Psyllid ID: psy5

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MMLMIFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDEDEYGGTFEMAKEGFMTSFAAFLVSFSHQSVLNILKDK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHccHHHHHHHHccc
Coil and Loop (DISEMBL)
mmlmifvpqdefLDVIYWARQILGIILGIVwgfiplrgFIGLALFALTNAGLLYLYIVNYQcvdedeyggtfeMAKEGFMTSFAAFLcvdedeyggtfemAKEGFMTSFAAFLVSFSHQSVLNILKDK
Flexible Loop (DISEMBL)
MMLMIFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDEDEYGGTFEMAKEGFMTSFAAFLVSFSHQSVLNILKDK
Low Complexity Region (SEG)
MMLMIFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDEDEYGGTFEMAKEGFMTSFAAFLVSFSHQSVLNILKDK
Disordered region (IsUnstruct)
**LMIFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDEDEYGGTFEMAKEGFMTSFAAFLVSFSHQSVLNI****
Disordered Region (DISOPRED)
****IFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDEDEYGGTFEMAKEGFMTSFAAFLVSFSHQSVLNILKD*
Disordered Region (DISEMBL)
MMLMIFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDEDEYGGTFEMAKEGFMTSFAAFLVSFSHQSVLNILKDK
Disordered Region (DISPRO)
***MIFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDEDEYGGTFEMAKEGFMTSFAAFLVSFSHQSVLNILK**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMLMIFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDEDEYGGTFEMAKEGFMTSFAAFLVSFSHQSVLNILKDK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q9BUV8	137	Uncharacterized protein C	no	N/A	0.671	0.627	0.616	7e-27
Q9CQT9	129	Uncharacterized protein C	yes	N/A	0.632	0.627	0.641	1e-26

>sp|Q9BUV8|CT024_HUMAN Uncharacterized protein C20orf24 OS=Homo sapiens GN=C20orf24 PE=2 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 69/86 (80%)

Query: 9   QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
           +DEFLDVIYW RQI+ ++LG++WG +PLRGF+G+A F L NAG+LYLY  NY  +DE+EY
Sbjct: 38  KDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEY 97

Query: 69  GGTFEMAKEGFMTSFAAFLCVDEDEY 94
           GGT+E+ KEGFMTSFA F+    D +
Sbjct: 98  GGTWELTKEGFMTSFALFMVCVADSF 123

Homo sapiens (taxid: 9606)

>sp|Q9CQT9|CT024_MOUSE Uncharacterized protein C20orf24 homolog OS=Mus musculus PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 68/81 (83%)

Query: 9   QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
           +DEFLDVIYW RQI+ ++LG++WG +PLRGF+G+A F L NAG+LYLY  NY  +DE+EY
Sbjct: 38  KDEFLDVIYWFRQIIALVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEY 97

Query: 69  GGTFEMAKEGFMTSFAAFLCV 89
           GGT+E+ KEGFMTSFA F+ +
Sbjct: 98  GGTWELTKEGFMTSFALFMVI 118


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.330    0.146    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,268,804
Number of Sequences: 539616
Number of extensions: 1999762
Number of successful extensions: 4666
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4660
Number of HSP's gapped (non-prelim): 6
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
345325245	98	PREDICTED: uncharacterized protein C20or	0.632	0.826	0.679	2e-26
449269632	92	Putative protein C20orf24 like protein,	0.632	0.880	0.679	3e-26
326931709	107	PREDICTED: uncharacterized protein C20or	0.632	0.757	0.666	3e-26
321477745	117	hypothetical protein DAPPUDRAFT_304748 [	0.687	0.752	0.636	4e-26
224077284	134	PREDICTED: uncharacterized protein C20or	0.632	0.604	0.666	6e-26
395505374	159	PREDICTED: uncharacterized protein C20or	0.648	0.522	0.626	6e-26
334310901	159	PREDICTED: uncharacterized protein C20or	0.648	0.522	0.626	7e-26
119596531	121	chromosome 20 open reading frame 24, iso	0.640	0.677	0.646	7e-26
195029001	136	GH21884 [Drosophila grimshawi] gi|193903	0.617	0.580	0.683	7e-26
327271676	144	PREDICTED: uncharacterized protein C20or	0.632	0.562	0.641	7e-26

