Psyllid ID: psy6052

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
ENGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLGKIVPPTNTDIQSTYV
ccEEEEEEEEEEHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHEEEEHHHHHHHHHHHHHHEEEEEEEEEEccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccc
cccEEEEEEEEEEEccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccccHHHHEEEEEEEEEHHHHEccHEEEEEEEEcccccccccccEEEEEccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccccEEEEEEEc
engtqtnlLNIVVLTHkelsatpinrILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAirfphkcsascsesscYISVLVAYILPIlicapsyfvfsIREIQIWESGKLEALYQLHlsplakennglifSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRkhqlksksgtpcpqskvekRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRCffescyqpygEVMDILALLNGAINFILYCSMSRQFRvtfgqlfkpknvlgkivpptntdiqstyv
engtqtnlLNIVVLTHkelsatpiNRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQAskrkhqlksksgtpcpqskveKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQlfkpknvlgkivpptntdiqstyv
ENGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKcsascsesscyisVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLGKIVPPTNTDIQSTYV
******NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALR****************************TAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLGKIV************
ENGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGAL********************************MLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNV*****************
ENGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQ**********************KRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLGKIVPPTNTDIQSTYV
*NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQL*****************DRTAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLGKIVPPTNTDIQSTYV
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ENGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLGKIVPPTNTDIQSTYV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query323 2.2.26 [Sep-21-2011]
Q11082434 Probable G-protein couple no N/A 0.869 0.647 0.248 1e-11
Q9VZW5 549 FMRFamide receptor OS=Dro no N/A 0.848 0.499 0.234 1e-11
P17124359 Histamine H2 receptor OS= yes N/A 0.777 0.699 0.241 1e-08
Q923Y9332 Trace amine-associated re yes N/A 0.851 0.828 0.240 1e-07
Q923Y8332 Trace amine-associated re yes N/A 0.851 0.828 0.240 9e-07
Q5QD13345 Trace amine-associated re no N/A 0.829 0.776 0.237 9e-07
Q5W8W0345 Trace amine-associated re yes N/A 0.826 0.773 0.237 1e-06
Q96RI8345 Trace amine-associated re yes N/A 0.814 0.762 0.231 3e-06
P97292358 Histamine H2 receptor OS= no N/A 0.752 0.678 0.245 4e-06
Q923Y5345 Trace amine-associated re no N/A 0.829 0.776 0.231 5e-06
>sp|Q11082|YT66_CAEEL Probable G-protein coupled receptor B0563.6 OS=Caenorhabditis elegans GN=B0563.6 PE=2 SV=2 Back     alignment and function desciption
 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 134/306 (43%), Gaps = 25/306 (8%)

Query: 3   GTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRS-----K 57
           G   N+ N++VL  + L A      L  LAV DLL ML  + F    Y     S     K
Sbjct: 38  GIVGNITNLMVLASRRLRAVSY-MYLRALAVADLLCMLFVLVFVSTEYLAKNGSSINQYK 96

Query: 58  LYFTYAGSLFI-LIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISV 116
           LY  Y   L + LI+           ++  + L++ R+++I FP       S      ++
Sbjct: 97  LYQIYQCHLMLTLINWALGA-----GVYVVVALSLERYISIVFPMHFRTWNSPQRATRAI 151

Query: 117 LVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSV 176
           ++A+++P +   P Y +   +  Q ++  +   +Y +   P+        + ++ W    
Sbjct: 152 VIAFLIPAIFYVP-YAITRYKGKQRFDLLQNVTIYSMDDHPIY---TTFYWQIYKWTREA 207

Query: 177 CIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLL 236
            ++ LP ++L+V++  ++ A R+  K   QL +K      Q       D   +ML   +L
Sbjct: 208 ILRFLPIIILTVLNIQIMIAFRKRQKMFQQLTNKRKEQGTQKD-----DTLMYMLGGTVL 262

