Psyllid ID: psy6063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEccEEEEEEHHHHHHccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccccccccccccccHHHHHHHEEEccccccccccHHHHHHcHHHHHEEcccHHccccEEEEEHHHHHHcccHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MSRLRNLYEALSrkkidvgdddvsiaegknpaggadgvgklplerasdapQLARVLGLIDLTMLGVGATLGVGVYVLAGsvarnqagpsVVISFAIAAVTSLFSVIIL
Flexible Loop (DISEMBL)
MSRLRNLYEalsrkkidvgdddvsiaegknpaggadgvGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL
Low Complexity Region (SEG)
MSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL
Disordered region (IsUnstruct)
**************************************************QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVII*
Disordered Region (DISOPRED)
***********SR*******************************************GLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL
Disordered Region (DISEMBL)
MSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL
Disordered Region (DISPRO)
*****N**EALSR*********************ADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
P70423	618	Cationic amino acid trans	yes	N/A	0.574	0.100	0.548	1e-11
O08812	619	Cationic amino acid trans	yes	N/A	0.574	0.100	0.548	1e-11
Q8WY07	619	Cationic amino acid trans	yes	N/A	0.638	0.111	0.521	3e-11
Q09143	622	High affinity cationic am	no	N/A	0.629	0.109	0.506	5e-11
Q5PR34	640	Low affinity cationic ami	no	N/A	0.5	0.084	0.574	7e-11
P30825	629	High affinity cationic am	no	N/A	0.527	0.090	0.578	7e-11
P30823	624	High affinity cationic am	no	N/A	0.527	0.091	0.578	9e-11
Q6DCE8	622	Low affinity cationic ami	N/A	N/A	0.546	0.094	0.525	4e-10
B3TP03	654	Low affinity cationic ami	yes	N/A	0.472	0.077	0.607	4e-10
A8I499	657	Low affinity cationic ami	no	N/A	0.481	0.079	0.596	5e-10

>sp|P70423|CTR3_MOUSE Cationic amino acid transporter 3 OS=Mus musculus GN=Slc7a3 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 43  LERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           LE      +LAR L  +DL  LGVG+TLG GVYVLAG VA+++AGPS+VI F +AA++S+
Sbjct: 19  LELGMGETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSV 78

Query: 103 FS 104
            +
Sbjct: 79  LA 80

Mediates the uptake of the cationic amino acids arginine, lysine and ornithine in a sodium-independent manner.
Mus musculus (taxid: 10090)

>sp|O08812|CTR3_RAT Cationic amino acid transporter 3 OS=Rattus norvegicus GN=Slc7a3 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 43  LERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           LE      +LAR L  +DL  LGVG+TLG GVYVLAG VA+ +AGPS+VI F +AA++S+
Sbjct: 19  LELGMGETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKEKAGPSIVICFLVAALSSV 78

Query: 103 FS 104
            +
Sbjct: 79  LA 80

Mediates the uptake of the cationic amino acids arginine, lysine and ornithine in a sodium-independent manner.

Rattus norvegicus (taxid: 10116)

>sp|Q8WY07|CTR3_HUMAN Cationic amino acid transporter 3 OS=Homo sapiens GN=SLC7A3 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 48/69 (69%)

Query: 34  GADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVIS 93
           G   V +  LE      +LAR L  +DL  LGVG+TLG GVYVLAG VA+++AGPS+VI 
Sbjct: 10  GQKLVRRRTLESGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVIC 69

Query: 94  FAIAAVTSL 102
           F +AA++S+
Sbjct: 70  FLVAALSSV 78

Mediates the uptake of the cationic amino acids arginine, lysine and ornithine in a sodium-independent manner.

Homo sapiens (taxid: 9606)

>sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 5/73 (6%)

Query: 37  GVGKLPLER-----ASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVV 91
           G+G+  L R     + +  +L+R L   DL  LGVG+TLG GVYVLAG+VAR  AGP++V
Sbjct: 8   GLGQQMLRRKVVDCSREESRLSRCLNTYDLVALGVGSTLGAGVYVLAGAVARENAGPAIV 67

Query: 92  ISFAIAAVTSLFS 104
           ISF IAA+ S+ +
Sbjct: 68  ISFLIAALASVLA 80

High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor.

Mus musculus (taxid: 10090)

>sp|Q5PR34|CTR2_DANRE Low affinity cationic amino acid transporter 2 OS=Danio rerio GN=slc7a2 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 41/54 (75%)

Query: 51  QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           +L R L  +DL  LGVG+TLG GVYVLAG VA+  +GPS+V+SF IAA+ S+ +
Sbjct: 27  KLCRCLSTVDLIALGVGSTLGAGVYVLAGEVAKGSSGPSIVVSFLIAALASVMA 80

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine).

Danio rerio (taxid: 7955)

>sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 48  DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           +  +L+R L   DL  LGVG+TLG GVYVLAG+VAR  AGP++VISF IAA+ S+ +
Sbjct: 24  EETRLSRCLNTFDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASVLA 80

High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor.

Homo sapiens (taxid: 9606)

>sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 48  DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           +  +L+R L   DL  LGVG+TLG GVYVLAG+VAR  AGP++VISF IAA+ S+ +
Sbjct: 24  EESRLSRCLNTYDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASVLA 80

High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor.

Rattus norvegicus (taxid: 10116)

>sp|Q6DCE8|CTR2_XENLA Low affinity cationic amino acid transporter 2 OS=Xenopus laevis GN=slc7a2 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/59 (52%), Positives = 42/59 (71%)

Query: 46  ASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
            + +  L R L  +DL  LGVG+TLG GVYVLAG VA+  +GPS++ISF IAA+ S+ +
Sbjct: 24  GTGSSDLCRCLSTLDLVALGVGSTLGAGVYVLAGEVAKVDSGPSIIISFLIAALASVLA 82

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine).

Xenopus laevis (taxid: 8355)

>sp|B3TP03|CTR2_CHICK Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 52  LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           L R L  +DL  LGVG+TLG GVYVLAG VA++ +GPS+V+SF IAA+ S+
Sbjct: 29  LCRCLSTLDLIALGVGSTLGAGVYVLAGEVAKSDSGPSIVVSFLIAALASV 79

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine).

Gallus gallus (taxid: 9031)

>sp|A8I499|CTR2_PIG Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 40/52 (76%)

Query: 51  QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           +L R L  +DL  LGVG+TLG GVYVLAG VA+  +GPS+V+SF IAA+ S+
Sbjct: 29  KLCRCLSTMDLIALGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASV 80

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
307197497	714	Low affinity cationic amino acid transpo	0.518	0.078	0.732	8e-15
332030638	713	Low affinity cationic amino acid transpo	0.694	0.105	0.441	2e-14
332017888	603	High affinity cationic amino acid transp	0.685	0.122	0.469	3e-14
307170851	612	Low affinity cationic amino acid transpo	0.685	0.120	0.436	4e-14
307169946	616	Cationic amino acid transporter 3 [Campo	0.5	0.087	0.759	7e-14
380019347	602	PREDICTED: LOW QUALITY PROTEIN: high aff	0.666	0.119	0.479	8e-14
195377771	579	GJ11800 [Drosophila virilis] gi|19415481	0.527	0.098	0.719	1e-13
345483731	620	PREDICTED: high affinity cationic amino	0.5	0.087	0.722	2e-13
345483725	599	PREDICTED: high affinity cationic amino	0.5	0.090	0.722	2e-13
322801571	603	hypothetical protein SINV_08605 [Solenop	0.694	0.124	0.505	2e-13

>gi|307197497|gb|EFN78731.1| Low affinity cationic amino acid transporter 2 [Harpegnathos saltator]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 41/56 (73%), Positives = 49/56 (87%)

