Psyllid ID: psy6028

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQKRAQIPAKKSNKKKADN
Secondary Structure (PSIPRED)
cccccEEEEEEEcccEEEEEEccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccccccEEEEEEEccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEccccEEEEEcccccEEccccccccccccccccccEcccEEEEEEcccccEEEEEEEcccccccccccEEEEEccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
MVSSHLIWNIVKNNNAYLMKADNIKKWfskepgnlpnlasfkysglihsktihiqptadnkgfacvtkratkkykpgkavikqewksgprrsLLKLRKYIVGNKYRKELTKAALRRASAVLQSqkraqipakksnkkkadn
Flexible Loop (DISEMBL)
MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTihiqptadnkgFACVTKratkkykpgkavikqewksgprrsllklrkYIVGNKYRKELTKAALRRASavlqsqkraqipakksnkkkadn
Low Complexity Region (SEG)
MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQKRAQIPAKKSNKKKADN
Disordered region (IsUnstruct)
****HLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKA*****************************
Disordered Region (DISOPRED)
**SSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPG***************LLKLRKYIVGNKYRKELTKAALRRASAV*********************
Disordered Region (DISEMBL)
MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALR**************************
Disordered Region (DISPRO)
***SHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQ*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQKRAQIPAKKSNKKKADN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q9VZS5	144	60S ribosomal protein L28	yes	N/A	0.943	0.923	0.518	3e-35
Q962T2	139	60S ribosomal protein L28	N/A	N/A	0.879	0.892	0.5	6e-30
P46779	137	60S ribosomal protein L28	yes	N/A	0.971	1.0	0.395	8e-23
Q3T0L7	137	60S ribosomal protein L28	yes	N/A	0.971	1.0	0.402	1e-22
P41105	137	60S ribosomal protein L28	yes	N/A	0.971	1.0	0.395	1e-22
P17702	137	60S ribosomal protein L28	yes	N/A	0.971	1.0	0.381	2e-20
O82204	143	60S ribosomal protein L28	yes	N/A	0.936	0.923	0.391	7e-16
Q9M0E2	143	60S ribosomal protein L28	no	N/A	0.964	0.951	0.374	2e-14
Q21930	126	60S ribosomal protein L28	yes	N/A	0.851	0.952	0.364	5e-10
O14069	134	Probable 60S ribosomal pr	yes	N/A	0.872	0.917	0.314	3e-08

>sp|Q9VZS5|RL28_DROME 60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=2 SV=1

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 100/133 (75%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
            SSHL W I++NNNA+L+K  ++KK FS EP NL +++S++YSG++H KT+ + P AD K
Sbjct: 3   TSSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKK 62

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           GF  V K+     +P K  ++ ++K+GPRRSL KL+  ++G+KYRK+LT+AALRRASAVL
Sbjct: 63  GFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVL 122

Query: 122 QSQKRAQIPAKKS 134
           +SQK A +  KK+
Sbjct: 123 RSQKPAPVKGKKA 135

Drosophila melanogaster (taxid: 7227)

>sp|Q962T2|RL28_SPOFR 60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1

 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 89/124 (71%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
           +SSHL W I++NNNA+L+K  NIKK FSKEP N+ NL S++Y+GLI  K + +    D K
Sbjct: 1   MSSHLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRK 60

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           GF  V K+A    KP K  +++++K+G RRSL K+++ +  N YR +L+KA LRRASA+L
Sbjct: 61  GFTVVYKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAIL 120

Query: 122 QSQK 125
           +SQ+
Sbjct: 121 RSQR 124

Spodoptera frugiperda (taxid: 7108)

>sp|P46779|RL28_HUMAN 60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 86/139 (61%), Gaps = 2/139 (1%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
           +S+HL W +V+N +++L+K +  K+ +S EP NL    SF+Y+GLIH KT+ ++P AD K
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           G   V KR + + KP  + ++       R +L  +R  I  NKYR +L  AA+RRASA+L
Sbjct: 59  GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query: 122 QSQKRAQIPAKKSNKKKAD 140
           +SQK   +  K++   K+ 
Sbjct: 119 RSQKPVMVKRKRTRPTKSS 137

Homo sapiens (taxid: 9606)

>sp|Q3T0L7|RL28_BOVIN 60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/139 (40%), Positives = 85/139 (61%), Gaps = 2/139 (1%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
           +S+HL W +V+N +++L+K +  K+ +S EP NL    SF+Y+GLIH KT+ ++P AD K
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           G   V KR + + KP  + ++       R +L  +R  I  NKYR +L  AA+RRASA+L
Sbjct: 59  GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query: 122 QSQKRAQIPAKKSNKKKAD 140
           +SQK   +  K S   K+ 
Sbjct: 119 RSQKPVMVKRKPSRPTKSS 137

Bos taurus (taxid: 9913)

>sp|P41105|RL28_MOUSE 60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 86/139 (61%), Gaps = 2/139 (1%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
           +S+HL W +V+N +++L+K +  K+ +S EP NL    SF+Y+GLIH KT+ ++P AD K
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           G   V KR + + KP  + ++       R +L  +R  I  NKYR +L  AA+RRASA+L
Sbjct: 59  GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query: 122 QSQKRAQIPAKKSNKKKAD 140
           +SQK   +  K++   K+ 
Sbjct: 119 RSQKPVVVKRKRTRPTKSS 137

Mus musculus (taxid: 10090)

>sp|P17702|RL28_RAT 60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 84/139 (60%), Gaps = 2/139 (1%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
           +S+HL W +V+N +++L+K +  K+ +S EP NL    SF+Y+GLIH KT+ ++   D K
Sbjct: 1   MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGK 58

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           G   V KR + + KP  + ++       R +L  +R  I  NKYR +L  AA+RRASA+L
Sbjct: 59  GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query: 122 QSQKRAQIPAKKSNKKKAD 140
           +SQK   +  K++   K+ 
Sbjct: 119 RSQKPVVVKRKRTRPTKSS 137

Rattus norvegicus (taxid: 10116)

