Psyllid ID: psy6009


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860------
PPPPQPGTSSDKDISQSSSHRKEGTSCGPGCTCKFPVEKLAILDSKISSSRWVVPVLPEQELECLIKAAIELCKTNSDVDSEPCQRFFREGLSISFTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVFPLLDILTMVFNPCNKFHTFNSNQQSISVPVNSNIADDEIFARPIDYYKNQRGWLVDLINLFGSMGGFQILLERFQNKSTLTIPVIFALIRPFGQVHEYLTLPTILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQIKDICCLYEPGQNLNSHAPLSSRSHSSNNRQSIIDILIKNHSLIMLITNNLCSLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRQLTESGLKCFEKFFKSVNIGEGKLVLKVKKRSLLLDNADLIGAEYLWRVITNAGEDIAFRAIDLLKEVSTHLGPKLQSSLTQFHKTFIAECLDRLRAHYDTIGLSHTYRPILPEARQIWTALAQEAIFHCDREACFKWFSKLMTDEPDLDPKMMKDFFEKHVLHFEPIPHRETLSGLVAADFISGK
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccEEccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHccHHHHHHHccHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccHHHHHccccccccHHHHHHHHHHHHHHHccccccHHcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccEEEEcccccccccccHccccccccEccccccccccccHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHcccHHHHHHccccHccccccHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccEHHEEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHccHHHHHHHHHHHHHHccccccccccEEEEEccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHccHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccEEEEEEcccc
ppppqpgtssdkdisqssshrkegtscgpgctckfpveKLAILdskisssrwvvpvlpeqELECLIKAAIELCktnsdvdsepcqrfFREGLSISFTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVFPLLDILTmvfnpcnkfhtfnsnqqsisvpvnsniaddeifarpidyyknQRGWLVDLINLFGSMGGFQILLERFqnkstltiPVIFALIRpfgqvheyltLPTILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAarvphqedteIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAarvphqedtVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVayyphrhpeeewltpdrmakwikdnnVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAwdfspvqldHLFVCFQASWTSANRKQTEKLLELIRRLAeddkdgvmADKVLNLFWSLAHSDDVMTDIMEQALASHLKILdyscsqerdkQKTIWLQTCIEEfksnpkwvvpALRQIKDIcclyepgqnlnshaplssrshssnnrQSIIDILIKNHSLIMLITNNLCSLLQISSFNGKMNALNEVNKVIAGVayyphrhpeeewltpdrqlTESGLKCFEKFFKSVNIGEGKLVLKVKKRSLLLDNADLIGAEYLWRVITNAGEDIAFRAIDLLKEVSthlgpklqsSLTQFHKTFIAECLDRLRAHYdtiglshtyrpilPEARQIWTALAQEAIFHCDREACFKWFSKlmtdepdldpkmMKDFFEKHvlhfepiphretlsglvaadfisgk
ppppqpgtssdkdisqssshrkegtscgpgctCKFPVEKLAILDSKISSSRWVVPVLPEQELECLIKAAIELCKTNSDVDSEPCQRFFREGLSISFTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVFPLLDILTMVFNPCNKFHTFNSNQQSISVPVNSNIADDEIFARPIDYYKNQRGWLVDLINLFGSMGGFQILLERFQNKSTLTIPVIFALIRPFGQVHEYLTLPTILKYFMPILEIVPEILENLTDEELKKeakneskndaiSVIIKSCKLLAARvphqedteivpeilenltdeELKKeakneskndaiSVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVlrdslhqpqYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQaswtsanrkQTEKLLELIRRLaeddkdgvMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQIKDICCLYEPGQNLNSHAPLSSRSHSSNNRQSIIDILIKNHSLIMLITNNLCSLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRQLTESGLKCFEKFFksvnigegklvlKVKKRSLLLDNADLIGAEYLWRVITNAGEDIAFRAIDLLKEVSTHLGPKLQSSLTQFHKTFIAECLDRLRAHYDTIGLSHTYRPILPEARQIWTALAQEAIFHCDREACFKWFSKLMTDEPDLDPKMMKDFFEKHVLHFepiphretlsglvaadfisgk
PPPPQPGTssdkdisqsssHRKEGTSCGPGCTCKFPVEKLAILDSKISSSRWVVPVLPEQELECLIKAAIELCKTNSDVDSEPCQRFFREGLSISFTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVFPLLDILTMVFNPCNKFHTFNSNQQSISVPVNSNIADDEIFARPIDYYKNQRGWLVDLINLFGSMGGFQILLERFQNKSTLTIPVIFALIRPFGQVHEYLTLPTILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQIKDICCLYEPGQNLNSHAPLssrshssnnrqsIIDILIKNHSLIMLITNNLCSLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRQLTESGLKCFEKFFKSVNIGEGklvlkvkkrslllDNADLIGAEYLWRVITNAGEDIAFRAIDLLKEVSTHLGPKLQSSLTQFHKTFIAECLDRLRAHYDTIGLSHTYRPILPEARQIWTALAQEAIFHCDREACFKWFSKLMTDEPDLDPKMMKDFFEKHVLHFEPIPHRETLSGLVAADFISGK
