Psyllid ID: psy6039

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MALPPGQNLPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ
Secondary Structure (PSIPRED)
ccccccccccccEEEEcccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEcccccccccEEEEEEcccHcccHcHHHHHHHHHHHHHHHHHccccEEEEEccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHHcccHHHHHcccccccHHHEEEEEccccccHHHHHHHHHHHHHHHccHHHHHcccccHHHccccHHcc
Coil and Loop (DISEMBL)
malppgqnlpyevktatslessdydgIVLVsnkvpedaaypqPIIKLLQEQSkidkgfnddiTLLHsslpasrfvyaptgnmtkeyDDVRSYAEAAKKGIARALKAGitkpllalpsdpnfpksEVVTLLGAMEGLYTnlqyrefkpeifpkvkvlgiwspkldgaglESVVSAATTLESARWVARdiggtdpermappvinq
Flexible Loop (DISEMBL)
malppgqnlpYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKpllalpsdpnfPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARdiggtdpermappvinq
Low Complexity Region (SEG)
MALPPGQNLPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ
Disordered region (IsUnstruct)
***********************YDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDI***************
Disordered Region (DISOPRED)
****P**NLPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPP****
Disordered Region (DISEMBL)
MALPPGQNLPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ
Disordered Region (DISPRO)
*******NLPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALPPGQNLPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q27245	522	Putative aminopeptidase W	yes	N/A	0.926	0.360	0.351	4e-21

>sp|Q27245|YH24_CAEEL Putative aminopeptidase W07G4.4 OS=Caenorhabditis elegans GN=W07G4.4 PE=1 SV=1

 Score =  101 bits (251), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 14/202 (6%)

Query: 9   LPYEVKTATSLESSDYDGIVLVSNK--VPEDAAYPQ--PIIKLLQEQSKIDKGFNDDITL 64
           L  ++  ATS+  + +D +VLV ++  V +  A  Q   I   +    K+  G  +  +L
Sbjct: 7   LSTKIVRATSIADAAFDAVVLVGSQDNVQQFGAIQQVSAIAPAVNNFLKLHSGAFNSTSL 66

Query: 65  LH---SSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNF 121
           +    S +P+ R + + TGN++++YDDVR Y  AA+KGI+ AL AG+  PLL    +  F
Sbjct: 67  VQVDSSVVPSGRLILSGTGNVSRDYDDVRRYQAAARKGISMALSAGVKSPLLITLPNSRF 126

Query: 122 PKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWS--PKLDGAGLESVVSAATTLE 179
           P +E+V  LGA+  +YT L  RE   E   K+  LG+ +       A LE +V A    +
Sbjct: 127 PNAELVAALGALTPVYTPLNVRE--EENKQKLNQLGLLAIGNSDTSARLEKLVEA---YD 181

Query: 180 SARWVARDIGGTDPERMAPPVI 201
           ++  V RD+G   PERMAPP +
Sbjct: 182 ASFTVCRDVGEAGPERMAPPRV 203

Caenorhabditis elegans (taxid: 6239)
EC: 3EC: .EC: 4EC: .EC: 1EC: 1EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
345497946	596	PREDICTED: putative aminopeptidase W07G4	0.950	0.323	0.482	3e-41
156545944	526	PREDICTED: putative aminopeptidase W07G4	0.950	0.366	0.482	4e-41
350405407	535	PREDICTED: LOW QUALITY PROTEIN: putative	0.950	0.360	0.471	5e-41
322790755	296	hypothetical protein SINV_14675 [Solenop	0.950	0.652	0.471	5e-41
380024120	619	PREDICTED: putative aminopeptidase W07G4	0.940	0.308	0.472	5e-41
328780399	517	PREDICTED: putative aminopeptidase W07G4	0.940	0.369	0.467	1e-40
383860042	641	PREDICTED: putative aminopeptidase W07G4	0.950	0.301	0.471	1e-40
307193513	561	Putative aminopeptidase W07G4.4 [Harpegn	0.950	0.344	0.392	4e-36
392883250	520	Dipeptidase B-like protein [Callorhinchu	0.950	0.371	0.439	5e-36
387913982	520	transcobalamin 2 [Callorhinchus milii]	0.950	0.371	0.439	5e-36

>gi|345497946|ref|XP_003428103.1| PREDICTED: putative aminopeptidase W07G4.4-like isoform 3 [Nasonia vitripennis]

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 94/195 (48%), Positives = 125/195 (64%), Gaps = 2/195 (1%)

Query: 9   LPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSS 68
           LP ++K  T++ S DYDGIVLVS   P  +  P+P   +L   ++ID G  +   +L  +
Sbjct: 76  LPSQLKIETNVCSPDYDGIVLVSG-TPPGSEEPEPFKSVLFCAAQIDSGLFELGAVLPIN 134

Query: 69  LPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVT 128
           LPA R +Y+PTG++  +YDDVR + EAA KGI RAL+AG+  PLL L  D  F  +E+VT
Sbjct: 135 LPAKRLIYSPTGSINPDYDDVRVFKEAAVKGIKRALQAGVRNPLLVLLPDSRFENTELVT 194

Query: 129 LLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDI 188
           LLGA+E LY  L+ RE   E   K   L +WSP +    L+ VV  A  LES R+VARDI
Sbjct: 195 LLGALEALYVPLEVREIGSERTHKAAQLAVWSP-ICSKKLQGVVKLAGALESGRYVARDI 253

Query: 189 GGTDPERMAPPVINQ 203
           GG+DPERMAPP + +
Sbjct: 254 GGSDPERMAPPRVEE 268

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545944|ref|XP_001603380.1| PREDICTED: putative aminopeptidase W07G4.4-like isoform 1 [Nasonia vitripennis] gi|345497943|ref|XP_003428102.1| PREDICTED: putative aminopeptidase W07G4.4-like isoform 2 [Nasonia vitripennis]

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/195 (48%), Positives = 125/195 (64%), Gaps = 2/195 (1%)

Query: 9   LPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSS 68
           LP ++K  T++ S DYDGIVLVS   P  +  P+P   +L   ++ID G  +   +L  +
Sbjct: 6   LPSQLKIETNVCSPDYDGIVLVSG-TPPGSEEPEPFKSVLFCAAQIDSGLFELGAVLPIN 64

Query: 69  LPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVT 128
           LPA R +Y+PTG++  +YDDVR + EAA KGI RAL+AG+  PLL L  D  F  +E+VT
Sbjct: 65  LPAKRLIYSPTGSINPDYDDVRVFKEAAVKGIKRALQAGVRNPLLVLLPDSRFENTELVT 124

Query: 129 LLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDI 188
           LLGA+E LY  L+ RE   E   K   L +WSP +    L+ VV  A  LES R+VARDI
Sbjct: 125 LLGALEALYVPLEVREIGSERTHKAAQLAVWSP-ICSKKLQGVVKLAGALESGRYVARDI 183

Query: 189 GGTDPERMAPPVINQ 203
           GG+DPERMAPP + +
Sbjct: 184 GGSDPERMAPPRVEE 198

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405407|ref|XP_003487425.1| PREDICTED: LOW QUALITY PROTEIN: putative aminopeptidase W07G4.4-like [Bombus impatiens]

 Score =  173 bits (438), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 123/195 (63%), Gaps = 2/195 (1%)

Query: 9   LPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSS 68
           +P ++K   ++ S DYDGI+LVS   P     P+P   +L   ++ID        +L  +
Sbjct: 8   MPCQLKIEPNICSCDYDGIILVSGCAP-GFDEPEPFKTVLFSAAQIDSALGVIGAVLSIN 66

Query: 69  LPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVT 128
           LPA R +Y+PTG +  +Y DVRS+AEAA KG+ RALKAG+  PLLAL  D  F   E+VT
Sbjct: 67  LPAKRLIYSPTGPLNMDYHDVRSFAEAATKGVKRALKAGVRCPLLALLPDIRFENVELVT 126

Query: 129 LLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDI 188
           LLGA+EGLY  L+ RE  P+   K   L +WSP +    L+ +V  A+ LES R+VARDI
Sbjct: 127 LLGALEGLYVPLEVRETCPDRCYKACQLAVWSP-ICSKKLQGIVKLASALESGRYVARDI 185

Query: 189 GGTDPERMAPPVINQ 203
           GG DPERMAPP + +
Sbjct: 186 GGADPERMAPPRVEE 200

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790755|gb|EFZ15499.1| hypothetical protein SINV_14675 [Solenopsis invicta]

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 123/195 (63%), Gaps = 2/195 (1%)

Query: 9   LPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSS 68
           +P ++K  T++ S DYDGI+LVS   P  +  P+P   +L   ++ID        +L  +
Sbjct: 2   MPCQLKIETNICSGDYDGIILVSGSTP-GSNEPEPFKTVLYAAAQIDAALGVIGAVLPIN 60

Query: 69  LPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVT 128
           L A R +Y+PTG +  +Y DVRS+AEAA KGI RALKAG+  PLL L  D  F   E+VT
Sbjct: 61  LLAKRLIYSPTGPLNMDYHDVRSFAEAATKGIKRALKAGVKCPLLVLLPDDRFENVELVT 120

Query: 129 LLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDI 188
           LLGA+E LY  L+ RE  P+   K   LG+WSP +    L+ +V  A+ LES R+VARDI
Sbjct: 121 LLGALEALYVPLEVREICPDRCYKACQLGVWSP-ICSKKLQGIVKLASALESGRYVARDI 179

Query: 189 GGTDPERMAPPVINQ 203
           GG DPERMAPP + +
Sbjct: 180 GGADPERMAPPRVEE 194

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024120|ref|XP_003695854.1| PREDICTED: putative aminopeptidase W07G4.4-like [Apis florea]

 Score =  172 bits (437), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 123/197 (62%), Gaps = 6/197 (3%)

Query: 9   LPYEVKTATSLESSDYDGIVLVSNKVPEDAAY--PQPIIKLLQEQSKIDKGFNDDITLLH 66
           +P ++K   ++ S DYDGI+LVS   P    Y  P+P   +L   ++ID        +L 
Sbjct: 8   MPCQLKIEPNICSCDYDGIILVSGCAP---GYDEPEPFKTVLFSAAQIDSALGVIGAVLP 64

Query: 67  SSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEV 126
            +LPA R +Y+PTG +  +Y DVRS+AEAA KG+ RALKAG+  PL AL  D  F   E+
Sbjct: 65  INLPAKRLIYSPTGPLNMDYHDVRSFAEAATKGVKRALKAGVRCPLFALLPDIRFENVEL 124

Query: 127 VTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVAR 186
           VTLLGA+EG Y  L+ RE  P+   K   LG+WSP +    L+ +V  A+ LES R+VAR
Sbjct: 125 VTLLGALEGFYVPLEVRETCPDRCYKACQLGVWSP-ICSKKLQGIVKLASALESGRYVAR 183

Query: 187 DIGGTDPERMAPPVINQ 203
           DIGG DPERMAPP I +
Sbjct: 184 DIGGADPERMAPPRIEE 200

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780399|ref|XP_394104.2| PREDICTED: putative aminopeptidase W07G4.4-like [Apis mellifera]

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/197 (46%), Positives = 123/197 (62%), Gaps = 6/197 (3%)

Query: 9   LPYEVKTATSLESSDYDGIVLVSNKVPEDAAY--PQPIIKLLQEQSKIDKGFNDDITLLH 66
           +P ++K   ++ S DYDGI+LVS   P    Y  P+P   +L   ++ID        +L 
Sbjct: 8   MPCQLKIEPNICSCDYDGIILVSGCAP---GYDEPEPFKTVLFSAAQIDSALGVIGAVLP 64

Query: 67  SSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEV 126
            +LPA R +Y+PTG +  +Y DVRS+AEAA KG+ RALKAG+  PL AL  D  F   E+
Sbjct: 65  INLPAKRLIYSPTGPLNMDYHDVRSFAEAATKGVKRALKAGVRCPLFALLPDIRFENVEL 124

Query: 127 VTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVAR 186
           VTLLGA+EG Y  L+ RE  P+   K   LG+WSP +    L+ +V  A+ LES R+VAR
Sbjct: 125 VTLLGALEGFYVPLEVRETCPDRCYKACQLGVWSP-ICSKKLQGIVKLASALESGRYVAR 183

Query: 187 DIGGTDPERMAPPVINQ 203
           DIGG DPERMAPP + +
Sbjct: 184 DIGGADPERMAPPRVEE 200

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860042|ref|XP_003705500.1| PREDICTED: putative aminopeptidase W07G4.4-like [Megachile rotundata]

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 123/195 (63%), Gaps = 2/195 (1%)

Query: 9   LPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSS 68
           +P ++K   ++ S DYDGI+LVS   P     P+P   +L   ++ID        +L  +
Sbjct: 8   MPCQLKIEPNICSCDYDGIILVSGCAP-GFDEPEPFKTVLYSAAQIDSALGVIGAVLPIN 66

Query: 69  LPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVT 128
           LPA R +Y+PTG +  +Y DVRS+AEAA KG+ RALKAG+  PLLAL  D  F   E+VT
Sbjct: 67  LPAKRLIYSPTGPLNMDYHDVRSFAEAATKGVQRALKAGVRCPLLALLPDIRFENVELVT 126

Query: 129 LLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDI 188
           LLGA+EGLY  L+ RE  P+   K   L +WSP +    L+ +V  A+ LES R+VARDI
Sbjct: 127 LLGALEGLYVPLEVRETCPDRCYKACQLAVWSP-ICSKKLQGIVKLASALESGRYVARDI 185

Query: 189 GGTDPERMAPPVINQ 203
           GG DPERMAPP + +
Sbjct: 186 GGADPERMAPPRVEE 200

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193513|gb|EFN76290.1| Putative aminopeptidase W07G4.4 [Harpegnathos saltator]

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/227 (39%), Positives = 122/227 (53%), Gaps = 34/227 (14%)

Query: 9   LPYEVKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSS 68
           LP +V+    + SSDYDG++LVS   P     P+P   +L   ++ID G      +L  +
Sbjct: 11  LPCQVRAEPDICSSDYDGVILVSG-CPPGTNEPEPFKTVLYAAAQIDAGLGVLGAVLPIN 69

Query: 69  LPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVT 128
           LPA R +Y+PTG +  +Y DVRS+ EAA++G+ RAL+AG+ +PLL L  D  F   E+VT
Sbjct: 70  LPAKRLIYSPTGTINMDYHDVRSFGEAAEQGMKRALQAGVRQPLLVLLPDERFENVEMVT 129

Query: 129 LLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDI 188
           LLG +E LY  L+ RE  PE   K   LG+W P +    L+S+V  A  LES R++ARDI
Sbjct: 130 LLGCLEALYVPLEVREICPERCCKAYHLGVWGP-ICSKKLQSIVKLALALESGRFIARDI 188

Query: 189 G--------------------------------GTDPERMAPPVINQ 203
           G                                G DPERMAPP + +
Sbjct: 189 GKFRSPSTTTTTTTTTITTSEYISTHGWYFISSGADPERMAPPRVEE 235

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|392883250|gb|AFM90457.1| Dipeptidase B-like protein [Callorhinchus milii]

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 127/205 (61%), Gaps = 12/205 (5%)

Query: 3   LPPGQNLPYEVKTATSLESS-DYDGIVLVSNKVPEDAAYPQPIIKL---LQEQSKIDKGF 58
           +PPG +   EV   T L+S   +DG+VLV++ V +    P+ +  L   L +   ID   
Sbjct: 2   VPPGVHRIPEVVFTTQLQSKLSFDGVVLVTDSVEK---LPRDLESLKAPLSQYKSIDLAA 58

Query: 59  NDDITLLHSSL-PASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPS 117
             ++ L+H+++ P +R ++APTG + ++YDDVR Y +AA  GI RALKAG+ KPLL    
Sbjct: 59  EKEVVLIHAAVFPGARLIFAPTGPLNRDYDDVRRYGDAAVSGIKRALKAGMVKPLLVCCP 118

Query: 118 DPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIW-SPKLDGAGLESVVSAAT 176
           DP F ++ +VTLLGA+   YT L+ RE  PE   KV  LG+W S + +G   + +V  A 
Sbjct: 119 DPAFKEAALVTLLGALHATYTPLEVREAFPEKSTKVDQLGVWASSEAEG---KKLVQLAM 175

Query: 177 TLESARWVARDIGGTDPERMAPPVI 201
            LES R V RDIGG+DPERMAPP +
Sbjct: 176 ALESGRAVCRDIGGSDPERMAPPKV 200

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387913982|gb|AFK10600.1| transcobalamin 2 [Callorhinchus milii]

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 127/205 (61%), Gaps = 12/205 (5%)

Query: 3   LPPGQNLPYEVKTATSLESS-DYDGIVLVSNKVPEDAAYPQPIIKL---LQEQSKIDKGF 58
           +PPG +   EV   T L+S   +DG+VLV++ V +    P+ +  L   L +   ID   
Sbjct: 2   VPPGVHRIPEVVFTTQLQSKLSFDGVVLVTDSVEK---LPRDLESLKAPLSQYKSIDLAA 58

Query: 59  NDDITLLHSSL-PASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPS 117
             ++ L+H+++ P +R ++APTG + ++YDDVR Y +AA  GI RALKAG+ KPLL    
Sbjct: 59  EKEVVLIHAAVFPGARLIFAPTGPLNRDYDDVRRYGDAAVSGIKRALKAGMVKPLLVCCP 118

Query: 118 DPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIW-SPKLDGAGLESVVSAAT 176
           DP F ++ +VTLLGA+   YT L+ RE  PE   KV  LG+W S + +G   + +V  A 
Sbjct: 119 DPAFKEAALVTLLGALHATYTPLEVREAFPEKSTKVDQLGVWASSEAEG---KKLVQLAM 175

Query: 177 TLESARWVARDIGGTDPERMAPPVI 201
            LES R V RDIGG+DPERMAPP +
Sbjct: 176 ALESGRAVCRDIGGSDPERMAPPKV 200

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
ZFIN|ZDB-GENE-090312-55	525	zgc:152830 "zgc:152830" [Danio	0.896	0.346	0.4	1.8e-29
FB|FBgn0000454	508	Dip-B "Dipeptidase B" [Drosoph	0.768	0.307	0.412	1e-24
WB|WBGene00002250	522	lap-2 [Caenorhabditis elegans	0.916	0.356	0.37	3.8e-22
TIGR_CMR|SO_1117	517	SO_1117 "cytosol aminopeptidas	0.891	0.350	0.314	7.3e-15

ZFIN|ZDB-GENE-090312-55 zgc:152830 "zgc:152830" [Danio rerio (taxid:7955)]

 Score = 330 (121.2 bits), Expect = 1.8e-29, P = 1.8e-29
 Identities = 76/190 (40%), Positives = 111/190 (58%)

Query:    13 VKTATSLESSDYDGIVLVSNKVPEDAAYPQPIIKL-LQEQSKIDKGFNDDITLLH-SSLP 70
             ++  T  +  ++DGI+L++    E        +K  LQ+ S +D    D++ +L    LP
Sbjct:    21 IQFTTDCKDQNFDGIILITQNY-EQLPNELECLKAPLQDYSAVDCCIKDEVVVLRVPGLP 79

Query:    71 ASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLL 130
              +R V + TG + ++YDDVR + +AA  GI RALKAG+ +PLL  P + ++ K+ +V +L
Sbjct:    80 GNRLVCSCTGPVNRDYDDVRRFRDAAANGIKRALKAGLQRPLLVCPPNSSYAKNTLVAVL 139

Query:   131 GAMEGLYTNLQYREFKPEIFPKVKVLGIW-SPKLDGAGLESVVSAATTLESARWVARDIG 189
             GA+  LY  L+ RE K     KV  LGIW   K  G G   ++  A  LES R+V RDIG
Sbjct:   140 GALHVLYVPLEVREHKSSPH-KVATLGIWVKNKEQGDG---IIELANALESGRFVYRDIG 195

Query:   190 GTDPERMAPP 199
             G+DPERMA P
Sbjct:   196 GSDPERMAAP 205

GO:0019538 "protein metabolic process" evidence=IEA

GO:0004177 "aminopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008235 "metalloexopeptidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0000454 Dip-B "Dipeptidase B" [Drosophila melanogaster (taxid:7227)]

 Score = 287 (106.1 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 66/160 (41%), Positives = 89/160 (55%)

Query:    39 AYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYDDVRSYAEAAKK 98
             A P  +    +E  K DK F+  I+           VYAP   +T +YDDVRSY EAAK+
Sbjct:    32 AVPNELKATFEEHRKFDKSFDSSISCFKVPNVDQPVVYAPVSELT-DYDDVRSYQEAAKR 90

Query:    99 GIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGI 158
              + + LKAG   PLL +P    FP+ E+ T+LGA+E LY  +Q RE      P+V  L +
Sbjct:    91 SMEKVLKAGFHTPLLFVPKVKRFPEVELCTVLGALEQLYVPIQLREAGTLKDPRVTTLSV 150

Query:   159 WSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAP 198
                ++D    E++   A  LE+ R+VARDIG  DPERM P
Sbjct:   151 ---QIDDPRAEAIFQEALILEAGRFVARDIGVGDPERMTP 187

GO:0008240 "tripeptidyl-peptidase activity" evidence=IDA

GO:0006508 "proteolysis" evidence=IDA

GO:0008239 "dipeptidyl-peptidase activity" evidence=IDA

GO:0004177 "aminopeptidase activity" evidence=ISS

GO:0008235 "metalloexopeptidase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00002250 lap-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 264 (98.0 bits), Expect = 3.8e-22, P = 3.8e-22
 Identities = 74/200 (37%), Positives = 111/200 (55%)

Query:     9 LPYEVKTATSLESSDYDGIVLVSNK--VPEDAAYPQ--PIIKLLQEQSKIDKG-FND-DI 62
             L  ++  ATS+  + +D +VLV ++  V +  A  Q   I   +    K+  G FN   +
Sbjct:     7 LSTKIVRATSIADAAFDAVVLVGSQDNVQQFGAIQQVSAIAPAVNNFLKLHSGAFNSTSL 66

Query:    63 TLLHSSL-PASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNF 121
               + SS+ P+ R + + TGN++++YDDVR Y  AA+KGI+ AL AG+  PLL    +  F
Sbjct:    67 VQVDSSVVPSGRLILSGTGNVSRDYDDVRRYQAAARKGISMALSAGVKSPLLITLPNSRF 126

Query:   122 PKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWS-PKLD-GAGLESVVSAATTLE 179
             P +E+V  LGA+  +YT L  RE   E   K+  LG+ +    D  A LE +V A    +
Sbjct:   127 PNAELVAALGALTPVYTPLNVRE--EENKQKLNQLGLLAIGNSDTSARLEKLVEA---YD 181

Query:   180 SARWVARDIGGTDPERMAPP 199
             ++  V RD+G   PERMAPP
Sbjct:   182 ASFTVCRDVGEAGPERMAPP 201

GO:0004177 "aminopeptidase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008235 "metalloexopeptidase activity" evidence=IEA

GO:0019538 "protein metabolic process" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

TIGR_CMR|SO_1117 SO_1117 "cytosol aminopeptidase, putative" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 197 (74.4 bits), Expect = 7.3e-15, P = 7.3e-15
 Identities = 60/191 (31%), Positives = 97/191 (50%)

Query:    12 EVKTATSL-ESSDYDGIVLVSNKVPEDAAYPQPIIKLLQEQ-SKIDKGFNDDITLLHS-S 68
             +V+  +++ +   +D +V+V+   P+  A     I LL E  +K+DK   +  TLL +  
Sbjct:     8 DVQAESAIFDGEGWDAVVVVT---PDLGAIGIDEISLLAEHGAKVDKRVGNSPTLLFAPG 64

Query:    69 LPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLL-ALPS-DPNFPKSEV 126
             L   R + AP   +  +Y DVR Y + A+  IA A  AG  +PLL  +PS  P F  +  
Sbjct:    65 LAGGRLIIAPVTQVADDYADVRVYGDVARVAIAIAKDAGAKRPLLYVVPSATPKFGFATE 124

Query:   127 VTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVAR 186
             V  L   + L+  L+ RE    + P  + +G+ S   D +  +        LE+ R +AR
Sbjct:   125 VAALACGQELWQTLELRE-ATGLTPAFEAIGLLSLSADTSSADKS-HLLNALEAGRVLAR 182

Query:   187 DIGGTDPERMA 197
             D+ GT+PERM+
Sbjct:   183 DLCGTEPERMS 193


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.133   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      203       203   0.00092  111 3  11 23  0.41    33
                                                     31  0.46    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  148 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.09u 0.11s 19.20t   Elapsed:  00:00:01
  Total cpu time:  19.09u 0.11s 19.20t   Elapsed:  00:00:01
  Start:  Thu Aug 15 16:48:42 2013   End:  Thu Aug 15 16:48:43 2013

GO:0006508 "proteolysis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	203
cd00433	468	cd00433, Peptidase_M17, Cytosol aminopeptidase fam	3e-13

>gnl|CDD|238247 cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains

 Score = 67.2 bits (165), Expect = 3e-13
 Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 13/164 (7%)

Query: 37  DAAYPQPIIKLLQEQSKIDKGFNDDITLLHSS-LPASRFVYAPTGNMTKEYDDVRSYAEA 95
           DAA    +  LL+      KG   +  LL +    A R      G   +E  DV +  +A
Sbjct: 23  DAASSGALAALLKA--SGFKGKAGETLLLPALGGGAKRVALVGLGK--EEDLDVENLRKA 78

Query: 96  AKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKV 155
           A        K G     + LP+     ++      GA+ G Y   +Y+  K +    V +
Sbjct: 79  AGAAARALKKLGSKSVAVDLPTLAEDAEAAA---EGALLGAYRFDRYKSKKKKTPLLVVL 135

Query: 156 LGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPP 199
                   +    E+ +     +     +ARD+  T    + P 
Sbjct: 136 ELG-----NDKAAEAALERGEAIAEGVNLARDLVNTPANDLTPT 174

Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants. Length = 468

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG2597|consensus	513		99.12
PRK00913	483	multifunctional aminopeptidase A; Provisional	98.83
cd00433	468	Peptidase_M17 Cytosol aminopeptidase family, N-ter	98.64
PTZ00412	569	leucyl aminopeptidase; Provisional	96.8
COG0260	485	PepB Leucyl aminopeptidase [Amino acid transport a	93.85
PF02789	126	Peptidase_M17_N: Cytosol aminopeptidase family, N-	93.23

>KOG2597|consensus

Probab=99.12  E-value=2.3e-11  Score=116.12  Aligned_cols=173  Identities=20%  Similarity=0.248  Sum_probs=142.7

Q ss_pred             CCcEEEEEcCCCCCCCCCChhHHHHHHHHhhhcccCCCceEEEEecCCCCcEEEeccCCCCCCch-hHhhHHHHHHHHHH
Q psy6039          23 DYDGIVLVSNKVPEDAAYPQPIIKLLQEQSKIDKGFNDDITLLHSSLPASRFVYAPTGNMTKEYD-DVRSYAEAAKKGIA  101 (203)
Q Consensus        23 ~~D~vvlV~~~~~~~~~~~~~l~~~~~~~~~iD~~~~~~~~ll~~~~p~~RlI~sPtG~l~rDyD-DVRr~~dAA~~gi~  101 (203)
                      --|+|||-..+.+..  .-+.++..+.+... |+..|+...+++.+++.+++.++.+=.+. |++ |+++|..+++++++
T Consensus        24 ~~~~lvVG~~~~~~~--~~~~~~~~~~~~~d-~~~~g~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~a~vg~gk~~~~   99 (513)
T KOG2597|consen   24 KADGLVVGVYSKEGD--KKSKKKTPAGEKFD-DKLGGKLIELIRESGVDGKLGYGRVLELV-DPEYDVVAVVGLGKEGAG   99 (513)
T ss_pred             cCceEEEEEechhcc--ccccccccchhhcc-cccccchheeeeccCCCCCcceeeEEEec-CCCcceeehhhhhhhhcC
Confidence            368888877765443  24466777777777 88888999999998877778888777666 555 99999999999999


Q ss_pred             HHHHcCCCCceEecCCCCCCCchhHHHHHhhhhhhcccchhhccCCC----------------CccceeEEeeecCCCCC
Q psy6039         102 RALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPE----------------IFPKVKVLGIWSPKLDG  165 (203)
Q Consensus       102 rAlkAG~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLEvRE~~~~----------------~~~k~~~lGl~~~~~~~  165 (203)
                      -..+.+...++..+....++....++.+++..-.+|.|++.||...+                +.....+|.+...  + 
T Consensus       100 ~~~~~~~~e~~~~v~~a~~~~~~al~~~~~~~~~v~s~~~~~e~aa~g~~l~~~~~~~~~~~~~~~~~~~i~~~~~--~-  176 (513)
T KOG2597|consen  100 PNAKEGLDEGMEFVRVAARFGARALVLALGRLVPVYSPMDYAEQAAEGAALALWRYNRNKSKKNRPSLPKIDLYGS--G-  176 (513)
T ss_pred             cchhhhccchhhhhhhhcccchHHHHHhhcceeecccccchHHHhhccccccccccccccccccccccceEEeecC--C-
Confidence            99999999999999999999999999999999999999999998333                2333456667765  3 


Q ss_pred             cchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039         166 AGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ  203 (203)
Q Consensus       166 ~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae  203 (203)
                       +.+...+.+....+|+++||+|+-+.++||.|.+|+|
T Consensus       177 -~~~~~~k~~~~~~~~~~lar~l~d~PaN~Mtp~~fae  213 (513)
T KOG2597|consen  177 -DGEDAWKRGLFKAAAQNLARRLGDTPANRMTPTQFAE  213 (513)
T ss_pred             -cchHHHHHHHHHHHHHHHHHHhccCChhhcCHHHHHH
Confidence             2245788999999999999999999999999999875

>PRK00913 multifunctional aminopeptidase A; Provisional

Probab=98.83  E-value=2.6e-08  Score=95.11  Aligned_cols=178  Identities=18%  Similarity=0.180  Sum_probs=124.7

Q ss_pred             cCCCCCCcEEEEEcCCCCCCCCCChhH----HHHHHHH---hhhcccCCCceEEEEecC-CCCcEEEeccCCCCCCchhH
Q psy6039          18 SLESSDYDGIVLVSNKVPEDAAYPQPI----IKLLQEQ---SKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTKEYDDV   89 (203)
Q Consensus        18 ~l~~~~~D~vvlV~~~~~~~~~~~~~l----~~~~~~~---~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~rDyDDV   89 (203)
                      ++.+...|+||+-..  ..+......+    ...++..   ..++...++...+...++ +.+|++|...|+- .+++. 
T Consensus         9 ~~~~~~~~~~vv~~~--~~~~~~~~~ld~~~~g~l~~~~~~~~f~gk~ge~~~l~~~~g~~~~~vi~vGlG~~-~~~~~-   84 (483)
T PRK00913          9 SPEKQKSDCLVVGVP--ERLSPAAEQLDKASDGYLSALLKRGDFKGKAGETLLLHAVPGVLAERVLLVGLGKE-EELDE-   84 (483)
T ss_pred             CcccccCCEEEEEec--cccchhHHHHhhhhhHHHHHHHHhCCCCCCCCCEEEEecCCCCccceEEEEEeCCc-ccCCH-
Confidence            445556688888653  1221111111    1222222   346666666666666666 8899999999983 36654 


Q ss_pred             hhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCchhHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCC-Ccch
Q psy6039          90 RSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLD-GAGL  168 (203)
Q Consensus        90 Rr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~-~~~~  168 (203)
                      +.+..|+.++++.+.+.+++...+.++... .......++.|++.++|..-+.|... ++...+.++.++..  + ..+.
T Consensus        85 ~~~r~a~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~eg~~l~~y~f~~~k~~~-~~~~~~~~~~~~~~--~~~~~~  160 (483)
T PRK00913         85 EQLRKAAGKAARALKKTKVKEAVIFLTELH-TYWKARAAAEGALLGLYRFDKYKSKK-EPRRPLEKLVFLVP--TRLTEA  160 (483)
T ss_pred             HHHHHHHHHHHHHhhhcCceEEEEecCccC-cHHHHHHHHHHHHHcCccccccCCCC-cccCCccEEEEEcC--CcchHH
Confidence            788889999999998999888877655322 33445678899999999999988752 22335778888764  3 1234


Q ss_pred             HHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039         169 ESVVSAATTLESARWVARDIGGTDPERMAPPVINQ  203 (203)
Q Consensus       169 ~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae  203 (203)
                      +..++.+.++..|...|||+..+-|.+|.|..|||
T Consensus       161 ~~~~~~~~~~a~~~~~aRdL~n~P~n~~tP~~~a~  195 (483)
T PRK00913        161 EKAIAHGEAIAEGVNLARDLVNEPPNILTPAYLAE  195 (483)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCChhhcCHHHHHH
Confidence            56789999999999999999999999999988764

>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains

Probab=98.64  E-value=2.9e-07  Score=87.53  Aligned_cols=146  Identities=19%  Similarity=0.199  Sum_probs=103.4

Q ss_pred             HHHHhhhcccCC--CceEEEEecC-CCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCch
Q psy6039          48 LQEQSKIDKGFN--DDITLLHSSL-PASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKS  124 (203)
Q Consensus        48 ~~~~~~iD~~~~--~~~~ll~~~~-p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a  124 (203)
                      +++..+.....+  .+...++... +.+|+++.++|+.+  +.+.+++.+|+.++++++.+.+...-.+..+.   +...
T Consensus        30 l~~~~~~~~~~g~~g~~~~l~~~~~~~~~~~~vglg~~~--~~~~~~~r~a~~~~~~~~~~~~~~~~~~~~~~---~~~~  104 (468)
T cd00433          30 LAALLKASGFKGKAGETLLLPALGGGAKRVALVGLGKEE--DLDVENLRKAAGAAARALKKLGSKSVAVDLPT---LAED  104 (468)
T ss_pred             HHHHHHhcCCCCCCCcEEEEccCCCCccEEEEEEeCCch--hcCHHHHHHHHHHHHHHhhhcCceEEEEecCc---chHH
Confidence            455555444433  3444455443 67999999999754  68999999999999999999885543333221   2445


Q ss_pred             hHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCCCcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039         125 EVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ  203 (203)
Q Consensus       125 ~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae  203 (203)
                      ...++.|++.+.|..-..|......  +.... +...  .....+..++.+.++.+|..+|||++.+-|++|.|..+|+
T Consensus       105 ~~~~~~g~~l~~y~~~~~k~~~~~~--~~~~~-~~~~--~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~n~~tP~~~a~  178 (468)
T cd00433         105 AEAAAEGALLGAYRFDRYKSKKKKT--PLLVV-LELG--NDKAAEAALERGEAIAEGVNLARDLVNTPANDLTPTYLAE  178 (468)
T ss_pred             HHHHHHHHHHhccccccccCCccCC--CceeE-Eecc--cchhhHHHHHHHHHHHHHHHHHHHhhcCCcccCCHHHHHH
Confidence            6778899999999999998753322  22111 1112  2223456899999999999999999999999999988764

Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.

>PTZ00412 leucyl aminopeptidase; Provisional

Probab=96.80  E-value=0.0068  Score=59.49  Aligned_cols=126  Identities=18%  Similarity=0.193  Sum_probs=90.5

Q ss_pred             CCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceE-ecCCC-C----CC------C--chhHHHHHhhhhh
Q psy6039          70 PASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLL-ALPSD-P----NF------P--KSEVVTLLGAMEG  135 (203)
Q Consensus        70 p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLL-v~~~~-~----~f------~--~a~lva~LGal~a  135 (203)
                      +.+|+++.-.|.-.    +.+.|..|+..+++.+.+.++++-.+ .++.. .    .|      .  +....++.|++.+
T Consensus        83 ~~~rvllvGlG~~~----t~~~~R~a~a~aar~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~aeGa~lg  158 (569)
T PTZ00412         83 EERRELFAGMGAKP----TVRDYRLAVTAAVREAKKLNASALVLHSLPQDVFSMGDLFQPPSRLPSHDVVEKTAIFAVTA  158 (569)
T ss_pred             CCceEEEEecCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEEeccccccccccccccccccchHHHHHHHHHHHHhc
Confidence            46899999999853    57777788888888888889998777 34421 0    11      1  1246777899999


Q ss_pred             hcccchhhccCCCC--------------ccceeEEeeecCCCCCcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCC
Q psy6039         136 LYTNLQYREFKPEI--------------FPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVI  201 (203)
Q Consensus       136 LYvPLEvRE~~~~~--------------~~k~~~lGl~~~~~~~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprv  201 (203)
                      +|.-=+.+-....+              ..+...+.++..  +  ..+..+..+.++-.|-..|||++.+-|+.|.|..|
T Consensus       159 ~Y~f~~yKs~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~--~--~~~~~~~~g~~ia~~vn~ARdLvn~P~N~ltP~~~  234 (569)
T PTZ00412        159 AYQYDRLKSGAKGGLTRARRAESRAKPPAAPQPPMELVID--S--SNAQAIAAGNIIGHCVNEARNLGNLREDEGVPQFY  234 (569)
T ss_pred             ceechhccCCccccccccccccccccccccCcceEEEecC--c--hHHHHHHHHHHHHHHHHHHHHhccCChhhcCHHHH
Confidence            99987776532211              113556666543  2  23466888899999999999999999999999877


Q ss_pred             CC
Q psy6039         202 NQ  203 (203)
Q Consensus       202 ae  203 (203)
                      ||
T Consensus       235 Ae  236 (569)
T PTZ00412        235 AE  236 (569)
T ss_pred             HH
Confidence            64

>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]

Probab=93.85  E-value=0.67  Score=45.02  Aligned_cols=125  Identities=21%  Similarity=0.235  Sum_probs=85.0

Q ss_pred             CCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCchhHHHHHhhhhhhcccchhhccCCCCc
Q psy6039          71 ASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIF  150 (203)
Q Consensus        71 ~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLEvRE~~~~~~  150 (203)
                      .+|+++...|.-.-+++++|+..-+    +.++++.+-..-+.++.+.-.=....-..++|..+..|.-=..+....+..
T Consensus        66 ~~~~~~vglg~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Y~f~~yk~~k~~~~  141 (485)
T COG0260          66 VKRVLLVGLGKRKLSEDTLRRAAGA----AARALKKGKAWEVTLLLPELPAAEIAAAAVEGFLLGSYRFDRYKSEKKEPD  141 (485)
T ss_pred             cceEEEEeecCCcCCHHHHHHHHHH----HHHHhhcCCceEEEEeccccchHHHHHHHHHHHHhcccchhhccccccccc
Confidence            4899999999987678888876543    455666666555555443221112235567899999995444444432222


Q ss_pred             cceeEEeeecCCCCCcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCC
Q psy6039         151 PKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVIN  202 (203)
Q Consensus       151 ~k~~~lGl~~~~~~~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprva  202 (203)
                      .+...+-+...  .. ..+..++.+.++-+|-..|||+..+=|+-|.|-.+|
T Consensus       142 ~~~~~v~~~~~--~~-~~~~~~~~~~ai~~~v~~aRdLvN~P~n~l~P~~la  190 (485)
T COG0260         142 KELPKVTLLVP--AK-SAEKAIREGEAIAEGVNLARDLVNTPANILTPEELA  190 (485)
T ss_pred             cccceEEEecc--ch-hhHHHHHHHHHHHHHHHHHHHHhhCCcccCCHHHHH
Confidence            23667777766  32 334578889999999999999999999999986554

>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.23  E-value=0.9  Score=34.33  Aligned_cols=85  Identities=18%  Similarity=0.171  Sum_probs=54.6

Q ss_pred             hhhcccCCCceEEEEecC-CCCcEEEeccCCCCC-CchhHhhHHHHHHHHHHHHHHcCCCCceEecC-CCCCCCchhHHH
Q psy6039          52 SKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTK-EYDDVRSYAEAAKKGIARALKAGITKPLLALP-SDPNFPKSEVVT  128 (203)
Q Consensus        52 ~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~r-DyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~-~~~~f~~a~lva  128 (203)
                      ..+....|+...+...++ ..+|+|+...|.-+. +.   +.+..|+.++++.+.+.+++.=.+.++ +...-......+
T Consensus        32 ~~f~gk~ge~~~l~~~~~~~~~~v~lvGlG~~~~~~~---~~~r~a~~~~~~~l~~~~~~~v~i~l~~~~~~~~~~~~~~  108 (126)
T PF02789_consen   32 GDFKGKAGETLLLPGPGGIKAKRVLLVGLGKKEKLTA---ESLRKAGAAAARALKKLKVKSVAIDLPIDGENSDEAAEAA  108 (126)
T ss_dssp             TSS--STT-EEEEEEETTTSCSEEEEEEEESCTGBCH---HHHHHHHHHHHHHHHHTT-SEEEEEGCSSBTTCHHHHHHH
T ss_pred             CCCCCCCCcEEEEecCCCCCccEEEEEECCCcCcCCH---HHHHHHHHHHHHHHhhCCceEEEEeCcccccCcHHHHHHH
Confidence            444445555555555555 689999999999872 44   445556667777777788888888887 222222666788


Q ss_pred             HHhhhhhhccc
Q psy6039         129 LLGAMEGLYTN  139 (203)
Q Consensus       129 ~LGal~aLYvP  139 (203)
                      +.|++.+.|.=
T Consensus       109 ~~g~~l~~Y~f  119 (126)
T PF02789_consen  109 AEGALLGSYRF  119 (126)
T ss_dssp             HHHHHHHT---
T ss_pred             HHHHHHcCccC
Confidence            89999999964

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
3h8g_F	497	Cytosol aminopeptidase; hydrolase, manganese, meta	4e-05
1gyt_A	503	Cytosol aminopeptidase; hydrolase, DNA recombinati	2e-04
3kr4_A	528	M17 leucyl aminopeptidase; protease, hydrolase; HE	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A* Length = 497

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 10/150 (6%)

Query: 56  KGFNDDITLLH--SSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLL 113
            G      LL     L A R +   +G    E    R++ +                 +L
Sbjct: 53  AGKPGQTLLLQNLQGLKAERVLLVGSGK--DEALGDRTWRKLVASVAGVLKGLNGADAVL 110

Query: 114 ALPSDPNFPKSEVVTLL-----GAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGL 168
           AL       +              ++G Y   +++  +      +K + + + K   A +
Sbjct: 111 ALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKS-QKVEPRALKKVTLLADKAGQAEV 169

Query: 169 ESVVSAATTLESARWVARDIGGTDPERMAP 198
           E  V  A+ + +     RD+G   P    P
Sbjct: 170 ERAVKHASAIATGMAFTRDLGNLPPNLCHP 199

>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1 Length = 503

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 9/145 (6%)

Query: 61  DITLLH--SSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSD 118
              LLH   ++ + R +    G   +   D R Y +  +K I      G  + +  L   
Sbjct: 58  QTLLLHHVPNVLSERILLIGCGK--ERELDERQYKQVIQKTINTLNDTGSMEAVCFLTEL 115

Query: 119 PNFPKSEV----VTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSP-KLDGAGLESVVS 173
               ++        +  A E LY+  Q +  K E    ++ +    P + +    E  + 
Sbjct: 116 HVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQ 175

Query: 174 AATTLESARWVARDIGGTDPERMAP 198
               + +    A+D+G   P     
Sbjct: 176 HGLAIAAGIKAAKDLGNMPPNICNA 200

>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* 3t8w_A* Length = 528

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 17/207 (8%), Positives = 53/207 (25%), Gaps = 18/207 (8%)

Query: 5   PGQNLPYEVKTATSLESSDYDGIVLVSNKVPE--------DAAYPQPIIKLLQEQSKID- 55
           P  ++  +V       + +    + + N   +             + + + L++++    
Sbjct: 23  PIHDIKVQVYDIKGGCNVEEGLTIFLVNNPGKENGPVKISSKVNDKQVSEFLKDENMEKF 82

Query: 56  KGFNDDITLLH---SSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPL 112
                     +    +  +    Y   G+                  +       ++K  
Sbjct: 83  NVKLGTSKHFYMFNDNKNSVAVGYVGCGS--VADLSEADMKRVVLSLVTMLHDNKLSKLT 140

Query: 113 LALPSDPNFPKSEVVTLLGAMEGLYTNLQYR-EFKPEIFPKVKVLGIWSPKLDGAGLESV 171
           +    + +        L        T+ +++   K      +K LG++    +    +  
Sbjct: 141 VVFEINVDKNLFRFF-LETLFYEYMTDERFKSTDKNVNMEYIKHLGVYIN--NADTYKEE 197

Query: 172 VSAATTLESARWVARDIGGTDPERMAP 198
           V  A       + A  +         P
Sbjct: 198 VEKARVYYFGTYYASQLIAAPSNYCNP 224

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 53/173 (30%)

Query: 41  PQPIIKLLQE-QSKIDKGFN------DDITLLHSSLPA--SRFVYAPTGNMTKEY----- 86
           P+ ++++LQ+   +ID  +        +I L   S+ A   R +       +K Y     
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL------KSKPYENCLL 248

Query: 87  --DDVRSYAEAAK--------------KGIARALKAGITKPLLALPSDPNFPKSEVVTLL 130
              +V++ A+A                K +   L A  T  +            EV +LL
Sbjct: 249 VLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 131 GAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARW 183
                 Y + + ++   E      VL   +P+       S+++ +     A W
Sbjct: 308 ----LKYLDCRPQDLPRE------VLTT-NPR-----RLSIIAESIRDGLATW 344

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
1gyt_A	503	Cytosol aminopeptidase; hydrolase, DNA recombinati	99.12
3h8g_F	497	Cytosol aminopeptidase; hydrolase, manganese, meta	99.09
3jru_B	490	Probable cytosol aminopeptidase; bacterial blight,	99.02
3pei_A	486	Cytosol aminopeptidase; structural genomics, cente	98.76
1lam_A	484	Leucine aminopeptidase; exopeptidase, metallopepti	98.68
3kzw_A	515	Cytosol aminopeptidase; hydrolase, manganese bindi	97.73
3kr4_A	528	M17 leucyl aminopeptidase; protease, hydrolase; HE	97.19
2hc9_A	491	Leucine aminopeptidase 1; carbonate, structural ge	90.27

>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1

Probab=99.12  E-value=2.7e-10  Score=107.56  Aligned_cols=150  Identities=17%  Similarity=0.168  Sum_probs=114.8

Q ss_pred             HHhhhcccCCCceEEEEecC-CCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCC--CCCC--Cch
Q psy6039          50 EQSKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPS--DPNF--PKS  124 (203)
Q Consensus        50 ~~~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~--~~~f--~~a  124 (203)
                      ....++.+.|+...+...++ +.+|+++..+|+.+ +| |.++|..|+.++++.+.+.|++.+.+.++.  ...+  ...
T Consensus        48 ~~~~f~gk~g~~~~~~~~~~~~~~~v~lvGlG~~~-~~-~~~~~r~a~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~  125 (503)
T 1gyt_A           48 RRGELEGKPGQTLLLHHVPNVLSERILLIGCGKER-EL-DERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWK  125 (503)
T ss_dssp             HHTSCCCCTTCEEEEESCTTCSSSEEEEEECCSTT-CC-CHHHHHHHHHHHHHHHHHSCCSEEEECGGGSCBTTBCHHHH
T ss_pred             HhCCCCCCCCCEEEEcCCCCCCccEEEEEEcCchh-hc-CHHHHHHHHHHHHHHHHhcCCceEEEEcccccccccccHHH
Confidence            34556667776555554566 78999999999887 44 578888999999999999999999887763  1222  123


Q ss_pred             hHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCCC---cchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCC
Q psy6039         125 EVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDG---AGLESVVSAATTLESARWVARDIGGTDPERMAPPVI  201 (203)
Q Consensus       125 ~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~~---~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprv  201 (203)
                      ...+++|++.++|+.-+.|+...++..++..+.++..  +.   ...+..++.+.++.+|..+|||++.+.|++|.|..+
T Consensus       126 ~~~~a~g~~l~~Y~f~~~k~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~a~~~~laRdL~n~P~N~~tP~~l  203 (503)
T 1gyt_A          126 VRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVP--TRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYL  203 (503)
T ss_dssp             HHHHHHHHHHHHCCCCTTCSSCCCCCCCCCEEEEECS--SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSHHHH
T ss_pred             HHHHHHHHHHhCccccccccccccccccccEEEEEec--CccchHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCHHHH
Confidence            4678899999999999998764333345788888875  31   123456788999999999999999999999999877


Q ss_pred             CC
Q psy6039         202 NQ  203 (203)
Q Consensus       202 ae  203 (203)
                      |+
T Consensus       204 A~  205 (503)
T 1gyt_A          204 AS  205 (503)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A*

Probab=99.09  E-value=1.2e-10  Score=109.83  Aligned_cols=182  Identities=14%  Similarity=0.133  Sum_probs=125.5

Q ss_pred             ccCCCCCCcEEEEEcCCCCCCCCCChhHHH----HHH---HHhhhcccCCCceEEEEecC-CCCcEEEeccCCCCCCchh
Q psy6039          17 TSLESSDYDGIVLVSNKVPEDAAYPQPIIK----LLQ---EQSKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTKEYDD   88 (203)
Q Consensus        17 ~~l~~~~~D~vvlV~~~~~~~~~~~~~l~~----~~~---~~~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~rDyDD   88 (203)
                      ..+.+...|++||-......+....+.+..    .+.   ....+.-..|+...+...++ +.+|+++..+|+.+ + .|
T Consensus         8 ~~~~~~~~d~lvv~v~~~~~l~~~~~~ld~~~~g~l~~~~~~~~f~gk~G~~~~l~~~~~~~~~rv~lvGlG~~~-~-~~   85 (497)
T 3h8g_F            8 VAAASVKTATLVIPVGENRKLGAVAKAVDLASEGAISAVLKRGDLAGKPGQTLLLQNLQGLKAERVLLVGSGKDE-A-LG   85 (497)
T ss_dssp             SCGGGCCBSCEEEEEEGGGCCCHHHHHHHHHTTTHHHHHHHTCCCCCCTTCEEEECCCTTCSBSCEEEEEEESSS-C-BC
T ss_pred             CChhhccCCEEEEEEecCCccchHHHHHhHHHHHHHHHHHHhCCCCCCCCCEEEEcCCCCCCccEEEEEECCCcc-c-CC
Confidence            345556678888755432222111111111    111   11334444555544444555 78899999999876 3 46


Q ss_pred             HhhHHHHHHHHHHHHHHcCCCCceEecCCC----CCC-CchhHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCC
Q psy6039          89 VRSYAEAAKKGIARALKAGITKPLLALPSD----PNF-PKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKL  163 (203)
Q Consensus        89 VRr~~dAA~~gi~rAlkAG~k~PLLv~~~~----~~f-~~a~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~  163 (203)
                      .++|..|+.++++.+.+.|++++.+.++..    ..+ ......+++|++.++|+.-+.|+...+ ..++.+|.++..  
T Consensus        86 ~~~~r~a~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~aeG~~l~~Y~f~~yks~~~~-~~~l~~l~l~~~--  162 (497)
T 3h8g_F           86 DRTWRKLVASVAGVLKGLNGADAVLALDDVAVNNRDAHYGKYRLLAETLLDGEYVFDRFKSQKVE-PRALKKVTLLAD--  162 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSEEEECCTTCCBTTSCTTTHHHHHHHHHHHHTTCCCCTTCSSCCC-CCSCCEEEEECC--
T ss_pred             HHHHHHHHHHHHHHHhhCCCceEEEecccccccccchhhHHHHHHHHHHHhcCccccccccCccC-CCcccEEEEEcC--
Confidence            788999999999999999999999988642    122 223466899999999999999986433 346788888765  


Q ss_pred             CC--cchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039         164 DG--AGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ  203 (203)
Q Consensus       164 ~~--~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae  203 (203)
                      +.  ...+..++.+.++.+|..+|||++.+.|+.|.|..+|+
T Consensus       163 ~~~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~n~~~P~~~a~  204 (497)
T 3h8g_F          163 KAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPSFLAE  204 (497)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHH
Confidence            32  12345688899999999999999999999999987763

>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV}

Probab=99.02  E-value=7.6e-10  Score=104.30  Aligned_cols=179  Identities=15%  Similarity=0.105  Sum_probs=126.3

Q ss_pred             ccCCCCCCcEEEEEcCCCCCCCCCChhHHH----HH---HHHhhhcccCCCceEEEEecC-CCCcEEEeccCCCCCCchh
Q psy6039          17 TSLESSDYDGIVLVSNKVPEDAAYPQPIIK----LL---QEQSKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTKEYDD   88 (203)
Q Consensus        17 ~~l~~~~~D~vvlV~~~~~~~~~~~~~l~~----~~---~~~~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~rDyDD   88 (203)
                      ....+...|+|||-......+....+.+..    .+   -....+..+.|+...+...++ +.+|+++...|+-+ +| |
T Consensus        10 ~~~~~~~~d~lvv~v~~~~~l~~~~~~ld~~~~g~l~~~~~~~~f~gk~G~~~~l~~~~~~~~~~v~lvGlG~~~-~~-~   87 (490)
T 3jru_B           10 DAPASAAVDCIVVGAFADKTLSPAAQALDSASQGRLTALLARGDVAGKTGSTTLLHDLPGVAAPRVLVVGLGDAG-KF-G   87 (490)
T ss_dssp             CCTTTCCSSEEEEEECTTSCBCHHHHHHHHHTTSHHHHHHHHTCSCCSTTCEEEEECCTTCSSSEEEEEECCCGG-GC-S
T ss_pred             CCcccccCCEEEEEEeCCCccchhHHHHhHHHHHHHHHHHHhCCCCCCCCCEEEEccCCCCCccEEEEEecCCcc-cC-C
Confidence            456667789998866533222111111111    11   122345555565555554556 78999999999876 45 4


Q ss_pred             HhhHHHHHHHHHHHHHHcCCCCceEecCCCC----CCCchhHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCC
Q psy6039          89 VRSYAEAAKKGIARALKAGITKPLLALPSDP----NFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLD  164 (203)
Q Consensus        89 VRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~----~f~~a~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~  164 (203)
                      .+.|..|+.++++...+.|++++.+.++...    .+......+++|++.++|+.-+.|....++..++++|.++..  +
T Consensus        88 ~~~~r~a~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aeg~~l~~Y~f~~yks~~~~~~~~l~~l~l~~~--~  165 (490)
T 3jru_B           88 VAPYLKAIGDATRALKTGAVGTALLTLTELTVKARDAAWNIRQAVTVSDHAAYRYTATLGKKKVDETGLTTLAIAGD--D  165 (490)
T ss_dssp             HHHHHHHHHHHHHHHSSSSCSEEEECGGGSCCTTCCHHHHHHHHHHHHHHHHCCCCTTCSSCCCCCCSCCEEEEEBC--C
T ss_pred             HHHHHHHHHHHHHHHhhCCCceEEEECcccccccccHHHHHHHHHHHHHhcccchhhhccCCccccCCccEEEEecC--C
Confidence            7889999999998888889999988876311    222345678899999999999999875434556888888865  3


Q ss_pred             CcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039         165 GAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ  203 (203)
Q Consensus       165 ~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae  203 (203)
                      .    ..++.+.++.+|..+|||++.+.|+.|.|..+|+
T Consensus       166 ~----~~~~~~~~~a~~~~~aRdL~n~P~n~~~P~~~a~  200 (490)
T 3jru_B          166 A----RALAVGVATAEGVEFARELGNLPPNYCTPAYLAD  200 (490)
T ss_dssp             H----HHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred             H----HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHH
Confidence            2    4578889999999999999999999999987763

>3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp}

Probab=98.76  E-value=7.6e-09  Score=97.44  Aligned_cols=131  Identities=9%  Similarity=-0.004  Sum_probs=100.2

Q ss_pred             ecCCCCcEEEeccCCCCCCchhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCC-C--CchhHHHHHhhhhhhcccchhh
Q psy6039          67 SSLPASRFVYAPTGNMTKEYDDVRSYAEAAKKGIARALKAGITKPLLALPSDPN-F--PKSEVVTLLGAMEGLYTNLQYR  143 (203)
Q Consensus        67 ~~~p~~RlI~sPtG~l~rDyDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~-f--~~a~lva~LGal~aLYvPLEvR  143 (203)
                      .+.+.+|+++...|+-+  ..|.+.|..|+.++++.+.+.|+++..+.++.... .  ......+++|++.+.|..-..|
T Consensus        55 l~~~~~~v~lvGlG~~~--~~~~~~~r~a~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~aeG~~l~~Y~f~~yk  132 (486)
T 3pei_A           55 LLHGDKIVILLGLGLRQ--DFIASEYDKIIAKAAEQLKKLAIKEISVDIDYAFENDNVKQFTLDTVRALISETYVFDQLK  132 (486)
T ss_dssp             ECCSSSEEEEEECCCGG--GCCGGGHHHHHHHHHHHHHHTTCCEEEEECTTSCSSSCHHHHHHHHHHHHHHHTCCCCTTC
T ss_pred             EeCCCCeEEEEEcCCcc--cCCHHHHHHHHHHHHHHHhhcCceEEEEEecccccccchHHHHHHHHHHHHHcCccccccc
Confidence            44434999999999853  44678899999999999999999999988764211 1  1123456789999999999988


Q ss_pred             ccCCCCccceeEEeeecCCCCCcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039         144 EFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ  203 (203)
Q Consensus       144 E~~~~~~~k~~~lGl~~~~~~~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae  203 (203)
                      ...  +..++.++.++..  +..+.+..++.+.++.+|..+|||++.+.|+.|.|..+|+
T Consensus       133 s~~--~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~aRdL~n~P~n~~~P~~~a~  188 (486)
T 3pei_A          133 TEK--ENYSLEQIELVYS--GDQDIEDSAKIGSAIACGQNYAKDLQNLPANICTTDYMLN  188 (486)
T ss_dssp             SSC--CCCCCCEEEEECC--SSSCCHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred             CCC--CCCcccEEEEecC--ChHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCHHHHHH
Confidence            764  2346777887733  2223456788999999999999999999999999987763

>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A*

Probab=98.68  E-value=6.9e-08  Score=90.89  Aligned_cols=134  Identities=14%  Similarity=0.121  Sum_probs=97.3

Q ss_pred             hcccCCCceEEEEec-CCCCcEEEeccCCCCCCchhHh-------hHHHHHHHHHHHHHHcCCCCceEecCCCCCCCchh
Q psy6039          54 IDKGFNDDITLLHSS-LPASRFVYAPTGNMTKEYDDVR-------SYAEAAKKGIARALKAGITKPLLALPSDPNFPKSE  125 (203)
Q Consensus        54 iD~~~~~~~~ll~~~-~p~~RlI~sPtG~l~rDyDDVR-------r~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a~  125 (203)
                      +....|+ +.+++.+ +..+|+++...|+-+.+|+|+|       ++..|+.++++...+.|++.  +.+..   + ...
T Consensus        44 f~gk~g~-~~~~~~~~~~~~~v~lvGlG~~~~~~~~~~~~~~~~~~~r~a~~~~~~~l~~~~~~~--~~~~~---~-~~~  116 (484)
T 1lam_A           44 PPLKAGK-TRTFYGLHEDFPSVVVVGLGKKTAGIDEQENWHEGKENIRAAVAAGCRQIQDLEIPS--VEVDP---C-GDA  116 (484)
T ss_dssp             SCCCTTC-EEEEEEEETTEEEEEEEECCCTTCCEETTTTEEHHHHHHHHHHHHHHHHHHHTTCSE--EEECC---T-TCH
T ss_pred             CCCCCCc-EEEEeCCCCCcCEEEEEEeCcchhcccchhccccCHHHHHHHHHHHHHHHhhcCCeE--EEeCC---c-hHH
Confidence            3333444 4445443 3568999999999988887765       67889999998888889874  33321   1 224


Q ss_pred             HHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCCCcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039         126 VVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLESVVSAATTLESARWVARDIGGTDPERMAPPVINQ  203 (203)
Q Consensus       126 lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprvae  203 (203)
                      ..+++|++.++|+.-+.|+...    +...+.++..  .   .+..++.+.++.+|..+|||++.+.|++|.|..+|+
T Consensus       117 ~~~a~G~~l~~Y~f~~~k~~~~----~~~~~~~~~~--~---~~~~~~~~~~~a~~~~laRdLvn~P~N~~tP~~lA~  185 (484)
T 1lam_A          117 QAAAEGAVLGLYEYDDLKQKRK----VVVSAKLHGS--E---DQEAWQRGVLFASGQNLARRLMETPANEMTPTKFAE  185 (484)
T ss_dssp             HHHHHHHHHHHCCCCTTCSSCC----CCCEEEESSS--S---CHHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred             HHHHHHHHHhCcccCccccCCC----CCceEEEecc--h---hHHHHHHHHHHHHHHHHHHHhhCCChhhcCHHHHHH
Confidence            5789999999999988885422    2345666543  2   234578889999999999999999999999987763

>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp}

Probab=97.73  E-value=0.00013  Score=69.32  Aligned_cols=176  Identities=14%  Similarity=0.128  Sum_probs=108.7

Q ss_pred             CCCCCcEEEEEcCCC-CCCC---CCChhHHHH---HHHHhhhcccCCCceEEEEecC-CCCcEEEeccCCCCCCchhHhh
Q psy6039          20 ESSDYDGIVLVSNKV-PEDA---AYPQPIIKL---LQEQSKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTKEYDDVRS   91 (203)
Q Consensus        20 ~~~~~D~vvlV~~~~-~~~~---~~~~~l~~~---~~~~~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~rDyDDVRr   91 (203)
                      .....|++|+-.... ....   ...+.+...   +.+...+....|+..+++...+ ..+||++.-.|... ++ +.+.
T Consensus        33 ~~~~~d~lvig~~~~~~~~~~~~~~Deal~g~L~~l~~~~~F~gk~G~~~~~~~~~~~~~~rvllvGlGk~~-~~-~~~~  110 (515)
T 3kzw_A           33 LSNEINTLIIGIPEHLNQLERISFNHIDITESLERLKHQHIIGSKVGKIYTTAFDVQDQTYRLITVGLGNLK-TR-SYQD  110 (515)
T ss_dssp             CCTTCCEEEEEEESCGGGSCCCEETTEECHHHHHHHHHTTSSCCSBTCEEEEEEEETTEEEEEEEEEEECST-TC-CHHH
T ss_pred             CCCCCCEEEEEEeCCcccccchHHHHHHHHHHHHHHHhcCccCCCCCCeEEEEecCCCCcCEEEEEEcCCcc-cC-CHHH
Confidence            446789998876644 2221   112222223   4444455556677665554434 78999999999865 33 2344


Q ss_pred             HHHHHHHHHHHHHHcCCCCceEecCC--CCCCCchh--HHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCCCcc
Q psy6039          92 YAEAAKKGIARALKAGITKPLLALPS--DPNFPKSE--VVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAG  167 (203)
Q Consensus        92 ~~dAA~~gi~rAlkAG~k~PLLv~~~--~~~f~~a~--lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~~~~  167 (203)
                      |.+|+.+.++.+.+.+++.=.+.++.  ........  ....+|+..+.|.==..|....+  .....|-+...  .  .
T Consensus       111 ~r~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~Y~f~~yks~~~~--~~~~~l~~~~~--~--~  184 (515)
T 3kzw_A          111 MLKIWGHLFQYIKSEHIEDTYLLMDSFISKYDQLSDVLMACGIQSERATYEFDHYKSSKKA--PFKTNLNLISE--S--L  184 (515)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEGGGTCCSSSCHHHHHHHHHHHHHHTTCCCCTTCTTCCC--CCCEEEEEECS--S--C
T ss_pred             HHHHHHHHHHHHhhcCCceEEEEcccccccccCHHHHHHHHHHHHHhCceecccccCCCCC--CcceEEEEcCc--c--h
Confidence            45556666666677788777777653  22222222  34467788899987666644221  12233444322  2  2


Q ss_pred             hH-HHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039         168 LE-SVVSAATTLESARWVARDIGGTDPERMAPPVINQ  203 (203)
Q Consensus       168 ~~-~l~~~a~AlEaGR~vARDIgGsDPERMApprvae  203 (203)
                      .+ ..++.+.++-+|-.+|||++.+-|+.|.|..+|+
T Consensus       185 ~~~~~~~~~~~~a~~~~~aRdL~n~P~n~ltP~~~a~  221 (515)
T 3kzw_A          185 IELDFIHEGISIGQSINLARDFSNMPPNVLTPQTFAE  221 (515)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH
Confidence            22 4578888999999999999999999999987763

>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* 3t8w_A*

Probab=97.19  E-value=0.0034  Score=59.78  Aligned_cols=178  Identities=8%  Similarity=0.071  Sum_probs=105.6

Q ss_pred             CCCCCCcEEEEEcCCCCCCCCCC--------hhHHHHHHHH--hhhcccCCCceEEEEecC---CCCcEEEeccCCCCCC
Q psy6039          19 LESSDYDGIVLVSNKVPEDAAYP--------QPIIKLLQEQ--SKIDKGFNDDITLLHSSL---PASRFVYAPTGNMTKE   85 (203)
Q Consensus        19 l~~~~~D~vvlV~~~~~~~~~~~--------~~l~~~~~~~--~~iD~~~~~~~~ll~~~~---p~~RlI~sPtG~l~rD   85 (203)
                      -|+-.-|.+|+...+...+....        ..|+..++..  ..+.-..|+...+ +.++   ..+||++...|.-. +
T Consensus        37 ~~~~~~~l~Vv~V~e~~~l~G~ak~lD~as~G~Is~llk~G~~~~f~Gk~g~~~~l-~~~~~~~~~~rvllVGlGk~~-~  114 (528)
T 3kr4_A           37 GCNVEEGLTIFLVNNPGKENGPVKISSKVNDKQVSEFLKDENMEKFNVKLGTSKHF-YMFNDNKNSVAVGYVGCGSVA-D  114 (528)
T ss_dssp             CBCCCSSEEEEEECCSSSTTCBCCCCSCBSCHHHHHHTSHHHHTTSBCCTTCEEEE-EEECTTSCEEEEEEEECCSCS-S
T ss_pred             cccCCCCeEEEEecCCcccCccHHHHHHHHHHHHHHHHHcCCcCcceeCCCCEEEE-ecCCCCCCccEEEEEECCCcc-c
Confidence            34445567777655444443211        2333444432  2344445555544 4432   45789999999864 3


Q ss_pred             chhHhhHHHHHHHHHHHHHHcCCCCceEecCCCCCCCchhHHHHHhhhhhhcccchhhccCCC-CccceeEEeeecCCCC
Q psy6039          86 YDDVRSYAEAAKKGIARALKAGITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPE-IFPKVKVLGIWSPKLD  164 (203)
Q Consensus        86 yDDVRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLEvRE~~~~-~~~k~~~lGl~~~~~~  164 (203)
                      + +.+.|..|+.++++...+.+.+.=.+.++... -......++-|++...|.-=..+....+ +..+++.+.++..  +
T Consensus       115 l-~~~~~r~a~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~eg~~l~~y~f~~yks~~~~~~~~~l~~~~~~~~--~  190 (528)
T 3kr4_A          115 L-SEADMKRVVLSLVTMLHDNKLSKLTVVFEINV-DKNLFRFFLETLFYEYMTDERFKSTDKNVNMEYIKHLGVYIN--N  190 (528)
T ss_dssp             C-CHHHHHHHHHHHHHHHTTSCCSEEEEEECSCC-CHHHHHHHHHHHHHHHCCCCTTCSTTCCC-CCCCSEEEEEET--T
T ss_pred             C-CHHHHHHHHHHHHHHHhhcCccEEEEeccCCC-cHHHHHHHHHHHHhhhccccccccCCCcccccCceEEEEEeC--C
Confidence            3 23455566666666666777777444443211 1122234556777777765555433221 1235677777765  3


Q ss_pred             CcchHHHHHHHHHHHhhhHHhhhcCCCCcccCCCCCCC
Q psy6039         165 GAGLESVVSAATTLESARWVARDIGGTDPERMAPPVIN  202 (203)
Q Consensus       165 ~~~~~~l~~~a~AlEaGR~vARDIgGsDPERMApprva  202 (203)
                      ....+..++.+.++-+|-.+|||+..+=|.-|.|-.+|
T Consensus       191 ~~~~~~~~~~~~~~a~~v~laRdLvn~P~N~ltP~~lA  228 (528)
T 3kr4_A          191 ADTYKEEVEKARVYYFGTYYASQLIAAPSNYCNPVSLS  228 (528)
T ss_dssp             GGGTTHHHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCHHHHH
Confidence            33445678899999999999999999999999997665

>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A

Probab=90.27  E-value=0.11  Score=49.03  Aligned_cols=100  Identities=7%  Similarity=-0.131  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHcC--CCCceEecCCCCCCCchhHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCCCcchHH
Q psy6039          93 AEAAKKGIARALKAG--ITKPLLALPSDPNFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLDGAGLES  170 (203)
Q Consensus        93 ~dAA~~gi~rAlkAG--~k~PLLv~~~~~~f~~a~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~~~~~~~  170 (203)
                      .|..++.|+.|...|  .....+++..   +  + .++..|+..+.+.|+--|..... .....++-++..  .. . +.
T Consensus        90 ~~~~~e~vr~a~~~g~~~~~~~v~v~~---~--~-e~~a~~~a~~~~~~~f~~k~~~~-~~~~~~~~~~~~--~~-~-~~  158 (491)
T 2hc9_A           90 AHSIYKELKPINYPEDTKNVHFVLFAE---Y--P-DVLSHVAAIARTFCKFSMKTSGI-RELNVNIDVVCD--KL-T-NE  158 (491)
T ss_dssp             HHHHHHHHTTCCCCTTCCEEEEEEECC---G--G-GHHHHHHHHHTTSCCCCCCSSCC-CCCEEEEEEECT--TC-C-HH
T ss_pred             HHHHHHHHHHHhcccCcCCceEEEEcC---c--h-hHHHHHHHHHHhccchhcccccC-CCCCceeeeccC--cc-c-HH
Confidence            456666777776666  3334444422   2  2 25667776666777655544332 223445666533  11 1 23


Q ss_pred             HHHHHHHHHhhhHHhhhcCCCCcccCCCCCCCC
Q psy6039         171 VVSAATTLESARWVARDIGGTDPERMAPPVINQ  203 (203)
Q Consensus       171 l~~~a~AlEaGR~vARDIgGsDPERMApprvae  203 (203)
                      -++.+.++-+|-..|||+.++.|++|.|..||+
T Consensus       159 ~~~~~~~~a~~~~~aR~L~n~P~n~~tP~~~a~  191 (491)
T 2hc9_A          159 DAVFLTDLSESVRETARLIDTPANILTTDALVD  191 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchhCCHHHHHH
Confidence            456667888888999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1gyta1	178	Leucine aminopeptidase (Aminopeptidase A), N-termi	97.2

>d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase A), N-terminal domain {Escherichia coli, PepA [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Macro domain-like
superfamily: Macro domain-like
family: Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
domain: Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
species: Escherichia coli, PepA [TaxId: 562]

Probab=97.20  E-value=0.0046  Score=46.78  Aligned_cols=158  Identities=17%  Similarity=0.119  Sum_probs=94.0

Q ss_pred             ccCCCCCCcEEEEEcCCCCCCCCCChhH----HHHHHHH---hhhcccCCCceEEEEecC-CCCcEEEeccCCCCCCchh
Q psy6039          17 TSLESSDYDGIVLVSNKVPEDAAYPQPI----IKLLQEQ---SKIDKGFNDDITLLHSSL-PASRFVYAPTGNMTKEYDD   88 (203)
Q Consensus        17 ~~l~~~~~D~vvlV~~~~~~~~~~~~~l----~~~~~~~---~~iD~~~~~~~~ll~~~~-p~~RlI~sPtG~l~rDyDD   88 (203)
                      ........|++||-..+...+......+    ...++..   ..+....|+...+...++ +.+||++.-.|.-. ++ |
T Consensus         8 ~~~~~~~~d~LVv~v~e~~~~~~~~~~ld~~~~~~i~~~~~~~~f~gk~g~~~~l~~~~~~~~~rvllvGlG~~~-~~-~   85 (178)
T d1gyta1           8 GSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKER-EL-D   85 (178)
T ss_dssp             CCGGGCCSSCEEEEEETTTEECHHHHHHHTTSSSHHHHHHHHTSCCCCTTCEEEEESCTTCSSSEEEEEECCSTT-CC-C
T ss_pred             CChhhccCCEEEEEEeCCCcccHHHHHHhHHHHHHHHHHHHccCccccceeEEEEeCCCCCcceEEEEEeeCCcC-Cc-C
Confidence            3455666799887654322221111111    0112222   234444554444444455 88999999999876 33 4


Q ss_pred             HhhHHHHHHHHHHHHHHcCCCCceEecCCCC----CCCchhHHHHHhhhhhhcccchhhccCCCCccceeEEeeecCCCC
Q psy6039          89 VRSYAEAAKKGIARALKAGITKPLLALPSDP----NFPKSEVVTLLGAMEGLYTNLQYREFKPEIFPKVKVLGIWSPKLD  164 (203)
Q Consensus        89 VRr~~dAA~~gi~rAlkAG~k~PLLv~~~~~----~f~~a~lva~LGal~aLYvPLEvRE~~~~~~~k~~~lGl~~~~~~  164 (203)
                      .+.|..|+.++++...+.+++.-.+.++...    .-.......+.|+..+.|.=-+.+....++..+++.|-++..  +
T Consensus        86 ~~~~rk~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~l~~Y~f~~yKskk~~~~~~l~~i~~~~~--~  163 (178)
T d1gyta1          86 ERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVP--T  163 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSEEEECGGGSCBTTBCHHHHHHHHHHHHHHHHCCCCTTCSSCCCCCCCCCEEEEECS--S
T ss_pred             HHHHHHHHHHHHHHhhhccCceEEEEeccccccCCCHHHHHHHHHHHHHhcCccccceecCCCCCCCCccEEEEEcC--C
Confidence            4555566666677777889999888876422    122233567889999999987777654444556889999877  4


Q ss_pred             CcchHHHHHHHHHHHhh
Q psy6039         165 GAGLESVVSAATTLESA  181 (203)
Q Consensus       165 ~~~~~~l~~~a~AlEaG  181 (203)
                      ..+.   ...-.|+..|
T Consensus       164 ~~~~---~~~~~ai~~G  177 (178)
T d1gyta1         164 RREL---TSGERAIQHG  177 (178)
T ss_dssp             GGGH---HHHHHHHHHH
T ss_pred             HHHH---HHHHHHHHhh
Confidence            4222   2222466665