Psyllid ID: psy5940

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
MTVMDNEEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWTGKKGKRLRSKLEAVKQKVR
ccccccccccccEEEEccccEEEEEcccccEEEEEccccccccccccccccccEEccccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEEEEEEEcccccccccEEEEccccccEEEEEccccEEEEEcccccccccccccccccccEEEEcccccccccEEEEEcccccEEEEEcccEEEEEcccccccccccccccccEEcccEEEEEEEccccccEEEEEccccEEEEEEcccEEEEEccccccccccccccccccccccc
ccHHHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEEEcHHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccEHHHHHccccEEEEEEEcccEEEEEEccEEEEEcccccccccccccccccccccccccccHHHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccc
mtvmdneemrpidhlirdrkidvssnqfNEVYIWGtnanynlgtgsqqtrdvPELLDSLKRASIKQVCMdkfhsvfvsddgrvwscghgqggrlglgsessvvspkklnfekdkdKLGVAMASISQDHSVFLMLSGSVFvcglnsfhqlglspppshivsptpiprsslkssqpligvccgrfhsvvyssrevytfgihagqlghspvtvssasviepkvqatiiredlpgfifesnrgtkhsftaetslgpefgggwtgkkgkRLRSKLEAVKQKVR
mtvmdneemrpidhlirdrkidvssNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHgqggrlglgsessvvspKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFtaetslgpefgggwtgkkgkrlrskleavkqkvr
MTVMDNEEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWscghgqggrlglgsessvvsPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWTGKKGKRLRSKLEAVKQKVR
*************HLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGS****DVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRL**********************LGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGL**********************PLIGVCCGRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFES******************************************
MTVMD**EMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIE*KVQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWTG******************
********MRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGW********************
MTVMDNEEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWTGK*****************
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MTVMDNEEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWTGKKGKRLRSKLEAVKQKVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query278 2.2.26 [Sep-21-2011]
Q9P2D0 1353 Inhibitor of Bruton tyros yes N/A 0.719 0.147 0.423 4e-39
Q6NRS1 1339 Inhibitor of Bruton tyros N/A N/A 0.723 0.150 0.401 6e-39
Q6ZPR6 1352 Inhibitor of Bruton tyros yes N/A 0.723 0.148 0.435 2e-34
Q69ZR2 2618 E3 ubiquitin-protein liga no N/A 0.208 0.022 0.793 3e-21
Q9ULT8 2610 E3 ubiquitin-protein liga no N/A 0.208 0.022 0.793 3e-21
Q5GLZ8 1057 Probable E3 ubiquitin-pro no N/A 0.805 0.211 0.313 5e-16
Q5PQN1 1057 Probable E3 ubiquitin-pro no N/A 0.665 0.175 0.331 2e-15
Q6PAV2 1057 Probable E3 ubiquitin-pro no N/A 0.665 0.175 0.326 4e-15
O74881 1347 BTB/POZ domain-containing yes N/A 0.615 0.126 0.329 7e-14
Q15034 1050 Probable E3 ubiquitin-pro no N/A 0.589 0.156 0.313 2e-13
>sp|Q9P2D0|IBTK_HUMAN Inhibitor of Bruton tyrosine kinase OS=Homo sapiens GN=IBTK PE=1 SV=3 Back     alignment and function desciption
 Score =  161 bits (408), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 124/208 (59%), Gaps = 8/208 (3%)

Query: 1   MTVMDNEEMRPIDHLIRDRKIDV--SSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDS 58
           + + D E +  +D +++DR   V   +    +VY WG N N+ LG GSQ ++  PEL+D 
Sbjct: 112 LYIQDKEGLSALDLVMKDRPTHVVFKNTDPTDVYTWGDNTNFTLGHGSQNSKHHPELVDL 171