*****************************GCTCKFPV**************WVVPVLPEQELECLIKAAIELCKTNSDVDSEPCQRFFREGLSISFTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVFPLLDILTMVFNPCNKFHTFNSNQQSISVPVNSNIADDEIFARPIDYYKNQRGWLVDLINLFGSMGGFQILLERFQNKSTLTIPVIFALIRPFGQVHEYLTLPTILKYFMPILEIVPEILENLT***************AISVIIKSCKLLAARVPHQEDTEIVPEIL*******************AISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQIKDICCLYEP*********************SIIDILIKNHSLIMLITNNLCSLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRQLTESGLKCFEKFFKSVNIGEGKLVLKVKKRSLLLDNADLIGAEYLWRVITNAGEDIAFRAIDLLKEVSTHLGPKLQSSLTQFHKTFIAECLDRLRAHYDTIGLSHTYRPILPEARQIWTALAQEAIFHCDREACFKWFSKLMTDEPDLDPKMMKDFFEKHVLHFEPIPHRETLSGLVAADF****
*********************************KFPVEKLAILDSKISSSRWVVPVLPEQELECLIKAAIELC*****VDSEPCQRFFREGLSISFTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVFPLLDILTMVFNPCNKFHTFNSNQQSISV*VNSNIADDEIFARPIDYYKNQRGWLVDLINLFGSMGGFQILLERFQNKSTLTIPVIFALIRPFGQVHEYLTLPTILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFN***NALNEVNKVIAGVA**************DRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQIKDICCLYEPGQN**SH****S**HSSNNRQSIIDILIKNHSLIMLITNNLCSLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRQLTESGLKCFEKFFKSVNIGEGKLVLKVKKRSLLLDNADLIGAEYLWRVITNAGEDIAFRAIDLLKEVSTHLGPKLQSSLTQFHKTFIAECLDRLRAHYDTIG******PILPEARQIWTALAQEAIFHCDREACFKWFSKLMTDEPDLDPKMMKDFFEKHVLHFEPIPHRETLSGLVAADFISGK
***************************GPGCTCKFPVEKLAILDSKISSSRWVVPVLPEQELECLIKAAIELCKTNSDVDSEPCQRFFREGLSISFTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVFPLLDILTMVFNPCNKFHTFNSNQQSISVPVNSNIADDEIFARPIDYYKNQRGWLVDLINLFGSMGGFQILLERFQNKSTLTIPVIFALIRPFGQVHEYLTLPTILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQIKDICCLYEPGQNLNS************NRQSIIDILIKNHSLIMLITNNLCSLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRQLTESGLKCFEKFFKSVNIGEGKLVLKVKKRSLLLDNADLIGAEYLWRVITNAGEDIAFRAIDLLKEVSTHLGPKLQSSLTQFHKTFIAECLDRLRAHYDTIGLSHTYRPILPEARQIWTALAQEAIFHCDREACFKWFSKLMTDEPDLDPKMMKDFFEKHVLHFEPIPHRETLSGLVAADFISGK
*******************************TCKFPVEKLAILDSKISSSRWVVPVLPEQELECLIKAAIELCKTNSDVDSEPCQRFFREGLSISFTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVFPLLDILTMVFNPCNKFHTFNSNQQSISVPVNSNIADDEIFARPIDYYKNQRGWLVDLINLFGSMGGFQILLERFQNKSTLTIPVIFALIRPFGQVHEYLTLPTILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQIKDICCLYEPGQNLNSHAPLSSRSHSSNNRQSIIDILIKNHSLIMLITNNLCSLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRQLTESGLKCFEKFFKSVNIGEGKLVLKVKKRSLLLDNADLIGAEYLWRVITNAGEDIAFRAIDLLKEVSTHLGPKLQSSLTQFHKTFIAECLDRLRAHYDTIGLSHTYRPILPEARQIWTALAQEAIFHCDREACFKWFSKLMTDEPDLDPKMMKDFFEKHVLHFEPIPHRETLSGLVAADFISG*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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PPPPQPGTSSDKDISQSSSHRKEGTSCGPGCTCKFPVEKLAILDSKISSSRWVVPVLPEQELECLIKAAIELCKTNSDVDSEPCQRFFREGLSISFTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVFPLLDILTMVFNPCNKFHTFNSNQQSISVPVNSNIADDEIFARPIDYYKNQRGWLVDLINLFGSMGGFQILLERFQNKSTLTIPVIFALIRPFGQVHEYLTLPTILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQIKDICCLYEPGQNLNSHAPLSSRSHSSNNRQSIIDILIKNHSLIMLITNNLCSLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRQLTESGLKCFEKFFKSVNIGEGKLVLKVKKRSLLLDNADLIGAEYLWRVITNAGEDIAFRAIDLLKEVSTHLGPKLQSSLTQFHKTFIAECLDRLRAHYDTIGLSHTYRPILPEARQIWTALAQEAIFHCDREACFKWFSKLMTDEPDLDPKMMKDFFEKHVLHFEPIPHRETLSGLVAADFISGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query866 2.2.26 [Sep-21-2011]
P70398 2559 Probable ubiquitin carbox yes N/A 0.728 0.246 0.553 0.0
Q93008 2570 Probable ubiquitin carbox yes N/A 0.678 0.228 0.574 0.0
O00507 2555 Probable ubiquitin carbox no N/A 0.639 0.216 0.582 0.0
P55824 2778 Probable ubiquitin carbox yes N/A 0.639 0.199 0.531 0.0
B1AY13 2617 Ubiquitin carboxyl-termin no N/A 0.826 0.273 0.258 1e-68
Q9UPU5 2620 Ubiquitin carboxyl-termin no N/A 0.829 0.274 0.261 1e-67
Q70CQ2 3546 Ubiquitin carboxyl-termin no N/A 0.162 0.039 0.271 3e-06
Q6ZQ93 3582 Ubiquitin carboxyl-termin no N/A 0.162 0.039 0.264 8e-06
>sp|P70398|USP9X_MOUSE Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Mus musculus GN=Usp9x PE=1 SV=2 Back     alignment and function desciption
 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/697 (55%), Positives = 474/697 (68%), Gaps = 66/697 (9%)