>gi|345325245|ref|XP_001508570.2| PREDICTED: uncharacterized protein C20orf24 homolog, partial [Ornithorhynchus anatinus]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 70/81 (86%)

Query: 9  QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
          QDEFLDVIYW RQI+ +ILG++WG +PL+GFIG+A+F L NAG+LYLY  ++Q +DE+EY
Sbjct: 7  QDEFLDVIYWFRQIIAVILGVIWGVVPLKGFIGIAIFCLINAGILYLYFSSFQQIDEEEY 66

Query: 69 GGTFEMAKEGFMTSFAAFLCV 89
          GGT+E+ KEGFMTSFA FL V
Sbjct: 67 GGTWELTKEGFMTSFALFLVV 87

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449269632|gb|EMC80389.1| Putative protein C20orf24 like protein, partial [Columba livia]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 70/81 (86%)

Query: 9  QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
          QDEFLDVIYW RQI+ +ILGI+WG +PL+GF+G+A+F L NAG+LYLY  ++Q +DE+EY
Sbjct: 1  QDEFLDVIYWFRQIIAVILGIIWGVVPLKGFVGIAVFCLINAGVLYLYFSSFQQIDEEEY 60

Query: 69 GGTFEMAKEGFMTSFAAFLCV 89
          GGT+E+ KEGFMTSFA FL V
Sbjct: 61 GGTWELTKEGFMTSFALFLVV 81

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326931709|ref|XP_003211968.1| PREDICTED: uncharacterized protein C20orf24 homolog [Meleagris gallopavo]

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 70/81 (86%)

Query: 9  QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
          QDEFLDVIYW RQI+ +ILG++WG +PL+GF+G+A+F L NAG+LYLY  ++Q +DE+EY
Sbjct: 16 QDEFLDVIYWFRQIIAVILGVIWGVVPLKGFVGIAIFCLINAGVLYLYFSSFQQIDEEEY 75

Query: 69 GGTFEMAKEGFMTSFAAFLCV 89
          GGT+E+ KEGFMTSFA FL V
Sbjct: 76 GGTWELTKEGFMTSFALFLVV 96

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321477745|gb|EFX88703.1| hypothetical protein DAPPUDRAFT_304748 [Daphnia pulex]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 70/88 (79%)

Query: 9   QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
           +DEFLDVIYWARQI+ +ILG++WG   L+GFIGLALFAL NAG+LY+Y  ++Q +DE+EY
Sbjct: 27  KDEFLDVIYWARQIIAVILGLIWGVFSLQGFIGLALFALANAGILYVYFTSFQSIDEEEY 86

Query: 69  GGTFEMAKEGFMTSFAAFLCVDEDEYGG 96
           GG +E+ KEGFMTSFA FL      Y G
Sbjct: 87  GGVWELTKEGFMTSFAGFLVTWTIIYSG 114

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|224077284|ref|XP_002194118.1| PREDICTED: uncharacterized protein C20orf24 homolog [Taeniopygia guttata]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 70/81 (86%)

Query: 9   QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
           +DEFLDVIYW RQI+ +ILGI+WG +PL+GF+G+A+F L NAG+LYLY  ++Q +DE+EY
Sbjct: 43  KDEFLDVIYWFRQIIAVILGIIWGVVPLKGFVGIAVFCLINAGVLYLYFSSFQQIDEEEY 102

Query: 69  GGTFEMAKEGFMTSFAAFLCV 89
           GGT+E+ KEGFMTSFA FL V
Sbjct: 103 GGTWELTKEGFMTSFALFLVV 123

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395505374|ref|XP_003757017.1| PREDICTED: uncharacterized protein C20orf24 homolog [Sarcophilus harrisii]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 71/83 (85%)

Query: 7   VPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDED 66
           V QDEFLDVIYW RQI+ ++LG++WG +PL+GF+G+A+F L NAG+LYLY  ++Q +DE+
Sbjct: 66  VLQDEFLDVIYWFRQIIAVVLGVIWGVVPLKGFVGIAVFCLINAGILYLYFSSFQQIDEE 125

Query: 67  EYGGTFEMAKEGFMTSFAAFLCV 89
           +YGGT+E+ KEGFMTSFA F+ V
Sbjct: 126 DYGGTWELTKEGFMTSFALFMVV 148

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|334310901|ref|XP_003339552.1| PREDICTED: uncharacterized protein C20orf24 homolog isoform 2 [Monodelphis domestica]

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 71/83 (85%)

Query: 7   VPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDED 66
           V QDEFLDVIYW RQI+ ++LG++WG +PL+GF+G+A+F L NAG+LYLY  ++Q +DE+
Sbjct: 66  VLQDEFLDVIYWFRQIIAVVLGVIWGVVPLKGFVGIAVFCLINAGILYLYFSSFQQIDEE 125

Query: 67  EYGGTFEMAKEGFMTSFAAFLCV 89
           +YGGT+E+ KEGFMTSFA F+ V
Sbjct: 126 DYGGTWELTKEGFMTSFALFMVV 148

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|119596531|gb|EAW76125.1| chromosome 20 open reading frame 24, isoform CRA_e [Homo sapiens]

 Score =  122 bits (305), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 69/82 (84%)

Query: 9   QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
           +DEFLDVIYW RQI+ ++LG++WG +PLRGF+G+A F L NAG+LYLY  NY  +DE+EY
Sbjct: 38  KDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEY 97

Query: 69  GGTFEMAKEGFMTSFAAFLCVD 90
           GGT+E+ KEGFMTSFA F+C+ 
Sbjct: 98  GGTWELTKEGFMTSFALFMCLS 119

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195029001|ref|XP_001987363.1| GH21884 [Drosophila grimshawi] gi|193903363|gb|EDW02230.1| GH21884 [Drosophila grimshawi]

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 67/79 (84%)

Query: 9   QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
           +DEFLDVIYW+RQ+ GIILGIVWG +PL+GF+GL LFA  + G++YLY +N+Q VDED Y
Sbjct: 37  KDEFLDVIYWSRQVFGIILGIVWGIVPLKGFLGLVLFAGISCGVVYLYAINFQNVDEDAY 96

Query: 69  GGTFEMAKEGFMTSFAAFL 87
           GG +E+ KEGFMTSFA FL
Sbjct: 97  GGAWELVKEGFMTSFAGFL 115

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327271676|ref|XP_003220613.1| PREDICTED: uncharacterized protein C20orf24 homolog [Anolis carolinensis]

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 70/81 (86%)

Query: 9   QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
           +DEFLDVIYW RQI+ +ILG++WG +PL+GF+G+A+F L NAG+LYLY  ++Q +DE+EY
Sbjct: 53  KDEFLDVIYWFRQIIAVILGVIWGIVPLKGFVGIAIFCLINAGVLYLYFSSFQQIDEEEY 112