>sp|O82204|RL281_ARATH 60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 11/143 (7%)

Query: 2   VSSHLIWNIVKNNNAYLMKA---DNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA 58
           V   LIW IVKNNN +L+K     N K  FSKE  NL N+ S+K+SGL + KT+ IQ   
Sbjct: 4   VPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAAD 63

Query: 59  DNKGFACVTKRATKKYKP----GKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAAL 114
            ++     T +  K+ KP     K+++K+E+   PR S   +   +V N YR +L KAAL
Sbjct: 64  KDQAVVLATTKTKKQNKPKLSVNKSILKKEF---PRMSKA-VANQVVDNYYRPDLKKAAL 119

Query: 115 RRASAVLQSQKRAQIPAKKSNKK 137
            R SA+ +  + A+  AK+ N++
Sbjct: 120 ARLSAISKGLRVAKSGAKQRNRQ 142

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0E2|RL282_ARATH 60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 3/139 (2%)

Query: 2   VSSHLIWNIVKNNNAYLMKA---DNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA 58
           V   LIW IVK NN +L+K     N K  FSKE  NL N+ S+K+SGL + KT+ IQ   
Sbjct: 4   VPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAG 63

Query: 59  DNKGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRAS 118
            ++G    T +  ++ KP  +V K   K    R    +   +V N YR +L KAAL R S
Sbjct: 64  KDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLS 123

Query: 119 AVLQSQKRAQIPAKKSNKK 137
           A+ +  + A+   K+ N++
Sbjct: 124 AISKGLRVAKSGPKRRNRQ 142

Arabidopsis thaliana (taxid: 3702)

>sp|Q21930|RL28_CAEEL 60S ribosomal protein L28 OS=Caenorhabditis elegans GN=rpl-28 PE=1 SV=3

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 9/129 (6%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
           +S  L+W +++NN+A+L     I K FS E  NL  + S KYSGL +   I +   A  K
Sbjct: 1   MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDVSAAA--K 58

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           G    TK   +K +P KAV        P  S+ +L K    NK+     K A RRA+A++
Sbjct: 59  GVVVSTK--NEKGRPAKAVTTSTLSKTPVASVRRLAKNAGFNKF----NKLAQRRAAAIV 112

Query: 122 QSQ-KRAQI 129
           +SQ K+A++
Sbjct: 113 RSQVKKAKV 121

Caenorhabditis elegans (taxid: 6239)

>sp|O14069|RL28E_SCHPO Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl28e PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 4/127 (3%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKK-WFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN 60
           VS+ LIW ++++NN +L+K        F++EP N+    + ++SGL + K + +Q  +  
Sbjct: 3   VSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSP- 61

Query: 61  KGFACVTKRATKK-YKPGKAVIKQEWKSGPRRSLLKLRKYIVG-NKYRKELTKAALRRAS 118
           +G   +TK   K   KP K   K    +   R   K     +G   YR +L K ++ RAS
Sbjct: 62  RGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARAS 121

Query: 119 AVLQSQK 125
           A+L SQ+
Sbjct: 122 AILSSQR 128

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
110671516	141	putative ribosomal protein L28 [Diaphori	1.0	1.0	1.0	4e-75
121543829	139	ribosomal protein L28-like protein [Maco	0.985	1.0	0.553	9e-37
240849585	141	ribosomal protein L28 [Acyrthosiphon pis	0.971	0.971	0.547	3e-35
195402986	144	GJ15527 [Drosophila virilis] gi|19414187	0.936	0.916	0.553	6e-35
194748789	144	GF24379 [Drosophila ananassae] gi|190624	0.943	0.923	0.541	1e-34
70909833	137	ribosomal protein L28e [Meladema coriace	0.971	1.0	0.561	2e-34
70909829	137	ribosomal protein L28e [Carabus granulat	0.971	1.0	0.568	2e-34
340728565	138	PREDICTED: 60S ribosomal protein L28-lik	0.971	0.992	0.571	5e-34
195125314	144	GI12761 [Drosophila mojavensis] gi|19391	0.936	0.916	0.537	7e-34
195587425	144	GD13338 [Drosophila simulans] gi|1941954	0.943	0.923	0.518	8e-34

>gi|110671516|gb|ABG82009.1| putative ribosomal protein L28 [Diaphorina citri]

 Score =  285 bits (729), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN 60
           MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN
Sbjct: 1   MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN 60

Query: 61  KGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAV 120
           KGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAV
Sbjct: 61  KGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAV 120

Query: 121 LQSQKRAQIPAKKSNKKKADN 141
           LQSQKRAQIPAKKSNKKKADN
Sbjct: 121 LQSQKRAQIPAKKSNKKKADN 141

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543829|gb|ABM55579.1| ribosomal protein L28-like protein [Maconellicoccus hirsutus]

 Score =  158 bits (399), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 103/139 (74%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
           +S+ L W I +NNNAYL+K  +IKK FS EPGNL N+ASF+Y+GL+  KT+ ++   D K
Sbjct: 1   MSADLYWMITRNNNAYLLKKRDIKKPFSTEPGNLKNVASFRYNGLVQPKTVDVRAAKDGK 60

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           GF   TKRA ++ KPGK+ I     +GPRRSL KLR+Y+ G KYRK+LT+ ALR+ASA+L
Sbjct: 61  GFVVTTKRAKQQNKPGKSNISVTMSAGPRRSLYKLRRYLDGGKYRKDLTQVALRKASAIL 120

Query: 122 QSQKRAQIPAKKSNKKKAD 140
           +SQKR+ I AKK   KK++
Sbjct: 121 ESQKRSAIIAKKGRAKKSE 139

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240849585|ref|NP_001155658.1| ribosomal protein L28 [Acyrthosiphon pisum] gi|239790506|dbj|BAH71810.1| ACYPI006342 [Acyrthosiphon pisum]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/137 (54%), Positives = 102/137 (74%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
           +S+ L W I++N+NA+L K  NIKK FSKEP NL NLAS +Y+GL+H  +I ++   +NK
Sbjct: 1   MSADLSWMIIRNSNAFLSKKTNIKKPFSKEPMNLTNLASKRYNGLVHDNSIGVESAPNNK 60

