensus

Probab=94.17  E-value=0.51  Score=47.16  Aligned_cols=110  Identities=15%  Similarity=0.143  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          33 IVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        33 v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      +.-+..++--||--.+-      .+++.++.++++..==   ..+--.+-|.-=|++++..|+.+.|...+-.|..+.|+
T Consensus       135 l~~~l~~ll~eAN~lfa------rg~~eeA~~i~~EvIk---qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~  205 (895)
T KOG2076|consen  135 LAPELRQLLGEANNLFA------RGDLEEAEEILMEVIK---QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK  205 (895)
T ss_pred             cCHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            33344444444544333      4577788777766544   33444566666799999999999999999999999999


Q ss_pred             hHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhH
Q psy5931         113 MVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYL  166 (173)
Q Consensus       113 ~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~l  166 (173)
                      -..-|..|+++...+-             .-.+|..||-.|++. ++.+ ++++
T Consensus       206 d~e~W~~ladls~~~~-------------~i~qA~~cy~rAI~~-~p~n-~~~~  244 (895)
T KOG2076|consen  206 DYELWKRLADLSEQLG-------------NINQARYCYSRAIQA-NPSN-WELI  244 (895)
T ss_pred             ChHHHHHHHHHHHhcc-------------cHHHHHHHHHHHHhc-CCcc-hHHH
Confidence            9999999999977664             345689999999988 4444 4444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.11  E-value=0.16  Score=34.26  Aligned_cols=49  Identities=18%  Similarity=0.204  Sum_probs=39.5

Q ss_pred             HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccc
Q psy5931          59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMH  110 (173)
Q Consensus        59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~  110 (173)
                      ++.++++.+.+.=   ..++.+..+..-|.++..+|++++|.+.|..|+.+.
T Consensus        28 ~~~al~~~~~~~~---~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   28 YEKALDIEEQLGD---DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            5566666444432   456789999999999999999999999999999874

...

>KOG4234|consensus

Probab=94.07  E-value=0.35  Score=41.64  Aligned_cols=94  Identities=18%  Similarity=0.190  Sum_probs=76.4

Q ss_pred             HHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCC
Q psy5931          58 QLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSA  137 (173)
Q Consensus        58 el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~  137 (173)
                      .|+++|+++-+|.     .+-++-+|..+|.-+-||+..+.|-..-+.|+++.|+..||-..-+...+++  ++      
T Consensus       117 kY~~Ale~cp~~~-----~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~--ek------  183 (271)
T KOG4234|consen  117 KYQEALESCPSTS-----TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM--EK------  183 (271)
T ss_pred             HHHHHHHhCcccc-----HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh--hh------
Confidence            4899999998884     4889999999999999999999999999999999999999987666666665  22      


Q ss_pred             chhhhHHHHHHHHHHHchhC-CCchhhhhHHHH
Q psy5931         138 PNMVLGVFAVTCFMHACRHQ-KESMSRKYLAKV  169 (173)
Q Consensus       138 ~~~~~~~~Ai~CyLqA~~~~-~~~k~Rk~laRi  169 (173)
                           -..|+.=|=+-...+ ....+|+-|+|+
T Consensus       184 -----~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  184 -----YEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             -----HHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence                 467888887665443 345678888775

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=94.02  E-value=1.2  Score=42.58  Aligned_cols=51  Identities=12%  Similarity=0.144  Sum_probs=45.1

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      |..++.+...|.++.+.|++++|...|..+++++|..+.+|...|..+...
T Consensus       281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~  331 (656)
T PRK15174        281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV  331 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            456788889999999999999999999999999999999998888776554

>KOG4162|consensus

Probab=93.95  E-value=0.54  Score=46.38  Aligned_cols=100  Identities=19%  Similarity=0.170  Sum_probs=69.1

Q ss_pred             HHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHH--HHHHHHccchhhHHHH
Q psy5931          40 IRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANK--AFSAAVQMHDVMVKAW  117 (173)
Q Consensus        40 lrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~--~F~~Avql~~~~~kaW  117 (173)
                      .+.-..|+..      +..+.+|.+..-..--   -+|.--...+=.|..+.++|+..-|.+  .-+-|+++||+.+++|
T Consensus       687 ~~~~G~~~~~------~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW  757 (799)
T KOG4162|consen  687 YYLRGLLLEV------KGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW  757 (799)
T ss_pred             HHHhhHHHHH------HHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence            3444556665      3455666554433211   123333456667999999998888888  8899999999999999


Q ss_pred             HHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCch
Q psy5931         118 ALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESM  161 (173)
Q Consensus       118 ~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k  161 (173)
                      ..=|.........             .+|..||.-|+.+.....
T Consensus       758 ~~LG~v~k~~Gd~-------------~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  758 YYLGEVFKKLGDS-------------KQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHHHccch-------------HHHHHHHHHHHhhccCCC
Confidence            8888877666432             369999999998865443

>PRK12370 invasion protein regulator; Provisional

Probab=93.92  E-value=0.78  Score=42.73  Aligned_cols=59  Identities=17%  Similarity=0.191  Sum_probs=45.8

Q ss_pred             hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931          57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA  118 (173)
Q Consensus        57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~  118 (173)
                      +++.+|+..++..--   ..+..++.+...|.++...|++|+|...|..|+.++|..+.++.
T Consensus       352 g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~  410 (553)
T PRK12370        352 SEYIVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI  410 (553)
T ss_pred             cCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence            346666666655433   24556778889999999999999999999999999999775543

>KOG4626|consensus

Probab=93.91  E-value=0.17  Score=49.51  Aligned_cols=98  Identities=21%  Similarity=0.214  Sum_probs=56.9

Q ss_pred             HHHHhhhhccC-ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931          44 VKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD  122 (173)
Q Consensus        44 ~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~  122 (173)
                      +.||-.+++-. +++.++.+|..-.-.-.   -++...+=|--+|.-+-.-|+.+.|-+.|..|+|++|.+.-+-..-|.
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn  192 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN  192 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence            44554444332 34445555554433222   345555666666666777777777777777777777766555554444


Q ss_pred             hHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931         123 YMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       123 ~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .+-.+.             ..+.|-+|||.|++-+
T Consensus       193 Llka~G-------------rl~ea~~cYlkAi~~q  214 (966)
T KOG4626|consen  193 LLKAEG-------------RLEEAKACYLKAIETQ  214 (966)
T ss_pred             HHHhhc-------------ccchhHHHHHHHHhhC
Confidence            443332             3456889999999764

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=93.89  E-value=0.063  Score=32.68  Aligned_cols=29  Identities=21%  Similarity=0.400  Sum_probs=25.9

Q ss_pred             CchHHHHHHHHHHccchhhHHHHHHHHHhH
Q psy5931          95 RSAEANKAFSAAVQMHDVMVKAWALWGDYM  124 (173)
Q Consensus        95 ~~deA~~~F~~Avql~~~~~kaW~~WG~~~  124 (173)
                      ..|.|-..|...|..||. +|.|..|+.|=
T Consensus         2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFE   30 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHPE-VKNWIKYAKFE   30 (32)
T ss_pred             hHHHHHHHHHHHHHhCCC-chHHHHHHHhh
Confidence            358899999999999977 99999999984

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=93.72  E-value=0.2  Score=33.72  Aligned_cols=67  Identities=16%  Similarity=0.114  Sum_probs=46.8

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh-------HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHH
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM-------VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTC  149 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~-------~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~C  149 (173)
                      +..+..+...|.++..+|++++|...|..|+++....       +..+..=|..+..+.             =-..|+..
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-------------~~~~A~~~   68 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-------------DYEEALEY   68 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-------------CHHHHHHH
Confidence            4567889999999999999999999999999884322       344444444444432             13567777


Q ss_pred             HHHHchh
Q psy5931         150 FMHACRH  156 (173)
Q Consensus       150 yLqA~~~  156 (173)
                      |-+|...
T Consensus        69 ~~~al~i   75 (78)
T PF13424_consen   69 YQKALDI   75 (78)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            7777654

...

>KOG4626|consensus

Probab=93.29  E-value=0.31  Score=47.72  Aligned_cols=68  Identities=22%  Similarity=0.286  Sum_probs=60.3

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +|-+|-|..=|.++-.-|+.++|-..|..||.+.|+.+.+|+.-|.-+-+.-.             +..|+.||.+|.++
T Consensus       113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~-------------~~~a~~~~~~alql  179 (966)
T KOG4626|consen  113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD-------------LELAVQCFFEALQL  179 (966)
T ss_pred             chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC-------------CcccHHHHHHHHhc
Confidence            78999999999999999999999999999999999999999988877665543             34599999999998


Q ss_pred             C
Q psy5931         157 Q  157 (173)
Q Consensus       157 ~  157 (173)
                      .
T Consensus       180 n  180 (966)
T KOG4626|consen  180 N  180 (966)
T ss_pred             C
Confidence            3

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=92.58  E-value=3.8  Score=34.52  Aligned_cols=126  Identities=13%  Similarity=0.078  Sum_probs=84.5

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy5931          27 TIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAA  106 (173)
Q Consensus        27 ~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~A  106 (173)
                      ++|+.+..+.|.+-.+    +++      ++++.++.+..+..-=.|-..+....-...-|..+-+.|++++|...|...
T Consensus        26 ~~~~~~~~~~Y~~A~~----~~~------~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f   95 (243)
T PRK10866         26 EVPDNPPSEIYATAQQ----KLQ------DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF   95 (243)
T ss_pred             CCCCCCHHHHHHHHHH----HHH------CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3556667776654433    344      356777777777765556556655555667799999999999999999999


Q ss_pred             HccchhhHHHHHHHHHhHHhh---------cCC-CCCCCCCchhhhHHHHHHHHHHHchhCCCchhhh
Q psy5931         107 VQMHDVMVKAWALWGDYMEAQ---------FTN-PSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRK  164 (173)
Q Consensus       107 vql~~~~~kaW~~WG~~~d~~---------f~~-~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk  164 (173)
                      ++.+|+.+++  .+..|.-.+         |.. .+.+.+.++...+..|+.-|-+=++-+.+++...
T Consensus        96 i~~~P~~~~~--~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~  161 (243)
T PRK10866         96 IRLNPTHPNI--DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT  161 (243)
T ss_pred             HHhCcCCCch--HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH
Confidence            9999987755  444444332         111 1223455677788888888888887766665433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=92.37  E-value=0.66  Score=38.64  Aligned_cols=113  Identities=12%  Similarity=0.131  Sum_probs=73.9

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CC-CcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PS-VPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~-i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ..+|.+..+.|-++-++..+.+.-.+ |+ .++..      ..+-.+.++.   ..+|+.+.|+-.....      +..+
T Consensus       150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~------~l~~~li~~~---~~~~~~~~l~~~~~~~------~~~~  214 (280)
T PF13429_consen  150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARN------ALAWLLIDMG---DYDEAREALKRLLKAA------PDDP  214 (280)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH------HHHHHHCTTC---HHHHHHHHHHHHHHH-------HTSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH------HHHHHHHHCC---ChHHHHHHHHHHHHHC------cCHH
Confidence            45778888888888888888886553 32 22211      2233444432   2344566666666554      3334


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCC
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTN  130 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~  130 (173)
                      .++.--|..+..+|++++|-..|..++...|+-+.....-|+.+......
T Consensus       215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~  264 (280)
T PF13429_consen  215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK  264 (280)
T ss_dssp             CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence            45566699999999999999999999999999999999999888877543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=92.32  E-value=0.68  Score=40.86  Aligned_cols=84  Identities=17%  Similarity=0.083  Sum_probs=63.0

Q ss_pred             CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHc
Q psy5931          75 TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHAC  154 (173)
Q Consensus        75 ~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~  154 (173)
                      ..++.+|=+-+=|-+..++|+.++|-.+|..|+++.|.-+..|..||.-+...-...          .-..|-.-+=||.
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~----------~ta~a~~ll~~al  220 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQ----------MTAKARALLRQAL  220 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCc----------ccHHHHHHHHHHH
Confidence            457788889999999999999999999999999999999999999999887665322          1122333334555


Q ss_pred             hhC-CCchhhhhHHH
Q psy5931         155 RHQ-KESMSRKYLAK  168 (173)
Q Consensus       155 ~~~-~~~k~Rk~laR  168 (173)
                      +.+ .+..++.||+.
T Consensus       221 ~~D~~~iral~lLA~  235 (287)
T COG4235         221 ALDPANIRALSLLAF  235 (287)
T ss_pred             hcCCccHHHHHHHHH
Confidence            544 45566666654

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.17  E-value=0.22  Score=27.54  Aligned_cols=31  Identities=19%  Similarity=0.431  Sum_probs=28.3

Q ss_pred             CCchHHHHHHHHHHccchhhHHHHHHHHHhH
Q psy5931          94 GRSAEANKAFSAAVQMHDVMVKAWALWGDYM  124 (173)
Q Consensus        94 g~~deA~~~F~~Avql~~~~~kaW~~WG~~~  124 (173)
                      |+.+.|-..|..++..+|..+..|..+..|.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e   31 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFE   31 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            5678999999999999999999999998874

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PLN02789 farnesyltranstransferase

Probab=91.93  E-value=1.6  Score=38.58  Aligned_cols=90  Identities=7%  Similarity=0.049  Sum_probs=57.9

Q ss_pred             CCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhC-CchHHHHHHHHHHc
Q psy5931          30 SVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIG-RSAEANKAFSAAVQ  108 (173)
Q Consensus        30 ~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg-~~deA~~~F~~Avq  108 (173)
                      .|--.+.|..+....+..+..     .....++|+..+..-.   ..+.-...+..||.++.+|| +.++|-..+..+++
T Consensus        29 ~i~y~~~~~~a~~~~ra~l~~-----~e~serAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~  100 (320)
T PLN02789         29 PIAYTPEFREAMDYFRAVYAS-----DERSPRALDLTADVIR---LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE  100 (320)
T ss_pred             ceeeCHHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence            455556777777776666653     1235566666554433   23444567777888888887 46788888888888


Q ss_pred             cchhhHHHHHHHHHhHHhh
Q psy5931         109 MHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus       109 l~~~~~kaW~~WG~~~d~~  127 (173)
                      .+|+...+|..=|-.++++
T Consensus       101 ~npknyqaW~~R~~~l~~l  119 (320)
T PLN02789        101 DNPKNYQIWHHRRWLAEKL  119 (320)
T ss_pred             HCCcchHHhHHHHHHHHHc
Confidence            8887777777555444443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=91.50  E-value=2.9  Score=37.31  Aligned_cols=124  Identities=13%  Similarity=0.040  Sum_probs=89.0

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ..+|+.....|-++.+...|.+....|.=+   --.-      -|-+..    .++..+++..++..-=   ..|..+++
T Consensus       267 ~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~---~l~~------l~~~l~----~~~~~~al~~~e~~lk---~~P~~~~l  330 (398)
T PRK10747        267 VAMAEHLIECDDHDTAQQIILDGLKRQYDE---RLVL------LIPRLK----TNNPEQLEKVLRQQIK---QHGDTPLL  330 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCH---HHHH------HHhhcc----CCChHHHHHHHHHHHh---hCCCCHHH
Confidence            356778888888888888888876644211   1111      111111    1345566777776554   44677899


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +..-|-+.-+.|+.++|-..|..++...|+. ..+...+..+++....             ..|..||-+|..+
T Consensus       331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~-------------~~A~~~~~~~l~~  390 (398)
T PRK10747        331 WSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKP-------------EEAAAMRRDGLML  390 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCH-------------HHHHHHHHHHHhh
Confidence            9999999999999999999999999999984 5577788888887532             3478899998764

>KOG0890|consensus

Probab=91.39  E-value=2  Score=47.04  Aligned_cols=160  Identities=14%  Similarity=0.068  Sum_probs=100.5

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhh--cCCCCCcHHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhcccc---CCCc
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRL--YTIPSVPIVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLK---YLTK   76 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki--~~lp~i~v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~---~F~~   76 (173)
                      .+.|++||+.|-.+-|.+.|-+-  +.+|.+.        -|.||-..+...+. .-.+|+++++.--.-+..   .-..
T Consensus      1674 LqsAriaR~aG~~q~A~nall~A~e~r~~~i~--------~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESRLPEIV--------LERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhhhcccchHH--------HHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence            57899999999999999888663  3355443        36677777631100 112344444332221111   1113


Q ss_pred             hhhHHHHH----HHHHHHHHhCCc--hHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCC---chhhhHHHHH
Q psy5931          77 EMTAEFYA----LKGMLLAQIGRS--AEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSA---PNMVLGVFAV  147 (173)
Q Consensus        77 ~qkaE~~~----LKG~fl~~Lg~~--deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~---~~~~~~~~Ai  147 (173)
                      .++..+|.    +=|.++...|+.  ++=-+.|-.|++++|..-+.-..=|.|.|++....+..-.+   .-+.+.. |+
T Consensus      1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~-~~ 1824 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK-AI 1824 (2382)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH-HH
Confidence            45555555    334566677774  55668899999999977777777788988887655432222   3456666 77


Q ss_pred             HHHHHHchhCCCchhhhhHHHH--hhc
Q psy5931         148 TCFMHACRHQKESMSRKYLAKV--DYI  172 (173)
Q Consensus       148 ~CyLqA~~~~~~~k~Rk~laRi--LWL  172 (173)
                      .=|..|... ++..-+.-++|+  |||
T Consensus      1825 ~~~~~sl~y-g~~~iyqsmPRllTLWL 1850 (2382)
T KOG0890|consen 1825 YFFGRALYY-GNQHLYQSMPRLLTLWL 1850 (2382)
T ss_pred             HHHHHHHHh-cchhHHHhhhHHHHHHH
Confidence            666777665 788888899999  564

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=91.33  E-value=2.6  Score=34.13  Aligned_cols=112  Identities=15%  Similarity=0.079  Sum_probs=74.7

Q ss_pred             HHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH---HHHH
Q psy5931          42 QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV---KAWA  118 (173)
Q Consensus        42 Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~---kaW~  118 (173)
                      ++++.+++      .+++.++.+..+...-.|-..+.-.+-...-|.-+-+.|++++|...|..-+..+|+.+   .++.
T Consensus        10 ~~a~~~~~------~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen   10 QKALEALQ------QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             HHHHHHHH------CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             HHHHHHHH------CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            45666676      46799999999988888888888888888889999999999999999999999999866   3555


Q ss_pred             HHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCch
Q psy5931         119 LWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESM  161 (173)
Q Consensus       119 ~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k  161 (173)
                      ..|.-...+.....  .+.++.....+|+.-|-.-++.+.++.
T Consensus        84 ~~g~~~~~~~~~~~--~~~~D~~~~~~A~~~~~~li~~yP~S~  124 (203)
T PF13525_consen   84 MLGLSYYKQIPGIL--RSDRDQTSTRKAIEEFEELIKRYPNSE  124 (203)
T ss_dssp             HHHHHHHHHHHHHH---TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred             HHHHHHHHhCccch--hcccChHHHHHHHHHHHHHHHHCcCch
Confidence            55543333321110  001455677888888877777665554

>PLN02789 farnesyltranstransferase

Probab=91.29  E-value=6  Score=34.92  Aligned_cols=129  Identities=9%  Similarity=0.057  Sum_probs=84.5

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ..|-.+-.+.+..+-++...+++-.+. -.--.+..   ....|+..+     ...+.+.|+.++..-..   .+.....
T Consensus        41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~---~R~~iL~~L-----~~~l~eeL~~~~~~i~~---npknyqa  108 (320)
T PLN02789         41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWH---FRRLCLEAL-----DADLEEELDFAEDVAED---NPKNYQI  108 (320)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHH---HHHHHHHHc-----chhHHHHHHHHHHHHHH---CCcchHH
Confidence            345555666778888888888765431 11122222   123344433     23467777777665442   3344456


Q ss_pred             HHHHHHHHHHhCCc--hHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          83 YALKGMLLAQIGRS--AEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~--deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +..||.++.++|+.  +++...+..++.++|....+|..=|-.+.++-             --..|+.+|-++++.
T Consensus       109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~-------------~~~eeL~~~~~~I~~  171 (320)
T PLN02789        109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG-------------GWEDELEYCHQLLEE  171 (320)
T ss_pred             hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHH
Confidence            99999999999974  67788888999999999999988777776652             134688888888875

>KOG1126|consensus

Probab=91.08  E-value=0.76  Score=44.52  Aligned_cols=69  Identities=20%  Similarity=0.142  Sum_probs=57.8

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR  155 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~  155 (173)
                      ++.+.|=|.-=|.+.+=-+++|.|-+.|..|||++|.++-+...||+=.-..  +           --..|+.||--|++
T Consensus       417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~--e-----------e~d~a~~~fr~Al~  483 (638)
T KOG1126|consen  417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIAT--E-----------EFDKAMKSFRKALG  483 (638)
T ss_pred             CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhh--H-----------HHHhHHHHHHhhhc
Confidence            4667888999999999999999999999999999999999999999732211  1           24569999999998


Q ss_pred             hC
Q psy5931         156 HQ  157 (173)
Q Consensus       156 ~~  157 (173)
                      ++
T Consensus       484 ~~  485 (638)
T KOG1126|consen  484 VD  485 (638)
T ss_pred             CC
Confidence            74

>KOG1156|consensus

Probab=90.84  E-value=0.93  Score=44.15  Aligned_cols=97  Identities=23%  Similarity=0.356  Sum_probs=74.2

Q ss_pred             HHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHH
Q psy5931          41 RQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW  120 (173)
Q Consensus        41 rEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~W  120 (173)
                      |+-+|||-+       ++|..||-.|...-=   ..+.-.|=+++||+.|..||+.+||...-.-++..|+..+=-|--.
T Consensus        12 ~~~lk~yE~-------kQYkkgLK~~~~iL~---k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~   81 (700)
T KOG1156|consen   12 RRALKCYET-------KQYKKGLKLIKQILK---KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL   81 (700)
T ss_pred             HHHHHHHHH-------HHHHhHHHHHHHHHH---hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence            556899985       689999999987654   4455678899999999999999999999999999888777667555


Q ss_pred             HHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931         121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKES  160 (173)
Q Consensus       121 G~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~  160 (173)
                      |-+.-    .+      +   ==.+||-||--|.+.+++.
T Consensus        82 gl~~R----~d------K---~Y~eaiKcy~nAl~~~~dN  108 (700)
T KOG1156|consen   82 GLLQR----SD------K---KYDEAIKCYRNALKIEKDN  108 (700)
T ss_pred             HHHHh----hh------h---hHHHHHHHHHHHHhcCCCc
Confidence            54421    11      1   1257999999998876543

>KOG0548|consensus

Probab=90.49  E-value=1.6  Score=41.62  Aligned_cols=68  Identities=18%  Similarity=0.191  Sum_probs=56.6

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      |.-+.+|..||.-+-+||.+.+|.+-=.++++++|+..|+|.--|.-+..|=.             =..|+.||-.|..+
T Consensus       389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~-------------ydkAleay~eale~  455 (539)
T KOG0548|consen  389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE-------------YDKALEAYQEALEL  455 (539)
T ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhc
Confidence            77788999999999999999999999999999999999999988877766621             13588899888887


Q ss_pred             C
Q psy5931         157 Q  157 (173)
Q Consensus       157 ~  157 (173)
                      +
T Consensus       456 d  456 (539)
T KOG0548|consen  456 D  456 (539)
T ss_pred             C
Confidence            4

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=90.27  E-value=2.1  Score=37.17  Aligned_cols=115  Identities=14%  Similarity=0.107  Sum_probs=77.0

Q ss_pred             HHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHH
Q psy5931          42 QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG  121 (173)
Q Consensus        42 Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG  121 (173)
                      +-+.-|++-      .++..+..-+++.--   .++.-.--+..++.+..++|+.|-|.+.|.+|++++|+-+..--..|
T Consensus        40 qLal~YL~~------gd~~~A~~nlekAL~---~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG  110 (250)
T COG3063          40 QLALGYLQQ------GDYAQAKKNLEKALE---HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG  110 (250)
T ss_pred             HHHHHHHHC------CCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence            344556652      334444444444333   46777778899999999999999999999999999999999988899


Q ss_pred             HhHHhhc---------C---CCCCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhHHHHh
Q psy5931         122 DYMEAQF---------T---NPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVD  170 (173)
Q Consensus       122 ~~~d~~f---------~---~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~laRiL  170 (173)
                      -|+-..-         .   .+|.-.  ...-.-+|+..|-+++=.   ...++.++-|-|
T Consensus       111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~--~~s~t~eN~G~Cal~~gq---~~~A~~~l~raL  166 (250)
T COG3063         111 AFLCAQGRPEEAMQQFERALADPAYG--EPSDTLENLGLCALKAGQ---FDQAEEYLKRAL  166 (250)
T ss_pred             HHHHhCCChHHHHHHHHHHHhCCCCC--CcchhhhhhHHHHhhcCC---chhHHHHHHHHH
Confidence            8886653         1   111000  111234677888887643   345666766655

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.23  E-value=0.41  Score=26.79  Aligned_cols=30  Identities=13%  Similarity=0.021  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      +...|..+.++|++++|.+.|...+.-+|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            456799999999999999999999998886

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=88.63  E-value=1  Score=42.58  Aligned_cols=52  Identities=23%  Similarity=0.307  Sum_probs=46.2

Q ss_pred             hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931          57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD  111 (173)
Q Consensus        57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~  111 (173)
                      +++.+||+.||..=-   .+|-..|+|.+||-++-..|+.++|......|-++|.
T Consensus       208 g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~  259 (517)
T PF12569_consen  208 GDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL  259 (517)
T ss_pred             CCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence            458899999996554   3566789999999999999999999999999999998

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11906 transcriptional regulator; Provisional

Probab=88.45  E-value=10  Score=35.58  Aligned_cols=102  Identities=12%  Similarity=0.115  Sum_probs=72.4

Q ss_pred             HHHHhhhhccC---ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHH
Q psy5931          44 VKCYLQMAALD---GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW  120 (173)
Q Consensus        44 ~kc~l~~~~~~---~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~W  120 (173)
                      +-||.+..-++   .+.+..+|++...-.--   -++--+--..+-|..+.-.|+.+.|.-.|..|+.+.|+.+-+|..=
T Consensus       302 A~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~  378 (458)
T PRK11906        302 AECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYR  378 (458)
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHH
Confidence            34777653222   35668888887654322   1333455678889999999999999999999999999999999876


Q ss_pred             HHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchh
Q psy5931         121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMS  162 (173)
Q Consensus       121 G~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~  162 (173)
                      |-++-.-  ++           .+.|+.+.-+|.++ ++.+.
T Consensus       379 ~~~~~~~--G~-----------~~~a~~~i~~alrL-sP~~~  406 (458)
T PRK11906        379 ALVHFHN--EK-----------IEEARICIDKSLQL-EPRRR  406 (458)
T ss_pred             HHHHHHc--CC-----------HHHHHHHHHHHhcc-Cchhh
Confidence            6654332  22           46688888888888 45443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=88.34  E-value=2.6  Score=41.15  Aligned_cols=50  Identities=22%  Similarity=0.098  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      +-++.+++=|-+...+|++|||...+.++++++|....++..-+..|-++
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~  133 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ  133 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Confidence            34899999999999999999999999999999999999999999888765

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=87.54  E-value=1.9  Score=33.17  Aligned_cols=76  Identities=17%  Similarity=0.223  Sum_probs=60.7

Q ss_pred             HHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCc-hH----------HHHHHHHHHccchh
Q psy5931          44 VKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRS-AE----------ANKAFSAAVQMHDV  112 (173)
Q Consensus        44 ~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~-de----------A~~~F~~Avql~~~  112 (173)
                      ++-+++      +.....+|++|+.+-.++=....-..++++-|.+..+++.. |+          |-+.|+.++.++|.
T Consensus         3 A~~~~~------rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~   76 (111)
T PF04781_consen    3 AKDYFA------RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD   76 (111)
T ss_pred             HHHHHH------ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence            455555      45688999999999998887777779999999999888753 32          88999999999999


Q ss_pred             hHHHHHHHHHhHH
Q psy5931         113 MVKAWALWGDYME  125 (173)
Q Consensus       113 ~~kaW~~WG~~~d  125 (173)
                      .+..-.+=|+-+.
T Consensus        77 ~A~~L~~la~~l~   89 (111)
T PF04781_consen   77 SAHSLFELASQLG   89 (111)
T ss_pred             HHHHHHHHHHHhh
Confidence            9777766665543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=87.12  E-value=15  Score=30.93  Aligned_cols=52  Identities=15%  Similarity=0.056  Sum_probs=43.6

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      .+.......+.|.++...|++++|...|..++++.|..+.++...|+.+...
T Consensus       110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~  161 (355)
T cd05804         110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ  161 (355)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence            3445667778999999999999999999999999999887777777776654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=87.03  E-value=2.8  Score=28.69  Aligned_cols=48  Identities=10%  Similarity=0.050  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      .++.+...|..+.+.|++++|...+.. ...++..+......|.-+..+
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l   71 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKL   71 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh
Confidence            667777799999999999999999999 888887766666667665555

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=86.33  E-value=6.4  Score=29.74  Aligned_cols=93  Identities=19%  Similarity=0.074  Sum_probs=56.1

Q ss_pred             HHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHH
Q psy5931          42 QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG  121 (173)
Q Consensus        42 Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG  121 (173)
                      ..+++++..      +++.++.+.++..--+.=.++-+....---|.++...|++|+|.+.+.. +.-.+-.+.+|..=|
T Consensus        53 ~lA~~~~~~------g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~G  125 (145)
T PF09976_consen   53 QLAKAAYEQ------GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLG  125 (145)
T ss_pred             HHHHHHHHC------CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHH
Confidence            357777763      5666777666665544423333443333358888899999999999865 332333445555556


Q ss_pred             HhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHc
Q psy5931         122 DYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHAC  154 (173)
Q Consensus       122 ~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~  154 (173)
                      +.+-..-.             -..|+.+|-+|+
T Consensus       126 di~~~~g~-------------~~~A~~~y~~Al  145 (145)
T PF09976_consen  126 DIYLAQGD-------------YDEARAAYQKAL  145 (145)
T ss_pred             HHHHHCCC-------------HHHHHHHHHHhC
Confidence            55555432             245888887763

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=86.32  E-value=1.3  Score=36.82  Aligned_cols=61  Identities=15%  Similarity=0.049  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC
Q psy5931          97 AEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE  159 (173)
Q Consensus        97 deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~  159 (173)
                      +||-.-|..|+.++|+...+-..||.-+-.+-.-.|  .......+-..|..||-+|...+.+
T Consensus        52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~--d~~~A~~~F~kA~~~FqkAv~~~P~  112 (186)
T PF06552_consen   52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP--DTAEAEEYFEKATEYFQKAVDEDPN  112 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            789999999999999999999999998777654333  1223456778899999999987543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0543|consensus

Probab=86.06  E-value=4.6  Score=37.24  Aligned_cols=90  Identities=14%  Similarity=0.168  Sum_probs=62.6

Q ss_pred             CChHHHHHHHHhhcCCCCCcHHHHHHHHHHH-----HHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHH
Q psy5931          13 HLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQ-----VKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKG   87 (173)
Q Consensus        13 ~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq-----~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG   87 (173)
                      ..|+-|+..|..-.+.| .+=+..+..+|-.     +.||+.+      +++.+++.-+|.+--   .++-...=++=||
T Consensus       229 ~~Yerav~~l~~~~~~~-~ee~~~~~~~k~~~~lNlA~c~lKl------~~~~~Ai~~c~kvLe---~~~~N~KALyRrG  298 (397)
T KOG0543|consen  229 KRYERAVSFLEYRRSFD-EEEQKKAEALKLACHLNLAACYLKL------KEYKEAIESCNKVLE---LDPNNVKALYRRG  298 (397)
T ss_pred             HHHHHHHHHhhccccCC-HHHHHHHHHHHHHHhhHHHHHHHhh------hhHHHHHHHHHHHHh---cCCCchhHHHHHH
Confidence            34677778888776665 3555555555532     3455554      567777777766554   3333334444599


Q ss_pred             HHHHHhCCchHHHHHHHHHHccchh
Q psy5931          88 MLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        88 ~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      ..+..+|++|+|-..|..|++++|.
T Consensus       299 ~A~l~~~e~~~A~~df~ka~k~~P~  323 (397)
T KOG0543|consen  299 QALLALGEYDLARDDFQKALKLEPS  323 (397)
T ss_pred             HHHHhhccHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999995

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=84.97  E-value=11  Score=28.77  Aligned_cols=38  Identities=16%  Similarity=0.071  Sum_probs=34.1

Q ss_pred             CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          75 TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        75 ~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      +.++..+.+---|.-+..+|++|+|...+..++.-+|.
T Consensus        33 ~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen   33 SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            67788888888999999999999999999999988776

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=84.56  E-value=1.6  Score=36.35  Aligned_cols=63  Identities=16%  Similarity=0.106  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHHccchhhHHHHHHHHHhHHhh--cCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchhh
Q psy5931          95 RSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ--FTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSR  163 (173)
Q Consensus        95 ~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~--f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~R  163 (173)
                      -+|.|-+.++++...+|.-+.++..||--+..+  |...+     ....+-+.|++=|-+|+++ ++.+.+
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~-----es~~miedAisK~eeAL~I-~P~~hd   70 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGP-----ESKKMIEDAISKFEEALKI-NPNKHD   70 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HH-----HHHHHHHHHHHHHHHHHHH--TT-HH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcc-----hHHHHHHHHHHHHHHHHhc-CCchHH
Confidence            358899999999999999999999999999988  54432     3346788999999999998 565544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=84.48  E-value=1.2  Score=26.46  Aligned_cols=29  Identities=17%  Similarity=0.170  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          84 ALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      ..-|.++.++|++++|-..|..|+.+...
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            34588999999999999999998766543

>KOG1125|consensus

Probab=84.24  E-value=3.8  Score=39.42  Aligned_cols=109  Identities=20%  Similarity=0.127  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHH-HHhhhhccCChhHHHHHHHHhhhccccC------C-----CchhhHHHHHHHHHHHHHhCCchHHHH
Q psy5931          34 VDCFEKIRQQVK-CYLQMAALDGKNQLQEGLEVIEHTNLKY------L-----TKEMTAEFYALKGMLLAQIGRSAEANK  101 (173)
Q Consensus        34 ~daF~KlrEq~k-c~l~~~~~~~~~el~~gL~vi~~tnl~~------F-----~~~qkaE~~~LKG~fl~~Lg~~deA~~  101 (173)
                      .+-|.+|.|+-. .-++.++. ..-+++.||-||=+++=+|      |     -+|.-.-++.==|--|+.-.+++||-.
T Consensus       407 ~~~l~~i~~~fLeaa~~~~~~-~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIs  485 (579)
T KOG1125|consen  407 SSHLAHIQELFLEAARQLPTK-IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAIS  485 (579)
T ss_pred             HHHHHHHHHHHHHHHHhCCCC-CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHH
Confidence            345555655433 33334332 2356899999987765332      1     135556666666777777779999999


Q ss_pred             HHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931         102 AFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus       102 ~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +|-.|+|+.|+++++|+.=|-=|=++.             .=+.|+.=||.|+..
T Consensus       486 AY~rALqLqP~yVR~RyNlgIS~mNlG-------------~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  486 AYNRALQLQPGYVRVRYNLGISCMNLG-------------AYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHhcCCCeeeeehhhhhhhhhhh-------------hHHHHHHHHHHHHHh
Confidence            999999999999999987665554432             234567777777654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=83.62  E-value=2.9  Score=35.89  Aligned_cols=95  Identities=8%  Similarity=0.057  Sum_probs=72.6

Q ss_pred             hCCChHHHHHHHHhhcC-CCCCc-HHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHH
Q psy5931          11 KHHLTSVCLDSLFRLYT-IPSVP-IVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGM   88 (173)
Q Consensus        11 kh~l~~vc~~~L~ki~~-lp~i~-v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~   88 (173)
                      +.|=++-++..+.++.. .|+-+ ..++..   ..+.+|+.      .+++.++++.....--.|-..+-..+.+..-|.
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y---~LG~~y~~------~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANY---WLGQLNYN------KGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCcchHHHHH---HHHHHHHH------cCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            34666777777776544 56543 234443   45778887      467889998888776667777788889988999


Q ss_pred             HHHHhCCchHHHHHHHHHHccchhhH
Q psy5931          89 LLAQIGRSAEANKAFSAAVQMHDVMV  114 (173)
Q Consensus        89 fl~~Lg~~deA~~~F~~Avql~~~~~  114 (173)
                      ++..+|+.++|-+.|...+..+|+..
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            99999999999999999999998754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=83.26  E-value=16  Score=30.90  Aligned_cols=98  Identities=6%  Similarity=0.008  Sum_probs=65.0

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCC-CchhhHHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYL-TKEMTAEF   82 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F-~~~qkaE~   82 (173)
                      ..|.+-..+|-++-+...+.+...+. -+-..+   ...-+.+|++.      +++.++.+.++..-=..- .+......
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~---~~~la~i~~~~------g~~~eA~~~l~~~l~~~~~~~~~~~~~  188 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWA---VHAVAHVLEMQ------GRFKEGIAFMESWRDTWDCSSMLRGHN  188 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHH---HHHHHHHHHHc------CCHHHHHHHHHhhhhccCCCcchhHHH
Confidence            35566777888888888888876642 111112   22336667763      567777777665422111 23444566


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHD  111 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~  111 (173)
                      +...|.++...|+.|+|...|..++...|
T Consensus       189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         189 WWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            77899999999999999999999986655

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3824|consensus

Probab=82.90  E-value=2.5  Score=38.64  Aligned_cols=67  Identities=21%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             hhHHHHHHHHHHHH-HhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          78 MTAEFYALKGMLLA-QIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        78 qkaE~~~LKG~fl~-~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      -|.-+.+||..--+ +-|+.|.|-+.|.+|+.|.|+.|.+-.+.|.|.+.-  .+           -++|=-||.+|...
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~--~~-----------iv~ADq~Y~~ALti  179 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH--NE-----------IVEADQCYVKALTI  179 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh--hh-----------hHhhhhhhheeeee
Confidence            34556777766544 457889999999999999999999999999998875  11           46677899999876


Q ss_pred             C
Q psy5931         157 Q  157 (173)
Q Consensus       157 ~  157 (173)
                      .
T Consensus       180 s  180 (472)
T KOG3824|consen  180 S  180 (472)
T ss_pred             C
Confidence            3

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=82.79  E-value=3.4  Score=35.35  Aligned_cols=100  Identities=19%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      +.+|..|-+||++-.  +..++  ++|++=+.+.+.---.+.+.    ....++.-+..-.++.++-++   .++-+|.+
T Consensus       103 L~ia~yAI~~~l~~P--d~f~R--~~~t~vaeev~~~A~~~~~a----g~~~e~~~~~~~~~l~~~~dm---pd~vrAKl  171 (230)
T PHA02537        103 LEIAEYALEHGLTMP--DQFRR--TLANFVAEEVANAALKAASA----GESVEPYFLRVFLDLTTEWDM---PDEVRAKL  171 (230)
T ss_pred             HHHHHHHHHcCCCCC--ccccC--CchHHHHHHHHHHHHHHHHc----CCCCChHHHHHHHHHHhcCCC---ChHHHHHH
Confidence            567888888887654  34444  66666444444333222222    111233334454555555555   88999999


Q ss_pred             HHHHHHHH---------HHhCCchHHHHHHHHHHccchhh
Q psy5931          83 YALKGMLL---------AQIGRSAEANKAFSAAVQMHDVM  113 (173)
Q Consensus        83 ~~LKG~fl---------~~Lg~~deA~~~F~~Avql~~~~  113 (173)
                      |..-|..+         ...++...|...+..|.+++|+.
T Consensus       172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence            99999998         45677789999999999999974

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=82.07  E-value=3.7  Score=38.63  Aligned_cols=66  Identities=17%  Similarity=0.228  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE  159 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~  159 (173)
                      ++.+.-.|..+...|+.++|...|.+|+.+.|+ .-+|..=|++++....             ...|+..|-+|.++...
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~-------------~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGD-------------NRLAADAYSTAFNLRPG  485 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhcCCC
Confidence            577888899998999999999999999999995 6788888888776542             45699999999988543

>KOG2076|consensus

Probab=81.50  E-value=23  Score=35.94  Aligned_cols=125  Identities=12%  Similarity=0.012  Sum_probs=83.5

Q ss_pred             HHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHH
Q psy5931           8 IARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKG   87 (173)
Q Consensus         8 iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG   87 (173)
                      +.--+|=.+.|..+|..|-..- --...||.-|   +.||-|..      +.+..|+  ..+-.-+..|... |+|-.=|
T Consensus       148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL---~~IyEqrG------d~eK~l~--~~llAAHL~p~d~-e~W~~la  214 (895)
T KOG2076|consen  148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTL---GEIYEQRG------DIEKALN--FWLLAAHLNPKDY-ELWKRLA  214 (895)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHH---HHHHHHcc------cHHHHHH--HHHHHHhcCCCCh-HHHHHHH
Confidence            3333488888999998876541 1233455443   55666642      2222221  0111234456666 9999999


Q ss_pred             HHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931          88 MLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus        88 ~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      ....++|..+.|--.|+.|+|+.|...+--..-...++++...             .-|+.||+|...+.+
T Consensus       215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~-------------~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL-------------KRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH-------------HHHHHHHHHHHhhCC
Confidence            9999999999999999999999998766555556666665432             348999999988754