Query: 51  QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVI 106
           QLAR L  +DLT LG+GATLGVGVYVLAGSV+++ AGP+VVISFAIAAV S+F+ I
Sbjct: 146 QLARYLSAVDLTALGIGATLGVGVYVLAGSVSKSTAGPAVVISFAIAAVASMFAGI 201

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030638|gb|EGI70326.1| Low affinity cationic amino acid transporter 2 [Acromyrmex echinatior]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 61/102 (59%), Gaps = 27/102 (26%)

Query: 3   RLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLT 62
           +LR+LY+  SR+K+    ++ +                           LARVL  +DLT
Sbjct: 126 KLRDLYKTFSRRKVIDNTEEST---------------------------LARVLSTLDLT 158

Query: 63  MLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
            LG+G+TLGVG Y+LAGSVA+  AGP+VVISFAIAAV S+F+
Sbjct: 159 ALGIGSTLGVGAYILAGSVAKKHAGPAVVISFAIAAVASMFA 200

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017888|gb|EGI58548.1| High affinity cationic amino acid transporter 1 [Acromyrmex echinatior]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 24/98 (24%)

Query: 7   LYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGV 66
           L++ALSR++I++ ++D                        ++  +LARVLGL DLT LGV
Sbjct: 5   LWKALSRRRIELENED------------------------TNGERLARVLGLFDLTALGV 40

Query: 67  GATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           GATLG+GVYVLAGSVA+  AGP+V +SF IAA+ S F+
Sbjct: 41  GATLGLGVYVLAGSVAKETAGPAVSVSFLIAAIASAFA 78

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170851|gb|EFN62962.1| Low affinity cationic amino acid transporter 2 [Camponotus floridanus]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 29/103 (28%)

Query: 3   RLRNLYEALSRKKI-DVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDL 61
           ++R++Y+  SRKK+ ++  D                             +LARVL  +DL
Sbjct: 17  KIRDVYKVFSRKKVVNISQDS----------------------------KLARVLSTLDL 48

Query: 62  TMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           T LGVG+TLGVGVYVLAG+VAR+ AGP+V++SFAIAA+ S+F+
Sbjct: 49  TALGVGSTLGVGVYVLAGTVARSTAGPAVIVSFAIAAIASMFA 91

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169946|gb|EFN62455.1| Cationic amino acid transporter 3 [Camponotus floridanus]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/54 (75%), Positives = 47/54 (87%)

Query: 51  QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           QLARVLGL DLT LGVGATLG+GVYVLAGSVA++ AGP+V ISF IAA+ S F+
Sbjct: 37  QLARVLGLFDLTALGVGATLGLGVYVLAGSVAKDTAGPAVCISFLIAAIASAFA 90

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019347|ref|XP_003693571.1| PREDICTED: LOW QUALITY PROTEIN: high affinity cationic amino acid transporter 1-like [Apis florea]

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 47/98 (47%), Positives = 59/98 (60%), Gaps = 26/98 (26%)

Query: 7   LYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGV 66
           L++ALSR++ID                          E   D  +LARVLGL DLT LGV
Sbjct: 5   LWKALSRRRID--------------------------ENLEDKSELARVLGLFDLTALGV 38

Query: 67  GATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           G+TLG+GVYVLAGS+A+  AGP+V ISF IAA+ S F+
Sbjct: 39  GSTLGLGVYVLAGSIAKETAGPAVCISFLIAAIASAFA 76

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377771|ref|XP_002047661.1| GJ11800 [Drosophila virilis] gi|194154819|gb|EDW70003.1| GJ11800 [Drosophila virilis]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/57 (71%), Positives = 48/57 (84%)

Query: 48  DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           D P+LAR+L L DLT LGVG+TLG+GVYVLAG VAR+ AGP+V I FAIAAV SLF+
Sbjct: 18  DGPKLARILRLHDLTALGVGSTLGLGVYVLAGQVARHIAGPAVGICFAIAAVASLFA 74

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483731|ref|XP_003424873.1| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 4 [Nasonia vitripennis]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/54 (72%), Positives = 48/54 (88%)

Query: 51  QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           +LARVLG+IDLT LGVG+TLG+GVYVLAGSVA++ AGP+V ISF IAA+ S F+
Sbjct: 24  ELARVLGIIDLTALGVGSTLGLGVYVLAGSVAKDTAGPAVCISFLIAAIASAFA 77

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483725|ref|XP_003424871.1| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 2 [Nasonia vitripennis] gi|345483727|ref|XP_001599622.2| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 1 [Nasonia vitripennis] gi|345483729|ref|XP_003424872.1| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 3 [Nasonia vitripennis]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/54 (72%), Positives = 48/54 (88%)

Query: 51  QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           +LARVLG+IDLT LGVG+TLG+GVYVLAGSVA++ AGP+V ISF IAA+ S F+
Sbjct: 24  ELARVLGIIDLTALGVGSTLGLGVYVLAGSVAKDTAGPAVCISFLIAAIASAFA 77

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801571|gb|EFZ22227.1| hypothetical protein SINV_08605 [Solenopsis invicta]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 63/99 (63%), Gaps = 24/99 (24%)

Query: 7   LYEALSRKKIDVGD-DDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLG 65
           L++ALSR++++  + DDV+  E                       +LARVLGL DLT LG
Sbjct: 3   LWKALSRRRVEEENKDDVAKDE-----------------------RLARVLGLFDLTALG 39

Query: 66  VGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           VGATLG+GVYVLAGSVA+  AGP+V ISF IAAV S F+
Sbjct: 40  VGATLGLGVYVLAGSVAKETAGPAVSISFLIAAVASAFA 78

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
FB|FBgn0036764	633	CG5535 [Drosophila melanogaste	0.592	0.101	0.584	4.8e-14
FB|FBgn0036493	1063	CG7255 [Drosophila melanogaste	0.5	0.050	0.722	1.7e-13
FB|FBgn0037203	604	slif "slimfast" [Drosophila me	0.518	0.092	0.714	1.9e-13
UNIPROTKB|Q5JR49	121	SLC7A1 "High affinity cationic	0.5	0.446	0.611	3.1e-12
RGD|1305905	463	Slc7a4 "solute carrier family	0.601	0.140	0.507	3.9e-12
WB|WBGene00015197	585	B0454.6 [Caenorhabditis elegan	0.490	0.090	0.547	5.3e-12
ZFIN|ZDB-GENE-080219-39	613	zgc:175280 "zgc:175280" [Danio	0.583	0.102	0.539	6.4e-12
UNIPROTKB|F1RK99	635	SLC7A4 "Uncharacterized protei	0.601	0.102	0.523	6.8e-12
UNIPROTKB|F1MUG8	619	SLC7A3 "Uncharacterized protei	0.620	0.108	0.522	1.1e-11
UNIPROTKB|Q8WY07	619	SLC7A3 "Cationic amino acid tr	0.620	0.108	0.522	1.1e-11

FB|FBgn0036764 CG5535 [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 38/65 (58%), Positives = 53/65 (81%)

Query:    40 KLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAV 99
             K PLE ++++ +LA+VL   DLT LG+G+TLGVGVYVLAG V++  AGP+VV+SF IAA+
Sbjct:    28 KKPLEDSNES-KLAKVLSAFDLTALGIGSTLGVGVYVLAGEVSKQYAGPAVVVSFLIAAI 86

Query:   100 TSLFS 104
              S+F+
Sbjct:    87 ASIFA 91

GO:0006865 "amino acid transport" evidence=ISS

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

FB|FBgn0036493 CG7255 [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 39/54 (72%), Positives = 47/54 (87%)

Query:    51 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
             +L RVLGL DLT LGVG+TLG GVYVLAG +A++QAGPSV+ISFAIAA+ SL +
Sbjct:    27 KLNRVLGLWDLTALGVGSTLGAGVYVLAGQIAKDQAGPSVMISFAIAALASLLA 80

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

FB|FBgn0037203 slif "slimfast" [Drosophila melanogaster (taxid:7227)]