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           GF  +TK+     KPGK+++K  + SGPRRSL KLRKY++GN YRK+L +A+LRRASA+L
Sbjct: 61  GFTVITKKRKLANKPGKSLVKVNFTSGPRRSLFKLRKYLLGNSYRKDLIQASLRRASAIL 120

Query: 122 QSQKRAQIPAKKSNKKK 138
           +SQKRA +  KK  K K
Sbjct: 121 ESQKRATLALKKLGKSK 137

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195402986|ref|XP_002060078.1| GJ15527 [Drosophila virilis] gi|194141876|gb|EDW58289.1| GJ15527 [Drosophila virilis]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 97/132 (73%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
            SSHL W I++NNNA+L+K  ++KK FS EP NL N++SF+YSG++H KT+ + P AD K
Sbjct: 3   TSSHLNWLIIRNNNAFLLKKRDVKKPFSTEPSNLANVSSFRYSGIVHKKTLGVVPAADKK 62

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           GF  V K+     +P K  ++  +KSGPRRSL KL+  + G KYRK+LT+AALRRASAVL
Sbjct: 63  GFTAVLKKGKYGQRPAKNTVRVNFKSGPRRSLKKLKNLLTGTKYRKDLTQAALRRASAVL 122

Query: 122 QSQKRAQIPAKK 133
           +SQK  Q+ AKK
Sbjct: 123 RSQKPVQVKAKK 134

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194748789|ref|XP_001956827.1| GF24379 [Drosophila ananassae] gi|190624109|gb|EDV39633.1| GF24379 [Drosophila ananassae]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/133 (54%), Positives = 101/133 (75%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
            SSHL W I++NNNA+L+K  ++KK FS EP NL +++S++YSG++H KT+ + PTAD K
Sbjct: 3   TSSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPTADKK 62

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           GF  V K+     +P K  ++ E+K+GPRRSL KL+  ++G+KYRK+LT+AALRRASAVL
Sbjct: 63  GFTAVLKKGKYAQRPAKNTVRVEFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVL 122

Query: 122 QSQKRAQIPAKKS 134
           +SQK A I  KK+
Sbjct: 123 RSQKPAPIKGKKA 135

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909833|emb|CAJ17403.1| ribosomal protein L28e [Meladema coriacea]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 99/139 (71%), Gaps = 2/139 (1%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
           +S+HL W I++NNNA+L+K  NI K FS EP NLPNL+SF+Y+GLIH KT+ I    D K
Sbjct: 1   MSAHLSWMIIRNNNAFLLKKRNINKPFSTEPSNLPNLSSFRYNGLIHKKTVGIIEPKDKK 60

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           GF  V K+A K+ KP KA + +  K GPRRSL KLR+ +  N YRK+LTK ALRRASAV 
Sbjct: 61  GFTVVYKKANKQNKPRKATVTRTMKXGPRRSLYKLRRLLDKNSYRKDLTKVALRRASAVX 120

Query: 122 QSQKRAQIPAKKSNKKKAD 140
           +SQ+   +P KK   KKA+
Sbjct: 121 RSQR--PLPGKKQRAKKAE 137

Source: Meladema coriacea

Species: Meladema coriacea

Genus: Meladema

Family: Dytiscidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909829|emb|CAJ17401.1| ribosomal protein L28e [Carabus granulatus]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 99/139 (71%), Gaps = 2/139 (1%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
           +S+HL W I++NNNA+L+K  NI K FS EP NL NL SF+Y+GLIH KT+ I    D K
Sbjct: 1   MSAHLSWMIIRNNNAFLLKKRNISKPFSTEPSNLTNLNSFRYNGLIHKKTVGIVEPKDKK 60

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           GF  V K+A K+ KP +A I +  KSGPRRSL KLR+ +  N YRK+LTK ALRRASA+L
Sbjct: 61  GFTVVYKKANKQNKPRRATITRTMKSGPRRSLHKLRRLMDKNSYRKDLTKVALRRASAIL 120

Query: 122 QSQKRAQIPAKKSNKKKAD 140
           +SQK   +P KK   KKA+
Sbjct: 121 RSQK--PLPVKKQRTKKAE 137

Source: Carabus granulatus

Species: Carabus granulatus

Genus: Carabus

Family: Carabidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728565|ref|XP_003402591.1| PREDICTED: 60S ribosomal protein L28-like isoform 1 [Bombus terrestris] gi|340728567|ref|XP_003402592.1| PREDICTED: 60S ribosomal protein L28-like isoform 2 [Bombus terrestris] gi|340728569|ref|XP_003402593.1| PREDICTED: 60S ribosomal protein L28-like isoform 3 [Bombus terrestris] gi|350408755|ref|XP_003488502.1| PREDICTED: 60S ribosomal protein L28-like [Bombus impatiens]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 80/140 (57%), Positives = 102/140 (72%), Gaps = 3/140 (2%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
           +SSHL W I++NNNA+L+K  NI K FS EP NL NL+S++YSGLIH K++ +  TAD K
Sbjct: 1   MSSHLNWMIIRNNNAFLLKKRNINKPFSTEPNNLNNLSSYRYSGLIHRKSVGVVDTADKK 60

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           GF  V K+A    KP KA ++   K+G RRSL KL++ +  NKYR +LTKAALRRASAVL
Sbjct: 61  GFTVVYKKAKAMNKPAKATVRCTMKAGARRSLYKLKRLLTKNKYRVDLTKAALRRASAVL 120

Query: 122 QSQKRAQIPAKKS-NKKKAD 140
           +SQK   +PAKK+   KKAD
Sbjct: 121 RSQK--PLPAKKTRTTKKAD 138

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195125314|ref|XP_002007124.1| GI12761 [Drosophila mojavensis] gi|193918733|gb|EDW17600.1| GI12761 [Drosophila mojavensis]

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 97/132 (73%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
            SSHL W I++NNNA+L+K  ++KK FS EP NL N++S++YSG++H KT+ + P AD K
Sbjct: 3   TSSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLANVSSYRYSGIVHKKTVGVVPAADKK 62

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           GF  V K+     +P K  ++  +K+GPRRSL KL+  + G+KYRK+LT+AALRRASAVL
Sbjct: 63  GFTTVLKKGKYAQRPAKNTVRVSFKAGPRRSLKKLKNLLTGSKYRKDLTQAALRRASAVL 122

Query: 122 QSQKRAQIPAKK 133
           +SQK  Q  AKK
Sbjct: 123 RSQKPVQTKAKK 134

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195587425|ref|XP_002083465.1| GD13338 [Drosophila simulans] gi|194195474|gb|EDX09050.1| GD13338 [Drosophila simulans]

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 69/133 (51%), Positives = 101/133 (75%)

Query: 2   VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
            SSHL W I++NNNA+L+K  ++KK FS EP NL +++S++YSG++H KT+ + P AD K
Sbjct: 3   TSSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKK 62

Query: 62  GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
           GF  V K+    ++P K  ++ ++K+GPRRSL KL+  ++G+KYRK+LT+AALRRASAVL
Sbjct: 63  GFTAVLKKGKYAHRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVL 122

Query: 122 QSQKRAQIPAKKS 134
           +SQK A +  KK+
Sbjct: 123 RSQKPAPVKGKKA 135

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
FB|FBgn0035422	144	RpL28 "Ribosomal protein L28"	0.964	0.944	0.514	4e-35
UNIPROTKB|Q3T0L7	137	RPL28 "60S ribosomal protein L	0.964	0.992	0.405	1.8e-23
UNIPROTKB|E2R0A6	137	RPL28 "Uncharacterized protein	0.964	0.992	0.398	1.8e-23
UNIPROTKB|P46779	137	RPL28 "60S ribosomal protein L	0.964	0.992	0.398	1.8e-23
MGI|MGI:101839	137	Rpl28 "ribosomal protein L28"	0.964	0.992	0.398	2.9e-23
RGD|2318912	137	LOC100362069 "ribosomal protei	0.964	0.992	0.398	2.9e-23
UNIPROTKB|Q642E2	137	Rpl28 "Ribosomal protein L28"	0.964	0.992	0.398	2.9e-23
ZFIN|ZDB-GENE-040930-10	138	rpl28 "ribosomal protein L28"	0.971	0.992	0.402	1.3e-22
RGD|1565183	137	RGD1565183 "similar to ribosom	0.964	0.992	0.384	9e-22
RGD|621193	137	Rpl28 "ribosomal protein L28"	0.964	0.992	0.384	1.1e-21

FB|FBgn0035422 RpL28 "Ribosomal protein L28" [Drosophila melanogaster (taxid:7227)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 70/136 (51%), Positives = 101/136 (74%)

Query:     3 SSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKG 62
             SSHL W I++NNNA+L+K  ++KK FS EP NL +++S++YSG++H KT+ + P AD KG
Sbjct:     4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63

Query:    63 FACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQ 122
             F  V K+     +P K  ++ ++K+GPRRSL KL+  ++G+KYRK+LT+AALRRASAVL+
Sbjct:    64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLR 123

Query:   123 SQKRAQIPAKKSNKKK 138
             SQK A +  KK+   K
Sbjct:   124 SQKPAPVKGKKAEFAK 139

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q3T0L7 RPL28 "60S ribosomal protein L28" [Bos taurus (taxid:9913)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 56/138 (40%), Positives = 85/138 (61%)

Query:     2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
             +S+HL W +V+N +++L+K +  K+ +S EP NL    SF+Y+GLIH KT+ ++P AD K
Sbjct:     1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query:    62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
             G   V KR + + KP  + ++       R +L  +R  I  NKYR +L  AA+RRASA+L
Sbjct:    59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query:   122 QSQKRAQIPAKKSNKKKA 139
             +SQK   +  K S   K+
Sbjct:   119 RSQKPVMVKRKPSRPTKS 136

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2R0A6 RPL28 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 55/138 (39%), Positives = 86/138 (62%)

Query:     2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
             +S+HL W +V+N +++L+K +  K+ +S EP NL    SF+Y+GLIH KT+ ++P AD K
Sbjct:     1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query:    62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
             G   V KR + + KP  + ++       R +L  +R  I  NKYR +L  AA+RRASA+L
Sbjct:    59 GVVVVLKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query:   122 QSQKRAQIPAKKSNKKKA 139
             +SQK   +  K++   K+
Sbjct:   119 RSQKPVMVKRKRARPTKS 136

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P46779 RPL28 "60S ribosomal protein L28" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 55/138 (39%), Positives = 86/138 (62%)

Query:     2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
             +S+HL W +V+N +++L+K +  K+ +S EP NL    SF+Y+GLIH KT+ ++P AD K
Sbjct:     1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query:    62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
             G   V KR + + KP  + ++       R +L  +R  I  NKYR +L  AA+RRASA+L
Sbjct:    59 GVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query:   122 QSQKRAQIPAKKSNKKKA 139
             +SQK   +  K++   K+
Sbjct:   119 RSQKPVMVKRKRTRPTKS 136

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:101839 Rpl28 "ribosomal protein L28" [Mus musculus (taxid:10090)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 55/138 (39%), Positives = 86/138 (62%)

Query:     2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
             +S+HL W +V+N +++L+K +  K+ +S EP NL    SF+Y+GLIH KT+ ++P AD K
Sbjct:     1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query:    62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
             G   V KR + + KP  + ++       R +L  +R  I  NKYR +L  AA+RRASA+L
Sbjct:    59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query:   122 QSQKRAQIPAKKSNKKKA 139
             +SQK   +  K++   K+
Sbjct:   119 RSQKPVVVKRKRTRPTKS 136

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|2318912 LOC100362069 "ribosomal protein L28-like" [Rattus norvegicus (taxid:10116)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 55/138 (39%), Positives = 87/138 (63%)

Query:     2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
             +S+HL W +V+N +++L+K +  K+ +S EP NL    SF+Y+GLIH KT+ ++P AD K
Sbjct:     1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKAGNSFRYNGLIHRKTVGVEPAADGK 58

Query:    62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
             G   V KR + + KP  + ++       R +L  +R  I  NKYR +L+ AA+RRASA+L
Sbjct:    59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLSMAAIRRASAIL 118

Query:   122 QSQKRAQIPAKKSNKKKA 139
             +SQK   +  K++   K+
Sbjct:   119 RSQKPVVVKRKRTRPTKS 136

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q642E2 Rpl28 "Ribosomal protein L28" [Rattus norvegicus (taxid:10116)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 55/138 (39%), Positives = 86/138 (62%)

Query:     2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
             +S+HL W +V+N +++L+K +  K+ +S EP NL    SF+Y+GLIH KT+ ++P AD K
Sbjct:     1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58

Query:    62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
             G   V KR + + KP  + ++       R +L  +R  I  NKYR +L  AA+RRASA+L
Sbjct:    59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query:   122 QSQKRAQIPAKKSNKKKA 139
             +SQK   +  K++   K+
Sbjct:   119 RSQKPVVVKRKRTRPTKS 136

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

ZFIN|ZDB-GENE-040930-10 rpl28 "ribosomal protein L28" [Danio rerio (taxid:7955)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 56/139 (40%), Positives = 84/139 (60%)

Query:     1 MVSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADN 60
             M S HL W +++N++++L+K +  K+ +S EP NL    +F+++GLIH KTI I+P AD 
Sbjct:     1 MASPHLQWMVIRNSSSFLIKRN--KQTYSTEPNNLKARNAFRFNGLIHRKTIGIEPAADG 58

Query:    61 KGFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAV 120
             KG   V K+ + + KP  +  K       R +L  +R  I  NKYR++L  AALRR SA+
Sbjct:    59 KGVVVVLKKRSGQRKPATSYGKITINKNSRATLASVRNIIRKNKYRRDLRMAALRRVSAI 118

Query:   121 LQSQKRAQIPAKKSNKKKA 139
             L SQK   +  K+S   K+
Sbjct:   119 LSSQKPVVVRKKRSRAPKS 137

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

RGD|1565183 RGD1565183 "similar to ribosomal protein L28" [Rattus norvegicus (taxid:10116)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 53/138 (38%), Positives = 84/138 (60%)

Query:     2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
             +S+HL W +V+N +++L+K +  K+ +S EP NL    SF Y+GLIH KT+ ++PTAD K
Sbjct:     1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPKNLKARNSFGYNGLIHRKTVGVEPTADGK 58

Query:    62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
             G   V KR + + KP  + ++       R +L  +R+ I  NKY  +L    +RRASA+L
Sbjct:    59 GVVVVMKRRSGQRKPAISYVRTTINKNARATLSSIRQMIRKNKYHPDLRMVTIRRASAIL 118

Query:   122 QSQKRAQIPAKKSNKKKA 139
             +SQK   +  K++   K+
Sbjct:   119 RSQKPVVVKRKRTRPTKS 136

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

RGD|621193 Rpl28 "ribosomal protein L28" [Rattus norvegicus (taxid:10116)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 53/138 (38%), Positives = 84/138 (60%)

Query:     2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNK 61
             +S+HL W +V+N +++L+K +  K+ +S EP NL    SF+Y+GLIH KT+ ++   D K
Sbjct:     1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGK 58

Query:    62 GFACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL 121
             G   V KR + + KP  + ++       R +L  +R  I  NKYR +L  AA+RRASA+L
Sbjct:    59 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 118

Query:   122 QSQKRAQIPAKKSNKKKA 139
             +SQK   +  K++   K+
Sbjct:   119 RSQKPVVVKRKRTRPTKS 136

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q21930	RL28_CAEEL	No assigned EC number	0.3643	0.8510	0.9523	yes	N/A
P17702	RL28_RAT	No assigned EC number	0.3812	0.9716	1.0	yes	N/A
Q3T0L7	RL28_BOVIN	No assigned EC number	0.4028	0.9716	1.0	yes	N/A
P46779	RL28_HUMAN	No assigned EC number	0.3956	0.9716	1.0	yes	N/A
Q9VZS5	RL28_DROME	No assigned EC number	0.5187	0.9432	0.9236	yes	N/A
O14069	RL28E_SCHPO	No assigned EC number	0.3149	0.8723	0.9179	yes	N/A
P41105	RL28_MOUSE	No assigned EC number	0.3956	0.9716	1.0	yes	N/A
Q9GS21	RL28_DICDI	No assigned EC number	0.3362	0.7730	0.8257	yes	N/A
O82204	RL281_ARATH	No assigned EC number	0.3916	0.9361	0.9230	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	141
pfam01778	114	pfam01778, Ribosomal_L28e, Ribosomal L28e protein	4e-31

>gnl|CDD|201967 pfam01778, Ribosomal_L28e, Ribosomal L28e protein family

 Score =  107 bits (269), Expect = 4e-31
 Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 5/119 (4%)

Query: 6   LIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFAC 65
           LIW I++ NN +L+K +   K FS+EP NL  L S KYSGL +SK + + PTA   G   
Sbjct: 1   LIWEIIRKNNCFLVKRN--GKTFSREPYNLTGLCSRKYSGLANSKYVTVVPTA-KGGVVL 57

Query: 66  VTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQ 124
           VTK+  + +KP K   K       R++L +++K +    YR +L K A RRAS +L+SQ
Sbjct: 58  VTKKPKRAHKPAKLWEKVTLSKNYRKALKQIKKAL--AYYRPDLIKKAKRRASKLLRSQ 114

Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PTZ00197	146	60S ribosomal protein L28; Provisional	100.0
KOG3412|consensus	133		100.0
PF01778	117	Ribosomal_L28e: Ribosomal L28e protein family; Int	100.0
PLN00040	233	Protein MAK16 homolog; Provisional	100.0
KOG3064|consensus	303		99.8
COG5129	303	MAK16 Nuclear protein with HMG-like acidic region	99.69

>PTZ00197 60S ribosomal protein L28; Provisional

Probab=100.00  E-value=1.2e-48  Score=296.99  Aligned_cols=115  Identities=23%  Similarity=0.346  Sum_probs=110.6

Q ss_pred             CCcceeeeeecCeeeEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCcceeEE
Q psy6028           3 SSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIK   82 (141)
Q Consensus         3 S~dL~W~ivr~nnsFlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPak~~~~   82 (141)
                      |+||||||||+|||||+|++  |.+||+||+||+|+||++||||+|+|+|||+ + |++||+|++|+.+..++|++++.+
T Consensus         4 S~dL~W~iVRnnnsFLvKr~--g~~FSrEP~NL~n~nS~KysGL~n~KaVgV~-~-~~kgVvv~tKk~k~~~kPak~~~~   79 (146)
T PTZ00197          4 STDLQWLLVRQNSKFLQKRN--GIRLSSDPFNNNANWTKRHCGFLNTKAAVVK-T-KGDRILVTTKDGSSNNKPKQMYKK   79 (146)
T ss_pred             chheeeeeeeccceeEEccC--CCcccCCCCccccccccccccccccceEEEE-e-cCCEEEEEEecCCCCCCCchheeE
Confidence            78999999999999999998  8999999999999999999999999999999 5 899999999999999999999999


Q ss_pred             EeecCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhcC
Q psy6028          83 QEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQK  125 (141)
Q Consensus        83 ~~l~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai~~sqk  125 (141)
                      ++|++|+|++  .|++++.+  |||||+++|++|||||||||-
T Consensus        80 ~tlkkg~Rr~--~V~~~v~~--YR~DL~~aAlrRASAIlrs~~  118 (146)
T PTZ00197         80 TVMAAGVRAS--VVSRAVAA--VRPDLASVAFRRARKMACTAS  118 (146)
T ss_pred             EeeccCccHH--HHHHHHHh--hCHHHHHHHHHHHHHHHHHHH
Confidence            9999999998  59999876  999999999999999999974

>KOG3412|consensus

Probab=100.00  E-value=1.3e-48  Score=289.60  Aligned_cols=129  Identities=48%  Similarity=0.745  Sum_probs=124.1

Q ss_pred             CCCCcceeeeeecCeeeEEeeC-CCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCcce
Q psy6028           1 MVSSHLIWNIVKNNNAYLMKAD-NIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKA   79 (141)
Q Consensus         1 mmS~dL~W~ivr~nnsFlvK~~-~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPak~   79 (141)
                      .||+||+||+||||||||+|+. +++.+||+||+||.++|||+||||+|+++|||+|+++++||++++|+.+.+++|+++
T Consensus         2 a~S~~L~W~VIRnNn~FL~k~r~~~k~~FstEpnNL~~vnS~rySGL~nkKtvgV~~aA~~kgvvv~~kk~K~aqkPAk~   81 (133)
T KOG3412|consen    2 ATSGHLIWQVIRNNNAFLVKQRGNVKKQFSTEPNNLKNVNSYRYSGLANKKTVGVIPAADKKGVVVVTKKTKGAQKPAKS   81 (133)
T ss_pred             CcccceeeeeeecCCceeeeeccccccccccCCcccccccccccccccccceeeeeecCCCceEEEEEeccccccCchhh
Confidence            3899999999999999999987 568999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeecCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhcCccCC
Q psy6028          80 VIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQKRAQI  129 (141)
Q Consensus        80 ~~~~~l~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai~~sqk~~~~  129 (141)
                      +.+++|++++|+++++|++++..++|||||+++|++|+|+|.+++++++.
T Consensus        82 ~~k~~~~k~~r~s~k~la~~i~~nkYR~Dl~~aaiaR~s~~~k~~~v~kt  131 (133)
T KOG3412|consen   82 VVKSTLKKEPRRSLKSLANQIGDNKYRPDLRKAALARLSAISKSARVKKT  131 (133)
T ss_pred             hhHHHHhcccHHHHHHHHHHhhhcccchHHHHHHHHHhhccccccccccc
Confidence            99999999999999999999999999999999999999999999998753

>PF01778 Ribosomal_L28e: Ribosomal L28e protein family; InterPro: IPR002672 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2e-46  Score=275.71  Aligned_cols=117  Identities=49%  Similarity=0.777  Sum_probs=96.2

Q ss_pred             ceeeeeecCeeeEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCcceeEEEee
Q psy6028           6 LIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAVIKQEW   85 (141)
Q Consensus         6 L~W~ivr~nnsFlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPak~~~~~~l   85 (141)
                      |+|||||+|||||+|++++|.+||+||+||+|+||++||||||+++|||++++ +|+|+|++|+.+..++|+++|.+++|
T Consensus         1 L~W~iir~~~~Fl~K~~~~~~~fs~ep~NL~~~~s~kysgLan~k~v~V~~~~-~g~v~l~~K~~~~~~~P~k~~~~~~l   79 (117)
T PF01778_consen    1 LQWEIIRNNNCFLVKRNGIGKTFSREPGNLTNLNSFKYSGLANSKAVGVRPAP-NGGVVLVTKKPKRANKPAKSWEKVTL   79 (117)
T ss_dssp             HHHHHHTTT-TTEEEET--TEEEE--TT-SSSB-STTT-TTTSS--EECCCEG-GGECCCEEE-----TTTT--EEEEEE
T ss_pred             CEEEEecCcceEEEEeCCCCCcccCCCCcccccccccccccccceeEEEEECC-CCcEEEEEccccccCCCcceeEEEec
Confidence            79999999999999998779999999999999999999999999999999986 67999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhc
Q psy6028          86 KSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQ  124 (141)
Q Consensus        86 ~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai~~sq  124 (141)
                      ++|+|+++++|++.+.. +|||||..+|++|+|+|++||
T Consensus        80 ~k~~r~a~~~I~~~~~~-~yr~dL~~~a~~R~s~i~~sq  117 (117)
T PF01778_consen   80 SKNSRKALKSIKKQLAK-KYRPDLRKAALRRASAILRSQ  117 (117)
T ss_dssp             SSCHHHHHHHHHHHTSS-THHHHHCCHHHHHHHHHCCH-
T ss_pred             CccHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcC
Confidence            99999999999999998 899999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L28e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes. In rat there are 9 or 10 copies of the L28 gene. The L28 protein contains a possible internal duplication of 9 residues [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1D_O 4A1B_O 4A18_O 4A19_O 3IZR_b.

>PLN00040 Protein MAK16 homolog; Provisional

Probab=100.00  E-value=6.2e-35  Score=236.51  Aligned_cols=115  Identities=19%  Similarity=0.273  Sum_probs=105.1

Q ss_pred             CCCCcceeeeeecCee-eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCcce
Q psy6028           1 MVSSHLIWNIVKNNNA-YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKA   79 (141)
Q Consensus         1 mmS~dL~W~ivr~nns-FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPak~   79 (141)
                      |||+||+|+||+++|| |++|+.  +.+||+||+||||+||++||||||++++||.++  +|+|+|++|+.+++|+|+++
T Consensus         1 m~SddLiW~IIr~~~csF~vK~~--~~~Fcrnp~NltglcsrkycgLANsKyatV~~~--~G~v~L~~Kt~erah~Pak~   76 (233)
T PLN00040          1 MQHDEVIWQVINHNHCSFKAKID--TGNFCRNKYNVTGLCNRSSCPLANSRYATIREE--DGRFYLYMKTIERAHMPNKL   76 (233)
T ss_pred             CCccchhhhhhcCcceeEEEccC--CCcccCCCCcccccccccccccccceeeEEEEc--CCEEEEEEecccccCCcccc
Confidence            9999999999999999 888887  889999999999999999999999999999996  68899999999999999999


Q ss_pred             eEEEeecCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHH
Q psy6028          80 VIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVL  121 (141)
Q Consensus        80 ~~~~~l~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai~  121 (141)
                      |.+++|++|+|+++++|.+.+.  ++=.-|..-+-.|..+|.
T Consensus        77 w~kv~Lskn~rkalk~I~~~L~--~w~~~~ihk~KqRltkl~  116 (233)
T PLN00040         77 WEKVKLSRNYEKALEQIDKHLA--YWPKFLVHKNKQRLTKMT  116 (233)
T ss_pred             eEEEecCCCHHHHHHHHHHHHh--hCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  355567766766666653

>KOG3064|consensus

Probab=99.80  E-value=3e-20  Score=152.89  Aligned_cols=113  Identities=16%  Similarity=0.279  Sum_probs=101.0

Q ss_pred             CCCCcceeeeeecCee-eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCcce
Q psy6028           1 MVSSHLIWNIVKNNNA-YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKA   79 (141)
Q Consensus         1 mmS~dL~W~ivr~nns-FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPak~   79 (141)
                      |||++++|++|.+++| |.+|..  +.+||++.+||||+|++..|+|||+++.+|...  +|.++|++|.+.++|-|.++
T Consensus         1 Mq~DeviW~vin~~~CS~k~kte--~~~fCRNeyNvTGLCnR~SCPLANSrYATVre~--~g~~yLymKt~ERaH~P~kl   76 (303)
T KOG3064|consen    1 MQSDEVIWQVINKSFCSYKIKTE--TQTFCRNEYNVTGLCNRSSCPLANSRYATVREE--NGVLYLYMKTIERAHMPRKL   76 (303)
T ss_pred             CcchHHHHHHhchhhcceeeecc--ccchhccccccceeeccccCcCccccceeEeec--CCEEEEEEechhhhcCcHHH
Confidence            9999999999998887 999997  889999999999999999999999999999974  78899999999999999999


Q ss_pred             eEEEeecCCchHHHHHHHHHhhcCCCCHh-HHHHHHHHHHHH
Q psy6028          80 VIKQEWKSGPRRSLLKLRKYIVGNKYRKE-LTKAALRRASAV  120 (141)
Q Consensus        80 ~~~~~l~k~~R~~~~~i~~~~~~~~yR~D-L~~~Al~RaSai  120 (141)
                      |.+|.|++|+-+++.+|...+-   |=|. ++.-.-.|.++|
T Consensus        77 wErikLSkNyekALeQIde~Ll---~Wp~~~~HKcKQRltkl  115 (303)
T KOG3064|consen   77 WERIKLSKNYEKALEQIDEQLL---YWPKYVIHKCKQRLTKL  115 (303)
T ss_pred             HHHHhcchhHHHHHHHHHHHHh---cchHHHHHHHHHHHHHH
Confidence            9999999999999999999887   5554 344455555554

>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]

Probab=99.69  E-value=2.2e-17  Score=134.46  Aligned_cols=113  Identities=14%  Similarity=0.264  Sum_probs=99.0

Q ss_pred             CCCcceeeeeecCee-eEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCccee
Q psy6028           2 VSSHLIWNIVKNNNA-YLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPGKAV   80 (141)
Q Consensus         2 mS~dL~W~ivr~nns-FlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPak~~   80 (141)
                      ||++.+|+++-.++| |-+|..  +..||++.+|+||+|.+-.|+|+|+++.+|.+  +||.++|++|.+.++|-|++.|
T Consensus         1 msDE~~Wqv~g~~fCS~rik~e--~qnfCRNeyNVTGLC~RqSCPLANSrYATVr~--dngkLyLymKtpERaH~P~klw   76 (303)
T COG5129           1 MSDESLWQVSGENFCSFRIKTE--EQNFCRNEYNVTGLCDRQSCPLANSRYATVRA--DNGKLYLYMKTPERAHVPRKLW   76 (303)
T ss_pred             CchhHHHHHccccccceeeecc--hhhhhhcccccceeeccccCcCccCcceEEEe--cCCEEEEEecChhhccCcHHHH
Confidence            899999999999998 999987  88999999999999999999999999999997  5889999999999999999999


Q ss_pred             EEEeecCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHH
Q psy6028          81 IKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAV  120 (141)
Q Consensus        81 ~~~~l~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai  120 (141)
                      .+|.|++|+-.++++|...+-  ++-.-...-+-.|.+.|
T Consensus        77 erIkLSkNY~kAL~QIde~Ll--~W~~~~iHkCKQrltkL  114 (303)
T COG5129          77 ERIKLSKNYEKALKQIDESLL--FWDEKVIHKCKQRLTKL  114 (303)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh--cccHHHHHHHHHHHHHH
Confidence            999999999999999998876  13223444454555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	141
3izr_b	147	Localization Of The Large Subunit Ribosomal Protein		2e-15

>pdb|3IZR|BB Chain b, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 147

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 2   VSSHLIWNIVKNNNAYLMKA---DNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTA 58
           V   LIW IVK NN +L+K     N K  F+KEP NL N+ S+K+SGL + KT+ IQP+ 
Sbjct: 4   VPEPLIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSG 63
Query: 59  DNKGFACVTKRATKKYK-PGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRA 117
                  ++   TKK   P K   K   +   R+    ++  +  N YR +LTK AL R 
Sbjct: 64  VKDAAVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARL 123
Query: 118 SAVLQSQKRAQIPAKKSNKK 137
           S+V +S + ++  AKK N++
Sbjct: 124 SSVYRSLQVSKSGAKKKNRQ 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
3iz5_B	261	60S ribosomal protein L2 (L2P); eukaryotic ribosom	7e-27
4a18_O	134	RPL28, ribosomal protein L22; ribosome, eukaryotic	1e-22

>4a18_O RPL28, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_O 4a1b_O 4a1d_O Length = 134

 Score = 86.0 bits (212), Expect = 1e-22
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 4/135 (2%)

Query: 4   SHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGF 63
           S L+W IVKNNNA+L+K + +   F+ +P ++    +    G  H   + ++  A  K  
Sbjct: 2   SQLVWEIVKNNNAFLVKNNGVA--FTTDPFSVTGRNTQVGLGFTHRHGVALKGGA--KQA 57

Query: 64  ACVTKRATKKYKPGKAVIKQEWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQS 123
              + R  + +K  K    +      +  + ++ K I G    K L + AL++     ++
Sbjct: 58  IATSLRKNQSHKVKKTGTIEAETLTVKGGVQRVAKVIRGRFQSKGLKQFALKKLVNFHRA 117

Query: 124 QKRAQIPAKKSNKKK 138
             RAQ   K  +K K
Sbjct: 118 NVRAQANLKAESKAK 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
3iz5_b	147	60S ribosomal protein L28 (L28E); eukaryotic ribos	100.0
4a18_O	134	RPL28, ribosomal protein L22; ribosome, eukaryotic	100.0

>4a18_O RPL28, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_O 4a1b_O 4a1d_O

Probab=100.00  E-value=8.7e-50  Score=299.58  Aligned_cols=122  Identities=24%  Similarity=0.315  Sum_probs=115.4

Q ss_pred             CCCcceeeeeecCeeeEEeeCCCCcccccCCCCCCccccccccccccceeEEEEEcCCCCeEEEEEecCCCCCCCc----
Q psy6028           2 VSSHLIWNIVKNNNAYLMKADNIKKWFSKEPGNLPNLASFKYSGLIHSKTIHIQPTADNKGFACVTKRATKKYKPG----   77 (141)
Q Consensus         2 mS~dL~W~ivr~nnsFlvK~~~~~~~FS~EP~NLtn~~s~kysGLan~kav~V~~~~~~kgv~l~~Kk~k~~~kPa----   77 (141)
                      || ||||||||+|||||+|++  |.+||+||+||+|+|||+||||||+|+|||+|++| +|  |++|+.+.+++|+    
T Consensus         1 MS-dL~W~ivrnnnsFLvKr~--g~~FS~eP~NL~n~~S~kysGLan~KavgV~~~~~-gg--v~~Kk~k~~~kPa~~~~   74 (134)
T 4a18_O            1 MS-QLVWEIVKNNNAFLVKNN--GVAFTTDPFSVTGRNTQVGLGFTHRHGVALKGGAK-QA--IATSLRKNQSHKVKKTG   74 (134)
T ss_dssp             CH-HHHHHHHTTTCTTEEEET--TEEEECCTTCSSSBCSTTTCTTTSSCCEEEEEEGG-GE--EEEEEECCCCCCSSCCS
T ss_pred             Cc-ceeehhhcCcceEEEeeC--CccccCCCCCccceeccccccccccceeEEEEcCC-Cc--EEEecCcccCCCCcccc
Confidence            67 999999999999999998  89999999999999999999999999999999755 45  8999999999999    


Q ss_pred             ceeEEE-eecCCchHHHHHHHHHhhcCCCCHhHHHHHHHHHHHHHhhcCccCCcccc
Q psy6028          78 KAVIKQ-EWKSGPRRSLLKLRKYIVGNKYRKELTKAALRRASAVLQSQKRAQIPAKK  133 (141)
Q Consensus        78 k~~~~~-~l~k~~R~~~~~i~~~~~~~~yR~DL~~~Al~RaSai~~sqk~~~~~k~~  133 (141)
                      +++.++ ++++|+|+++++|++++.++    ||+++|++|||||++||+|+.++++.
T Consensus        75 k~~~~~~~~~k~~Rk~~k~I~~~~~~~----DL~~aAl~RaSailrSqk~~~~~~k~  127 (134)
T 4a18_O           75 TIEAETLTVKGGVQRVAKVIRGRFQSK----GLKQFALKKLVNFHRANVRAQANLKA  127 (134)
T ss_dssp             CSSEEEEEESSTHHHHHHHHHHHCCSH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEeccccchHHHHHHHHHHHhhc----hHHHHHHHHHHHHHHhcCcccccccc
Confidence            999999 99999999999999999863    99999999999999999999888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00