Psyllid ID: psy5955

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLKWIEGPLSFYK
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEccccccccccccccHHHHHHcccEEEEEcccccccEEEEEccccccccccccccEEEEEEcccccccEEEEEccccccccccccEEEEEEEEEccccHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEcccccccccccHHHHHHHHcccEEEEEEcccEEEEEEEEcccccccccccccEEEEEEEEccccccEEEEEcccccccccccccEEEEEEHHHHHHHcccccHHHHcccccHHcc
Coil and Loop (DISEMBL)
mdcvkqepgglgarcvfitdakqppfspssptyaplLAKDLLYNVYragtwgsmrhilldttpdnatLQVEHAYINALtrgdlaslkwiegplsfyNITSVILLLQIEHAYINALtrgdlaslkwiegplsfyk
Flexible Loop (DISEMBL)
mdcvkqepgglGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRgdlaslkwiegplsfyk
Low Complexity Region (SEG)
MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLKWIEGPLSFYK
Disordered region (IsUnstruct)
**********LGARCVFITD***********TYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLKWIEGPLS***
Disordered Region (DISOPRED)
MDCVKQEPGGLGARCVFITDA**************LLAKDLLYNVYRAGTWGSMRHILLDT******LQVEHAYINALTRGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLKWIEGPL****
Disordered Region (DISEMBL)
********GGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLKWIEGPLSFYK
Disordered Region (DISPRO)
MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLKWIEGPLSFYK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLKWIEGPLSFYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
P19096	2504	Fatty acid synthase OS=Mu	yes	N/A	0.731	0.039	0.394	1e-18
P12785	2505	Fatty acid synthase OS=Ra	yes	N/A	0.679	0.036	0.402	2e-17
Q71SP7	2513	Fatty acid synthase OS=Bo	yes	N/A	0.731	0.038	0.394	2e-16
P12276	2512	Fatty acid synthase OS=Ga	yes	N/A	0.820	0.043	0.386	2e-15
P49327	2511	Fatty acid synthase OS=Ho	yes	N/A	0.649	0.034	0.387	9e-15

>sp|P19096|FAS_MOUSE Fatty acid synthase OS=Mus musculus GN=Fasn PE=1 SV=2

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 6/104 (5%)

Query: 1    MDCVKQEPGGLGARCVFITD----AKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
            ++C+++EPGG   RC+ +++    +  P   P SP    +L  DL+ NVYR G WG+ RH
Sbjct: 1450 VNCLRKEPGGHRIRCILLSNLSNTSHAPKLDPGSPELQQVLKHDLVMNVYRDGAWGAFRH 1509

Query: 57   ILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITS 100
              L+   D    Q  HA++N LTRGDLAS++W+  PL     +S
Sbjct: 1510 FQLEQ--DKPKEQTAHAFVNVLTRGDLASIRWVSSPLKHTQPSS 1551

Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 4

>sp|P12785|FAS_RAT Fatty acid synthase OS=Rattus norvegicus GN=Fasn PE=1 SV=3

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 6/97 (6%)

Query: 1    MDCVKQEPGGLGARCVFITD----AKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
            ++C+++EPGG   RC+ +++    +  P   P S     +L  DL+ NVYR G WG+ RH
Sbjct: 1450 VNCLRKEPGGHRIRCILLSNLSSTSHVPKLDPGSSELQKVLESDLVMNVYRDGAWGAFRH 1509

Query: 57   ILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPL 93
              L+   D    Q  HA++N LTRGDLAS++W+  PL
Sbjct: 1510 FQLEQ--DKPEEQTAHAFVNVLTRGDLASIRWVSSPL 1544

Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 4

>sp|Q71SP7|FAS_BOVIN Fatty acid synthase OS=Bos taurus GN=FASN PE=2 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 1    MDCVKQEPGGLGARCVFITDAKQ----PPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
            ++C+++EP G   RCV +++       P   P S     +L  DL+ NVYR G WG+ RH
Sbjct: 1459 VNCLRKEPDGHRIRCVLVSNLNSTSPIPETDPKSLELQKVLQSDLVMNVYRDGAWGAFRH 1518

Query: 57   ILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITS 100
              L+   D    Q EHA+IN LTRGDL+S++W+  PL     T+
Sbjct: 1519 FPLEQ--DKPEEQTEHAFINVLTRGDLSSIRWVCSPLRHSQPTA 1560

Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 4

>sp|P12276|FAS_CHICK Fatty acid synthase OS=Gallus gallus GN=FASN PE=1 SV=5

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 69/119 (57%), Gaps = 9/119 (7%)

Query: 1    MDCVKQEPGGLGARCVFITD----AKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
            ++C++ E  G   RCVF+++    +  P  S SS     ++ +DL+ NVYR G WGS RH
Sbjct: 1461 VNCLRLEAEGHRIRCVFVSNLSPSSTVPATSLSSLEMQKIIERDLVMNVYRDGKWGSFRH 1520

Query: 57   I-LLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITS-VILLLQIEHAYIN 113
            + L    P   T   E AY+N LTRGDL+SL+WI  PL  +  T+  + L ++ +A +N
Sbjct: 1521 LPLQQAQPQELT---ECAYVNVLTRGDLSSLRWIVSPLRHFQTTNPNVQLCKVYYASLN 1576

Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 4

>sp|P49327|FAS_HUMAN Fatty acid synthase OS=Homo sapiens GN=FASN PE=1 SV=3

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 6/93 (6%)

Query: 1    MDCVKQEPGGLGARCVFITD----AKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
            ++C+++EPGG   RCV +++    +  P   P S     +L  DL+ NVYR G WG+ RH
Sbjct: 1457 VNCLRREPGGNRLRCVLLSNLSSTSHVPEVDPGSAELQKVLQGDLVMNVYRDGAWGAFRH 1516

Query: 57   ILLDTTPDNATLQVEHAYINALTRGDLASLKWI 89
             LL+   D       HA+++ LTRGDL+S++W+
Sbjct: 1517 FLLEE--DKPEEPTAHAFVSTLTRGDLSSIRWV 1547

Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities and an acyl carrier protein.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
328705166	2395	PREDICTED: fatty acid synthase-like isof	0.716	0.040	0.628	5e-28
328705164	2389	PREDICTED: fatty acid synthase-like isof	0.716	0.040	0.628	5e-28
189233593	3189	PREDICTED: similar to fatty acid synthas	0.708	0.029	0.597	3e-27
270014917	2383	hypothetical protein TcasGA2_TC011522 [T	0.701	0.039	0.604	3e-27
328705168	2113	PREDICTED: fatty acid synthase-like [Acy	0.716	0.045	0.597	8e-26
345479260	2408	PREDICTED: fatty acid synthase-like isof	0.723	0.040	0.556	7e-25
345479258	2398	PREDICTED: fatty acid synthase-like isof	0.723	0.040	0.556	7e-25
322799535	1336	hypothetical protein SINV_13320 [Solenop	0.716	0.071	0.541	6e-24
332018927	2381	Fatty acid synthase [Acromyrmex echinati	0.716	0.040	0.541	1e-23
383864155	2394	PREDICTED: fatty acid synthase-like [Meg	0.723	0.040	0.546	1e-23

>gi|328705166|ref|XP_001945190.2| PREDICTED: fatty acid synthase-like isoform 1 [Acyrthosiphon pisum]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 1    MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYR-AGTWGSMRHILL 59
            ++CVKQEPGG   R VFI D   P FS ++P YA  L KDLL NV +  G WGSMRH+ L
Sbjct: 1365 VNCVKQEPGGNSVRSVFIKDPAAPKFSLTAPLYAAQLKKDLLSNVLKPNGVWGSMRHLKL 1424

Query: 60   DTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFY 96
            +   D  +LQVEHAYINALTRGDL+SLKWIEGPL++Y
Sbjct: 1425 ENQQDKPSLQVEHAYINALTRGDLSSLKWIEGPLTYY 1461

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705164|ref|XP_003242717.1| PREDICTED: fatty acid synthase-like isoform 2 [Acyrthosiphon pisum]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 1    MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYR-AGTWGSMRHILL 59
            ++CVKQEPGG   R VFI D   P FS ++P YA  L KDLL NV +  G WGSMRH+ L
Sbjct: 1359 VNCVKQEPGGNSVRSVFIKDPAAPKFSLTAPLYAAQLKKDLLSNVLKPNGVWGSMRHLKL 1418

Query: 60   DTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFY 96
            +   D  +LQVEHAYINALTRGDL+SLKWIEGPL++Y
Sbjct: 1419 ENQQDKPSLQVEHAYINALTRGDLSSLKWIEGPLTYY 1455

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233593|ref|XP_970417.2| PREDICTED: similar to fatty acid synthase [Tribolium castaneum]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 2/97 (2%)

Query: 1    MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLD 60
            ++C+KQEPGG+G R VFI D   P FS S+  Y   L KDL++NV +   WGS RHILLD
Sbjct: 2161 VNCLKQEPGGVGIRAVFIQDTNAPKFSLSA--YEQQLKKDLVHNVLKKNVWGSFRHILLD 2218

Query: 61   TTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYN 97
               D   LQVEHAYIN LTRGDL+SL+WIEGPL++Y 
Sbjct: 2219 HDHDGGKLQVEHAYINTLTRGDLSSLRWIEGPLTYYK 2255

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014917|gb|EFA11365.1| hypothetical protein TcasGA2_TC011522 [Tribolium castaneum]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 70/96 (72%), Gaps = 2/96 (2%)

Query: 1    MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLD 60
            ++C+KQEPGG+G R VFI D   P FS S+  Y   L KDL++NV +   WGS RHILLD
Sbjct: 1355 VNCLKQEPGGVGIRAVFIQDTNAPKFSLSA--YEQQLKKDLVHNVLKKNVWGSFRHILLD 1412

Query: 61   TTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFY 96
               D   LQVEHAYIN LTRGDL+SL+WIEGPL++Y
Sbjct: 1413 HDHDGGKLQVEHAYINTLTRGDLSSLRWIEGPLTYY 1448

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705168|ref|XP_001945287.2| PREDICTED: fatty acid synthase-like [Acyrthosiphon pisum]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 68/97 (70%), Gaps = 1/97 (1%)

Query: 1    MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYR-AGTWGSMRHILL 59
            ++CVKQEPGG   R +FI D   P FS S+P Y   L KDLL NV +  G WGSMRH+ L
Sbjct: 1361 VNCVKQEPGGNSVRSIFIQDPAAPKFSLSAPLYTEQLKKDLLSNVLKPNGVWGSMRHLRL 1420

Query: 60   DTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFY 96
            +   +   L+VEHAYINALTRGDL+SL WIEGPLS Y
Sbjct: 1421 ENQQNKPLLEVEHAYINALTRGDLSSLNWIEGPLSHY 1457

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479260|ref|XP_001605059.2| PREDICTED: fatty acid synthase-like isoform 1 [Nasonia vitripennis]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 66/97 (68%)

Query: 1    MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLD 60
            M C++QE GG+  R VFI D   P FS +   YA  L K L+ NV + G WGS RH+ LD
Sbjct: 1372 MTCIRQEAGGMNVRYVFIQDKNAPKFSLTDKFYADQLDKQLMANVLKYGQWGSYRHLRLD 1431

Query: 61   TTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYN 97
               D ++L VEHAYINAL RGDL+SL+WIEGPLS+Y 
Sbjct: 1432 QQSDVSSLHVEHAYINALVRGDLSSLRWIEGPLSYYQ 1468

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479258|ref|XP_003423914.1| PREDICTED: fatty acid synthase-like isoform 2 [Nasonia vitripennis]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 66/97 (68%)

Query: 1    MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLD 60
            M C++QE GG+  R VFI D   P FS +   YA  L K L+ NV + G WGS RH+ LD
Sbjct: 1362 MTCIRQEAGGMNVRYVFIQDKNAPKFSLTDKFYADQLDKQLMANVLKYGQWGSYRHLRLD 1421

Query: 61   TTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYN 97
               D ++L VEHAYINAL RGDL+SL+WIEGPLS+Y 
Sbjct: 1422 QQSDVSSLHVEHAYINALVRGDLSSLRWIEGPLSYYQ 1458

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799535|gb|EFZ20843.1| hypothetical protein SINV_13320 [Solenopsis invicta]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 66/96 (68%)

Query: 1   MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLD 60
           M C+++E GG  AR VFI D   P F  SS  YA  + K L+ NV + G WGS RH+ LD
Sbjct: 314 MTCIRRETGGANARYVFIQDKDAPKFGLSSQFYAEQIDKGLMANVLKGGQWGSYRHLPLD 373

Query: 61  TTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFY 96
              + ++LQVEHAY+N L RGDL+SL+WIEGPLS+Y
Sbjct: 374 QQNNVSSLQVEHAYVNTLMRGDLSSLRWIEGPLSYY 409

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018927|gb|EGI59473.1| Fatty acid synthase [Acromyrmex echinatior]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 66/96 (68%)

Query: 1    MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLD 60
            M C+++E GG  AR VFI D   P F  S+  Y   L K L+ NV + G WGS RH+ LD
Sbjct: 1372 MTCIRREAGGANARYVFIQDKNAPKFDLSARFYMEQLDKGLMTNVLKGGQWGSYRHLPLD 1431

Query: 61   TTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFY 96
               + ++LQVEHAY+N LTRGDL+SL+WIEGPLS+Y
Sbjct: 1432 QQNNVSSLQVEHAYVNTLTRGDLSSLRWIEGPLSYY 1467

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864155|ref|XP_003707545.1| PREDICTED: fatty acid synthase-like [Megachile rotundata]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 67/97 (69%)

Query: 1    MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLD 60
            M+CV++E  G  AR VFI D   P FS +   YA  L+K L+ NV + G+WGS RH+ LD
Sbjct: 1362 MNCVRREEEGSHARYVFILDKNAPKFSLTDKFYAQQLSKQLMANVLKGGSWGSYRHLRLD 1421

Query: 61   TTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYN 97
               D ++LQVEHAYINAL RGDL+SL+WIE  LS+Y 
Sbjct: 1422 QQKDASSLQVEHAYINALARGDLSSLRWIESSLSYYQ 1458

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
FB|FBgn0027571	2544	CG3523 [Drosophila melanogaste	0.656	0.034	0.577	2.8e-20
FB|FBgn0042627	2409	v(2)k05816 "v(2)k05816" [Droso	0.686	0.038	0.510	2.2e-18
ZFIN|ZDB-GENE-030131-7802	2514	fasn "fatty acid synthase" [Da	0.828	0.044	0.406	3e-16
MGI|MGI:95485	2504	Fasn "fatty acid synthase" [Mu	0.679	0.036	0.412	6.3e-16
FB|FBgn0040001	2394	CG17374 [Drosophila melanogast	0.716	0.040	0.402	2e-15
RGD|620665	2505	Fasn "fatty acid synthase" [Ra	0.679	0.036	0.402	3.5e-15
UNIPROTKB|P12785	2505	Fasn "Fatty acid synthase" [Ra	0.679	0.036	0.402	3.5e-15
UNIPROTKB|E1BWG0	2446	FASN "Fatty acid synthase" [Ga	0.820	0.044	0.386	1.5e-14
UNIPROTKB|F1N8A8	2512	FASN "Fatty acid synthase" [Ga	0.820	0.043	0.386	1.5e-14
UNIPROTKB|E1BW07	2513	FASN "Fatty acid synthase" [Ga	0.820	0.043	0.386	1.5e-14

FB|FBgn0027571 CG3523 [Drosophila melanogaster (taxid:7227)]

 Score = 257 (95.5 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 52/90 (57%), Positives = 62/90 (68%)

Query:     1 MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLD 60
             M C+K E GG  AR VF+ DAK   FS +S  Y   L KDL+ NV + G WG+ RH+ L+
Sbjct:  1493 MTCIKNENGGKLARLVFVQDAKAEKFSLTSTLYRQQLEKDLISNVLKNGAWGTFRHLKLE 1552

Query:    61 TTPDNATLQVEHAYINALTRGDLASLKWIE 90
             T    ATLQVEHAY+NAL +GDLASLKWIE
Sbjct:  1553 T--QQATLQVEHAYVNALVKGDLASLKWIE 1580

GO:0004312 "fatty acid synthase activity" evidence=ISS

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0009058 "biosynthetic process" evidence=IEA

GO:0004314 "[acyl-carrier-protein

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004313 "[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0016296 "palmitoyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

FB|FBgn0042627 v(2)k05816 "v(2)k05816" [Drosophila melanogaster (taxid:7227)]

 Score = 239 (89.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 48/94 (51%), Positives = 61/94 (64%)

Query:     1 MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLD 60
             M+C+K+E GG   R   I D   P FS   P YA  LAKDL+ NVYR G+WGS RH+ ++
Sbjct:  1370 MNCLKREAGGHFLRLYLILDEGVPQFSLDDPFYAAQLAKDLVVNVYRNGSWGSYRHLKME 1429

Query:    61 TTPDNATLQVEHAYINALTRGDLASLKWIEGPLS 94
             + P    L VE AY+N L +GDL+SL+WIE P S
Sbjct:  1430 SRPP--MLPVEQAYVNTLVKGDLSSLRWIESPRS 1461

GO:0004313 "[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0009058 "biosynthetic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

ZFIN|ZDB-GENE-030131-7802 fasn "fatty acid synthase" [Danio rerio (taxid:7955)]

 Score = 219 (82.2 bits), Expect = 3.0e-16, P = 3.0e-16
 Identities = 48/118 (40%), Positives = 70/118 (59%)

Query:     1 MDCVKQEPGGLGARCVFITD----AKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
             ++C++QEPGG   RC F+++    A  P   P+      LL KDL+ NV+R G WG  RH
Sbjct:  1466 VNCLRQEPGGNRIRCTFVSNLSKGAAVPSLLPNEKVMKALLKKDLVMNVHRDGLWGVFRH 1525

Query:    57 ILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITSV-ILLLQIEHAYIN 113
              LL  T D +    E AY+N LTRGDL+SL+WI  PL  +  +S  + L ++ ++ +N
Sbjct:  1526 QLL--TQDLSEELTEQAYVNVLTRGDLSSLRWIASPLRHFVASSPNVQLCRVYYSSLN 1581

GO:0016297 "acyl-[acyl-carrier-protein

GO:0016740 "transferase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004312 "fatty acid synthase activity" evidence=IEA

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0008152 "metabolic process" evidence=IEA

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004313 "[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016296 "palmitoyl-[acyl-carrier-protein

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0004314 "[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0009058 "biosynthetic process" evidence=IEA

MGI|MGI:95485 Fasn "fatty acid synthase" [Mus musculus (taxid:10090)]

 Score = 216 (81.1 bits), Expect = 6.3e-16, P = 6.3e-16
 Identities = 40/97 (41%), Positives = 58/97 (59%)

Query:     1 MDCVKQEPGGLGARCVFITDAKQ----PPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
             ++C+++EPGG   RC+ +++       P   P SP    +L  DL+ NVYR G WG+ RH
Sbjct:  1450 VNCLRKEPGGHRIRCILLSNLSNTSHAPKLDPGSPELQQVLKHDLVMNVYRDGAWGAFRH 1509

Query:    57 ILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPL 93
               L+   D    Q  HA++N LTRGDLAS++W+  PL
Sbjct:  1510 FQLEQ--DKPKEQTAHAFVNVLTRGDLASIRWVSSPL 1544

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004312 "fatty acid synthase activity" evidence=IEA

GO:0004313 "[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0016296 "palmitoyl-[acyl-carrier-protein

GO:0016297 "acyl-[acyl-carrier-protein

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0019171 "3-hydroxyacyl-[acyl-carrier-protein

GO:0042587 "glycogen granule" evidence=IDA

GO:0047451 "3-hydroxyoctanoyl-[acyl-carrier-protein

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0071353 "cellular response to interleukin-4" evidence=IDA

FB|FBgn0040001 CG17374 [Drosophila melanogaster (taxid:7227)]

 Score = 211 (79.3 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 39/97 (40%), Positives = 60/97 (61%)

Query:     1 MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLD 60
             ++C+++EP G   RC FI D   P F  S P Y+   +  L +N+YR G+WGS RH+ L 
Sbjct:  1345 VNCLRKEPDGNLIRCFFIDDDSAPDFDLSHPFYSTQYSLGLAFNIYRNGSWGSYRHLQL- 1403

Query:    61 TTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYN 97
                D  + +++H Y N + RGDL+SL+W++GP +  N
Sbjct:  1404 LKNDQPSKRLDHIYGNVIQRGDLSSLQWLKGPFNSQN 1440

GO:0004312 "fatty acid synthase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0005835 "fatty acid synthase complex" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

RGD|620665 Fasn "fatty acid synthase" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:     1 MDCVKQEPGGLGARCVFITDAKQ----PPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
             ++C+++EPGG   RC+ +++       P   P S     +L  DL+ NVYR G WG+ RH
Sbjct:  1450 VNCLRKEPGGHRIRCILLSNLSSTSHVPKLDPGSSELQKVLESDLVMNVYRDGAWGAFRH 1509

Query:    57 ILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPL 93
               L+   D    Q  HA++N LTRGDLAS++W+  PL
Sbjct:  1510 FQLEQ--DKPEEQTAHAFVNVLTRGDLASIRWVSSPL 1544

GO:0004312 "fatty acid synthase activity" evidence=IMP;IDA

GO:0004313 "[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006084 "acetyl-CoA metabolic process" evidence=IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IMP

GO:0008144 "drug binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=TAS

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0016296 "palmitoyl-[acyl-carrier-protein

GO:0042470 "melanosome" evidence=IEA

GO:0042587 "glycogen granule" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0047451 "3-hydroxyoctanoyl-[acyl-carrier-protein

GO:0070402 "NADPH binding" evidence=IDA

GO:0071353 "cellular response to interleukin-4" evidence=ISO

UNIPROTKB|P12785 Fasn "Fatty acid synthase" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:     1 MDCVKQEPGGLGARCVFITDAKQ----PPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
             ++C+++EPGG   RC+ +++       P   P S     +L  DL+ NVYR G WG+ RH
Sbjct:  1450 VNCLRKEPGGHRIRCILLSNLSSTSHVPKLDPGSSELQKVLESDLVMNVYRDGAWGAFRH 1509

Query:    57 ILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPL 93
               L+   D    Q  HA++N LTRGDLAS++W+  PL
Sbjct:  1510 FQLEQ--DKPEEQTAHAFVNVLTRGDLASIRWVSSPL 1544

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|E1BWG0 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 46/119 (38%), Positives = 69/119 (57%)

Query:     1 MDCVKQEPGGLGARCVFITDAKQ----PPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
             ++C++ E  G   RCVF+++       P  S SS     ++ +DL+ NVYR G WGS RH
Sbjct:  1387 VNCLRLEAEGHRIRCVFVSNLSPSSTVPATSLSSLEMQKIIERDLVMNVYRDGKWGSFRH 1446

Query:    57 I-LLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITSV-ILLLQIEHAYIN 113
             + L    P   T   E+AY+N LTRGDL+SL+WI  PL  +  T+  + L ++ +A +N
Sbjct:  1447 LPLQQAQPQELT---EYAYVNVLTRGDLSSLRWIVSPLRHFQTTNPNVQLCKVYYASLN 1502

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004313 "[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0016296 "palmitoyl-[acyl-carrier-protein

UNIPROTKB|F1N8A8 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 46/119 (38%), Positives = 69/119 (57%)

Query:     1 MDCVKQEPGGLGARCVFITDAKQ----PPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
             ++C++ E  G   RCVF+++       P  S SS     ++ +DL+ NVYR G WGS RH
Sbjct:  1461 VNCLRLEAEGHRIRCVFVSNLSPSSTVPATSLSSLEMQKIIERDLVMNVYRDGKWGSFRH 1520

Query:    57 I-LLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITSV-ILLLQIEHAYIN 113
             + L    P   T   E+AY+N LTRGDL+SL+WI  PL  +  T+  + L ++ +A +N
Sbjct:  1521 LPLQQAQPQELT---EYAYVNVLTRGDLSSLRWIVSPLRHFQTTNPNVQLCKVYYASLN 1576

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004313 "[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0016296 "palmitoyl-[acyl-carrier-protein

UNIPROTKB|E1BW07 FASN "Fatty acid synthase" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 46/119 (38%), Positives = 69/119 (57%)

Query:     1 MDCVKQEPGGLGARCVFITDAKQ----PPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
             ++C++ E  G   RCVF+++       P  S SS     ++ +DL+ NVYR G WGS RH
Sbjct:  1461 VNCLRLEAEGHRIRCVFVSNLSPSSTVPATSLSSLEMQKIIERDLVMNVYRDGKWGSFRH 1520

Query:    57 I-LLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSFYNITSV-ILLLQIEHAYIN 113
             + L    P   T   E+AY+N LTRGDL+SL+WI  PL  +  T+  + L ++ +A +N
Sbjct:  1521 LPLQQAQPQELT---EYAYVNVLTRGDLSSLRWIVSPLRHFQTTNPNVQLCKVYYASLN 1576

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004313 "[acyl-carrier-protein

GO:0004314 "[acyl-carrier-protein

GO:0004315 "3-oxoacyl-[acyl-carrier-protein

GO:0004316 "3-oxoacyl-[acyl-carrier-protein

GO:0004317 "3-hydroxypalmitoyl-[acyl-carrier-protein

GO:0004319 "enoyl-[acyl-carrier-protein

GO:0004320 "oleoyl-[acyl-carrier-protein

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016295 "myristoyl-[acyl-carrier-protein

GO:0016296 "palmitoyl-[acyl-carrier-protein

GO:0005739 "mitochondrion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042587 "glycogen granule" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	134
cd08954	452	cd08954, KR_1_FAS_SDR_x, beta-ketoacyl reductase (	9e-05

>gnl|CDD|187657 cd08954, KR_1_FAS_SDR_x, beta-ketoacyl reductase (KR) domain of fatty acid synthase (FAS), subgroup 1, complex (x) SDRs

 Score = 40.5 bits (95), Expect = 9e-05
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 3   CVKQEPGGLGARCVFITDAK--QPPFSPSSPTYAPLLAK-DLLYNVYRAGTWGSMRHILL 59
             ++EP     RC+F+++    + P   +   Y   + K   + NVY++G+WG  RH+LL
Sbjct: 145 YFREEPQLKLIRCLFVSNLNSQKEPIIRNGKVYYERVKKNSNIKNVYKSGSWGDFRHLLL 204

Query: 60  DT 61
           D 
Sbjct: 205 DL 206

NADP-dependent KR domain of the multidomain type I FAS, a complex SDR family. This subfamily also includes proteins identified as polyketide synthase (PKS), a protein with related modular protein architecture and similar function. It includes the KR domains of mammalian and chicken FAS, and Dictyostelium discoideum putative polyketide synthases (PKSs). These KR domains contain two subdomains, each of which is related to SDR Rossmann fold domains. However, while the C-terminal subdomain has an active site similar to the other SDRs and a NADP-binding capability, the N-terminal SDR-like subdomain is truncated and lacks these functions, serving a supportive structural role. In some instances, such as porcine FAS, an enoyl reductase (a Rossman fold NAD-binding domain of the medium-chain dehydrogenase/reductase, MDR family) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consists of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthesis uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-ketoacyl reductase (KR), forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-enoyl reductase (ER); this KR and ER are members of the SDR family. This KR subfamily has an active site tetrad with a similar 3D orientation compared to archetypical SDRs, but the active site Lys and Asn residue positions are swapped. The characteristic NADP-binding is typical of the multidomain complex SDRs, with a GGXGXXG NADP binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 452

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
KOG1202|consensus	2376		100.0
KOG1202|consensus	2376		98.89

>KOG1202|consensus

Probab=100.00  E-value=2.8e-41  Score=314.05  Aligned_cols=119  Identities=45%  Similarity=0.766  Sum_probs=113.7

Q ss_pred             CceeccCCCCceEEEEEecCCCCCCCCCCCcchHHHHhcCccceEEecCccceEEeeeeCCCCCCcccchhhhhhceecc
Q psy5955           1 MDCVKQEPGGLGARCVFITDAKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQVEHAYINALTR   80 (134)
Q Consensus         1 vnClR~Epgg~~iR~vfi~d~~ap~f~~~~~~y~~ql~~dL~~NV~r~G~WGSyRHl~l~~~~~~~~~~~~hayvN~l~r   80 (134)
                      ||||++|+|| ..||++++|.++|+|++.+++|++||+|||++||||||.||||||++++  .+++..++||||||+|+|
T Consensus      1347 ~~Clk~E~gg-~~R~~~~~d~s~p~~~l~~~~~~k~le~DLv~NvyrdGaWGs~RHl~le--~~~~~~~~ehAfvntLtr 1423 (2376)
T KOG1202|consen 1347 MNCLKRENGG-TLRLVLLSDLSVPEFSLGSAEYQKQLEKDLVMNVYRDGAWGSFRHLKLE--EDKPELPVEHAFVNTLTR 1423 (2376)
T ss_pred             hhHhhhcCCC-eEEEEEeecCCCCcccCCCHHHHHHHHhhhhhhhhhcCcccceeeeEec--ccCCCcchHHHHHHHhhh
Confidence            6999999999 8999999999999999999999999999999999999999999999999  667778999999999999


Q ss_pred             ccccceeeeeccccccccccccccceeEeEEEEccCccccccce
Q psy5955          81 GDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLK  124 (134)
Q Consensus        81 GDLsSlrWie~p~~~~~~~~~~~~~~~~~vyy~~ln~gDl~sl~  124 (134)
                      ||||||||||+|+++.+|  ..++.++|.|||++|||||+|++.
T Consensus      1424 GDlsSlrWies~~~~a~~--~~~~~e~CtVYYAplNFRDiMLas 1465 (2376)
T KOG1202|consen 1424 GDLSSLRWIESPLRHAQP--TCPGLELCTVYYAPLNFRDIMLAS 1465 (2376)
T ss_pred             ccccceeeeecchhhcCC--CCCCCceeEEEeccccHHHHHHhc
Confidence            999999999999998877  778899999999999999999874

>KOG1202|consensus

Probab=98.89  E-value=3.5e-10  Score=107.99  Aligned_cols=82  Identities=33%  Similarity=0.538  Sum_probs=66.4

Q ss_pred             cceEEecCccceEEeeeeCCCCCCc-ccc----------hhhhhhceeccccccceeeeeccccccccccccccceeEeE
Q psy5955          42 LYNVYRAGTWGSMRHILLDTTPDNA-TLQ----------VEHAYINALTRGDLASLKWIEGPLSFYNITSVILLLQIEHA  110 (134)
Q Consensus        42 ~~NV~r~G~WGSyRHl~l~~~~~~~-~~~----------~~hayvN~l~rGDLsSlrWie~p~~~~~~~~~~~~~~~~~v  110 (134)
                      +|||+|....|..|-..+.  +.++ .++          ..+..+|+++.|.|+|+||+....       +++..+.+|+
T Consensus      1346 L~~Clk~E~gg~~R~~~~~--d~s~p~~~l~~~~~~k~le~DLv~NvyrdGaWGs~RHl~le~-------~~~~~~~ehA 1416 (2376)
T KOG1202|consen 1346 LMNCLKRENGGTLRLVLLS--DLSVPEFSLGSAEYQKQLEKDLVMNVYRDGAWGSFRHLKLEE-------DKPELPVEHA 1416 (2376)
T ss_pred             HhhHhhhcCCCeEEEEEee--cCCCCcccCCCHHHHHHHHhhhhhhhhhcCcccceeeeEecc-------cCCCcchHHH
Confidence            4799999999988877665  3222 222          346779999999999999998864       3457789999


Q ss_pred             EEEccCccccccceeeccCCCC
Q psy5955         111 YINALTRGDLASLKWIEGPLSF  132 (134)
Q Consensus       111 yy~~ln~gDl~sl~w~~~~~~~  132 (134)
                      |+|+|++|||+|++|||+|++.
T Consensus      1417 fvntLtrGDlsSlrWies~~~~ 1438 (2376)
T KOG1202|consen 1417 FVNTLTRGDLSSLRWIESPLRH 1438 (2376)
T ss_pred             HHHHhhhccccceeeeecchhh
Confidence            9999999999999999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
2vz8_A	2512	Crystal Structure Of Mammalian Fatty Acid Synthase		8e-19

>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase Length = 2512

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 61/99 (61%), Gaps = 6/99 (6%)
Query: 1    MDCVKQEPGGLGARCVFITD----AKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRH 56
            ++C+++EPGG   RCV +++    +  P   PSS     +L  DL+ NVYR G WG+ RH
Sbjct: 1457 VNCLRKEPGGHRIRCVLVSNLSSTSPAPEMHPSSSELQKVLQGDLVMNVYRDGAWGAFRH 1516
Query: 57   ILLDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLSF 95
              L+   D    Q EHA++N L+RGDL+S++W+  PL +
Sbjct: 1517 FPLEQ--DRPEKQTEHAFVNVLSRGDLSSIRWVCSPLHY 1553

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	1e-22
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	9e-07

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 91.5 bits (227), Expect = 1e-22
 Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 6/96 (6%)

Query: 3    CVKQEPGGLGARCVFITD----AKQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHIL 58
            C+++EPGG   RCV +++    +  P   PSS     +L  DL+ NVYR G WG+ RH  
Sbjct: 1459 CLRKEPGGHRIRCVLVSNLSSTSPAPEMHPSSSELQKVLQGDLVMNVYRDGAWGAFRHFP 1518

Query: 59   LDTTPDNATLQVEHAYINALTRGDLASLKWIEGPLS 94
            L+   D    Q EHA++N L+RGDL+S++W+  PL 
Sbjct: 1519 LE--QDRPEKQTEHAFVNVLSRGDLSSIRWVCSPLH 1552

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 45.5 bits (108), Expect = 9e-07
 Identities = 13/71 (18%), Positives = 21/71 (29%)

Query: 24  PPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQVEHAYINALTRGDL 83
           P  +   P    +LA        R G   + R   L +             + A   G L
Sbjct: 162 PEPAQLLPALPGVLACGEPQLALRRGGAHAPRLAGLGSDDVLPVPDGTGWRLEATRPGSL 221

Query: 84  ASLKWIEGPLS 94
             L  ++ P +
Sbjct: 222 DGLALVDEPTA 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.26

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.26  E-value=1.6e-12  Score=129.15  Aligned_cols=119  Identities=36%  Similarity=0.726  Sum_probs=99.4

Q ss_pred             ceeccCCCCceEEEEEecCC----CCCCCCCCCcchHHHHhcCccceEEecCccceEEeeeeCCCCCCcccchhhhhhce
Q psy5955           2 DCVKQEPGGLGARCVFITDA----KQPPFSPSSPTYAPLLAKDLLYNVYRAGTWGSMRHILLDTTPDNATLQVEHAYINA   77 (134)
Q Consensus         2 nClR~Epgg~~iR~vfi~d~----~ap~f~~~~~~y~~ql~~dL~~NV~r~G~WGSyRHl~l~~~~~~~~~~~~hayvN~   77 (134)
                      +|||.|+.+.+++++++.+.    .+|.|+..+.+|.++++.|+..|++|+|.||.+||++++  ...+....+++++++
T Consensus      1458 r~l~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~R~~~~~--~~~~~~~~~~~~l~~ 1535 (2512)
T 2vz8_A         1458 NCLRKEPGGHRIRCVLVSNLSSTSPAPEMHPSSSELQKVLQGDLVMNVYRDGAWGAFRHFPLE--QDRPEKQTEHAFVNV 1535 (2512)
T ss_dssp             HHHTTSGGGTTSCCEEEECCCCSTTCCCCCCSSSHHHHHHHSCCSEEEEETTEEEEECCEECC--CCCCEEEESCEEEEE
T ss_pred             HHHHhcCCCCCEEEEEecCCcccccccccchhhHHHHHHHhcCCceEEEEcCccceEEEeecc--cccccccccceEEEc
Confidence            69999999999999999875    578888889999999999999999999999999999987  333333467889999


Q ss_pred             eccccccceeeeeccccccccccccccceeEeEEEEccCccccccce
Q psy5955          78 LTRGDLASLKWIEGPLSFYNITSVILLLQIEHAYINALTRGDLASLK  124 (134)
Q Consensus        78 l~rGDLsSlrWie~p~~~~~~~~~~~~~~~~~vyy~~ln~gDl~sl~  124 (134)
                      .++|+|+||+|++.|.....+  ..++..++++.++.+|++|++...
T Consensus      1536 ~~~g~l~sl~~~~~~~~~~~~--l~~~eVlVkV~aaglN~~Dv~~~~ 1580 (2512)
T 2vz8_A         1536 LSRGDLSSIRWVCSPLHYALP--ASCQDRLCSVYYTSLNFRDVMLAT 1580 (2512)
T ss_dssp             SSTTCTTSEEEEECTTTTCCC--HHHHTTEEEEEEEECCHHHHHHHH
T ss_pred             cCCCCcCceEEEecCcccccC--CCCCceEEEEEecccCHHHHHHHh
Confidence            999999999999987543111  124678999999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00