 Score = 185 (70.2 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 40/56 (71%), Positives = 45/56 (80%)

Query:    51 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVI 106
             QLARVL L DLT LGVG+TLG+GVYVLAG VA N AGP+V ISF IAA+ S F+ I
Sbjct:    22 QLARVLNLFDLTALGVGSTLGLGVYVLAGQVAFNIAGPAVTISFLIAAIASAFAGI 77

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0040007 "growth" evidence=IMP

GO:0006865 "amino acid transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IMP

UNIPROTKB|Q5JR49 SLC7A1 "High affinity cationic amino acid transporter 1" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query:    51 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
             +L+R L   DL  LGVG+TLG GVYVLAG+VAR  AGP++VISF IAA+ S+ +
Sbjct:    27 RLSRCLNTFDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASVLA 80

GO:0016020 "membrane" evidence=IEA

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

RGD|1305905 Slc7a4 "solute carrier family 7 (orphan transporter), member 4" [Rattus norvegicus (taxid:10116)]

 Score = 171 (65.3 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 33/65 (50%), Positives = 47/65 (72%)

Query:    42 PLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS 101
             PLE +S    L R L  +DLT+LGVG  +G G+YVL G+VA++ AGP+V++SF +AAV S
Sbjct:    23 PLEESSTETSLRRCLSTLDLTLLGVGGMVGSGLYVLTGTVAKDMAGPAVLLSFLVAAVAS 82

Query:   102 LFSVI 106
             L + +
Sbjct:    83 LLAAL 87

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00015197 B0454.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 162 (62.1 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query:    52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
             L R LGL+D+T L +G  +G G+YVL G+V RNQAGPS++ SFA+A + +L S
Sbjct:    25 LRRCLGLMDITFLALGQMMGAGIYVLTGTVVRNQAGPSIIFSFALAGIAALLS 77

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-080219-39 zgc:175280 "zgc:175280" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/63 (53%), Positives = 44/63 (69%)

Query:    42 PLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS 101
             PLE   +     R L  +DL  LGVG+TLG GVYVL+G VAR  +GPS+++SF IAAV S
Sbjct:    18 PLEPDGEESNFKRCLSTLDLVALGVGSTLGAGVYVLSGEVARTVSGPSIIVSFFIAAVAS 77

Query:   102 LFS 104
             +F+
Sbjct:    78 VFA 80

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1RK99 SLC7A4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 171 (65.3 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 34/65 (52%), Positives = 47/65 (72%)

Query:    42 PLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS 101
             PLE A+    L R L  +DLTMLGVGA +G G+YVL G+VA+  +GP+V++SF +AAV S
Sbjct:    17 PLEEATMETLLQRCLSTLDLTMLGVGAMVGSGLYVLTGTVAKEISGPAVIVSFGVAAVVS 76

Query:   102 LFSVI 106
             L + +
Sbjct:    77 LMAAL 81

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1MUG8 SLC7A3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 35/67 (52%), Positives = 48/67 (71%)

Query:    38 VGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIA 97
             V +  LE      +LAR L  +DL  LGVG+TLG GVYVLAG VA+++AGPS+VI F +A
Sbjct:    14 VRRRTLEPGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVA 73

Query:    98 AVTSLFS 104
             A++S+ +
Sbjct:    74 ALSSMLA 80

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=IEA

GO:0015189 "L-lysine transmembrane transporter activity" evidence=IEA

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8WY07 SLC7A3 "Cationic amino acid transporter 3" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 35/67 (52%), Positives = 48/67 (71%)

Query:    38 VGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIA 97
             V +  LE      +LAR L  +DL  LGVG+TLG GVYVLAG VA+++AGPS+VI F +A
Sbjct:    14 VRRRTLESGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVA 73

Query:    98 AVTSLFS 104
             A++S+ +
Sbjct:    74 ALSSVLA 80

GO:0016021 "integral to membrane" evidence=IEA

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

GO:0015189 "L-lysine transmembrane transporter activity" evidence=IEA

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3TP03	CTR2_CHICK	No assigned EC number	0.6078	0.4722	0.0779	yes	N/A
P70423	CTR3_MOUSE	No assigned EC number	0.5483	0.5740	0.1003	yes	N/A
O08812	CTR3_RAT	No assigned EC number	0.5483	0.5740	0.1001	yes	N/A
Q8WY07	CTR3_HUMAN	No assigned EC number	0.5217	0.6388	0.1114	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	108
TIGR00906	557	TIGR00906, 2A0303, cationic amino acid transport p	1e-16
TIGR00909	429	TIGR00909, 2A0306, amino acid transporter	3e-10
COG1113	462	COG1113, AnsP, Gamma-aminobutyrate permease and re	0.003

>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease

 Score = 73.3 bits (180), Expect = 1e-16
 Identities = 25/56 (44%), Positives = 39/56 (69%)

Query: 51  QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVI 106
           ++ R L   DL  LG+G+T+G G+YVL G VARN +GP++V+SF I+ + ++ S  
Sbjct: 25  KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGF 80

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 28/53 (52%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 52  LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           L+R LGL DLTMLG+GA +G G++V+ G  A  +AGP+V++SF +A +T+LF 
Sbjct: 1   LSRELGLFDLTMLGIGAMIGTGIFVVTGIAA-GKAGPAVILSFVLAGLTALFI 52

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429

>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 50  PQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLF 103
             L R L    + ++ +G  +G G+++ +GS     AGPSV++++ IA +    
Sbjct: 9   QGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIA-MAGPSVLLAYLIAGIFVFL 61

Length = 462

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.5
PRK15049	499	L-asparagine permease; Provisional	99.3
PRK10249	458	phenylalanine transporter; Provisional	99.24
KOG1286|consensus	554		99.17
PRK10836	489	lysine transporter; Provisional	99.17
PRK11387	471	S-methylmethionine transporter; Provisional	99.16
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.11
PRK10238	456	aromatic amino acid transporter; Provisional	99.1
PRK10746	461	putative transport protein YifK; Provisional	99.1
COG0833	541	LysP Amino acid transporters [Amino acid transport	99.08
PRK10580	457	proY putative proline-specific permease; Provision	99.04
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.98
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.96
TIGR00913	478	2A0310 amino acid permease (yeast).	98.84
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.79
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.79
TIGR00911	501	2A0308 L-type amino acid transporter.	98.76
PRK10655	438	potE putrescine transporter; Provisional	98.75
PRK10644	445	arginine:agmatin antiporter; Provisional	98.74
PRK11021	410	putative transporter; Provisional	98.72
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.66
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	98.65
KOG1287|consensus	479		98.58
TIGR00909	429	2A0306 amino acid transporter.	98.47
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.41
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.33
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.25
TIGR00907	482	2A0304 amino acid permease (GABA permease).	98.08
TIGR00930	953	2a30 K-Cl cotransporter.	97.98
TIGR00912	359	2A0309 spore germination protein (amino acid perme	97.67
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.43
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	97.29
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.21
PRK15238	496	inner membrane transporter YjeM; Provisional	96.78
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	96.64
PHA02764	399	hypothetical protein; Provisional	95.76
KOG1289|consensus	550		95.73
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	93.49
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	91.89
PRK10483	414	tryptophan permease; Provisional	91.35
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	90.9
COG1115	452	AlsT Na+/alanine symporter [Amino acid transport a	90.64
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	89.85
PRK09664	415	tryptophan permease TnaB; Provisional	89.71
PF03845	320	Spore_permease: Spore germination protein; InterPr	89.17
TIGR00814	397	stp serine transporter. The HAAAP family includes	85.09
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	82.74
PRK15132	403	tyrosine transporter TyrP; Provisional	81.13
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	80.43

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.50  E-value=3.3e-14  Score=119.74  Aligned_cols=81  Identities=37%  Similarity=0.649  Sum_probs=70.4