Query: 2   PPPQPGTSSDKDISQSSSHRKEGTSCGPGCTC--------KFPVEKLAILDSKISSSRWV 53
           PP Q   +S  D S  +S        G G            FP   LA LD  I+  RWV
Sbjct: 26  PPLQQNQTSSPDSSNENSPATPPDEQGQGDAPPQIEDEEPAFPHTDLAKLDDMINRPRWV 85

Query: 54  VPVLPEQELECLIKAAIELCKTNSDVDSEPCQRFFREGLSISFTKILTDDAVHSWKYNIH 113
           VPVLP+ ELE L++AAI+L K   DV SE CQRFFR+GL+ISFTKILTD+AV  WK+ IH
Sbjct: 86  VPVLPKGELEVLLEAAIDLSKKGLDVKSEACQRFFRDGLTISFTKILTDEAVSGWKFEIH 145

Query: 114 NCIYNNCQKLLELIVLKLGQDVFPLLDILTMVFNPCNKFHTFNSNQQSISVPVNSNIADD 173
            CI NN  +L+EL V KL QD FPLL++L M  NP  KFH +N  +   SV  +  + +D
Sbjct: 146 RCIINNTHRLVELCVAKLAQDWFPLLELLAMALNPHCKFHIYNGTRPCESVSSSVQLPED 205

Query: 174 EIFARPIDYYKNQRGWLVDLINLFGSMGGFQILLERFQNKSTLTIPVIFALIRPFGQVHE 233
           E+FAR  D  ++ +GWLVDL+N FG++ GFQIL +RF N S L + +I ALI+PFGQ +E
Sbjct: 206 ELFARSPDP-RSPKGWLVDLLNKFGTLNGFQILHDRFINGSALNVQIIAALIKPFGQCYE 264

Query: 234 YLTLPTILKYFMPILEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQ 293
           +LTL T+ KYF+PI+E                                            
Sbjct: 265 FLTLHTVKKYFLPIIE-------------------------------------------- 280

Query: 294 EDTEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTVKQLEIFRL 353
               +VP+ LENLTDEELKKEAKNE+KNDA+S+IIKS K LA+RVP QE+TVK LEIFRL
Sbjct: 281 ----MVPQFLENLTDEELKKEAKNEAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRL 336

Query: 354 KIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHP---EEEWLTPDRMAKWIKDNNVL 410
           K+ILRLLQISSFNGKMNALNEVNKVI+ V+YY HRH    +EEWLT +RMA+WI+ NN+L
Sbjct: 337 KMILRLLQISSFNGKMNALNEVNKVISSVSYYTHRHGSSEDEEWLTAERMAEWIQQNNIL 396

Query: 411 EIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKL 470
            IVLRDSLHQPQYVEKLEKILRF+IKEKAL+L DLD +WAAQAGKH+AIVKNVH+LLAKL
Sbjct: 397 SIVLRDSLHQPQYVEKLEKILRFVIKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKL 456

Query: 471 AWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAH 530
           AWDFSP QLDHLF CF+ASWT+A++KQ EKLLELIRRLAEDDKDGVMA KVLNL W+LAH
Sbjct: 457 AWDFSPEQLDHLFDCFKASWTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAH 516

Query: 531 SDDVMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQIKDI 590
           SDDV  DIM+ AL++H+KILDYSCSQ+RD QK  W+   IEE ++N KWV+PAL+QI++I
Sbjct: 517 SDDVPVDIMDLALSAHIKILDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREI 576

Query: 591 CCLY-EPGQNLNSHAPLSSRSHSSNNRQSIIDILIKNHSLIMLITNNLCSLLQISSFNGK 649
           C L+ E  QNL+     S RS     R  +I+ L  NH+L+ L+  NL + ++     G+
Sbjct: 577 CSLFGEAPQNLSQ----SQRSPHVFYRHDLINQLQHNHALVTLVAENLATYMESMRMYGR 632