Query: 59  LKRASI--KQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDK 116
             R+ I  KQV + KFHSVF+S  G+V++CGHG GGRLG G E + + P+ +      + 
Sbjct: 172 FSRSGIYIKQVVLCKFHSVFLSQKGQVYTCGHGPGGRLGHGDEQTCLVPRLVEGLNGHNC 231

Query: 117 LGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLI 176
             VA A   +DH+V L   G V+  GLN FHQLG+ PPPS    P  I    LK  + +I
Sbjct: 232 SQVAAA---KDHTVVLTEDGCVYTFGLNIFHQLGIIPPPSSCNVPRQIQAKYLK-GRTII 287

Query: 177 GVCCGRFHSVVYSSREVYTFGIHAGQLG 204
           GV  GRFH+V+++   VYT G++ GQLG
Sbjct: 288 GVAAGRFHTVLWTREAVYTMGLNGGQLG 315
Acts as an inhibitor of BTK tyrosine kinase activity, thereby playing a role in B-cell development. Down-regulates BTK kinase activity, leading to interference with BTK-mediated calcium mobilization and NF-kappa-B-driven transcription.
Homo sapiens (taxid: 9606)
>sp|Q6NRS1|IBTK_XENLA Inhibitor of Bruton tyrosine kinase OS=Xenopus laevis GN=ibtk PE=2 SV=1 Back     alignment and function description
>sp|Q6ZPR6|IBTK_MOUSE Inhibitor of Bruton tyrosine kinase OS=Mus musculus GN=Ibtk PE=1 SV=3 Back     alignment and function description
>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1 SV=2 Back     alignment and function description
>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=3 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|O74881|BTB1_SCHPO BTB/POZ domain-containing protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=btb1 PE=1 SV=1 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query278
390344159 1476 PREDICTED: inhibitor of Bruton tyrosine 0.701 0.132 0.447 1e-41
321465348 1276 hypothetical protein DAPPUDRAFT_322454 [ 0.712 0.155 0.439 2e-40
149638924 1300 PREDICTED: inhibitor of Bruton tyrosine 0.809 0.173 0.390 4e-40
118088785 1357 PREDICTED: inhibitor of Bruton tyrosine 0.723 0.148 0.421 4e-40
326916276 1361 PREDICTED: inhibitor of Bruton tyrosine 0.723 0.147 0.416 7e-40
47216007 1290 unnamed protein product [Tetraodon nigro 0.723 0.155 0.421 2e-39
224048498 1355 PREDICTED: inhibitor of Bruton tyrosine 0.723 0.148 0.430 2e-39
427782995 1182 Hypothetical protein [Rhipicephalus pulc 0.715 0.168 0.468 4e-39
395534526 1290 PREDICTED: inhibitor of Bruton tyrosine 0.723 0.155 0.421 4e-39
410904961 1328 PREDICTED: inhibitor of Bruton tyrosine 0.723 0.151 0.416 4e-39
>gi|390344159|ref|XP_003726055.1| PREDICTED: inhibitor of Bruton tyrosine kinase-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/208 (44%), Positives = 137/208 (65%), Gaps = 13/208 (6%)

Query: 5   DNEEMRPIDHLIRDRKIDVSSNQFN--EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRA 62
           D +E+ P++ L++D+   V+ +  +  + Y WGTN+N+NLG G Q++RD PEL+DSL   
Sbjct: 118 DKDELTPMELLMKDKPAYVTFDPVDPTQAYSWGTNSNFNLGHGRQRSRDQPELVDSLAAG 177

Query: 63  --SIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGV- 119
             SIKQV M KFH++F++  GRV +CGHGQGGRLGLG E++ + P+ L        LG  
Sbjct: 178 NHSIKQVVMCKFHTLFLTHQGRVLACGHGQGGRLGLGDETTCLRPQLLK------SLGAR 231

Query: 120 -AMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGV 178
             M + ++DHSVFLM SG+V  CG N++ QLG S      + P  +   +LK+ + + G+
Sbjct: 232 CKMMAGARDHSVFLMDSGNVMSCGENAYLQLGHSTIGQKCLLPKTLASKTLKNKE-IRGI 290

Query: 179 CCGRFHSVVYSSREVYTFGIHAGQLGHS 206
             GRFH+VVY+   V+T G++AGQLGH+
Sbjct: 291 AAGRFHTVVYTREAVFTLGLNAGQLGHN 318

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota
>gi|321465348|gb|EFX76350.1| hypothetical protein DAPPUDRAFT_322454 [Daphnia pulex] Back     alignment and taxonomy information
>gi|149638924|ref|XP_001512685.1| PREDICTED: inhibitor of Bruton tyrosine kinase [Ornithorhynchus anatinus] Back     alignment and taxonomy information
>gi|118088785|ref|XP_419865.2| PREDICTED: inhibitor of Bruton tyrosine kinase [Gallus gallus] Back     alignment and taxonomy information
>gi|326916276|ref|XP_003204435.1| PREDICTED: inhibitor of Bruton tyrosine kinase-like [Meleagris gallopavo] Back     alignment and taxonomy information
>gi|47216007|emb|CAF96255.1| unnamed protein product [Tetraodon nigroviridis] Back     alignment and taxonomy information
>gi|224048498|ref|XP_002189253.1| PREDICTED: inhibitor of Bruton tyrosine kinase [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|427782995|gb|JAA56949.1| Hypothetical protein [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|395534526|ref|XP_003769292.1| PREDICTED: inhibitor of Bruton tyrosine kinase [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|410904961|ref|XP_003965960.1| PREDICTED: inhibitor of Bruton tyrosine kinase-like [Takifugu rubripes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query278
MGI|MGI:1918677 1352 Ibtk "inhibitor of Bruton agam 0.802 0.164 0.359 3.3e-30
UNIPROTKB|F1NXV1 1359 IBTK "Uncharacterized protein" 0.838 0.171 0.331 7e-30
UNIPROTKB|F1RQL8 1346 IBTK "Uncharacterized protein" 0.863 0.178 0.338 1.4e-29
UNIPROTKB|F1MMV0 1353 IBTK "Uncharacterized protein" 0.802 0.164 0.346 2.9e-29
UNIPROTKB|E9PDR5 1152 IBTK "Inhibitor of Bruton tyro 0.712 0.171 0.373 3.7e-29
UNIPROTKB|E7EPI0 1338 IBTK "Inhibitor of Bruton tyro 0.712 0.147 0.373 5.9e-29
UNIPROTKB|Q9P2D0 1353 IBTK "Inhibitor of Bruton tyro 0.712 0.146 0.373 6.1e-29
RGD|1311697 1352 Ibtk "inhibitor of Bruton agam 0.712 0.146 0.344 4e-25
UNIPROTKB|G3V4V5926 HECTD1 "E3 ubiquitin-protein l 0.208 0.062 0.793 5.3e-20
UNIPROTKB|H0YJP0 1465 HECTD1 "E3 ubiquitin-protein l 0.208 0.039 0.793 1e-19
MGI|MGI:1918677 Ibtk "inhibitor of Bruton agammaglobulinemia tyrosine kinase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 347 (127.2 bits), Expect = 3.3e-30, P = 3.3e-30
 Identities = 83/231 (35%), Positives = 118/231 (51%)

Query:     3 VMDNEEMRPIDHLIRDRKIDV--SSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLK 60
             + D E + P+D L++DR   V        EVY WG N N+ LG GSQ ++  PELLD   
Sbjct:   114 MQDKEGLSPLDLLMKDRPTHVVFKDTDPTEVYTWGDNTNFTLGHGSQNSKHHPELLDLFS 173

Query:    61 RASI--KQVCMDKFHSVFVSDDGRVWXXXXXXXXXXXXXXXXXXXXPKKLNFEKDKDKLG 118
             R+ +  KQV + KFHSVF+S  G+V+                    P+ +      +   
Sbjct:   174 RSGVYVKQVVLCKFHSVFLSQKGQVYTCGHGRGGRLGHGDEQTCLVPRLVEGLSGHNCSQ 233

Query:   119 VAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGV 178
             VA A   +DH+V L   G V+  GLN FHQLG+ PPP+    P  I    LK  + +IGV
Sbjct:   234 VAAA---KDHTVVLTDDGCVYTFGLNMFHQLGIIPPPASCNVPRQIQAKYLKG-RTIIGV 289

Query:   179 CCGRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDL 229
               GRFH+V+++   VYT G++ GQLGH         V  P+  + +  +D+
Sbjct:   290 AAGRFHTVLWTREAVYTLGLNGGQLGHLLDPNGEKCVTTPRQVSALHHKDI 340
GO:0001933 "negative regulation of protein phosphorylation" evidence=ISO
GO:0005737 "cytoplasm" evidence=ISO
GO:0016020 "membrane" evidence=IEA
GO:0019901 "protein kinase binding" evidence=ISO
GO:0030292 "protein tyrosine kinase inhibitor activity" evidence=ISO
GO:0051209 "release of sequestered calcium ion into cytosol" evidence=ISO
GO:0061099 "negative regulation of protein tyrosine kinase activity" evidence=ISO
UNIPROTKB|F1NXV1 IBTK "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RQL8 IBTK "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMV0 IBTK "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E9PDR5 IBTK "Inhibitor of Bruton tyrosine kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7EPI0 IBTK "Inhibitor of Bruton tyrosine kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P2D0 IBTK "Inhibitor of Bruton tyrosine kinase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1311697 Ibtk "inhibitor of Bruton agammaglobulinemia tyrosine kinase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V4V5 HECTD1 "E3 ubiquitin-protein ligase HECTD1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0YJP0 HECTD1 "E3 ubiquitin-protein ligase HECTD1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query278
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-12
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-10
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-10
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-07
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 8e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-04
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score = 64.9 bits (158), Expect = 6e-12
 Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 15/199 (7%)

Query: 30  EVYIWGTNANYNLGTGSQQTRD------VPELLDSLKRASIKQVCMDKFHSVFVSDDGRV 83
            VY WGT     LG GS +          P  +      +I Q+     H + ++++G+V
Sbjct: 196 RVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKK---AIVQLAAGADHLIALTNEGKV 252

Query: 84  WSCGHGQGGRLGLGSESSVVSPKKLN-FEKDKDKLGVAMASISQDHSVFLMLSGSVFVCG 142
           +  G  Q G+LG  +   +     +      ++   VA      DHS+ L   G ++  G
Sbjct: 253 YGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGK---DHSLALDEDGEIYAWG 309

Query: 143 LNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFG-IHA 200
           +N F QLG           T      L S   +  +  G  HS++      +Y FG    
Sbjct: 310 VNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDR 369

Query: 201 GQLGHSPVTVSSASVIEPK 219
           GQLG         S     
Sbjct: 370 GQLGIQEEITIDVSTPTKL 388

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 278
KOG1427|consensus 443 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427|consensus 443 100.0
KOG0783|consensus 1267 100.0
KOG0783|consensus 1267 99.91
KOG1428|consensus 3738 99.88
KOG1428|consensus 3738 99.77
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.36
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.33
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.19
KOG0941|consensus 850 99.18
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.17
KOG0941|consensus 850 98.87
KOG0315|consensus311 91.63
KOG3669|consensus 705 89.17
KOG3669|consensus 705 88.6
KOG0291|consensus 893 87.48
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 85.13
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 81.84
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 80.02
>KOG1427|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.5e-40  Score=274.87  Aligned_cols=244  Identities=24%  Similarity=0.377  Sum_probs=206.1

Q ss_pred             CCCCcceeec--cCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCCEE
Q psy5940           7 EEMRPIDHLI--RDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVW   84 (278)
Q Consensus         7 ~~~~~~~v~~--~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~   84 (278)
                      -+..+.-|+.  ...|+ |+++-+|++|.||.|..||||+++.+.+..|+.|+.++..+|++.+||++|+++||++|+||
T Consensus        54 ~gv~iR~VasG~~aaH~-vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~  132 (443)
T KOG1427|consen   54 VGVNIRFVASGCAAAHC-VLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVL  132 (443)
T ss_pred             ccceEEEEecccchhhE-EEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEE
Confidence            3444555553  34555 88899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCcCCCCCCCce-eccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCC------
Q psy5940          85 SCGHGQGGRLGLGSESSV-VSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSH------  157 (278)
Q Consensus        85 ~~G~n~~gqlg~~~~~~~-~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~------  157 (278)
                      ++|.|.+||||.+...+. ..|.++. ....+|..|+|   |..|++.|+..+.+.++|...|||||++.+.+.      
T Consensus       133 afGeNK~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~c---ga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~  208 (443)
T KOG1427|consen  133 AFGENKYGQLGLGNAKNEVESTPLPC-VVSDEVTNVAC---GADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSS  208 (443)
T ss_pred             EecccccccccccccccccccCCCcc-ccCccceeecc---ccceEEEeecccceeecCCccccccccCcchhhcccccc
Confidence            999999999999876543 3333332 33568999999   999999999999999999999999999875432      


Q ss_pred             -----CCCCeeeccCCCCCCCCeEEEEccCCeEEEEECC-cEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCCCC
Q psy5940         158 -----IVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIREDLP  230 (278)
Q Consensus       158 -----~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~~-~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~  230 (278)
                           ...|++-....+.+.+ |++++||.+|+++++++ +||+||.. ||+||+..    ..++..|++|+.|......
T Consensus       209 ~~~~~e~~pr~~~i~~~dgvq-iv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaE----qKDEmvpRlik~Fd~~~rg  283 (443)
T KOG1427|consen  209 VRLAYEAQPRPKAIASLDGVQ-IVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAE----QKDEMVPRLIKVFDRNNRG  283 (443)
T ss_pred             ceeeeecCCCcccccccccee-eEEEeccCcceeeecCCccEEEecccccccccccc----chhhHHHHHHHHhcCCCCC
Confidence                 3445555555778888 99999999999999976 99999998 89999999    8999999999988765554


Q ss_pred             cceEEEeccCceEEEEecCCcCeEeecCCCCcc
Q psy5940         231 GFIFESNRGTKHSFTAETSLGPEFGGGWTGKKG  263 (278)
Q Consensus       231 ~~i~~i~~G~~hs~~~lt~~g~v~~wG~ng~~~  263 (278)
                        --.+.||+..++ +...-|.+|.||.+-+.|
T Consensus       284 --~~~~~~g~t~Sl-~v~e~G~Lf~~g~~k~~g  313 (443)
T KOG1427|consen  284 --PPNAILGYTGSL-NVAEGGQLFMWGKIKNNG  313 (443)
T ss_pred             --Ccceeeecccce-eecccceeEEeeccccCc
Confidence              346778888888 788899999999876655

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>KOG0315|consensus Back     alignment and domain information
>KOG3669|consensus Back     alignment and domain information
>KOG3669|consensus Back     alignment and domain information
>KOG0291|consensus Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query278
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 5e-07
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 5e-07
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 6e-07
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 9e-07
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 6e-05
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure 
Iteration: 1

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 20/233 (8%)
Query: 30  EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWXXXXX 89
           EVY WG      LG G+      P  + +L    IKQ+     H + V+ +G V      
Sbjct: 77  EVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRN 136
Query: 90  XXXXXXXXXXXXXXXPKKLN-FEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQ 148
                          P+K+  FE  +    + M +   +H+  +   G ++  G   +  
Sbjct: 137 QNGQLGLGDTEDSLVPQKIQAFEGIR----IKMVAAGAEHTAAVTEDGDLYGWGWGRYGN 192
Query: 149 LGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSV-VYSSREVYTFGIHA-GQLGHS 206
           LGL      +V      R +    + +  V CG  H++ V  S  +YT+G    GQLGH 
Sbjct: 193 LGLGDRTDRLVP----ERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG 248
Query: 207 PVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWT 259
            +      +I  K++A         FI + + G +H+  A TS G  +G GW 
Sbjct: 249 DL---EDHLIPHKLEALS-----NSFISQISGGWRHTM-ALTSDGKLYGWGWN 292
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query278
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 5e-36
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-34
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-30
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-24
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-35
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-34
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-33
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-33
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-28
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-23
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-04
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-30
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-29
3of7_A473 Regulator of chromosome condensation; beta-propell 8e-27
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-24
3of7_A 473 Regulator of chromosome condensation; beta-propell 5e-19
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-11
3of7_A473 Regulator of chromosome condensation; beta-propell 6e-11
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 4e-30
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-28
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-25
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-20
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-14
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 6e-05
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-29
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-27
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-25
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 6e-25
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-24
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 1e-19
3mvd_K423 Regulator of chromosome condensation; protein-DNA 9e-14
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-05
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-15
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-13
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-04
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  131 bits (332), Expect = 5e-36
 Identities = 53/192 (27%), Positives = 80/192 (41%), Gaps = 14/192 (7%)

Query: 30  EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHG 89
            +Y WG N    LG        VP   ++L      Q+   +     V+ DG++++ G+G
Sbjct: 21  TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 80

Query: 90  QGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQL 149
            GGRLG+G   SV +P  L   +      VA+ S    H + L   G V+  G     +L
Sbjct: 81  AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKL 139

Query: 150 GLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHS-VVYSSREVYTFGI-HAGQLGH-- 205
           G          P  I   SL     ++ V  G  HS  V ++ ++YT+G    G+LGH  
Sbjct: 140 GHGNRSPC-DRPRVI--ESL-RGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSD 195

Query: 206 -----SPVTVSS 212
                 P  V +
Sbjct: 196 SEDQLKPKLVEA 207
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query278
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3of7_A 473 Regulator of chromosome condensation; beta-propell 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.58
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.11
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 81.37
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 80.33
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=1.3e-51  Score=374.85  Aligned_cols=255  Identities=22%  Similarity=0.328  Sum_probs=227.2

Q ss_pred             cCCCCCCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCCE
Q psy5940           4 MDNEEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRV   83 (278)
Q Consensus         4 ~~~~~~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v   83 (278)
                      ..+++..+++|+|+..|+ ++|+++|+||+||.|.+||||.++......|.+++.+.+.+|++|+||.+|+++|+++|+|
T Consensus       116 ~~l~~~~i~~ia~G~~h~-~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v  194 (406)
T 4d9s_A          116 KALHGIRIKQIACGDSHC-LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL  194 (406)
T ss_dssp             GGGTTCCEEEEEECSSEE-EEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCE
T ss_pred             cccCCCCEEEEEEChhhe-EEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCE
Confidence            345677899999999998 7889999999999999999999999888999999999888999999999999999999999


Q ss_pred             EEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCee
Q psy5940          84 WSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTP  163 (278)
Q Consensus        84 ~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~  163 (278)
                      |+||.|.+||||.++......|.++..+...+|++|+|   |.+|+++|+++|+||+||.|.+||||.+.. .....|++
T Consensus       195 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~---G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~-~~~~~p~~  270 (406)
T 4d9s_A          195 YGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC---GWRHTISVSYSGALYTYGWSKYGQLGHGDL-EDHLIPHK  270 (406)
T ss_dssp             EEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE---CSSEEEEEETTCCEEEEECCTTSTTCSSSC-CCEEEEEE
T ss_pred             EEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE---CCCcEEEEcCCCCEEEeeCCCCCCCCCCCC-cCccccEE
Confidence            99999999999999998888999999888889999999   999999999999999999999999999865 45567887