Q ss_pred             hHHHHHHHhhccccCCCCCchhhhccCCCCCCCCCCCCCccccCCCccccccccChhhHHHHhhcceecchhhhccHHhH
Q psy6063           3 RLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVA   82 (108)
Q Consensus         3 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~   82 (108)
                      ....|.++|+|||+++.+                         +.++++++|+|+.++++++++|++||+|+|+.+|.++
T Consensus         2 ~~~~~~~~~~r~k~~~~~-------------------------~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a   56 (557)
T TIGR00906         2 AVLTFARCLIRRKIVDLD-------------------------SREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVA   56 (557)
T ss_pred             chHHHHHHHhccCCcccc-------------------------cccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHH
Confidence            456788999999999651                         1224469999999999999999999999999999876


Q ss_pred             HhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          83 RNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        83 ~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      ...+||+++++|+++|+.+++.++||
T Consensus        57 ~~~aGp~~~ls~liagv~~l~~al~y   82 (557)
T TIGR00906        57 RNDSGPAIVLSFLISGLAAVLSGFCY   82 (557)
T ss_pred             HhccCcHHHHHHHHHHHHHHHHHHHH
Confidence            45699999999999999999999997

>PRK15049 L-asparagine permease; Provisional

Probab=99.30  E-value=3.3e-12  Score=106.05  Aligned_cols=61  Identities=23%  Similarity=0.525  Sum_probs=55.4

Q ss_pred             CCccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          47 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        47 ~~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      ..++++||+|+.+|++++++|++||+|+|+++|.++ ..+||+.+++|+++++++++.++||
T Consensus        21 ~~~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~-~~aGp~~il~~li~~i~~~~v~~sl   81 (499)
T PRK15049         21 AHEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARL-QMAGPALALVYLICGLFSFFILRAL   81 (499)
T ss_pred             CCchhhhccCCHhHhHHHhhhccccchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            334469999999999999999999999999999988 5899988899999999999999875

>PRK10249 phenylalanine transporter; Provisional

Probab=99.24  E-value=7.9e-12  Score=102.32  Aligned_cols=61  Identities=23%  Similarity=0.549  Sum_probs=56.0

Q ss_pred             CCccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          47 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        47 ~~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      .+.++++|+|+.+|++++++|++||+|+|+++|.++ +.+||+++++|+++|+++++.++||
T Consensus        14 ~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~-~~aGp~~~l~~li~~~~~~~~~~~~   74 (458)
T PRK10249         14 NQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAI-QMAGPAVLLGYGVAGIIAFLIMRQL   74 (458)
T ss_pred             CCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            444579999999999999999999999999999988 5799999999999999999999886

>KOG1286|consensus

Probab=99.17  E-value=4.8e-12  Score=107.65  Aligned_cols=60  Identities=42%  Similarity=0.685  Sum_probs=54.6

Q ss_pred             ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      ++++||+|+.+|++++++|++||+|+|+++|.++.+.+||+++++|+++|+.+++.++||
T Consensus        25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~   84 (554)
T KOG1286|consen   25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCL   84 (554)
T ss_pred             cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999999999999864444499999999999999999987

>PRK10836 lysine transporter; Provisional

Probab=99.17  E-value=2.5e-11  Score=99.96  Aligned_cols=60  Identities=33%  Similarity=0.662  Sum_probs=55.2

Q ss_pred             CccccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063          48 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        48 ~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y  108 (108)
                      ++.++||+|+.+|++++++|++||+|+|+++|.++ +.+|| +++++|+++|+++++.++||
T Consensus         9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~-~~aGp~~~l~a~~i~g~~~~~~al~~   69 (489)
T PRK10836          9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATI-SQAGPGGALLSYMLIGLMVYFLMTSL   69 (489)
T ss_pred             CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHH-HhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            34569999999999999999999999999999988 57999 58999999999999999986

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.16  E-value=3.6e-11  Score=98.52  Aligned_cols=61  Identities=23%  Similarity=0.500  Sum_probs=55.4

Q ss_pred             CCccccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063          47 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        47 ~~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y  108 (108)
                      ++..++||+|+.++++++++|++||+|+|+++|.++ +.+|| +++++|+++|+++++.++||
T Consensus         7 ~~~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~-~~~G~~~~~l~~~i~~~~~~~~~~~~   68 (471)
T PRK11387          7 QQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYII-STTGAAGTLLAYLIGALVVYLVMQCL   68 (471)
T ss_pred             CcchhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            334569999999999999999999999999999988 57998 78999999999999999986

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.11  E-value=6.2e-11  Score=97.20  Aligned_cols=59  Identities=22%  Similarity=0.507  Sum_probs=54.2

Q ss_pred             ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      .++++|+|++++++++++|++||+|+|+++|.++ +.+||+.+++|+++++++++.++||
T Consensus        15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~-~~aGp~~i~~~~i~~i~~~~~~~s~   73 (469)
T PRK11049         15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTI-SLAGPSIIFVYMIIGFMLFFVMRAM   73 (469)
T ss_pred             chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHH-hhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999999999988 5799988999999999999988874

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.10  E-value=9.1e-11  Score=96.04  Aligned_cols=59  Identities=27%  Similarity=0.546  Sum_probs=54.7

Q ss_pred             ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      ++++||+|+.+|++++++|++||+|+|+++|.++ +.+||+++++|+++|+++++.++||
T Consensus         7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~Gp~~i~~~~i~gi~~~~v~~s~   65 (456)
T PRK10238          7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVI-QSAGPGIILGYAIAGFIAFLIMRQL   65 (456)
T ss_pred             chhhhccCcHHHHHHHHhhccccchHHHhhHHHH-HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            4469999999999999999999999999999988 5799988999999999999999875

>PRK10746 putative transport protein YifK; Provisional

Probab=99.10  E-value=7.8e-11  Score=96.80  Aligned_cols=59  Identities=32%  Similarity=0.593  Sum_probs=54.3

Q ss_pred             ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      ++++||+|+.+|++++++|++||+|+|++++..+ +.+||+++++|+++|+++++.++|+
T Consensus         5 ~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l-~~aGp~~~l~~~i~g~~~~~v~~~~   63 (461)
T PRK10746          5 KPELQRGLEARHIELIALGGTIGVGLFMGAASTL-KWAGPSVLLAYIIAGLFVFFIMRSM   63 (461)
T ss_pred             chHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHH-HhcChHHHHHHHHHHHHHHHHHHHH
Confidence            4469999999999999999999999999999988 5899999999999999999888774

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=99.08  E-value=7.2e-11  Score=100.23  Aligned_cols=56  Identities=30%  Similarity=0.602  Sum_probs=52.8

Q ss_pred             ccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhc
Q psy6063          51 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVII  107 (108)
Q Consensus        51 ~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~  107 (108)
                      ++||+|+.+|+.||++|++||||+|+++|..+ ..+|| +++++|++.|+++++...|
T Consensus        41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l-~~aGP~g~li~y~i~G~~vy~vm~s   97 (541)
T COG0833          41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKAL-SQAGPAGLLIAYLIIGIMVYFVMQS   97 (541)
T ss_pred             hhhhhhhHHHHHHHHhccccccceeeecchhh-hccCcHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999988 58999 8999999999999988765

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.04  E-value=2.1e-10  Score=93.51  Aligned_cols=59  Identities=24%  Similarity=0.489  Sum_probs=54.7

Q ss_pred             ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      ++++||+|+.++++++++|++||+|+|+++|.++ +.+||+++++|+++++++++.++||
T Consensus         4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~-~~aG~~~~l~~~i~~i~~~~~a~~~   62 (457)
T PRK10580          4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAI-KMAGPSVLLAYIIGGVAAYIIMRAL   62 (457)
T ss_pred             CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999999999987 5799988999999999999999886

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.98  E-value=4.5e-10  Score=91.24  Aligned_cols=59  Identities=27%  Similarity=0.532  Sum_probs=54.6

Q ss_pred             ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      ..+++|+|+.+|++++++|++||+|+|++++..+ +.+||..+++|+++++++++.++||
T Consensus         7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~G~~~~i~~~i~~v~~~~~a~~~   65 (452)
T TIGR01773         7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAI-ASAGPAALLAYLLAGLLVVFIMRML   65 (452)
T ss_pred             hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999999999999988 5799988889999999999999886

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.96  E-value=4.3e-10  Score=94.05  Aligned_cols=57  Identities=26%  Similarity=0.554  Sum_probs=52.0

Q ss_pred             CccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHh
Q psy6063          48 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSV  105 (108)
Q Consensus        48 ~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~a  105 (108)
                      ++++++|.|+.+|++++++|+.||+|+|.++|... +.|||+++++|+++|+++++..
T Consensus         7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I-~~AGPSvlLaY~I~G~~~f~iM   63 (462)
T COG1113           7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAI-AMAGPSVLLAYLIAGIFVFLIM   63 (462)
T ss_pred             cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhh-hhhCcHHHHHHHHHHHHHHHHH
Confidence            35569999999999999999999999999999988 5899999999999999887753

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.84  E-value=3.3e-09  Score=86.61  Aligned_cols=55  Identities=25%  Similarity=0.474  Sum_probs=51.2

Q ss_pred             ccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063          53 ARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        53 ~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y  108 (108)
                      ||+|+.+|++++++|++||+|+|.+++.++ +.+|| +++++|+++|+++++.++||
T Consensus         1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~-~~~Gp~~~i~~~~i~~~~~~~~a~~~   56 (478)
T TIGR00913         1 KKSLKQRHIQMIALGGTIGTGLLVGSGTAL-ATGGPAGLLIGYAIMGSIIYCVMQSL   56 (478)
T ss_pred             CCCCcHHHHHHHHHhccccchhhhcchhHH-HhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999998 57999 57999999999999999886

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.79  E-value=4.7e-09  Score=85.29  Aligned_cols=55  Identities=20%  Similarity=0.376  Sum_probs=50.8

Q ss_pred             cccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      .+|+|++++++++++|++||+|+|..|+..+  .+||.++++|+++++.+++.++||
T Consensus         3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a--~~G~~~i~~wli~~~~~l~~al~~   57 (435)
T PRK10435          3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA--SIGSIAIWGWIISIIGAMSLAYVY   57 (435)
T ss_pred             CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999864  479999999999999999999986

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.79  E-value=6.8e-09  Score=84.20  Aligned_cols=59  Identities=32%  Similarity=0.631  Sum_probs=52.3

Q ss_pred             ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcC-h-HHHHHHHHHHHHHHHHhhcC
Q psy6063          49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAG-P-SVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aG-p-~~llawil~giv~l~~al~y  108 (108)
                      +++++|++++++++++++|.+||+|+|..++.++. .+| | ..+++|+++++++++.++||
T Consensus         3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~-~~G~~~~~~l~~li~~v~~l~~al~~   63 (445)
T PRK11357          3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAK-AAGTPWLTVLAFVIGGLIVIPQMCVY   63 (445)
T ss_pred             cccccccccHHHHHHHHHHhheechhccchHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            45699999999999999999999999999998774 455 4 47899999999999999986

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.76  E-value=7.5e-09  Score=85.33  Aligned_cols=60  Identities=23%  Similarity=0.454  Sum_probs=53.3

Q ss_pred             CccccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-H-HHHHHHHHHHHHHHHhhcC
Q psy6063          48 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-S-VVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        48 ~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~-~llawil~giv~l~~al~y  108 (108)
                      ++.+++|+++.++++++++|++||+|+|.+++.++ ..+|| + .+++|+++++++++.++||
T Consensus        36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~-~~~G~~g~~~~~~ii~~i~~~~~al~~   97 (501)
T TIGR00911        36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVL-KNAGSVGLALIMWAVCGIFSIVGALVY   97 (501)
T ss_pred             cccccCccccHhHhhHhheeceEEeeEeecHHHHH-hhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            44679999999999999999999999999999987 46887 3 4689999999999999886

>PRK10655 potE putrescine transporter; Provisional

Probab=98.75  E-value=9.2e-09  Score=83.14  Aligned_cols=55  Identities=25%  Similarity=0.449  Sum_probs=50.3

Q ss_pred             cccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      .+|+|++++++++++|++||+|+|..|+..+  .+||..+++|+++++++++.++||
T Consensus         4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~--~~G~~~~~~w~i~~~~~~~~a~~~   58 (438)
T PRK10655          4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA--QVGTISILSWLVTAVGSMALAYAF   58 (438)
T ss_pred             ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999998854  479988899999999999999986

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.74  E-value=1e-08  Score=83.29  Aligned_cols=58  Identities=22%  Similarity=0.450  Sum_probs=51.3

Q ss_pred             ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      +.+++|+|++++++++++|++||+|+|..++.++ . .||..+++|+++++.+++.++||
T Consensus         3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a-~-~g~~~~~~~~i~~~~~l~~al~~   60 (445)
T PRK10644          3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLA-S-TGGIAIYGWLVTIIGALGLSMVY   60 (445)
T ss_pred             CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4458899999999999999999999999999876 3 46667899999999999999886

>PRK11021 putative transporter; Provisional

Probab=98.72  E-value=1.1e-08  Score=82.29  Aligned_cols=52  Identities=23%  Similarity=0.289  Sum_probs=48.6

Q ss_pred             cChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          56 LGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        56 L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      ++.++.+++.+|+|||+|+|+++|.++ +.+||+.+++|+++++++++.++||
T Consensus         1 ~g~~~~~~l~~g~~IGsGif~~~g~~~-~~aG~~~~~~~~i~~~~~~~~al~~   52 (410)
T PRK11021          1 LGLWQGIGLLSTSLLGTGVFAVPALAA-LVAGNNSLWAWPLLILLIFPIAIVF   52 (410)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHhHHHHH-HhcCchHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999987 5799988999999999999999986

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.66  E-value=2.3e-08  Score=81.91  Aligned_cols=54  Identities=33%  Similarity=0.509  Sum_probs=49.8

Q ss_pred             cccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063          54 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        54 R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y  108 (108)
                      |++++++++++++|++||+|+|..|+..+ +.+|| +.+++|+++++.+++.++||
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~-~~ag~~~~l~~w~i~~~~~~~~al~~   55 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMA-AGAAAGAVLIGWVITGVGMLALAFSF   55 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999987 57899 57899999999999999886

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=98.65  E-value=2.6e-08  Score=81.76  Aligned_cols=56  Identities=34%  Similarity=0.627  Sum_probs=51.2

Q ss_pred             cccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063          52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y  108 (108)
                      .+|+++.++++++++|++||+|+|..++.++ ..+|| ..+++|+++++++++.++||
T Consensus         5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~-~~~g~~~~~~~wli~~~~~~~~al~~   61 (473)
T TIGR00905         5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLA-SVAGPGAVIIGWIITGVGMLALAFVF   61 (473)
T ss_pred             cCCCccHHHHHHHHHHHHHhHHHHHhHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999987 57898 57899999999999999886

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>KOG1287|consensus

Probab=98.58  E-value=1.9e-08  Score=84.77  Aligned_cols=61  Identities=23%  Similarity=0.437  Sum_probs=55.6

Q ss_pred             CCccccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh--HHHHHHHHHHHHHHHHhhcC
Q psy6063          47 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP--SVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        47 ~~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp--~~llawil~giv~l~~al~y  108 (108)
                      .+..+++|+++++..+.+.+|.+||+|||++|..+. +.+||  ..++-|+++|++++..|+||
T Consensus         5 ~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl-~~~gsvg~sL~iWv~~gi~s~~galcy   67 (479)
T KOG1287|consen    5 GEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVL-ANTGSVGLSLIIWVFCGIISIIGALCY   67 (479)
T ss_pred             cccccccceeeeecceeEEEEeeEecccccCcHHHH-HcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            445678999999999999999999999999999998 57888  46888999999999999998