Query: 650 MNALNEVNKVIAGVAYYPHRHPEEEWLTPDRQLTESG 686
            N   +   V  G + Y H    +E L   R L + G
Sbjct: 633 DNEDYDPQTVRLG-SRYSHVQEVQERLNFLRFLLKDG 668




Deubiquitinase involved both in the processing of ubiquitin precursors and of ubiquitinated proteins. May therefore play an important role regulatory role at the level of protein turnover by preventing degradation of proteins through the removal of conjugated ubiquitin. Essential component of TGF-beta/BMP signaling cascade. Regulates chromosome alignment and segregation in mitosis by regulating the localization of BIRC5/survivin to mitotic centromeres. Specifically hydrolyzes both 'Lys-29'- and 'Lys-33'-linked polyubiquitins chains. Specifically deubiquitinates monoubiquitinated SMAD4, opposing the activity of E3 ubiquitin-protein ligase TRIM33.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Homo sapiens GN=USP9X PE=1 SV=3 Back     alignment and function description
>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y OS=Homo sapiens GN=USP9Y PE=1 SV=2 Back     alignment and function description
>sp|P55824|FAF_DROME Probable ubiquitin carboxyl-terminal hydrolase FAF OS=Drosophila melanogaster GN=faf PE=1 SV=2 Back     alignment and function description
>sp|B1AY13|UBP24_MOUSE Ubiquitin carboxyl-terminal hydrolase 24 OS=Mus musculus GN=Usp24 PE=1 SV=1 Back     alignment and function description
>sp|Q9UPU5|UBP24_HUMAN Ubiquitin carboxyl-terminal hydrolase 24 OS=Homo sapiens GN=USP24 PE=1 SV=3 Back     alignment and function description
>sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34 PE=1 SV=2 Back     alignment and function description
>sp|Q6ZQ93|UBP34_MOUSE Ubiquitin carboxyl-terminal hydrolase 34 OS=Mus musculus GN=Usp34 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query866
350409594 2588 PREDICTED: probable ubiquitin carboxyl-t 0.800 0.267 0.565 0.0
340713827 2588 PREDICTED: probable ubiquitin carboxyl-t 0.800 0.267 0.564 0.0
328781722 2588 PREDICTED: probable ubiquitin carboxyl-t 0.804 0.269 0.562 0.0
380024961 2588 PREDICTED: LOW QUALITY PROTEIN: probable 0.804 0.269 0.561 0.0
242005600 2583 ubiquitin specific protease 9/faf, putat 0.801 0.268 0.531 0.0
307186143 2606 Probable ubiquitin carboxyl-terminal hyd 0.640 0.212 0.652 0.0
345479954 2606 PREDICTED: probable ubiquitin carboxyl-t 0.666 0.221 0.637 0.0
345479950 2568 PREDICTED: probable ubiquitin carboxyl-t 0.666 0.224 0.637 0.0
332030161 2590 Putative ubiquitin carboxyl-terminal hyd 0.642 0.214 0.646 0.0
383863681 2585 PREDICTED: probable ubiquitin carboxyl-t 0.662 0.222 0.621 0.0
>gi|350409594|ref|XP_003488787.1| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  874 bits (2259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/831 (56%), Positives = 569/831 (68%), Gaps = 138/831 (16%)

Query: 35  FPVEKLAILDSKISSSRWVVPVLPEQELECLIKAAIELCKTNSDVDSEPCQRFFREGLSI 94
           FPV KL +L  KISS RWVVPVLPEQELECL++A+I+LCK   DV SE CQRFFREGL+I
Sbjct: 70  FPVAKLNMLHEKISSPRWVVPVLPEQELECLLQASIDLCKKGIDVQSEACQRFFREGLTI 129

Query: 95  SFTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVFPLLDILTMVFNPCNKFHT 154
           SFTKILTDDAV SWK NI NCI  NC++L++L +LKL +D FPLLD+L MVFNP NKFHT
Sbjct: 130 SFTKILTDDAVSSWKMNIQNCINANCERLVDLCILKLDEDWFPLLDLLAMVFNPSNKFHT 189

Query: 155 FNSNQQSISVPVNSNIADDEIFARPIDYYKNQRGWLVDLINLFGSMGGFQILLERFQNKS 214
           FN+ + S +VP  S+I D++++ARP    ++ RGWLVDLIN FGS+ GF+ILL RFQ+  
Sbjct: 190 FNAARVSETVPPGSDIPDEQLYARPPPDSRSPRGWLVDLINRFGSLNGFEILLSRFQSGR 249

Query: 215 TLTIPVIFALIRPFGQVHEYLTLPTILKYFMPILEIVPEILENLTDEELKKEAKNESKND 274
            LT+PVI+ALIRPFG  +E LT+ TI+KY MPI+E                         
Sbjct: 250 NLTVPVIYALIRPFGLCYELLTVHTIVKYLMPIVE------------------------- 284

Query: 275 AISVIIKSCKLLAARVPHQEDTEIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLL 334
                                  +VP IL NLTDEELKKEAKNESKNDAIS IIK+ K L
Sbjct: 285 -----------------------MVPVILNNLTDEELKKEAKNESKNDAISAIIKAAKCL 321

Query: 335 AARVPHQEDTVKQLEIFRLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHP---E 391
            +RVPHQE+ +K L I RLK+ILRLLQISSFNGKMNALNEVNKVIA V++Y HR+    E
Sbjct: 322 VSRVPHQEEMIKNLGILRLKMILRLLQISSFNGKMNALNEVNKVIATVSFYQHRNAIVEE 381

Query: 392 EEWLTPDRMAKWIKDNNVLEIVLRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAA 451
           EEWLT + MAKWIK+N VLEIVLRDSLHQPQYVEKLEKILRF+IKE+AL+L DLDAVWAA
Sbjct: 382 EEWLTAECMAKWIKENGVLEIVLRDSLHQPQYVEKLEKILRFIIKERALTLEDLDAVWAA 441

Query: 452 QAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAED 511
           QAGKH+AIVKNVH+LLAKLAWDFSP QLDHLF CFQ SW +AN+KQ EKLLELIRRLAED
Sbjct: 442 QAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFECFQMSWKTANKKQGEKLLELIRRLAED 501

Query: 512 DKDGVMADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIE 571
           DKDGVMA KVL LFW+LAHSD+V T+IM+QAL +H+KILDYSCSQERD QKTIWL  C+E
Sbjct: 502 DKDGVMAHKVLTLFWNLAHSDEVPTEIMDQALNAHVKILDYSCSQERDAQKTIWLDKCVE 561

Query: 572 EFKSNPKWVVPALRQIKDICCLYEPGQNLNSHAPLSSRSHSSNNRQSIIDILIKNHSLIM 631
           E K++ KW +PAL+QI++ICCLYEP  N+  H     R+H  + RQ +I+ L   HS ++
Sbjct: 562 ELKNSDKWALPALKQIREICCLYEPNPNIACHG---QRNH--HYRQDVIERLQAEHSAVI 616

Query: 632 LITNNLCSLLQISSFNGKMNALNEVNKVIAGVAY-----YPHRHPEEE------------ 674
           L+TN+L      +++  KM  L + N  I G  Y     Y H    +E            
Sbjct: 617 LVTNSL------TNYMDKMRQLVKENPDIDGNTYMHDGRYNHIMQVQERLNFLRFLLKDG 670

Query: 675 --WLTPDRQ------LTESGL------KCFEKF--------------------------- 693
             WL  D+       L E G+       CF+ F                           
Sbjct: 671 QLWLCADQAEQIWQCLAEQGVFVSDREACFKWFSKLMGDEPDLDPAINKDFFQNNILQLD 730

Query: 694 ---------------FKSVNIGEGKLVLKVKKRSLLLDNADLIGAEYLWRVITNAGEDIA 738
                          FK+VN  EGK  LK+K+R+ L+D+ DLIG +YLWRV+TN+ E+IA
Sbjct: 731 PTLLTESGIKCYERFFKAVNSKEGK--LKLKRRTFLMDDVDLIGTDYLWRVVTNSPEEIA 788

Query: 739 FRAIDLLKEVSTHLGPKLQSSLTQFHKTFIAECLDRLRAHYDTIG-LSHTY 788
            RAI+LLKEV+T+LGP+LQSS+  FH T+I EC+DRL+AHYDT+  LS  Y
Sbjct: 789 NRAIELLKEVNTNLGPRLQSSVLAFHVTYIGECMDRLKAHYDTVSVLSKVY 839




Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713827|ref|XP_003395437.1| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like isoform 1 [Bombus terrestris] gi|340713829|ref|XP_003395438.1| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|328781722|ref|XP_395447.4| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X [Apis mellifera] Back     alignment and taxonomy information
>gi|380024961|ref|XP_003696253.1| PREDICTED: LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like [Apis florea] Back     alignment and taxonomy information
>gi|242005600|ref|XP_002423652.1| ubiquitin specific protease 9/faf, putative [Pediculus humanus corporis] gi|212506812|gb|EEB10914.1| ubiquitin specific protease 9/faf, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307186143|gb|EFN71868.1| Probable ubiquitin carboxyl-terminal hydrolase FAF-X [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345479954|ref|XP_001604458.2| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345479950|ref|XP_003424062.1| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like isoform 2 [Nasonia vitripennis] gi|345479952|ref|XP_003424063.1| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X-like isoform 3 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332030161|gb|EGI69955.1| Putative ubiquitin carboxyl-terminal hydrolase FAF-X [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383863681|ref|XP_003707308.1| PREDICTED: probable ubiquitin carboxyl-terminal hydrolase FAF-X [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query866
UNIPROTKB|E2RBU9 1677 USP9X "Uncharacterized protein 0.449 0.231 0.643 5e-236
ZFIN|ZDB-GENE-061019-1 2594 usp9 "ubiquitin specific pepti 0.444 0.148 0.647 6.5e-235
UNIPROTKB|E1BWJ5 2552 USP9X "Ubiquitin carboxyl-term 0.444 0.150 0.644 1.3e-233
UNIPROTKB|E1BWJ4 2553 USP9X "Ubiquitin carboxyl-term 0.444 0.150 0.644 1.3e-233
UNIPROTKB|E1C806 2556 USP9X "Ubiquitin carboxyl-term 0.444 0.150 0.644 1.3e-233
RGD|1560056 2558 Usp9x "ubiquitin specific pept 0.444 0.150 0.644 1.2e-232
MGI|MGI:894681 2559 Usp9x "ubiquitin specific pept 0.444 0.150 0.642 5.2e-232
UNIPROTKB|G5E630 2554 LOC790347 "Ubiquitin carboxyl- 0.444 0.150 0.642 8.5e-232
UNIPROTKB|Q93008 2570 USP9X "Probable ubiquitin carb 0.444 0.149 0.642 3e-231
UNIPROTKB|I3LMY9 2568 USP9Y "Ubiquitin carboxyl-term 0.444 0.149 0.631 4.1e-229
UNIPROTKB|E2RBU9 USP9X "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 1248 (444.4 bits), Expect = 5.0e-236, Sum P(3) = 5.0e-236
 Identities = 254/395 (64%), Positives = 306/395 (77%)

Query:   297 EIVPEILENLTDEELKKEAKNESKNDAISVIIKSCKLLAARVPHQEDTVKQLEIFRLKII 356
             E+VP+ LENLTDEELKKEAKNE+KNDA+S+IIKS K LA+RVP QE+TVK LEIFRLK+I
Sbjct:   280 EMVPQFLENLTDEELKKEAKNEAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMI 339

Query:   357 LRLLQISSFNGKMNALNEVNKVIAGVAYYPHRH--PEEE-WLTPDRMAKWIKDNNVLEIV 413
             LRLLQISSFNGKMNALNEVNKVI+ V+YY HRH  PEEE WLT +RMA+WI+ NN+L IV
Sbjct:   340 LRLLQISSFNGKMNALNEVNKVISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNNILSIV 399

Query:   414 LRDSLHQPQYVEKLEKILRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWD 473
             LRDSLHQPQYVEKLEKILRF+IKEKAL+L DLD +WAAQAGKH+AIVKNVH+LLAKLAWD
Sbjct:   400 LRDSLHQPQYVEKLEKILRFVIKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWD 459

Query:   474 FSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMADKVLNLFWSLAHSDD 533
             FSP QLDHLF CF+ASWT+A++KQ EKLLELIRRLAEDDKDGVMA KVLNL W+LAHSDD
Sbjct:   460 FSPEQLDHLFDCFKASWTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDD 519

Query:   534 VMTDIMEQALASHLKILDYSCSQERDKQKTIWLQTCIEEFKSNPKWVVPALRQIKDICCL 593
             V  DIM+ AL++H+KILDYSCSQ+RD QK  W+   IEE ++N KWV+PAL+QI++IC L
Sbjct:   520 VPVDIMDLALSAHIKILDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSL 579

Query:   594 Y-EPGQNLNSHA-PLXXXXXXXXXXXXIIDILIKNHSLIMLITNNLCSLLQISSFNGKMN 651
             + E  QNL+S                 +I+ L  NH+L+ L+  NL + ++      + +
Sbjct:   580 FGEAPQNLSSSRFSQTQRSPHVFYRHDLINQLQHNHALVTLVAENLATYMESMRLYARDH 639

Query:   652 ALNEVNKVIAGVAYYPHRHPEEEWLTPDRQLTESG 686
                +   V  G + Y H    +E L   R L + G
Sbjct:   640 EDYDPQTVRLG-SRYSHVQEVQERLNFLRFLLKDG 673


GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
ZFIN|ZDB-GENE-061019-1 usp9 "ubiquitin specific peptidase 9" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWJ5 USP9X "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWJ4 USP9X "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C806 USP9X "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1560056 Usp9x "ubiquitin specific peptidase 9, X-linked" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:894681 Usp9x "ubiquitin specific peptidase 9, X chromosome" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G5E630 LOC790347 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q93008 USP9X "Probable ubiquitin carboxyl-terminal hydrolase FAF-X" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LMY9 USP9Y "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P55824FAF_DROME3, ., 4, ., 1, 9, ., 1, 20.53150.63970.1994yesN/A
P70398USP9X_MOUSE3, ., 4, ., 1, 9, ., 1, 20.55380.72860.2465yesN/A
Q93008USP9X_HUMAN3, ., 4, ., 1, 9, ., 1, 20.57420.67890.2287yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 866
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 80.01
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
Probab=80.01  E-value=86  Score=36.91  Aligned_cols=104  Identities=10%  Similarity=0.120  Sum_probs=75.9