Query: 69  GGTFEMAKEGFMTSFAAFLCV 89
           GGT+E+ KEGF+TSFA FL V
Sbjct: 113 GGTWELTKEGFVTSFALFLVV 133

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
UNIPROTKB|F1NXV3	135	C20H20orf24 "Uncharacterized p	0.632	0.6	0.654	3.1e-28
UNIPROTKB|H0YNI0	155	TGIF2-C20ORF24 "Protein TGIF2-	0.648	0.535	0.650	5e-28
UNIPROTKB|Q9BUV8	137	C20orf24 "Uncharacterized prot	0.632	0.591	0.658	1e-27
RGD|1307752	129	RGD1307752 "similar to RIKEN c	0.632	0.627	0.641	1.3e-27
MGI|MGI:1914638	129	1110008F13Rik "RIKEN cDNA 1110	0.632	0.627	0.641	2.2e-27
UNIPROTKB|Q3T187	129	RIP5 "Uncharacterized protein"	0.632	0.627	0.629	3.5e-27
WB|WBGene00018431	121	F44E7.9 [Caenorhabditis elegan	0.617	0.652	0.379	3e-14
TAIR|locus:2148353	130	AT5G59410 "AT5G59410" [Arabido	0.617	0.607	0.392	9.1e-13
TAIR|locus:2066081	133	AT2G29020 "AT2G29020" [Arabido	0.617	0.593	0.367	1.9e-12
DICTYBASE|DDB_G0289011	113	DDB_G0289011 "putative Rab5-in	0.585	0.663	0.337	2.9e-09

UNIPROTKB|F1NXV3 C20H20orf24 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 53/81 (65%), Positives = 70/81 (86%)

Query:     9 QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
             +DEFLDVIYW RQI+ +ILG++WG +PL+GF+G+A+F L NAG+LYLY  ++Q +DE+EY
Sbjct:    44 KDEFLDVIYWFRQIIAVILGVIWGVVPLKGFVGIAIFCLINAGVLYLYFSSFQQIDEEEY 103

Query:    69 GGTFEMAKEGFMTSFAAFLCV 89
             GGT+E+ KEGFMTSFA FL V
Sbjct:   104 GGTWELTKEGFMTSFALFLVV 124

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|H0YNI0 TGIF2-C20ORF24 "Protein TGIF2-C20ORF24" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 54/83 (65%), Positives = 69/83 (83%)

Query:     7 VPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDED 66
             V QDEFLDVIYW RQI+ ++LG++WG +PLRGF+G+A F L NAG+LYLY  NY  +DE+
Sbjct:    62 VLQDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEE 121

Query:    67 EYGGTFEMAKEGFMTSFAAFLCV 89
             EYGGT+E+ KEGFMTSFA F+ +
Sbjct:   122 EYGGTWELTKEGFMTSFALFMVI 144

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9BUV8 C20orf24 "Uncharacterized protein C20orf24" [Homo sapiens (taxid:9606)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 54/82 (65%), Positives = 69/82 (84%)

Query:     9 QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
             +DEFLDVIYW RQI+ ++LG++WG +PLRGF+G+A F L NAG+LYLY  NY  +DE+EY
Sbjct:    38 KDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEY 97

Query:    69 GGTFEMAKEGFMTSFAAFL-CV 89
             GGT+E+ KEGFMTSFA F+ CV
Sbjct:    98 GGTWELTKEGFMTSFALFMVCV 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1307752 RGD1307752 "similar to RIKEN cDNA 1110008F13" [Rattus norvegicus (taxid:10116)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 52/81 (64%), Positives = 68/81 (83%)

Query:     9 QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
             +DEFLDVIYW RQI+ ++LG++WG +PLRGF+G+A F L NAG+LYLY  NY  +DE+EY
Sbjct:    38 KDEFLDVIYWFRQIIAVVLGVIWGILPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEY 97

Query:    69 GGTFEMAKEGFMTSFAAFLCV 89
             GGT+E+ KEGFMTSFA F+ +
Sbjct:    98 GGTWELTKEGFMTSFALFMVI 118

GO:0005739 "mitochondrion" evidence=IEA;ISO

MGI|MGI:1914638 1110008F13Rik "RIKEN cDNA 1110008F13 gene" [Mus musculus (taxid:10090)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 52/81 (64%), Positives = 68/81 (83%)

Query:     9 QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
             +DEFLDVIYW RQI+ ++LG++WG +PLRGF+G+A F L NAG+LYLY  NY  +DE+EY
Sbjct:    38 KDEFLDVIYWFRQIIALVLGVIWGVLPLRGFLGIAGFCLINAGVLYLYFSNYLQIDEEEY 97

Query:    69 GGTFEMAKEGFMTSFAAFLCV 89
             GGT+E+ KEGFMTSFA F+ +
Sbjct:    98 GGTWELTKEGFMTSFALFMVI 118

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3T187 RIP5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 51/81 (62%), Positives = 68/81 (83%)

Query:     9 QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
             +DEFLDVIYW RQI+ ++LG++WG +PLRGF+G+A F L NAG+LY+Y  NY  +DE+EY
Sbjct:    38 KDEFLDVIYWFRQIIAVVLGVIWGVLPLRGFLGIAGFCLINAGVLYVYFSNYLQIDEEEY 97

Query:    69 GGTFEMAKEGFMTSFAAFLCV 89
             GGT+E+ KEGFMTSFA F+ +
Sbjct:    98 GGTWELTKEGFMTSFALFMVI 118

GO:0005739 "mitochondrion" evidence=IEA

WB|WBGene00018431 F44E7.9 [Caenorhabditis elegans (taxid:6239)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 30/79 (37%), Positives = 54/79 (68%)

Query:     9 QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
             +DE LDV+YW +Q++ ++LG ++G   L G + L  +  T++ + + ++  +Q VDE+E 
Sbjct:    30 KDELLDVVYWGKQVISLLLGFIFGITSLTGVLVLVCYVGTSSVIAHHFVTKFQRVDEEEV 89

Query:    69 GGTFEMAKEGFMTSFAAFL 87
             GG +E++KEGF  +FA F+
Sbjct:    90 GGFWELSKEGFGAAFATFM 108

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2148353 AT5G59410 "AT5G59410" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 31/79 (39%), Positives = 50/79 (63%)

Query:     9 QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
             +D+  DV++W RQ++G+I G++WG IPL G I + LF   ++G++Y Y      VDE+++
Sbjct:    40 KDQLGDVLHWIRQVVGLISGLLWGSIPLVGGIWIILFLAISSGIVYGYYAMILKVDEEDF 99

Query:    69 GGTFEMAKEGFMTSFAAFL 87
             GG   + +EG   S   FL
Sbjct:   100 GGHAALLQEGLFASLTLFL 118

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2066081 AT2G29020 "AT2G29020" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 29/79 (36%), Positives = 51/79 (64%)

Query:     9 QDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEY 68
             +D+  DV++W RQ++G++ G++WG IPL G I L LF   ++G++Y Y      +DE+++
Sbjct:    43 KDQLGDVLHWIRQVVGLLCGLLWGAIPLVGGIWLLLFLAISSGIVYGYYALVLKIDEEDF 102

Query:    69 GGTFEMAKEGFMTSFAAFL 87
             GG   + ++G   S + FL
Sbjct:   103 GGHAALLQDGLFASLSLFL 121

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0289011 DDB_G0289011 "putative Rab5-interacting protein (Rab5ip)" [Dictyostelium discoideum (taxid:44689)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 26/77 (33%), Positives = 45/77 (58%)

Query:    11 EFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGG 70
             E    ++W RQI+ I++GI+ G IP+ GF G   F +   G + +Y      ++ED++  
Sbjct:    27 EIAQNVHWLRQIVSILVGIIVGSIPVIGFPGFIAFLIFTCGFVAIYYTKVLEIEEDDF-- 84

Query:    71 TFEMAKEGFMTSFAAFL 87
              +E+ +EGFM+S   F+
Sbjct:    85 KWELMREGFMSSLTIFV 101


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.146   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       128   0.00091  102 3  11 21  0.43    30
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  120 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:04
  No. of threads or processors used:  24
  Search cpu time:  12.33u 0.09s 12.42t   Elapsed:  00:00:13
  Total cpu time:  12.33u 0.09s 12.42t   Elapsed:  00:00:17
  Start:  Thu Aug 15 13:28:04 2013   End:  Thu Aug 15 13:28:21 2013

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CQT9	CT024_MOUSE	No assigned EC number	0.6419	0.6328	0.6279	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	128
pfam07019	81	pfam07019, Rab5ip, Rab5-interacting protein (Rab5i	6e-17

>gnl|CDD|148567 pfam07019, Rab5ip, Rab5-interacting protein (Rab5ip)

 Score = 69.5 bits (171), Expect = 6e-17
 Identities = 27/74 (36%), Positives = 45/74 (60%)

Query: 14 DVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFE 73
          DV+YW RQ++ ++ G++ G + L GF+G   + L + G  YLY      +DE+ +GG +E
Sbjct: 1  DVLYWVRQVISLLAGVIAGILGLTGFLGFIFYFLISLGTSYLYYAKVGKIDEEYFGGRWE 60

Query: 74 MAKEGFMTSFAAFL 87
          +  EG +T  A F+
Sbjct: 61 LFTEGLLTGLATFV 74

This family consists of several Rab5-interacting protein (RIP5 or Rab5ip) sequences. The ras-related GTPase rab5 is rate-limiting for homotypic early endosome fusion. Rab5ip represents a novel rab5 interacting protein that may function on endocytic vesicles as a receptor for rab5-GDP and participate in the activation of rab5. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
KOG3415|consensus	129		100.0
PF07019	81	Rab5ip: Rab5-interacting protein (Rab5ip)	99.93
KOG4455|consensus	110		99.76
KOG3415|consensus	129		99.16
PF07019	81	Rab5ip: Rab5-interacting protein (Rab5ip)	95.57
PF00584	57	SecE: SecE/Sec61-gamma subunits of protein translo	85.57
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	82.02
TIGR00964	55	secE_bact preprotein translocase, SecE subunit, ba	80.45

>KOG3415|consensus

Probab=100.00  E-value=2e-41  Score=250.26  Aligned_cols=96  Identities=50%  Similarity=0.935  Sum_probs=94.9

Q ss_pred             ccCChhhHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHhccCCccccccccceeeccchhhhh
Q psy5              5 IFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFA   84 (128)
Q Consensus         5 ~~~dKde~ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~~~~i~~~y~~~~~~idee~fgg~~el~~EGf~~sfa   84 (128)
                      +||||||++|||||+||++++++|++||++||+|+.|++.|+.+|+++.|.|+++++++|||+|||.||++|||||+|||
T Consensus        34 ~W~DKdellDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f~~issgIvy~y~~~~~~VDEee~GG~weL~kEGf~asfa  113 (129)
T KOG3415|consen   34 EWPDKDELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLFLGISSGIVYLYYANFLKVDEEEYGGHWELLKEGFMASFA  113 (129)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHhhhhHHHHHHHHHHhcCHHHhCcHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCceeee
Q psy5             85 AFLCVDEDEYGGTFEM  100 (128)
Q Consensus        85 ~Fll~W~~~Y~~~h~~  100 (128)
                      +|+++|++.|+..|++
T Consensus       114 ~FlvtWIi~Yt~~hyd  129 (129)
T KOG3415|consen  114 LFLVTWIIFYTLAHYD  129 (129)
T ss_pred             HHHHHHHHHHhhhccC
Confidence            9999999999999974

>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)

Probab=99.93  E-value=3e-26  Score=156.99  Aligned_cols=81  Identities=36%  Similarity=0.675  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHhccCCccccccccceeeccchhhhhhhhhhhhhc
Q psy5             14 DVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDEDE   93 (128)
Q Consensus        14 dvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~~~~i~~~y~~~~~~idee~fgg~~el~~EGf~~sfa~Fll~W~~~   93 (128)
                      |++||+||++|+++|++||++||||+.||++|++++.+++++++++.++.|++++++++|+.+||+++++++|+++|++.
T Consensus         1 dvi~~~r~~~a~~~Gi~aGILgLtg~~Gf~~f~~~~~~~s~~~~~~~~~~~~~~f~~~~~i~~~g~~~~l~~Fvl~Wtl~   80 (81)
T PF07019_consen    1 DVIYWCRQIIALLAGIAAGILGLTGLYGFIFFFLSSFLVSLLYYAKAGFPDEDYFGGPWEIFTEGFFSGLSTFVLFWTLF   80 (81)
T ss_pred             CHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHhhhhchHHHHHHHhhee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c
Q psy5             94 Y   94 (128)
Q Consensus        94 Y   94 (128)
                      |
T Consensus        81 Y   81 (81)
T PF07019_consen   81 Y   81 (81)
T ss_pred             C
Confidence            7

>KOG4455|consensus

Probab=99.76  E-value=7.1e-19  Score=128.40  Aligned_cols=87  Identities=17%  Similarity=0.211  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHhccCCccccccccceeeccchhhhhhhhhhhhh
Q psy5             13 LDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDED   92 (128)
Q Consensus        13 ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~~~~i~~~y~~~~~~idee~fgg~~el~~EGf~~sfa~Fll~W~~   92 (128)
                      .+++.++|+..|+++|++||||||||+.||++|++.+...+.++..|.+..+.+||.++..+++|+++.++++|++.|+.
T Consensus        23 ~kvl~f~Rt~~s~i~G~aAGILGltg~~GFi~Y~l~~~i~~il~~~K~~~~~~kyf~s~~~~f~~~f~~Gl~tyVl~Wtf  102 (110)
T KOG4455|consen   23 KKVLEFVRTSSSAIAGCAAGILGLTGLHGFIFYFLSVLILSILLVLKAGGQWGKYFQSRRNLFTESFLGGLTTYVLAWTF  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHCCCHHhhcCchhHHHHHHHhchHHHHHHHHHH
Confidence            47899999999999999999999999999999999988888888899999999999999999999999999999999999


Q ss_pred             ccCceee
Q psy5             93 EYGGTFE   99 (128)
Q Consensus        93 ~Y~~~h~   99 (128)
                      .|+.+|.
T Consensus       103 ~Y~lv~~  109 (110)
T KOG4455|consen  103 FYGLVHV  109 (110)
T ss_pred             Hhhhhcc
Confidence            9999885

>KOG3415|consensus

Probab=99.16  E-value=3.2e-11  Score=89.77  Aligned_cols=36  Identities=61%  Similarity=1.058  Sum_probs=34.2

Q ss_pred             hhhhhhhhhhhccCceeeeehhhhhhhhhHHhhhhh
Q psy5             82 SFAAFLCVDEDEYGGTFEMAKEGFMTSFAAFLVSFS  117 (128)
Q Consensus        82 sfa~Fll~W~~~Y~~~h~~~~~~~~~~~~~~~~~~~  117 (128)
                      -++.|+.+++++|++.|+++|||||||||.|||+|-
T Consensus        85 y~~~~~~VDEee~GG~weL~kEGf~asfa~FlvtWI  120 (129)
T KOG3415|consen   85 YYANFLKVDEEEYGGHWELLKEGFMASFALFLVTWI  120 (129)
T ss_pred             HHHHHHhcCHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999995

>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)

Probab=95.57  E-value=0.017  Score=39.25  Aligned_cols=69  Identities=25%  Similarity=0.496  Sum_probs=46.2

Q ss_pred             HHHHHHhh-cccccHHHHHHHHHHHHHHHHHHHHHhccCCccccccccceeeccchhhhhhhhhhhhhccCceeeeehhh
Q psy5             26 ILGIVWGF-IPLRGFIGLALFALTNAGLLYLYIVNYQCVDEDEYGGTFEMAKEGFMTSFAAFLCVDEDEYGGTFEMAKEG  104 (128)
Q Consensus        26 i~Gi~aGi-LgLtG~~Gf~~F~~~~~~i~~~y~~~~~~idee~fgg~~el~~EGf~~sfa~Fll~W~~~Y~~~h~~~~~~  104 (128)
                      +.++++|+ -|+-|+.|+..|+..-......-+.-+.                       .....+...+...+++.+||
T Consensus         9 ~~a~~~Gi~aGILgLtg~~Gf~~f~~~~~~~s~~~~~-----------------------~~~~~~~~~f~~~~~i~~~g   65 (81)
T PF07019_consen    9 IIALLAGIAAGILGLTGLYGFIFFFLSSFLVSLLYYA-----------------------KAGFPDEDYFGGPWEIFTEG   65 (81)
T ss_pred             HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHH-----------------------HhcCChhhhcCCHHHHHHhh
Confidence            45677775 4788888888777554433333222222                       11122366677889999999


Q ss_pred             hhhhhhHHhhhhh
Q psy5            105 FMTSFAAFLVSFS  117 (128)
Q Consensus       105 ~~~~~~~~~~~~~  117 (128)
                      +++++++|+++|.
T Consensus        66 ~~~~l~~Fvl~Wt   78 (81)
T PF07019_consen   66 FFSGLSTFVLFWT   78 (81)
T ss_pred             hhchHHHHHHHhh
Confidence            9999999999995

>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway

Probab=85.57  E-value=1.7  Score=27.44  Aligned_cols=13  Identities=15%  Similarity=0.353  Sum_probs=10.1

Q ss_pred             cccCChhhHHHHH
Q psy5              4 MIFVPQDEFLDVI   16 (128)
Q Consensus         4 ~~~~dKde~ldvI   16 (128)
                      -.||||+|+.+.-
T Consensus        16 v~WP~~~e~~~~t   28 (57)
T PF00584_consen   16 VTWPSRKELLKST   28 (57)
T ss_dssp             HHCCCTHHHHHHH
T ss_pred             hcCCCHHHHHHHH
Confidence            3699999987643

Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=82.02  E-value=1.6  Score=32.65  Aligned_cols=14  Identities=50%  Similarity=0.956  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHhhcc
Q psy5             22 ILGIILGIVWGFIP   35 (128)
Q Consensus        22 ilali~Gi~aGiLg   35 (128)
                      +.+|+.|++||++|
T Consensus        66 i~~Ii~gv~aGvIg   79 (122)
T PF01102_consen   66 IIGIIFGVMAGVIG   79 (122)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             eeehhHHHHHHHHH
Confidence            57889999999876

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial

Probab=80.45  E-value=3.4  Score=26.24  Aligned_cols=14  Identities=7%  Similarity=0.356  Sum_probs=10.9

Q ss_pred             cccCChhhHHHHHH
Q psy5              4 MIFVPQDEFLDVIY   17 (128)
Q Consensus         4 ~~~~dKde~ldvI~   17 (128)
                      -.||+|+|+.+.--
T Consensus        15 V~WPt~~e~~~~t~   28 (55)
T TIGR00964        15 VVWPSRKELITYTI   28 (55)
T ss_pred             CcCcCHHHHHhHHH
Confidence            46999999987543

This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
3mp7_B	61	Preprotein translocase subunit SECE; protein trans	83.64

>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}

Probab=83.64  E-value=1.8  Score=27.73  Aligned_cols=34  Identities=18%  Similarity=0.159  Sum_probs=21.5

Q ss_pred             ccCChhhHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q psy5              5 IFVPQDEFLDVIYWARQILGIILGIVWGFIPLRGFIGLALFALTN   49 (128)
Q Consensus         5 ~~~dKde~ldvI~w~Rqilali~Gi~aGiLgLtG~~Gf~~F~~~~   49 (128)
                      .=|||||+..+        +-+.|+...++   |+.||+.+++..
T Consensus        23 ~KPd~~Ef~~i--------ak~~~iG~~i~---G~iGf~Ikli~~   56 (61)
T 3mp7_B           23 KKPNWATYKRA--------AKITGLGIILI---GLIGMLIRIVGI   56 (61)
T ss_dssp             CCCCTTHHHHH--------HHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred             cCCCHHHHHHH--------HHHHHHHHHHH---HHHHHHHHHHHH
Confidence            34899998764        34555555554   566777776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00