>TIGR00909 2A0306 amino acid transporter

Probab=98.47  E-value=1.8e-07  Score=75.13  Aligned_cols=56  Identities=50%  Similarity=0.969  Sum_probs=51.4

Q ss_pred             cccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      ++|+++.++.+++.++.+||+|+|..++... ..+||..+++|+++++++++.++||
T Consensus         1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~-~~~G~~~~l~~li~~~~~~~~a~~~   56 (429)
T TIGR00909         1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAA-GKAGPAVILSFVLAGLTALFIALVY   56 (429)
T ss_pred             CCccccHHHHHHHHHhhhhcchHHHhHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999987 5789988899999999999988875

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.41  E-value=1.3e-07  Score=77.39  Aligned_cols=45  Identities=22%  Similarity=0.528  Sum_probs=41.3

Q ss_pred             HHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          63 MLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        63 ~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      ++++|++||+|+|+++|..+ +.+||+++++|+++|+++++.++||
T Consensus         1 ~~~ig~~IGsGif~~~g~~~-~~aG~~~ll~~~i~gi~~~~~al~~   45 (446)
T PRK10197          1 MLSIAGVIGASLFVGSSVAI-AEAGPAVLLAYLFAGLLVVMIMRML   45 (446)
T ss_pred             CeeecchhHhHHHHHhHHHH-HhcChHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999988 5799999999999999999999886

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.33  E-value=4.7e-07  Score=74.41  Aligned_cols=60  Identities=22%  Similarity=0.287  Sum_probs=54.7

Q ss_pred             CccccccccChhhHHHHhhcce-ecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          48 DAPQLARVLGLIDLTMLGVGAT-LGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        48 ~~~~l~R~L~~~~l~~l~vG~i-IGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      .+++|||+++.++..+++++.+ +++|+|.+++..+ ..+||+++++|+++++.+++.++||
T Consensus         7 ~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~-~~~Gp~~~~~~li~~i~~l~~als~   67 (475)
T TIGR03428         7 YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGY-GFGGPAFFWTWPVVFVGQLLVALNF   67 (475)
T ss_pred             CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHH
Confidence            3567999999999999999985 9999999999988 5799998999999999999999886

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00908 2A0305 ethanolamine permease

Probab=98.25  E-value=9e-07  Score=71.68  Aligned_cols=58  Identities=26%  Similarity=0.220  Sum_probs=50.4

Q ss_pred             ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063          49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y  108 (108)
                      ++++||+++.++++++++|.+|| |.|...+..+ ..+|| +.+++|+++++++++.++||
T Consensus         2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~-~~~G~~~~~~~~~i~~~~~~~~a~~~   60 (442)
T TIGR00908         2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGL-AQGGWGGFVVATLLVATMYLTFCFSL   60 (442)
T ss_pred             CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHH-HHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            55699999999999999999998 8888877766 46899 68899999999999988875

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=98.08  E-value=2.8e-06  Score=69.65  Aligned_cols=60  Identities=20%  Similarity=0.238  Sum_probs=51.1

Q ss_pred             CccccccccChhhHHHHhhcce-ecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063          48 DAPQLARVLGLIDLTMLGVGAT-LGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        48 ~~~~l~R~L~~~~l~~l~vG~i-IGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y  108 (108)
                      .+++++|+++.+++++++++.+ +.+|+|.+.+... ..+|| +++++|+++|+++++.++||
T Consensus         6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~Gp~~~i~~~~i~gi~~l~~~~~~   67 (482)
T TIGR00907         6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGL-SSGGAMSIVWGWIIAGAGSICIALSL   67 (482)
T ss_pred             CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhh-hcCCccchhHHHHHHHHHHHHHHHHH
Confidence            3556999999999999999954 2389999888776 47899 78999999999999999875

>TIGR00930 2a30 K-Cl cotransporter

Probab=97.98  E-value=4.6e-06  Score=75.09  Aligned_cols=57  Identities=12%  Similarity=0.132  Sum_probs=51.6

Q ss_pred             ccccccChhhHHHHh-hcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063          51 QLARVLGLIDLTMLG-VGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        51 ~l~R~L~~~~l~~l~-vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y  108 (108)
                      .-.+++|.+..+++. ++.|+|+|+|+.++.++. .+|+ ..++.|++++++++++++||
T Consensus        73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg-~aG~~~sll~~~la~~vtlltaLS~  131 (953)
T TIGR00930        73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVG-QAGIGLSLLIILLCCCVTTITGLSM  131 (953)
T ss_pred             CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999 999999999999999884 7898 57889999999999999997

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=97.67  E-value=2.7e-05  Score=61.37  Aligned_cols=53  Identities=21%  Similarity=0.341  Sum_probs=47.4

Q ss_pred             ccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          55 VLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        55 ~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      +++.++.+++.++.+||+|++..|+..+ +.+|+..+++++++++++++.+++|
T Consensus         2 ~is~~q~~~l~~~~~iG~gil~~P~~~~-~~a~~~~wi~~ll~~~~~~~~~~~~   54 (359)
T TIGR00912         2 KISSKQLIFLISSTMIGSGLLTLPALVS-QSAGQDGWISIILGGLIIIFLLCLM   54 (359)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHhhhHHHH-hccCCCeeHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999887 5788888899999999988887764

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.43  E-value=0.00019  Score=57.38  Aligned_cols=60  Identities=38%  Similarity=0.695  Sum_probs=49.9

Q ss_pred             CCccccccccChhh-HHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          47 SDAPQLARVLGLID-LTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        47 ~~~~~l~R~L~~~~-l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      .++.+++|+++.++ +..+.++.++|+|+|..++..+. .+ |...++|+++++++++.++||
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~-~~-~~~~~~~li~~~~~~~~a~~~   65 (466)
T COG0531           5 MMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAG-LA-PAAILAWLIAGIIILFLALSY   65 (466)
T ss_pred             ccchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHH-hc-hHHHHHHHHHHHHHHHHHHHH
Confidence            44567889999999 99999999999999999998763 44 655556999999998888775

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.29  E-value=5.2e-05  Score=62.15  Aligned_cols=48  Identities=25%  Similarity=0.575  Sum_probs=42.9

Q ss_pred             hHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063          60 DLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        60 ~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y  108 (108)
                      |++++++|++||+|+|+.++..+ ..+|| +++++|+++++++++.+.||
T Consensus         1 hv~~~~ig~~ig~g~f~~~g~~~-~~~G~~~~~la~li~~i~~~~~~~~~   49 (478)
T PF00324_consen    1 HVFMISIGGIIGTGLFLGSGFAI-AAAGPGGAPLAYLIAGIIVLLVALSL   49 (478)
T ss_pred             CEEEeeHHHHHHHHHHHHHHHHH-HhcccccchhHhHHHHHHHHhhhhhh
Confidence            45678999999999999999987 57999 88999999999999998875

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.21  E-value=0.00025  Score=56.61  Aligned_cols=50  Identities=32%  Similarity=0.555  Sum_probs=42.6

Q ss_pred             cChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHH-HHHhhcC
Q psy6063          56 LGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVIIL  108 (108)
Q Consensus        56 L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~-l~~al~y  108 (108)
                      |++++..++++|.++|+|+|..+  .+ ..+||..+++|++++++. ++.+++|
T Consensus         1 l~~~~~~~l~~~~~~g~gi~~~~--~~-~~~G~~~~~~~~i~~~~~~l~~a~~~   51 (426)
T PF13520_consen    1 LGLFSAIALVIGSIIGSGIFFSP--AA-ASAGPSAILAWIIAALLFFLPIALSY   51 (426)
T ss_dssp             B-HHHHHHHHHHCHHTTTTTTHH--HH-TCTGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH--HH-HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999988  34 468999999999999887 7888775

...

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=96.78  E-value=0.0014  Score=54.25  Aligned_cols=53  Identities=15%  Similarity=0.207  Sum_probs=41.0

Q ss_pred             cccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHH-HHHHhhcC
Q psy6063          52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVT-SLFSVIIL  108 (108)
Q Consensus        52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv-~l~~al~y  108 (108)
                      .+|+|+.+++++++++++||.+..  + ... ..+||+.++.|++++++ .++.++||
T Consensus         5 ~~~~l~~~~l~~~~~~~vig~~~~--~-~~~-~~~G~~~i~~~~i~~~~~~l~~al~~   58 (496)
T PRK15238          5 TKKKLSLIGLILMIFTSVFGFANS--P-RAF-YLMGYSAIPWYILSAILFFIPFALMM   58 (496)
T ss_pred             ccCeeeHHHHHHHHHHHHHhCCch--H-HHH-HHcChHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999999997632  3 223 35899888888888866 46788765

>TIGR00837 araaP aromatic amino acid transport protein

Probab=96.64  E-value=0.00072  Score=53.70  Aligned_cols=46  Identities=22%  Similarity=0.249  Sum_probs=35.0

Q ss_pred             HHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          62 TMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        62 ~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      +++.+|++||+|+|..|+..+ ..+++..++..+++++++++.++||
T Consensus         3 ~~lv~gt~IGaGIl~lP~~~a-~~g~~~~~~~~i~~~~~~~~~~l~~   48 (381)
T TIGR00837         3 ALIIAGTTIGAGMLALPTSTA-GAWFIWTLLLLILLWFLMLHSGLLL   48 (381)
T ss_pred             eEEeehhhHhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            357789999999999999876 4455555556677777877777765

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PHA02764 hypothetical protein; Provisional

Probab=95.76  E-value=0.015  Score=48.02  Aligned_cols=60  Identities=10%  Similarity=0.143  Sum_probs=43.6

Q ss_pred             CccccccccChhhHHHHhhcceecchhhhc-cHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          48 DAPQLARVLGLIDLTMLGVGATLGVGVYVL-AGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        48 ~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~-~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      +...|-|+.+++|.+++.++.+ |.|+-++ +-..+....|+.++++|+++|+++++.++||
T Consensus         6 eSSGLVREvs~lDAF~~Nl~~m-~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~Y   66 (399)
T PHA02764          6 KSSGIIKSFNILDIFSINLLYM-GILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMY   66 (399)
T ss_pred             hcCCceeeccHHHHHHHHHHhh-ccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence            4566999999999999999876 3444222 2222211245578899999999999999997

>KOG1289|consensus

Probab=95.73  E-value=0.0065  Score=52.42  Aligned_cols=60  Identities=18%  Similarity=0.228  Sum_probs=43.3

Q ss_pred             CCccccccccChhhHHHHhhcce-ecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhc
Q psy6063          47 SDAPQLARVLGLIDLTMLGVGAT-LGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVII  107 (108)
Q Consensus        47 ~~~~~l~R~L~~~~l~~l~vG~i-IGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~  107 (108)
                      .-++++||+++.+....++.+.+ .=.|+-.+-...+ ..+|| .++.+|+++++..+|+++|
T Consensus        41 gYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl-~~gG~~~~vwgwlIa~~~~i~va~s  102 (550)
T KOG1289|consen   41 GYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGL-GSGGPPTLVWGWLIAGFFSICVALS  102 (550)
T ss_pred             CCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeecc-ccCChHHHHHHHHHHHHHHHHHHhH
Confidence            34678999999999998888744 1134444333334 24666 8899999999999999875

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=93.49  E-value=0.16  Score=42.50  Aligned_cols=46  Identities=13%  Similarity=0.193  Sum_probs=38.4

Q ss_pred             ccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHH
Q psy6063          53 ARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAV   99 (108)
Q Consensus        53 ~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~gi   99 (108)
                      ++.+++++..+.++++.||+|-..+...+. ..+|| ++++-|+.+-+
T Consensus        16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI-~~GGPGAiFWMWi~a~~   62 (416)
T PF01235_consen   16 EGGISPFQALCTALAGTVGTGNIAGVATAI-AIGGPGAIFWMWISALL   62 (416)
T ss_pred             CCCcChHHHHHHHHHhccCcchHHHHHHHH-HhhchhHHHHHHHHHHH
Confidence            347999999999999999999999998877 58999 66777774433

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=91.89  E-value=0.26  Score=40.41  Aligned_cols=49  Identities=24%  Similarity=0.262  Sum_probs=34.1

Q ss_pred             ccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHh
Q psy6063          55 VLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSV  105 (108)
Q Consensus        55 ~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~a  105 (108)
                      +-+.+..+++..|+.||+|++..|-...  .+|. +.++..+++..+++..+
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~--~~Gf~~~~~~l~~~w~~~~~s~   51 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIATA--GAGFLPSLILLLIAWPLMYYSG   51 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHH
Confidence            3466788999999999999999998754  4775 44444444444444444

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK10483 tryptophan permease; Provisional

Probab=91.35  E-value=0.4  Score=40.10  Aligned_cols=53  Identities=15%  Similarity=0.109  Sum_probs=36.9

Q ss_pred             ccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHh
Q psy6063          51 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSV  105 (108)
Q Consensus        51 ~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~a  105 (108)
                      ..|+..+.+...++..|++||+|++-.|-..+  .+|- +.++..+++-+++..++
T Consensus         6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a--~~GF~~s~~~l~~~W~~M~~ta   59 (414)
T PRK10483          6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMS--GAWFFWSMAALIFTWFCMLHSG   59 (414)
T ss_pred             cccCCCcHHHHHHHHHHchHhHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHH
Confidence            35678899999999999999999999987654  4664 33333333444444443

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=90.90  E-value=0.4  Score=39.57  Aligned_cols=54  Identities=17%  Similarity=0.280  Sum_probs=39.2

Q ss_pred             cccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhc
Q psy6063          52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVII  107 (108)
Q Consensus        52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~  107 (108)
                      .++..+.+..+++.+|++||+|++..|-..  ..+|- ..++..++++..+.++.++
T Consensus         5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~--~~~G~~~~l~~l~i~~~~t~~s~~~   59 (415)
T COG0814           5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAF--GGGGFWPGLLLLIIAWPLTYLSLLL   59 (415)
T ss_pred             ccCCcchHHHHHHHHccccccchhhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            455667788999999999999999998864  35775 4455566666666655543

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]

Probab=90.64  E-value=0.79  Score=39.00  Aligned_cols=47  Identities=17%  Similarity=0.207  Sum_probs=39.3

Q ss_pred             cccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHH
Q psy6063          52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAV   99 (108)
Q Consensus        52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~gi   99 (108)
                      -++.+++++..+.++++.||+|-..+...+. ..+|| ++++-|+++-+
T Consensus        59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI-~~GGPGAvFWMWi~Al~  106 (452)
T COG1115          59 GKGGVSSFQALMTSLAARVGTGNIAGVATAI-ALGGPGAVFWMWIVALF  106 (452)
T ss_pred             CCCCcChHHHHHHHHHhccCcchHHHHHHHH-HcCCCccHHHHHHHHHH
Confidence            4466889999999999999999999998877 58999 67777875543

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=89.85  E-value=0.35  Score=39.79  Aligned_cols=50  Identities=14%  Similarity=0.252  Sum_probs=37.0

Q ss_pred             cccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHH-HHHhhcC
Q psy6063          54 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVIIL  108 (108)
Q Consensus        54 R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~-l~~al~y  108 (108)
                      |+|+.++++++.+.++++....  +.  . ..+||+++++|++++++. ++.++||
T Consensus         1 ~~~~~~~l~~~~~~~v~~~~~~--~~--~-a~~G~~~~~~~~i~~~~~~ip~al~~   51 (474)
T TIGR03813         1 KKLTVVTLAIMNITAVVSLRGL--PA--E-AEYGLSAAFYYLFAAIFFLVPVSLVA   51 (474)
T ss_pred             CcccHHHHHHHHHHHHHHhhcc--hH--H-HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3489999999988887654433  32  2 358999999999999876 4688775

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=89.71  E-value=0.59  Score=39.10  Aligned_cols=48  Identities=23%  Similarity=0.146  Sum_probs=32.2

Q ss_pred             ChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhh
Q psy6063          57 GLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVI  106 (108)
Q Consensus        57 ~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al  106 (108)
                      +.....++..|++||+|.+-.|-..+  .+|- +..+..++.-+++..+++
T Consensus        10 ~~~gg~~iIaGT~IGAGMLaLP~~~a--~~Gf~~s~~ll~~~w~~M~~t~L   58 (415)
T PRK09664         10 SAFWGVMVIAGTVIGGGMFALPVDLA--GAWFFWGAFILIIAWFSMLHSGL   58 (415)
T ss_pred             chhhhhHHhhhccHhHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHH
Confidence            56668999999999999999987643  4664 443444444444444443

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=89.17  E-value=0.41  Score=37.36  Aligned_cols=49  Identities=24%  Similarity=0.380  Sum_probs=38.0

Q ss_pred             ccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHh
Q psy6063          55 VLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSV  105 (108)
Q Consensus        55 ~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~a  105 (108)
                      +++.++...+.+..++|+|++..|+..+. .+| ..+++-++++++.+..+
T Consensus         1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~-~~~-d~Wi~~ll~~~~~l~~~   49 (320)
T PF03845_consen    1 KISPRQLFFLLISSIIGTGILFLPAILAE-QAG-DAWISVLLGGLIGLLLA   49 (320)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC-CcHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999874 565 55566666666555544

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>TIGR00814 stp serine transporter

Probab=85.09  E-value=0.65  Score=38.25  Aligned_cols=39  Identities=18%  Similarity=0.205  Sum_probs=26.4

Q ss_pred             HHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHH
Q psy6063          61 LTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS  104 (108)
Q Consensus        61 l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~  104 (108)
                      .+...+|.+||+|++..|...     |+..+++|++++++++..
T Consensus         8 w~~~l~gt~IGaGiL~LP~~a-----g~~G~i~~li~~l~~~pl   46 (397)
T TIGR00814         8 WMLGLYGTAIGAGVLFLPIQA-----GLGGLWVLVLMAIIAYPL   46 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHH
Confidence            456778999999999999863     232345566666554444

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>TIGR00835 agcS amino acid carrier protein

Probab=82.74  E-value=1.9  Score=36.29  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=31.7

Q ss_pred             cccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHH
Q psy6063          54 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAI   96 (108)
Q Consensus        54 R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil   96 (108)
                      ..+++++..++.+++.||+|-..+....+ ..+|| ++++-|+.
T Consensus        45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai-~~GGpGAvFWMWI~   87 (425)
T TIGR00835        45 GGVSSFQALFTSLAARVGIGNIVGVATAI-AIGGPGAVFWMWVT   87 (425)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHHHHHHHH-HhcCCCchHHHHHH
Confidence            45899999999999999999555544445 57999 55655653

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=81.13  E-value=2.9  Score=34.70  Aligned_cols=30  Identities=20%  Similarity=0.344  Sum_probs=24.9

Q ss_pred             ChhhHHHHhhcceecchhhhccHHhHHhhcCh
Q psy6063          57 GLIDLTMLGVGATLGVGVYVLAGSVARNQAGP   88 (108)
Q Consensus        57 ~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp   88 (108)
                      +.....++..|+.||+|++..|-...  .+|.
T Consensus         4 ~~~g~~~li~GTaIGAGmLaLPi~~~--~~Gf   33 (403)
T PRK15132          4 RTLGSIFIVAGTTIGAGMLAMPLAAA--GVGF   33 (403)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHH--hChH
Confidence            56778899999999999999988754  4776

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=80.43  E-value=2.1  Score=35.92  Aligned_cols=51  Identities=16%  Similarity=0.234  Sum_probs=37.1

Q ss_pred             ccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHH-HHHHhhcC
Q psy6063          53 ARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVT-SLFSVIIL  108 (108)
Q Consensus        53 ~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv-~l~~al~y  108 (108)
                      +|+|+.++++++.++.++  +++..|. .  +..|++.+.-|++++++ .++.++||
T Consensus         3 ~~~l~~~~~~~~~~~~v~--~~~~~~~-~--a~~G~~~i~~~i~~~l~~~lp~al~~   54 (507)
T TIGR00910         3 AKKLSLFGFFAITASMVL--AVYEYPT-F--ATSGFHLVFFLLLGGILWFIPVALCA   54 (507)
T ss_pred             CcEeeHHHHHHHHHHHHH--HHHhhHH-H--HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            466999999999999885  5565443 2  25788777778877775 56677764

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	9e-14
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	5e-09
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 64.6 bits (158), Expect = 9e-14
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 51  QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
              + L L +   + VG  +G  ++ + G  A   AG ++  +F ++ + +L  
Sbjct: 3   LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLV 55

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 48  DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLF 103
            +   A  +GLI +T++  GA +G GV++L  ++A    G   +  + +  + +L 
Sbjct: 2   SSDADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALG 55

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 9/54 (16%), Positives = 16/54 (29%)

Query: 50  PQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLF 103
               +      LT+LG  A     V  +        +G S+V    +  +    
Sbjct: 2   ATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFI 55

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-05
 Identities = 13/92 (14%), Positives = 24/92 (26%), Gaps = 24/92 (26%)

Query: 7   LYEALSRKKIDVGDDDVSIAEGKNPA-GGADGVGKLPLERASDAPQLARVL--------- 56
           L   +  ++           E ++          K  + R     +L + L         
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 57  ---GLIDLTMLGVGATLGVGVYVLAGSVARNQ 85
              G     +LG G T       +A  V  + 
Sbjct: 154 LIDG-----VLGSGKT------WVALDVCLSY 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.72
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.62
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.26

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.72  E-value=7.4e-09  Score=80.89  Aligned_cols=57  Identities=25%  Similarity=0.457  Sum_probs=49.6

Q ss_pred             cccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          50 PQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        50 ~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      .+.+|+++.++++++++|.+||+|+|..++..+  .+||..+++|+++++++++.++||
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~   60 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVY   60 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999998754  589988899999999999999876

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.62  E-value=1.5e-08  Score=79.30  Aligned_cols=56  Identities=20%  Similarity=0.374  Sum_probs=51.9

Q ss_pred             cccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063          52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL  108 (108)
Q Consensus        52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y  108 (108)
                      .||+++.++++++++|.+||+|+|..++..+ ..+||+++++|+++++++++.++||
T Consensus         4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~-~~~G~~~~~~~li~~~~~~~~~~~~   59 (444)
T 3gia_A            4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSY   59 (444)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHH-HHHGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999877 5799999999999999999998875

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.26  E-value=0.0002  Score=56.72  Aligned_cols=56  Identities=14%  Similarity=0.150  Sum_probs=37.6

Q ss_pred             CccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHH-HHHhhcC
Q psy6063          48 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVIIL  108 (108)
Q Consensus        48 ~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~-l~~al~y  108 (108)
                      ++++++|+++.++++++++|.++|  ++..+.  . ..+||+.++.|++++++. ++.++||
T Consensus         5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~-~~~G~~~~~~~~i~~~~~~l~~al~~   61 (511)
T 4djk_A            5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--F-ATSGFSLVFFLLLGGILWFIPVGLCA   61 (511)
T ss_dssp             -------CCCHHHHHHHTGGGGCC--GGGHHH--H-HTTTTHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccCccCccccHHHHHHHHHHHHHh--hchhHH--H-HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355689999999999999999996  454444  2 368998888888887765 4577764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00