Q ss_pred             hhhHHHHHHH-hccCchHHHHHHHHHHHHHhcccCh-hhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHHhccCCchhH
Q psy6009         442 LGDLDAVWAA-QAGKHDAIVKNVHELLAKLAWDFSP-VQLDHLFVCFQASWTSANRKQTEKLLELIRRLAEDDKDGVMAD  519 (866)
Q Consensus       442 ~~~ld~IW~a-~~~Khe~i~~~I~~lL~~la~~l~~-eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~~~~~~~~~~  519 (866)
                      ..-+..+++. ..-+++.+..++.-++++.+..... +....++..+...+...++..+..++..+-++........+..
T Consensus       413 ~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~  492 (526)
T PF01602_consen  413 EKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQN  492 (526)
T ss_dssp             HHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHH
Confidence            3345555553 3357888888899999988887765 3555566666666666667788888998888887776656666


Q ss_pred             HHHHHHHhhhcCCCCChHHHHHHHHH
Q psy6009         520 KVLNLFWSLAHSDDVMTDIMEQALAS  545 (866)
Q Consensus       520 k~L~LlW~L~~~~~~~~el~~~Al~~  545 (866)
                      .+++.+-.+....+..+|++|.|...
T Consensus       493 ~i~~~~~~~~~~~s~~~evr~Ra~~y  518 (526)
T PF01602_consen  493 EILQFLLSLATEDSSDPEVRDRAREY  518 (526)
T ss_dssp             HHHHHHHCHHHHS-SSHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            88888888888888889999988754



This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query866
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 74.1 bits (181), Expect = 1e-13
 Identities = 90/617 (14%), Positives = 189/617 (30%), Gaps = 166/617 (26%)

Query: 78  DVDSEPCQRFFREGLSIS-FTKILTDDAVHSWKYNIHNCIYNNCQKLLELIVLKLGQDVF 136
           + D +  Q   +  LS      I+      S    +   + +  +++++  V ++ +  +
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 137 PLL-----------DILTMVFNPC-NKFHTFNSNQQSISVPVNSNIADDEIFARPIDYYK 184
             L            ++T ++    ++   +N NQ      V+          R    Y 
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVS----------RL-QPYL 138

Query: 185 NQRGWLVDL-----INLFGSMGGFQILLERFQNKSTLTIPVIFA---LIRPFGQVHEYLT 236
             R  L++L     + + G + G          K+ + + V  +     +   ++  +L 
Sbjct: 139 KLRQALLELRPAKNVLIDG-VLGS--------GKTWVALDVCLSYKVQCKMDFKIF-WLN 188

Query: 237 -------------LPTILKYFMPILEIVPEILENLTD--EELKKEAKN--ESKNDAISVI 279
                        L  +L    P      +   N+      ++ E +   +SK     ++
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 280 I--------------KSCKLL--------AARVPHQEDTEI-VPEILENLTDEELKKE-A 315
           +               SCK+L           +     T I +      LT +E+K    
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 316 K--NESKND----AISVIIKSCKLLAARV---PHQEDTVKQLEIFRLKIILRLLQISSFN 366
           K  +    D     ++   +   ++A  +       D  K +   +L  I     I S  
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-----IESS- 362

Query: 367 GKMNALNEVNKVIAGVAYYPHRH--------PEEEWLTPDRMAK-W--IKDNNVLEIVLR 415
             +N L              +R         P    +    ++  W  +  ++V+ +V  
Sbjct: 363 --LNVLEPAE----------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-- 408

Query: 416 DSLHQPQYVEKLEK-----I--LRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLA 468
           + LH+   VEK  K     I  +   +K K  +   L          H +IV + +    
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----------HRSIVDHYNIPKT 458

Query: 469 KLAWDFSPVQLD---------HLFVCFQASWTSANRKQTEKLLE---LIRRLAEDDKDGV 516
             + D  P  LD         HL         +  R      L+   L +++  D     
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM---VFLDFRFLEQKIRHDSTAWN 515

Query: 517 MADKVLNLFWSLAHSDDVMTD---IMEQALASHLKILDYSCSQE--RDKQKTIWLQTCIE 571
            +  +LN    L      + D     E+ + + L  L     +     K   + L+  + 
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL-PKIEENLICSKYTDL-LRIAL- 572

Query: 572 EFKSNPKWVVPALRQIK 588
               +      A +Q++
Sbjct: 573 -MAEDEAIFEEAHKQVQ 588


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query866
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 93.87
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 88.71
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 87.08
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 86.53
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 81.04
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 80.54
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 80.2
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 80.18
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
Probab=93.87  E-value=11  Score=42.80  Aligned_cols=151  Identities=12%  Similarity=0.127  Sum_probs=83.4

Q ss_pred             HHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhcC--CCChHHHHHHHHHH
Q psy6009         353 LKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLRD--SLHQPQYVEKLEKI  430 (866)
Q Consensus       353 L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg~--nlHq~E~i~rs~~I  430 (866)
                      +..+.++++++....+..++..|..++..               .+.....+.+.+++..+..=  +-+ +++.+.+.-.
T Consensus       276 i~~Lv~lL~~~~~~v~~~al~aL~nl~~~---------------~~~~~~~i~~~g~l~~L~~LL~~~~-~~v~~~A~~a  339 (510)
T 3ul1_B          276 VPQLVKLLGATELPIVTPALRAIGNIVTG---------------TDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWT  339 (510)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHTTS---------------CHHHHHHHHHTTGGGGCC-CTTCSS-HHHHHHHHHH
T ss_pred             chhhhhhhcCCChhhhhHHHHHHHHhhcC---------------CHHHHHHHhhccchHHHHHHhcCCC-HHHHHHHHHH
Confidence            45667888999888888888888666543               13455667777877765432  223 5666666665


Q ss_pred             HHHHHhccCCChhhHHHHHHHhccCchHHHHHHHHHHHHHhcccChhhHHHHHHHHHhcccccCHHhhHHHHHHHHHHHH
Q psy6009         431 LRFLIKEKALSLGDLDAVWAAQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFVCFQASWTSANRKQTEKLLELIRRLAE  510 (866)
Q Consensus       431 l~FL~~~~~lt~~~ld~IW~a~~~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf~~~~~~~~~~s~~~r~~ll~lI~~la~  510 (866)
                      +.-|+..   +.++...+.+.                         .-+..|...++.    .+...+....-.|.+++.
T Consensus       340 L~nl~a~---~~~~~~~v~~~-------------------------g~i~~Lv~lL~~----~~~~v~~~Aa~aL~Nl~~  387 (510)
T 3ul1_B          340 MSNITAG---RQDQIQQVVNH-------------------------GLVPFLVGVLSK----ADFKTQKEAAWAITNYTS  387 (510)
T ss_dssp             HHHHTTS---CHHHHHHHHHT-------------------------THHHHHHHHHHS----SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcC---cHHHHHHHHhc-------------------------CCHHHHHHHHcC----CCHHHHHHHHHHHHHHHc
Confidence            5555322   22233222221                         111222222221    233445555555666654


Q ss_pred             hccC---Cch-hHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhhcc
Q psy6009         511 DDKD---GVM-ADKVLNLFWSLAHSDDVMTDIMEQALASHLKILDYS  553 (866)
Q Consensus       511 ~~~~---~~~-~~k~L~LlW~L~~~~~~~~el~~~Al~~~~~iL~~~  553 (866)
                      ....   ..+ ...++..|-+|+..+  .++++..++..+..||+.+
T Consensus       388 ~~~~~~~~~L~~~g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~  432 (510)
T 3ul1_B          388 GGTVEQIVYLVHCGIIEPLMNLLSAK--DTKIIQVILDAISNIFQAA  432 (510)
T ss_dssp             HCCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHh
Confidence            3221   111 123456666777655  4678889999998888753



>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query866
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 93.72
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 91.25
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 81.59
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.72  E-value=4.1  Score=41.15  Aligned_cols=114  Identities=11%  Similarity=0.085  Sum_probs=76.5

Q ss_pred             HHHHHHHHhccccchhhhhHHHHHHHHhhhhcccCCCCCCccCCcHHHHHHHHHhchhHHHHhc--CCCChHHHHHHHHH
Q psy6009         352 RLKIILRLLQISSFNGKMNALNEVNKVIAGVAYYPHRHPEEEWLTPDRMAKWIKDNNVLEIVLR--DSLHQPQYVEKLEK  429 (866)
Q Consensus       352 ~L~~~lrllkss~l~~R~~gL~ei~~~i~~~~~~~~~~~~~~~~~~~~l~~WL~en~Ile~llg--~nlHq~E~i~rs~~  429 (866)
                      -+..+.++++++..+.+..++.-+..++..               .+.....+.+.++++.+..  .+.. +++...+..
T Consensus       231 ~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~---------------~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~a~~  294 (434)
T d1q1sc_         231 VVPQLVKLLGATELPIVTPALRAIGNIVTG---------------TDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATW  294 (434)
T ss_dssp             CHHHHHHHHTCSCHHHHHHHHHHHHHHTTS---------------CHHHHHHHHHTTGGGGHHHHTTCSS-HHHHHHHHH
T ss_pred             cchhcccccccchhhhhhchhhhhhhHHhh---------------hhHHHHHHHhccccchHHHhhcccc-hhhhHHHHH
Confidence            345677788888888888888877655532               2345667777777766432  1333 777777777


Q ss_pred             HHHHHHhccCCChhhHHHHHH---------HhccCchHHHHHHHHHHHHHhcccChhhHHHHHH
Q psy6009         430 ILRFLIKEKALSLGDLDAVWA---------AQAGKHDAIVKNVHELLAKLAWDFSPVQLDHLFV  484 (866)
Q Consensus       430 Il~FL~~~~~lt~~~ld~IW~---------a~~~Khe~i~~~I~~lL~~la~~l~~eqL~~Lf~  484 (866)
                      ++.-|+..   +.+....+.+         .....+..++.+....+..++..-+.+++.++.+
T Consensus       295 ~L~~l~~~---~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~  355 (434)
T d1q1sc_         295 TMSNITAG---RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH  355 (434)
T ss_dssp             HHHHHTTS---CHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHhhhccc---cchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            77777532   2333333333         3446678888888889999998888888777643



>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure