Psyllid ID: psy5982

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSGLPNTRIANLSG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccEEEEEcccccccccccccccccccccccccccHHHHHHcccccccccccEEccccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEccHHHHHHcccHHHHHHHEcccEEEEEccccccccccHHHHccccHHHHHHHHHHHHHccccEEEEEccc
Coil and Loop (DISEMBL)
MTDKKKTALGRLKEQLLKLEVQETdkeenktialgtsklnyldprisvaWYNLGFDFynwsgktkKVIKVEsfnslpsqAIKRRIdwdlsglpntrianlsg
Flexible Loop (DISEMBL)
mtdkkktalgrlkeqllklevqetdkeenktialgtsklnyldPRISVAWYNLGFDFYNWSGKTKKVIKVesfnslpsqaikrridwdlsglpntrianlsg
Low Complexity Region (SEG)
MTDKKKTALGRlkeqllklevqeTDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSGLPNTRIANLSG
Disordered region (IsUnstruct)
******************************TIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSGL**********
Disordered Region (DISOPRED)
**DK***ALGRLKE*******************LGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSGLPNTRIANLS*
Disordered Region (DISEMBL)
********LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSGLPNTRIANLSG
Disordered Region (DISPRO)
MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSGLPNTRIANLS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTDKKKTAxxxxxxxxxxxxxxxxxxxxxKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSGLPNTRIANLSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
P41512	829	DNA topoisomerase 1 OS=Xe	N/A	N/A	0.490	0.060	0.74	4e-15
Q07050	767	DNA topoisomerase 1 OS=Cr	yes	N/A	0.490	0.065	0.74	8e-15
P11387	765	DNA topoisomerase 1 OS=Ho	yes	N/A	0.490	0.065	0.74	9e-15
Q7YR26	767	DNA topoisomerase 1 OS=Ch	N/A	N/A	0.490	0.065	0.74	9e-15
Q9WUL0	767	DNA topoisomerase 1 OS=Ra	yes	N/A	0.490	0.065	0.74	9e-15
Q04750	767	DNA topoisomerase 1 OS=Mu	yes	N/A	0.490	0.065	0.74	9e-15
P30189	972	DNA topoisomerase 1 OS=Dr	yes	N/A	0.470	0.049	0.770	3e-14
A9Q1D5	601	DNA topoisomerase I, mito	no	N/A	0.470	0.079	0.708	8e-13
Q969P6	601	DNA topoisomerase I, mito	no	N/A	0.470	0.079	0.708	8e-13
O17966	806	DNA topoisomerase 1 OS=Ca	no	N/A	0.470	0.059	0.666	2e-11

>sp|P41512|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 1   MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ R++EQL+KLEVQ TD+EENK IALGTSKLNYLDPRISVAW
Sbjct: 739 LVESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAW 788

Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone.
Xenopus laevis (taxid: 8355)
EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 2

>sp|Q07050|TOP1_CRIGR DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 1   MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct: 685 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 734

Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Cricetulus griseus (taxid: 10029)

EC: 5

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: .

EC: 2

>sp|P11387|TOP1_HUMAN DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 1   MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct: 683 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 732

Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity). Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: .

EC: 2

>sp|Q7YR26|TOP1_CHLAE DNA topoisomerase 1 OS=Chlorocebus aethiops GN=TOP1 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 1   MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct: 685 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 734

Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Chlorocebus aethiops (taxid: 9534)

EC: 5

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9WUL0|TOP1_RAT DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 1   MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct: 685 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 734

Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: .

EC: 2

>sp|Q04750|TOP1_MOUSE DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 44/50 (88%)

Query: 1   MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct: 685 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 734

Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: .

EC: 2

>sp|P30189|TOP1_DROME DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query: 3   DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           +KK   L RL++QL KLE+QETD++ENKTIALGTSKLNYLDPRISVAW
Sbjct: 892 EKKGKQLERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAW 939

Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone.

Drosophila melanogaster (taxid: 7227)

EC: 5

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: .

EC: 2

>sp|A9Q1D5|TOP1M_PANTR DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 3   DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           +KK+  L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRIS+AW
Sbjct: 521 EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 568

Releases the supercoiling and torsional tension of DNA introduced during duplication of mitochondrial DNA by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone.

Pan troglodytes (taxid: 9598)

EC: 5

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: .

EC: 2

>sp|Q969P6|TOP1M_HUMAN DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 41/48 (85%)

Query: 3   DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           +KK+  L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRIS+AW
Sbjct: 521 EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 568

Releases the supercoiling and torsional tension of DNA introduced during duplication of mitochondrial DNA by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: .

EC: 2

>sp|O17966|TOP1_CAEEL DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 39/48 (81%)

Query: 3   DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           +K +    RLKEQL KL++  TDK+ENK IALGTSKLNY+DPRI+VAW
Sbjct: 723 EKAQKKYDRLKEQLKKLKISRTDKDENKQIALGTSKLNYIDPRITVAW 770

Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone.

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
242016037	961	DNA topoisomerase, putative [Pediculus h	0.607	0.064	0.742	2e-16
389611807	279	topoisomerase, partial [Papilio xuthus]	0.480	0.175	0.877	6e-16
304273979	241	topoisomerase I [Ontholestes murinus]	0.617	0.261	0.671	1e-15
328723881	747	PREDICTED: DNA topoisomerase 1-like isof	0.470	0.064	0.895	1e-15
328723887	734	PREDICTED: DNA topoisomerase 1-like isof	0.470	0.065	0.895	2e-15
328723883	677	PREDICTED: DNA topoisomerase 1-like isof	0.470	0.070	0.895	2e-15
381143731	247	topoisomerase I, partial [Bembidion irid	0.637	0.263	0.652	2e-15
304273999	241	topoisomerase I [Quedius cruentus]	0.490	0.207	0.82	2e-15
189094063	234	topoisomerase I [Sialis sp. ALW-2008]	0.490	0.213	0.8	2e-15
381143883	247	topoisomerase I, partial [Bembidion trec	0.637	0.263	0.652	2e-15

>gi|242016037|ref|XP_002428645.1| DNA topoisomerase, putative [Pediculus humanus corporis] gi|212513308|gb|EEB15907.1| DNA topoisomerase, putative [Pediculus humanus corporis]

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 53/66 (80%), Gaps = 4/66 (6%)

Query: 4   KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW---YNLGFD-FYN 59
           KKK  L RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW   YN+  +  YN
Sbjct: 882 KKKKQLDRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWCKKYNVPIEKIYN 941

Query: 60  WSGKTK 65
            + + K
Sbjct: 942 KTQRDK 947

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611807|dbj|BAM19469.1| topoisomerase, partial [Papilio xuthus]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/49 (87%), Positives = 46/49 (93%)

Query: 2   TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
            DKKKTAL RLKEQL KLE+QETD++ENKTIALGTSKLNYLDPRISVAW
Sbjct: 198 ADKKKTALERLKEQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAW 246

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|304273979|gb|ADM18427.1| topoisomerase I [Ontholestes murinus]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/67 (67%), Positives = 54/67 (80%), Gaps = 4/67 (5%)

Query: 3   DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW---YNLGFD-FY 58
           DKKK  L RLKEQL+KLE+QETD++ENKTIALGTSKLNYLDPRISVAW   +++  D  Y
Sbjct: 168 DKKKKQLERLKEQLVKLEIQETDRDENKTIALGTSKLNYLDPRISVAWCKKFDVPIDKIY 227

Query: 59  NWSGKTK 65
           N + + K
Sbjct: 228 NKTHRDK 234

Source: Ontholestes murinus

Species: Ontholestes murinus

Genus: Ontholestes

Family: Staphylinidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723881|ref|XP_001943026.2| PREDICTED: DNA topoisomerase 1-like isoform 1 [Acyrthosiphon pisum] gi|328723885|ref|XP_003247969.1| PREDICTED: DNA topoisomerase 1-like isoform 3 [Acyrthosiphon pisum]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 3   DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           +K+K AL RLKEQL KLEVQETDKEENKTIALGTSKLNYLDPRISVAW
Sbjct: 667 EKRKKALERLKEQLTKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 714

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723887|ref|XP_003247970.1| PREDICTED: DNA topoisomerase 1-like isoform 4 [Acyrthosiphon pisum]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 3   DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           +K+K AL RLKEQL KLEVQETDKEENKTIALGTSKLNYLDPRISVAW
Sbjct: 654 EKRKKALERLKEQLTKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 701

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723883|ref|XP_003247968.1| PREDICTED: DNA topoisomerase 1-like isoform 2 [Acyrthosiphon pisum]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 3   DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           +K+K AL RLKEQL KLEVQETDKEENKTIALGTSKLNYLDPRISVAW
Sbjct: 597 EKRKKALERLKEQLTKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 644

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|381143731|gb|AFF58526.1| topoisomerase I, partial [Bembidion iridescens]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 55/69 (79%), Gaps = 4/69 (5%)

Query: 1   MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW---YNLGFD- 56
           + DKKK  L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISVAW   Y++  + 
Sbjct: 177 VHDKKKKMLERLKEQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEK 236

Query: 57  FYNWSGKTK 65
            YN + + K
Sbjct: 237 IYNKTQRDK 245

Source: Bembidion iridescens

Species: Bembidion iridescens

Genus: Bembidion

Family: Carabidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|304273999|gb|ADM18437.1| topoisomerase I [Quedius cruentus]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/50 (82%), Positives = 46/50 (92%)

Query: 1   MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           + DKKK  L RLKEQL+KLE+QETD++ENKTIALGTSKLNYLDPRISVAW
Sbjct: 166 LFDKKKKMLQRLKEQLVKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215

Source: Quedius cruentus

Species: Quedius cruentus

Genus: Quedius

Family: Staphylinidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189094063|gb|ACD75859.1| topoisomerase I [Sialis sp. ALW-2008]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 47/50 (94%)

Query: 1   MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           + DKKK AL RL++QL+KLEVQETD++ENK+IALGTSKLNYLDPRISVAW
Sbjct: 177 VHDKKKKALERLRDQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAW 226

Source: Sialis sp. ALW-2008

Species: Sialis sp. ALW-2008

Genus: Sialis

Family: Sialidae

Order: Megaloptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|381143883|gb|AFF58602.1| topoisomerase I, partial [Bembidion trechiforme]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 55/69 (79%), Gaps = 4/69 (5%)

Query: 1   MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW---YNLGFD- 56
           + DKKK  L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISVAW   Y++  + 
Sbjct: 177 VHDKKKKMLERLKEQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKYDVPIEK 236

Query: 57  FYNWSGKTK 65
            YN + + K
Sbjct: 237 IYNKTQRDK 245

Source: Bembidion trechiforme

Species: Bembidion trechiforme

Genus: Bembidion

Family: Carabidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
UNIPROTKB|H0YAR3	111	TOP1MT "DNA topoisomerase I, m	0.470	0.432	0.562	1.4e-09
UNIPROTKB|F1NXP4	593	TOP1MT "Uncharacterized protei	0.460	0.079	0.638	6.2e-09
ZFIN|ZDB-GENE-060616-217	758	top1l "topoisomerase (DNA) I,	0.470	0.063	0.625	1.4e-08
UNIPROTKB|Q969P6	601	TOP1MT "DNA topoisomerase I, m	0.470	0.079	0.562	1.7e-08
UNIPROTKB|A9Q1D5	601	TOP1MT "DNA topoisomerase I, m	0.470	0.079	0.562	1.7e-08
ZFIN|ZDB-GENE-040624-2	600	top1mt "mitochondrial topoisom	0.490	0.083	0.56	2.2e-08
UNIPROTKB|Q90WS1	753	top1beta "Topoisomerase I beta	0.470	0.063	0.604	3e-08
UNIPROTKB|P11387	765	TOP1 "DNA topoisomerase 1" [Ho	0.490	0.065	0.56	3.9e-08
UNIPROTKB|Q07050	767	TOP1 "DNA topoisomerase 1" [Cr	0.490	0.065	0.56	3.9e-08
UNIPROTKB|Q7YR26	767	TOP1 "DNA topoisomerase 1" [Ch	0.490	0.065	0.56	3.9e-08

UNIPROTKB|H0YAR3 TOP1MT "DNA topoisomerase I, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 27/48 (56%), Positives = 32/48 (66%)

Query:     3 DKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
             +KK+  L +            TDKEENK +ALGTSKLNYLDPRIS+AW
Sbjct:    31 EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 78

GO:0003917 "DNA topoisomerase type I activity" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0006265 "DNA topological change" evidence=IEA

UNIPROTKB|F1NXP4 TOP1MT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 30/47 (63%), Positives = 31/47 (65%)

Query:     4 KKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
             KKK  L R            TDKEENK IALGTSKLNYLDPRIS+AW
Sbjct:   514 KKKKLLERLKEQLAKLNVQATDKEENKQIALGTSKLNYLDPRISIAW 560

GO:0003917 "DNA topoisomerase type I activity" evidence=IEA

GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0006265 "DNA topological change" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

ZFIN|ZDB-GENE-060616-217 top1l "topoisomerase (DNA) I, like" [Danio rerio (taxid:7955)]

 Score = 141 (54.7 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 30/48 (62%), Positives = 32/48 (66%)

Query:     3 DKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
             + KK AL R            TD+EENK IALGTSKLNYLDPRISVAW
Sbjct:   678 EAKKKALQRVEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAW 725

GO:0003677 "DNA binding" evidence=IEA

GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IBA

GO:0005694 "chromosome" evidence=IEA

GO:0006265 "DNA topological change" evidence=IEA;IBA

GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA

GO:0031298 "replication fork protection complex" evidence=IBA

GO:0007059 "chromosome segregation" evidence=IBA

GO:0005730 "nucleolus" evidence=IBA

GO:0006338 "chromatin remodeling" evidence=IBA

GO:0006260 "DNA replication" evidence=IBA

GO:0016853 "isomerase activity" evidence=IEA

UNIPROTKB|Q969P6 TOP1MT "DNA topoisomerase I, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 27/48 (56%), Positives = 32/48 (66%)

Query:     3 DKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
             +KK+  L +            TDKEENK +ALGTSKLNYLDPRIS+AW
Sbjct:   521 EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 568

GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003917 "DNA topoisomerase type I activity" evidence=IBA

GO:0005730 "nucleolus" evidence=IBA

GO:0006260 "DNA replication" evidence=IBA

GO:0006265 "DNA topological change" evidence=IBA

GO:0006338 "chromatin remodeling" evidence=IBA

GO:0007059 "chromosome segregation" evidence=IBA

GO:0031298 "replication fork protection complex" evidence=IBA

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|A9Q1D5 TOP1MT "DNA topoisomerase I, mitochondrial" [Pan troglodytes (taxid:9598)]

 Score = 139 (54.0 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 27/48 (56%), Positives = 32/48 (66%)

Query:     3 DKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
             +KK+  L +            TDKEENK +ALGTSKLNYLDPRIS+AW
Sbjct:   521 EKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 568

GO:0003917 "DNA topoisomerase type I activity" evidence=IBA

GO:0006260 "DNA replication" evidence=IBA

GO:0006265 "DNA topological change" evidence=IBA

GO:0042645 "mitochondrial nucleoid" evidence=IBA

GO:0005730 "nucleolus" evidence=IBA

GO:0006338 "chromatin remodeling" evidence=IBA

GO:0007059 "chromosome segregation" evidence=IBA

GO:0031298 "replication fork protection complex" evidence=IBA

ZFIN|ZDB-GENE-040624-2 top1mt "mitochondrial topoisomerase I" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 28/50 (56%), Positives = 34/50 (68%)

Query:     1 MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
             + +KK+ A+ R            TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct:   518 LVEKKQKAVQRLCDQLKKLQLQETDREENKVIALGTSKLNYLDPRITVAW 567

GO:0003677 "DNA binding" evidence=IEA

GO:0003917 "DNA topoisomerase type I activity" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0006265 "DNA topological change" evidence=IEA

GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

UNIPROTKB|Q90WS1 top1beta "Topoisomerase I beta" [Takifugu rubripes (taxid:31033)]

 Score = 138 (53.6 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 29/48 (60%), Positives = 32/48 (66%)

Query:     3 DKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
             + KK A+ R            TD+EENK IALGTSKLNYLDPRISVAW
Sbjct:   673 EAKKKAVQRIDDQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAW 720

GO:0003917 "DNA topoisomerase type I activity" evidence=IBA

GO:0005730 "nucleolus" evidence=IBA

GO:0006260 "DNA replication" evidence=IBA

GO:0006265 "DNA topological change" evidence=IBA

GO:0006338 "chromatin remodeling" evidence=IBA

GO:0007059 "chromosome segregation" evidence=IBA

GO:0031298 "replication fork protection complex" evidence=IBA

UNIPROTKB|P11387 TOP1 "DNA topoisomerase 1" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 28/50 (56%), Positives = 33/50 (66%)

Query:     1 MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
             + + KK A+ R            TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct:   683 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 732

GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0040016 "embryonic cleavage" evidence=IEA

GO:0043204 "perikaryon" evidence=IEA

GO:0006260 "DNA replication" evidence=IBA

GO:0006265 "DNA topological change" evidence=IDA;IBA

GO:0006338 "chromatin remodeling" evidence=IBA

GO:0007059 "chromosome segregation" evidence=IBA

GO:0031298 "replication fork protection complex" evidence=IBA

GO:0003677 "DNA binding" evidence=IDA

GO:0012501 "programmed cell death" evidence=NAS

GO:0016310 "phosphorylation" evidence=NAS

GO:0042493 "response to drug" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0003917 "DNA topoisomerase type I activity" evidence=IDA;IMP

GO:0000228 "nuclear chromosome" evidence=IDA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

UNIPROTKB|Q07050 TOP1 "DNA topoisomerase 1" [Cricetulus griseus (taxid:10029)]

 Score = 137 (53.3 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 28/50 (56%), Positives = 33/50 (66%)

Query:     1 MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
             + + KK A+ R            TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct:   685 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 734

GO:0003677 "DNA binding" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0003917 "DNA topoisomerase type I activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0006265 "DNA topological change" evidence=ISS

GO:0000228 "nuclear chromosome" evidence=ISS

UNIPROTKB|Q7YR26 TOP1 "DNA topoisomerase 1" [Chlorocebus aethiops (taxid:9534)]

 Score = 137 (53.3 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 28/50 (56%), Positives = 33/50 (66%)

Query:     1 MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
             + + KK A+ R            TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct:   685 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 734

GO:0003677 "DNA binding" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0003917 "DNA topoisomerase type I activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0006265 "DNA topological change" evidence=ISS

GO:0000228 "nuclear chromosome" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WUL0	TOP1_RAT	5, ., 9, 9, ., 1, ., 2	0.74	0.4901	0.0651	yes	N/A
Q04750	TOP1_MOUSE	5, ., 9, 9, ., 1, ., 2	0.74	0.4901	0.0651	yes	N/A
P11387	TOP1_HUMAN	5, ., 9, 9, ., 1, ., 2	0.74	0.4901	0.0653	yes	N/A
Q07050	TOP1_CRIGR	5, ., 9, 9, ., 1, ., 2	0.74	0.4901	0.0651	yes	N/A
Q54RC3	TOP1_DICDI	5, ., 9, 9, ., 1, ., 2	0.5777	0.4411	0.0503	yes	N/A
P30189	TOP1_DROME	5, ., 9, 9, ., 1, ., 2	0.7708	0.4705	0.0493	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
smart00435	391	smart00435, TOPEUc, DNA Topoisomerase I (eukaryota	8e-19
pfam14370	71	pfam14370, Topo_C_assoc, C-terminal topoisomerase	2e-18

>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota)

 Score = 78.9 bits (195), Expect = 8e-19
 Identities = 34/47 (72%), Positives = 42/47 (89%)

Query: 4   KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           KKK  + RL+E++ KLEVQ TDKEENKT+ALGTSK+NY+DPRI+VAW
Sbjct: 340 KKKKQIERLEERIEKLEVQATDKEENKTVALGTSKINYIDPRITVAW 386

DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras. Length = 391

>gnl|CDD|206538 pfam14370, Topo_C_assoc, C-terminal topoisomerase domain

 Score = 72.3 bits (178), Expect = 2e-18
 Identities = 28/39 (71%), Positives = 36/39 (92%)

Query: 12 LKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
          L+E++ KLE+Q  DKEENKT+ALGTSK+NY+DPRI+VAW
Sbjct: 1  LEERIKKLELQLKDKEENKTVALGTSKINYIDPRITVAW 39

This domain is found at the C-terminal of topoisomerase and other similar enzymes. Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PF14370	71	Topo_C_assoc: C-terminal topoisomerase domain; PDB	100.0
KOG0981|consensus	759		99.97
smart00435	391	TOPEUc DNA Topoisomerase I (eukaryota). DNA Topois	99.88

>PF14370 Topo_C_assoc: C-terminal topoisomerase domain; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A

Probab=100.00  E-value=7e-40  Score=219.64  Aligned_cols=71  Identities=44%  Similarity=0.786  Sum_probs=58.2

Q ss_pred             HHHHHHhhcchhhhhhccceeeeecccccccCchhhHhhhhcccCcccCCCCcceeeeccccccCchHHHHhhhhhhccC
Q psy5982          12 LKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSG   91 (102)
Q Consensus        12 l~erI~kl~~q~~dKeeNK~VALGTSKiNYiDPRItVAWCKk~~~~~~~~~~~~~~v~ie~~~~~~s~tl~~kf~Wa~~~   91 (102)
                      +++||+++++|+.+||+||+|||||||+|||||||||||||++ +           ||||   +|||+|||+||.|||++
T Consensus         1 ~~~ri~k~~~~~~~k~~~K~vaLgTSKiNYlDPRItvAWck~~-~-----------VPie---Kifsktlr~KF~WA~~~   65 (71)
T PF14370_consen    1 IKERIKKLELQLKDKEDNKTVALGTSKINYLDPRITVAWCKRH-E-----------VPIE---KIFSKTLREKFAWAMDV   65 (71)
T ss_dssp             -HHHHHHHHHHHHHHHHTSCE-SHHHHHHTS-HHHHHHHHHHT-T-------------GG---GTS-HHHHHHTHHHCCS
T ss_pred             ChHHHHHHHHHHHHHhhcceeecchhhhhhcCcHHHHHHHHHh-C-----------CcHH---HHhhHHHHHhhhHHHcC
Confidence            5799999999999999999999999999999999999999994 4           8988   56899999999999999


Q ss_pred             CCCccc
Q psy5982          92 LPNTRI   97 (102)
Q Consensus        92 ~p~~~~   97 (102)
                      +|+|+|
T Consensus        66 ~~~~~F   71 (71)
T PF14370_consen   66 DEDFKF   71 (71)
T ss_dssp             -TT---
T ss_pred             CCCCCC
Confidence            999987

...

>KOG0981|consensus

Probab=99.97  E-value=1.2e-32  Score=239.68  Aligned_cols=81  Identities=48%  Similarity=0.807  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHHHHHHhhcchhhhhhccceeeeecccccccCchhhHhhhhcccCcccCCCCcceeeeccccccCchHHH
Q psy5982           2 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAI   81 (102)
Q Consensus         2 ~Ek~e~~iekl~erI~kl~~q~~dKeeNK~VALGTSKiNYiDPRItVAWCKk~~~~~~~~~~~~~~v~ie~~~~~~s~tl   81 (102)
                      +|+++++++++++||++|++|++|||+||+|||||||||||||||||||||+ +|           ||||   +||++|+
T Consensus       678 ~Ek~~k~~~~l~eqi~kl~~q~~dkeenK~vALGTSKiNYiDPRitvawcKk-~d-----------VPiE---Kif~Kt~  742 (759)
T KOG0981|consen  678 VEKKEKKLERLEEQLKKLEIQMTDKEENKQVALGTSKLNYIDPRITVAWCKK-HD-----------VPIE---KIFTKTL  742 (759)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccchhhcceeecccccccccCCceeeeehhc-cC-----------CcHH---HHhhHHH
Confidence            6899999999999999999999999999999999999999999999999999 56           9999   5779999


Q ss_pred             HhhhhhhccCC-CCccc
Q psy5982          82 KRRIDWDLSGL-PNTRI   97 (102)
Q Consensus        82 ~~kf~Wa~~~~-p~~~~   97 (102)
                      |+||.|||+.. |++||
T Consensus       743 reKF~WA~d~~de~~~f  759 (759)
T KOG0981|consen  743 REKFAWAIDMADEEYRF  759 (759)
T ss_pred             HHHHHHHhhcCCcccCC
Confidence            99999999999 99987

>smart00435 TOPEUc DNA Topoisomerase I (eukaryota)

Probab=99.88  E-value=4.2e-24  Score=177.69  Aligned_cols=52  Identities=65%  Similarity=0.993  Sum_probs=49.9

Q ss_pred             hhHHHHHHHHHHHHHHhhcchhhhhhccceeeeecccccccCchhhHhhhhc
Q psy5982           2 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNL   53 (102)
Q Consensus         2 ~Ek~e~~iekl~erI~kl~~q~~dKeeNK~VALGTSKiNYiDPRItVAWCKk   53 (102)
                      +++.+++++++++||++|++|++|||+||+|||||||||||||||||||||+
T Consensus       338 ~~~~~k~~~~~~~~i~k~~~q~~~ke~nk~vaLgTSk~NY~DPRitvawck~  389 (391)
T smart00435      338 EEKKKKQIERLEERIEKLEVQATDKEENKTVALGTSKINYIDPRITVAWCKK  389 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCeeeecccchhhccCCcceeEeecc
Confidence            4667789999999999999999999999999999999999999999999999

DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
1lpq_A	564	Human Dna Topoisomerase I (70 Kda) In Non-Covalent		3e-09
1ej9_A	563	Crystal Structure Of Human Topoisomerase I Dna Comp		3e-09
1rr8_C	565	Structural Mechanisms Of Camptothecin Resistance By		1e-08
1nh3_A	563	Human Topoisomerase I Ara-C Complex Length = 563		1e-08
1r49_A	592	Human Topoisomerase I (Topo70) Double Mutant K532rY		1e-08
1a35_A	591	Human Topoisomerase IDNA COMPLEX Length = 591		1e-08
1k4s_A	592	Human Dna Topoisomerase I In Covalent Complex With		4e-08
1a31_A	591	Human Reconstituted Dna Topoisomerase I In Covalent		4e-08
1rrj_A	565	Structural Mechanisms Of Camptothecin Resistance By		4e-08
1seu_A	592	Human Dna Topoisomerase I (70 Kda) In Complex With		1e-07
2b9s_B	62	Crystal Structure Of Heterodimeric L. Donovani Topo		2e-04

>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex With A 22 Base Pair Dna Duplex Containing An 8-Oxog Lesion Length = 564

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 1   MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ R            TD+EENK IALGTSKLN+LDPRI+VAW
Sbjct: 482 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAW 531

>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex Length = 563

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 1   MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ R            TD+EENK IALGTSKLN+LDPRI+VAW
Sbjct: 481 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAW 530

>pdb|1RR8|C Chain C, Structural Mechanisms Of Camptothecin Resistance By Mutations In Human Topoisomerase I Length = 565

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 32/50 (64%)
Query: 1   MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ R            TD+EENK IALGTSKLN LDPRI+VAW
Sbjct: 483 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNXLDPRITVAW 532

>pdb|1NH3|A Chain A, Human Topoisomerase I Ara-C Complex Length = 563

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 32/50 (64%)
Query: 1   MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ R            TD+EENK IALGTSKLN LDPRI+VAW
Sbjct: 481 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNXLDPRITVAW 530

>pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F Length = 592

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 1   MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ R            TD+EENK IALGTSKLN+LDPRI+VAW
Sbjct: 510 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAW 559

>pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX Length = 591

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 1   MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ R            TD+EENK IALGTSKLN+LDPRI+VAW
Sbjct: 509 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNFLDPRITVAW 558

>pdb|1K4S|A Chain A, Human Dna Topoisomerase I In Covalent Complex With A 22 Base Pair Dna Duplex Length = 592

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 32/50 (64%)
Query: 1   MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ R            TD+EENK IALGTSKLN LDPRI+VAW
Sbjct: 510 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNXLDPRITVAW 559

>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent Complex With A 22 Base Pair Dna Duplex Length = 591

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 32/50 (64%)
Query: 1   MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ R            TD+EENK IALGTSKLN LDPRI+VAW
Sbjct: 509 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNXLDPRITVAW 558

>pdb|1RRJ|A Chain A, Structural Mechanisms Of Camptothecin Resistance By Mutations In Human Topoisomerase I Length = 565

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 1   MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ R            TD+EENK IALGTSKL+ LDPRI+VAW
Sbjct: 483 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLSXLDPRITVAW 532

>pdb|1SEU|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The Indolocarbazole Sa315f And Covalent Complex With A 22 Base Pair Dna Duplex Length = 592

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 1   MTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVAW 50
           + + KK A+ R            TD+EENK IALGTSKL+ LDPRI+VAW
Sbjct: 510 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLSXLDPRITVAW 559

>pdb|2B9S|B Chain B, Crystal Structure Of Heterodimeric L. Donovani Topoisomerase I-Vanadate-Dna Complex Length = 62

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 22/25 (88%)
Query: 26 KEENKTIALGTSKLNYLDPRISVAW 50
          K++NK ++LGTSK+NY+DPRI  +W
Sbjct: 7  KDDNKAVSLGTSKINYIDPRIICSW 31

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
1a31_A	591	Protein (topoisomerase I); topoisomerase I/DNA, DN	1e-11
2b9s_B	62	DNA topoisomerase I-like protein; vanadate complex	1e-09

>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A* Length = 591

 Score = 58.2 bits (140), Expect = 1e-11
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query: 3   DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAW 50
           + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+VAW
Sbjct: 511 ESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAW 558

>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani} Length = 62

 Score = 48.9 bits (116), Expect = 1e-09
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 20 EVQETDKEENKTIALGTSKLNYLDPRISVAW 50
          E     K++NK ++LGTSK+NY+DPRI  +W
Sbjct: 1  ENIIRIKDDNKAVSLGTSKINYIDPRIICSW 31

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
2b9s_B	62	DNA topoisomerase I-like protein; vanadate complex	100.0
1a31_A	591	Protein (topoisomerase I); topoisomerase I/DNA, DN	99.98

>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}

Probab=100.00  E-value=3e-36  Score=197.19  Aligned_cols=62  Identities=34%  Similarity=0.666  Sum_probs=48.6

Q ss_pred             cchhhhhhccceeeeecccccccCchhhHhhhhcccCcccCCCCcceeeeccccccCchHHHHhhhhhhccCCCCccc
Q psy5982          20 EVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSGLPNTRI   97 (102)
Q Consensus        20 ~~q~~dKeeNK~VALGTSKiNYiDPRItVAWCKk~~~~~~~~~~~~~~v~ie~~~~~~s~tl~~kf~Wa~~~~p~~~~   97 (102)
                      +.++++||+||+|||||||||||||||||||||++ +           ||||   +||++|||+||.||+++ |+|+|
T Consensus         1 ~~~~~~k~~~K~vaLgTSKiNYlDPRItvaWcKr~-~-----------VPie---Kif~ktlr~KF~WA~~~-~~~~F   62 (62)
T 2b9s_B            1 ENIIRIKDDNKAVSLGTSKINYIDPRIICSWAKAQ-D-----------VPIN---KIFSATIQKKFPWAMNA-ENFDF   62 (62)
T ss_dssp             ----------CEECCHHHHHHTSCHHHHHHHHHHT-T-----------CCGG---GTSCHHHHHHCTTTTTC-CSCCC
T ss_pred             CchhhhhhhCeeEecccchhhccCchhhhhhhhhc-C-----------CCHH---HHhhHHHHHhhhhhhcC-CCccC
Confidence            45789999999999999999999999999999994 4           9988   57799999999999999 99987

>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*

Probab=99.98  E-value=4.2e-34  Score=245.15  Aligned_cols=81  Identities=48%  Similarity=0.794  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHHHHHHHhhcchhhhhhccceeeeecccccccCchhhHhhhhcccCcccCCCCcceeeeccccccCchHHH
Q psy5982           2 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAI   81 (102)
Q Consensus         2 ~Ek~e~~iekl~erI~kl~~q~~dKeeNK~VALGTSKiNYiDPRItVAWCKk~~~~~~~~~~~~~~v~ie~~~~~~s~tl   81 (102)
                      +|+++++|+++++||.+|++|++|||+||+|||||||||||||||||||||+ ++           ||||   +|||+||
T Consensus       510 ~e~~~k~~~~~~~~i~k~~~q~~~ke~nk~vaLgTSKiNYlDPRItvawckk-~~-----------VPie---Kif~ktl  574 (591)
T 1a31_A          510 VESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKK-WG-----------VPIE---KIYNKTQ  574 (591)
T ss_dssp             ------------------------------------CTTTSCHHHHHHHHHH-TT-----------CCGG---GTSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcCeeeecccchhhccCchhheeehhh-cC-----------CCHH---HhccHHH
Confidence            5889999999999999999999999999999999999999999999999999 55           9988   5779999


Q ss_pred             HhhhhhhccC-CCCccc
Q psy5982          82 KRRIDWDLSG-LPNTRI   97 (102)
Q Consensus        82 ~~kf~Wa~~~-~p~~~~   97 (102)
                      |+||.|||++ .|+|+|
T Consensus       575 r~KF~WA~~~~~~~~~F  591 (591)
T 1a31_A          575 REKFAWAIDMADEDYEF  591 (591)
T ss_dssp             HHHTHHHHHHCCTTCCC
T ss_pred             HHhhhhHHhCCCCCCcC
Confidence            9999999997 899987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d1k4ta1	72	a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I	7e-09
d1k4ta2	263	d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA top	4e-04

>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Eukaryotic DNA topoisomerase I, dispensable insert domain
family: Eukaryotic DNA topoisomerase I, dispensable insert domain
domain: Eukaryotic DNA topoisomerase I, dispensable insert domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 7e-09
 Identities = 19/28 (67%), Positives = 24/28 (85%)

Query: 3  DKKKTALGRLKEQLLKLEVQETDKEENK 30
          + KK A+ RL+EQL+KLEVQ TD+EENK
Sbjct: 45 ESKKKAVQRLEEQLMKLEVQATDREENK 72

>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Eukaryotic DNA topoisomerase I, catalytic core
domain: Eukaryotic DNA topoisomerase I, catalytic core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 18/23 (78%), Positives = 20/23 (86%)

Query: 28  ENKTIALGTSKLNYLDPRISVAW 50
           +   IALGTSKLNYLDPRI+VAW
Sbjct: 208 KTFQIALGTSKLNYLDPRITVAW 230

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d1k4ta2	263	Eukaryotic DNA topoisomerase I, catalytic core {Hu	99.8
d1k4ta1	72	Eukaryotic DNA topoisomerase I, dispensable insert	97.24

>d1k4ta2 d.163.1.2 (A:431-640,A:713-765) Eukaryotic DNA topoisomerase I, catalytic core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Eukaryotic DNA topoisomerase I, catalytic core
domain: Eukaryotic DNA topoisomerase I, catalytic core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.1e-21  Score=147.83  Aligned_cols=55  Identities=36%  Similarity=0.629  Sum_probs=48.5

Q ss_pred             ccceeeeecccccccCchhhHhhhhcccCcccCCCCcceeeeccccccCchHHHHhhhhhhccC-CCCccc
Q psy5982          28 ENKTIALGTSKLNYLDPRISVAWYNLGFDFYNWSGKTKKVIKVESFNSLPSQAIKRRIDWDLSG-LPNTRI   97 (102)
Q Consensus        28 eNK~VALGTSKiNYiDPRItVAWCKk~~~~~~~~~~~~~~v~ie~~~~~~s~tl~~kf~Wa~~~-~p~~~~   97 (102)
                      .+-+|+|||||+|||||||+|||||++            .||||   +||++|||+||.|||++ .|+|+|
T Consensus       208 k~~~~~l~tsk~nYiDPri~~a~~k~~------------~~pie---k~~~k~~~~kf~wa~~~~~~~~~f  263 (263)
T d1k4ta2         208 KTFQIALGTSKLNYLDPRITVAWCKKW------------GVPIE---KIYNKTQREKFAWAIDMADEDYEF  263 (263)
T ss_dssp             TTGSBCCHHHHHHTSCHHHHHHHHHHH------------TCCGG---GTSCHHHHHHTHHHHHSCCTTCCC
T ss_pred             chhhhhhhhhHHhhcCHHHHHHHHHHc------------CCcHH---HHHHHHHHHHHHHHHHccccCCCC
Confidence            344688999999999999999999995            48988   46799999999999987 799987

>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Eukaryotic DNA topoisomerase I, dispensable insert domain
family: Eukaryotic DNA topoisomerase I, dispensable insert domain
domain: Eukaryotic DNA topoisomerase I, dispensable insert domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=7.4e-05  Score=48.20  Aligned_cols=29  Identities=66%  Similarity=0.879  Sum_probs=27.7

Q ss_pred             hhHHHHHHHHHHHHHHhhcchhhhhhccc
Q psy5982           2 TDKKKTALGRLKEQLLKLEVQETDKEENK   30 (102)
Q Consensus         2 ~Ek~e~~iekl~erI~kl~~q~~dKeeNK   30 (102)
                      +|+.+++++++++||.+|++|.+|+|+||
T Consensus        44 ~ekKkK~leRL~EQL~KLevqaTDkeENK   72 (72)
T d1k4ta1          44 VESKKKAVQRLEEQLMKLEVQATDREENK   72 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccccC
Confidence            68899999999999999999999999997