Query: 237 LFLITEFPQGI-LALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRV 295
           + L+   P  I L L+   L +      YQ +  V +IL + N A  F ++C+ S  +R 
Sbjct: 263 MSLVCNIPAAINLLLIDETLKK---RLDYQIFRAVANILEITNHASQFYVFCACSTDYRT 319

Query: 296 TFGQLF 301
           TF Q F
Sbjct: 320 TFLQKF 325
Not known. Putative receptor.
Caenorhabditis elegans (taxid: 6239)
>sp|Q9VZW5|FMAR_DROME FMRFamide receptor OS=Drosophila melanogaster GN=FR PE=2 SV=1 Back     alignment and function description
>sp|P17124|HRH2_CANFA Histamine H2 receptor OS=Canis familiaris GN=HRH2 PE=1 SV=1 Back     alignment and function description
>sp|Q923Y9|TAAR1_RAT Trace amine-associated receptor 1 OS=Rattus norvegicus GN=Taar1 PE=2 SV=1 Back     alignment and function description
>sp|Q923Y8|TAAR1_MOUSE Trace amine-associated receptor 1 OS=Mus musculus GN=Taar1 PE=2 SV=1 Back     alignment and function description
>sp|Q5QD13|TAAR6_MOUSE Trace amine-associated receptor 6 OS=Mus musculus GN=Taar6 PE=2 SV=1 Back     alignment and function description
>sp|Q5W8W0|TAAR6_PANTR Trace amine-associated receptor 6 OS=Pan troglodytes GN=TAAR6 PE=3 SV=1 Back     alignment and function description
>sp|Q96RI8|TAAR6_HUMAN Trace amine-associated receptor 6 OS=Homo sapiens GN=TAAR6 PE=2 SV=1 Back     alignment and function description
>sp|P97292|HRH2_MOUSE Histamine H2 receptor OS=Mus musculus GN=Hrh2 PE=2 SV=1 Back     alignment and function description
>sp|Q923Y5|TAAR6_RAT Trace amine-associated receptor 6 OS=Rattus norvegicus GN=Taar6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
156542430421 PREDICTED: probable G-protein coupled re 0.990 0.760 0.559 7e-94
242013230 426 class A rhodopsin-like G-protein coupled 0.981 0.744 0.533 8e-92
307184258 447 Probable G-protein coupled receptor B056 0.978 0.706 0.524 1e-91
328781777398 PREDICTED: neuromedin-U receptor 1-like 0.978 0.793 0.555 9e-90
380025083 425 PREDICTED: neuromedin-U receptor 1-like 0.978 0.743 0.558 1e-89
209867500 427 orphan myosuppressin-like receptor [Apis 0.978 0.740 0.555 2e-89
350417471 430 PREDICTED: neuromedin-U receptor 1-like 0.978 0.734 0.555 2e-89
340713726 430 PREDICTED: neuromedin-U receptor 1-like 0.978 0.734 0.555 3e-89
383863701 429 PREDICTED: neuromedin-U receptor 1-like 0.978 0.736 0.546 9e-89
328705213406 PREDICTED: hypothetical protein LOC10057 0.953 0.758 0.492 7e-85
>gi|156542430|ref|XP_001601584.1| PREDICTED: probable G-protein coupled receptor 139-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  350 bits (897), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 184/329 (55%), Positives = 229/329 (69%), Gaps = 9/329 (2%)

Query: 3   GTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTY 62
           GT  NLLN+ VLT KEL   PINRILTGLA  D+LVMLEYVPF+IY Y V +  + +F Y
Sbjct: 94  GTLANLLNVAVLTRKELRRAPINRILTGLAAADVLVMLEYVPFAIYEYIV-LPERRHFPY 152

Query: 63  AGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYIL 122
             ++F+L HMHFSQLLHTISI  TL+LA+ R++A+RFP    + C+ + C +++L + + 
Sbjct: 153 GWAVFVLFHMHFSQLLHTISIALTLSLAVWRYIAVRFPQCSRSWCTPARCRLALLCSLLA 212

Query: 123 PILICAPSYFVFSIREIQIWESGKLEALYQLHLS--PLAKENNGLIFSLHFWMYSVCIKL 180
             L CAPSYFVF IRE ++ E      LY +  S  P + ++ GL++ L+FW+  V +KL
Sbjct: 213 AGLACAPSYFVFGIREQKLMEENGPVVLYHVDASRGPSSDDDRGLLYRLNFWLLGVLVKL 272

Query: 181 LPCLVLSVISYYLIGALRQASKRKHQLKSKSG----TPCPQSKVEKRMDRTAHMLVAVLL 236
           LPC VL+VIS  LI AL +A  R+  L+   G    TP    + E+R DRT  MLVAVLL
Sbjct: 273 LPCFVLTVISCRLIQALYKAKTRRRLLRPLDGQLTDTPATGGRSERRADRTTRMLVAVLL 332

Query: 237 LFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVT 296
           LFLITE PQG+L LLS +LG CFF SCY   GE+MDILAL NGA+NFILYCSMSRQFR T
Sbjct: 333 LFLITEIPQGVLGLLSALLGDCFFRSCYHSLGEIMDILALFNGAVNFILYCSMSRQFRTT 392

Query: 297 FGQLFKPKNVLGKIVPPT--NTDIQSTYV 323
           FG+LFKP  V+GK  P     TDIQSTYV
Sbjct: 393 FGRLFKPSIVVGKWQPACTHQTDIQSTYV 421

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242013230|ref|XP_002427317.1| class A rhodopsin-like G-protein coupled receptor GPRmys, putative [Pediculus humanus corporis] gi|212511662|gb|EEB14579.1| class A rhodopsin-like G-protein coupled receptor GPRmys, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307184258|gb|EFN70731.1| Probable G-protein coupled receptor B0563.6 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328781777|ref|XP_396970.4| PREDICTED: neuromedin-U receptor 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380025083|ref|XP_003696309.1| PREDICTED: neuromedin-U receptor 1-like [Apis florea] Back     alignment and taxonomy information
>gi|209867500|gb|ACI90288.1| orphan myosuppressin-like receptor [Apis mellifera] Back     alignment and taxonomy information
>gi|350417471|ref|XP_003491438.1| PREDICTED: neuromedin-U receptor 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340713726|ref|XP_003395388.1| PREDICTED: neuromedin-U receptor 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383863701|ref|XP_003707318.1| PREDICTED: neuromedin-U receptor 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328705213|ref|XP_003242732.1| PREDICTED: hypothetical protein LOC100572006 [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
FB|FBgn0033579414 CG13229 [Drosophila melanogast 0.919 0.717 0.441 9.4e-66
FB|FBgn0035331478 DmsR-1 "Dromyosuppressin recep 0.281 0.190 0.630 4.7e-63
FB|FBgn0264002488 DmsR-2 "Dromyosuppressin recep 0.315 0.209 0.582 7.9e-60
WB|WBGene00010191 510 dmsr-1 [Caenorhabditis elegans 0.665 0.421 0.281 2.2e-38
WB|WBGene00016428429 dmsr-7 [Caenorhabditis elegans 0.947 0.713 0.310 3.4e-38
WB|WBGene00001175395 egl-6 [Caenorhabditis elegans 0.925 0.756 0.306 1.3e-36
WB|WBGene00007951 483 dmsr-8 [Caenorhabditis elegans 0.928 0.621 0.307 3.2e-33
WB|WBGene00017038379 dmsr-4 [Caenorhabditis elegans 0.894 0.762 0.304 1.8e-30
WB|WBGene00013222394 dmsr-6 [Caenorhabditis elegans 0.882 0.723 0.252 5.2e-26
WB|WBGene00012962401 dmsr-5 [Caenorhabditis elegans 0.640 0.516 0.245 1.9e-24
FB|FBgn0033579 CG13229 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 140/317 (44%), Positives = 205/317 (64%)