Q ss_pred             eccCCCCCCCCeEEEEccCCeEEEEECC-cEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCCCCcceEEEeccCc
Q psy5940         164 IPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTK  241 (278)
Q Consensus       164 i~~~~~~~~~~i~~i~~g~~~~~~l~~~-~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~~  241 (278)
                      +..  +.+.. |++|+||.+|+++|+++ +||+||.| +||||.+.    ......|.++..+....    |++|+||..
T Consensus       271 v~~--~~~~~-v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~----~~~~~~p~~v~~~~~~~----v~~va~G~~  339 (406)
T 4d9s_A          271 LEA--LSNSF-ISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN----NLDQCSPVQVRFPDDQK----VVQVSCGWR  339 (406)
T ss_dssp             CGG--GTTSC-EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS----SSCEEEEEEECCGGGCC----EEEEEECSS
T ss_pred             ecc--cCCCC-EEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC----CCCCccCEEEeccCCCc----EEEEEeCCC
Confidence            774  55566 99999999999999975 99999999 59999998    66778899987665543    999999999


Q ss_pred             eEEEEecCCcCeEeecCCCCccCCccchhhhhcc
Q psy5940         242 HSFTAETSLGPEFGGGWTGKKGKRLRSKLEAVKQ  275 (278)
Q Consensus       242 hs~~~lt~~g~v~~wG~ng~~~~~~~~~~~~~~~  275 (278)
                      |++ +|+++|+||+||+|..+++|++.......|
T Consensus       340 hs~-alt~~G~v~~wG~n~~GqLG~g~~~~~~~P  372 (406)
T 4d9s_A          340 HTL-AVTERNNVFAWGRGTNGQLGIGESVDRNFP  372 (406)
T ss_dssp             EEE-EEETTSCEEEEECCTTSTTCSSSCCCEEEE
T ss_pred             eEE-EEeCCCCEEEecCCCCCccCCCCCCCCcCC
Confidence            999 899999999999988777776655444443
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 278
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-14
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-11
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-11
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-10
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-10
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-07
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-04
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 0.003
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (168), Expect = 4e-14
 Identities = 30/134 (22%), Positives = 43/134 (32%), Gaps = 6/134 (4%)

Query: 73  HSVFVSDDGRVWSCGHGQGGRLGLGSESSVVS-PKKLNFEKDKDKLGVAMASISQDHSVF 131
           H    ++ G V + G G  G+LGLG        P  ++  +D     V  A     H+V 
Sbjct: 7   HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED-----VVQAEAGGMHTVC 61

Query: 132 LMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR 191
           L  SG V+  G N    LG                   K  Q   G       +      
Sbjct: 62  LSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVF 121

Query: 192 EVYTFGIHAGQLGH 205
              +F  + G +G 
Sbjct: 122 LWGSFRDNNGVIGL 135
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query278
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.96
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 90.75
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 90.02
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-42  Score=306.12  Aligned_cols=235  Identities=23%  Similarity=0.289  Sum_probs=173.5

Q ss_pred             EEecCCCcEEEEecCCCCcccCCCCC-CccCceeeccccCCCEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCc
Q psy5940          23 VSSNQFNEVYIWGTNANYNLGTGSQQ-TRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESS  101 (278)
Q Consensus        23 i~l~~~g~v~~wG~n~~gqlG~~~~~-~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~  101 (278)
                      .+++++|+||+||.|.+||||+++.. .+..|.+|+.+.  +|++|+||..|++||+++|+||+||.|.+||||.+....
T Consensus         9 ~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~   86 (401)
T d1a12a_           9 SHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVE   86 (401)
T ss_dssp             TCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS--CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCST
T ss_pred             EEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCC--CeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccc
Confidence            56799999999999999999999665 478888887654  799999999999999999999999999999999876544