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=81.44  E-value=6.2  Score=34.42  Aligned_cols=49  Identities=22%  Similarity=0.272  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcC
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFT  129 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~  129 (173)
                      ++..--|.-+.+.|++.+|...|..|+.+.|+-+++|.-=|.-||++-.
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence            4444478899999999999999999999999999999999999999864

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=80.88  E-value=2.4  Score=39.88  Aligned_cols=48  Identities=19%  Similarity=0.138  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCC
Q psy5931          79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNP  131 (173)
Q Consensus        79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~  131 (173)
                      .++-|.+.|.++...|++++|...|..|++++|..+. |.-    |+++.+..
T Consensus       452 s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt-~~~----~~~~~f~~  499 (517)
T PRK10153        452 SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT-LYW----IENLVFQT  499 (517)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-HHH----HHhccccc
Confidence            4788999999999999999999999999999999885 643    45555444

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=80.82  E-value=6.1  Score=32.95  Aligned_cols=54  Identities=24%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             HHHHHHHhhhccc-cCC--CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          59 LQEGLEVIEHTNL-KYL--TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        59 l~~gL~vi~~tnl-~~F--~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      ++.+|+..+.+=. +.|  ......-+..|-|.+.-++|+.|||-+.|+..++.-..
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            7777776655433 233  23455679999999999999999999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.64
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.6
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.29
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.25
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.19
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.18
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.17
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.11
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.1
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.06
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.03
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.01
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.0
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.99
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.98
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.95
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.93
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.93
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.91
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.9
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.88
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.88
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.86
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.86
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.85
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.85
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.84
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.84
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.84
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.83
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.83
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.82
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.82
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.8
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.79
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.78
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.76
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.76
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.76
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.74
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.73
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.72
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.72
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.71
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.69
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.66
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.66
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.66
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.64
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.64
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.64
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.63
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.62
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.62
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.61
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.61
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.6
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.6
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.6
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.59
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.59
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.58
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.58
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.55
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.55
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.53
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.52
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.5
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.49
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.49
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.47
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.47
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.47
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.45
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.41
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.4
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.4
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.39
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.39
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.39
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.39
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.38
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.37
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.36
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.35
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.35
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.33
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.33
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.32
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.32
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.31
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.31
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.28
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.28
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.28
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.27
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.25
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.24
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.22
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.22
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.21
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.19
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.16
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.14
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.12
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.1
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.1
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.1
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.09
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.09
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.01
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.99
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.95
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.94
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.94
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.92
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.9
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.87
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.86
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.85
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.84
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.8
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.78
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.77
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.76
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.74
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.72
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.71
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.71
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.7
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.7
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.64
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.63
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.62
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.61
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.59
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.52
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.48
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.43
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.42
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.38
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.28
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.24
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.2
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.2
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.19
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.17
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.15
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.1
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.1
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.01
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.98
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.85
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.85
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	95.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.65
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.62
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.56
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.19
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.17
2kat_A	115	Uncharacterized protein; NESG, structure, structur	94.73
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	94.18
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	93.72
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	93.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	93.38
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.3
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	93.21
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	92.62
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	91.53
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	91.48
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	91.22
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	91.18
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	90.87
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	90.24
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	89.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	89.0
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	88.01
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	87.01
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	86.09
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	85.6
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	83.2
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	82.11
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	81.94
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	81.82
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	81.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	80.35
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	80.29

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.64  E-value=1.4e-07  Score=68.48  Aligned_cols=111  Identities=9%  Similarity=0.089  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931          38 EKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW  117 (173)
Q Consensus        38 ~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW  117 (173)
                      ...++++.+|++.      +++.++++..+..--   ..+..++.+..+|..+.++|++++|-+.|..|+.++|+.+++|
T Consensus        14 ~~~~~~G~~~~~~------g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A           14 QEEKNKGNEYFKK------GDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             HHHHHHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHc------CCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence            3467889999984      567788777765432   2456789999999999999999999999999999999999999


Q ss_pred             HHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC-CCchhhhhHHHHh
Q psy5931         118 ALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ-KESMSRKYLAKVD  170 (173)
Q Consensus       118 ~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~-~~~k~Rk~laRiL  170 (173)
                      ...|..+..+-.             -..|+.+|-+|+.++ ++..++..|+++|
T Consensus        85 ~~lg~~~~~~~~-------------~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           85 IRKAACLVAMRE-------------WSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCC-------------HHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999998877631             356999999999986 4566788888765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.60  E-value=3.1e-07  Score=68.08  Aligned_cols=141  Identities=11%  Similarity=0.038  Sum_probs=101.1

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY   83 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~   83 (173)
                      ++|.+.|+.|=.|-++..+.+....+    .+--...-.-++||+++      +++.++++.++..--   ..+..++.+
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~----p~~~~~~~~la~~y~~~------~~~~~A~~~~~~al~---~~p~~~~a~   68 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSP----RQKSIKGFYFAKLYYEA------KEYDLAKKYICTYIN---VQERDPKAH   68 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSH----HHHHTTHHHHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccC----cccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHH---hCCCCHHHH
Confidence            35667777888888999998865432    12223334568999985      567777777765432   245678999


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHH-HHchhCC-Cch
Q psy5931          84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFM-HACRHQK-ESM  161 (173)
Q Consensus        84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyL-qA~~~~~-~~k  161 (173)
                      ...|.++.++|++++|...|..|+.++|+.+.+|..-|..+.++-..+.             |+.+|+ +|++++. +..
T Consensus        69 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-------------aa~~~~~~al~l~P~~~~  135 (150)
T 4ga2_A           69 RFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG-------------RAKYWVERAAKLFPGSPA  135 (150)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS-------------HHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH-------------HHHHHHHHHHHhCcCCHH
Confidence            9999999999999999999999999999999999999998877654332             777887 5888753 334


Q ss_pred             hhhhHHHHh
Q psy5931         162 SRKYLAKVD  170 (173)
Q Consensus       162 ~Rk~laRiL  170 (173)
                      .....++++
T Consensus       136 ~~~l~~~ll  144 (150)
T 4ga2_A          136 VYKLKEQLL  144 (150)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            455555554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.29  E-value=2.6e-06  Score=59.67  Aligned_cols=109  Identities=15%  Similarity=0.053  Sum_probs=84.5

Q ss_pred             HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931          39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA  118 (173)
Q Consensus        39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~  118 (173)
                      .+.+.+.+++..      +++.++++..+..--   ..+..++.+...|..+.++|++++|...|..|++++|+.+++|.
T Consensus         6 ~~~~~g~~~~~~------~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (126)
T 3upv_A            6 EARLEGKEYFTK------SDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI   76 (126)
T ss_dssp             HHHHHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHh------cCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            456778888874      567777776654322   13455799999999999999999999999999999999999999


Q ss_pred             HHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC-------CCchhhhhHHHH
Q psy5931         119 LWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ-------KESMSRKYLAKV  169 (173)
Q Consensus       119 ~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~-------~~~k~Rk~laRi  169 (173)
                      ..|..+..+-.             -..|+.+|-+|....       ++...+..|.++
T Consensus        77 ~lg~~~~~~~~-------------~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~  121 (126)
T 3upv_A           77 RKATAQIAVKE-------------YASALETLDAARTKDAEVNNGSSAREIDQLYYKA  121 (126)
T ss_dssp             HHHHHHHHTTC-------------HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-------------HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence            99998877631             356999999999875       344556666655

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.25  E-value=2.1e-05  Score=60.62  Aligned_cols=154  Identities=10%  Similarity=0.082  Sum_probs=109.2

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHH-------------HHHHHHHHhhhhccCChhHHHHHHHHhhhc
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEK-------------IRQQVKCYLQMAALDGKNQLQEGLEVIEHT   69 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~K-------------lrEq~kc~l~~~~~~~~~el~~gL~vi~~t   69 (173)
                      ..-|....+.|-++-++..+.+...+. -.-.+++.-             ..+.+.||..+      +++.++++.++..
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~a   80 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKN------RNYDKAYLFYKEL   80 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC------CCHHHHHHHHHHH
Confidence            445677778899999999998875531 112233332             12267888875      4566777666554


Q ss_pred             cccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh-----------cCCCCCCCCCc
Q psy5931          70 NLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ-----------FTNPSPPGSAP  138 (173)
Q Consensus        70 nl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~-----------f~~~~~~~~~~  138 (173)
                      --   ..|..++.+...|.++..+|++++|-..|..+++++|+.+.+|..-|......           |..-..+   .
T Consensus        81 l~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~---~  154 (208)
T 3urz_A           81 LQ---KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP---T  154 (208)
T ss_dssp             HH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC---C
T ss_pred             HH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC---C
Confidence            32   13556889999999999999999999999999999999999999999876332           1111100   1


Q ss_pred             hhhh--------------HHHHHHHHHHHchhCCCchhhhhHHHH
Q psy5931         139 NMVL--------------GVFAVTCFMHACRHQKESMSRKYLAKV  169 (173)
Q Consensus       139 ~~~~--------------~~~Ai~CyLqA~~~~~~~k~Rk~laRi  169 (173)
                      ...+              -..|+.+|-+|++...+..+++.+.||
T Consensus       155 ~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i  199 (208)
T 3urz_A          155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            1111              246999999999998888889988887

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.19  E-value=4.5e-06  Score=61.62  Aligned_cols=74  Identities=19%  Similarity=0.255  Sum_probs=56.9

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +...+.+...|.++.++|++++|-+.|..+++++|..+.+|..-|..+..+-.             -..|+.+|-+|+..
T Consensus       104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~  170 (184)
T 3vtx_A          104 TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL-------------RDEAVKYFKKALEK  170 (184)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhC
Confidence            34467778888888888888889888988888888888888888887766531             35689999999887


Q ss_pred             CCCchhhh
Q psy5931         157 QKESMSRK  164 (173)
Q Consensus       157 ~~~~k~Rk  164 (173)
                       ++..++-
T Consensus       171 -~p~~a~~  177 (184)
T 3vtx_A          171 -EEKKAKY  177 (184)
T ss_dssp             -THHHHHH
T ss_pred             -CccCHHH
Confidence             3444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.18  E-value=1.1e-05  Score=59.12  Aligned_cols=122  Identities=15%  Similarity=0.081  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhcccc-CCC-------chhhHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy5931          35 DCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLK-YLT-------KEMTAEFYALKGMLLAQIGRSAEANKAFSA  105 (173)
Q Consensus        35 daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~-~F~-------~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~  105 (173)
                      +.-..+++.+..++...... .-.-|..+|+++...... ..+       .+..+.++...|..+.++|++++|...|..
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34566788888888742111 011266666665543221 111       466778999999999999999999999999


Q ss_pred             HHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCch--hhhhHHHH
Q psy5931         106 AVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESM--SRKYLAKV  169 (173)
Q Consensus       106 Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k--~Rk~laRi  169 (173)
                      |+.++|+.+++|..-|..+..+-.             -..|+.+|-+|+.++.+..  .+..|.++
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~-------------~~~A~~~~~~al~l~p~~~~~~~~~l~~~  141 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWK-------------LDEAEEDLKLLLRNHPAAASVVAREMKIV  141 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhc-------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            999999999999999998877631             3569999999999865543  36666655

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.17  E-value=7.8e-06  Score=62.00  Aligned_cols=101  Identities=9%  Similarity=0.052  Sum_probs=83.3

Q ss_pred             HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931          39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA  118 (173)
Q Consensus        39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~  118 (173)
                      .+...+.+++++      +++.++++..+..--   ..|..++.+...|..+.++|++++|-..|..|+.++|+.+.+|.
T Consensus        38 ~~~~lg~~~~~~------g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           38 DIYSYAYDFYNK------GRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             HHHHHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             HHHHHHHHHHHc------CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            456678888884      567888887766543   24667889999999999999999999999999999999999999


Q ss_pred             HHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCch
Q psy5931         119 LWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESM  161 (173)
Q Consensus       119 ~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k  161 (173)
                      .-|..+..+-.             -..|+.||-+|+....+..
T Consensus       109 ~lg~~~~~lg~-------------~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          109 HTGQCQLRLKA-------------PLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHTTC-------------HHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCHH
Confidence            99988877642             3569999999999876554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.12  E-value=2.5e-05  Score=57.60  Aligned_cols=142  Identities=13%  Similarity=0.138  Sum_probs=108.5

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      +.+|.+-++.|-++-++..+.+...+ |+-  .++.   ...+.||.++      +++.++++.++...-   ..+..++
T Consensus         9 ~~lG~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~---~~la~~~~~~------~~~~~a~~~~~~~~~---~~~~~~~   74 (184)
T 3vtx_A            9 MDIGDKKRTKGDFDGAIRAYKKVLKADPNN--VETL---LKLGKTYMDI------GLPNDAIESLKKFVV---LDTTSAE   74 (184)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHH---HHHHHHHHHT------TCHHHHHHHHHHHHH---HCCCCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHH---HHHHHHHHHC------CCHHHHHHHHHHHHh---cCchhHH
Confidence            56899999999999999999997654 332  3444   3457888885      456777777666544   2345678


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC-CCc
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ-KES  160 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~-~~~  160 (173)
                      .+...|.+....|++++|.+.|..|+.++|+.+.+|...|..+..+-.             -..|+.+|-+++... ++.
T Consensus        75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~-------------~~~A~~~~~~~l~~~p~~~  141 (184)
T 3vtx_A           75 AYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE-------------HDKAIEAYEKTISIKPGFI  141 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC-------------chhHHHHHHHHHHhcchhh
Confidence            899999999999999999999999999999999999999998877631             356999999999874 233


Q ss_pred             hhhhhHHHHhh
Q psy5931         161 MSRKYLAKVDY  171 (173)
Q Consensus       161 k~Rk~laRiLW  171 (173)
                      .+...++.++.
T Consensus       142 ~~~~~lg~~~~  152 (184)
T 3vtx_A          142 RAYQSIGLAYE  152 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            44455555543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.11  E-value=2.3e-05  Score=60.83  Aligned_cols=141  Identities=11%  Similarity=-0.017  Sum_probs=84.5

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ...|.+..+.|-++-++..+.+.-.+. -.-.+++.   ..+.|+++.      +++.++++.++..--   ..|..++.
T Consensus         9 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~---~lg~~~~~~------g~~~~A~~~~~~al~---~~P~~~~a   75 (217)
T 2pl2_A            9 LRLGVQLYALGRYDAALTLFERALKEN-PQDPEALY---WLARTQLKL------GLVNPALENGKTLVA---RTPRYLGG   75 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHH---HHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH---HHHHHHHHc------CCHHHHHHHHHHHHH---hCCCcHHH
Confidence            456777788888888888888866642 12223332   345666663      345555554443321   13455667


Q ss_pred             HHHHHHHHHHh-----------CCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHH
Q psy5931          83 YALKGMLLAQI-----------GRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFM  151 (173)
Q Consensus        83 ~~LKG~fl~~L-----------g~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyL  151 (173)
                      +...|.++.++           |++++|...|..|+.++|+.+.+|...|..+..+-.             -..|+.+|-
T Consensus        76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-------------~~~A~~~~~  142 (217)
T 2pl2_A           76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE-------------RDKAEASLK  142 (217)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC-------------hHHHHHHHH
Confidence            77777777777           777777777777777777777777777776655421             234566666


Q ss_pred             HHchhCCCchhhhhHHHH
Q psy5931         152 HACRHQKESMSRKYLAKV  169 (173)
Q Consensus       152 qA~~~~~~~k~Rk~laRi  169 (173)
                      +|+...++..++..++++
T Consensus       143 ~al~~~~~~~~~~~la~~  160 (217)
T 2pl2_A          143 QALALEDTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHCCCHHHHHHHHHH
T ss_pred             HHHhcccchHHHHHHHHH
Confidence            665554333334444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.10  E-value=1.1e-05  Score=59.22  Aligned_cols=102  Identities=9%  Similarity=0.084  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHH
Q psy5931          37 FEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKA  116 (173)
Q Consensus        37 F~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ka  116 (173)
                      ...+...+.++++.      +++.++++..+..--.   .+..++.+...|..+.++|++++|...|..|+.++|+.+.+
T Consensus        11 a~~~~~~g~~~~~~------g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~   81 (164)
T 3sz7_A           11 SDKLKSEGNAAMAR------KEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA   81 (164)
T ss_dssp             HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHc------CCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence            34566778888874      5677777776654321   24468999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931         117 WALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKES  160 (173)
Q Consensus       117 W~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~  160 (173)
                      |...|..+..+-.             -..|+.+|-+++....+.
T Consensus        82 ~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~  112 (164)
T 3sz7_A           82 WSRLGLARFDMAD-------------YKGAKEAYEKGIEAEGNG  112 (164)
T ss_dssp             HHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHccC-------------HHHHHHHHHHHHHhCCCc
Confidence            9999998877631             356999999999875433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.06  E-value=1.3e-05  Score=57.70  Aligned_cols=114  Identities=14%  Similarity=0.073  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          33 IVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        33 v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      +.|.-...++....++..      +++.++++..+..--   -.|..++.+..+|..+.++|++++|-+.|..|+.++|.
T Consensus         4 ~~d~A~a~~~lG~~~~~~------~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~   74 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQ------KDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE   74 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence            456666777778888874      456666665554321   13556889999999999999999999999999999987


Q ss_pred             hH-------HHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhHHH
Q psy5931         113 MV-------KAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAK  168 (173)
Q Consensus       113 ~~-------kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~laR  168 (173)
                      .+       ++|..-|.....+-             --..|+.+|-+|.....+....+.|..
T Consensus        75 ~~~~~~~~a~~~~~lg~~~~~~~-------------~~~~A~~~~~kal~~~~~~~~~~~l~~  124 (127)
T 4gcn_A           75 TRADYKLIAKAMSRAGNAFQKQN-------------DLSLAVQWFHRSLSEFRDPELVKKVKE  124 (127)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHhhCcCHHHHHHHHH
Confidence            64       45555565554442             246799999999988776666555543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.03  E-value=5.5e-05  Score=57.73  Aligned_cols=130  Identities=10%  Similarity=-0.010  Sum_probs=98.4

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCC-CcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPS-VPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~-i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ....|.+..+.|-++-++..+.+...+.. -.. +++.   ..+.||+.+      +++.++++.++..--   ..+..+
T Consensus        10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~---~~~~~~~~~------~~~~~A~~~~~~al~---~~p~~~   76 (228)
T 4i17_A           10 LKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS-VTAY---NCGVCADNI------KKYKEAADYFDIAIK---KNYNLA   76 (228)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH-HHHH---HHHHHHHHT------TCHHHHHHHHHHHHH---TTCSHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc-HHHH---HHHHHHHHh------hcHHHHHHHHHHHHH---hCcchH
Confidence            35678888899999999999999776532 222 2332   268899985      567777777665533   245578


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH-------HHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHH
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV-------KAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHA  153 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~-------kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA  153 (173)
                      +.+...|.++.++|++++|.+.|..++.++|+.+       .+|..-|.....+-             --..|+.+|-+|
T Consensus        77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~-------------~~~~A~~~~~~a  143 (228)
T 4i17_A           77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG-------------NIEKAEENYKHA  143 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT-------------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc-------------cHHHHHHHHHHH
Confidence            8999999999999999999999999999999988       55666666654432             246799999999


Q ss_pred             chhC
Q psy5931         154 CRHQ  157 (173)
Q Consensus       154 ~~~~  157 (173)
                      ++..
T Consensus       144 l~~~  147 (228)
T 4i17_A          144 TDVT  147 (228)
T ss_dssp             TTSS
T ss_pred             HhcC
Confidence            9884

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.01  E-value=4.9e-05  Score=71.41  Aligned_cols=142  Identities=14%  Similarity=0.104  Sum_probs=107.7

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      .+.+|.+.+++|-++-++..+.+.-.+ |+  -.++...   .+.+|.++      +++.++++..+..--   -.+..+
T Consensus        12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--~~~a~~n---Lg~~l~~~------g~~~eA~~~~~~Al~---l~P~~~   77 (723)
T 4gyw_A           12 LNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSN---LASVLQQQ------GKLQEALMHYKEAIR---ISPTFA   77 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHH---HHHHHHHT------TCHHHHHHHHHHHHH---HCTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH---HHHHHHHc------CCHHHHHHHHHHHHH---hCCCCH
Confidence            577899999999999999999996553 33  2344443   47788775      456666665554321   145678


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-C
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-E  159 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~  159 (173)
                      +.+...|..+.++|++++|.+.|..|++++|+.+.+|..-|..+..+-             --..|+.+|-+|++... .
T Consensus        78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g-------------~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A           78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG-------------NIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999999887763             14569999999998853 3


Q ss_pred             chhhhhHHHHh
Q psy5931         160 SMSRKYLAKVD  170 (173)
Q Consensus       160 ~k~Rk~laRiL  170 (173)
                      ..+...++.++
T Consensus       145 ~~a~~~L~~~l  155 (723)
T 4gyw_A          145 PDAYCNLAHCL  155 (723)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHhhhhhHH
Confidence            44555555554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.00  E-value=6.1e-05  Score=52.55  Aligned_cols=114  Identities=13%  Similarity=0.018  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHH
Q psy5931          37 FEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKA  116 (173)
Q Consensus        37 F~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ka  116 (173)
                      ...+...+.+++..      +++.++++..+..--..-..+.....+...|..+.++|++++|.+.|..+++++|+.+.+
T Consensus        28 ~~~~~~~a~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           28 VEQLRKEGNELFKC------GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             HHHHHHHHHHHHTT------TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             HHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            44567788888874      578888888776543222334468999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHH
Q psy5931         117 WALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKV  169 (173)
Q Consensus       117 W~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRi  169 (173)
                      |...|..+..+-.             -..|+.+|-++..... +...+..++++
T Consensus       102 ~~~~a~~~~~~~~-------------~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          102 LYRRSQALEKLGR-------------LDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHHHHTC-------------HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-------------HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            9999998777631             3568999999998753 34455555554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.00  E-value=2.3e-05  Score=57.88  Aligned_cols=100  Identities=12%  Similarity=0.049  Sum_probs=80.5

Q ss_pred             ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCC
Q psy5931          55 GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPP  134 (173)
Q Consensus        55 ~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~  134 (173)
                      .+.++.++++.+...--   .++..+..+..-|.++.++|++++|.+.|..|+.++|+.+.+|...|.....+-.     
T Consensus         9 ~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-----   80 (150)
T 4ga2_A            9 SKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-----   80 (150)
T ss_dssp             CHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----
T ss_pred             HcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc-----
Confidence            36788888888877554   5778888888899999999999999999999999999999999999998877631     


Q ss_pred             CCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHHh
Q psy5931         135 GSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKVD  170 (173)
Q Consensus       135 ~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRiL  170 (173)
                              -..|+.+|-+|+.... +..+.-.++.++
T Consensus        81 --------~~~A~~~~~~al~~~p~~~~~~~~la~~~  109 (150)
T 4ga2_A           81 --------TDKAVECYRRSVELNPTQKDLVLKIAELL  109 (150)
T ss_dssp             --------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                    3569999999998753 234445555543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.99  E-value=6.3e-05  Score=65.09  Aligned_cols=114  Identities=6%  Similarity=0.045  Sum_probs=79.6

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhH-HHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQ-LQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~e-l~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ...++.+-.+.|-++-++..+.+.-.+. -.-.+++.   ..+.++..+      ++ +.++++.++..--   ..+..+
T Consensus       100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~---~~g~~l~~~------g~d~~eAl~~~~~al~---l~P~~~  166 (382)
T 2h6f_A          100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWH---FRRVLLKSL------QKDLHEEMNYITAIIE---EQPKNY  166 (382)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHH---HHHHHHHHT------TCCHHHHHHHHHHHHH---HCTTCH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHH---HHHHHHHHc------ccCHHHHHHHHHHHHH---HCCCCH
Confidence            3567778888898999999999876542 12223333   335566664      33 6666666655433   234567


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF  128 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f  128 (173)
                      +.+..+|.++.++|++++|-..|..|+.++|..+.+|..-|..+..+-
T Consensus       167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g  214 (382)
T 2h6f_A          167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK  214 (382)
T ss_dssp             HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC
Confidence            788888888888888888888888888888888888888887777664

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.98  E-value=0.00013  Score=56.23  Aligned_cols=113  Identities=15%  Similarity=0.256  Sum_probs=51.2

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ...|....+.|-++-++..+.+...+ |+-+  +++.   ..+.||+.+      +++.++++.++..--..-.++..++
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~---~l~~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~   75 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSP--YIYN---RRAVCYYEL------AKYDLAQKDIETYFSKVNATKAKSA   75 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS--TTHH---HHHHHHHHT------TCHHHHHHHHHHHHTTSCTTTCCHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HHHH---HHHHHHHHH------hhHHHHHHHHHHHHhccCchhHHHH
Confidence            34555555555555555555554332 2111  1211   223355543      2333343333322111112222344


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHh
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEA  126 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~  126 (173)
                      .+...|.++.++|++++|.+.|..|+.++|+.+.+|..-|..+..
T Consensus        76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  120 (272)
T 3u4t_A           76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN  120 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            455555555555555555555555555555555555555554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.95  E-value=4e-05  Score=52.39  Aligned_cols=116  Identities=10%  Similarity=0.050  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          33 IVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        33 v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      ...-...+...+.++++.      +++.++++.++..--   ..+..++.+...|..+..+|++++|.+.|..++.++|.
T Consensus        12 ~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   82 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQK------GDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT   82 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHT------TCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred             CcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            444566777889999884      456666666665422   12345889999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHHh
Q psy5931         113 MVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKVD  170 (173)
Q Consensus       113 ~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRiL  170 (173)
                      .+.+|...|..+..+-  +           -..|+.+|-++..... +..+...+++++
T Consensus        83 ~~~~~~~la~~~~~~~--~-----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  128 (133)
T 2lni_A           83 FIKGYTRKAAALEAMK--D-----------YTKAMDVYQKALDLDSSCKEAADGYQRCM  128 (133)
T ss_dssp             CHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHh--h-----------HHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999998876653  1           3568999999988743 334555566554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.93  E-value=2.7e-05  Score=56.23  Aligned_cols=86  Identities=14%  Similarity=-0.031  Sum_probs=69.1

Q ss_pred             ccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHH
Q psy5931          71 LKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCF  150 (173)
Q Consensus        71 l~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~Cy  150 (173)
                      +-|. .|+.||-+..+|..+.+.|++++|-+.|..|++++|+.+.+|..-|..+.++-             --..|+.+|
T Consensus         5 ~a~i-nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-------------~~~~A~~~~   70 (126)
T 4gco_A            5 LAYI-NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM-------------EFQRALDDC   70 (126)
T ss_dssp             --CC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------------CHHHHHHHH
T ss_pred             HHHH-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc-------------cHHHHHHHH
Confidence            3344 46789999999999999999999999999999999999999999998877663             135699999


Q ss_pred             HHHchhCC-CchhhhhHHHHh
Q psy5931         151 MHACRHQK-ESMSRKYLAKVD  170 (173)
Q Consensus       151 LqA~~~~~-~~k~Rk~laRiL  170 (173)
                      -+|+..+. +.++.-.++.++
T Consensus        71 ~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           71 DTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHH
Confidence            99998853 345555555554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.93  E-value=0.00075  Score=51.32  Aligned_cols=157  Identities=14%  Similarity=0.083  Sum_probs=106.4

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCC----chhh
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLT----KEMT   79 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~----~~qk   79 (173)
                      ..|.+..+.|-++-++..+.+...+. -.-.++.   ...+.||+.+      +++.++++.++..--.+-.    ....
T Consensus        47 ~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~---~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~  116 (228)
T 4i17_A           47 NCGVCADNIKKYKEAADYFDIAIKKN-YNLANAY---IGKSAAYRDM------KNNQEYIATLTEGIKAVPGNATIEKLY  116 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHH---HHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHH---HHHHHHHHHc------ccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            46888889999999999999977652 2233333   3467888885      4566666666543221111    2234


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccchh--hHHHHHHHHHhHHhhcCC--------CCCC-C-----CCchhhhH
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV--MVKAWALWGDYMEAQFTN--------PSPP-G-----SAPNMVLG  143 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~--~~kaW~~WG~~~d~~f~~--------~~~~-~-----~~~~~~~~  143 (173)
                      ++.+...|..+.++|++++|.+.|..|+.++|+  .+.+|...|......-..        .+.. .     .......-
T Consensus       117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  196 (228)
T 4i17_A          117 AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAF  196 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999  999999888876554322        0000 0     00001112


Q ss_pred             HHHHHHHHHHchhCC-CchhhhhHHHHh
Q psy5931         144 VFAVTCFMHACRHQK-ESMSRKYLAKVD  170 (173)
Q Consensus       144 ~~Ai~CyLqA~~~~~-~~k~Rk~laRiL  170 (173)
                      ..|+.+|-+|..... +..++..+++|-
T Consensus       197 ~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          197 KKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            679999999998753 345667777664

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.91  E-value=0.00056  Score=53.41  Aligned_cols=161  Identities=10%  Similarity=0.015  Sum_probs=106.4

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CC-CcHHHHHHHHHHHHHHHhhhhcc--CChhHHHHHHHHhhhccccCCCchh
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PS-VPIVDCFEKIRQQVKCYLQMAAL--DGKNQLQEGLEVIEHTNLKYLTKEM   78 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~-i~v~daF~KlrEq~kc~l~~~~~--~~~~el~~gL~vi~~tnl~~F~~~q   78 (173)
                      ..+|.+..+.|-++-++..+.+...+ |+ ....++..   ..+.||+.+...  .+.+++.++++.++..--.+-..+.
T Consensus        56 ~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~---~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  132 (261)
T 3qky_A           56 FYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY---ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL  132 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH---HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH---HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh
Confidence            45677788888888888888887664 42 23444433   347788761100  0125677777777665433333333


Q ss_pred             hHHHH--------------HHHHHHHHHhCCchHHHHHHHHHHccchh---hHHHHHHHHHhHHhhcCCCCCCCCCchhh
Q psy5931          79 TAEFY--------------ALKGMLLAQIGRSAEANKAFSAAVQMHDV---MVKAWALWGDYMEAQFTNPSPPGSAPNMV  141 (173)
Q Consensus        79 kaE~~--------------~LKG~fl~~Lg~~deA~~~F~~Avql~~~---~~kaW~~WG~~~d~~f~~~~~~~~~~~~~  141 (173)
                      ..+..              ...|.++.+.|++++|...|..++..+|+   .+.+|...|.....+.....   ......
T Consensus       133 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~---~~~~~~  209 (261)
T 3qky_A          133 VDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSV---RARQPE  209 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSC---GGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccch---hhcccc
Confidence            33333              77899999999999999999999999998   77899999988776642210   001112


Q ss_pred             hHHHHHHHHHHHchhCCCc----hhhhhHHHH
Q psy5931         142 LGVFAVTCFMHACRHQKES----MSRKYLAKV  169 (173)
Q Consensus       142 ~~~~Ai~CyLqA~~~~~~~----k~Rk~laRi  169 (173)
                      --..|+.+|-+++..+.+.    +++..+.++
T Consensus       210 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~  241 (261)
T 3qky_A          210 RYRRAVELYERLLQIFPDSPLLRTAEELYTRA  241 (261)
T ss_dssp             HHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            3467999999999876654    456666655

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.90  E-value=0.00017  Score=47.83  Aligned_cols=109  Identities=14%  Similarity=0.031  Sum_probs=83.2

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ....|.+....|-++-++..+.+...+ |+-  .++   ....+.||+.+      +++.++++.++..--.   .+...
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~---~~~~a~~~~~~------~~~~~A~~~~~~~~~~---~~~~~   72 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVL---YSNRSAAYAKK------GDYQKAYEDGCKTVDL---KPDWG   72 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH---HHHHHHHHHHH------TCHHHHHHHHHHHHHH---CTTCH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHH---HHHHHHHHHhh------ccHHHHHHHHHHHHHh---CcccH
Confidence            356788888999999999999997654 322  122   34557788874      4566776666554321   23457


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhH
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYM  124 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~  124 (173)
                      +.+...|..+.++|++++|.+.|..++.++|+.+.+|...+...
T Consensus        73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            89999999999999999999999999999999999998887764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.88  E-value=0.00022  Score=49.67  Aligned_cols=113  Identities=12%  Similarity=0.028  Sum_probs=85.3

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ....|....+.|-++-++..+.+...+.. .-.+...-....+.||+.+      +++.++++.++..--.   .+...+
T Consensus        31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~  100 (148)
T 2dba_A           31 LRKEGNELFKCGDYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKL------EDYDKAETEASKAIEK---DGGDVK  100 (148)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHH---TSCCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHH------ccHHHHHHHHHHHHhh---CccCHH
Confidence            35678899999999999999999877532 1111233344567888875      4677777766554321   233478


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhH
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYM  124 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~  124 (173)
                      .+...|..+..+|++++|.+.|..++.++|+.+.+|...+...
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            8999999999999999999999999999999999998777654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.88  E-value=0.00028  Score=48.07  Aligned_cols=113  Identities=13%  Similarity=0.097  Sum_probs=86.2

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      +...|.+..+.|-++.++..+.+...+..-. .++   ....+.||+..      +++.++++.++..--.   .+..++
T Consensus        19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~---~~~la~~~~~~------~~~~~A~~~~~~a~~~---~~~~~~   85 (133)
T 2lni_A           19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-AKL---YSNRAACYTKL------LEFQLALKDCEECIQL---EPTFIK   85 (133)
T ss_dssp             HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-HHH---HHHHHHHHTTT------TCHHHHHHHHHHHHHH---CTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHH---HHHHHHHHHHh------ccHHHHHHHHHHHHHh---CCCchH
Confidence            4567888999999999999999987653111 233   34557788774      4566777666554331   234678


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      .+...|..+.++|++++|.+.|..++.++|..+.+|...|.....+
T Consensus        86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998888766543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.00021  Score=53.87  Aligned_cols=131  Identities=15%  Similarity=0.072  Sum_probs=79.3

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHH------------------------HHHHHHHHhhhhccCChhH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEK------------------------IRQQVKCYLQMAALDGKNQ   58 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~K------------------------lrEq~kc~l~~~~~~~~~e   58 (173)
                      ..+|.+-.+.|-++-++..+.+...+..-  .+++.+                        ....+.+++..      ++
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  154 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK------SD  154 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT------TC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch--hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh------cC
Confidence            45677778888888888888887664321  111111                        12334444442      34


Q ss_pred             HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCc
Q psy5931          59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAP  138 (173)
Q Consensus        59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~  138 (173)
                      +.++++.++..--.   .+..++.+...|..+.++|++++|.+.|..++.++|+.+.+|...|..+..+-  +       
T Consensus       155 ~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g--~-------  222 (258)
T 3uq3_A          155 WPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK--E-------  222 (258)
T ss_dssp             HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--C-------
T ss_pred             HHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--h-------
Confidence            55666655554221   12345667777777777777777777777777777777777777766665552  1       


Q ss_pred             hhhhHHHHHHHHHHHchhC
Q psy5931         139 NMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       139 ~~~~~~~Ai~CyLqA~~~~  157 (173)
                          -..|+.+|-+|....
T Consensus       223 ----~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          223 ----YASALETLDAARTKD  237 (258)
T ss_dssp             ----HHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhC
Confidence                245777777777664

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.86  E-value=0.00011  Score=49.76  Aligned_cols=109  Identities=8%  Similarity=0.051  Sum_probs=82.1

Q ss_pred             HHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh------
Q psy5931          40 IRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM------  113 (173)
Q Consensus        40 lrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~------  113 (173)
                      ....+.+++..      +++.++++.++..--.   .+..++.+...|..+...|++++|...|..++.+.|..      
T Consensus         7 ~~~l~~~~~~~------~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   77 (131)
T 1elr_A            7 EKELGNDAYKK------KDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ   77 (131)
T ss_dssp             HHHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHh------cCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence            34456666663      4566666666543221   23457889999999999999999999999999999987      


Q ss_pred             -HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhHHHHh
Q psy5931         114 -VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVD  170 (173)
Q Consensus       114 -~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~laRiL  170 (173)
                       +.+|...|..+...-  +           -..|+.+|-++.....+...+..+.++.
T Consensus        78 ~~~~~~~la~~~~~~~--~-----------~~~A~~~~~~~~~~~~~~~~~~~l~~~~  122 (131)
T 1elr_A           78 IAKAYARIGNSYFKEE--K-----------YKDAIHFYNKSLAEHRTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--c-----------HHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence             888988888876652  1           3568999999999877777777777764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.85  E-value=0.00044  Score=49.12  Aligned_cols=128  Identities=14%  Similarity=0.055  Sum_probs=87.5

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ...|.+..+.|-++.++..+.+...+.. +-.++   ....+.++...      +++.++++.++..--.   .+...+.
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~~   78 (186)
T 3as5_A           12 RDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDV---ALHLGIAYVKT------GAVDRGTELLERSLAD---APDNVKV   78 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHH---HHHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHH---HHHHHHHHHHc------CCHHHHHHHHHHHHhc---CCCCHHH
Confidence            4567788888899999999988776521 11222   23446677764      4566666665543221   2345678


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +...|.++...|++++|.+.|..++.++|..+.+|...|..+...-.             -..|+.+|-++...
T Consensus        79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------------~~~A~~~~~~~~~~  139 (186)
T 3as5_A           79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR-------------FDEAIDSFKIALGL  139 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc-------------HHHHHHHHHHHHhc
Confidence            88889999999999999999999999988888888888877665421             24566666666655

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.85  E-value=4.6e-05  Score=57.66  Aligned_cols=83  Identities=11%  Similarity=-0.117  Sum_probs=68.7

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR  155 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~  155 (173)
                      .|..++.+...|..+.+.|++++|...|..|+.++|+.+.+|..-|..+..+-             --..|+.||-+|+.
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g-------------~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE-------------QFQQAADLYAVAFA   98 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-------------cHHHHHHHHHHHHh
Confidence            46778889999999999999999999999999999999999999998887663             14579999999999


Q ss_pred             hCC-CchhhhhHHHHhh
Q psy5931         156 HQK-ESMSRKYLAKVDY  171 (173)
Q Consensus       156 ~~~-~~k~Rk~laRiLW  171 (173)
                      .+. +..+.-.++.++.
T Consensus        99 l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HSSSCCHHHHHHHHHHH
T ss_pred             hCCCCcHHHHHHHHHHH
Confidence            853 3455555555543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.84  E-value=0.00012  Score=56.30  Aligned_cols=142  Identities=10%  Similarity=0.035  Sum_probs=109.5

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCC-cH-HHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhh
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSV-PI-VDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMT   79 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i-~v-~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qk   79 (173)
                      ...+|.+-...|-++-|+..+.+....|.- ++ .+++   ...+.||..+      +++.++++.++..--   ..+..
T Consensus        40 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~---~~lg~~~~~~------~~~~~A~~~~~~a~~---~~~~~  107 (272)
T 3u4t_A           40 YNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADF---EYYGKILMKK------GQDSLAIQQYQAAVD---RDTTR  107 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHH---HHHHHHHHHT------TCHHHHHHHHHHHHH---HSTTC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHH---HHHHHHHHHc------ccHHHHHHHHHHHHh---cCccc
Confidence            467888999999999999999998886622 22 2233   4568888885      678899998887644   23456


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHH-HhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG-DYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG-~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      ++.+...|.++.++|++++|.+.|..++.++|+.+.+|...| ......   +           -..|+.+|-+++....
T Consensus       108 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~---~-----------~~~A~~~~~~a~~~~p  173 (272)
T 3u4t_A          108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK---E-----------YVKADSSFVKVLELKP  173 (272)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT---C-----------HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH---H-----------HHHHHHHHHHHHHhCc
Confidence            789999999999999999999999999999999999999999 444333   2           4679999999999854


Q ss_pred             C-chhhhhHHHH
Q psy5931         159 E-SMSRKYLAKV  169 (173)
Q Consensus       159 ~-~k~Rk~laRi  169 (173)
                      + ..+...++++
T Consensus       174 ~~~~~~~~~~~~  185 (272)
T 3u4t_A          174 NIYIGYLWRARA  185 (272)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             cchHHHHHHHHH
Confidence            3 2344444544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.84  E-value=8.2e-05  Score=57.28  Aligned_cols=109  Identities=10%  Similarity=0.054  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHH----------------HHHHHHHhCCchHHHHH
Q psy5931          39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYAL----------------KGMLLAQIGRSAEANKA  102 (173)
Q Consensus        39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~L----------------KG~fl~~Lg~~deA~~~  102 (173)
                      .+.+++.++++.      +++.++++.++..--   ..|..++.+..                .|..+.++|++++|...
T Consensus         6 ~~~~~g~~~~~~------g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~   76 (208)
T 3urz_A            6 EMLQKVSAAIEA------GQNGQAVSYFRQTIA---LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF   76 (208)
T ss_dssp             HHHHHHHHHHHT------TCHHHHHHHHHHHHH---HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHC------CCHHHHHHHHHHHHH---hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            344566677763      456666666554322   13455666666                99999999999999999


Q ss_pred             HHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHH
Q psy5931         103 FSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKV  169 (173)
Q Consensus       103 F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRi  169 (173)
                      |..|++++|+.+.+|..-|..+...-.             -..|+.+|-+++..+. +..+.-.++.+
T Consensus        77 ~~~al~~~p~~~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~P~~~~a~~~lg~~  131 (208)
T 3urz_A           77 YKELLQKAPNNVDCLEACAEMQVCRGQ-------------EKDALRMYEKILQLEADNLAANIFLGNY  131 (208)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            999999999999999999998877631             3568888888888743 23333344443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.84  E-value=5.4e-05  Score=54.11  Aligned_cols=96  Identities=14%  Similarity=0.015  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHH
Q psy5931          40 IRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWAL  119 (173)
Q Consensus        40 lrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~  119 (173)
                      ..+.+.++++.      +++.+++..++..--   ..+..++.+...|.++.++|++++|-..|..|+.++|+.+.+|..
T Consensus        20 ~~~~g~~~~~~------g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~   90 (121)
T 1hxi_A           20 PMEEGLSMLKL------ANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA   90 (121)
T ss_dssp             HHHHHHHHHHT------TCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHc------CCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            45667788874      567777777665433   245568999999999999999999999999999999999999999


Q ss_pred             HHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931         120 WGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       120 WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      -|..+.+.-             --..|+.+|-++++..
T Consensus        91 la~~~~~~g-------------~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           91 LAVSHTNEH-------------NANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHH-------------HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHcC-------------CHHHHHHHHHHHHHhC
Confidence            998877663             2356889999888763

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.83  E-value=8.4e-05  Score=52.82  Aligned_cols=105  Identities=10%  Similarity=0.075  Sum_probs=79.9

Q ss_pred             cHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931          32 PIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD  111 (173)
Q Consensus        32 ~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~  111 (173)
                      +..+....+...+.+++..      +++.++++..+..--   ..+..++.+...|..+..+|++++|.+.|..++.++|
T Consensus         8 ~~~~~~~~~~~~a~~~~~~------~~~~~A~~~~~~al~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   78 (166)
T 1a17_A            8 GALKRAEELKTQANDYFKA------KDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK   78 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            3445666778888898884      456666665554322   1233488999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931         112 VMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus       112 ~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      ..+.+|...|..+..+-.             -..|+.+|-++.....
T Consensus        79 ~~~~~~~~~a~~~~~~~~-------------~~~A~~~~~~a~~~~p  112 (166)
T 1a17_A           79 KYIKGYYRRAASNMALGK-------------FRAALRDYETVVKVKP  112 (166)
T ss_dssp             TCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHST
T ss_pred             ccHHHHHHHHHHHHHhcc-------------HHHHHHHHHHHHHhCC
Confidence            999999999988776531             3568888888887743

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.83  E-value=8.1e-05  Score=54.98  Aligned_cols=100  Identities=11%  Similarity=-0.000  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHH
Q psy5931          37 FEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKA  116 (173)
Q Consensus        37 F~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ka  116 (173)
                      ...+...+.++++.      +++.++++.++..--   ..+..++.+...|..+.++|++++|.+.|..|+.++|+.+.+
T Consensus        21 ~~~~~~~g~~~~~~------g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~   91 (148)
T 2vgx_A           21 LEQLYSLAFNQYQS------GXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF   91 (148)
T ss_dssp             HHHHHHHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred             HHHHHHHHHHHHHc------CChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            33455678888874      567788877765432   245568889999999999999999999999999999999999


Q ss_pred             HHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931         117 WALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus       117 W~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      |..-|..+..+-.             -..|+.+|-+|+....
T Consensus        92 ~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           92 PFHAAECLLQXGE-------------LAEAESGLFLAQELIA  120 (148)
T ss_dssp             HHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCc
Confidence            9999988776631             3569999999998753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.82  E-value=3.7e-05  Score=60.50  Aligned_cols=70  Identities=17%  Similarity=0.025  Sum_probs=62.2

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc-------chhhHHHH----HHHHHhHHhhcCCCCCCCCCchhhhHH
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM-------HDVMVKAW----ALWGDYMEAQFTNPSPPGSAPNMVLGV  144 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql-------~~~~~kaW----~~WG~~~d~~f~~~~~~~~~~~~~~~~  144 (173)
                      .+..+..|..+|..+.+||+++||...|..|+.+       +|+.+++|    ..-|.-+..+-             --.
T Consensus        53 ~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lg-------------r~e  119 (159)
T 2hr2_A           53 AGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLG-------------RGA  119 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTT-------------CHH
T ss_pred             ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCC-------------CHH
Confidence            4467889999999999999999999999999999       99999999    99999888774             246


Q ss_pred             HHHHHHHHHchhCC
Q psy5931         145 FAVTCFMHACRHQK  158 (173)
Q Consensus       145 ~Ai~CyLqA~~~~~  158 (173)
                      .|+.||-+|+.+..
T Consensus       120 EAl~~y~kAlel~p  133 (159)
T 2hr2_A          120 EAMPEFKKVVEMIE  133 (159)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC
Confidence            79999999998753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.82  E-value=5.4e-05  Score=52.79  Aligned_cols=96  Identities=13%  Similarity=0.121  Sum_probs=75.1

Q ss_pred             HHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHH
Q psy5931          40 IRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWAL  119 (173)
Q Consensus        40 lrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~  119 (173)
                      +...+.+++..      +++.++++..+..--.   .+..++.+...|..+.++|++++|...|..|+.++|+.+.+|..
T Consensus        12 ~~~~g~~~~~~------~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B           12 LKEQGNRLFVG------RKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             HHHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHh------CcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            45567777774      4566777666653221   23457899999999999999999999999999999999999999


Q ss_pred             HHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931         120 WGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       120 WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      -|..+..+-.             -..|+.+|-+|....
T Consensus        83 l~~~~~~~~~-------------~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           83 LGQCQLEMES-------------YDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHHHHHTTC-------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh-------------HHHHHHHHHHHHHHC
Confidence            9988777631             356888998888764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.80  E-value=0.00014  Score=48.25  Aligned_cols=109  Identities=11%  Similarity=0.096  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931          39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA  118 (173)
Q Consensus        39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~  118 (173)
                      .+...+.+++..      +++.++++.++..--.   .+...+.+...|..+.++|++++|...|..++.++|..+.+|.
T Consensus         6 ~~~~~~~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (118)
T 1elw_A            6 ELKEKGNKALSV------GNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS   76 (118)
T ss_dssp             HHHHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHc------ccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence            455667777764      4566777666654321   2344789999999999999999999999999999999999999


Q ss_pred             HHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHH
Q psy5931         119 LWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKV  169 (173)
Q Consensus       119 ~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRi  169 (173)
                      ..|..+..+-  +           -..|+.+|-++..... +...+..++++
T Consensus        77 ~~a~~~~~~~--~-----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           77 RKAAALEFLN--R-----------FEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHHHHHTT--C-----------HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHh--h-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            9998876653  1           3568899999988743 33445555544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.79  E-value=9.9e-05  Score=53.21  Aligned_cols=99  Identities=11%  Similarity=-0.019  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHH
Q psy5931          37 FEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKA  116 (173)
Q Consensus        37 F~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ka  116 (173)
                      ...+...+.++++.      +++.++++.++..--   ..+..++.+...|..+.++|++++|.+.|..|+.++|+.+.+
T Consensus        18 ~~~~~~~a~~~~~~------g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   88 (142)
T 2xcb_A           18 LEQLYALGFNQYQA------GKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF   88 (142)
T ss_dssp             HHHHHHHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHHHHHH------ccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence            34456678888874      567888887776543   245568899999999999999999999999999999999999


Q ss_pred             HHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931         117 WALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       117 W~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      |..-|..+..+-.             -..|+.+|-+|+...
T Consensus        89 ~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           89 PFHAAECHLQLGD-------------LDGAESGFYSARALA  116 (142)
T ss_dssp             HHHHHHHHHHTTC-------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-------------HHHHHHHHHHHHHhC
Confidence            9998888776631             356888999888764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.78  E-value=0.00039  Score=54.70  Aligned_cols=149  Identities=11%  Similarity=0.025  Sum_probs=101.5

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcH-HHHHHH------HHHHHHHHhhhhccCChhHHHHHHHHhhhccccC-
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPI-VDCFEK------IRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKY-   73 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v-~daF~K------lrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~-   73 (173)
                      ..+|.+..+.|-++-++..+.+...+ |+.+. ...+.+      ....+.+++..      +++.++++.++..--.. 
T Consensus       192 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~  265 (359)
T 3ieg_A          192 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD------GRYTDATSKYESVMKTEP  265 (359)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCC
Confidence            45666666777777777777765542 32221 112222      12346666663      45666766665432211 


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHH
Q psy5931          74 LTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHA  153 (173)
Q Consensus        74 F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA  153 (173)
                      -.+....+.+...|.++.++|++++|.+.|..++.++|+.+.+|...|..+...-  +           -..|+.+|-+|
T Consensus       266 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~-----------~~~A~~~~~~a  332 (359)
T 3ieg_A          266 SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEE--M-----------YDEAIQDYEAA  332 (359)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--C-----------HHHHHHHHHHH
Confidence            1334455778889999999999999999999999999999999999999887753  1           46799999999


Q ss_pred             chhCCC-chhhhhHHHHh
Q psy5931         154 CRHQKE-SMSRKYLAKVD  170 (173)
Q Consensus       154 ~~~~~~-~k~Rk~laRiL  170 (173)
                      +....+ ..++..|.++.
T Consensus       333 ~~~~p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          333 QEHNENDQQIREGLEKAQ  350 (359)
T ss_dssp             HTTCTTCHHHHHHHHHHH
T ss_pred             HhcCCCChHHHHHHHHHH
Confidence            988543 45566666653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.76  E-value=0.00032  Score=52.70  Aligned_cols=111  Identities=13%  Similarity=0.182  Sum_probs=61.9

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|.+..+.|-++.++..+.+...+ |.  -.+++   ...+.+|..+      +++.++++.++..--.   .+...+
T Consensus        61 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~---~~la~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~  126 (243)
T 2q7f_A           61 INFANLLSSVNELERALAFYDKALELDSS--AATAY---YGAGNVYVVK------EMYKEAKDMFEKALRA---GMENGD  126 (243)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHH---HHHHHHHHHT------TCHHHHHHHHHHHHHH---TCCSHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCc--chHHH---HHHHHHHHHh------ccHHHHHHHHHHHHHh---CCCCHH
Confidence            34566666667777777766665443 21  11222   2235555553      3344555444433211   122345


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      .+...|.++.++|++++|.+.|..+++++|..+.+|...|..+...
T Consensus       127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  172 (243)
T 2q7f_A          127 LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE  172 (243)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence            6666677777777777777777777777776666666666665544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.76  E-value=0.0003  Score=54.42  Aligned_cols=145  Identities=14%  Similarity=0.150  Sum_probs=100.8

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccC-----ChhHHHHHHHHhhhccccCCCc
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALD-----GKNQLQEGLEVIEHTNLKYLTK   76 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~-----~~~el~~gL~vi~~tnl~~F~~   76 (173)
                      ..+|.+..+.|-++-++..+.+...+ |+-  .++.   ...+.+|.++....     ..+++.++++.++..--   ..
T Consensus        43 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~---~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~  114 (217)
T 2pl2_A           43 YWLARTQLKLGLVNPALENGKTLVARTPRY--LGGY---MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VN  114 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHH---HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hC
Confidence            46788888999999999999997664 322  2232   23355666530000     01456677766655432   14


Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      |..++.+...|.++..+|++++|-..|..|+.++ ..+.+|..-|..+..+-.             -..|+.+|-+|+..
T Consensus       115 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~al~~  180 (217)
T 2pl2_A          115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGR-------------LDEALAQYAKALEQ  180 (217)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHh
Confidence            5678899999999999999999999999999999 889999999988776631             35588888888877


Q ss_pred             CC-CchhhhhHHHH
Q psy5931         157 QK-ESMSRKYLAKV  169 (173)
Q Consensus       157 ~~-~~k~Rk~laRi  169 (173)
                      .. +..++..++.+
T Consensus       181 ~P~~~~~~~~la~~  194 (217)
T 2pl2_A          181 APKDLDLRVRYASA  194 (217)
T ss_dssp             STTCHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHH
Confidence            42 33344444444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.76  E-value=0.00027  Score=48.65  Aligned_cols=100  Identities=9%  Similarity=-0.093  Sum_probs=77.6

Q ss_pred             HHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh---HHHH
Q psy5931          41 RQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM---VKAW  117 (173)
Q Consensus        41 rEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~---~kaW  117 (173)
                      ...+.++++.      +++.++++.++..--.+-..+..++.+...|..+.+.|++++|...|..++..+|+.   +.+|
T Consensus         6 ~~~a~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (129)
T 2xev_A            6 YNVAFDALKN------GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL   79 (129)
T ss_dssp             HHHHHHHHHT------TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred             HHHHHHHHHh------CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence            4567788874      567788777776544444556667899999999999999999999999999999998   8888


Q ss_pred             HHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC
Q psy5931         118 ALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE  159 (173)
Q Consensus       118 ~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~  159 (173)
                      ..-|.....+-  +           -..|+..|-+++..+.+
T Consensus        80 ~~la~~~~~~g--~-----------~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           80 LKLGLSQYGEG--K-----------NTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHHHHHTT--C-----------HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHcC--C-----------HHHHHHHHHHHHHHCCC
Confidence            88888776553  1           35688888888876543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.74  E-value=0.00021  Score=47.91  Aligned_cols=130  Identities=14%  Similarity=0.120  Sum_probs=93.7

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ...+|.+....|-++-++..+.+...... .-.+++   ...+.++...      +++.++++.++..--.   .+....
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~---~~~a~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~   70 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAW---YNLGNAYYKQ------GDYDEAIEYYQKALEL---DPRSAE   70 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH---HHHHHHHHHH------TCHHHHHHHHHHHHHH---CTTCHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHH---HHHHHHHHHh------cCHHHHHHHHHHHHHH---CCCchH
Confidence            35678888888999999999988765421 112222   3357777764      4566666666554221   233467


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .+...|.++...|++++|.+.|..++...|..+.+|...|..+...-  +           -..|+.+|-++....
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~-----------~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--D-----------YDEAIEYYQKALELD  133 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--C-----------HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc--c-----------HHHHHHHHHHHHccC
Confidence            78889999999999999999999999999999999998888765432  1           356888888887764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.73  E-value=0.00014  Score=54.84  Aligned_cols=116  Identities=11%  Similarity=-0.048  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccc------cCC-------CchhhHHHHHHHHHHHHHhCCchHHHHH
Q psy5931          36 CFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNL------KYL-------TKEMTAEFYALKGMLLAQIGRSAEANKA  102 (173)
Q Consensus        36 aF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl------~~F-------~~~qkaE~~~LKG~fl~~Lg~~deA~~~  102 (173)
                      .-..+++.+.+++..      +++.++++..+..--      ++.       ...-....+...|..+.++|++++|...
T Consensus        37 ~~~~~~~~g~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  110 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKK------NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH  110 (198)
T ss_dssp             HHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            455667778888774      456666655543311      110       0112358999999999999999999999


Q ss_pred             HHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC-CCchhhhhHHHHh
Q psy5931         103 FSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ-KESMSRKYLAKVD  170 (173)
Q Consensus       103 F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~-~~~k~Rk~laRiL  170 (173)
                      |..|++++|..+++|...|..+..+-.             -..|+.+|-+|+... ++..++..++++.
T Consensus       111 ~~~al~~~p~~~~~~~~lg~~~~~~~~-------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A          111 ASKVLKIDKNNVKALYKLGVANMYFGF-------------LEEAKENLYKAASLNPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHccc-------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            999999999999999999998876631             356899999998875 3455666666654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.72  E-value=0.0001  Score=56.55  Aligned_cols=108  Identities=12%  Similarity=0.066  Sum_probs=67.9

Q ss_pred             hCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHH
Q psy5931          11 KHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLL   90 (173)
Q Consensus        11 kh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl   90 (173)
                      ..|-++.++..+.++.......-.+-..-....+.||+..      +++.++++.++..--.   .+..++.+...|.++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~   87 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL------GLRALARNDFSQALAI---RPDMPEVFNYLGIYL   87 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHc---CCCcHHHHHHHHHHH
Confidence            3455666777777766542222222333344557777764      3455555554443221   233566777888888


Q ss_pred             HHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          91 AQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        91 ~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      ..+|++++|.+.|..|+.++|+.+.+|...|..+..+
T Consensus        88 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  124 (275)
T 1xnf_A           88 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG  124 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence            8888888888888888888888888888777776554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.72  E-value=0.00013  Score=63.82  Aligned_cols=123  Identities=23%  Similarity=0.232  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhccC---------------ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCc-
Q psy5931          33 IVDCFEKIRQQVKCYLQMAALD---------------GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRS-   96 (173)
Q Consensus        33 v~daF~KlrEq~kc~l~~~~~~---------------~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~-   96 (173)
                      ..+.|.++.+.+...+......               -.+++.+++..++...-   .++..++.+..+|..+..+|++ 
T Consensus        43 ~~~~~~~l~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~---~~~~~a~~~~~lg~~~~~~g~~~  119 (474)
T 4abn_A           43 AKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLG---SAQVEAQALMLKGKALNVTPDYS  119 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHT---TCCCCHHHHHHHHHHHTSSSSCC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhc---cCchhHHHHHHHHHHHHhccccH
Confidence            4566777777766544421100               11236667777765332   3567899999999999999999 


Q ss_pred             hHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhHHHHhh
Q psy5931          97 AEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDY  171 (173)
Q Consensus        97 deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~laRiLW  171 (173)
                      ++|.+.|..|+.++|..+.+|..-|..+..+-  +           -..|+.||-+|+....+..+...++.++.
T Consensus       120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--~-----------~~~A~~~~~~al~~~p~~~~~~~lg~~~~  181 (474)
T 4abn_A          120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG--D-----------VTSAHTCFSGALTHCKNKVSLQNLSMVLR  181 (474)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--C-----------HHHHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--C-----------HHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999887763  1           46799999999998766666666666654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.71  E-value=0.00033  Score=47.07  Aligned_cols=112  Identities=13%  Similarity=0.164  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHH
Q psy5931          37 FEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKA  116 (173)
Q Consensus        37 F~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ka  116 (173)
                      ..-....+.+++.+      +++.++++..+..--.   .+..++.+...|.++..+|++++|.+.|..++.++|+.+.+
T Consensus        12 ~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   82 (131)
T 2vyi_A           12 AERLKTEGNEQMKV------ENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA   82 (131)
T ss_dssp             HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHHc------cCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHH
Confidence            34455667777764      4566666665543221   23347889999999999999999999999999999999999


Q ss_pred             HHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHHh
Q psy5931         117 WALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKVD  170 (173)
Q Consensus       117 W~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRiL  170 (173)
                      |...|..+..+-  +           -..|+.+|-++..... +..+...++++.
T Consensus        83 ~~~~~~~~~~~~--~-----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  124 (131)
T 2vyi_A           83 YGRMGLALSSLN--K-----------HVEAVAYYKKALELDPDNETYKSNLKIAE  124 (131)
T ss_dssp             HHHHHHHHHHTT--C-----------HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC--C-----------HHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            999998876653  1           3568999999988753 344455555543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.69  E-value=0.00068  Score=50.88  Aligned_cols=130  Identities=16%  Similarity=0.025  Sum_probs=97.5

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ..+|.+..+.|-++-++..+.+...+..- -.++   ....+.||+.+      +++.++++.++..--.   .+...+.
T Consensus        95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~---~~~~a~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~~  161 (243)
T 2q7f_A           95 YGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDL---FYMLGTVLVKL------EQPKLALPYLQRAVEL---NENDTEA  161 (243)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHH---HHHHHHHHHHT------SCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHH---HHHHHHHHHHh------ccHHHHHHHHHHHHHh---CCccHHH
Confidence            56788889999999999999987654211 1222   34457788874      4566666666554321   2345778


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      +...|.++.+.|++++|.+.|..+++.+|..+.+|..-|..+...-.-             ..|+.+|-++.....
T Consensus       162 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-------------~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENR-------------EKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT-------------THHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCH-------------HHHHHHHHHHHccCc
Confidence            999999999999999999999999999999999999999887765322             458888888887753

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.68  E-value=0.00061  Score=53.21  Aligned_cols=128  Identities=10%  Similarity=-0.084  Sum_probs=89.1

Q ss_pred             hHHHHHHHhCC-ChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHH-LTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~-l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|.+....| -++.++..+.+...+.. ...++   ....+.||..+      +++.++++.++..--.   .+...+
T Consensus        94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~---~~~l~~~~~~~------~~~~~A~~~~~~a~~~---~~~~~~  160 (330)
T 3hym_B           94 FAVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPA---WIAYGHSFAVE------SEHDQAMAAYFTAAQL---MKGCHL  160 (330)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHH---HHHHHHHHHHH------TCHHHHHHHHHHHHHH---TTTCSH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHH---HHHHHHHHHHc------cCHHHHHHHHHHHHHh---ccccHH
Confidence            45677888888 88888888888766421 11223   33557777774      4566666666544221   123456


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      .+...|..+...|++++|.+.|..++.++|..+.+|..-|..+...-.             -..|+.+|-+++..
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~a~~~  222 (330)
T 3hym_B          161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE-------------WKTAEKWFLDALEK  222 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc-------------HHHHHHHHHHHHHH
Confidence            677799999999999999999999999999999999888887765531             24466667666654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.00018  Score=54.25  Aligned_cols=75  Identities=12%  Similarity=0.088  Sum_probs=54.6

Q ss_pred             HHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHh
Q psy5931          44 VKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDY  123 (173)
Q Consensus        44 ~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~  123 (173)
                      ..++..+      +++.++++.++..--   ..+..++.+...|.++...|++++|.+.|..++.++|..+.+|...|..
T Consensus       112 ~~~~~~~------~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  182 (258)
T 3uq3_A          112 ADILTKL------RNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA  182 (258)
T ss_dssp             HHHHHHH------HHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHH------hHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            4566654      456666666665433   3466778888888888888888888888888888888888888888877


Q ss_pred             HHhh
Q psy5931         124 MEAQ  127 (173)
Q Consensus       124 ~d~~  127 (173)
                      +...
T Consensus       183 ~~~~  186 (258)
T 3uq3_A          183 LAKL  186 (258)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            6654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.66  E-value=0.00033  Score=49.81  Aligned_cols=128  Identities=16%  Similarity=0.083  Sum_probs=96.1

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|.+..+.|-++-++..+.+...+ |..  .+++   ...+.++...      +++.++++.++..--.   .+..++
T Consensus        46 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~---~~~a~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~  111 (186)
T 3as5_A           46 LHLGIAYVKTGAVDRGTELLERSLADAPDN--VKVA---TVLGLTYVQV------QKYDLAVPLLIKVAEA---NPINFN  111 (186)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH---HHHHHHHHHH------TCHHHHHHHHHHHHHH---CTTCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHH---HHHHHHHHHh------cCHHHHHHHHHHHHhc---CcHhHH
Confidence            45778888999999999999987664 322  2332   3456777764      4566666666543221   234578


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .+...|..+.++|++++|.+.|..++...|..+.+|...|..+...-  +           -..|+.+|-++....
T Consensus       112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--~-----------~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG--R-----------HEEALPHFKKANELD  174 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC--C-----------HHHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999999999999887653  1           356888888887764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.00011  Score=49.23  Aligned_cols=69  Identities=12%  Similarity=-0.037  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931          79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus        79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      .++.+...|..+.+.|++++|-+.|..|+.++|+.+.+|..-|..+..+-  +           -..|+.+|-+|+....
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~-----------~~~A~~~~~~al~~~p   69 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLG--E-----------YTQAIQMCQQGLRYTS   69 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHTSCS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--C-----------HHHHHHHHHHHHHhCC
Confidence            46778888999999999999999999999999988888888887766553  1           3568888888888755


Q ss_pred             Cc
Q psy5931         159 ES  160 (173)
Q Consensus       159 ~~  160 (173)
                      +.
T Consensus        70 ~~   71 (111)
T 2l6j_A           70 TA   71 (111)
T ss_dssp             ST
T ss_pred             Cc
Confidence            43

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.64  E-value=0.00068  Score=53.28  Aligned_cols=133  Identities=11%  Similarity=0.049  Sum_probs=97.2

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCC-C-cHHHHHHHH---------HHHHHHHhhhhccCChhHHHHHHHHhhhccc
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPS-V-PIVDCFEKI---------RQQVKCYLQMAALDGKNQLQEGLEVIEHTNL   71 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~-i-~v~daF~Kl---------rEq~kc~l~~~~~~~~~el~~gL~vi~~tnl   71 (173)
                      ..+|.+..+.|-++-++..+.+...+.. . .-.++...+         ...+.++...      +++.++++.++..--
T Consensus        75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~  148 (359)
T 3ieg_A           75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG------ADYTAAITFLDKILE  148 (359)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHHHH
Confidence            4678888888999999999999877521 0 233344333         3446777764      567777777765432


Q ss_pred             cCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHH
Q psy5931          72 KYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFM  151 (173)
Q Consensus        72 ~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyL  151 (173)
                      .   .+...+.+...|.++.++|++++|...|..++.++|..+.+|..-|..+...-.             -..|+..|-
T Consensus       149 ~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-------------~~~A~~~~~  212 (359)
T 3ieg_A          149 V---CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD-------------HELSLSEVR  212 (359)
T ss_dssp             H---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC-------------HHHHHHHHH
T ss_pred             h---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHH
Confidence            1   234578999999999999999999999999999999999999999988776531             244666666


Q ss_pred             HHchhC
Q psy5931         152 HACRHQ  157 (173)
Q Consensus       152 qA~~~~  157 (173)
                      ++....
T Consensus       213 ~a~~~~  218 (359)
T 3ieg_A          213 ECLKLD  218 (359)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            666653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.64  E-value=0.00089  Score=44.89  Aligned_cols=111  Identities=10%  Similarity=0.036  Sum_probs=83.8

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ...|.+....|-++-++..+.+...+ |.-  .++   ....+.||...      +++.++++.++..--.   .+...+
T Consensus        16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~---~~~~a~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~   81 (131)
T 2vyi_A           16 KTEGNEQMKVENFEAAVHFYGKAIELNPAN--AVY---FCNRAAAYSKL------GNYAGAVQDCERAICI---DPAYSK   81 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH---HHHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHH---HHHHHHHHHHh------hchHHHHHHHHHHHhc---CccCHH
Confidence            46788888999999999999987653 322  222   33457788774      4566666666554321   233478


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      .+...|.++.++|++++|.+.|..++.++|+.+.+|..-|..+..+
T Consensus        82 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           82 AYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999998888776654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.64  E-value=0.001  Score=49.32  Aligned_cols=126  Identities=11%  Similarity=0.051  Sum_probs=84.7

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ...+|.+..+.|-++-++..+.++..+.. .  ..+..+.-.+.. .+..... ....++.+++.          .|...
T Consensus        43 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--~~~~~~~~~~~~-~~~~~~~~a~~~~~~al~~----------~P~~~  108 (176)
T 2r5s_A           43 KLAKADCLLETKQFELAQELLATIPLEYQ-D--NSYKSLIAKLEL-HQQAAESPELKRLEQELAA----------NPDNF  108 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C--HHHHHHHHHHHH-HHHHTSCHHHHHHHHHHHH----------STTCH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhhccC-C--hHHHHHHHHHHH-HhhcccchHHHHHHHHHHh----------CCCCH
Confidence            35678888899999999999998765432 1  122222222211 1111000 01224444432          34557


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhh--HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHc
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM--VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHAC  154 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~--~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~  154 (173)
                      +.+...|.++...|++++|...|..++..+|+.  +.+|...|..+..+...+.             |+.+|-++.
T Consensus       109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~-------------A~~~y~~al  171 (176)
T 2r5s_A          109 ELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA-------------IASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH-------------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc-------------HHHHHHHHH
Confidence            899999999999999999999999999999976  6699999998888764443             777776554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.63  E-value=0.00068  Score=52.92  Aligned_cols=135  Identities=10%  Similarity=-0.057  Sum_probs=100.8

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcC-CCCCcH-HHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYT-IPSVPI-VDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~-lp~i~v-~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ...|....+.|-++-++..+.++.. -|.-+. .++..   ..+.||+++      +++.++++.++..--.+-..+..+
T Consensus        19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~---~lg~~~~~~------~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQF---YLARAYYQN------KEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHH---HHHHHHHHT------TCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHH---HHHHHHHHh------CcHHHHHHHHHHHHHHCCCCchhH
Confidence            4568888899999999999999876 454432 34443   458899985      578888888877655555556778


Q ss_pred             HHHHHHHHHHHH--------hCCchHHHHHHHHHHccchhhHHHHHH-----------------HHHhHHhhcCCCCCCC
Q psy5931          81 EFYALKGMLLAQ--------IGRSAEANKAFSAAVQMHDVMVKAWAL-----------------WGDYMEAQFTNPSPPG  135 (173)
Q Consensus        81 E~~~LKG~fl~~--------Lg~~deA~~~F~~Avql~~~~~kaW~~-----------------WG~~~d~~f~~~~~~~  135 (173)
                      +.+...|..+.+        +|++++|...|..++..+|+.+.++..                 -|.....+-       
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g-------  162 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRE-------  162 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------
Confidence            899999999999        999999999999999999988777643                 355444331       


Q ss_pred             CCchhhhHHHHHHHHHHHchhCCC
Q psy5931         136 SAPNMVLGVFAVTCFMHACRHQKE  159 (173)
Q Consensus       136 ~~~~~~~~~~Ai~CyLqA~~~~~~  159 (173)
                            --..|+.+|-+++..+.+
T Consensus       163 ------~~~~A~~~~~~~l~~~p~  180 (261)
T 3qky_A          163 ------LYEAAAVTYEAVFDAYPD  180 (261)
T ss_dssp             ------CHHHHHHHHHHHHHHCTT
T ss_pred             ------CHHHHHHHHHHHHHHCCC
Confidence                  135688888888876543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.63  E-value=0.00089  Score=49.93  Aligned_cols=127  Identities=13%  Similarity=-0.019  Sum_probs=92.6

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ...|.+..+.|-++-++..+.+..  +. . .+   -....+.||+.+      +++.++++..+..--.   .+..++.
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~--~~-~-~~---~~~~lg~~~~~~------g~~~~A~~~~~~al~~---~~~~~~~   73 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQ--DP-H-SR---ICFNIGCMYTIL------KNMTEAEKAFTRSINR---DKHLAVA   73 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSS--SC-C-HH---HHHHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHc--CC-C-hH---HHHHHHHHHHHc------CCHHHHHHHHHHHHHh---CccchHH
Confidence            456888889999999999999973  22 1 12   334567788875      4566666666543221   2455789


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchhh----------------HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHH
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVM----------------VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFA  146 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~----------------~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~A  146 (173)
                      +...|..+.++|++++|.+.|..|+++.|..                +.+|...|..+..+-.             -..|
T Consensus        74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------~~~A  140 (213)
T 1hh8_A           74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-------------WKKA  140 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-------------HHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-------------HHHH
Confidence            9999999999999999999999999976654                4899988888766531             3457


Q ss_pred             HHHHHHHchhCC
Q psy5931         147 VTCFMHACRHQK  158 (173)
Q Consensus       147 i~CyLqA~~~~~  158 (173)
                      +.+|-+|.....
T Consensus       141 ~~~~~~al~~~p  152 (213)
T 1hh8_A          141 EEQLALATSMKS  152 (213)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCc
Confidence            777777777643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.00057  Score=47.44  Aligned_cols=111  Identities=10%  Similarity=0.000  Sum_probs=83.0

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ....|....+.|-++-++..+.+...+ |+-  .+++   ...+.||+.+      +++.++++.++..--   ..+..+
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~---~~~a~~~~~~------~~~~~A~~~~~~al~---~~p~~~   72 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--ARGY---SNRAAALAKL------MSFPEAIADCNKAIE---KDPNFV   72 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH---HHHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHH---HHHHHHHHHh------cCHHHHHHHHHHHHH---hCCCcH
Confidence            356788889999999999999987653 332  2333   3458888885      456666666655432   134557


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccc------hhhHHHHHHHHHhHHh
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMH------DVMVKAWALWGDYMEA  126 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~------~~~~kaW~~WG~~~d~  126 (173)
                      +.+...|..+..+|++++|...|..++.++      |+.+.+|...+.....
T Consensus        73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           73 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999      7778888776665443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.62  E-value=0.00072  Score=55.83  Aligned_cols=148  Identities=12%  Similarity=0.033  Sum_probs=102.8

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC-CCCc-HHHHH------HHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccC
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSVP-IVDCF------EKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKY   73 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~-v~daF------~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~   73 (173)
                      .+.+|.+..++|-++-++..+.++..+ |+-+ +....      .+..+.+.++...      +++.++++.++..--..
T Consensus       214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~A~~~~~~~l~~~  287 (450)
T 2y4t_A          214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD------GRYTDATSKYESVMKTE  287 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcC
Confidence            356788888999999999999887653 3222 11111      1224447777764      45666666665532111


Q ss_pred             -CCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHH
Q psy5931          74 -LTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMH  152 (173)
Q Consensus        74 -F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLq  152 (173)
                       -.++...+.+...|.++.++|++++|...|..++.++|+.+.+|..-|..+...-  +           -..|+.+|-+
T Consensus       288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~--~-----------~~~A~~~~~~  354 (450)
T 2y4t_A          288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE--M-----------YDEAIQDYET  354 (450)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc--C-----------HHHHHHHHHH
Confidence             1344457899999999999999999999999999999999999999999987653  1           3568888888


Q ss_pred             HchhCCC-chhhhhHHH
Q psy5931         153 ACRHQKE-SMSRKYLAK  168 (173)
Q Consensus       153 A~~~~~~-~k~Rk~laR  168 (173)
                      |.....+ ..++..+++
T Consensus       355 al~~~p~~~~~~~~l~~  371 (450)
T 2y4t_A          355 AQEHNENDQQIREGLEK  371 (450)
T ss_dssp             HHTTSSSCHHHHHHHHH
T ss_pred             HHHhCcchHHHHHHHHH
Confidence            8876432 334444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.61  E-value=0.001  Score=50.58  Aligned_cols=113  Identities=6%  Similarity=0.063  Sum_probs=70.8

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|.+..+.|-++-++..+.+...+ |..  .+++   ...+.+|+.+      +++.++++.++..-- .-..+..++
T Consensus        75 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~---~~la~~~~~~------g~~~~A~~~~~~~~~-~~~~~~~~~  142 (252)
T 2ho1_A           75 AALAVVFQTEMEPKLADEEYRKALASDSRN--ARVL---NNYGGFLYEQ------KRYEEAYQRLLEASQ-DTLYPERSR  142 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH---HHHHHHHHHT------TCHHHHHHHHHHHTT-CTTCTTHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHH---HHHHHHHHHH------hHHHHHHHHHHHHHh-CccCcccHH
Confidence            34566666777777777777665443 221  2222   2335566653      456666666555422 112355677


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      .+...|..+.+.|++++|.+.|..++.+.|..+.+|...|..+...
T Consensus       143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  188 (252)
T 2ho1_A          143 VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE  188 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence            7777888888888888888888888888877777777777766554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.61  E-value=0.00087  Score=48.79  Aligned_cols=116  Identities=15%  Similarity=0.070  Sum_probs=79.9

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC---------CCCcH----H-HHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhh
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI---------PSVPI----V-DCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEH   68 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l---------p~i~v----~-daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~   68 (173)
                      ...|....+.|-++-++...++...+         |+-+-    . .-..=....+.||+.+      +++.++++.++.
T Consensus        15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~------~~~~~A~~~~~~   88 (162)
T 3rkv_A           15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI------GDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHH
Confidence            45677888899999999988886554         22221    1 1111223457788876      456666665554


Q ss_pred             ccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH-HHHHHHHHhHHhh
Q psy5931          69 TNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV-KAWALWGDYMEAQ  127 (173)
Q Consensus        69 tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~-kaW~~WG~~~d~~  127 (173)
                      .--   ..+..++.+..+|..+..+|++++|...|..|+.++|+.+ ..+..-+.....+
T Consensus        89 al~---~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           89 VLK---REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHh---cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            322   1456688999999999999999999999999999999988 5555555444433

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.60  E-value=0.001  Score=54.32  Aligned_cols=151  Identities=11%  Similarity=-0.022  Sum_probs=101.8

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      +...|......|-++-++..+.+...+..-.......-....+.||+.+..... ..-+.+++++....+    .++..+
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~  126 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN----DRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----CHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc----CchHHH
Confidence            346788889999999999999987665222222112223455778877532111 111556666665553    368889


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHcc------chhhHHHHHHHHHhHHhhcC----CCCCCCCCchhhhHHHHHHHH
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQM------HDVMVKAWALWGDYMEAQFT----NPSPPGSAPNMVLGVFAVTCF  150 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql------~~~~~kaW~~WG~~~d~~f~----~~~~~~~~~~~~~~~~Ai~Cy  150 (173)
                      ..+...|.++..+|++++|...|..|+.+      .+..+.+|...|..+..+-.    ..+..........-..|+.+|
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999      67778899999988877654    000001112334456677777


Q ss_pred             HHHchh
Q psy5931         151 MHACRH  156 (173)
Q Consensus       151 LqA~~~  156 (173)
                      -+|...
T Consensus       207 ~~al~~  212 (411)
T 4a1s_A          207 QENLKL  212 (411)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.60  E-value=0.001  Score=51.91  Aligned_cols=145  Identities=11%  Similarity=-0.010  Sum_probs=102.5

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhcc------ccCCCc
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTN------LKYLTK   76 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tn------l~~F~~   76 (173)
                      ..+|.+..+.|-++-++..+.+...+..-. .++   ....+.+|...      +++.++++.++..-      -+....
T Consensus       163 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~---~~~l~~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~  232 (330)
T 3hym_B          163 LYIGLEYGLTNNSKLAERFFSQALSIAPED-PFV---MHEVGVVAFQN------GEWKTAEKWFLDALEKIKAIGNEVTV  232 (330)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHH---HHHHHHHHHHT------TCHHHHHHHHHHHHHHHTTTSCSCTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-hHH---HHHHHHHHHHc------ccHHHHHHHHHHHHHHhhhccccccc
Confidence            346777778888888888888876652111 122   33456677764      23444444333221      122233


Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +..++.+...|.++.++|++++|...|..+++++|+.+.+|...|..+..+-.             -..|+.+|-+|...
T Consensus       233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~al~~  299 (330)
T 3hym_B          233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN-------------FENAVDYFHTALGL  299 (330)
T ss_dssp             TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-------------HHHHHHHHHTTTTT
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc-------------HHHHHHHHHHHHcc
Confidence            56678999999999999999999999999999999999999999998877631             35689999999887


Q ss_pred             CC-CchhhhhHHHHh
Q psy5931         157 QK-ESMSRKYLAKVD  170 (173)
Q Consensus       157 ~~-~~k~Rk~laRiL  170 (173)
                      .. +..++..+++++
T Consensus       300 ~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          300 RRDDTFSVTMLGHCI  314 (330)
T ss_dssp             CSCCHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHH
Confidence            53 455667777665

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.60  E-value=0.00084  Score=49.45  Aligned_cols=108  Identities=16%  Similarity=0.020  Sum_probs=47.7

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      .+|.+....|-++-++..+.+...+ |.-  .+++   ...+.||...      +++.++++.++..--.   .+..++.
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~---~~l~~~~~~~------~~~~~A~~~~~~a~~~---~~~~~~~   78 (225)
T 2vq2_A           13 QLAMEYMRGQDYRQATASIEDALKSDPKN--ELAW---LVRAEIYQYL------KVNDKAQESFRQALSI---KPDSAEI   78 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH---HHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCccc--hHHH---HHHHHHHHHc------CChHHHHHHHHHHHHh---CCCChHH
Confidence            4455555666666666666554332 211  1121   1224444442      2333333333322110   1223444


Q ss_pred             HHHHHHHHHHh-CCchHHHHHHHHHHc--cchhhHHHHHHHHHhHH
Q psy5931          83 YALKGMLLAQI-GRSAEANKAFSAAVQ--MHDVMVKAWALWGDYME  125 (173)
Q Consensus        83 ~~LKG~fl~~L-g~~deA~~~F~~Avq--l~~~~~kaW~~WG~~~d  125 (173)
                      +...|.++..+ |++++|...|..+++  .+|..+.+|...|..+.
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  124 (225)
T 2vq2_A           79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA  124 (225)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH
Confidence            55555555555 555555555555555  33444445554444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.59  E-value=0.00033  Score=61.18  Aligned_cols=150  Identities=14%  Similarity=0.128  Sum_probs=103.9

Q ss_pred             hHHHHHHHhCCCh-HHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLT-SVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~-~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ...|.+....|-+ +-|+..+.+...+. -.-.+++   ...+.||+++      +++.++++.++..--.  .|.  ++
T Consensus       106 ~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~---~~lg~~~~~~------g~~~~A~~~~~~al~~--~p~--~~  171 (474)
T 4abn_A          106 MLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAW---NQLGEVYWKK------GDVTSAHTCFSGALTH--CKN--KV  171 (474)
T ss_dssp             HHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHH---HHHHHHHHHH------TCHHHHHHHHHHHHTT--CCC--HH
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHH---HHHHHHHHHc------CCHHHHHHHHHHHHhh--CCC--HH
Confidence            3566777777777 88888888865531 1122343   3457788875      4566777666554321  233  58


Q ss_pred             HHHHHHHHHHHh---------CCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHH
Q psy5931          82 FYALKGMLLAQI---------GRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMH  152 (173)
Q Consensus        82 ~~~LKG~fl~~L---------g~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLq  152 (173)
                      .+...|.++..+         |++++|.+.|..|+.++|+.+.+|..-|..+..+|....     .+..--..|+.+|-+
T Consensus       172 ~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~-----~~~g~~~~A~~~~~~  246 (474)
T 4abn_A          172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTG-----QNPKISQQALSAYAQ  246 (474)
T ss_dssp             HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTT-----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc-----cccchHHHHHHHHHH
Confidence            999999999999         999999999999999999999999999999887743332     122345678888888


Q ss_pred             HchhCC----CchhhhhHHHHhh
Q psy5931         153 ACRHQK----ESMSRKYLAKVDY  171 (173)
Q Consensus       153 A~~~~~----~~k~Rk~laRiLW  171 (173)
                      |+....    +..+.-.++.+++
T Consensus       247 al~~~p~~~~~~~~~~~lg~~~~  269 (474)
T 4abn_A          247 AEKVDRKASSNPDLHLNRATLHK  269 (474)
T ss_dssp             HHHHCGGGGGCHHHHHHHHHHHH
T ss_pred             HHHhCCCcccCHHHHHHHHHHHH
Confidence            887643    3444445555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.59  E-value=0.00025  Score=45.84  Aligned_cols=82  Identities=17%  Similarity=0.143  Sum_probs=64.8

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR  155 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~  155 (173)
                      ++..++.+...|..+.+.|++++|.+.|..|+.++|..+.+|...|..+...-  +           -..|+.+|-+++.
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--~-----------~~~A~~~~~~a~~   71 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--D-----------YDEAIEYYQKALE   71 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--h-----------HHHHHHHHHHHHh
Confidence            45678889999999999999999999999999999999999999998876652  1           3568889988888


Q ss_pred             hCC-CchhhhhHHHHh
Q psy5931         156 HQK-ESMSRKYLAKVD  170 (173)
Q Consensus       156 ~~~-~~k~Rk~laRiL  170 (173)
                      ... +..+...+++++
T Consensus        72 ~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           72 LDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HCTTCHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHH
Confidence            742 345555555553

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.58  E-value=0.00099  Score=47.11  Aligned_cols=130  Identities=10%  Similarity=-0.055  Sum_probs=90.9

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ....|.+..+.|-++-++..+.+...+ |.-  .++   ....+.|++.+      +++.++++.++..--.   .+..+
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~---~~~~a~~~~~~------~~~~~A~~~~~~a~~~---~~~~~   81 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIY---YGNRSLAYLRT------ECYGYALGDATRAIEL---DKKYI   81 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHH---HHHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHH---HHHHHHHHHHc------CCHHHHHHHHHHHHHh---CcccH
Confidence            356788889999999999999986553 221  222   33457788874      4566666666543221   23457


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +.+...|.++.++|++++|.+.|..++.++|..+.+|..++......-           ..--..|+.+|-++...
T Consensus        82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~-----------~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK-----------QKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-----------HHHHHHHHHcccchHHH
Confidence            889999999999999999999999999999999998866554422211           11245677777766543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.58  E-value=0.00015  Score=58.64  Aligned_cols=87  Identities=18%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCC
Q psy5931          57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGS  136 (173)
Q Consensus        57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~  136 (173)
                      +++.++++.++..--. ......++.+...|.++.++|++++|.+.|..++.++|+.+.+|...|..+...-.       
T Consensus       191 g~~~~A~~~~~~al~~-~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------  262 (365)
T 4eqf_A          191 SVLEGVKELYLEAAHQ-NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR-------  262 (365)
T ss_dssp             HHHHHHHHHHHHHHHH-SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------
T ss_pred             hhHHHHHHHHHHHHHh-CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------
Confidence            4455565555544221 11111577888899999999999999999999999999999999888887766421       


Q ss_pred             CchhhhHHHHHHHHHHHchhC
Q psy5931         137 APNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       137 ~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                            -..|+.+|-+|+...
T Consensus       263 ------~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          263 ------SEEAVEAYTRALEIQ  277 (365)
T ss_dssp             ------HHHHHHHHHHHHHHC
T ss_pred             ------HHHHHHHHHHHHhcC
Confidence                  245666676666653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.55  E-value=0.0015  Score=49.14  Aligned_cols=118  Identities=9%  Similarity=0.022  Sum_probs=86.6

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcC-CCCCc------HHHH-----HHHHHHHHHHHhhhhccCChhHHHHHHHHhhhc
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYT-IPSVP------IVDC-----FEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHT   69 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~-lp~i~------v~da-----F~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~t   69 (173)
                      +...|.+..+.|-++-++..+.+... .|.-+      +.+-     ..-....+.||+.+      +++.++++.++..
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~a  114 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN------KDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHH
Confidence            35678888899999999999998664 33333      1111     01223457788875      4566666666554


Q ss_pred             cccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931          70 NLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF  128 (173)
Q Consensus        70 nl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f  128 (173)
                      --.   .+..++.+..+|..+..+|++++|.+.|..|+.++|+.+.+|..-+.....+-
T Consensus       115 l~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A          115 LKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             HHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHh---CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            331   34567889999999999999999999999999999999999988887776653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.55  E-value=0.00033  Score=56.70  Aligned_cols=130  Identities=13%  Similarity=0.056  Sum_probs=90.8

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      .+|.+..+.|-++-++..+.+...+ |...-.++.   ...+.+|...      +++.++++.++..--.   .+..++.
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---~~l~~~~~~~------g~~~~A~~~~~~al~~---~p~~~~~  249 (365)
T 4eqf_A          182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ---TGLGVLFHLS------GEFNRAIDAFNAALTV---RPEDYSL  249 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHSCSSCCHHHH---HHHHHHHHHH------TCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH---HHHHHHHHHC------CCHHHHHHHHHHHHHh---CCCCHHH
Confidence            3466777778888888888887653 331122333   2446777774      4566666666554221   2445789


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      +...|..+.++|++++|.+.|..|+.++|+.+.+|..-|..+..+-.             -..|+.+|-+|.....
T Consensus       250 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al~~~~  312 (365)
T 4eqf_A          250 WNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA-------------YREAVSNFLTALSLQR  312 (365)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999887742             2458888888887643

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.53  E-value=0.00049  Score=58.80  Aligned_cols=122  Identities=11%  Similarity=0.006  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccc-cC-----CCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc
Q psy5931          37 FEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNL-KY-----LTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM  109 (173)
Q Consensus        37 F~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl-~~-----F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql  109 (173)
                      -..+++.+.+++...... .-..|+.+|++++...- ..     =..+..+..+...|..+.++|++++|-+.|..|+.+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            344566666666531110 01125556665443210 00     025677899999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHHhh
Q psy5931         110 HDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKVDY  171 (173)
Q Consensus       110 ~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRiLW  171 (173)
                      +|..+++|...|..+..+-.             -..|+.+|-+|..... +...+..+++++.
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~-------------~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~  352 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKE-------------YDQALADLKKAQEIAPEDKAIQAELLKVKQ  352 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999998877631             3569999999998863 4567777777754

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.52  E-value=0.0017  Score=47.72  Aligned_cols=114  Identities=11%  Similarity=0.010  Sum_probs=82.4

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|.+....|-++-++..+.+...+ |.-  .+++   ...+.||...     .+++.++++.++..-- .-..+...+
T Consensus        46 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~---~~l~~~~~~~-----~~~~~~A~~~~~~~~~-~~~~~~~~~  114 (225)
T 2vq2_A           46 LVRAEIYQYLKVNDKAQESFRQALSIKPDS--AEIN---NNYGWFLCGR-----LNRPAESMAYFDKALA-DPTYPTPYI  114 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH---HHHHHHHHTT-----TCCHHHHHHHHHHHHT-STTCSCHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHH---HHHHHHHHHh-----cCcHHHHHHHHHHHHc-CcCCcchHH
Confidence            45677888888888888888887553 221  2222   3456677763     0456666666655432 223456678


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      .+...|..+.++|++++|...|..++.+.|..+.+|...|..+...
T Consensus       115 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  160 (225)
T 2vq2_A          115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA  160 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence            8999999999999999999999999999999899998888887665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.50  E-value=0.00089  Score=55.26  Aligned_cols=133  Identities=11%  Similarity=0.070  Sum_probs=97.5

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHH---HHHHHH---------HHHHHHHhhhhccCChhHHHHHHHHhhhcc
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIV---DCFEKI---------RQQVKCYLQMAALDGKNQLQEGLEVIEHTN   70 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~---daF~Kl---------rEq~kc~l~~~~~~~~~el~~gL~vi~~tn   70 (173)
                      ..+|.+-.+.|-++-++..+.++..+. -.-.   ++...+         ...+.++.+.      +++.++++.++..-
T Consensus        98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~  170 (450)
T 2y4t_A           98 LQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGS------GDYTAAIAFLDKIL  170 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence            467888888899999999998887652 1222   444333         3446777764      45777777766543


Q ss_pred             ccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHH
Q psy5931          71 LKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCF  150 (173)
Q Consensus        71 l~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~Cy  150 (173)
                      -   ..+...+.+...|..+.++|++++|.+.|..++.++|..+.+|..-|..+...-.             ...|+.+|
T Consensus       171 ~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~  234 (450)
T 2y4t_A          171 E---VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD-------------HELSLSEV  234 (450)
T ss_dssp             H---HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC-------------HHHHHHHH
T ss_pred             H---hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHH
Confidence            2   1345678899999999999999999999999999999999999999988766531             35577777


Q ss_pred             HHHchhCC
Q psy5931         151 MHACRHQK  158 (173)
Q Consensus       151 LqA~~~~~  158 (173)
                      -++.....
T Consensus       235 ~~~~~~~p  242 (450)
T 2y4t_A          235 RECLKLDQ  242 (450)
T ss_dssp             HHHHHHCT
T ss_pred             HHHHHhCC
Confidence            77776643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.49  E-value=0.00034  Score=46.04  Aligned_cols=95  Identities=15%  Similarity=0.147  Sum_probs=70.0

Q ss_pred             HHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh--hHHHHHH
Q psy5931          42 QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV--MVKAWAL  119 (173)
Q Consensus        42 Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~--~~kaW~~  119 (173)
                      ..+.+++..      +++.++++..+..--.   .+..++.+...|.++..+|++++|.+.|..++.++|.  .+.+|..
T Consensus        11 ~~~~~~~~~------~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A           11 LEGVLQYDA------GNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             GHHHHHHSS------CCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             HHHHHHHHh------hhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            345666653      4555666655543211   1334678899999999999999999999999999999  9999999


Q ss_pred             HHHhHHhh-cCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931         120 WGDYMEAQ-FTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus       120 WG~~~d~~-f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      .|..+..+ -.             -..|+.+|-+++....
T Consensus        82 l~~~~~~~~~~-------------~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           82 KADALRYIEGK-------------EVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHTTCSSC-------------SHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHhCC-------------HHHHHHHHHHHhhccc
Confidence            98887655 31             2458888888887643

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.49  E-value=0.00077  Score=58.23  Aligned_cols=147  Identities=5%  Similarity=-0.053  Sum_probs=98.4

Q ss_pred             hHHHHHHHhCCC-hHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHL-TSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l-~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      +..|.+-.+.|- ++-++..+.+.-.+ +-.-.+++..   .+.||..+.      ++.++++.++..--   ..+...+
T Consensus       135 ~~~g~~l~~~g~d~~eAl~~~~~al~l-~P~~~~a~~~---~g~~~~~~g------~~~eAl~~~~kal~---ldP~~~~  201 (382)
T 2h6f_A          135 HFRRVLLKSLQKDLHEEMNYITAIIEE-QPKNYQVWHH---RRVLVEWLR------DPSQELEFIADILN---QDAKNYH  201 (382)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHHHHH---HHHHHHHHT------CCTTHHHHHHHHHH---HCTTCHH
T ss_pred             HHHHHHHHHcccCHHHHHHHHHHHHHH-CCCCHHHHHH---HHHHHHHcc------CHHHHHHHHHHHHH---hCccCHH
Confidence            456777778886 88888888887654 2222334333   344566542      23334443333221   2456678


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC-c
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE-S  160 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~-~  160 (173)
                      .+..+|.++.++|++++|-..|..|+.++|..+.+|..-|..+..+-...       +......++.+|-+|+....+ .
T Consensus       202 a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~-------~eA~~~~el~~~~~Al~l~P~~~  274 (382)
T 2h6f_A          202 AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN-------DRAVLEREVQYTLEMIKLVPHNE  274 (382)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC-------SHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc-------hHHHHHHHHHHHHHHHHHCCCCH
Confidence            99999999999999999999999999999999999999999888753221       112345568999999987532 2


Q ss_pred             hhhhhHHHH
Q psy5931         161 MSRKYLAKV  169 (173)
Q Consensus       161 k~Rk~laRi  169 (173)
                      .+..+++.+
T Consensus       275 ~a~~~l~~l  283 (382)
T 2h6f_A          275 SAWNYLKGI  283 (382)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            334444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.47  E-value=0.00035  Score=51.07  Aligned_cols=82  Identities=10%  Similarity=-0.101  Sum_probs=66.3

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR  155 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~  155 (173)
                      ++..++.+..+|..+.+.|++++|.+.|..|+.++|+.+.+|...|..+..+-  +           -..|+.+|-+|+.
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--~-----------~~~A~~~~~~al~   73 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASG--Q-----------HEKAAEDAELATV   73 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc--C-----------HHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999998876653  1           3568999999988


Q ss_pred             hCCC-chhhhhHHHHh
Q psy5931         156 HQKE-SMSRKYLAKVD  170 (173)
Q Consensus       156 ~~~~-~k~Rk~laRiL  170 (173)
                      .+.+ ..+.-.++.++
T Consensus        74 ~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           74 VDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HCTTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHH
Confidence            7532 34444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.47  E-value=0.0033  Score=43.00  Aligned_cols=111  Identities=12%  Similarity=0.005  Sum_probs=84.4

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcC-CCCCc-HHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhh
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYT-IPSVP-IVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMT   79 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~-lp~i~-v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qk   79 (173)
                      ....|....+.|-++-++..+.++.. -|+-+ ..++..   ..+.||+..      +++.++++.++..--.+-..+..
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~---~lg~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~   75 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALY---WLGESYYAT------RNFQLAEAQFRDLVSRYPTHDKA   75 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHH---HHHHHHHHT------TCHHHHHHHHHHHHHHCTTSTTH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHH---HHHHHHHHh------ccHHHHHHHHHHHHHHCCCCccc
Confidence            45678888999999999999999766 45433 224443   357888885      56778888777654434344445


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHH
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG  121 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG  121 (173)
                      ++.+...|..+.++|++++|.+.|..++..+|+.+.++..-.
T Consensus        76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            888999999999999999999999999999998887765433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.47  E-value=0.0014  Score=50.49  Aligned_cols=150  Identities=11%  Similarity=-0.028  Sum_probs=97.8

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ...|....+.|-++-++..+.+...+..-.......-....+.+|+....... -.-+..++++....+    .++..+.
T Consensus         9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~   84 (338)
T 3ro2_A            9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG----DQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc----ccHHHHH
Confidence            45688889999999999999997665322222222334456778887532110 111555555555543    3677899


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhh------HHHHHHHHHhHHhhcCCCCC--C-----CCCchhhhHHHHHH
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVM------VKAWALWGDYMEAQFTNPSP--P-----GSAPNMVLGVFAVT  148 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~------~kaW~~WG~~~d~~f~~~~~--~-----~~~~~~~~~~~Ai~  148 (173)
                      .+...|.++..+|++++|...|..|+.+.+..      +.+|..-|.....+......  +     ........-..|+.
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999987754      34777777777666541100  0     01123334566777


Q ss_pred             HHHHHchh
Q psy5931         149 CFMHACRH  156 (173)
Q Consensus       149 CyLqA~~~  156 (173)
                      .|-+|...
T Consensus       165 ~~~~a~~~  172 (338)
T 3ro2_A          165 LYEENLSL  172 (338)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.45  E-value=0.0036  Score=47.50  Aligned_cols=132  Identities=12%  Similarity=-0.024  Sum_probs=97.0

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCc-HHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVP-IVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~-v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|.+..+.|-++-++..+.+....|.-| ..+++   ...+.+|+..      +++.++++.++..--.   .+...+
T Consensus       109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~~la~~~~~~------g~~~~A~~~~~~~~~~---~~~~~~  176 (252)
T 2ho1_A          109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF---ENLGLVSLQM------KKPAQAKEYFEKSLRL---NRNQPS  176 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHH---HHHHHHHHHT------TCHHHHHHHHHHHHHH---CSCCHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHH---HHHHHHHHHc------CCHHHHHHHHHHHHhc---CcccHH
Confidence            467888899999999999999987733222 23333   3457788774      4566666666554221   233478


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE  159 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~  159 (173)
                      .+...|.++.++|++++|...|..++...|..+.+|...+......-  +           -..|+..|-++.....+
T Consensus       177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~-----------~~~A~~~~~~~~~~~p~  241 (252)
T 2ho1_A          177 VALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE--D-----------RDTAASYGLQLKRLYPG  241 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc--C-----------HHHHHHHHHHHHHHCCC
Confidence            89999999999999999999999999999999999988888776542  1           34577778777776543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.41  E-value=0.0012  Score=52.84  Aligned_cols=66  Identities=21%  Similarity=0.122  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .++.+...|.++.++|++++|...|..++.++|..+.+|...|..+...-.             -..|+..|-+|....
T Consensus       250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al~~~  315 (368)
T 1fch_A          250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-------------HREAVEHFLEALNMQ  315 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHhC
Confidence            355666666666666666666666666666666666666666666554421             245777777777654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.40  E-value=0.0022  Score=42.57  Aligned_cols=109  Identities=14%  Similarity=0.128  Sum_probs=78.9

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|.+....|-++-++..+.+.... |.-  .++   ....+.|+...      +++.+++..++..--.   .+...+
T Consensus        13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~---~~~la~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~   78 (125)
T 1na0_A           13 YNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEA---WYNLGNAYYKQ------GDYDEAIEYYQKALEL---DPNNAE   78 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH---HHHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHH---HHHHHHHHHHh------CCHHHHHHHHHHHHHh---CCccHH
Confidence            45678888889999999999887653 321  122   33457777764      4566666666543221   233467


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHH
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYME  125 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d  125 (173)
                      .+...|..+..+|++++|.+.|..+++++|..+.++...|....
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            88889999999999999999999999999998888877776543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.40  E-value=0.0013  Score=56.46  Aligned_cols=144  Identities=10%  Similarity=-0.004  Sum_probs=95.4

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhcccc----CCCchh
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLK----YLTKEM   78 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~----~F~~~q   78 (173)
                      .++.+-.++|-++-++..+.++..+ |.-  .++   ....+.+|...      +++.+++++++..--.    -..++.
T Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~---~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~p~~  514 (597)
T 2xpi_A          446 FLGMQHMQLGNILLANEYLQSSYALFQYD--PLL---LNELGVVAFNK------SDMQTAINHFQNALLLVKKTQSNEKP  514 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCCCC--HHH---HHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHH---HHHHHHHHHHh------CCHHHHHHHHHHHHHhhhccccchhh
Confidence            3445555555555555555554432 111  111   22334555543      3456666665543111    124445


Q ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931          79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus        79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      .++.+...|..+.+.|++++|.+.|..++.++|..+.+|..-|..+...-.             -..|+..|-++...+.
T Consensus       515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI-------------PGLAITHLHESLAISP  581 (597)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-------------HHHHHHHHHHHHhcCC
Confidence            589999999999999999999999999999999999999999988776531             3568888888888753


Q ss_pred             -CchhhhhHHHHhh
Q psy5931         159 -ESMSRKYLAKVDY  171 (173)
Q Consensus       159 -~~k~Rk~laRiLW  171 (173)
                       +..++..+++++.
T Consensus       582 ~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          582 NEIMASDLLKRALE  595 (597)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CChHHHHHHHHHHh
Confidence             4566777777653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.39  E-value=0.0033  Score=50.51  Aligned_cols=151  Identities=11%  Similarity=-0.032  Sum_probs=97.7

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      +...|....+.|-++-++..+.+...+..-.......-....+.||+....... ..-+..++++....+    .++..+
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~   87 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG----DQLGEA   87 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----CHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc----ccHHHH
Confidence            346788999999999999999997765322222122234455778877522110 111555555655553    367889


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhh------HHHHHHHHHhHHhhcCC-------CCCCCCCchhhhHHHHH
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM------VKAWALWGDYMEAQFTN-------PSPPGSAPNMVLGVFAV  147 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~------~kaW~~WG~~~d~~f~~-------~~~~~~~~~~~~~~~Ai  147 (173)
                      +.+...|.++..+|++++|...|..|+.+.+..      +.+|..-|.........       ............-..|+
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            999999999999999999999999999998864      45777777666555430       00001112334455677


Q ss_pred             HHHHHHchh
Q psy5931         148 TCFMHACRH  156 (173)
Q Consensus       148 ~CyLqA~~~  156 (173)
                      ..|-+|...
T Consensus       168 ~~~~~al~~  176 (406)
T 3sf4_A          168 DFYEENLSL  176 (406)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777766654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.39  E-value=0.001  Score=62.46  Aligned_cols=117  Identities=11%  Similarity=0.098  Sum_probs=89.5

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      .+.+|.+-.+.|-++-++..+.+.-.+ +-.-.+++.   ..+.+|.++      +++.++++..+..--   -.+..++
T Consensus        46 ~~nLg~~l~~~g~~~eA~~~~~~Al~l-~P~~~~a~~---nLg~~l~~~------g~~~~A~~~~~kAl~---l~P~~~~  112 (723)
T 4gyw_A           46 HSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYS---NMGNTLKEM------QDVQGALQCYTRAIQ---INPAFAD  112 (723)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHH---HHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHH---HHHHHHHHc------CCHHHHHHHHHHHHH---hCCCCHH
Confidence            457889999999999999999986554 122234443   447788875      445555555543311   1456689


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCC
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNP  131 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~  131 (173)
                      .+...|.++.++|++++|-+.|..|+.++|+.+.+|...|..+..+..-+
T Consensus       113 a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A          113 AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            99999999999999999999999999999999999999999988876443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.39  E-value=0.0012  Score=43.79  Aligned_cols=108  Identities=16%  Similarity=0.139  Sum_probs=77.6

Q ss_pred             HHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHH
Q psy5931          41 RQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW  120 (173)
Q Consensus        41 rEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~W  120 (173)
                      ...+.++...      +++.++++.++..--.   .+...+.+...|..+.+.|++++|.+.|..++.++|..+..|...
T Consensus        13 ~~~~~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A           13 YNLGNAYYKQ------GDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             HHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHc------CCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            3456677763      4566666666544221   134467888999999999999999999999999999999999998


Q ss_pred             HHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHHh
Q psy5931         121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKVD  170 (173)
Q Consensus       121 G~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRiL  170 (173)
                      |..+...-  +           -..|+.+|-++..... +..++..++.+.
T Consensus        84 a~~~~~~~--~-----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           84 GNAYYKQG--D-----------YDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HHHHHHTT--C-----------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhc--C-----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            88776542  1           3568888888887642 344555555553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.39  E-value=0.0016  Score=48.52  Aligned_cols=94  Identities=12%  Similarity=0.075  Sum_probs=75.8

Q ss_pred             HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931          39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA  118 (173)
Q Consensus        39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~  118 (173)
                      .....+.+++..      +++.++++..+.. +   .+  .+..+...|..+.++|++++|.+.|..|+.++|+.+.+|.
T Consensus         8 ~~~~~g~~~~~~------~~~~~A~~~~~~a-~---~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   75 (213)
T 1hh8_A            8 SLWNEGVLAADK------KDWKGALDAFSAV-Q---DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF   75 (213)
T ss_dssp             HHHHHHHHHHHT------TCHHHHHHHHHTS-S---SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHh------CCHHHHHHHHHHH-c---CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence            345667777774      6788999988877 3   12  5789999999999999999999999999999999999999


Q ss_pred             HHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931         119 LWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       119 ~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .-|..+..+-  +           -..|+.+|-+|+...
T Consensus        76 ~lg~~~~~~~--~-----------~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           76 QRGMLYYQTE--K-----------YDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHTT--C-----------HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcc--c-----------HHHHHHHHHHHHHhC
Confidence            9998876653  1           356888888888754

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.38  E-value=0.0008  Score=43.37  Aligned_cols=77  Identities=16%  Similarity=0.119  Sum_probs=58.6

Q ss_pred             HHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHH
Q psy5931          41 RQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW  120 (173)
Q Consensus        41 rEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~W  120 (173)
                      ...+.+++..      +++.++++..+..--.   .+..++.+...|.++.++|++++|.+.|..+++++|+.+.+|...
T Consensus        13 ~~la~~~~~~------~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l   83 (91)
T 1na3_A           13 YNLGNAYYKQ------GDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL   83 (91)
T ss_dssp             HHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHc------cCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            4456677764      4566666655543221   234578899999999999999999999999999999999999988


Q ss_pred             HHhHHh
Q psy5931         121 GDYMEA  126 (173)
Q Consensus       121 G~~~d~  126 (173)
                      |.....
T Consensus        84 ~~~~~~   89 (91)
T 1na3_A           84 GNAKQK   89 (91)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            876654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.37  E-value=0.0005  Score=47.80  Aligned_cols=71  Identities=11%  Similarity=0.056  Sum_probs=60.5

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR  155 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~  155 (173)
                      .+..++.+...|..+.++|++++|.+.|..|+.++|+.+.+|..-|..+..+-.             -..|+.+|.+|+.
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al~   89 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR-------------YEQGVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHH
Confidence            577889999999999999999999999999999999999999999988777642             3457888888877


Q ss_pred             hCCC
Q psy5931         156 HQKE  159 (173)
Q Consensus       156 ~~~~  159 (173)
                      ...+
T Consensus        90 ~~p~   93 (117)
T 3k9i_A           90 ETSD   93 (117)
T ss_dssp             HHCC
T ss_pred             hCCC
Confidence            6433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.36  E-value=0.0013  Score=54.79  Aligned_cols=80  Identities=13%  Similarity=0.005  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .++..+...|..+.++|++++|...|..|+.++|+.+++|...|..+..+-.             -..|+.+|-+|+...
T Consensus       194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~al~l~  260 (336)
T 1p5q_A          194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-------------FELARADFQKVLQLY  260 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHHC
Confidence            3478999999999999999999999999999999999999999998876631             356899999998875


Q ss_pred             C-CchhhhhHHHHh
Q psy5931         158 K-ESMSRKYLAKVD  170 (173)
Q Consensus       158 ~-~~k~Rk~laRiL  170 (173)
                      . +..++..+++++
T Consensus       261 P~~~~a~~~l~~~~  274 (336)
T 1p5q_A          261 PNNKAAKTQLAVCQ  274 (336)
T ss_dssp             SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            3 344555555553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.35  E-value=0.0013  Score=53.81  Aligned_cols=47  Identities=15%  Similarity=0.197  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHH
Q psy5931          79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYME  125 (173)
Q Consensus        79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d  125 (173)
                      .++.+...|..+.+.|++++|.+.|..++.++|+.+.+|...|....
T Consensus       270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  316 (388)
T 1w3b_A          270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            34556666666666666666666666666666666666666555543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.0013  Score=43.81  Aligned_cols=81  Identities=14%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh-----
Q psy5931          39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM-----  113 (173)
Q Consensus        39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~-----  113 (173)
                      .....+.+++..      +++.++++..+..--   ..+..++.+...|..+.++|++++|-+.|..|+.++|+.     
T Consensus         6 ~~~~~g~~~~~~------~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   76 (111)
T 2l6j_A            6 KQKEQGNSLFKQ------GLYREAVHCYDQLIT---AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHTT------TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred             HHHHHHHHHHHc------CCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence            345567777764      456666665554322   134457899999999999999999999999999999997     


Q ss_pred             -HHHHHHHHHhHHhhc
Q psy5931         114 -VKAWALWGDYMEAQF  128 (173)
Q Consensus       114 -~kaW~~WG~~~d~~f  128 (173)
                       ++++...|.....+-
T Consensus        77 ~~~~~~~~~~~~~~~~   92 (111)
T 2l6j_A           77 RSKLQYRLELAQGAVG   92 (111)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence             888888888877765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.33  E-value=0.00073  Score=48.52  Aligned_cols=82  Identities=17%  Similarity=0.030  Sum_probs=64.7

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR  155 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~  155 (173)
                      .+...+.+...|..+.+.|++++|...|..++.++|+.+.+|..-|..+..+-  +           -..|+.+|-+|+.
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~-----------~~~A~~~~~~al~   80 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG--L-----------YEQALQSYSYGAL   80 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh--h-----------HHHHHHHHHHHHh
Confidence            35667788889999999999999999999999999999999999888876653  1           3569999999998


Q ss_pred             hCC-CchhhhhHHHHh
Q psy5931         156 HQK-ESMSRKYLAKVD  170 (173)
Q Consensus       156 ~~~-~~k~Rk~laRiL  170 (173)
                      .+. +..+.-.++.++
T Consensus        81 ~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           81 MDINEPRFPFHAAECH   96 (142)
T ss_dssp             HCTTCTHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHH
Confidence            743 333444455443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.33  E-value=0.0034  Score=55.10  Aligned_cols=133  Identities=9%  Similarity=-0.051  Sum_probs=98.8

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ...+|.+..+.|-++-++..+.+...+. -.-.++.   ...+.||+++      +++.++++.++..--.   .+..++
T Consensus        26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~---~~lg~~~~~~------g~~~~A~~~~~~al~~---~p~~~~   92 (568)
T 2vsy_A           26 WLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAV---ARLGRVRWTQ------QRHAEAAVLLQQASDA---APEHPG   92 (568)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHH---HHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH---HHHHHHHHHC------CCHHHHHHHHHHHHhc---CCCCHH
Confidence            3567888899999999999999987752 1223333   4457788875      4566666666544321   344588


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .+...|..+.++|++++|.+.|..|++++|+.+.+|...|..+..+..-.          -...|+.+|-++...+
T Consensus        93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g----------~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           93 IALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR----------ALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT----------THHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc----------cHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999887763211          1456777777777664

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.32  E-value=0.002  Score=52.59  Aligned_cols=128  Identities=13%  Similarity=0.103  Sum_probs=90.4

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|.+-.+.|-++-++..+.+...+ |..  .+++   ...+.+|.+.      +++.++++.++..--.   .+..++
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~---~~l~~~~~~~------g~~~~A~~~~~~al~~---~p~~~~  306 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAY---CNLANALKEK------GSVAEAEDCYNTALRL---CPTHAD  306 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC--HHHH---HHHHHHHHHH------SCHHHHHHHHHHHHHH---CTTCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHH---HHHHHHHHHc------CCHHHHHHHHHHHHhh---CcccHH
Confidence            34566677777777777777776554 322  2332   2345566653      3455666655543221   244577


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .+...|.++.+.|+.++|.+.|..++.++|+.+.+|..-|..+.+.-.             -..|+.+|-+|++..
T Consensus       307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~a~~~~  369 (388)
T 1w3b_A          307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-------------LQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC-------------CHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhhC
Confidence            888999999999999999999999999999999999988887766531             246888998888764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.32  E-value=0.0016  Score=54.39  Aligned_cols=120  Identities=11%  Similarity=0.039  Sum_probs=79.3

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC--------CCCcHHHHHHHHHHHHHHHhhhhccCChhH-HHHHHHHhhhccccC
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI--------PSVPIVDCFEKIRQQVKCYLQMAALDGKNQ-LQEGLEVIEHTNLKY   73 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l--------p~i~v~daF~KlrEq~kc~l~~~~~~~~~e-l~~gL~vi~~tnl~~   73 (173)
                      |.+|.|-...|-++-++..+.+--.+        ..+.+..++   -..+.+|+.+.....-.+ +..++++..... +-
T Consensus        55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~---~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~-~~  130 (472)
T 4g1t_A           55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTW---GNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS-SP  130 (472)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHH---HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHH---HHHHHHHHHcCChHHHHHHHHHHHHHhHhcc-cc
Confidence            56889999999999999998873221        012222222   234677777521100001 333344333221 11


Q ss_pred             CCchhhHHHHHHHHHHHHHhCC--chHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          74 LTKEMTAEFYALKGMLLAQIGR--SAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        74 F~~~qkaE~~~LKG~fl~~Lg~--~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                       .....++.+..+|..+.++|+  +++|-..|..|+.++|+.+.+|...|....++
T Consensus       131 -~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l  185 (472)
T 4g1t_A          131 -YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL  185 (472)
T ss_dssp             -SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             -cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence             234578999999999988874  79999999999999999999999999876554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.31  E-value=0.00075  Score=49.65  Aligned_cols=82  Identities=15%  Similarity=-0.021  Sum_probs=65.6

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR  155 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~  155 (173)
                      .+...+.+...|..+.+.|++++|...|..++.++|+.+.+|..-|..+..+-  +           -..|+.+|-+|+.
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~-----------~~~A~~~~~~al~   83 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG--Q-----------YDLAIHSYSYGAV   83 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--h-----------HHHHHHHHHHHHh
Confidence            36678888899999999999999999999999999999999998888776552  1           3569999999998


Q ss_pred             hCC-CchhhhhHHHHh
Q psy5931         156 HQK-ESMSRKYLAKVD  170 (173)
Q Consensus       156 ~~~-~~k~Rk~laRiL  170 (173)
                      ... +..+.-.++.++
T Consensus        84 l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HSTTCTHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHH
Confidence            753 344555555554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.31  E-value=0.0011  Score=48.59  Aligned_cols=104  Identities=16%  Similarity=0.127  Sum_probs=76.2

Q ss_pred             HHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHH-HHHhCCc--hHHHHHHHHHHccchhhHHHH
Q psy5931          41 RQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGML-LAQIGRS--AEANKAFSAAVQMHDVMVKAW  117 (173)
Q Consensus        41 rEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~f-l~~Lg~~--deA~~~F~~Avql~~~~~kaW  117 (173)
                      ...+.||+.+      +++.++++..+..--.   .+..++.+...|.. +.+.|++  ++|.+.|..++.++|+.+.+|
T Consensus        48 ~~lg~~~~~~------~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  118 (177)
T 2e2e_A           48 ALLGEYYLWQ------NDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL  118 (177)
T ss_dssp             HHHHHHHHHT------TCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHc------CCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHH
Confidence            4457777774      4555666555443211   22347788999999 7799998  999999999999999999999


Q ss_pred             HHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhH
Q psy5931         118 ALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYL  166 (173)
Q Consensus       118 ~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~l  166 (173)
                      ...|.....+-  +           -..|+.+|-++.....+...+..+
T Consensus       119 ~~la~~~~~~g--~-----------~~~A~~~~~~al~~~p~~~~~~~~  154 (177)
T 2e2e_A          119 MLLASDAFMQA--N-----------YAQAIELWQKVMDLNSPRINRTQL  154 (177)
T ss_dssp             HHHHHHHHHTT--C-----------HHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred             HHHHHHHHHcc--c-----------HHHHHHHHHHHHhhCCCCccHHHH
Confidence            99998876652  1           356999999999886655544443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.28  E-value=0.0013  Score=50.18  Aligned_cols=88  Identities=22%  Similarity=0.198  Sum_probs=67.2

Q ss_pred             hHHHHHHHHhhhccc-cCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCC
Q psy5931          57 NQLQEGLEVIEHTNL-KYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPG  135 (173)
Q Consensus        57 ~el~~gL~vi~~tnl-~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~  135 (173)
                      .++.++++..+..-- .-..++..++.+...|..+...|++++|.+.|..|+.++|..+.+|...|..+...-.      
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~------   92 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN------   92 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC------
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC------
Confidence            456666666554322 1134678999999999999999999999999999999999999999999988765421      


Q ss_pred             CCchhhhHHHHHHHHHHHchhC
Q psy5931         136 SAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       136 ~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                             -..|+.+|-+|+...
T Consensus        93 -------~~~A~~~~~~al~~~  107 (275)
T 1xnf_A           93 -------FDAAYEAFDSVLELD  107 (275)
T ss_dssp             -------HHHHHHHHHHHHHHC
T ss_pred             -------HHHHHHHHHHHHhcC
Confidence                   244666666666653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.28  E-value=0.0027  Score=48.93  Aligned_cols=136  Identities=13%  Similarity=-0.005  Sum_probs=96.1

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcC-CCCCc-HHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYT-IPSVP-IVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~-lp~i~-v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ...|...-+.|-++-++..+.++.. .|.-+ ..++...   .+.||+.+      +++.++++..+..--.+-..+...
T Consensus         8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~---lg~~~~~~------~~~~~A~~~~~~~l~~~P~~~~~~   78 (225)
T 2yhc_A            8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLD---LIYAYYKN------ADLPLAQAAIDRFIRLNPTHPNID   78 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHH---HHHHHHHT------TCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH---HHHHHHhc------CCHHHHHHHHHHHHHHCcCCCcHH
Confidence            3467788888999999999999765 35433 3455544   47899985      568888888777654444445556


Q ss_pred             HHHHHHHHHHHH------------------hCCchHHHHHHHHHHccchhhHHHHHHH-----------------HHhHH
Q psy5931          81 EFYALKGMLLAQ------------------IGRSAEANKAFSAAVQMHDVMVKAWALW-----------------GDYME  125 (173)
Q Consensus        81 E~~~LKG~fl~~------------------Lg~~deA~~~F~~Avql~~~~~kaW~~W-----------------G~~~d  125 (173)
                      +-+..+|..+.+                  .|+.++|-+.|..++..+|+.+.+|...                 |.+..
T Consensus        79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~  158 (225)
T 2yhc_A           79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT  158 (225)
T ss_dssp             HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678888988876                  5689999999999999999988877432                 22222


Q ss_pred             hhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931         126 AQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKES  160 (173)
Q Consensus       126 ~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~  160 (173)
                      +.   .          --..|+.+|-+++..+.+.
T Consensus       159 ~~---~----------~~~~A~~~~~~~l~~~p~~  180 (225)
T 2yhc_A          159 ER---G----------AWVAVVNRVEGMLRDYPDT  180 (225)
T ss_dssp             HH---T----------CHHHHHHHHHHHHHHSTTS
T ss_pred             Hc---C----------cHHHHHHHHHHHHHHCcCC
Confidence            21   1          1356888888888876443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.28  E-value=0.0012  Score=51.14  Aligned_cols=133  Identities=9%  Similarity=-0.017  Sum_probs=91.9

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC-------CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccC-
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI-------PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKY-   73 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-------p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~-   73 (173)
                      +..+|.+....|-++.++..+.+...+       ......++   ....+.||..+      +++.++++.++..--.+ 
T Consensus        30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---~~~la~~~~~~------g~~~~A~~~~~~al~~~~  100 (311)
T 3nf1_A           30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATM---LNILALVYRDQ------NKYKDAANLLNDALAIRE  100 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHH---HHHHHHHHHHT------TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHHHHHC------CCHHHHHHHHHHHHHHHH
Confidence            456888999999999999999987664       12222222   34457777774      34444444444322111 


Q ss_pred             ----CCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccc--------hhhHHHHHHHHHhHHhhcCCCCCCCCCchhh
Q psy5931          74 ----LTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMH--------DVMVKAWALWGDYMEAQFTNPSPPGSAPNMV  141 (173)
Q Consensus        74 ----F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~--------~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~  141 (173)
                          -.++..+..+...|.++..+|++++|...|..++.+.        +..+.+|...|..+...-.            
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------------  168 (311)
T 3nf1_A          101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK------------  168 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC------------
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC------------
Confidence                2357789999999999999999999999999999985        6777888888877665421            


Q ss_pred             hHHHHHHHHHHHchh
Q psy5931         142 LGVFAVTCFMHACRH  156 (173)
Q Consensus       142 ~~~~Ai~CyLqA~~~  156 (173)
                       -..|+.+|-++...
T Consensus       169 -~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          169 -YEEVEYYYQRALEI  182 (311)
T ss_dssp             -HHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHH
Confidence             24566666666654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.27  E-value=0.00086  Score=44.56  Aligned_cols=69  Identities=14%  Similarity=0.230  Sum_probs=53.8

Q ss_pred             HHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH-HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931          41 RQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE-FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA  118 (173)
Q Consensus        41 rEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE-~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~  118 (173)
                      .+++.+++..      +++.++++.++..--.   .+..++ .+...|..+.++|++++|.+.|..|+.++|+.+.+|.
T Consensus         4 ~~~a~~~~~~------~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   73 (99)
T 2kc7_A            4 LKTIKELINQ------GDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA   73 (99)
T ss_dssp             HHHHHHHHHH------TCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred             HHHHHHHHHc------CCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            3567777764      4677777766654321   233456 8999999999999999999999999999999999883

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.25  E-value=0.0025  Score=48.20  Aligned_cols=134  Identities=11%  Similarity=0.011  Sum_probs=93.0

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC------CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhcccc---
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI------PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLK---   72 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l------p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~---   72 (173)
                      ...+|.+-...|-++-++..+.+...+      ++-+  +...-....+.||...      +++.++++.++..--.   
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP--AVAATLNNLAVLYGKR------GKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH--HHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHH
Confidence            356788888999999999999887654      2211  1222234456777764      3344444443332110   


Q ss_pred             --CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc--------chhhHHHHHHHHHhHHhhcCCCCCCCCCchhhh
Q psy5931          73 --YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM--------HDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVL  142 (173)
Q Consensus        73 --~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql--------~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~  142 (173)
                        .-..+..++.+...|.++..+|++++|...|..++.+        +|..+.+|...|..+..+-.             
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------  184 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-------------  184 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-------------
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-------------
Confidence              0124678999999999999999999999999999999        88888999999988877642             


Q ss_pred             HHHHHHHHHHHchh
Q psy5931         143 GVFAVTCFMHACRH  156 (173)
Q Consensus       143 ~~~Ai~CyLqA~~~  156 (173)
                      -..|+.+|-++...
T Consensus       185 ~~~A~~~~~~~l~~  198 (283)
T 3edt_B          185 YQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            24566677666654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.24  E-value=0.00076  Score=46.80  Aligned_cols=82  Identities=12%  Similarity=0.018  Sum_probs=64.4

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR  155 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~  155 (173)
                      .+..++.+...|..+.+.|++++|...|..|+.++|+.+.+|..-|..+..+-.             -..|+.+|-+|++
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-------------~~~A~~~~~~al~   71 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-------------PEQALADCRRALE   71 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999988766531             2468888888888


Q ss_pred             hCC-CchhhhhHHHHh
Q psy5931         156 HQK-ESMSRKYLAKVD  170 (173)
Q Consensus       156 ~~~-~~k~Rk~laRiL  170 (173)
                      .+. +..+.-.++.++
T Consensus        72 ~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B           72 LDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             HCTTCHHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHH
Confidence            643 234444455443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.22  E-value=0.0007  Score=46.52  Aligned_cols=67  Identities=15%  Similarity=0.071  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ..+..+...|..+.+.|++++|.+.|..|+.++|..+.+|...|..+..+-.             -..|+.+|-+|+...
T Consensus        17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~al~~~   83 (115)
T 2kat_A           17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD-------------RAGARQAWESGLAAA   83 (115)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhc
Confidence            3467899999999999999999999999999999999999999998877631             345888888887653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.22  E-value=0.0026  Score=55.35  Aligned_cols=118  Identities=10%  Similarity=0.004  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCC-------chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHc
Q psy5931          37 FEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLT-------KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQ  108 (173)
Q Consensus        37 F~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~-------~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avq  108 (173)
                      -...++.+.+|+...... .-..|..++++..+..  .|.       .+.++..+...|..+.++|++++|...|..|+.
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~--~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY--GLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC--SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            345667777777641100 0112444454433321  122       234478999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHH
Q psy5931         109 MHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKV  169 (173)
Q Consensus       109 l~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRi  169 (173)
                      ++|+.+++|..-|..+..+-  +           -..|+.+|-+|+.++. +..++..++++
T Consensus       346 ~~p~~~~a~~~~g~a~~~~g--~-----------~~~A~~~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          346 LDSANEKGLYRRGEAQLLMN--E-----------FESAKGDFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HSTTCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHcc--C-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999998877663  1           3569999999998753 34455555554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.21  E-value=0.0051  Score=49.18  Aligned_cols=153  Identities=10%  Similarity=0.029  Sum_probs=100.1

Q ss_pred             HHHHHHhCCChHHHHHHHHhhcCC--CCCcHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           5 FGKIARKHHLTSVCLDSLFRLYTI--PSVPIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         5 fa~iARkh~l~~vc~~~L~ki~~l--p~i~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ++.+-...|-++.++..+.+...+  +.-+......-+..-+.||..+..... -.-+..+|++++...-   .++..+.
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~  197 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD---NEEFDVK  197 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC---CHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc---chhHHHH
Confidence            455555667778888888887653  111111001112333556655421100 1116667777666532   5778899


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhh------HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVM------VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR  155 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~------~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~  155 (173)
                      ++..-|.++.++|++++|.+.|..|+.+.+..      +.+|..-|.....+-..            -..|+.+|-+|..
T Consensus       198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~------------~~~A~~~~~~Al~  265 (293)
T 3u3w_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE------------EAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc------------HHHHHHHHHHHHH
Confidence            99999999999999999999999999998654      78888888887776421            2458889988887


Q ss_pred             hCCCchhhhhHHHHhhc
Q psy5931         156 HQKESMSRKYLAKVDYI  172 (173)
Q Consensus       156 ~~~~~k~Rk~laRiLWL  172 (173)
                      .....+...++..++++
T Consensus       266 i~~~~~~~~~~~~l~~~  282 (293)
T 3u3w_A          266 FFDILEMHAYKEALVNK  282 (293)
T ss_dssp             HHHHTTCTGGGGGGTTC
T ss_pred             HHHHhCCHHHHHHHHHH
Confidence            65555555566665543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.19  E-value=0.0016  Score=54.25  Aligned_cols=116  Identities=9%  Similarity=0.014  Sum_probs=85.8

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcC-CCCCc---------HHHH-HHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccc
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYT-IPSVP---------IVDC-FEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNL   71 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~-lp~i~---------v~da-F~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl   71 (173)
                      ...|.+..+.|-++-++..+.+... .|+-+         +... ..-....+.||+.+      +++.++++.++..--
T Consensus       151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~------g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL------QAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHH
Confidence            4578888889999999999988655 34432         0000 12223457788875      456677766655432


Q ss_pred             cCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          72 KYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        72 ~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      .   .+..++.+..+|..+..+|++++|...|..|++++|+.+.+|...|.....+
T Consensus       225 ~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~  277 (336)
T 1p5q_A          225 L---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  277 (336)
T ss_dssp             H---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             h---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            1   3456789999999999999999999999999999999999998888777665

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.16  E-value=0.00065  Score=48.63  Aligned_cols=68  Identities=9%  Similarity=-0.103  Sum_probs=58.1

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      ...|.-+.-.|..+.+.|++++|-+.|..|+.++|+.+.+|..-|..+..+-.             -..|+.+|-+|+..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~-------------~~~A~~~~~~al~~   71 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK-------------FAECVQFCEKAVEV   71 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh-------------HHHHHHHHHHHHHh
Confidence            45677778889999999999999999999999999999999999988776631             35688999999876


Q ss_pred             C
Q psy5931         157 Q  157 (173)
Q Consensus       157 ~  157 (173)
                      .
T Consensus        72 ~   72 (127)
T 4gcn_A           72 G   72 (127)
T ss_dssp             H
T ss_pred             C
Confidence            4

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.14  E-value=0.001  Score=53.79  Aligned_cols=97  Identities=12%  Similarity=0.113  Sum_probs=75.1

Q ss_pred             HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931          39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA  118 (173)
Q Consensus        39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~  118 (173)
                      .+.+.+.+++..      +++.++++..+..--   ..+..++++...|..+.++|++++|.+.|..|++++|+.+++|.
T Consensus         6 ~~~~~g~~~~~~------g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   76 (281)
T 2c2l_A            6 ELKEQGNRLFVG------RKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF   76 (281)
T ss_dssp             HHHHHHHHHHHT------TCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             HHHHHHHHHHHc------CCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            456677777774      456666666654322   13456899999999999999999999999999999999999999


Q ss_pred             HHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931         119 LWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       119 ~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .-|..+..+-.             -..|+..|-+|....
T Consensus        77 ~lg~~~~~~g~-------------~~~A~~~~~~al~l~  102 (281)
T 2c2l_A           77 FLGQCQLEMES-------------YDEAIANLQRAYSLA  102 (281)
T ss_dssp             HHHHHHHHTTC-------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC-------------HHHHHHHHHHHHHhC
Confidence            99988876631             356888888887764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.14  E-value=0.001  Score=47.28  Aligned_cols=76  Identities=22%  Similarity=0.172  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-C
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-E  159 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~  159 (173)
                      +-+..+|..+.+.|++++|...|..|++++|+.+.+|..-|..+..+-  +           -..|+.+|-+|+..+. +
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--~-----------~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE--K-----------DGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--C-----------HHHHHHHHHHHHHhCCCC
Confidence            346778999999999999999999999999999999999999887653  1           3569999999998853 2


Q ss_pred             chhhhhHHHH
Q psy5931         160 SMSRKYLAKV  169 (173)
Q Consensus       160 ~k~Rk~laRi  169 (173)
                      ..++-.++.+
T Consensus        85 ~~~~~~la~~   94 (121)
T 1hxi_A           85 IAVHAALAVS   94 (121)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3344444444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.12  E-value=0.0056  Score=52.21  Aligned_cols=117  Identities=8%  Similarity=-0.012  Sum_probs=85.4

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC-CCCc----------HH-HHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhc
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSVP----------IV-DCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHT   69 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~----------v~-daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~t   69 (173)
                      +...|....+.|-++-++..+.+...+ |..+          .. +-..-....+.||+.+      +++.++++.++..
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~------g~~~~A~~~~~~a  299 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM------SDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc------cCHHHHHHHHHHH
Confidence            356788888999999999998886541 1100          11 1112234457788875      4577777766654


Q ss_pred             cccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          70 NLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        70 nl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      --   ..+..++.+..+|..+..+|++++|.+.|..|++++|+.+.+|...+.....+
T Consensus       300 l~---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          300 LE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             HT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HH---hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            33   23567899999999999999999999999999999999999988777766554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.12  E-value=0.0022  Score=48.53  Aligned_cols=121  Identities=13%  Similarity=0.069  Sum_probs=81.0

Q ss_pred             ChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccC-----CCchhhHHHHHHHHH
Q psy5931          14 LTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKY-----LTKEMTAEFYALKGM   88 (173)
Q Consensus        14 l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~-----F~~~qkaE~~~LKG~   88 (173)
                      +.+-++..+.++.+.......++   +...+.||+.+      +++.++++.++..--.+     -.++..+..+...|.
T Consensus        23 ~~~~al~~~~~~~~~~~~~~~~~---~~~l~~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~   93 (283)
T 3edt_B           23 LCKQALEDLEKTSGHDHPDVATM---LNILALVYRDQ------NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV   93 (283)
T ss_dssp             HHHHHHHHHHHHHCSSSHHHHHH---HHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHH---HHHHHHHHHHc------ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            45567777777765332223333   34567788774      34444444444322110     235678899999999


Q ss_pred             HHHHhCCchHHHHHHHHHHcc--------chhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          89 LLAQIGRSAEANKAFSAAVQM--------HDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        89 fl~~Lg~~deA~~~F~~Avql--------~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      ++..+|++++|...|..|+.+        +|..+.+|...|..+..+-.             -..|+.+|-+|+..
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~al~~  156 (283)
T 3edt_B           94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-------------AEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-------------HHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHH
Confidence            999999999999999999999        58888999999888765531             24466666666654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.11  E-value=0.0027  Score=43.37  Aligned_cols=80  Identities=10%  Similarity=-0.046  Sum_probs=62.4

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +..++.+...|..+.++|++++|...|..|+.++|+.+.+|..-|..+..+-.             -..|+.+|-+|+..
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~al~l   70 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-------------TDDAIDTYAQGIEV   70 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhh
Confidence            45678899999999999999999999999999999999999999988776631             35688888888865


Q ss_pred             C---CCchhhhhHHHH
Q psy5931         157 Q---KESMSRKYLAKV  169 (173)
Q Consensus       157 ~---~~~k~Rk~laRi  169 (173)
                      .   ++....+.+..+
T Consensus        71 ~~~~~~~~~~~~l~~~   86 (100)
T 3ma5_A           71 AREEGTQKDLSELQDA   86 (100)
T ss_dssp             HHHHSCHHHHHHHHHH
T ss_pred             hhcCCchhHHHHHHHH
Confidence            3   333444444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.10  E-value=0.00036  Score=45.92  Aligned_cols=80  Identities=21%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +..++.+...|..+.+.|++++|...|..++.++|..+.+|...|..+..+-  +           -..|+.+|-+++..
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~--~-----------~~~A~~~~~~a~~~   69 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLE--R-----------YEEAVDCYNYVINV   69 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc--C-----------HHHHHHHHHHHHHh
Confidence            3445677889999999999999999999999999999999999888876553  1           35688888888877


Q ss_pred             CCC---chhhhhHHHH
Q psy5931         157 QKE---SMSRKYLAKV  169 (173)
Q Consensus       157 ~~~---~k~Rk~laRi  169 (173)
                      ..+   ..+...++.+
T Consensus        70 ~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A           70 IEDEYNKDVWAAKADA   85 (112)
T ss_dssp             SCCTTCHHHHHHHHHH
T ss_pred             CcccchHHHHHHHHHH
Confidence            433   3444444444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.10  E-value=0.002  Score=54.27  Aligned_cols=111  Identities=10%  Similarity=-0.013  Sum_probs=76.4

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ...|.+....|-++-++..+.+...+.. . .+++.   ..+.+|...      +++.++++.++..--.   .+..++.
T Consensus       247 ~~~g~~~~~~~~~~~A~~~~~~~~~~~~-~-~~~~~---~l~~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~~  312 (537)
T 3fp2_A          247 CYTGIFHFLKNNLLDAQVLLQESINLHP-T-PNSYI---FLALTLADK------ENSQEFFKFFQKAVDL---NPEYPPT  312 (537)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-C-HHHHH---HHHHHTCCS------SCCHHHHHHHHHHHHH---CTTCHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhcCC-C-chHHH---HHHHHHHHh------cCHHHHHHHHHHHhcc---CCCCHHH
Confidence            3456777778888888888888766421 1 33333   346666653      3455566555543221   2345677


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      +...|.++.++|++++|.+.|..++.++|..+.+|...|..+...
T Consensus       313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  357 (537)
T 3fp2_A          313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ  357 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            888888888888888898888888888888888888888777655

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.10  E-value=0.0068  Score=48.89  Aligned_cols=27  Identities=11%  Similarity=0.089  Sum_probs=18.8

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCC
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIP   29 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp   29 (173)
                      +.+|.+-.++|-++-+...+.+.-.++
T Consensus       103 ~~~~~~~~~~~~~~~A~~~~~~al~~~  129 (308)
T 2ond_A          103 FAYADYEESRMKYEKVHSIYNRLLAIE  129 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcc
Confidence            356666677777777777777776654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.09  E-value=0.0026  Score=49.55  Aligned_cols=84  Identities=15%  Similarity=0.126  Sum_probs=56.8

Q ss_pred             hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCC
Q psy5931          57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGS  136 (173)
Q Consensus        57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~  136 (173)
                      +++.++++.++..--.   .+...+.+...|.++.++|++++|.+.|..+++++|+.+.+|..-|..+...-  +     
T Consensus       152 ~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----  221 (327)
T 3cv0_A          152 NEYRECRTLLHAALEM---NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN--R-----  221 (327)
T ss_dssp             HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--C-----
T ss_pred             ccHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--C-----
Confidence            4455666555543221   12356788888888888888888888888888888888888887777766542  1     


Q ss_pred             CchhhhHHHHHHHHHHHchh
Q psy5931         137 APNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus       137 ~~~~~~~~~Ai~CyLqA~~~  156 (173)
                            -..|+.+|-++...
T Consensus       222 ------~~~A~~~~~~a~~~  235 (327)
T 3cv0_A          222 ------PQEALDAYNRALDI  235 (327)
T ss_dssp             ------HHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHc
Confidence                  23456666666554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.09  E-value=0.0033  Score=54.77  Aligned_cols=116  Identities=9%  Similarity=0.032  Sum_probs=81.7

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcC-CCCCc---------HHHH-HHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccc
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYT-IPSVP---------IVDC-FEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNL   71 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~-lp~i~---------v~da-F~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl   71 (173)
                      ...|.+..+.|-++-|+..+.+... .|+-+         +.+. ..-....+.||+.+      .++.++++.++..--
T Consensus       272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~------g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL------REYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHh
Confidence            4578888999999999999998655 34432         0000 11223457788875      467777776665433


Q ss_pred             cCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          72 KYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        72 ~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                         ..+..++.+..+|..+..+|++++|...|..|++++|+.+.+|..-|.....+
T Consensus       346 ---~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~  398 (457)
T 1kt0_A          346 ---LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA  398 (457)
T ss_dssp             ---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred             ---cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence               13456888999999999999999999999999999999998888887766544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.08  E-value=0.0059  Score=49.77  Aligned_cols=113  Identities=13%  Similarity=0.044  Sum_probs=74.5

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ..|.+..+.|-++-++..+.++..+ |. .   ...   ..+.++..+..  +.+++.+++.+++..--.   .+..+.+
T Consensus       135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~-~---~~~---~l~~a~~~l~~--~~~~~~eA~~~~~~~l~~---~p~~~~~  202 (291)
T 3mkr_A          135 MTVQILLKLDRLDLARKELKKMQDQDED-A---TLT---QLATAWVSLAA--GGEKLQDAYYIFQEMADK---CSPTLLL  202 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-C---HHH---HHHHHHHHHHH--CTTHHHHHHHHHHHHHHH---SCCCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcC-c---HHH---HHHHHHHHHHh--CchHHHHHHHHHHHHHHh---CCCcHHH
Confidence            4455556666666666666665432 21 1   000   11122222111  124567777766654332   2346889


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF  128 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f  128 (173)
                      +...|..+.++|++++|...|..|+.++|+.+.+|..-|..+..+.
T Consensus       203 ~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG  248 (291)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999998877754

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.07  E-value=0.0019  Score=50.25  Aligned_cols=87  Identities=16%  Similarity=0.088  Sum_probs=66.7

Q ss_pred             hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCC
Q psy5931          57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGS  136 (173)
Q Consensus        57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~  136 (173)
                      +++.++++.++..--   ..+..++.+...|.++.+.|++++|.+.|..+++++|..+.+|...|..+..+-  +     
T Consensus       186 ~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g--~-----  255 (327)
T 3cv0_A          186 NNYDSAAANLRRAVE---LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS--Q-----  255 (327)
T ss_dssp             TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--C-----
T ss_pred             ccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc--c-----
Confidence            446666666654322   124557899999999999999999999999999999999999999988876652  1     


Q ss_pred             CchhhhHHHHHHHHHHHchhCCC
Q psy5931         137 APNMVLGVFAVTCFMHACRHQKE  159 (173)
Q Consensus       137 ~~~~~~~~~Ai~CyLqA~~~~~~  159 (173)
                            -..|+.+|-+++....+
T Consensus       256 ------~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          256 ------YDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             ------HHHHHHHHHHHHHHHTT
T ss_pred             ------HHHHHHHHHHHHHhCCc
Confidence                  35678888888776443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.07  E-value=0.0073  Score=40.39  Aligned_cols=113  Identities=14%  Similarity=0.094  Sum_probs=78.5

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhcccc----CCCc
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLK----YLTK   76 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~----~F~~   76 (173)
                      ...+|.+....|-++.++..+.+...+ |.-  .++   ....+.||+.+      +++.++++.++..--.    --..
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~---~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~   75 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDPTN--MTY---ITNQAAVYFEK------GDYNKCRELCEKAIEVGRENREDY   75 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH---HHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHH---HHHHHHHHHHh------ccHHHHHHHHHHHHhhccccchhH
Confidence            456788999999999999999997654 322  222   34457788775      3455555544432110    0112


Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEA  126 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~  126 (173)
                      ...++.+...|..+.++|++++|.+.|..++.+.|+ +..+..-+.....
T Consensus        76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~  124 (131)
T 1elr_A           76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence            233889999999999999999999999999999985 7777666655443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.04  E-value=0.0091  Score=44.08  Aligned_cols=141  Identities=12%  Similarity=0.074  Sum_probs=97.5

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ....|.+....|-++-++..+.+...+ |+-  .++   ....+.+|++.      +++.++++.++..--..   + .+
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--~~a---~~~la~~~~~~------g~~~~A~~~~~~a~~~~---p-~~   73 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSR--GDV---KLAKADCLLET------KQFELAQELLATIPLEY---Q-DN   73 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS--HHH---HHHHHHHHHHT------TCHHHHHHHHTTCCGGG---C-CH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHH---HHHHHHHHHHC------CCHHHHHHHHHHhhhcc---C-Ch
Confidence            356677888888899999988886432 221  122   34457788774      57888888888763321   1 34


Q ss_pred             HHHHHHHHH-HHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC
Q psy5931          81 EFYALKGML-LAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE  159 (173)
Q Consensus        81 E~~~LKG~f-l~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~  159 (173)
                      +...+.|.+ +...++.++|-+.|..|+.++|+.+.+|...|..+...-.             -..|+.+|-++++...+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~~l~~~p~  140 (176)
T 2r5s_A           74 SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR-------------DEEALELLWNILKVNLG  140 (176)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc-------------HHHHHHHHHHHHHhCcc
Confidence            566666654 3344455678999999999999999999999998876531             35688888888887532


Q ss_pred             ---chhhhhHHHHh
Q psy5931         160 ---SMSRKYLAKVD  170 (173)
Q Consensus       160 ---~k~Rk~laRiL  170 (173)
                         ..++..++.++
T Consensus       141 ~~~~~a~~~l~~~~  154 (176)
T 2r5s_A          141 AQDGEVKKTFMDIL  154 (176)
T ss_dssp             TTTTHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHH
Confidence               34677777665

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.01  E-value=0.0078  Score=46.40  Aligned_cols=134  Identities=11%  Similarity=0.019  Sum_probs=91.4

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC------CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccC--
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI------PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKY--   73 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l------p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~--   73 (173)
                      ...+|.+....|-++-++..+.+...+      ++-+  +...-....+.||..+      +++.++++.++..--.+  
T Consensus        72 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           72 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP--AVAATLNNLAVLYGKR------GKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHc------CcHHHHHHHHHHHHHHHHH
Confidence            356788888889999898888886544      2211  1122233446677764      34444544444321111  


Q ss_pred             ---CCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc--------chhhHHHHHHHHHhHHhhcCCCCCCCCCchhhh
Q psy5931          74 ---LTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM--------HDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVL  142 (173)
Q Consensus        74 ---F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql--------~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~  142 (173)
                         -.++..+..+...|.++..+|++++|...|..++.+        ++..+.+|...|..+..+-.             
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------  210 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-------------  210 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-------------
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-------------
Confidence               234678899999999999999999999999999999        88888999999988877642             


Q ss_pred             HHHHHHHHHHHchh
Q psy5931         143 GVFAVTCFMHACRH  156 (173)
Q Consensus       143 ~~~Ai~CyLqA~~~  156 (173)
                      -..|+.+|-++...
T Consensus       211 ~~~A~~~~~~al~~  224 (311)
T 3nf1_A          211 FKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            23466666666643

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.99  E-value=0.0039  Score=50.05  Aligned_cols=137  Identities=8%  Similarity=-0.057  Sum_probs=90.2

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCc-HHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchhh
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVP-IVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEMT   79 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~-v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~qk   79 (173)
                      +.+|.+....|-++-++..+.+...+ |..+ ......-....+.+|+.+..... ..-+.+++++....+    .+...
T Consensus       191 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~  266 (406)
T 3sf4_A          191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK----DRAVE  266 (406)
T ss_dssp             HHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----CHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc----CchHH
Confidence            46778888888888888888875432 1111 11222234445677776521110 111555555555443    35667


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh------HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHH
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM------VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHA  153 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~------~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA  153 (173)
                      +..+...|.++.++|++++|.+.|..|+.+.+..      +.+|...|..+..+-.             -..|+.+|-+|
T Consensus       267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~a  333 (406)
T 3sf4_A          267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN-------------HDQAMHFAEKH  333 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHH
Confidence            8999999999999999999999999999986654      6778777877766531             24577777776


Q ss_pred             chh
Q psy5931         154 CRH  156 (173)
Q Consensus       154 ~~~  156 (173)
                      ...
T Consensus       334 l~~  336 (406)
T 3sf4_A          334 LEI  336 (406)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.95  E-value=0.00081  Score=52.76  Aligned_cols=81  Identities=16%  Similarity=0.055  Sum_probs=64.2

Q ss_pred             chhhHHHHHHHHHHHHHhCCc----------hHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHH
Q psy5931          76 KEMTAEFYALKGMLLAQIGRS----------AEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVF  145 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~----------deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~  145 (173)
                      .+..++.+...|..+..+|++          ++|-..|..|+.++|+.+.+|...|.-+.++-.-.|  .......--..
T Consensus        32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P--~~~~a~g~~~e  109 (158)
T 1zu2_A           32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTP--DETEAKHNFDL  109 (158)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCc--chhhhhccHHH
Confidence            566889999999999999886          599999999999999999999999999886532222  11112234567


Q ss_pred             HHHHHHHHchhCC
Q psy5931         146 AVTCFMHACRHQK  158 (173)
Q Consensus       146 Ai~CyLqA~~~~~  158 (173)
                      |+.||-+|+..+.
T Consensus       110 A~~~~~kAl~l~P  122 (158)
T 1zu2_A          110 ATQFFQQAVDEQP  122 (158)
T ss_dssp             HHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999999853

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.94  E-value=0.00073  Score=53.01  Aligned_cols=65  Identities=12%  Similarity=0.021  Sum_probs=51.1

Q ss_pred             HHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          90 LAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        90 l~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ..+++++++|-+.|..|+++.|+.+.+|..||.-+-.+-.-++.   ...+.....|+.||-+|++++
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g---~~al~~~~eAi~~le~AL~ld   76 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSI---SDAKQMIQEAITKFEEALLID   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCH---HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchh---hhhHhHHHHHHHHHHHHHHhC
Confidence            35677889999999999999999999999999987766321110   023445679999999999994

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.94  E-value=0.01  Score=48.32  Aligned_cols=98  Identities=14%  Similarity=0.178  Sum_probs=66.8

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCC---CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTI---PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~l---p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      .+|..-...|-.+.++..|.++...   |+-+  ++   .-..+.++.+      .+++.++++.++.        +...
T Consensus        70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~--~~---~~~la~~~~~------~g~~~~Al~~l~~--------~~~~  130 (291)
T 3mkr_A           70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNT--TF---LLMAASIYFY------DQNPDAALRTLHQ--------GDSL  130 (291)
T ss_dssp             HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH--HH---HHHHHHHHHH------TTCHHHHHHHHTT--------CCSH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH--HH---HHHHHHHHHH------CCCHHHHHHHHhC--------CCCH
Confidence            3444455555666666666665322   3321  12   1222445554      3567888888876        4667


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH-----HHHHHH
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV-----KAWALW  120 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~-----kaW~~W  120 (173)
                      +.+..+|.++.++|+.|+|.+.|..++.++|...     .+|..+
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l  175 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL  175 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH
Confidence            8999999999999999999999999999998643     667666

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.92  E-value=0.0084  Score=43.77  Aligned_cols=154  Identities=10%  Similarity=-0.016  Sum_probs=98.1

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCC---CCcHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCch
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIP---SVPIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKE   77 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp---~i~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~   77 (173)
                      .+.+|.+....|-++-++..+.+...+-   ..+... ..-....+.+|+.+..... ..-+.+++++.....-   .+.
T Consensus        29 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~  104 (203)
T 3gw4_A           29 RFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAE-HRALHQVGMVERMAGNWDAARRCFLEERELLASLPE---DPL  104 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC---CHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc---cHH
Confidence            3567788888888888888888754411   011111 1223445666666421110 1115666666554331   234


Q ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH------HHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHH
Q psy5931          78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV------KAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFM  151 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~------kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyL  151 (173)
                      ..+..+...|..+..+|++++|...|..|+.+.+...      .++..-|......-  +           -..|+.+|-
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~-----------~~~A~~~~~  171 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK--N-----------LLEAQQHWL  171 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-----------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc--C-----------HHHHHHHHH
Confidence            7788999999999999999999999999998765432      22334444333331  1           356899999


Q ss_pred             HHchhCCCchhhhhHHHHhhc
Q psy5931         152 HACRHQKESMSRKYLAKVDYI  172 (173)
Q Consensus       152 qA~~~~~~~k~Rk~laRiLWL  172 (173)
                      +|.........+..++++++.
T Consensus       172 ~al~~~~~~~~~~~~~~~~~~  192 (203)
T 3gw4_A          172 RARDIFAELEDSEAVNELMTR  192 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHhc
Confidence            999887777778888888753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.90  E-value=0.0064  Score=48.50  Aligned_cols=113  Identities=12%  Similarity=0.042  Sum_probs=85.8

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|.+..+.|-++-++..+.+...+ |..  .++   ....+.||...      +++.++++.++..--   ..+...+
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~---~~~l~~~~~~~------g~~~~A~~~~~~al~---~~~~~~~  286 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALSVRPND--YLL---WNKLGATLANG------NQSEEAVAAYRRALE---LQPGYIR  286 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH---HHHHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHH---HHHHHHHHHHc------CCHHHHHHHHHHHHH---hCCCcHH
Confidence            56788889999999999999986653 322  223   33457778774      456666666554321   1345678


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhh-----------HHHHHHHHHhHHhhcC
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVM-----------VKAWALWGDYMEAQFT  129 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~-----------~kaW~~WG~~~d~~f~  129 (173)
                      .+...|.++.++|++++|...|..|+.+.|+.           +.+|..-|..+..+-.
T Consensus       287 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  345 (368)
T 1fch_A          287 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ  345 (368)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999988           8899988888887753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.87  E-value=0.0068  Score=48.92  Aligned_cols=132  Identities=8%  Similarity=-0.032  Sum_probs=88.4

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      .+.++.+.+++|-.+-+...+.+.-.++... .++++.   .+...+..     .+++.++..+.+..-- .  .+..++
T Consensus       137 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~---~a~~~~~~-----~~~~~~A~~~~~~al~-~--~p~~~~  204 (308)
T 2ond_A          137 YIQYMKFARRAEGIKSGRMIFKKAREDARTR-HHVYVT---AALMEYYC-----SKDKSVAFKIFELGLK-K--YGDIPE  204 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC-THHHHH---HHHHHHHT-----SCCHHHHHHHHHHHHH-H--HTTCHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHH---HHHHHHHH-----cCCHHHHHHHHHHHHH-h--CCCcHH
Confidence            3567888888888899999999977764322 344432   12222111     1223333333332211 1  134579


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHcc---ch-hhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQM---HD-VMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql---~~-~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ++...|.++.++|+.++|-..|..|+..   .| +....|..|+.+..+...             ...|...|-+|....
T Consensus       205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~-------------~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-------------LASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC-------------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHc
Confidence            9999999999999999999999999995   55 478999999999877631             245677788887764


Q ss_pred             C
Q psy5931         158 K  158 (173)
Q Consensus       158 ~  158 (173)
                      .
T Consensus       272 p  272 (308)
T 2ond_A          272 R  272 (308)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.86  E-value=0.016  Score=49.72  Aligned_cols=127  Identities=12%  Similarity=-0.005  Sum_probs=78.4

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY   83 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~   83 (173)
                      .++.+..+.|-++-++..+.++..+.. .-.+++   ...+.+|.+.      +++.+++++++..-- .  .+...+.+
T Consensus       378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~---~~l~~~~~~~------g~~~~A~~~~~~~~~-~--~~~~~~~~  444 (597)
T 2xpi_A          378 AVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAW---IGFAHSFAIE------GEHDQAISAYTTAAR-L--FQGTHLPY  444 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH---HHHHHHHHHH------TCHHHHHHHHHHHHH-T--TTTCSHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHH---HHHHHHHHHc------CCHHHHHHHHHHHHH-h--CccchHHH
Confidence            455666666666666666666544211 111122   2335555553      456666666654321 1  22346778


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      ...|..+.+.|+.++|.+.|..++.++|..+.+|...|..+.+.-.             ...|+..|-++...
T Consensus       445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD-------------MQTAINHFQNALLL  504 (597)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-------------HHHHHHHHHHHHHh
Confidence            8888888888888888888888888888888888888877765421             34466666665544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.85  E-value=0.014  Score=47.04  Aligned_cols=141  Identities=9%  Similarity=-0.039  Sum_probs=89.3

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ...|..+...|-++-++..+.+...+ |+-  .++   ....+.++++.      +++.++++.++..--..  | ....
T Consensus       121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--~~a---~~~la~~~~~~------g~~~~A~~~l~~~~~~~--p-~~~~  186 (287)
T 3qou_A          121 AQQAMQLMQESNYTDALPLLXDAWQLSNQN--GEI---GLLLAETLIAL------NRSEDAEAVLXTIPLQD--Q-DTRY  186 (287)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHTTSC--HHH---HHHHHHHHHHT------TCHHHHHHHHTTSCGGG--C-SHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhCCcc--hhH---HHHHHHHHHHC------CCHHHHHHHHHhCchhh--c-chHH
Confidence            45677778888888888888886553 322  233   33446777774      56777777777653321  1 2233


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC--
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE--  159 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~--  159 (173)
                      .....|..+.+.|+.++|-..|..|+..+|..+.+|..-|..+...-.             -..|+.+|.++++.+.+  
T Consensus       187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~-------------~~~A~~~l~~~l~~~p~~~  253 (287)
T 3qou_A          187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR-------------NEEALELLFGHLRXDLTAA  253 (287)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTGG
T ss_pred             HHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc-------------HHHHHHHHHHHHhcccccc
Confidence            444455557777777777777777777777777777777776655531             34577777777776422  


Q ss_pred             -chhhhhHHHHh
Q psy5931         160 -SMSRKYLAKVD  170 (173)
Q Consensus       160 -~k~Rk~laRiL  170 (173)
                       ..+|..++.++
T Consensus       254 ~~~a~~~l~~~~  265 (287)
T 3qou_A          254 DGQTRXTFQEIL  265 (287)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             cchHHHHHHHHH
Confidence             45666666554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.84  E-value=0.0097  Score=48.89  Aligned_cols=133  Identities=11%  Similarity=0.024  Sum_probs=92.5

Q ss_pred             HHHHHHhCCChHHHHHHHHhhcCC----CCCc-HHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCCchh
Q psy5931           5 FGKIARKHHLTSVCLDSLFRLYTI----PSVP-IVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTKEM   78 (173)
Q Consensus         5 fa~iARkh~l~~vc~~~L~ki~~l----p~i~-v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~~q   78 (173)
                      .|.+....|-++-++..+.+...+    |+-+ ..+++   ...+.||+.+.... .-.-+..++++....+-   .++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~---~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~  182 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFF---FKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---YNIR  182 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHH---HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST---THHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc---chHH
Confidence            577888899999999999998775    3211 33333   34466777752211 11126677777666532   2567


Q ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH------HHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHH
Q psy5931          79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV------KAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMH  152 (173)
Q Consensus        79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~------kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLq  152 (173)
                      .+..+...|.++..+|++++|...|..|+.+.+..+      .+|..-|.....+-.             -..|+.+|-+
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-------------~~~A~~~~~~  249 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-------------YEDAIPYFKR  249 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-------------HHHHHHHHHH
Confidence            889999999999999999999999999999866443      577777776655531             2457777777


Q ss_pred             Hchh
Q psy5931         153 ACRH  156 (173)
Q Consensus       153 A~~~  156 (173)
                      |...
T Consensus       250 al~~  253 (383)
T 3ulq_A          250 AIAV  253 (383)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.0031  Score=52.50  Aligned_cols=109  Identities=9%  Similarity=0.049  Sum_probs=75.1

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|.+..+.|-++-++..+.+...+ |.   .+++   ...+.||....      ++.++++.++..--   ..+...+
T Consensus       241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~---~~l~~~~~~~~------~~~~A~~~~~~~~~---~~~~~~~  305 (514)
T 2gw1_A          241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR---VNSY---IYMALIMADRN------DSTEYYNYFDKALK---LDSNNSS  305 (514)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHCCC---HHHH---HHHHHHHHTSS------CCTTGGGHHHHHHT---TCTTCTH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcc---HHHH---HHHHHHHHHCC------CHHHHHHHHHHHhh---cCcCCHH
Confidence            45778888899999999999887654 33   3443   33477777652      23333333332211   1233456


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHh
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEA  126 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~  126 (173)
                      .+...|.++.++|++++|...|..++.++|..+.+|..-|..+..
T Consensus       306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  350 (514)
T 2gw1_A          306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR  350 (514)
T ss_dssp             HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Confidence            888899999999999999999999999999888888877766544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.78  E-value=0.0077  Score=49.07  Aligned_cols=150  Identities=7%  Similarity=-0.041  Sum_probs=99.6

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCC-CC-cHHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCCchhh
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIP-SV-PIVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTKEMT   79 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp-~i-~v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~~qk   79 (173)
                      ..+|.+....|-++-++..+.+...+- .. .......-....+.+|+.+.... ...-+.+++++.....    .+...
T Consensus       227 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~  302 (411)
T 4a1s_A          227 GNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG----EREVE  302 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT----CHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC----CHHHH
Confidence            457888888898898888888764421 10 00111112344566777642110 0111555555555432    34567


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh------HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHH
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM------VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHA  153 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~------~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA  153 (173)
                      ++.+...|.++..+|++++|.+.|..|+.+.+..      +.++...|..+..+-.             -..|+.+|-+|
T Consensus       303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~a  369 (411)
T 4a1s_A          303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG-------------HERALKYAEQH  369 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc-------------HHHHHHHHHHH
Confidence            8999999999999999999999999999997654      4577778877766531             35688899999


Q ss_pred             chhCCCchhhhhHHHH
Q psy5931         154 CRHQKESMSRKYLAKV  169 (173)
Q Consensus       154 ~~~~~~~k~Rk~laRi  169 (173)
                      .........+...+|+
T Consensus       370 l~~~~~~~~~~~~~~~  385 (411)
T 4a1s_A          370 LQLAXXXXXXXXXXXX  385 (411)
T ss_dssp             HHHCCHHHHHHHHHHH
T ss_pred             HHHHhhcccchhhhhh
Confidence            8887766666666554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.77  E-value=0.0062  Score=46.81  Aligned_cols=104  Identities=11%  Similarity=0.018  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccc-cCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc-----
Q psy5931          36 CFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNL-KYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM-----  109 (173)
Q Consensus        36 aF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl-~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql-----  109 (173)
                      .+..+...+.+++..      +++.++++.++..-- +-=.++..+..+...|.++...|++++|.+.|..|+.+     
T Consensus         4 ~~~~l~~~g~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~   77 (338)
T 3ro2_A            4 SCLELALEGERLCKS------GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG   77 (338)
T ss_dssp             HHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHh------ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc
Confidence            455677778888875      345555555443211 11134556899999999999999999999999999998     


Q ss_pred             -chhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931         110 -HDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus       110 -~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                       .+..+.+|...|.....+-.             -..|+.+|-+|.....
T Consensus        78 ~~~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al~~~~  114 (338)
T 3ro2_A           78 DQLGEAKASGNLGNTLKVLGN-------------FDEAIVCCQRHLDISR  114 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHccC-------------HHHHHHHHHHHHHHHH
Confidence             56677888888887765531             3457778877776543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.76  E-value=0.001  Score=56.10  Aligned_cols=97  Identities=9%  Similarity=0.036  Sum_probs=70.3

Q ss_pred             HhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHH
Q psy5931          23 FRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKA  102 (173)
Q Consensus        23 ~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~  102 (173)
                      +.+.+++.-+-.+-...+.+.+.+++...      ++.++++..+..--   ..+..++.+...|..+.++|++++|-+.
T Consensus        11 ~~~~~~~~~~~~~~a~~~~~~g~~~~~~g------~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~   81 (537)
T 3fp2_A           11 AQLKGLSPSQRQAYAVQLKNRGNHFFTAK------NFNEAIKYYQYAIE---LDPNEPVFYSNISACYISTGDLEKVIEF   81 (537)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHHHHHHHTT------CCC-CHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HhhcCCCcchhHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            33444433333345677888999999853      33344444333221   1245679999999999999999999999


Q ss_pred             HHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931         103 FSAAVQMHDVMVKAWALWGDYMEAQF  128 (173)
Q Consensus       103 F~~Avql~~~~~kaW~~WG~~~d~~f  128 (173)
                      |..++.++|+.+.+|..-|..+..+-
T Consensus        82 ~~~al~~~p~~~~~~~~la~~~~~~g  107 (537)
T 3fp2_A           82 TTKALEIKPDHSKALLRRASANESLG  107 (537)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHcC
Confidence            99999999999999999998877663

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.74  E-value=0.0027  Score=53.03  Aligned_cols=76  Identities=16%  Similarity=-0.023  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-C
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-E  159 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~  159 (173)
                      ..+...|..+.++|++++|-..|..|+.++|+.+++|...|..+..+-.             -..|+.+|-+|..... +
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~-------------~~~A~~~l~~al~l~p~~  297 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ-------------MDSARDDFRKAQKYAPDD  297 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC-------------HHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCCCC
Confidence            4889999999999999999999999999999999999999988766531             3568888888887642 3


Q ss_pred             chhhhhHHHH
Q psy5931         160 SMSRKYLAKV  169 (173)
Q Consensus       160 ~k~Rk~laRi  169 (173)
                      ..++..|+++
T Consensus       298 ~~a~~~L~~l  307 (338)
T 2if4_A          298 KAIRRELRAL  307 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            4445555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.72  E-value=0.003  Score=55.63  Aligned_cols=97  Identities=7%  Similarity=0.028  Sum_probs=71.6

Q ss_pred             hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCC
Q psy5931          57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGS  136 (173)
Q Consensus        57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~  136 (173)
                      +++.++++..+..--   ..+..++.+...|..+.++|++++|.+.|..|++++|+.+++|..-|..+..+-.       
T Consensus        20 g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~-------   89 (477)
T 1wao_1           20 KDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK-------   89 (477)
T ss_dssp             TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC-------
T ss_pred             CCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------
Confidence            345555554443221   1344589999999999999999999999999999999999999999988776631       


Q ss_pred             CchhhhHHHHHHHHHHHchhCC-CchhhhhHHHH
Q psy5931         137 APNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKV  169 (173)
Q Consensus       137 ~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRi  169 (173)
                            -..|+.+|-+|..... +..++..++++
T Consensus        90 ------~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           90 ------FRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             ------HHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                  3568888888888743 33445555544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.71  E-value=0.026  Score=46.47  Aligned_cols=138  Identities=14%  Similarity=0.067  Sum_probs=91.5

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC----CCCcHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCch
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI----PSVPIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKE   77 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l----p~i~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~   77 (173)
                      ..+|.+-...|-++.++..+.+...+    +..+. ....-...-+.||..+..... ..-+..++++....+-    +.
T Consensus       145 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~----~~  219 (378)
T 3q15_A          145 FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI-RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN----DR  219 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----HH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC----HH
Confidence            45777888888888888888774332    11111 111122234556655421100 1115666666655432    45


Q ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHHHHc-----cchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHH
Q psy5931          78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQ-----MHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMH  152 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avq-----l~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLq  152 (173)
                      ..+..+..-|..+..+|++++|...|..|+.     -+|..+.++...|....++-.             -..|+.+|-+
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~  286 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ-------------TQKAFQFIEE  286 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC-------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC-------------HHHHHHHHHH
Confidence            7788999999999999999999999999999     788888999988888776632             2457777777


Q ss_pred             HchhCC
Q psy5931         153 ACRHQK  158 (173)
Q Consensus       153 A~~~~~  158 (173)
                      |.....
T Consensus       287 al~~~~  292 (378)
T 3q15_A          287 GLDHIT  292 (378)
T ss_dssp             HHHHCC
T ss_pred             HHHHHH
Confidence            776543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.71  E-value=0.021  Score=39.06  Aligned_cols=139  Identities=8%  Similarity=-0.073  Sum_probs=87.3

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC-CCC-cHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchh
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSV-PIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEM   78 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i-~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~q   78 (173)
                      ...+|.+....|-++.++..+.+...+ |.. .......-....+.+|+.+..... ..-+..++++....+    .++.
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~   87 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK----DRAV   87 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----CHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----CcHH
Confidence            356788888889999999888886443 110 011111223445667776421110 111555666655543    3566


Q ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh------hHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHH
Q psy5931          79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV------MVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMH  152 (173)
Q Consensus        79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~------~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLq  152 (173)
                      .+..+...|.++..+|++++|...|..|+.+.+.      .+.++..-|.....+-  +           -..|+.+|-+
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g--~-----------~~~A~~~~~~  154 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG--N-----------HDQAMHFAEK  154 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C-----------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc--C-----------HHHHHHHHHH
Confidence            7889999999999999999999999999988653      2345555555444432  1           2457777777


Q ss_pred             HchhC
Q psy5931         153 ACRHQ  157 (173)
Q Consensus       153 A~~~~  157 (173)
                      |....
T Consensus       155 a~~~~  159 (164)
T 3ro3_A          155 HLEIS  159 (164)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.70  E-value=0.013  Score=45.10  Aligned_cols=111  Identities=12%  Similarity=-0.009  Sum_probs=78.5

Q ss_pred             HHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHH---HHH
Q psy5931          42 QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK---AWA  118 (173)
Q Consensus        42 Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k---aW~  118 (173)
                      +.+..+++.      +++.++++.++..--.+-..+...+.+...|..+.++|++++|-..|..++..+|+.+.   +|.
T Consensus         9 ~~a~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            9 ATAQQKLQD------GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHH------TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHc------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            446667763      56888888888765555555667788999999999999999999999999999998764   788


Q ss_pred             HHHHhHHhhcC-------CCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931         119 LWGDYMEAQFT-------NPSPPGSAPNMVLGVFAVTCFMHACRHQKES  160 (173)
Q Consensus       119 ~WG~~~d~~f~-------~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~  160 (173)
                      ..|.....+-.       .-+  ....+..-...|+.+|-+++..+.++
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~~l~~~P~~  129 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVD--RSDRDPQQARAAFSDFSKLVRGYPNS  129 (225)
T ss_dssp             HHHHHHHHHHC----------------CCHHHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHhhhhhhhhhhhccc--hhhcCcHHHHHHHHHHHHHHHHCcCC
Confidence            88876654310       000  00012234567899999988875443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.70  E-value=0.012  Score=39.01  Aligned_cols=92  Identities=17%  Similarity=0.140  Sum_probs=64.3

Q ss_pred             HHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931          43 QVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD  122 (173)
Q Consensus        43 q~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~  122 (173)
                      .+.++...      +++.+++++.+..--.   .+...+.+...|..+...|+.++|-+.|..++++.|..+..|...|.
T Consensus         7 l~~~~~~~------~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   77 (136)
T 2fo7_A            7 LGNAYYKQ------GDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN   77 (136)
T ss_dssp             HHHHHHHH------TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHc------CcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            35566653      3456666655543211   12346778888999999999999999999999999999999988887


Q ss_pred             hHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931         123 YMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus       123 ~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      .+...-  +           -..|+..|-++...
T Consensus        78 ~~~~~~--~-----------~~~A~~~~~~~~~~   98 (136)
T 2fo7_A           78 AYYKQG--D-----------YDEAIEYYQKALEL   98 (136)
T ss_dssp             HHHTTT--C-----------HHHHHHHHHHHHHH
T ss_pred             HHHHhc--C-----------HHHHHHHHHHHHHh
Confidence            665432  1           24566666666655

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.64  E-value=0.0082  Score=52.64  Aligned_cols=109  Identities=16%  Similarity=0.005  Sum_probs=80.1

Q ss_pred             HHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHH
Q psy5931          40 IRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWAL  119 (173)
Q Consensus        40 lrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~  119 (173)
                      ....+.+|++.      +++.++++..+..--   ..+..++.+...|..+.++|++++|.+.|..|++++|+.+.+|..
T Consensus        26 ~~~lg~~~~~~------g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   96 (568)
T 2vsy_A           26 WLMLADAELGM------GDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALW   96 (568)
T ss_dssp             HHHHHHHHHHH------TCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHc------CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            34557777774      456677666655432   134568899999999999999999999999999999999999999


Q ss_pred             HHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHHh
Q psy5931         120 WGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKVD  170 (173)
Q Consensus       120 WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRiL  170 (173)
                      -|..+..+-.             -..|+.+|-+|..... +..+...++.++
T Consensus        97 la~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~  135 (568)
T 2vsy_A           97 LGHALEDAGQ-------------AEAAAAAYTRAHQLLPEEPYITAQLLNWR  135 (568)
T ss_dssp             HHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9988766531             3568888888887743 234444555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.63  E-value=0.0029  Score=41.88  Aligned_cols=61  Identities=18%  Similarity=0.037  Sum_probs=52.5

Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHccchhhHH-HHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931          85 LKGMLLAQIGRSAEANKAFSAAVQMHDVMVK-AWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus        85 LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k-aW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      -+|..+.+.|++++|.+.|..+++++|..+. +|...|..+..+-  +           -..|+.+|-+|+..+.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~--~-----------~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG--D-----------WQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT--C-----------HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC--C-----------HHHHHHHHHHHHhcCC
Confidence            4788999999999999999999999999999 9999999877653  1           3568999999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.62  E-value=0.044  Score=44.14  Aligned_cols=116  Identities=15%  Similarity=0.068  Sum_probs=81.1

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ...+|.+....|-++-++..|.++-.+.  | ......+.-.. .+.+..... .-..++.+++.          .+...
T Consensus       154 ~~~la~~~~~~g~~~~A~~~l~~~~~~~--p-~~~~~~~~~~~-~l~~~~~~~~a~~~l~~al~~----------~P~~~  219 (287)
T 3qou_A          154 GLLLAETLIALNRSEDAEAVLXTIPLQD--Q-DTRYQGLVAQI-ELLXQAADTPEIQQLQQQVAE----------NPEDA  219 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHTTSCGGG--C-SHHHHHHHHHH-HHHHHHTSCHHHHHHHHHHHH----------CTTCH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCchhh--c-chHHHHHHHHH-HHHhhcccCccHHHHHHHHhc----------CCccH
Confidence            3567899999999999999999975531  1 22222222222 232221100 01123333332          45667


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhh--HHHHHHHHHhHHhhcCCC
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM--VKAWALWGDYMEAQFTNP  131 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~--~kaW~~WG~~~d~~f~~~  131 (173)
                      +.+...|..+...|++++|-..|..+++.+|+.  +.+|..-|..++.+...+
T Consensus       220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            888999999999999999999999999999998  899999999999886555

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.61  E-value=0.032  Score=44.47  Aligned_cols=133  Identities=9%  Similarity=-0.047  Sum_probs=80.8

Q ss_pred             HHHHHhCCChHHHHHHHHhhcCCCC-CcHHHHHHHHHH-HHHHHhhhhccCChhHHHHHHHHhhhcc---ccCCCchhhH
Q psy5931           6 GKIARKHHLTSVCLDSLFRLYTIPS-VPIVDCFEKIRQ-QVKCYLQMAALDGKNQLQEGLEVIEHTN---LKYLTKEMTA   80 (173)
Q Consensus         6 a~iARkh~l~~vc~~~L~ki~~lp~-i~v~daF~KlrE-q~kc~l~~~~~~~~~el~~gL~vi~~tn---l~~F~~~qka   80 (173)
                      +....++|-++-++..+.++-..+. .+....+..... .+.+|+.      ..++.++++..+..-   ...-.....+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~Ai~~~~~al~~~~~~~~~~~~~  155 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK------KVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT------SSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc------ccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence            4556677888888888888776543 222222222221 2334443      223444444433321   1111223567


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHc-------cchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHH
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQ-------MHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHA  153 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avq-------l~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA  153 (173)
                      ..+..-|.++..+|++++|...|..|+.       ..+..+.++..-|..+..+-.             -..|+..|-+|
T Consensus       156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-------------y~~A~~~~~~a  222 (293)
T 3u3w_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-------------YEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHH
Confidence            7899999999999999999999999994       344555677777777665531             24566677666


Q ss_pred             chhC
Q psy5931         154 CRHQ  157 (173)
Q Consensus       154 ~~~~  157 (173)
                      +...
T Consensus       223 l~~~  226 (293)
T 3u3w_A          223 IEIS  226 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.058  Score=44.70  Aligned_cols=51  Identities=14%  Similarity=0.105  Sum_probs=46.2

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF  128 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f  128 (173)
                      +..++.+...|..+...|++++|.+.|..++.++|. +.+|...|..+...-
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~  284 (514)
T 2gw1_A          234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRN  284 (514)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSS
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCC
Confidence            678899999999999999999999999999999999 999999888776653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.52  E-value=0.029  Score=46.02  Aligned_cols=137  Identities=10%  Similarity=0.025  Sum_probs=89.9

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCc--HHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchh
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVP--IVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEM   78 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~--v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~q   78 (173)
                      ..+|.+-...|-++.++..+.+...+ +..+  ......-+..-+.||..+..... -.-+..++++....+    .++.
T Consensus       147 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~  222 (383)
T 3ulq_A          147 FKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK----QPQL  222 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----CHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC----ChHH
Confidence            46777788888888888888774432 1111  11111223334556665421110 111556666665543    3667


Q ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHHHHc-----cc-hhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHH
Q psy5931          79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQ-----MH-DVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMH  152 (173)
Q Consensus        79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avq-----l~-~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLq  152 (173)
                      .+..+...|.++..+|++++|.+.|..|+.     -+ |..+.++..-|.....+-.             -..|+.+|-+
T Consensus       223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~  289 (383)
T 3ulq_A          223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-------------IDKAHEYHSK  289 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC-------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC-------------HHHHHHHHHH
Confidence            788999999999999999999999999999     45 7788899888888776631             2456777777


Q ss_pred             Hchh
Q psy5931         153 ACRH  156 (173)
Q Consensus       153 A~~~  156 (173)
                      |...
T Consensus       290 al~~  293 (383)
T 3ulq_A          290 GMAY  293 (383)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.49  E-value=0.071  Score=42.68  Aligned_cols=138  Identities=14%  Similarity=0.080  Sum_probs=85.6

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCC-CCC-cHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchhhH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTI-PSV-PIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~l-p~i-~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      +.+.+-+..|-++-++..+.+...+ +.+ ...++-.-...-+.||..+..... -.-+..++++-...+    .....+
T Consensus        42 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g----~~~~~a  117 (292)
T 1qqe_A           42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG----QFRRGA  117 (292)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----CHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHH
Confidence            4455667788888888877765332 000 011222334455677776421100 011445555443321    234457


Q ss_pred             HHHHHHHHHHHHh-CCchHHHHHHHHHHccchhh------HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHH
Q psy5931          81 EFYALKGMLLAQI-GRSAEANKAFSAAVQMHDVM------VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHA  153 (173)
Q Consensus        81 E~~~LKG~fl~~L-g~~deA~~~F~~Avql~~~~------~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA  153 (173)
                      ..+...|.++... |++++|...|..|+.+.|..      +.+|...|..+-.+-  +           -..|+.+|-++
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g--~-----------~~~A~~~~~~a  184 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG--Q-----------YIEASDIYSKL  184 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC--C-----------HHHHHHHHHHH
Confidence            8899999999994 99999999999999998854      567777787776653  1           24577777777


Q ss_pred             chhCC
Q psy5931         154 CRHQK  158 (173)
Q Consensus       154 ~~~~~  158 (173)
                      +....
T Consensus       185 l~~~~  189 (292)
T 1qqe_A          185 IKSSM  189 (292)
T ss_dssp             HHTTS
T ss_pred             HHHHh
Confidence            77643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.48  E-value=0.0071  Score=44.10  Aligned_cols=83  Identities=14%  Similarity=0.061  Sum_probs=62.5

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHh-HHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDY-MEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR  155 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~-~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~  155 (173)
                      +..++.+...|.++...|++++|...|..|++++|+.+.+|...|.. ....-.-           .-..|+.+|-+++.
T Consensus        41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~-----------~~~~A~~~~~~al~  109 (177)
T 2e2e_A           41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH-----------MTAQTRAMIDKALA  109 (177)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC-----------CCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc-----------chHHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999987 3333111           02568888888887


Q ss_pred             hCC-CchhhhhHHHHh
Q psy5931         156 HQK-ESMSRKYLAKVD  170 (173)
Q Consensus       156 ~~~-~~k~Rk~laRiL  170 (173)
                      ... +..+...++++.
T Consensus       110 ~~p~~~~~~~~la~~~  125 (177)
T 2e2e_A          110 LDSNEITALMLLASDA  125 (177)
T ss_dssp             HCTTCHHHHHHHHHHH
T ss_pred             hCCCcHHHHHHHHHHH
Confidence            743 234445555554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.43  E-value=0.0082  Score=41.45  Aligned_cols=94  Identities=7%  Similarity=0.056  Sum_probs=64.1

Q ss_pred             CCChHHHHHHHHhhcCCC--CCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHH
Q psy5931          12 HHLTSVCLDSLFRLYTIP--SVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGML   89 (173)
Q Consensus        12 h~l~~vc~~~L~ki~~lp--~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~f   89 (173)
                      .|-++.++..+.+...+.  .-.-.++   ....+.||+.+      +++.++++.++..--.   .+..++.+...|..
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~---~~~lg~~~~~~------~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~   70 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAEC---YLGLGSTFRTL------GEYRKAEAVLANGVKQ---FPNHQALRVFYAMV   70 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHH---HHHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHH---HHHHHHHHHHc------CCHHHHHHHHHHHHHh---CCCchHHHHHHHHH
Confidence            344556777777776661  0112223   34457888875      5677777777665321   23348899999999


Q ss_pred             HHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931          90 LAQIGRSAEANKAFSAAVQMHDVMVKAW  117 (173)
Q Consensus        90 l~~Lg~~deA~~~F~~Avql~~~~~kaW  117 (173)
                      +.++|++++|...|..++...|+.+...
T Consensus        71 ~~~~g~~~~A~~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           71 LYNLGRYEQGVELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            9999999999999999999988766543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.42  E-value=0.011  Score=40.45  Aligned_cols=65  Identities=11%  Similarity=0.118  Sum_probs=49.5

Q ss_pred             HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh------HHHHHHHHHhHHhh
Q psy5931          59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM------VKAWALWGDYMEAQ  127 (173)
Q Consensus        59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~------~kaW~~WG~~~d~~  127 (173)
                      +.+++++....+    .+...+..+...|.++..+|++++|...|..|+.+.+..      +.++...|..+...
T Consensus        32 ~~~al~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (164)
T 3ro3_A           32 HEQRLLIAKEFG----DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL  102 (164)
T ss_dssp             HHHHHHHHHHHT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            555565555432    356677899999999999999999999999999988764      56676777666554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.38  E-value=0.0089  Score=54.72  Aligned_cols=105  Identities=11%  Similarity=0.019  Sum_probs=78.0

Q ss_pred             HhCCChHHHHHHHHhhc--------CC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931          10 RKHHLTSVCLDSLFRLY--------TI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus        10 Rkh~l~~vc~~~L~ki~--------~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      -..|-++-++..+.+.-        .+ |+-  .++   ....+.+|+++      +++.++++.++..--   ..+..+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~--~~~---~~~~a~~~~~~------g~~~~A~~~~~~al~---~~p~~~  467 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSES--VEL---PLMEVRALLDL------GDVAKATRKLDDLAE---RVGWRW  467 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTC--SHH---HHHHHHHHHHH------TCHHHHHHHHHHHHH---HHCCCH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccc--hhH---HHHHHHHHHhc------CCHHHHHHHHHHHhc---cCcchH
Confidence            34566777888888764        22 321  122   33457888875      456677766655433   245568


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF  128 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f  128 (173)
                      +.+..+|..+.++|++++|.+.|..|++++|+.+.+|..-|..+..+-
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g  515 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAG  515 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999998877664

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.28  E-value=0.055  Score=39.28  Aligned_cols=108  Identities=11%  Similarity=0.011  Sum_probs=67.2

Q ss_pred             CCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHH
Q psy5931          12 HHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLL   90 (173)
Q Consensus        12 h~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl   90 (173)
                      .|-++.+...+..+.+.|.. ..++   ....+.+|+...... ...-+.+++++....+.    ++..+..+...|.++
T Consensus         5 ~g~~~~A~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~l~~~~   76 (203)
T 3gw4_A            5 AHDYALAERQAQALLAHPAT-ASGA---RFMLGYVYAFMDRFDEARASFQALQQQAQKSGD----HTAEHRALHQVGMVE   76 (203)
T ss_dssp             --CHHHHHHHHHHHHTSTTT-HHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhcCChHH-HHHH---HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHH
Confidence            45566666633333344421 2222   334566777642211 11126666776666553    677889999999999


Q ss_pred             HHhCCchHHHHHHHHHHcc------ch-hhHHHHHHHHHhHHhh
Q psy5931          91 AQIGRSAEANKAFSAAVQM------HD-VMVKAWALWGDYMEAQ  127 (173)
Q Consensus        91 ~~Lg~~deA~~~F~~Avql------~~-~~~kaW~~WG~~~d~~  127 (173)
                      ..+|++++|...|..|+.+      ++ ..+.++..-|.....+
T Consensus        77 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~  120 (203)
T 3gw4_A           77 RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF  120 (203)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998      33 3455566666655544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.24  E-value=0.12  Score=41.12  Aligned_cols=121  Identities=12%  Similarity=0.073  Sum_probs=76.6

Q ss_pred             HHHHHHhCCChHHHHHHHHhhcCCC--CCcHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           5 FGKIARKHHLTSVCLDSLFRLYTIP--SVPIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         5 fa~iARkh~l~~vc~~~L~ki~~lp--~i~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      +|.+-...|-++-++..+.+...+.  ..+......-...-+.+|..+..... -.-+..++++.+..+-   .+.....
T Consensus       121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~---~~~~~~~  197 (293)
T 2qfc_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD---NEEFDVK  197 (293)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC---CHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc---cccchHH
Confidence            4555566778888888887765431  11111112223344667766421000 0114555555554332   2333448


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchh------hHHHHHHHHHhHHhhc
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDV------MVKAWALWGDYMEAQF  128 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~------~~kaW~~WG~~~d~~f  128 (173)
                      .+...|..+.++|++++|.+.|..|+.+.+.      .+.++..-|.....+-
T Consensus       198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g  250 (293)
T 2qfc_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999998765      4788888888877764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.20  E-value=0.0055  Score=56.09  Aligned_cols=140  Identities=11%  Similarity=-0.107  Sum_probs=88.7

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ...|.+..+.|-++-++..+.+...+ |+-  .++   ....+.+|+++      +++.++++..+..--   ..+..++
T Consensus       437 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a---~~~lg~~~~~~------g~~~~A~~~~~~al~---l~P~~~~  502 (681)
T 2pzi_A          437 LMEVRALLDLGDVAKATRKLDDLAERVGWR--WRL---VWYRAVAELLT------GDYDSATKHFTEVLD---TFPGELA  502 (681)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--HHH---HHHHHHHHHHH------TCHHHHHHHHHHHHH---HSTTCSH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhccCcch--HHH---HHHHHHHHHHc------CCHHHHHHHHHHHHH---hCCCChH
Confidence            45577777788888888888886543 221  122   23446677764      445555555544321   1233467


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC-c
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE-S  160 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~-~  160 (173)
                      .+...|..+.++|++++ .+.|..|+.++|+.+.+|..-|..+..+-.             -..|+.+|-+|+....+ .
T Consensus       503 ~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~al~l~P~~~  568 (681)
T 2pzi_A          503 PKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD-------------RVGAVRTLDEVPPTSRHFT  568 (681)
T ss_dssp             HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHTSCTTSTTHH
T ss_pred             HHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC-------------HHHHHHHHHhhcccCcccH
Confidence            77788888888888888 888888888888888888877777665531             24577777777766422 3


Q ss_pred             hhhhhHHHHh
Q psy5931         161 MSRKYLAKVD  170 (173)
Q Consensus       161 k~Rk~laRiL  170 (173)
                      .++..++.++
T Consensus       569 ~a~~~~~~~~  578 (681)
T 2pzi_A          569 TARLTSAVTL  578 (681)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            3444444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.20  E-value=0.081  Score=42.66  Aligned_cols=119  Identities=8%  Similarity=0.028  Sum_probs=62.7

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCC-CCC-cHHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTI-PSV-PIVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~l-p~i-~v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      +.+.+-+..|-++-++..+.+...+ +.. ...++-.-+..-+.||..+.... .-.-++.++++....+    .+...+
T Consensus        41 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g----~~~~~a  116 (307)
T 2ifu_A           41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG----TPDTAA  116 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT----CHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC----CHHHHH
Confidence            4455566677777777666654221 000 01112222233345555432111 1112556666543322    233456


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhh------HHHHHHHHHhHHhh
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM------VKAWALWGDYMEAQ  127 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~------~kaW~~WG~~~d~~  127 (173)
                      ..+..-|.++.+ |++++|...|..|+.+.+..      +.++...|..+..+
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~  168 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ  168 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc
Confidence            677777777777 77888888888887776643      45666666665544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.19  E-value=0.031  Score=44.88  Aligned_cols=110  Identities=13%  Similarity=0.144  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931          33 IVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD  111 (173)
Q Consensus        33 v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~  111 (173)
                      ..+|..-..+-+.+|....... .-.-+..++++-...+    .++..+..+...|.++.++|++++|-..|..|+.+.+
T Consensus        33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~  108 (292)
T 1qqe_A           33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG----NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT  108 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            3444444444455665531110 0111555566544432    3456689999999999999999999999999999988


Q ss_pred             hh------HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931         112 VM------VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus       112 ~~------~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      ..      +.+|..-|..+...- .+           -..|+.+|-+|+....
T Consensus       109 ~~g~~~~~a~~~~~lg~~~~~~l-g~-----------~~~A~~~~~~Al~~~~  149 (292)
T 1qqe_A          109 HRGQFRRGANFKFELGEILENDL-HD-----------YAKAIDCYELAGEWYA  149 (292)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTT-CC-----------HHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhh-cC-----------HHHHHHHHHHHHHHHH
Confidence            64      567777787766531 11           3579999999988743

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.17  E-value=0.015  Score=40.57  Aligned_cols=79  Identities=16%  Similarity=0.119  Sum_probs=62.5

Q ss_pred             chhhHHHHHHHHHHHHHhCC---chHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHH
Q psy5931          76 KEMTAEFYALKGMLLAQIGR---SAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMH  152 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~---~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLq  152 (173)
                      .+..++++...|..+..-++   .++|-+.|..|++++|+.++++...|.......  +           -..|+..|-+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g--~-----------y~~Ai~~w~~   68 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF--R-----------FQEAIDTWVL   68 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC--C-----------HHHHHHHHHH
Confidence            46678999999999977766   799999999999999999999999998766542  1           3568888888


Q ss_pred             HchhCCCchhhhhHH
Q psy5931         153 ACRHQKESMSRKYLA  167 (173)
Q Consensus       153 A~~~~~~~k~Rk~la  167 (173)
                      ......+..-|..|.
T Consensus        69 ~l~~~p~~~~~~~i~   83 (93)
T 3bee_A           69 LLDSNDPNLDRVTII   83 (93)
T ss_dssp             HHTCCCTTCCHHHHH
T ss_pred             HHhhCCCCccHHHHH
Confidence            887765544454444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.15  E-value=0.0041  Score=51.83  Aligned_cols=84  Identities=13%  Similarity=0.187  Sum_probs=53.5

Q ss_pred             HHHHHHHHhhhhc---cCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc-------
Q psy5931          40 IRQQVKCYLQMAA---LDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM-------  109 (173)
Q Consensus        40 lrEq~kc~l~~~~---~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql-------  109 (173)
                      .-+|.+||+...-   ...-.++.+.+.    ..+.+...+.++..|.+-|.++..+|++++|-+.|..|+.+       
T Consensus        12 ~l~~l~chf~w~l~~~~~~l~~~e~~~~----~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~   87 (472)
T 4g1t_A           12 SLRQLKCHFTWNLMEGENSLDDFEDKVF----YRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD   87 (472)
T ss_dssp             HHHTSCSTTTSCTTTTCCCHHHHHHHHH----HHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHhhChHHHhHHHHHHHHHHHHHHHH----HHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc
Confidence            3467789874211   111223444332    23456678889999999999999999999999999999987       


Q ss_pred             --chhhHHHHHHHHHhHHhh
Q psy5931         110 --HDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus       110 --~~~~~kaW~~WG~~~d~~  127 (173)
                        ++...-+|..-|.....+
T Consensus        88 ~~~~~~~~~~~nla~~y~~~  107 (472)
T 4g1t_A           88 QAEIRSLVTWGNYAWVYYHM  107 (472)
T ss_dssp             GCTTTTHHHHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHHHHHc
Confidence              444455555555444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.10  E-value=0.0057  Score=53.79  Aligned_cols=106  Identities=10%  Similarity=0.017  Sum_probs=79.7

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ..|.+..+.|-++-|+..+.+...+ |+-  .+++   ...+.||+++      +++.++++..+..--.   .+..++.
T Consensus        11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~--~~~~---~~lg~~~~~~------g~~~~A~~~~~~al~l---~p~~~~~   76 (477)
T 1wao_1           11 TQANDYFKAKDYENAIKFYSQAIELNPSN--AIYY---GNRSLAYLRT------ECYGYALGDATRAIEL---DKKYIKG   76 (477)
T ss_dssp             SSSSSTTTTTCHHHHHHHHHHHHHHCTTC--HHHH---HHHHHHHHHT------TCHHHHHHHHHHHHHS---CTTCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHH---HHHHHHHHHh------cCHHHHHHHHHHHHHh---CCCCHHH
Confidence            3455667788889999998886553 322  2333   3457888875      4677777766554331   3556889


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHh
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDY  123 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~  123 (173)
                      +...|..+.++|++++|.+.|..|++++|+.+.+|...|..
T Consensus        77 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           77 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999988888877765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.10  E-value=0.072  Score=42.37  Aligned_cols=133  Identities=9%  Similarity=-0.061  Sum_probs=78.7

Q ss_pred             HHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHH-HHHHhhhhccCChhHHHHHHHHhhhc---cccCCCchhh
Q psy5931           5 FGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQ-VKCYLQMAALDGKNQLQEGLEVIEHT---NLKYLTKEMT   79 (173)
Q Consensus         5 fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq-~kc~l~~~~~~~~~el~~gL~vi~~t---nl~~F~~~qk   79 (173)
                      -+......|-++.++..+.+.... |..+....+...... +.++..      .+++.++++.++..   ......+...
T Consensus        81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK------KVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT------SSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            345556777777787777765443 233322223332221 223332      23455665554332   1122344557


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccch---h----hHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHH
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHD---V----MVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMH  152 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~---~----~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLq  152 (173)
                      +..+...|.++..+|++++|...|..|+.+..   .    .+.++..-|..+..+-.             -..|+.+|-+
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-------------y~~Al~~~~k  221 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-------------YEESLYQVNK  221 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-------------HHHHHHHHHH
Confidence            88999999999999999999999999995532   2    22577777776655431             2446666666


Q ss_pred             Hchh
Q psy5931         153 ACRH  156 (173)
Q Consensus       153 A~~~  156 (173)
                      |+..
T Consensus       222 al~~  225 (293)
T 2qfc_A          222 AIEI  225 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.06  E-value=0.22  Score=38.42  Aligned_cols=143  Identities=13%  Similarity=0.045  Sum_probs=81.0

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ...+|.+....|-++-++..+.+.-. |.-+  ++.   ...+.+|..-..  ...++.++++..+..--.     ..++
T Consensus         9 ~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~--~a~---~~lg~~~~~g~~--~~~~~~~A~~~~~~a~~~-----~~~~   75 (273)
T 1ouv_A            9 LVGLGAKSYKEKDFTQAKKYFEKACD-LKEN--SGC---FNLGVLYYQGQG--VEKNLKKAASFYAKACDL-----NYSN   75 (273)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH-TTCH--HHH---HHHHHHHHHTSS--SCCCHHHHHHHHHHHHHT-----TCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHH-CCCH--HHH---HHHHHHHHcCCC--cCCCHHHHHHHHHHHHHC-----CCHH
Confidence            35677778888888888888888665 3221  232   334566665100  013344555544433111     1456


Q ss_pred             HHHHHHHHHHH----hCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          82 FYALKGMLLAQ----IGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        82 ~~~LKG~fl~~----Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .+...|.++..    .|++++|.+.|..|+...  .+.+|..-|.....-.....         --..|+.+|-+|+.. 
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~---------~~~~A~~~~~~a~~~-  143 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTR---------DFKKAVEYFTKACDL-  143 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCC---------CHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCccc---------CHHHHHHHHHHHHhc-
Confidence            67777888877    888888888888887773  56777777776655211110         124566666666655 


Q ss_pred             CCchhhhhHHHH
Q psy5931         158 KESMSRKYLAKV  169 (173)
Q Consensus       158 ~~~k~Rk~laRi  169 (173)
                      ++..+.-.++.+
T Consensus       144 ~~~~a~~~lg~~  155 (273)
T 1ouv_A          144 NDGDGCTILGSL  155 (273)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            244444444433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.01  E-value=0.008  Score=50.10  Aligned_cols=114  Identities=11%  Similarity=0.025  Sum_probs=65.5

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcC-CCCCc-------HHHHHHH-----HHHHHHHHhhhhccCChhHHHHHHHHhhhc
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYT-IPSVP-------IVDCFEK-----IRQQVKCYLQMAALDGKNQLQEGLEVIEHT   69 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~-lp~i~-------v~daF~K-----lrEq~kc~l~~~~~~~~~el~~gL~vi~~t   69 (173)
                      ...|.+..+.|-++-++..+.+... .|.-.       ..++...     ....+.||+.+      +++.++++.++..
T Consensus       183 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~------g~~~~A~~~~~~a  256 (338)
T 2if4_A          183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL------KRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT------TCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHH
Confidence            3456777788888888888888544 33221       1122222     22346677664      4566666666544


Q ss_pred             cccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHH
Q psy5931          70 NLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYME  125 (173)
Q Consensus        70 nl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d  125 (173)
                      --   ..+..++.+..+|..+..+|++++|.+.|..|+.++|+.+.+|...+....
T Consensus       257 l~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          257 LT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             HH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred             HH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            22   134567889999999999999999999999999999999999987776644

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.98  E-value=0.013  Score=47.18  Aligned_cols=79  Identities=11%  Similarity=0.000  Sum_probs=61.9

Q ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ..++.+..+|..+.+.|++++|...|..|+.++|+.+.+|..-|.....+-.             -..|+..|-+|+..+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-------------~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-------------PEQALADCRRALELD   68 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHTTSC
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHHhC
Confidence            3578899999999999999999999999999999999999999988776531             356888888888764


Q ss_pred             C-CchhhhhHHHH
Q psy5931         158 K-ESMSRKYLAKV  169 (173)
Q Consensus       158 ~-~~k~Rk~laRi  169 (173)
                      . +.++.-.++.+
T Consensus        69 p~~~~~~~~lg~~   81 (281)
T 2c2l_A           69 GQSVKAHFFLGQC   81 (281)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            2 23344444433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.85  E-value=0.071  Score=46.08  Aligned_cols=112  Identities=10%  Similarity=0.106  Sum_probs=65.3

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ..+|.+-.+.|-++-+...+.+.-.+|......++...   +.++...      +++.++.++++..--.   ++....+
T Consensus       325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~---~~~~~~~------~~~~~A~~~~~~Al~~---~~~~~~~  392 (530)
T 2ooe_A          325 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY---MKFARRA------EGIKSGRMIFKKARED---ARTRHHV  392 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHH---HHHHHHH------HHHHHHHHHHHHHHTC---TTCCTHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHH---HHHHHHh------cCHHHHHHHHHHHHhc---cCCchHH
Confidence            35667777788888888888887776543322333332   2333221      2344444444433111   1222344


Q ss_pred             HHHHHHH-HHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHh
Q psy5931          83 YALKGML-LAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEA  126 (173)
Q Consensus        83 ~~LKG~f-l~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~  126 (173)
                      +.-.|.+ ....|+.++|-+.|..|+..+|+.+..|..+|.+..+
T Consensus       393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~  437 (530)
T 2ooe_A          393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  437 (530)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence            4444444 2357888888888888888888888888888877654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.85  E-value=0.0095  Score=40.51  Aligned_cols=68  Identities=12%  Similarity=0.111  Sum_probs=50.0

Q ss_pred             HHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931          41 RQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW  117 (173)
Q Consensus        41 rEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW  117 (173)
                      ...+.||+++      +++.++++.++..--.   .+...+.+...|..+.++|++++|.+.|..|+.+.+..+..+
T Consensus        11 ~~lg~~~~~~------g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~   78 (100)
T 3ma5_A           11 YALAQEHLKH------DNASRALALFEELVET---DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK   78 (100)
T ss_dssp             HHHHHHHHHT------TCHHHHHHHHHHHHHH---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHc------CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence            3457788774      4566666666554221   234556899999999999999999999999999988654433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=95.72  E-value=0.036  Score=43.24  Aligned_cols=66  Identities=12%  Similarity=-0.090  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh-------hHH-----HHHHHHHhHHhhcCCCCCCCCCchhhhHHH
Q psy5931          78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV-------MVK-----AWALWGDYMEAQFTNPSPPGSAPNMVLGVF  145 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~-------~~k-----aW~~WG~~~d~~f~~~~~~~~~~~~~~~~~  145 (173)
                      ..|+.+.-+|..+.++|++++|-..|..|+.++|+       ...     +|..=|.-+.++-             --..
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg-------------r~~e   75 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR-------------SFDE   75 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-------------CHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC-------------CHHH
Confidence            36788889999999999999999999999999999       333     7777776666653             1356


Q ss_pred             HHHHHHHHchh
Q psy5931         146 AVTCFMHACRH  156 (173)
Q Consensus       146 Ai~CyLqA~~~  156 (173)
                      |+.||-+|+..
T Consensus        76 Al~~~~kAL~l   86 (159)
T 2hr2_A           76 ALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999987

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.65  E-value=0.12  Score=41.71  Aligned_cols=133  Identities=14%  Similarity=0.026  Sum_probs=76.3

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCC-cHHHHHHHHHHHHHHHhhhhccCCh--hHHHHHHHHhhhccccCCCchh
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSV-PIVDCFEKIRQQVKCYLQMAALDGK--NQLQEGLEVIEHTNLKYLTKEM   78 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i-~v~daF~KlrEq~kc~l~~~~~~~~--~el~~gL~vi~~tnl~~F~~~q   78 (173)
                      +.+|.+-++.|-++-++..+.+-..+ +.. ....+-.-+..-+.+|..  .+.+.  .-++.++++....+    .+..
T Consensus        80 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--g~~~~A~~~~~~Al~~~~~~~----~~~~  153 (307)
T 2ifu_A           80 EQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--LDLSKAVHLYQQAAAVFENEE----RLRQ  153 (307)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTT----CHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCC----ChhH
Confidence            45566666777777676666653221 000 001111122233444433  11111  11566666655432    2345


Q ss_pred             hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH------HHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHH
Q psy5931          79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV------KAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMH  152 (173)
Q Consensus        79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~------kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLq  152 (173)
                      .++.+...|.++.++|++++|-..|..|+.+.+..+      .+|..-|.....+  .+           -..|+.+|-+
T Consensus       154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~--g~-----------~~~A~~~~~~  220 (307)
T 2ifu_A          154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR--AD-----------YVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC-----------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc--CC-----------HHHHHHHHHH
Confidence            688999999999999999999999999999877543      3444444433322  11           3567777777


Q ss_pred             Hc
Q psy5931         153 AC  154 (173)
Q Consensus       153 A~  154 (173)
                      +.
T Consensus       221 al  222 (307)
T 2ifu_A          221 SY  222 (307)
T ss_dssp             HT
T ss_pred             Hh
Confidence            77

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.62  E-value=0.19  Score=38.84  Aligned_cols=78  Identities=14%  Similarity=0.070  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHH----hCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931          80 AEFYALKGMLLAQ----IGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR  155 (173)
Q Consensus        80 aE~~~LKG~fl~~----Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~  155 (173)
                      ++.+..-|.++..    .|++++|-+.|..|+...|  +.++..-|....+-.....      +   -..|+.+|-+|+.
T Consensus       182 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~------~---~~~A~~~~~~a~~  250 (273)
T 1ouv_A          182 SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTR------N---EKQAIENFKKGCK  250 (273)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSC------C---STTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCccc------C---HHHHHHHHHHHHH
Confidence            4566777888888    8888888888888888866  6666666666554110010      0   1348888888888


Q ss_pred             hCCCchhhhhHHHH
Q psy5931         156 HQKESMSRKYLAKV  169 (173)
Q Consensus       156 ~~~~~k~Rk~laRi  169 (173)
                      . ++..+...+.++
T Consensus       251 ~-~~~~a~~~l~~~  263 (273)
T 1ouv_A          251 L-GAKGACDILKQL  263 (273)
T ss_dssp             H-TCHHHHHHHHTC
T ss_pred             c-CCHHHHHHHHHH
Confidence            8 566666665543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.56  E-value=0.12  Score=35.69  Aligned_cols=90  Identities=13%  Similarity=0.112  Sum_probs=62.5

Q ss_pred             CcHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc
Q psy5931          31 VPIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM  109 (173)
Q Consensus        31 i~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql  109 (173)
                      +...|||    +-+.-++++..-.. ..-++++++..+..+-   ....+++++..=|..+.++|+.++|...|..|+.+
T Consensus         3 Lsa~dc~----~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~---~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCF----ELGKVAYTEADYYHTELWMEQALRQLDEGEI---STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHH----HHHHHHHHccchHHHHHHHHHHHHhhhccCC---CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            4566666    44555555311100 1116666666654432   24567888888899999999999999999999999


Q ss_pred             chhhHHHHHHHHHhHHhhc
Q psy5931         110 HDVMVKAWALWGDYMEAQF  128 (173)
Q Consensus       110 ~~~~~kaW~~WG~~~d~~f  128 (173)
                      .|+.+.+....+ +.+++.
T Consensus        76 ~P~~~~~~~n~~-~~~~~~   93 (104)
T 2v5f_A           76 DPEHQRANGNLK-YFEYIM   93 (104)
T ss_dssp             CTTCHHHHHHHH-HHHHHH
T ss_pred             CCCCHHHHhhHH-HHHHHH
Confidence            999999988887 445443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.19  E-value=0.062  Score=46.44  Aligned_cols=113  Identities=12%  Similarity=0.062  Sum_probs=75.1

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHH-HHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVK-CYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~k-c~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      .+.++.+-+++|-.+-+...+.+-...|... .+.+..   .+. ++...      ++..++..+.+..- ..  .+..+
T Consensus       359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~-~~~~~~---~a~~~~~~~------~~~~~A~~~~e~al-~~--~p~~~  425 (530)
T 2ooe_A          359 YIQYMKFARRAEGIKSGRMIFKKAREDARTR-HHVYVT---AALMEYYCS------KDKSVAFKIFELGL-KK--YGDIP  425 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC-THHHHH---HHHHHHHHT------CCHHHHHHHHHHHH-HH--HTTCH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhccCCc-hHHHHH---HHHHHHHHc------CChhHHHHHHHHHH-HH--CCCCH
Confidence            3567778888888888999999987766432 222221   111 22221      12333443333221 11  24557


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhh----HHHHHHHHHhHHhh
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM----VKAWALWGDYMEAQ  127 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~----~kaW~~WG~~~d~~  127 (173)
                      +++..-|.++.++|+.++|-..|..|++..|..    ...|..|..|....
T Consensus       426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~  476 (530)
T 2ooe_A          426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  476 (530)
T ss_dssp             HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence            899999999999999999999999999986543    45999999996654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.17  E-value=0.099  Score=40.66  Aligned_cols=81  Identities=15%  Similarity=0.075  Sum_probs=62.8

Q ss_pred             HHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931          43 QVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD  122 (173)
Q Consensus        43 q~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~  122 (173)
                      .+-|+...   ..+.+.++|+.+++..-=+. .|+++.+-++.-|....++|++++|-+.|.++++++|....+-..-..
T Consensus        38 ya~~Lv~S---~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           38 YAWCLVRS---KYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL  113 (152)
T ss_dssp             HHHHHHTC---SSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHcC---CCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            45566553   24678999998888754433 355889999999999999999999999999999999987777765555


Q ss_pred             hHHhh
Q psy5931         123 YMEAQ  127 (173)
Q Consensus       123 ~~d~~  127 (173)
                      +-+++
T Consensus       114 ie~~~  118 (152)
T 1pc2_A          114 IDKAM  118 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=94.73  E-value=0.047  Score=37.06  Aligned_cols=65  Identities=15%  Similarity=0.098  Sum_probs=48.5

Q ss_pred             HHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH
Q psy5931          41 RQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV  114 (173)
Q Consensus        41 rEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~  114 (173)
                      ...+.+|+..      +++.++++.++..--   ..+..++.+...|.++.++|++++|...|..|+.+.|..+
T Consensus        23 ~~lg~~~~~~------g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~   87 (115)
T 2kat_A           23 FTLGKTYAEH------EQFDAALPHLRAALD---FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG   87 (115)
T ss_dssp             HHHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHc------cCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            3457777774      456666666554322   1345578899999999999999999999999999988644

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.18  E-value=0.19  Score=41.16  Aligned_cols=78  Identities=13%  Similarity=0.072  Sum_probs=57.1

Q ss_pred             HHHHhhhhccCChhHHHHHHHHhhhccc---cCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHH
Q psy5931          44 VKCYLQMAALDGKNQLQEGLEVIEHTNL---KYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW  120 (173)
Q Consensus        44 ~kc~l~~~~~~~~~el~~gL~vi~~tnl---~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~W  120 (173)
                      +++|.+.      +++.+++++++..--   ..-.++.+++++.+-|.++..+|++++|...|..|..+.+..+..+..+
T Consensus       142 a~~~~~~------g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  215 (434)
T 4b4t_Q          142 ATLHYQK------KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV  215 (434)
T ss_dssp             HHHHHHH------TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHc------cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence            5556553      567788877765321   1224688999999999999999999999999999998877655555555


Q ss_pred             HHhHHhh
Q psy5931         121 GDYMEAQ  127 (173)
Q Consensus       121 G~~~d~~  127 (173)
                      |.+...+
T Consensus       216 ~~~~~~~  222 (434)
T 4b4t_Q          216 AELDLMS  222 (434)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=93.72  E-value=0.64  Score=39.11  Aligned_cols=101  Identities=9%  Similarity=-0.091  Sum_probs=60.4

Q ss_pred             HHHHHhCCChHHHHHHHHhhcCCCCCcH--HHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931           6 GKIARKHHLTSVCLDSLFRLYTIPSVPI--VDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY   83 (173)
Q Consensus         6 a~iARkh~l~~vc~~~L~ki~~lp~i~v--~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~   83 (173)
                      |.++-+-+=.+-++..|.+....| -|.  .+++..+   ..++.++      +.+.++++-.+...-.--.|...++..
T Consensus       142 a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~L---G~al~~L------G~~~eAl~~l~~a~~g~~~P~~~~da~  211 (282)
T 4f3v_A          142 AVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAH---GVAAANL------ALFTEAERRLTEANDSPAGEACARAIA  211 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHH---HHHHHHT------TCHHHHHHHHHHHHTSTTTTTTHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHH---HHHHHHC------CCHHHHHHHHHHHhcCCCCccccHHHH
Confidence            445555555556666666554443 221  1223222   2233332      346666666665543221133377777


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931          84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW  117 (173)
Q Consensus        84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW  117 (173)
                      .-+|+.+.++|+.|||...|..++..+|. +++|
T Consensus       212 ~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~  244 (282)
T 4f3v_A          212 WYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA  244 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence            88888888888888888888888888888 7766

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=93.61  E-value=0.45  Score=38.91  Aligned_cols=104  Identities=10%  Similarity=0.068  Sum_probs=72.8

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCC----CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCch
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTI----PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKE   77 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~l----p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~   77 (173)
                      ...+|.+-.+.|-++-++..+.+...+    ++.+....+   .--...|.+..   +...+.++++.++..+.    .+
T Consensus       264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~l~~ly~~~~---~~~~~~~al~~~~~~~~----~~  333 (378)
T 3q15_A          264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF---LFLQAVYKETV---DERKIHDLLSYFEKKNL----HA  333 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH---HHHHHHHSSSC---CHHHHHHHHHHHHHTTC----HH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHHhCCC---cHHHHHHHHHHHHhCCC----hh
Confidence            456788888888888888888775443    222222222   22222333321   12448899999988664    56


Q ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHH
Q psy5931          78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK  115 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k  115 (173)
                      ...+++..-|.++.+.|++++|.+.|..|+.+.+...+
T Consensus       334 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~  371 (378)
T 3q15_A          334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK  371 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence            77889999999999999999999999999998766443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=93.38  E-value=0.34  Score=43.79  Aligned_cols=66  Identities=6%  Similarity=-0.016  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHHHhC--CchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          79 TAEFYALKGMLLAQIG--RSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        79 kaE~~~LKG~fl~~Lg--~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      ....|..||.++.++|  +.++|-..|..++.++|....+|..-|..+.++-.            .-+.|+.+|-+++..
T Consensus       106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~------------~~~~el~~~~~~I~~  173 (567)
T 1dce_A          106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV------------APAEELAFTDSLITR  173 (567)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCC------------CHHHHHHHHHTTTTT
T ss_pred             CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC------------ChHHHHHHHHHHHHH
Confidence            3344445555555555  22555555555555555545555444444433310            124566666666665

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.30  E-value=0.18  Score=40.05  Aligned_cols=76  Identities=12%  Similarity=0.122  Sum_probs=54.4

Q ss_pred             HHHHHHHHhhhhccCChhHHHHH-HHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHH
Q psy5931          40 IRQQVKCYLQMAALDGKNQLQEG-LEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKA  116 (173)
Q Consensus        40 lrEq~kc~l~~~~~~~~~el~~g-L~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ka  116 (173)
                      +++|++-.+...-. +..++-.. |--+.+.|-+-++++++++.+.+-|..+..-|++-.|...|.+|+++....+|.
T Consensus        23 l~dqik~L~d~~LY-~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           23 VIDHVRDMAAAGLH-SNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHhhhH-HHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            56777766653111 11222222 223355677889999999999999999999999999999999999998866544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=93.21  E-value=2.7  Score=33.67  Aligned_cols=118  Identities=8%  Similarity=-0.096  Sum_probs=72.9

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..|.++...|-++.++..+.+...+ |.-+......-+...+.+|....... ...-+.+++++-...+-    +...+.
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~   94 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV----WHYALW   94 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----HHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc----HHHHHH
Confidence            4577888899999999998885443 32221111222334455665532110 01115556665554332    345566


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccch--------hhHHHHHHHHHhHH
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHD--------VMVKAWALWGDYME  125 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~--------~~~kaW~~WG~~~d  125 (173)
                      .+...|.++...|++++|...|..++.+.+        ..+.++...|....
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  146 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW  146 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence            778899999999999999999999999864        34455555555443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=92.62  E-value=2.2  Score=32.29  Aligned_cols=98  Identities=13%  Similarity=0.106  Sum_probs=54.9

Q ss_pred             HHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHH----hCCchHHHHHHHHHHccch--hhHHHHHHHHHhHHhhcCCC
Q psy5931          58 QLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQ----IGRSAEANKAFSAAVQMHD--VMVKAWALWGDYMEAQFTNP  131 (173)
Q Consensus        58 el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~----Lg~~deA~~~F~~Avql~~--~~~kaW~~WG~~~d~~f~~~  131 (173)
                      ++.++++.++.. .    ....++-...-|.++..    .++.++|-+.|..|+...+  ..+.++..-|.....-....
T Consensus        68 ~~~~A~~~~~~A-~----~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~  142 (212)
T 3rjv_A           68 DYPQARQLAEKA-V----EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP  142 (212)
T ss_dssp             CHHHHHHHHHHH-H----HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS
T ss_pred             CHHHHHHHHHHH-H----HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC
Confidence            455555555444 1    12234445555666665    6777888888888888777  45777777777765532111


Q ss_pred             CCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhHHHH
Q psy5931         132 SPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKV  169 (173)
Q Consensus       132 ~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~laRi  169 (173)
                      .         =-..|+..|-+|+...++..+.-.|+.+
T Consensus       143 ~---------d~~~A~~~~~~A~~~~~~~~a~~~Lg~~  171 (212)
T 3rjv_A          143 E---------DDVKASEYFKGSSSLSRTGYAEYWAGMM  171 (212)
T ss_dssp             C---------CHHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred             C---------CHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            0         0244666666666553344444444443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=91.53  E-value=0.92  Score=34.16  Aligned_cols=72  Identities=15%  Similarity=0.043  Sum_probs=57.2

Q ss_pred             ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          55 GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        55 ~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      .+.+.++|+.+++..==+. .|+++-|-++.=|..+.|+|++++|-+.+...++++|....|...-...-+++
T Consensus        50 ~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           50 YNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             SHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            4778999999998743321 25588899999999999999999999999999999998887776544444433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=91.48  E-value=0.86  Score=38.27  Aligned_cols=108  Identities=5%  Similarity=-0.021  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHhhhhccCChhHH-HHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhC--CchHHHHHHHHHHccc
Q psy5931          34 VDCFEKIRQQVKCYLQMAALDGKNQL-QEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIG--RSAEANKAFSAAVQMH  110 (173)
Q Consensus        34 ~daF~KlrEq~kc~l~~~~~~~~~el-~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg--~~deA~~~F~~Avql~  110 (173)
                      +|.|..+...+...++.      +|+ .++|+..+..-.   -.+.-...+..||.++..+|  +.++|-+.+..++.++
T Consensus        29 ~~~y~~~~~~~~a~~~~------~e~s~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n   99 (306)
T 3dra_A           29 DEDYKQIMGLLLALMKA------EEYSERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN   99 (306)
T ss_dssp             CHHHHHHHHHHHHHHHT------TCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC
Confidence            67777777777777764      332 366666655443   35566788999999999999  9999999999999999


Q ss_pred             hhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931         111 DVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus       111 ~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      |....+|..=|..+.+++..... .     .-...++.++-+++..
T Consensus       100 Pk~y~aW~~R~~iL~~~~~~l~~-~-----~~~~~EL~~~~~~l~~  139 (306)
T 3dra_A          100 EKNYQIWNYRQLIIGQIMELNNN-D-----FDPYREFDILEAMLSS  139 (306)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTT-C-----CCTHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhccc-c-----CCHHHHHHHHHHHHHh
Confidence            99999999999999555422110 0     0125677777777655

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=91.22  E-value=0.81  Score=39.15  Aligned_cols=66  Identities=6%  Similarity=-0.016  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHHHHHhCC--chHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          79 TAEFYALKGMLLAQIGR--SAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        79 kaE~~~LKG~fl~~Lg~--~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      ....+..||.++.++|+  .+++-..+..++.++|....+|..=|..+.++-.            ....++.++-+++..
T Consensus       107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~------------~~~eel~~~~~~I~~  174 (331)
T 3dss_A          107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV------------APAEELAFTDSLITR  174 (331)
T ss_dssp             CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc------------CHHHHHHHHHHHHHH
Confidence            34444455555555553  3455555555555555445555444444433210            124677777777765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=91.18  E-value=3.2  Score=35.77  Aligned_cols=137  Identities=10%  Similarity=0.039  Sum_probs=89.7

Q ss_pred             HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931           4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY   83 (173)
Q Consensus         4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~   83 (173)
                      .|..+-.+....+-++....++-.+ +-+--.+..--|+   ++..+     ...+.+.|+.++..-.   ..+.....+
T Consensus        59 ~~r~~~~~~e~se~AL~lt~~~L~~-nP~~ytaWn~R~~---iL~~l-----~~~l~eEL~~~~~~L~---~nPKny~aW  126 (349)
T 3q7a_A           59 YFRAIAAKEEKSERALELTEIIVRM-NPAHYTVWQYRFS---LLTSL-----NKSLEDELRLMNEFAV---QNLKSYQVW  126 (349)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHH-CTTCHHHHHHHHH---HHHHT-----TCCHHHHHHHHHHHHH---TTCCCHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHh-CchhHHHHHHHHH---HHHHh-----hhhHHHHHHHHHHHHH---hCCCcHHHH
Confidence            3444455566667777777776554 2232333322222   22222     1136677777766644   344567789


Q ss_pred             HHHHHHHHHh-C-CchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          84 ALKGMLLAQI-G-RSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        84 ~LKG~fl~~L-g-~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ..||.++.++ | +.+++.+.+..++..+|....+|..=+-.+.++..-++     ........++.++-+++..+
T Consensus       127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~-----~~~~~~~eELe~~~k~I~~d  197 (349)
T 3q7a_A          127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGR-----ISEAQWGSELDWCNEMLRVD  197 (349)
T ss_dssp             HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc-----cchhhHHHHHHHHHHHHHhC
Confidence            9999999998 8 88999999999999999999999888777777653332     12344568899998888753

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=90.87  E-value=1.5  Score=37.91  Aligned_cols=106  Identities=7%  Similarity=0.034  Sum_probs=78.1

Q ss_pred             CcHHHHHHHHHHHHHHHhhhhccCChhH-HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhC-CchHHHHHHHHHHc
Q psy5931          31 VPIVDCFEKIRQQVKCYLQMAALDGKNQ-LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIG-RSAEANKAFSAAVQ  108 (173)
Q Consensus        31 i~v~daF~KlrEq~kc~l~~~~~~~~~e-l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg-~~deA~~~F~~Avq  108 (173)
                      |--.+.|..+-...+..++.      .| -.++|+..+..-.   ..+.....+..||.++..+| +.++|-+.+..++.
T Consensus        47 i~y~~~y~~~~~~~r~~~~~------~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~  117 (349)
T 3q7a_A           47 IMYSEEYKDAMDYFRAIAAK------EEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV  117 (349)
T ss_dssp             BCCCHHHHHHHHHHHHHHHT------TCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             eeeCHHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            33445666666666655553      22 2356666655543   34556788999999999999 59999999999999


Q ss_pred             cchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931         109 MHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus       109 l~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      .+|....+|..=|..+.+++...+           ..++.++-+++..
T Consensus       118 ~nPKny~aW~hR~wlL~~l~~~~~-----------~~EL~~~~k~L~~  154 (349)
T 3q7a_A          118 QNLKSYQVWHHRLLLLDRISPQDP-----------VSEIEYIHGSLLP  154 (349)
T ss_dssp             TTCCCHHHHHHHHHHHHHHCCSCC-----------HHHHHHHHHHTSS
T ss_pred             hCCCcHHHHHHHHHHHHHhcCCCh-----------HHHHHHHHHHHHh
Confidence            999999999999999998854232           4788888888865

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=90.24  E-value=6.8  Score=32.76  Aligned_cols=128  Identities=10%  Similarity=0.007  Sum_probs=83.7

Q ss_pred             HHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHH
Q psy5931           5 FGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYA   84 (173)
Q Consensus         5 fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~   84 (173)
                      +|..--..|=++-+...|..+-...  | .+.  ..--.+..+++      .+++.+++..++.. +.+=.+.+..+.+.
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~--p-~~~--~~~~~a~l~~~------~~r~~dA~~~l~~a-~~~~d~~~~~~a~~  175 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAG--S-EHL--VAWMKAVVYGA------AERWTDVIDQVKSA-GKWPDKFLAGAAGV  175 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTT--C-HHH--HHHHHHHHHHH------TTCHHHHHHHHTTG-GGCSCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcC--C-chH--HHHHHHHHHHH------cCCHHHHHHHHHHh-hccCCcccHHHHHH
Confidence            3444445677888888887764321  1 222  11112224444      35688888888744 33323445678899


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHccc--hh-hHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          85 LKGMLLAQIGRSAEANKAFSAAVQMH--DV-MVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        85 LKG~fl~~Lg~~deA~~~F~~Avql~--~~-~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ..|..+..+|++++|...|..++.-.  |. .+.+|..=|.-+.++-..             ..|..+|=++....
T Consensus       176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~-------------deA~~~l~~a~a~~  238 (282)
T 4f3v_A          176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE-------------SAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH-------------HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHhcC
Confidence            99999999999999999999998554  55 667888888887777533             34777776665553

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=89.11  E-value=6.1  Score=31.54  Aligned_cols=117  Identities=8%  Similarity=-0.036  Sum_probs=71.3

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC---CCCcHHHHHHHHH--HHHHHHhhhhccCChhHHHHHHHHhhhccccCCCc-
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI---PSVPIVDCFEKIR--QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTK-   76 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l---p~i~v~daF~Klr--Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~-   76 (173)
                      ..+|.+....|-++-+...+.+...+   +..+.  .+.-..  -.+..++..      +++.++.+.++..--..... 
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------g~~~~A~~~~~~a~~~~~~~~  249 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS--DWISNANKVRVIYWQMT------GDKAAAANWLRHTAKPEFANN  249 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH--HHHHHHHHHHHHHHHHT------TCHHHHHHHHHHSCCCCCTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcch--hHHHHHHHHHHHHHHHC------CCHHHHHHHHHhCCCCCCCcc
Confidence            45778888888888888888875433   22221  122221  233345543      45666766665543222111 


Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh------HHHHHHHHHhHHhh
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM------VKAWALWGDYMEAQ  127 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~------~kaW~~WG~~~d~~  127 (173)
                      ......+...|.++...|++++|-..+..++...+..      ..++...|..+...
T Consensus       250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  306 (373)
T 1hz4_A          250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA  306 (373)
T ss_dssp             GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence            1223345677999999999999999999998886642      34566666655554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=89.00  E-value=0.95  Score=40.88  Aligned_cols=54  Identities=11%  Similarity=0.099  Sum_probs=46.2

Q ss_pred             hhhHHHHHHHHHHHHHhC-CchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCC
Q psy5931          77 EMTAEFYALKGMLLAQIG-RSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTN  130 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg-~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~  130 (173)
                      +....-|..||.++.++| .+++|-+.+..++..+|.-..||..=|..+.+++..
T Consensus       140 ~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          140 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence            344566889999999999 889999999999999999999999888888887643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=88.01  E-value=4.4  Score=41.94  Aligned_cols=112  Identities=13%  Similarity=0.053  Sum_probs=80.8

Q ss_pred             HHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHH
Q psy5931           5 FGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYA   84 (173)
Q Consensus         5 fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~   84 (173)
                      .|.+|-.+|+++-|.....|..     .-.+|...+-|+            -+.+.+|.+..+..+.        .+.|.
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie~------------i~nldrAiE~Aervn~--------p~vWs 1109 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIEH------------IGNLDRAYEFAERCNE--------PAVWS 1109 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHHH------------HhhHHHHHHHHHhcCC--------HHHHH
Confidence            5888899999999988888852     123333333331            2357788888876543        88999


Q ss_pred             HHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC
Q psy5931          85 LKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE  159 (173)
Q Consensus        85 LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~  159 (173)
                      ..|.-+.+.|+.+||-.+|-.|     ..+.+|..=|.++.+.-.             -+.|+..|.+|....++
T Consensus      1110 qLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGk-------------yEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1110 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGN-------------WEELVKYLQMARKKARE 1166 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhhccc
Confidence            9999999999999999999887     557788888888777641             34577777666655443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=87.01  E-value=3.6  Score=31.06  Aligned_cols=78  Identities=14%  Similarity=0.065  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHhC----CchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          81 EFYALKGMLLAQIG----RSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        81 E~~~LKG~fl~~Lg----~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +-+..-|.++.. |    +.++|.+.|..|+..  ..+.++...|.....--...      +   =-..|+..|.+|+..
T Consensus        51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~~a~~~Lg~~y~~g~g~~------~---d~~~A~~~~~~A~~~  118 (212)
T 3rjv_A           51 DALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSKSGEIVLARVLVNRQAGA------T---DVAHAITLLQDAARD  118 (212)
T ss_dssp             HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHTCGGGSS------C---CHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCc------c---CHHHHHHHHHHHHHc
Confidence            444445555555 5    666666666666443  45566666665543211000      0   135577777777766


Q ss_pred             CCC---chhhhhHHHHh
Q psy5931         157 QKE---SMSRKYLAKVD  170 (173)
Q Consensus       157 ~~~---~k~Rk~laRiL  170 (173)
                      ...   ..+--.|+.+.
T Consensus       119 ~~~~~~~~a~~~Lg~~y  135 (212)
T 3rjv_A          119 SESDAAVDAQMLLGLIY  135 (212)
T ss_dssp             TTSHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHH
Confidence            322   45555555543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.09  E-value=3  Score=33.89  Aligned_cols=106  Identities=13%  Similarity=0.076  Sum_probs=69.3

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC--CCCcHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchhh
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI--PSVPIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEMT   79 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l--p~i~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~qk   79 (173)
                      +++|++-...|-++-++..|.++...  ...+-.+-..=+.+++.+|+....... ..-+..++.+.++.+   -.+..+
T Consensus       139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~  215 (434)
T 4b4t_Q          139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY---CPTQTV  215 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC---CCHHHH
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC---CchHHH
Confidence            46788888889999998888875431  112212223335677888887521100 011334444433332   245678


Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHD  111 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~  111 (173)
                      +.++..-|.++...|++++|.+.|..|+...+
T Consensus       216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~  247 (434)
T 4b4t_Q          216 AELDLMSGILHCEDKDYKTAFSYFFESFESYH  247 (434)
T ss_dssp             HHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999987654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=85.60  E-value=3  Score=34.88  Aligned_cols=90  Identities=4%  Similarity=-0.068  Sum_probs=68.5

Q ss_pred             HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCch--HHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCC
Q psy5931          59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSA--EANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGS  136 (173)
Q Consensus        59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~d--eA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~  136 (173)
                      +.+.|+.++..--   ..+.....+..||.++.++|+.+  ++-..+..++..+|.--.||..=|..+.++-...     
T Consensus       126 ~~~EL~~~~~~l~---~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~-----  197 (306)
T 3dra_A          126 PYREFDILEAMLS---SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA-----  197 (306)
T ss_dssp             THHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC-----
T ss_pred             HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc-----
Confidence            4556666655443   34556778999999999999999  9999999999999999999998888777653211     


Q ss_pred             CchhhhHHHHHHHHHHHchhCC
Q psy5931         137 APNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus       137 ~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                        ....-..++.++-+++..+.
T Consensus       198 --~~~~~~eEl~~~~~aI~~~p  217 (306)
T 3dra_A          198 --TDNTIDEELNYVKDKIVKCP  217 (306)
T ss_dssp             --CHHHHHHHHHHHHHHHHHCS
T ss_pred             --hhhhHHHHHHHHHHHHHhCC
Confidence              12346779999999987643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=83.20  E-value=14  Score=32.33  Aligned_cols=123  Identities=10%  Similarity=-0.025  Sum_probs=75.3

Q ss_pred             CCCCcHHHHHHHHHHHHHHHhhhhcc-CChhHHHHHHHHhhhc---cccCCCc--hhhHHHHHHHHHHHHHhCCchHHHH
Q psy5931          28 IPSVPIVDCFEKIRQQVKCYLQMAAL-DGKNQLQEGLEVIEHT---NLKYLTK--EMTAEFYALKGMLLAQIGRSAEANK  101 (173)
Q Consensus        28 lp~i~v~daF~KlrEq~kc~l~~~~~-~~~~el~~gL~vi~~t---nl~~F~~--~qkaE~~~LKG~fl~~Lg~~deA~~  101 (173)
                      .|..+-.+....+.+.+++.++.... ....++.+++++.+..   ...-|.+  +..+..+..=|..+..+|++++|..
T Consensus       282 ~~~~~~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~  361 (433)
T 3qww_A          282 LSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALK  361 (433)
T ss_dssp             CSSCCCHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            34444445555555555555542110 0111244444444332   1123344  4678888889999999999999999


Q ss_pred             HHHHHHcc--------chhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931         102 AFSAAVQM--------HDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus       102 ~F~~Avql--------~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      .|..|+.+        ||..+..+..-|..+..+..-+      ....+-+.|+.-+...-+-
T Consensus       362 ~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~------eA~~~~~~Al~i~~~~lG~  418 (433)
T 3qww_A          362 YGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKA------AGEKALKKAIAIMEVAHGK  418 (433)
T ss_dssp             HHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHH------HHHHHHHHHHHHHHHHcCC
Confidence            99999977        6677788888888877776333      3445555566555554443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=82.11  E-value=2.3  Score=39.56  Aligned_cols=51  Identities=8%  Similarity=-0.081  Sum_probs=46.5

Q ss_pred             hhHHHHHHHHHHHHHhCCchHHH-HHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931          78 MTAEFYALKGMLLAQIGRSAEAN-KAFSAAVQMHDVMVKAWALWGDYMEAQF  128 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~deA~-~~F~~Avql~~~~~kaW~~WG~~~d~~f  128 (173)
                      ..++++..-+.|+.+.|+.++|- +.|..|+..+|..+..|..|+.+.++..
T Consensus       341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~  392 (679)
T 4e6h_A          341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT  392 (679)
T ss_dssp             TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            35789999999999999999996 9999999999999999999999988874

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=81.94  E-value=6  Score=33.69  Aligned_cols=83  Identities=10%  Similarity=0.035  Sum_probs=63.0

Q ss_pred             hhhHHHHHHHHHHHHHhCCc-hHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCC-CchhhhHHHHHHHHHHHc
Q psy5931          77 EMTAEFYALKGMLLAQIGRS-AEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGS-APNMVLGVFAVTCFMHAC  154 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~-deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~-~~~~~~~~~Ai~CyLqA~  154 (173)
                      +..-.-+..||.++..+|+. +++-..+..++..+|.-..||..=|..+.++....+.+.. ......-..++.|+.+|+
T Consensus       141 prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai  220 (331)
T 3dss_A          141 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF  220 (331)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHH
Confidence            44455688899999999995 9999999999999999999999999999988754321110 011245678999999999


Q ss_pred             hhCCC
Q psy5931         155 RHQKE  159 (173)
Q Consensus       155 ~~~~~  159 (173)
                      ..+.+
T Consensus       221 ~~~P~  225 (331)
T 3dss_A          221 FTDPN  225 (331)
T ss_dssp             HHSTT
T ss_pred             HhCCC
Confidence            77543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=81.82  E-value=4.1  Score=31.04  Aligned_cols=62  Identities=10%  Similarity=0.034  Sum_probs=51.8

Q ss_pred             ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931          55 GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA  118 (173)
Q Consensus        55 ~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~  118 (173)
                      .+.+.+.|+.+++..=-  -+++.+-|.+..=|.=+-|+|++++|-+.=...+++.|....|=.
T Consensus        55 ~~~d~~~GI~LLe~l~~--~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           55 DVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             CHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHh--cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            46778999999876432  247789999999999999999999999999999999997665543

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=81.61  E-value=2.6  Score=37.84  Aligned_cols=99  Identities=14%  Similarity=0.135  Sum_probs=73.5

Q ss_pred             CCChHHHHHHHHhhcCC--C----CCc------HHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhc----cccCCC
Q psy5931          12 HHLTSVCLDSLFRLYTI--P----SVP------IVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHT----NLKYLT   75 (173)
Q Consensus        12 h~l~~vc~~~L~ki~~l--p----~i~------v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~t----nl~~F~   75 (173)
                      +...|-|-+.|+|++++  +    .++      =..++.=+-.-.|+|.++.+.   .-...=+..|+++    +++.|+
T Consensus       139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~---~lckni~k~i~~~~~~p~~~~~p  215 (455)
T 3t5v_B          139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESP---QLCSNIFKNFQPKSMLAHFNEYQ  215 (455)
T ss_dssp             THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCC---TTHHHHHHTHHHHCCCSCGGGSC
T ss_pred             hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCH---HHHHHHHHHhccCCCCcChhhCC
Confidence            45566788999998885  2    221      122455556667999987432   2244445556665    568999


Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc-chhh
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM-HDVM  113 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql-~~~~  113 (173)
                      +.|+..+.+--|.+...-+++.+|++.+..|... +|..
T Consensus       216 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          216 LDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            9999999999999999999999999999999999 8853

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=80.35  E-value=14  Score=31.39  Aligned_cols=27  Identities=7%  Similarity=0.101  Sum_probs=12.7

Q ss_pred             CCchHHHHHHHHHHccchhhHHHHHHHHHh
Q psy5931          94 GRSAEANKAFSAAVQMHDVMVKAWALWGDY  123 (173)
Q Consensus        94 g~~deA~~~F~~Avql~~~~~kaW~~WG~~  123 (173)
                      ++.++|-+.|..|+   +..+.+|..-|..
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~  257 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQL  257 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence            34444555554444   4444444444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=80.29  E-value=0.82  Score=36.11  Aligned_cols=37  Identities=14%  Similarity=0.115  Sum_probs=33.5

Q ss_pred             HHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          91 AQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        91 ~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      ..+++.|+|-..|..|+++|..++|.|..++.|=-+.
T Consensus        71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq  107 (161)
T 4h7y_A           71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQ  107 (161)
T ss_dssp             HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHT
T ss_pred             HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence            5669999999999999999999999999999986664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.55
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.4
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.35
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.34
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.08
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.02
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.96
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.95
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.92
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.91
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.9
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.89
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.87
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.82
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.78
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.71
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.55
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.51
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.42
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.37
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.22
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.17
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.13
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.12
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.05
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	96.93
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.89
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.68
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.67
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.63
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.54
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	95.82
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.79
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	95.77
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	95.47
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	95.1
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.93
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	94.76
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	94.71
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.69
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	94.67
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	93.72
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	92.71
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	92.36
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	91.95
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	91.28
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	88.88
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	81.34

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1e-07  Score=69.73  Aligned_cols=111  Identities=9%  Similarity=0.081  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHH
Q psy5931          37 FEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKA  116 (173)
Q Consensus        37 F~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ka  116 (173)
                      =.++++++-+|++.      +++.++++..+..--   ..+..++.|...|..+..+|++++|-..|..|++++|+.+++
T Consensus        10 a~~l~~~gn~~~~~------~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a   80 (159)
T d1a17a_          10 AEELKTQANDYFKA------KDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG   80 (159)
T ss_dssp             HHHHHHHHHHHHHT------TCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHc------CCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHH
Confidence            35788899999984      567777777665443   246789999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHH
Q psy5931         117 WALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKV  169 (173)
Q Consensus       117 W~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRi  169 (173)
                      |...|..+..+-.             -..|+.||.+|+.+.. +......+.++
T Consensus        81 ~~~~g~~~~~~g~-------------~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          81 YYRRAASNMALGK-------------FRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHHHTTC-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-------------HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9999999887742             3569999999999853 23334444444

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=2e-07  Score=68.40  Aligned_cols=96  Identities=13%  Similarity=0.124  Sum_probs=80.0

Q ss_pred             HHHHHHHHHhhhhccCChhHHHHHHHHhhhc-cccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931          39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHT-NLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW  117 (173)
Q Consensus        39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~t-nl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW  117 (173)
                      .|++++.++++.      +++.++++..+.. .+    .|..+.+|..+|..+.++|++++|-+.|..|++++|+.+++|
T Consensus         6 ~l~~~Gn~~~~~------g~~~~Ai~~~~kal~~----~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~   75 (201)
T d2c2la1           6 ELKEQGNRLFVG------RKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH   75 (201)
T ss_dssp             HHHHHHHHHHHT------TCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred             HHHHHHHHHHHc------CCHHHHHHHHHHHHHh----CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHH
Confidence            378999999984      6788888877653 33    466799999999999999999999999999999999999999


Q ss_pred             HHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931         118 ALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       118 ~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ..=|..+.++-.             -..|+.+|-+|...+
T Consensus        76 ~~lg~~~~~l~~-------------~~~A~~~~~~al~l~  102 (201)
T d2c2la1          76 FFLGQCQLEMES-------------YDEAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHHHHHTTC-------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCC-------------HHHHHHHHHHHHHhC
Confidence            999999888742             345888888887653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.4e-06  Score=64.86  Aligned_cols=142  Identities=11%  Similarity=0.069  Sum_probs=103.4

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ..+|.+..+.|-++.++..+.+...+ |+.  .+++.   ..+.+|..+      +++.++++.++..--   ..+..+.
T Consensus       241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~---~l~~~~~~~------~~~~~A~~~~~~~~~---~~~~~~~  306 (388)
T d1w3ba_         241 GNLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAYC---NLANALKEK------GSVAEAEDCYNTALR---LCPTHAD  306 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC--HHHHH---HHHHHHHHH------SCHHHHHHHHHHHHH---HCTTCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHH---HHHHHHHHc------CCHHHHHHHHHhhhc---cCCccch
Confidence            34677777778888888888775443 332  33433   235666664      456666666655433   2455678


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-Cc
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ES  160 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~  160 (173)
                      .+...|.++.++|++++|.+.|..|++++|+.+.+|..-|..+..+-.             -..|+.+|-+|+..+. ..
T Consensus       307 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------------~~~A~~~~~~al~l~P~~~  373 (388)
T d1w3ba_         307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-------------LQEALMHYKEAIRISPTFA  373 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC-------------CHHHHHHHHHHHTTCTTCH
T ss_pred             hhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCH
Confidence            889999999999999999999999999999999999999988776632             2469999999999863 45


Q ss_pred             hhhhhHHHHhh
Q psy5931         161 MSRKYLAKVDY  171 (173)
Q Consensus       161 k~Rk~laRiLW  171 (173)
                      .+...|++++.
T Consensus       374 ~a~~~lg~~~~  384 (388)
T d1w3ba_         374 DAYSNMGNTLK  384 (388)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66777787764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=6.2e-07  Score=67.81  Aligned_cols=85  Identities=20%  Similarity=0.194  Sum_probs=69.5

Q ss_pred             CCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHH
Q psy5931          74 LTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHA  153 (173)
Q Consensus        74 F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA  153 (173)
                      ++++++++++..+|.++.++|++++|...|..|++++|+.+.+|...|.....+-.             -..|+.+|-+|
T Consensus        31 ~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~a   97 (259)
T d1xnfa_          31 LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN-------------FDAAYEAFDSV   97 (259)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH-------------HHHhhhhhhHH
Confidence            37899999999999999999999999999999999999999999999998776631             34588888888


Q ss_pred             chhCC-CchhhhhHHHHhh
Q psy5931         154 CRHQK-ESMSRKYLAKVDY  171 (173)
Q Consensus       154 ~~~~~-~~k~Rk~laRiLW  171 (173)
                      +.... ...+...++.+++
T Consensus        98 l~~~p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          98 LELDPTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHH
Confidence            87642 3445555665554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.3e-06  Score=58.55  Aligned_cols=99  Identities=11%  Similarity=0.092  Sum_probs=82.4

Q ss_pred             HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931          39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA  118 (173)
Q Consensus        39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~  118 (173)
                      .|++++.-++..      +.+.++++..+..--   ..|..+++|..+|..+.++|++++|-..|..|+.++|+.+++|.
T Consensus         5 ~l~~~g~~~~~~------g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~   75 (117)
T d1elwa_           5 ELKEKGNKALSV------GNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS   75 (117)
T ss_dssp             HHHHHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHc------CCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHH
Confidence            477888888874      568888887776532   25677899999999999999999999999999999999999999


Q ss_pred             HHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC
Q psy5931         119 LWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE  159 (173)
Q Consensus       119 ~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~  159 (173)
                      .=|.....+.             --..|+.||-+|+..+.+
T Consensus        76 ~~g~~~~~~~-------------~~~~A~~~~~~a~~~~p~  103 (117)
T d1elwa_          76 RKAAALEFLN-------------RFEEAKRTYEEGLKHEAN  103 (117)
T ss_dssp             HHHHHHHHTT-------------CHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHcc-------------CHHHHHHHHHHHHHhCCC
Confidence            8888777664             245799999999988643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.6e-06  Score=59.83  Aligned_cols=115  Identities=5%  Similarity=-0.046  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931          38 EKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW  117 (173)
Q Consensus        38 ~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW  117 (173)
                      .+.++..-+|+..      .++.++++..+..---   .|..++.+..+|..+.++|++++|.+.|..|++++|..+.+|
T Consensus         5 ~~~k~~G~~~~~~------~~y~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~   75 (128)
T d1elra_           5 LKEKELGNDAYKK------KDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY   75 (128)
T ss_dssp             HHHHHHHHHHHHT------TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHc------CCHHHHHHHHHHHHHh---CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHH
Confidence            4677888888874      5677777666443221   345688999999999999999999999999999999999999


Q ss_pred             HHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhHH
Q psy5931         118 ALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLA  167 (173)
Q Consensus       118 ~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~la  167 (173)
                      ...|..+.++....      ..+..-..|+.+|=+|+...+.....+.+.
T Consensus        76 ~~~a~~~~~lg~~~------~~~~~~~~A~~~~~kal~~~~~~~~~~~l~  119 (128)
T d1elra_          76 RQIAKAYARIGNSY------FKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ  119 (128)
T ss_dssp             HHHHHHHHHHHHHH------HHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH------HHhCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            88887776665332      233456778999988887755555444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.6e-05  Score=62.90  Aligned_cols=115  Identities=6%  Similarity=0.053  Sum_probs=85.5

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      ++.++.+-++.+..+-++..++++-.+ +-.-.+|..   -.+.|+..+     ..++.++++..+..--   ..+...+
T Consensus        46 ~~~~~~~~~~~e~~~~Al~~~~~ai~l-nP~~~~a~~---~r~~~l~~l-----~~~~~eal~~~~~al~---~~p~~~~  113 (315)
T d2h6fa1          46 YDYFRAVLQRDERSERAFKLTRDAIEL-NAANYTVWH---FRRVLLKSL-----QKDLHEEMNYITAIIE---EQPKNYQ  113 (315)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHH-CTTCHHHHH---HHHHHHHHT-----TCCHHHHHHHHHHHHH---HCTTCHH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHH-CCCChHHHH---HHHHHHHHh-----CcCHHHHHHHHHHHHH---HHHhhhh
Confidence            456888999999999999999998665 233333432   234455554     2346777777766533   2456688


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF  128 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f  128 (173)
                      .|..+|.++.++|++++|-..|..|+.++|+...+|..=|..+.++-
T Consensus       114 a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~  160 (315)
T d2h6fa1         114 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK  160 (315)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999988887777664

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.9e-05  Score=58.49  Aligned_cols=126  Identities=10%  Similarity=0.011  Sum_probs=91.6

Q ss_pred             cHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCC-----CchhhHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy5931          32 PIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYL-----TKEMTAEFYALKGMLLAQIGRSAEANKAFSA  105 (173)
Q Consensus        32 ~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F-----~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~  105 (173)
                      |-.+.-.++++.+..++....... -..|+++|++++...-..-     ..+.+..+|...|..+.++|++++|-+.+..
T Consensus         8 ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~   87 (170)
T d1p5qa1           8 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK   87 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhh
Confidence            344566778888888887532211 1226777777664433111     1234556677789999999999999999999


Q ss_pred             HHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC-CCchhhhhHHHHh
Q psy5931         106 AVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ-KESMSRKYLAKVD  170 (173)
Q Consensus       106 Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~-~~~k~Rk~laRiL  170 (173)
                      |+.++|+.+++|..=|..+..+-.             -..|+.+|-+|..++ ++...+..|+++.
T Consensus        88 al~~~p~~~~a~~~~g~~~~~~g~-------------~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          88 ALELDSNNEKGLSRRGEAHLAVND-------------FELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             hhhccccchhhhHHHHHHHHHhhh-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999988887776642             356999999999987 5677777887764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.95  E-value=1.2e-05  Score=58.62  Aligned_cols=124  Identities=13%  Similarity=-0.026  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhcccc------CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHH
Q psy5931          33 IVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLK------YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSA  105 (173)
Q Consensus        33 v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~------~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~  105 (173)
                      -.+.-..++|++..++....-. .-..|.+||+++..+.-.      ....+-...+|...|..+.++|++++|-+.|..
T Consensus        13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~   92 (153)
T d2fbna1          13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK   92 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence            3444556788888887631110 012266666666543321      011122345778899999999999999999999


Q ss_pred             HHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHH
Q psy5931         106 AVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKV  169 (173)
Q Consensus       106 Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRi  169 (173)
                      |+.++|+.+++|..=|.....+-.             -..|+.||-+|..++. +...+..+..+
T Consensus        93 al~~~p~~~ka~~~~g~~~~~lg~-------------~~~A~~~~~~al~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          93 VLKIDKNNVKALYKLGVANMYFGF-------------LEEAKENLYKAASLNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cccccchhhhhhHHhHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999998888877741             3569999999999874 45556655544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.3e-05  Score=58.03  Aligned_cols=80  Identities=13%  Similarity=-0.090  Sum_probs=67.6

Q ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ++|+-+.-+|..+.+.|++++|...|..|++++|+.+.+|...|..+.++-  +           -..|+.+|-+|+.+.
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~-----------~~~A~~~~~kal~~~   74 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--C-----------YGYALGDATRAIELD   74 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--C-----------HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhcc--c-----------cchHHHHHHHHHHHc
Confidence            688889999999999999999999999999999999999999999888873  2           356999999999985


Q ss_pred             CCc-hhhhhHHHHh
Q psy5931         158 KES-MSRKYLAKVD  170 (173)
Q Consensus       158 ~~~-k~Rk~laRiL  170 (173)
                      .+. ++...++.++
T Consensus        75 p~~~~a~~~~g~~~   88 (159)
T d1a17a_          75 KKYIKGYYRRAASN   88 (159)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHH
Confidence            443 4555555554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2e-05  Score=59.65  Aligned_cols=78  Identities=13%  Similarity=0.140  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931          39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA  118 (173)
Q Consensus        39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~  118 (173)
                      ++-.++-++++      .+++.++|+..+...      +-.++.+...|.++.++|++++|.+.|..|++++|+.+.+|.
T Consensus         7 ~l~~~g~~~~~------~~d~~~Al~~~~~i~------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~   74 (192)
T d1hh8a_           7 SLWNEGVLAAD------KKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF   74 (192)
T ss_dssp             HHHHHHHHHHH------TTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHH------CCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHH
Confidence            55566777777      467999999887631      224678889999999999999999999999999999999999


Q ss_pred             HHHHhHHhhc
Q psy5931         119 LWGDYMEAQF  128 (173)
Q Consensus       119 ~WG~~~d~~f  128 (173)
                      ..|..+.++.
T Consensus        75 ~~g~~~~~~g   84 (192)
T d1hh8a_          75 QRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhhc
Confidence            9999987775

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.90  E-value=3.1e-05  Score=53.68  Aligned_cols=78  Identities=14%  Similarity=0.068  Sum_probs=65.5

Q ss_pred             HHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHH
Q psy5931          42 QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG  121 (173)
Q Consensus        42 Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG  121 (173)
                      +.+.++++.      +++.++++.++..--   ..|..++.+...|..+.++|++++|...|..|++++|+.+.+|...|
T Consensus        21 ~~g~~~~~~------g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la   91 (112)
T d1hxia_          21 EEGLSMLKL------ANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   91 (112)
T ss_dssp             HHHHHHHHT------TCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHH------hhhHHHHHHHhhhcc---cccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHH
Confidence            457888874      567777777766533   23557899999999999999999999999999999999999999999


Q ss_pred             HhHHhhc
Q psy5931         122 DYMEAQF  128 (173)
Q Consensus       122 ~~~d~~f  128 (173)
                      ......-
T Consensus        92 ~~y~~~g   98 (112)
T d1hxia_          92 VSHTNEH   98 (112)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHCC
Confidence            9988774

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=7e-05  Score=56.05  Aligned_cols=120  Identities=12%  Similarity=0.061  Sum_probs=83.9

Q ss_pred             hHHHHHHHHhhcCCCCC-cHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHh
Q psy5931          15 TSVCLDSLFRLYTIPSV-PIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQI   93 (173)
Q Consensus        15 ~~vc~~~L~ki~~lp~i-~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~L   93 (173)
                      .++++..++++..-+.. +-..+- -....+.||...      +++.++++..+..--   -.|..++.+...|..+.++
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~-~~~~~G~~y~~~------g~~~~A~~~~~~al~---l~p~~~~a~~~lg~~~~~~   84 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQ-LLYERGVLYDSL------GLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQA   84 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHH-HHHHHHHHHHHT------TCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHH-HHHHHHHHHHHC------CCHHHHHHHHHHhhc---cCCCCHHHHhhhchHHHHH
Confidence            35677777776654332 222221 124568888875      355555555443321   1345688999999999999


Q ss_pred             CCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          94 GRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        94 g~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      |++++|.+.|..|+.++|+.+.+|..-|..+..+..             -..|+.+|-.|++..
T Consensus        85 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~  135 (259)
T d1xnfa_          85 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR-------------DKLAQDDLLAFYQDD  135 (259)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh-------------HHHHHHHHHHHHhhc
Confidence            999999999999999999999999999988766531             245777887777764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.87  E-value=6e-05  Score=55.03  Aligned_cols=120  Identities=11%  Similarity=0.020  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhcccc------CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccc
Q psy5931          38 EKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLK------YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMH  110 (173)
Q Consensus        38 ~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~------~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~  110 (173)
                      ..+++.+..++...... .-..+.+||+..+...-.      ....+..+.++..+|..+.++|++++|-..|..|++++
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  107 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  107 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh
Confidence            34566677776532110 012366666655433221      11246678888999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHHh
Q psy5931         111 DVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKVD  170 (173)
Q Consensus       111 ~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRiL  170 (173)
                      |+.+++|..=|.-..++..             -..|+.+|-+|+.++. +...+..|.++.
T Consensus       108 p~~~~a~~~~g~~~~~l~~-------------~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1         108 PSNTKALYRRAQGWQGLKE-------------YDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             TTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhhhhHHHhHHHHHHHccC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999988888876631             3579999999999873 445566666653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.82  E-value=2.7e-05  Score=57.32  Aligned_cols=129  Identities=9%  Similarity=-0.033  Sum_probs=89.4

Q ss_pred             CCCCcHHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhcccc-----CCCchhhHHHHHHHHHHHHHhCCchHHHH
Q psy5931          28 IPSVPIVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLK-----YLTKEMTAEFYALKGMLLAQIGRSAEANK  101 (173)
Q Consensus        28 lp~i~v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~-----~F~~~qkaE~~~LKG~fl~~Lg~~deA~~  101 (173)
                      +++-|-.+.-.+++|.+..++...... .-..|.++|++++.....     ....+..+-+|...|..+.++|++++|-.
T Consensus         6 m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~   85 (168)
T d1kt1a1           6 MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE   85 (168)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchh
Confidence            333444455678889999888853211 122377777776543321     11223456677789999999999999999


Q ss_pred             HHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHH
Q psy5931         102 AFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKV  169 (173)
Q Consensus       102 ~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRi  169 (173)
                      .|..|+.++|+.+++|..=|..+..+-             =-..|+.||-+|..++. +..+...+.++
T Consensus        86 ~~~~al~l~p~~~~a~~~~~~~~~~l~-------------~~~~A~~~~~~al~l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          86 CCDKALGLDSANEKGLYRRGEAQLLMN-------------EFESAKGDFEKVLEVNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hhhhhhhcccchHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999998888766663             13679999999998863 33344444443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.00011  Score=56.05  Aligned_cols=112  Identities=11%  Similarity=0.117  Sum_probs=84.9

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ..+|.+-.+.|-++-++..+.+......-. .++   ....+.|+...      +++.++++..+..--   ..|..++.
T Consensus       275 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~---~~~l~~~~~~~------~~~~~A~~~~~~al~---~~p~~~~~  341 (388)
T d1w3ba_         275 CNLANALKEKGSVAEAEDCYNTALRLCPTH-ADS---LNNLANIKREQ------GNIEEAVRLYRKALE---VFPEFAAA  341 (388)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHH---HHHHHHHHHTT------TCHHHHHHHHHHHTT---SCTTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhccCCcc-chh---hhHHHHHHHHC------CCHHHHHHHHHHHHH---hCCCCHHH
Confidence            456778888888888888888865542211 112   23446677764      567788887776422   13456889


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ  127 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~  127 (173)
                      +...|.++.++|++++|-+.|..|++++|+.+.+|..-|..+.++
T Consensus       342 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999887665

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00015  Score=50.27  Aligned_cols=105  Identities=14%  Similarity=0.053  Sum_probs=82.8

Q ss_pred             HHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931           5 FGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY   83 (173)
Q Consensus         5 fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~   83 (173)
                      -|..+-+.|=++-++..+++...+ |+-  .+++..   .+.||+.+      +++.++++.++..--   -.+.-++.|
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~--~~~~~~---~a~~~~~~------~~~~~A~~~~~~al~---~~p~~~~~~   74 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSN---RSAAYAKK------GDYQKAYEDGCKTVD---LKPDWGKGY   74 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH---HHHHHHHH------TCHHHHHHHHHHHHH---HCTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcc--hhhhhc---cccccccc------ccccccchhhhhHHH---hccchhhHH
Confidence            467778889999999999987553 322  234333   38899985      567788887776654   245677899


Q ss_pred             HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHh
Q psy5931          84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDY  123 (173)
Q Consensus        84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~  123 (173)
                      ...|..+..+|++++|-..|..|+.++|+.+..|...++.
T Consensus        75 ~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          75 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999877764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.71  E-value=3.4e-05  Score=56.10  Aligned_cols=106  Identities=16%  Similarity=0.044  Sum_probs=75.9

Q ss_pred             HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHh----------CCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931          59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQI----------GRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF  128 (173)
Q Consensus        59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~L----------g~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f  128 (173)
                      +.++++..+..--   ..|..++.+...|.++..+          +..++|-+.|..|+.++|+.+.+|..+|..+..+.
T Consensus        13 fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          13 FEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence            3444444444433   3688889999999998755          44589999999999999999999999999887764


Q ss_pred             CCCCCCCCCchhhhHHHHHHHHHHHchhC-CCchhhhhHHHH
Q psy5931         129 TNPSPPGSAPNMVLGVFAVTCFMHACRHQ-KESMSRKYLAKV  169 (173)
Q Consensus       129 ~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~-~~~k~Rk~laRi  169 (173)
                      ...+  ........-..|+.||-+|+..+ ++...++.|.+.
T Consensus        90 ~~~~--~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          90 FLTP--DETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHCC--CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cchh--hHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence            3221  00123345578999999999886 455566666543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00031  Score=47.27  Aligned_cols=86  Identities=10%  Similarity=0.041  Sum_probs=63.0

Q ss_pred             CcHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc
Q psy5931          31 VPIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM  109 (173)
Q Consensus        31 i~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql  109 (173)
                      +...|||    +.++.+++...... -.-++++|++.....-   ....+++.+..-|..+.++|++++|...|..|+.+
T Consensus         3 Lsaddc~----~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~---~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           3 LTAEDSF----ELGKVAYTEADYYHTELWMEQALRQLDEGEI---STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             CCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHH----HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc---cCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3456777    55777777421110 1126667776655444   23467899999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHh
Q psy5931         110 HDVMVKAWALWGDY  123 (173)
Q Consensus       110 ~~~~~kaW~~WG~~  123 (173)
                      +|+.+.++..=+.+
T Consensus        76 ~P~~~~a~~Nl~~~   89 (95)
T d1tjca_          76 DPEHQRANGNLKYF   89 (95)
T ss_dssp             CTTCHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHH
Confidence            99999999876655

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=8e-05  Score=57.55  Aligned_cols=85  Identities=16%  Similarity=0.114  Sum_probs=68.8

Q ss_pred             hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCC
Q psy5931          57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGS  136 (173)
Q Consensus        57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~  136 (173)
                      +++.++++.++..--   ..+..++.+...|.++.++|++++|.+.|..|++++|+.+.+|..=|..+.++-.       
T Consensus       186 ~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-------  255 (323)
T d1fcha_         186 GEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA-------  255 (323)
T ss_dssp             TCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------
T ss_pred             HHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCC-------
Confidence            456677777665422   1245689999999999999999999999999999999999999999988887731       


Q ss_pred             CchhhhHHHHHHHHHHHchhC
Q psy5931         137 APNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       137 ~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                            -..|+..|.+|+..+
T Consensus       256 ------~~~A~~~~~~al~l~  270 (323)
T d1fcha_         256 ------HREAVEHFLEALNMQ  270 (323)
T ss_dssp             ------HHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHhC
Confidence                  356899999998864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00042  Score=53.32  Aligned_cols=99  Identities=14%  Similarity=0.019  Sum_probs=78.4

Q ss_pred             cHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931          32 PIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD  111 (173)
Q Consensus        32 ~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~  111 (173)
                      ...++|    ++++++++.      +++.++++..+..--   ..|.-++.+...|.++..+|++++|...|..|+.++|
T Consensus        18 ~~~~~~----~~g~~~~~~------g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p   84 (323)
T d1fcha_          18 DHPQPF----EEGLRRLQE------GDLPNAVLLFEAAVQ---QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP   84 (323)
T ss_dssp             TCSSHH----HHHHHHHHT------TCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             chHHHH----HHHHHHHHc------CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc
Confidence            444555    579999985      578888888776532   2455688999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931         112 VMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus       112 ~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +.+..|..-|..+..+-             --..|+.+|-++.+.
T Consensus        85 ~~~~~~~~la~~~~~~~-------------~~~~A~~~~~~~~~~  116 (323)
T d1fcha_          85 DNQTALMALAVSFTNES-------------LQRQACEILRDWLRY  116 (323)
T ss_dssp             TCHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccc-------------cccccccchhhHHHh
Confidence            99999999888765542             134678888887765

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.37  E-value=0.0015  Score=47.01  Aligned_cols=76  Identities=12%  Similarity=0.132  Sum_probs=60.6

Q ss_pred             HHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931          43 QVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD  122 (173)
Q Consensus        43 q~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~  122 (173)
                      .+-||+++      .++.++++..+.. |..  .|...+-|..+|..+..+|++++|...|..|++++|+.+.++..++.
T Consensus        73 la~~~~~l------~~~~~Al~~~~~a-l~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~  143 (153)
T d2fbna1          73 LATCYNKN------KDYPKAIDHASKV-LKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  143 (153)
T ss_dssp             HHHHHHHT------TCHHHHHHHHHHH-HHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHh------cccchhhhhhhcc-ccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            46677776      4677777776664 222  35557789999999999999999999999999999999999988877


Q ss_pred             hHHhh
Q psy5931         123 YMEAQ  127 (173)
Q Consensus       123 ~~d~~  127 (173)
                      ...++
T Consensus       144 ~~~kl  148 (153)
T d2fbna1         144 CVNKL  148 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00038  Score=50.13  Aligned_cols=78  Identities=12%  Similarity=0.001  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-  158 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-  158 (173)
                      |+=+.-+|..+.+.|++++|-+.|..|+.++|+.+.+|..=|....++.             --..|+.+|-+|+..+. 
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~-------------~~~~Ai~~~~~al~l~p~   70 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ-------------QPEQALADCRRALELDGQ   70 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-------------CHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhh-------------hhhhhhHHHHHHHHhCCC
Confidence            3446688999999999999999999999999999999999888766653             14679999999999743 


Q ss_pred             CchhhhhHHHHh
Q psy5931         159 ESMSRKYLAKVD  170 (173)
Q Consensus       159 ~~k~Rk~laRiL  170 (173)
                      +.++...++.++
T Consensus        71 ~~~a~~~lg~~~   82 (201)
T d2c2la1          71 SVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            445555566654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.17  E-value=0.00034  Score=48.09  Aligned_cols=62  Identities=23%  Similarity=0.209  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ..-.|..+.+.|++++|-..|..++..+|+.+.+|...|....++-.             -..|+.+|-+|+...
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-------------~~~A~~~~~~al~~~   80 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK-------------DGLAIIALNHARMLD   80 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhh-------------HHHhhcccccccccc
Confidence            34579999999999999999999999999999999999998766631             357999999999885

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.002  Score=51.40  Aligned_cols=135  Identities=4%  Similarity=-0.092  Sum_probs=93.0

Q ss_pred             HHHHHHHhCCC-hHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           4 QFGKIARKHHL-TSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         4 ~fa~iARkh~l-~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      .-|.+-.+.|- .+-++..+.+.-.+ +-.-.+++..+   +.|+..+      +++.++++.++..--   ..+.....
T Consensus        82 ~r~~~l~~l~~~~~eal~~~~~al~~-~p~~~~a~~~~---~~~~~~l------~~~~eAl~~~~kal~---~dp~n~~a  148 (315)
T d2h6fa1          82 FRRVLLKSLQKDLHEEMNYITAIIEE-QPKNYQVWHHR---RVLVEWL------RDPSQELEFIADILN---QDAKNYHA  148 (315)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHHHHHH---HHHHHHH------TCCTTHHHHHHHHHH---HCTTCHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHH-HHhhhhHHHHH---hHHHHhh------ccHHHHHHHHhhhhh---hhhcchHH
Confidence            34555566654 67777777776443 12223444443   3455554      345566666665533   24556789


Q ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931          83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK  158 (173)
Q Consensus        83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~  158 (173)
                      +.-+|.++.++|++++|.+.|..|++++|+...+|..=|..+.++-..       .+......|+.+|.+|+....
T Consensus       149 ~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~-------~~~~~~~~ai~~~~~al~~~P  217 (315)
T d2h6fa1         149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY-------NDRAVLEREVQYTLEMIKLVP  217 (315)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS-------CSHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc-------chhhhhHHhHHHHHHHHHhCC
Confidence            999999999999999999999999999999999998777766655322       233456789999999998754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00048  Score=48.31  Aligned_cols=79  Identities=10%  Similarity=-0.141  Sum_probs=64.5

Q ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ++|.=+.-+|..+.+.|++++|.+.|..|++++|+.+.+|...|..+.++..             -..|+.+|-+|+..+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~-------------~~~A~~~~~~al~l~   68 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD-------------YNKCRELCEKAIEVG   68 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCc-------------hHHHHHHHHHHHHhC
Confidence            5677788899999999999999999999999999999999999999888852             356899999998765


Q ss_pred             C-CchhhhhHHHH
Q psy5931         158 K-ESMSRKYLAKV  169 (173)
Q Consensus       158 ~-~~k~Rk~laRi  169 (173)
                      . .......++++
T Consensus        69 ~~~~~~~~~~a~~   81 (128)
T d1elra_          69 RENREDYRQIAKA   81 (128)
T ss_dssp             HHSTTCHHHHHHH
T ss_pred             cccHHHHHHHHHH
Confidence            3 33444445554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.05  E-value=0.0063  Score=43.99  Aligned_cols=109  Identities=10%  Similarity=0.020  Sum_probs=73.1

Q ss_pred             HHHHHHhCCChHHHHHHHHhhc----CCCCCc--HHHHHHHHH-----HHHHHHhhhhccCChhHHHHHHHHhhhccccC
Q psy5931           5 FGKIARKHHLTSVCLDSLFRLY----TIPSVP--IVDCFEKIR-----QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKY   73 (173)
Q Consensus         5 fa~iARkh~l~~vc~~~L~ki~----~lp~i~--v~daF~Klr-----Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~   73 (173)
                      -|..+-+.|-++.|+...++.-    ..+.++  ..+.+.-++     ..+.||+.+      +++.++++..+..--  
T Consensus        21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l------~~~~~Ai~~~~~al~--   92 (168)
T d1kt1a1          21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL------REYTKAVECCDKALG--   92 (168)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHh------hhcccchhhhhhhhh--
Confidence            4556667777777777755522    222222  222222222     246788886      456677766665433  


Q ss_pred             CCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931          74 LTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD  122 (173)
Q Consensus        74 F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~  122 (173)
                       ..|....-+..+|..+..+|++++|-..|..|++++|+.+.++..=+.
T Consensus        93 -l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          93 -LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM  140 (168)
T ss_dssp             -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             -cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence             135566788999999999999999999999999999998877754443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0057  Score=45.44  Aligned_cols=90  Identities=18%  Similarity=0.121  Sum_probs=67.5

Q ss_pred             HHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHH
Q psy5931           6 GKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYAL   85 (173)
Q Consensus         6 a~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~L   85 (173)
                      |..+...|-++-|+...++|.+ |+   .+++.   .-+.||+.+      +++.++++..+..-=   ..+.-+..|..
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~-~~---~~~~~---nlG~~~~~~------g~~~~A~~~~~kAl~---ldp~~~~a~~~   75 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQD-PH---SRICF---NIGCMYTIL------KNMTEAEKAFTRSIN---RDKHLAVAYFQ   75 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSS-CC---HHHHH---HHHHHHHHT------TCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCC-CC---HHHHH---HHHHHHHHc------CCchhHHHHHHHHHH---HhhhhhhhHHH
Confidence            6677888999999999998743 22   23433   458899886      456666665554422   24667999999


Q ss_pred             HHHHHHHhCCchHHHHHHHHHHccch
Q psy5931          86 KGMLLAQIGRSAEANKAFSAAVQMHD  111 (173)
Q Consensus        86 KG~fl~~Lg~~deA~~~F~~Avql~~  111 (173)
                      +|..+.++|++++|-+.|..|+...+
T Consensus        76 ~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          76 RGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            99999999999999999999997643

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.89  E-value=0.00027  Score=51.08  Aligned_cols=65  Identities=12%  Similarity=0.025  Sum_probs=52.4

Q ss_pred             HHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          90 LAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        90 l~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      +.+++.+|+|-+.|..|++++|+.+.+|..||..+-.+-.-..   ..........|+.+|-+|++.+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~---~~e~~~~~~~Ai~~~~kAl~l~   71 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS---ISDAKQMIQEAITKFEEALLID   71 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHHHHHHHhc
Confidence            5788899999999999999999999999999998876532111   0124456788999999999984

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0035  Score=44.11  Aligned_cols=70  Identities=16%  Similarity=0.068  Sum_probs=56.3

Q ss_pred             hhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHh
Q psy5931          56 KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEA  126 (173)
Q Consensus        56 ~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~  126 (173)
                      ++++.+|+++++..--.. ..+.+++.+..-|..+.++|++++|-+.|..|++++|+.+++...=+...++
T Consensus        49 ~~d~~~Ai~~l~~~l~~~-~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          49 NDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             HHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            567889999998743222 3466778888889999999999999999999999999999888665544443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.67  E-value=0.0037  Score=45.00  Aligned_cols=71  Identities=10%  Similarity=-0.036  Sum_probs=57.1

Q ss_pred             HHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHH
Q psy5931          42 QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG  121 (173)
Q Consensus        42 Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG  121 (173)
                      ..+.||.++      +++.++++..+..--   -.+..++.+..+|..+.++|++++|-+.|..|+.++|+.+.+...=+
T Consensus        82 nla~~~~~~------~~~~~Ai~~~~~al~---~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1          82 NIGACKLKM------SDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHT------TCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHhh------cccchhhhhhhhhhh---hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            357888886      567788887776533   24667899999999999999999999999999999998777665433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0021  Score=46.99  Aligned_cols=109  Identities=11%  Similarity=0.034  Sum_probs=73.3

Q ss_pred             HHHHHhCCChHHHHHHHHhhcC-CC---CC--c----HHHHHHHHH-HHHHHHhhhhccCChhHHHHHHHHhhhccccCC
Q psy5931           6 GKIARKHHLTSVCLDSLFRLYT-IP---SV--P----IVDCFEKIR-QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYL   74 (173)
Q Consensus         6 a~iARkh~l~~vc~~~L~ki~~-lp---~i--~----v~daF~Klr-Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F   74 (173)
                      |...-+.|=++-++....+... +|   ..  +    ....+.++. --+-||+.+      +++.++++.++..--   
T Consensus        20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~------~~~~~A~~~~~~al~---   90 (170)
T d1p5qa1          20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL------QAFSAAIESCNKALE---   90 (170)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHH---
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhh------hhcccccchhhhhhh---
Confidence            4455566677777776655322 12   11  1    122233332 246677774      567777777766544   


Q ss_pred             CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHh
Q psy5931          75 TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDY  123 (173)
Q Consensus        75 ~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~  123 (173)
                      -.|..++.+..+|..+..+|++++|-+.|..|+.++|+.+.+...=+..
T Consensus        91 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          91 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  139 (170)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            2466788999999999999999999999999999999877776554443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.54  E-value=0.0091  Score=42.47  Aligned_cols=111  Identities=14%  Similarity=0.044  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccC--CCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc
Q psy5931          33 IVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKY--LTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM  109 (173)
Q Consensus        33 v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~--F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql  109 (173)
                      |.+++..+.+ +.-+++..... .-..+.++|++-.+..-.+  -.....+..|...|..+.++|++++|.+.|..|+.+
T Consensus         6 ~a~a~~~l~~-g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           6 VVGAYLALSD-AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence            5667766544 55555421110 0122666666554433221  123457889999999999999999999999999998


Q ss_pred             chhh-----------HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931         110 HDVM-----------VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus       110 ~~~~-----------~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .+..           .+++..=|.-+..+..             -..|+.+|-+|+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~-------------~eeA~~~~~~Al~l~  130 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGR-------------GAEAMPEFKKVVEMI  130 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhHHHHhhhHHHHHHHHH-------------HHHHHHHHHHHHHhh
Confidence            7642           2233333444444431             357999999999763

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.067  Score=41.30  Aligned_cols=129  Identities=9%  Similarity=0.063  Sum_probs=82.3

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF   82 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~   82 (173)
                      ..+|..-.++|-.+-+...+.+.-..+......++.+.   +++....      +++.++.+++....-   ..+...+.
T Consensus       103 ~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~---~~~~~~~------~~~~~ar~i~~~al~---~~~~~~~~  170 (308)
T d2onda1         103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY---MKFARRA------EGIKSGRMIFKKARE---DARTRHHV  170 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHH---HHHHHHH------HCHHHHHHHHHHHHT---STTCCTHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHH---HHHHHHc------CChHHHHHHHHHHHH---hCCCcHHH
Confidence            35677888888888898888887776555444444332   3334332      234444455444322   12334566


Q ss_pred             HHHHHHHHHH-hCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931          83 YALKGMLLAQ-IGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH  156 (173)
Q Consensus        83 ~~LKG~fl~~-Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~  156 (173)
                      +...|.+... .|+.+.|-+.|..++..+|+.+..|..+++|+.+...             -.+|-..|=+|++.
T Consensus       171 ~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~-------------~~~aR~~fe~ai~~  232 (308)
T d2onda1         171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE-------------DNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-------------HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHHh
Confidence            7677776555 4677888889999988888888888888888776531             13456666666664

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.79  E-value=0.0029  Score=45.22  Aligned_cols=107  Identities=13%  Similarity=0.106  Sum_probs=65.1

Q ss_pred             HHHHHhCCChHHHHHHHHhhcC-CCCCcH----------HHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccc-c
Q psy5931           6 GKIARKHHLTSVCLDSLFRLYT-IPSVPI----------VDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNL-K   72 (173)
Q Consensus         6 a~iARkh~l~~vc~~~L~ki~~-lp~i~v----------~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl-~   72 (173)
                      |.+.-..|-++-++...++.-. .|+++-          ..++.   .-+.||..+.... .-..++++|.+.+.+.- .
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~---nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHA---GLAEALAGLRSFDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHH---HHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence            4444455778888887777543 122221          12222   3466776653211 11226666666554322 2


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHH
Q psy5931          73 YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK  115 (173)
Q Consensus        73 ~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k  115 (173)
                      --..+-.+..+..+|..+.++|++|+|...|..|+++.|..+.
T Consensus        93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            2223344556888999999999999999999999999876443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.047  Score=40.00  Aligned_cols=105  Identities=12%  Similarity=-0.002  Sum_probs=70.2

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCC-CCcHHHHHHHHHHHHHHHhhhhccCC-hhHHHHHHHHhhhccccCCCchhhH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIP-SVPIVDCFEKIRQQVKCYLQMAALDG-KNQLQEGLEVIEHTNLKYLTKEMTA   80 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp-~i~v~daF~KlrEq~kc~l~~~~~~~-~~el~~gL~vi~~tnl~~F~~~qka   80 (173)
                      ...+.+....|-++.+...+.+...+. .-+.... ......+.+|+....... ...+..++++....+.    ++..+
T Consensus       217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~  291 (366)
T d1hz4a_         217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIARAQILLGEFEPAEIVLEELNENARSLRL----MSDLN  291 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----HHHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc----ChHHH
Confidence            345677788899999999988866542 2221111 223345777777521110 1114444555444443    67789


Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDV  112 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~  112 (173)
                      +.+.+.|.++.++|++++|.+.|..|+.+.+.
T Consensus       292 ~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         292 RNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999998664

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.47  E-value=0.046  Score=40.43  Aligned_cols=65  Identities=12%  Similarity=-0.038  Sum_probs=54.7

Q ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHc
Q psy5931          77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHAC  154 (173)
Q Consensus        77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~  154 (173)
                      ++..+.+..+|..+.++|++++|...+..++.++|....+|...+.-+.+...             -..|+.+|-++.
T Consensus        64 ~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr-------------~~eAl~~y~~~~  128 (179)
T d2ff4a2          64 EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR-------------QSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC-------------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC-------------HHHHHHHHHHHH
Confidence            44567788899999999999999999999999999999999998888877742             245777887764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.10  E-value=0.058  Score=41.40  Aligned_cols=103  Identities=13%  Similarity=0.080  Sum_probs=64.6

Q ss_pred             hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhcc-----CChhH----HHHHHHHhhhcccc
Q psy5931           2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAAL-----DGKNQ----LQEGLEVIEHTNLK   72 (173)
Q Consensus         2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~-----~~~~e----l~~gL~vi~~tnl~   72 (173)
                      +..+|.+-++.|-++-++..+++...     +..-.-.....+.++..++..     .+..+    ++.++++....+  
T Consensus        80 ~~~~g~~y~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~--  152 (290)
T d1qqea_          80 YVEAYKCFKSGGNSVNAVDSLENAIQ-----IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--  152 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHhhH-----HhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC--
Confidence            35668888888888888888876432     111111122222222222211     01111    455555554443  


Q ss_pred             CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh
Q psy5931          73 YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM  113 (173)
Q Consensus        73 ~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~  113 (173)
                        .+.+.++.+...|.++.++|++++|.+.|..++...+..
T Consensus       153 --~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         153 --SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             --chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence              356778899999999999999999999999999887653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.031  Score=40.48  Aligned_cols=63  Identities=11%  Similarity=0.076  Sum_probs=53.3

Q ss_pred             ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHH
Q psy5931          55 GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWAL  119 (173)
Q Consensus        55 ~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~  119 (173)
                      .+.+.++|+.+++..-=.  +|+.+.+-++.-|+-+.++|++++|-+.+..+++++|+...++..
T Consensus        50 ~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          50 DVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             CHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            466789999999876422  466777899999999999999999999999999999998888753

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=94.76  E-value=0.032  Score=44.04  Aligned_cols=67  Identities=15%  Similarity=0.136  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHH
Q psy5931          56 KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYME  125 (173)
Q Consensus        56 ~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d  125 (173)
                      .+++.++++.++..==   ..|..++....-|.++...|+.|+|.+.|..+++++|+...+|...+..+.
T Consensus         9 ~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1           9 EGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   75 (264)
T ss_dssp             TTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            4567788877776643   468889999999999999999999999999999999999999998887754

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.03  Score=41.11  Aligned_cols=38  Identities=26%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM  113 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~  113 (173)
                      ++..+|+..++|.+....|++++|.+.|..|+...|..
T Consensus         8 ~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~   45 (366)
T d1hz4a_           8 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG   45 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCC
Confidence            45678888888888888888888888888888887754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.69  E-value=0.48  Score=35.90  Aligned_cols=118  Identities=15%  Similarity=0.129  Sum_probs=70.4

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCCC--CCcHHHHHHHHHHHHHHHhhhhccCChhH----HHHHHHHhhhccccCCCc
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTIP--SVPIVDCFEKIRQQVKCYLQMAALDGKNQ----LQEGLEVIEHTNLKYLTK   76 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~lp--~i~v~daF~KlrEq~kc~l~~~~~~~~~e----l~~gL~vi~~tnl~~F~~   76 (173)
                      .+.|.+-+..|-.+-|+....+...+-  .-.-.++-.-+.+.+.||.++..   +++    ++.++++..+.+    ..
T Consensus        41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~---~~~A~~~~~~a~~~~~~~~----~~  113 (290)
T d1qqea_          41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTHRG----QF  113 (290)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTT----CH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHhhHHhhhcc----cc
Confidence            345667777887777888877754321  00112333344566888888632   333    444445443322    23


Q ss_pred             hhhHHHHHHHHH-HHHHhCCchHHHHHHHHHHccchh------hHHHHHHHHHhHHhh
Q psy5931          77 EMTAEFYALKGM-LLAQIGRSAEANKAFSAAVQMHDV------MVKAWALWGDYMEAQ  127 (173)
Q Consensus        77 ~qkaE~~~LKG~-fl~~Lg~~deA~~~F~~Avql~~~------~~kaW~~WG~~~d~~  127 (173)
                      .+-+..+..-|. +...+|++++|.+.|..|+.+.+.      ....|...|.+.-.+
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~  171 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD  171 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHc
Confidence            333444444454 456789999999999999988553      456677777665444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.67  E-value=0.15  Score=39.26  Aligned_cols=135  Identities=7%  Similarity=0.001  Sum_probs=83.4

Q ss_pred             HHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCCchhhHHHHH
Q psy5931           6 GKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTKEMTAEFYA   84 (173)
Q Consensus         6 a~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~~qkaE~~~   84 (173)
                      ...-.+..+.+-++....++-.+ +.+-.+++...++-+..+...++.. ..+++.++|+.++..--   ..+.....+.
T Consensus        36 ~~~~~~~~~~~~al~~~~~~l~~-~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~---~~pk~~~~~~  111 (334)
T d1dcea1          36 FQKRQAGELDESVLELTSQILGA-NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWH  111 (334)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHH
T ss_pred             HHHHhcccccHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH---hCCCcHHHHH
Confidence            33445566677777777776542 2233455544454444443322111 13457777877766543   2455677889


Q ss_pred             HHHHHHHHhCC--chHHHHHHHHHHccchhhHHHHH-HHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          85 LKGMLLAQIGR--SAEANKAFSAAVQMHDVMVKAWA-LWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        85 LKG~fl~~Lg~--~deA~~~F~~Avql~~~~~kaW~-~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      .+|..+..+|+  .++|-..|..+++++|....+|. .-|......  .           .-..|+.+|-+++..+
T Consensus       112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~Al~~~~~~i~~~  174 (334)
T d1dcea1         112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA--V-----------APAEELAFTDSLITRN  174 (334)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC--C-----------CHHHHHHHHHTTTTTT
T ss_pred             HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhc--c-----------ccHHHHHHHHHHHHcC
Confidence            99999999987  57999999999999998877774 333222211  1           1356777777777764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.012  Score=38.97  Aligned_cols=74  Identities=9%  Similarity=-0.256  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC
Q psy5931          80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE  159 (173)
Q Consensus        80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~  159 (173)
                      ++=..-.|....+.|++++|-..|..|+.+.|..+..|...+..++.+-.-.      ....=-..|+.+|-+|...+.+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~------~~~g~~~~A~~~y~~aL~l~P~   78 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAV------YQQGDLDKALLLTKKLLELDPE   78 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH------HHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHH------HhcCChHHHHHHHHHHHHhCcC
Confidence            3445567999999999999999999999998876555544444444432100      0000136799999999998543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.098  Score=43.82  Aligned_cols=76  Identities=8%  Similarity=0.027  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931          81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKES  160 (173)
Q Consensus        81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~  160 (173)
                      ..+.-.|.++...|++++|...|..|+++.|+.+.+|-.=|........             -..|+.+|.+|+....+.
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~-------------~~~A~~~y~ral~~~~~~  219 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGD-------------HLTTIFYYCRSIAVKFPF  219 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHSSSBCC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhCCCCC
Confidence            3455679999999999999999999999999999999988888765531             356999999998765432


Q ss_pred             -hhhhhHHHH
Q psy5931         161 -MSRKYLAKV  169 (173)
Q Consensus       161 -k~Rk~laRi  169 (173)
                       .+|.-|.++
T Consensus       220 ~~a~~nL~~~  229 (497)
T d1ya0a1         220 PAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence             344444443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.36  E-value=0.66  Score=35.32  Aligned_cols=130  Identities=8%  Similarity=-0.020  Sum_probs=81.6

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE   81 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE   81 (173)
                      +.++...+++|-.+-+...+.+.-.. |..+  +.+..   .+.-....     .++...+..+.+..-- .  -++..+
T Consensus       138 ~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~--~~~~~---~a~~e~~~-----~~~~~~a~~i~e~~l~-~--~p~~~~  204 (308)
T d2onda1         138 IQYMKFARRAEGIKSGRMIFKKAREDARTRH--HVYVT---AALMEYYC-----SKDKSVAFKIFELGLK-K--YGDIPE  204 (308)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT--HHHHH---HHHHHHHT-----SCCHHHHHHHHHHHHH-H--HTTCHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCcH--HHHHH---HHHHHHHh-----ccCHHHHHHHHHHHHH-h--hhhhHH
Confidence            67888899998899999999986554 3322  22221   11111110     0112233333332211 1  244578


Q ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHccchh----hHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931          82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDV----MVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ  157 (173)
Q Consensus        82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~----~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~  157 (173)
                      ++.--+.|+.+.|+.++|-..|..|+..+|.    ....|..|..|=....  +           ..++..+|=.+....
T Consensus       205 ~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G--~-----------~~~~~~~~~r~~~~~  271 (308)
T d2onda1         205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG--D-----------LASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS--C-----------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcC--C-----------HHHHHHHHHHHHHHC
Confidence            8999999999999999999999999998763    4568999999954442  1           234566666666554


Q ss_pred             C
Q psy5931         158 K  158 (173)
Q Consensus       158 ~  158 (173)
                      .
T Consensus       272 ~  272 (308)
T d2onda1         272 R  272 (308)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.95  E-value=0.58  Score=35.65  Aligned_cols=108  Identities=9%  Similarity=-0.030  Sum_probs=69.8

Q ss_pred             HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCC-CCCCCC
Q psy5931          59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNP-SPPGSA  137 (173)
Q Consensus        59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~-~~~~~~  137 (173)
                      +.+++..++..--.+  +......+.+.|..+...|..++|-+.|..+++++|+...+|...|.....+-.-+ +...-.
T Consensus       125 ~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~  202 (334)
T d1dcea1         125 WARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (334)
T ss_dssp             HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             HHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            444554444432222  22334456788999999999999999999999999999999999999988876432 111222


Q ss_pred             chhhhHHHHHHHHHHHchhCCCchhhhhHHH
Q psy5931         138 PNMVLGVFAVTCFMHACRHQKESMSRKYLAK  168 (173)
Q Consensus       138 ~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~laR  168 (173)
                      +.+......+.++..+...+....+-....+
T Consensus       203 ~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~  233 (334)
T d1dcea1         203 LPENVLLKELELVQNAFFTDPNDQSAWFYHR  233 (334)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred             HhHHhHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            3344455555555555555444444444333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.28  E-value=0.65  Score=38.51  Aligned_cols=55  Identities=7%  Similarity=0.024  Sum_probs=50.8

Q ss_pred             chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCC
Q psy5931          76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTN  130 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~  130 (173)
                      .|..+..|..-|.+....|+..+|-..|..|+.+.|..+.||..-+...++....
T Consensus       182 ~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhh
Confidence            5778899999999999999999999999999999999999999999988887644

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.88  E-value=0.43  Score=32.74  Aligned_cols=81  Identities=2%  Similarity=-0.200  Sum_probs=58.7

Q ss_pred             chhhHHHHHHHHHHHHHhCC---chHHHHHHHHHHccchhh--HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHH
Q psy5931          76 KEMTAEFYALKGMLLAQIGR---SAEANKAFSAAVQMHDVM--VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCF  150 (173)
Q Consensus        76 ~~qkaE~~~LKG~fl~~Lg~---~deA~~~F~~Avql~~~~--~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~Cy  150 (173)
                      .|..++.+..-|.+|.+.++   .++|-+.|..++..+|+.  +.+|..=|.-+.++-.             -..|+.+|
T Consensus        29 ~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~-------------~~~A~~~~   95 (122)
T d1nzna_          29 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-------------YEKALKYV   95 (122)
T ss_dssp             SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC-------------HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh-------------hHHHHHHH
Confidence            34566788889999977554   456999999999998754  4588888877766631             35699999


Q ss_pred             HHHchhCCC-chhhhhHHHH
Q psy5931         151 MHACRHQKE-SMSRKYLAKV  169 (173)
Q Consensus       151 LqA~~~~~~-~k~Rk~laRi  169 (173)
                      -+|...+.+ ..++.....|
T Consensus        96 ~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          96 RGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhCcCCHHHHHHHHHH
Confidence            999998643 4566655544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.34  E-value=4.3  Score=29.03  Aligned_cols=95  Identities=7%  Similarity=-0.046  Sum_probs=64.5

Q ss_pred             hHHHHHHHhCCChHHHHHHHHhhcCC------CCCc----HHH-------HHHH-HHHHHHHHhhhhccCChhHHHHHHH
Q psy5931           3 IQFGKIARKHHLTSVCLDSLFRLYTI------PSVP----IVD-------CFEK-IRQQVKCYLQMAALDGKNQLQEGLE   64 (173)
Q Consensus         3 ~~fa~iARkh~l~~vc~~~L~ki~~l------p~i~----v~d-------aF~K-lrEq~kc~l~~~~~~~~~el~~gL~   64 (173)
                      +.-|..+...|=.+.+...+.+--.+      +.+.    +.+       -++. +...+.+++..      +++.++++
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~------g~~~~Al~   88 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIAC------GRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHT------TCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCchHHHH
Confidence            45567788888888888888874333      1111    111       1111 22234555553      45777777


Q ss_pred             HhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy5931          65 VIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAA  106 (173)
Q Consensus        65 vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~A  106 (173)
                      ..+..--   -.+.....++..|..+.++|+.++|.+.|..+
T Consensus        89 ~~~~al~---~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          89 ELEALTF---EHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHH---HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            7766544   35667899999999999999999999999998