Query:     3 GTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTY 62
             GT  N+LNI+VLT KE++ TPIN IL  LAV D+ VMLEY+P++ Y Y      +   +Y
Sbjct:    87 GTIANILNIMVLTRKEMAKTPINNILKWLAVADMFVMLEYIPYTSYQYIYMGPGEKDLSY 146

Query:    63 AGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYIL 122
               ++ +L+HMHF+Q+LHTISI  T+TLA+ R+VAIR P+              +L+ +IL
Sbjct:   147 TWAVCLLVHMHFTQILHTISIGLTVTLAVWRYVAIRHPNGGCANFLLAHSREAILLPFIL 206

Query:   123 PILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLP 182
               ++C P+YFVF +RE    +    EA+Y ++      + + +++  +FW++SV IKLLP
Sbjct:   207 SPILCLPTYFVFQVRETYDVDKVNSEAMYHVYF-----DKDSVLYRFNFWIHSVLIKLLP 261

Query:   183 CLVLSVISYYLIGALRQASKRKHQLKSKSGTPCP----------QSK----VEKRMDRTA 228
             C +L VIS  L+  L +AS+R+ +L+  +  P            +SK     ++R DRT 
Sbjct:   262 CGILIVISAVLMHVLCEASRRRLKLRDYNN-PAKYAIQLNLNETKSKKPPRCDRRNDRTT 320

Query:   229 HMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCS 288
              +LVAVL+LFLITEFPQG+L LLSG++ +CFF  CY P+GE+MD+LAL+N A+ F+LY  
Sbjct:   321 LLLVAVLVLFLITEFPQGLLGLLSGVMEKCFFAHCYPPFGELMDLLALINAAVGFVLYGL 380

Query:   289 MSRQFRVTFGQLFKPKN 305
             MS+QFR TF  LF  ++
Sbjct:   381 MSKQFRTTFRSLFMKRH 397
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS
GO:0004930 "G-protein coupled receptor activity" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0008188 "neuropeptide receptor activity" evidence=ISS
FB|FBgn0035331 DmsR-1 "Dromyosuppressin receptor 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0264002 DmsR-2 "Dromyosuppressin receptor 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00010191 dmsr-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00016428 dmsr-7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00001175 egl-6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00007951 dmsr-8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00017038 dmsr-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00013222 dmsr-6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00012962 dmsr-5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q923Y8TAAR1_MOUSENo assigned EC number0.24060.85130.8283yesN/A
Q923Y9TAAR1_RATNo assigned EC number0.24060.85130.8283yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
pfam10324317 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR 3e-21
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 1e-08
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor Srw Back     alignment and domain information 
 Score = 91.9 bits (229), Expect = 3e-21
 Identities = 73/317 (23%), Positives = 139/317 (43%), Gaps = 32/317 (10%)

Query: 7   NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
           N+ ++++LT K +  + IN I+ G+A+ D++ ML  +   I  + +   +         L
Sbjct: 14  NIFHLIILTRKSMRTSSINIIMIGIAICDIITMLLTIYNFIPEFIISYENSECIPPDSYL 73

Query: 67  FILIHMHFSQLLHTI---SIFQTLTLAICRHVAIRFP-----HKCSASCSESSCYISVLV 118
            +L+      L       S +  + +A+ R + ++ P      K S         I +++
Sbjct: 74  KVLLDWILESLQDISRRCSTWLGVFMALIRTLVVKNPMSNKIQKLSKP---KFGLIIIII 130

Query: 119 AYILPILICAPSYFVFSIREIQ-IWESGKLEALYQLH---------LSPLAKENNGLIFS 168
            +IL +      YF + I E   IW+     A +  +         LS L  +N+GL+  
Sbjct: 131 VFILSLPFSIFYYFRYEIVEEGGIWKPPPNCAGFPPNYTEPRYVLVLSELFTDNDGLLLK 190

Query: 169 LHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTA 228
           ++  +  +  K++PC++L +++  LI  LR+A K +  L S S           + DRT 
Sbjct: 191 IYLLIDGIVSKIIPCILLPILTILLIIELRKAKKSRKNLSSSS----------NKSDRTT 240

Query: 229 HMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVM-DILALLNGAINFILYC 287
            +++ + + F I EFP GI  ++               Y  V+  +L  +N   + ++  
Sbjct: 241 KLVIFMTISFFIAEFPLGISYIIQFFFYDDPGIRLILTYLSVIFSLLLTINAISHCLICF 300

Query: 288 SMSRQFRVTFGQLFKPK 304
            MS Q+R T  +LF  K
Sbjct: 301 LMSSQYRKTAKKLFGCK 317

Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srw is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz. Length = 317
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 323
KOG4219|consensus423 100.0
PHA03234338 DNA packaging protein UL33; Provisional 100.0
KOG4220|consensus503 100.0
PHA02834323 chemokine receptor-like protein; Provisional 100.0
PHA03235409 DNA packaging protein UL33; Provisional 100.0
PHA02638417 CC chemokine receptor-like protein; Provisional 100.0
PHA03087335 G protein-coupled chemokine receptor-like protein; 100.0
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 100.0
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.96
KOG2087|consensus363 99.95
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.93
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.83
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.75
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.73
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 99.48
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 99.45
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 99.44
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 99.19
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.67
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 98.64
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 98.62
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 98.53
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.47
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 98.45
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 98.37
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 98.24
KOG4193|consensus610 98.23
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 97.96
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 97.61
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 97.46
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 97.45
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 97.44
KOG4564|consensus473 97.31
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 97.26
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 95.71
PF1197076 Git3_C: G protein-coupled glucose receptor regulat 95.38
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 94.67
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 92.07
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 87.69
>KOG4219|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.4e-48  Score=312.54  Aligned_cols=288  Identities=19%  Similarity=0.237  Sum_probs=239.0

Q ss_pred             cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052           2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI   81 (323)
Q Consensus         2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~   81 (323)
                      ++++||++|++++..+|++|+.+|+|++|||+||++++++..++........     .|.+|+. .|.+..|+......+
T Consensus        48 vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~-----~W~~G~f-~C~f~nf~~itav~v  121 (423)
T KOG4219|consen   48 VAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQ-----EWYFGSF-YCRFVNFFPITAVFV  121 (423)
T ss_pred             HHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccccccc-eeeeccccchhhhhH
Confidence            5789999999999888888999999999999999999999999998877765     8999965 566888999999999


Q ss_pred             HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccc-cc
Q psy6052          82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPL-AK  160 (323)
Q Consensus        82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  160 (323)
                      |++++++||+|||.||.||++.+  .+++.++++++++|+.+++++.|..+..+....+.++ +.....|...|.+. ++
T Consensus       122 SVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d-~~~~~~~~~~~pe~~~~  198 (423)
T KOG4219|consen  122 SVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYD-GESRVVCVTAWPEHVCP  198 (423)
T ss_pred             hHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccC-CcceEEEEEecccccCC
Confidence            99999999999999999999987  6999999999999999999999999988887766544 44455566655544 22


Q ss_pred             cCcchh-hhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHH
Q psy6052         161 ENNGLI-FSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFL  239 (323)
Q Consensus       161 ~~~~~~-~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~  239 (323)
                      .+.... ...+.....++.+++|++++...|..|..++|..+....+..       +..+..+.++|+.||+.++++.|.
T Consensus       199 ~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d-------~~~~~~kak~K~vkmliiVV~~Fa  271 (423)
T KOG4219|consen  199 TENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD-------RKHEQLKAKKKVVKMLIIVVVIFA  271 (423)
T ss_pred             cchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc-------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            222211 122455666788999999999999999999998764333222       133556677889999999999999


Q ss_pred             HHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052         240 ITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN  305 (323)
Q Consensus       240 i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~  305 (323)
                      +||+|+.++.++....++-.........+....|+++.|++.||+||++.|++||.++++.|+++.
T Consensus       272 icWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp  337 (423)
T KOG4219|consen  272 ICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP  337 (423)
T ss_pred             HhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence            999999999998876555444555677778899999999999999999999999999999998874

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 5e-04
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 5e-04
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 8e-04
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure 
Iteration: 1

 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/283 (20%), Positives = 107/283 (37%), Gaps = 25/283 (8%)
Query: 25  NRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIF 84
           N  +   A  D+LV +  +PF+I      + +       G LFI     F  +L   SIF
Sbjct: 42  NYFVVSAAAADILVGVLAIPFAI-----AISTGFCAACHGCLFIAC---FVLVLTASSIF 93
Query: 85  QTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPILICAPSYFVFSIREIQIWES 144
             L +AI R++AIR P +             + + ++L         F   +  +  W +
Sbjct: 94  SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS--------FAIGLTPMLGWNN 145
Query: 145 GKLEALYQLHLSPLAKENNGLIFSLHFWM-YSVCIKLLPCLVLSVISYYLIGA-LRQASK 202
                  + H     +     +F     M Y V      C+++ ++   ++G  LR    
Sbjct: 146 CGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLL--LMLGVYLRIFLA 203
Query: 203 RKHQLKSKSGTPCPQSKVEKRMDRTAHM---LVAVLLLFLITEFPQGILALLSGILGRCF 259
            + QLK     P P  +    + +  H    L  ++ LF +   P  I+   +     C 
Sbjct: 204 ARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCS 263
Query: 260 FESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFK 302
               +  Y  +  +L+  N  +N  +Y    R+FR TF ++ +
Sbjct: 264 HAPLWLMYLAI--VLSHTNSVVNPFIYAYRIREFRQTFRKIIR 304
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 9e-16
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 2e-14
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 4e-12
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 5e-12
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 1e-11
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 2e-09
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 1e-07
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 4e-06
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 1e-05
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 7e-05
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 4e-04
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 4e-04
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 9e-04
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
 Score = 76.5 bits (188), Expect = 9e-16
 Identities = 52/328 (15%), Positives = 105/328 (32%), Gaps = 34/328 (10%)

Query: 3   GTQTNLLNIVV-LTHKELSATPINRILTGLAVTDLLVMLEY-VPFSIYMYFVHVRSKLYF 60
           G   N + I +    K L  TP N  +  LA +D    L    P      F+       +
Sbjct: 48  GCGGNGIVIYLFTKTKSLQ-TPANMFIINLAFSDFTFSLVNGFPLMTISCFLK-----KW 101

Query: 61  TYAGSLFILIHMHFSQLLHTISIFQTLT-LAICRHVAIRFPHKCSASCSESSCYISVLVA 119
            + G     ++     +   +SI  T+  ++I R+  I  P   S   S    +I ++  
Sbjct: 102 IF-GFAACKVYGFIGGIFGFMSIM-TMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFV 159

Query: 120 YILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIK 179
           ++  +L      F +          G L      ++S   +++      L      +   
Sbjct: 160 WLWSVLWAIGPIFGWG----AYTLEGVLCNCSFDYIS---RDSTTRSNIL---CMFILGF 209

Query: 180 LLPCLVLSVISYYLI-GALRQASKRKHQLKSKSGTPCPQSKVEKRMD--RTAHMLVAVLL 236
             P L++    Y+ I  ++    K    +  +      +          R A + + ++ 
Sbjct: 210 FGPILII-FFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVS 268

Query: 237 LFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALL---NGAINFILYCSMSRQF 293
            FL++  P  ++ALL+       F            +  +    +   N ++Y     +F
Sbjct: 269 QFLLSWSPYAVVALLA------QFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKF 322

Query: 294 RVTFGQLFKPKNVLGKIVPPTNTDIQST 321
           R    Q F       +       D +  
Sbjct: 323 REAISQTFPWVLTCCQFDDKETEDDKDA 350
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 100.0
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 100.0
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 100.0
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 100.0
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 100.0
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 100.0
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 100.0
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 100.0
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 100.0
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 100.0
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 100.0
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 100.0
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 100.0
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 100.0
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 100.0
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 100.0
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 100.0
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 98.92
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.57
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 98.08
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 88.02
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=2.1e-49  Score=352.98  Aligned_cols=294  Identities=17%  Similarity=0.200  Sum_probs=215.5

Q ss_pred             cccccceeeEEEeecCCc---CcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHH
Q psy6052           2 NGTQTNLLNIVVLTHKEL---SATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLL   78 (323)
Q Consensus         2 ig~~gN~~vi~v~~~~~~---~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~   78 (323)
                      +|++||+++++++.++++   +++++|+|++|||++|++.+++.+|+.+.......  . .|.+|.. .|.+..++..++
T Consensus        45 ~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~--~-~w~~g~~-~C~~~~~~~~~~  120 (510)
T 4grv_A           45 VGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVH--H-PWAFGDA-GCRGYYFLRDAC  120 (510)
T ss_dssp             HHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--S-SCSSHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--C-CEEhhHH-HHHHHHHHHHHH
Confidence            689999999988877654   34788999999999999999999999887655321  1 6888854 577778999999


Q ss_pred             HHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccc
Q psy6052          79 HTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPL  158 (323)
Q Consensus        79 ~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (323)
                      ..+|++++++||+|||+||++|++|++..+++++..+++++|++++++++|+++.++...............|...    
T Consensus       121 ~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~~----  196 (510)
T 4grv_A          121 TYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPI----  196 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGGGEEEEEC----
T ss_pred             HHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCCccccccc----
Confidence            9999999999999999999999999999999999999999999999999999988776554322222222233322    


Q ss_pred             cccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhcccc----------------------------
Q psy6052         159 AKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSK----------------------------  210 (323)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~----------------------------  210 (323)
                         ........+..+..++.+++|+++++++|.+|+++++++.+.....+..                            
T Consensus       197 ---~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (510)
T 4grv_A          197 ---VDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPS  273 (510)
T ss_dssp             ---SCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCEEEETTEECCCSSS
T ss_pred             ---cccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccccccCCCCC
Confidence               2233445555566677899999999999999999998643321110000                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy6052         211 --------------------------------------------------------------------------------  210 (323)
Q Consensus       211 --------------------------------------------------------------------------------  210 (323)
                                                                                                      
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (510)
T 4grv_A          274 LNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSL  353 (510)
T ss_dssp             HHHHHHSCCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCccccccCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCccccCCCCCCCCCCccc
Confidence                                                                                            


Q ss_pred             -------------------------------------CCCCCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHh
Q psy6052         211 -------------------------------------SGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSG  253 (323)
Q Consensus       211 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~  253 (323)
                                                           .....+..+..++|+|++|++++++++|++||+|+.+..++..
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~  433 (510)
T 4grv_A          354 RMLNNKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFC  433 (510)
T ss_dssp             HHHTTTCHHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                 0000011223456789999999999999999999999999887


Q ss_pred             hhccccccc----cccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcc
Q psy6052         254 ILGRCFFES----CYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNV  306 (323)
Q Consensus       254 ~~~~~~~~~----~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~  306 (323)
                      +.++.....    ....+..++.+|+++||++||+||+++|++||++++++++|++.
T Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~C~  490 (510)
T 4grv_A          434 YISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVFLSTLACLCP  490 (510)
T ss_dssp             TTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC----------
T ss_pred             HcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Confidence            765433221    22345567889999999999999999999999999999987653
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 323
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 2e-11
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.5 bits (148), Expect = 2e-11
 Identities = 47/295 (15%), Positives = 92/295 (31%), Gaps = 28/295 (9%)

Query: 7   NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
           N L + V    +   TP+N IL  LAV DL ++      ++Y           +   G  
Sbjct: 55  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG------YFVFGPT 108

Query: 67  FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILI 126
              +   F+ L   I+++  + LAI R+V +  P          +         +     
Sbjct: 109 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACA 168

Query: 127 CAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVL 186
             P            W     E +           +             V   ++P +V+
Sbjct: 169 APPLVG---------WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVI 219

Query: 187 SVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQG 246
                 L+  +++A+ +              +  +K       M++ +++ FLI   P  
Sbjct: 220 FFCYGQLVFTVKEAAAQ----------QQESATTQKAEKEVTRMVIIMVIAFLICWLPYA 269

Query: 247 ILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLF 301
            +A          F   +     +    A  +   N ++Y  M++QFR       
Sbjct: 270 GVAFYIFTHQGSDFGPIFMT---IPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL 321

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 100.0
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.3e-41  Score=282.15  Aligned_cols=278  Identities=18%  Similarity=0.220  Sum_probs=214.2

Q ss_pred             cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052           2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI   81 (323)
Q Consensus         2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~   81 (323)
                      +|++||+++++++.++|++|++.|++++|||++|++.++...|..+......     .|..+ ...|....++...+..+
T Consensus        50 ~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~-----~~~~~-~~~c~~~~~~~~~~~~~  123 (348)
T d1u19a_          50 LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG-----YFVFG-PTGCNLEGFFATLGGEI  123 (348)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT-----SCTTH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-----ccccC-chhhhhhhhccccceee
Confidence            6899999999999888888899999999999999999998888887766653     45554 55777888899999999


Q ss_pred             HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052          82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE  161 (323)
Q Consensus        82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (323)
                      +.++++++++|||.+|++|++++. .++++....++.+|..+.++..|+.+.......   +.+.  ..|..+..   ..
T Consensus       124 s~~~l~~is~~R~~~i~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~---~~  194 (348)
T d1u19a_         124 ALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIP---EGMQ--CSCGIDYY---TP  194 (348)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEE---ETTT--TEEECCCS---CC
T ss_pred             ecchhhhhhcccceeeeccccccc-cccccccccceeeehhhhheecccccccceecc---CCcc--cccccccc---cc
Confidence            999999999999999999999875 466777788888899999988887765543332   2222  22222211   22


Q ss_pred             CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHH
Q psy6052         162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLIT  241 (323)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~  241 (323)
                      ........+......+.+++|++++.++|.++.+++|++.++.+          +..++.++++|.++++.+++++|++|
T Consensus       195 ~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~~f~~~  264 (348)
T d1u19a_         195 HEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ----------ESATTQKAEKEVTRMVIIMVIAFLIC  264 (348)
T ss_dssp             CGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC----------SSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc----------hhhhhHHHHhhHhheEEEeehHHHHH
Confidence            22333444445556666789999999999999887766543221          13345667899999999999999999


Q ss_pred             hhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCccc
Q psy6052         242 EFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVL  307 (323)
Q Consensus       242 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~  307 (323)
                      |+|+.+..++....+..   ........+..++..+|+++||+||.+++++||++++++++|++++
T Consensus       265 ~~P~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~c~~~~  327 (348)
T d1u19a_         265 WLPYAGVAFYIFTHQGS---DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNP  327 (348)
T ss_dssp             HHHHHHHHHHHHHTTTS---CCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCCC
T ss_pred             hhHHHhhhheeeccCCc---cccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCC
Confidence            99999888776554432   2234556678889999999999999999999999999999876643