Q ss_pred             eeccEEeecCC-----------------------------------------------------CCCEEEEEEccCCCcE
Q psy5940         102 VVSPKKLNFEK-----------------------------------------------------DKDKLGVAMASISQDH  128 (278)
Q Consensus       102 ~~~p~~i~~~~-----------------------------------------------------~~~i~~i~~~~~g~~~  128 (278)
                      ...|.+.....                                                     ..+|++|+|   |..|
T Consensus        87 ~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~---g~~~  163 (401)
T d1a12a_          87 GSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS---GNDH  163 (401)
T ss_dssp             TGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE---CSSE
T ss_pred             cccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEe---cccc
Confidence            33222222111                                                     234555555   6666


Q ss_pred             EEEEEcCCcEEEEeCCCccccCCCCCC-----------------------------------------------------
Q psy5940         129 SVFLMLSGSVFVCGLNSFHQLGLSPPP-----------------------------------------------------  155 (278)
Q Consensus       129 ~~~lt~~G~v~~~G~n~~gqlg~~~~~-----------------------------------------------------  155 (278)
                      +++++++|++|+||.|.++|||.....                                                     
T Consensus       164 ~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~  243 (401)
T d1a12a_         164 LVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYG  243 (401)
T ss_dssp             EEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEE
T ss_pred             eeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEee
Confidence            666666666677777777777643210                                                     


Q ss_pred             --------------CCCCCCeeeccCCCCCCCCeEEEEccCCeEEEEECC-cEEEeeCC-CcccCCCCCCCCCCceeece
Q psy5940         156 --------------SHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGIH-AGQLGHSPVTVSSASVIEPK  219 (278)
Q Consensus       156 --------------~~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~~-~vy~wG~n-~gqlG~~~~~~~~~~~~~P~  219 (278)
                                    .....+..+......... ++.+++|..|+++++++ +||+||.| +||||.+.   .......|+
T Consensus       244 ~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~-~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~---~~~~~~~P~  319 (401)
T d1a12a_         244 FGLSNYHQLGTPGTESCFIPQNLTSFKNSTKS-WVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE---GAEEKSIPT  319 (401)
T ss_dssp             EECCTTSTTSCSSCSCEEEEEECGGGCCTTCC-EEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCT---TCCCEEEEE
T ss_pred             ecccceecccccccccceecccccccccccee-EEEEeeeccceeeeccCCCEEEecccccCccCCCc---ccccccCCE
Confidence                          001112222222222334 99999999999999975 99999999 59999987   345567788


Q ss_pred             EeeecccCCCCcceEEEeccCceEEEEecCCcCeEeecCCCCccCCccchhhhh
Q psy5940         220 VQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWTGKKGKRLRSKLEAV  273 (278)
Q Consensus       220 ~i~~~~~~~~~~~i~~i~~G~~hs~~~lt~~g~v~~wG~ng~~~~~~~~~~~~~  273 (278)
                      .+..+..      |++|+||.+|++ +++++|+||+||+|..+++|.+......
T Consensus       320 ~i~~~~~------i~~Is~G~~hs~-alt~dG~v~~WG~n~~GQLG~G~~~~~~  366 (401)
T d1a12a_         320 LISRLPA------VSSVACGASVGY-AVTKDGRVFAWGMGTNYQLGTGQDEDAW  366 (401)
T ss_dssp             ECCSSSS------EEEEEECSSEEE-EEETTSCEEEEECCTTSTTCSSSCSCEE
T ss_pred             EcCCCCC------eEEEEeeCCEEE-EEeCCCeEEEEecCCCCCCCCCCCCCEe
Confidence            8865432      999999999999 8999999999999988777776544333
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure