Psyllid ID: psy6064


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
CPQKKSKKSHLTQNIINLDHPRKNTANQTQSMSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHSKQKAK
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccEEccEEEEcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHEEEEEccEEEEccccccccccccccccccccccccccccHHccccEEEEEEEccHHHHHccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHHccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccHHHHcccccccccccccccEEEEEEEccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHEEEcccccccccc
ccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHEEEccccccccccHHHHHHcHHHHHHHHHHHHHcHHHEEHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHcHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHHccc
cpqkkskkshltQNIInldhprkntanqTQSMSRLRNLYEALSrkkidvgdddvsiaegknpaggadgvgklplerasdapQLARVLGLIDLTMLGVGATLGVGVYVLAGsvarnqagpsVVISFAIAAVTSLFSvvknpnlrvlNSDVKAISNQIDSLMGNAYQKSMESLLPikssflssypdfiAPIFVAVITGLLswgasesakvnnvltfaNLGTVAIIVFSGlfrlnpanwtirreaippgvrggsggfapfgvngiVTGAAKCFFgfvgfdgiattgeetrnpkrnipLAIILSLLIVFVCYFSIAVVITMIVPyyeqnadapfpaifdrlgwpVMKWLVTVGSLFALFTAmfgaffplprILYAMSRDGLLYERLSYvssrtqtpllSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETcdsevdfvHVDTLANtykdmtredsasteltnvtdksqlniqrdknqssnqqqylsgqntgrlkfkvpwvplipclSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIdhskqkak
cpqkkskkshltqniinldhprkntanqtQSMSRLRNLYEALSRKkidvgdddvsiaegknpaggadgvGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATtgeetrnpkrNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETcdsevdfvhvDTLANtykdmtredsasteltnvtdksqlniqrdknqssnqQQYLSgqntgrlkfkVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTysidhskqkak
CPQKKSKKSHLTQNIINLDHPRKNTANQTQSMSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHSKQKAK
*********************************************************************************QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTY******************************************TGRLKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSI********
******************DHPRKNTANQTQSMSRLRNLYEALSR*******************************************GLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDE********EVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSI*HS*****
***********TQNIINLDHPRKNTANQTQSMSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQR***********LSGQNTGRLKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSI********
*****S**SHLTQNIINLDHPRKNTANQTQSMSRLRNLYEALSRK******DDV******NPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHS*****
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CPQKKSKKSHLTQNIINLDHPRKNTANQTQSMSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHSKQKAK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query568 2.2.26 [Sep-21-2011]
B5D5N9657 Low affinity cationic ami yes N/A 0.850 0.735 0.368 5e-94
P18581657 Low affinity cationic ami yes N/A 0.850 0.735 0.362 4e-92
Q6DCE8622 Low affinity cationic ami N/A N/A 0.860 0.786 0.367 8e-92
B3TP03654 Low affinity cationic ami yes N/A 0.834 0.724 0.365 2e-88
O08812619 Cationic amino acid trans no N/A 0.871 0.799 0.371 4e-88
Q8WY07619 Cationic amino acid trans yes N/A 0.667 0.612 0.414 6e-81
Q5PR34640 Low affinity cationic ami no N/A 0.859 0.762 0.343 1e-80
P52569658 Low affinity cationic ami no N/A 0.656 0.566 0.400 4e-80
P70423618 Cationic amino acid trans no N/A 0.651 0.598 0.413 9e-80
A8I499657 Low affinity cationic ami no N/A 0.628 0.543 0.421 1e-78
>sp|B5D5N9|CTR2_RAT Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus GN=Slc7a2 PE=2 SV=1 Back     alignment and function desciption
 Score =  345 bits (885), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 214/580 (36%), Positives = 314/580 (54%), Gaps = 97/580 (16%)

Query: 82  QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS--------- 132
           +L R L  +DL  LGVG+TLG GVYVLAG VA+  +GPS+V+SF IAA+ S         
Sbjct: 29  KLCRCLTTMDLIALGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASVMAGLCYAE 88

Query: 133 ---------------------LFSVVKNPNLRV-----LNSDVKAISNQIDSLMGNAYQK 166
                                L++ +   NL +      +S  +A S   D L+     +
Sbjct: 89  FGARVPKTGSAYLYTYVTVGELWAFITGWNLILSYVIGTSSVARAWSGTFDELLNKQIGQ 148

Query: 167 SMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFS 226
             ++   +  + L+ YPDF A   V ++ GLLS+G  ESA VN   T  N+  +  ++ +
Sbjct: 149 FFKTYFKMNYTGLAEYPDFFAVCLVLLLAGLLSFGVKESAWVNKFFTAINILVLLFVMVA 208

Query: 227 GLFRLNPANWTIRREAI---------PPGVRG----GSGGFAPFGVNGIVTGAAKCFFGF 273
           G  + N ANW I  E +         PP   G    G+GGF P+G  G + GAA CF+ F
Sbjct: 209 GFVKGNVANWKISEEFLKNISASAREPPSENGTSIYGAGGFMPYGFTGTLAGAATCFYAF 268

Query: 274 VGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAI 333
           VGFD IATTGEE RNP++ IP+ I+ SLL+ F+ YF ++  +T+++PYY  +  +P P  
Sbjct: 269 VGFDCIATTGEEVRNPQKAIPIGIVTSLLVCFMAYFGVSAALTLMMPYYLLDEKSPLPVA 328

Query: 334 FDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPL 393
           F+ +GW   K++V  GSL AL T++ G+ FPLPRIL+AM+RDGLL+  L+ VS R Q+P+
Sbjct: 329 FEYVGWGPAKYVVAAGSLCALSTSLLGSMFPLPRILFAMARDGLLFRFLARVSKR-QSPV 387

Query: 394 LSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLR-----------YSGD 442
            +T  +GVI+AVM+ +F L  LVDMMSIGTL+AY +VA CVL+LR           Y+ +
Sbjct: 388 AATMTAGVISAVMAFLFDLKALVDMMSIGTLMAYSLVAACVLILRYQPGLCYEQPKYTPE 447

Query: 443 EVVVETC-------DSEVDFVH-----VDTLANTYKDMTREDSASTE------------L 478
           + ++E+C       +S+V  +      + TL N     TR+ ++               L
Sbjct: 448 KDILESCTNATSKSESQVTMLQGQGFSLRTLFNPSALPTRQSASLVSFLVGFLAFLIAGL 507

Query: 479 TNVTDKSQLNIQRDKNQSSNQQQ-------------YLSGQNTGRLKFKVPWVPLIPCLS 525
           + +T      I R +  S                  +   QN  ++ F VP++P +P  S
Sbjct: 508 SILTTYGVQAIARLEAWSLALLALFLVLCAAVILTIWRQPQNQQKVAFMVPFLPFLPAFS 567

Query: 526 MFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHSKQ 565
           + +NIYLM+ L   TWVRF +W+VLG ++YF Y I HS +
Sbjct: 568 ILVNIYLMVQLSADTWVRFSIWMVLGFLIYFAYGIRHSLE 607




Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.
Rattus norvegicus (taxid: 10116)
>sp|P18581|CTR2_MOUSE Low affinity cationic amino acid transporter 2 OS=Mus musculus GN=Slc7a2 PE=1 SV=3 Back     alignment and function description
>sp|Q6DCE8|CTR2_XENLA Low affinity cationic amino acid transporter 2 OS=Xenopus laevis GN=slc7a2 PE=2 SV=1 Back     alignment and function description
>sp|B3TP03|CTR2_CHICK Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1 Back     alignment and function description
>sp|O08812|CTR3_RAT Cationic amino acid transporter 3 OS=Rattus norvegicus GN=Slc7a3 PE=2 SV=1 Back     alignment and function description
>sp|Q8WY07|CTR3_HUMAN Cationic amino acid transporter 3 OS=Homo sapiens GN=SLC7A3 PE=1 SV=1 Back     alignment and function description
>sp|Q5PR34|CTR2_DANRE Low affinity cationic amino acid transporter 2 OS=Danio rerio GN=slc7a2 PE=2 SV=1 Back     alignment and function description
>sp|P52569|CTR2_HUMAN Low affinity cationic amino acid transporter 2 OS=Homo sapiens GN=SLC7A2 PE=1 SV=2 Back     alignment and function description
>sp|P70423|CTR3_MOUSE Cationic amino acid transporter 3 OS=Mus musculus GN=Slc7a3 PE=2 SV=1 Back     alignment and function description
>sp|A8I499|CTR2_PIG Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
332017888603 High affinity cationic amino acid transp 0.892 0.840 0.427 1e-131
322801571603 hypothetical protein SINV_08605 [Solenop 0.887 0.835 0.444 1e-131
380019347602 PREDICTED: LOW QUALITY PROTEIN: high aff 0.875 0.825 0.418 1e-127
195019317610 GH16777 [Drosophila grimshawi] gi|193898 0.859 0.8 0.464 1e-125
194876456606 GG16286 [Drosophila erecta] gi|190655562 0.853 0.800 0.451 1e-123
195440792609 GK12893 [Drosophila willistoni] gi|19416 0.848 0.791 0.451 1e-122
195348864606 GM22479 [Drosophila sechellia] gi|194122 0.890 0.834 0.427 1e-122
328715011614 PREDICTED: high affinity cationic amino 0.899 0.832 0.433 1e-122
383853355603 PREDICTED: high affinity cationic amino 0.885 0.834 0.416 1e-122
21356285604 slimfast, isoform C [Drosophila melanoga 0.890 0.837 0.425 1e-122
>gi|332017888|gb|EGI58548.1| High affinity cationic amino acid transporter 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/601 (42%), Positives = 365/601 (60%), Gaps = 94/601 (15%)

Query: 38  LYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGV 97
           L++ALSR++I++ ++D                        ++  +LARVLGL DLT LGV
Sbjct: 5   LWKALSRRRIELENED------------------------TNGERLARVLGLFDLTALGV 40

Query: 98  GATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS----------VVKNPNLRVLN- 146
           GATLG+GVYVLAGSVA+  AGP+V +SF IAA+ S F+          V K  +  V + 
Sbjct: 41  GATLGLGVYVLAGSVAKETAGPAVSVSFLIAAIASAFAGLCYAEFASRVPKAGSAYVYSY 100

Query: 147 ------------------------SDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSY 182
                                   S  + +S+ ID+L+GN    ++ SL+PI  SFLS Y
Sbjct: 101 VTVGEFIAFVIGWNLILEYVIGTASVARGLSSYIDALIGNVMGNALRSLMPIDVSFLSEY 160

Query: 183 PDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREA 242
           PDF A   V ++  LL  G  ES+ +NN+ T  NL T+ I++ +G  + NP+NW+I  E 
Sbjct: 161 PDFFAFAMVMLLVVLLCIGVKESSILNNIFTVINLITITIVIVAGSMKANPSNWSIAPED 220

Query: 243 IPPGVR-GGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSL 301
           IP  V+ GG+GGF PFG+NG++ GAAKCF+GFVGFD +ATTGEE +NP+R+IPLA++LSL
Sbjct: 221 IPDTVKNGGTGGFMPFGMNGVMVGAAKCFYGFVGFDAVATTGEEAKNPQRHIPLAVVLSL 280

Query: 302 LIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGA 361
           +++F+ YF +++V+TM++PYY Q+ADAPFP  FD +GWPV+KW+V +G++FAL T++ GA
Sbjct: 281 IVIFIAYFGVSIVLTMMLPYYAQSADAPFPHAFDEIGWPVVKWIVNIGAIFALCTSLLGA 340

Query: 362 FFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSI 421
            FPLPR+LYAM+ DG++++ LS V  +T TP+  T LSG++  +M+ +F L QL+DMMSI
Sbjct: 341 MFPLPRVLYAMASDGIIFKTLSTVHPKTMTPIYGTVLSGLLIGLMTLIFNLQQLIDMMSI 400

Query: 422 GTLLAYIIVAICVLLLRYSGDE------VVVETCDSEVDFVHVDTLANTYKDMTREDSAS 475
           GTLLAY IVAICVL+LRY  +E      V++ T + ++  V++       ++       S
Sbjct: 401 GTLLAYTIVAICVLILRYQKEENSSNVSVILPTSNYQLTPVNIFKELFNLQNRKEPTELS 460

Query: 476 TELTNV-TDKSQLNIQRDKNQSSNQQQYLSGQN--------------------TGR---- 510
            ++ NV      + I       SN   +L   N                     GR    
Sbjct: 461 NKIANVGIAFLCIIICIITFLISNMGAHLLAGNMVISVTLSALAIVLFLNLAAIGRQPVQ 520

Query: 511 ---LKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHSKQKA 567
              L FKVP VPLIPCLS+F+N YLM+ LDV TW+RF  WL++G  +Y  Y I HS+Q  
Sbjct: 521 KTELSFKVPLVPLIPCLSIFINTYLMLQLDVFTWIRFATWLLIGFCIYGFYGIVHSEQGK 580

Query: 568 K 568
           +
Sbjct: 581 R 581




Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801571|gb|EFZ22227.1| hypothetical protein SINV_08605 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|380019347|ref|XP_003693571.1| PREDICTED: LOW QUALITY PROTEIN: high affinity cationic amino acid transporter 1-like [Apis florea] Back     alignment and taxonomy information
>gi|195019317|ref|XP_001984955.1| GH16777 [Drosophila grimshawi] gi|193898437|gb|EDV97303.1| GH16777 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|194876456|ref|XP_001973779.1| GG16286 [Drosophila erecta] gi|190655562|gb|EDV52805.1| GG16286 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195440792|ref|XP_002068224.1| GK12893 [Drosophila willistoni] gi|194164309|gb|EDW79210.1| GK12893 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|195348864|ref|XP_002040967.1| GM22479 [Drosophila sechellia] gi|194122477|gb|EDW44520.1| GM22479 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|328715011|ref|XP_001942513.2| PREDICTED: high affinity cationic amino acid transporter 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383853355|ref|XP_003702188.1| PREDICTED: high affinity cationic amino acid transporter 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|21356285|ref|NP_649428.1| slimfast, isoform C [Drosophila melanogaster] gi|24668802|ref|NP_730764.1| slimfast, isoform A [Drosophila melanogaster] gi|24668806|ref|NP_730765.1| slimfast, isoform B [Drosophila melanogaster] gi|7296598|gb|AAF51880.1| slimfast, isoform B [Drosophila melanogaster] gi|7296599|gb|AAF51881.1| slimfast, isoform A [Drosophila melanogaster] gi|7296600|gb|AAF51882.1| slimfast, isoform C [Drosophila melanogaster] gi|20151635|gb|AAM11177.1| LD37241p [Drosophila melanogaster] gi|220946138|gb|ACL85612.1| slif-PA [synthetic construct] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query568
FB|FBgn0036764633 CG5535 [Drosophila melanogaste 0.519 0.466 0.464 2.8e-111
FB|FBgn0037203604 slif "slimfast" [Drosophila me 0.718 0.675 0.453 5e-108
UNIPROTKB|Q8WY07619 SLC7A3 "Cationic amino acid tr 0.522 0.479 0.444 4.4e-105
ZFIN|ZDB-GENE-041114-206644 slc7a3a "solute carrier family 0.688 0.607 0.399 1.2e-104
FB|FBgn0036493 1063 CG7255 [Drosophila melanogaste 0.672 0.359 0.405 3.6e-104
UNIPROTKB|F1MUG8619 SLC7A3 "Uncharacterized protei 0.521 0.478 0.442 2.7e-103
UNIPROTKB|E1BCX7626 LOC504861 "Uncharacterized pro 0.517 0.469 0.452 1.7e-101
RGD|68342619 Slc7a3 "solute carrier family 0.552 0.507 0.429 3.4e-101
UNIPROTKB|I3LN75619 SLC7A3 "Uncharacterized protei 0.522 0.479 0.435 5.6e-101
ZFIN|ZDB-GENE-080219-39613 zgc:175280 "zgc:175280" [Danio 0.535 0.495 0.445 7.1e-101
FB|FBgn0036764 CG5535 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 767 (275.1 bits), Expect = 2.8e-111, Sum P(3) = 2.8e-111
 Identities = 138/297 (46%), Positives = 210/297 (70%)

Query:   147 SDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESA 206
             S VK +S  +D L GN     + + +P+    + +YPD  A +   + +  ++ GA ES 
Sbjct:   138 SVVKGLSTYLDQLCGNPMSSFLGTHMPLNIEGMGAYPDLFAFVVTILFSLAIAVGAKEST 197

Query:   207 KVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGA 266
             +VNNV T  NLG V  ++ +GLF+++ +NW+I +  +P G   G GGF P+GV+GI+ GA
Sbjct:   198 RVNNVFTMLNLGVVLFVIIAGLFKVSSSNWSIPKSQVPEGY--GDGGFMPYGVSGIIKGA 255

Query:   267 AKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNA 326
             A CF+GF+GFD IAT GEE +NPK++IP A+I+SL ++F+ YF ++ V+TM++PY+EQ+ 
Sbjct:   256 AVCFYGFIGFDCIATAGEEAKNPKKSIPFAVIVSLAMIFLAYFGVSTVLTMMLPYFEQDE 315

Query:   327 DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVS 386
              AP P +F   GW V +++V++G++F L ++M GA FPLPRI++AMS DGLL++ L  +S
Sbjct:   316 KAPLPHVFRINGWHVAEYVVSIGAMFGLCSSMMGAMFPLPRIVFAMSNDGLLFKFLGDIS 375

Query:   387 SRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDE 443
              + +TP   T ++G++T +++AVF L QLV+MMSIGTLLAY +VA CVL+LRY  D+
Sbjct:   376 EKYKTPFKGTMITGMLTGILAAVFNLSQLVNMMSIGTLLAYSMVASCVLMLRYEVDD 432


GO:0006865 "amino acid transport" evidence=ISS
GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0003333 "amino acid transmembrane transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
FB|FBgn0037203 slif "slimfast" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WY07 SLC7A3 "Cationic amino acid transporter 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-206 slc7a3a "solute carrier family 7 (cationic amino acid transporter, y+ system), member 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0036493 CG7255 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1MUG8 SLC7A3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCX7 LOC504861 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|68342 Slc7a3 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LN75 SLC7A3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080219-39 zgc:175280 "zgc:175280" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B5D5N9CTR2_RATNo assigned EC number0.36890.85030.7351yesN/A
B3TP03CTR2_CHICKNo assigned EC number0.36560.83450.7247yesN/A
P18581CTR2_MOUSENo assigned EC number0.36200.85030.7351yesN/A
Q8WY07CTR3_HUMANNo assigned EC number0.41410.66720.6122yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
TIGR00906557 TIGR00906, 2A0303, cationic amino acid transport p 1e-127
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 7e-45
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 1e-44
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 1e-26
pfam1390651 pfam13906, AA_permease_C, C-terminus of AA_permeas 2e-22
pfam00324473 pfam00324, AA_permease, Amino acid permease 4e-19
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 3e-18
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 1e-17
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 2e-15
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 1e-14
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 2e-14
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 2e-14
PRK11021410 PRK11021, PRK11021, putative transporter; Provisio 7e-13
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 4e-12
PRK10249458 PRK10249, PRK10249, phenylalanine transporter; Pro 7e-12
TIGR00913478 TIGR00913, 2A0310, amino acid permease (yeast) 2e-10
PRK10197446 PRK10197, PRK10197, gamma-aminobutyrate transporte 4e-10
PRK10238456 PRK10238, PRK10238, aromatic amino acid transporte 9e-10
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 3e-09
PRK11387471 PRK11387, PRK11387, S-methylmethionine transporter 5e-09
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 2e-08
PRK15049499 PRK15049, PRK15049, L-asparagine permease; Provisi 3e-08
PRK11049469 PRK11049, PRK11049, D-alanine/D-serine/glycine per 3e-08
PRK10836489 PRK10836, PRK10836, lysine transporter; Provisiona 2e-07
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 1e-06
PRK10580457 PRK10580, proY, putative proline-specific permease 1e-06
TIGR04298429 TIGR04298, his_histam_anti, histidine-histamine an 1e-06
TIGR00910507 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr 7e-05
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 2e-04
PRK10655438 PRK10655, potE, putrescine transporter; Provisiona 3e-04
TIGR04299430 TIGR04299, antiport_PotE, putrescine-ornithine ant 8e-04
PRK10644445 PRK10644, PRK10644, arginine:agmatin antiporter; P 0.003
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information
 Score =  383 bits (984), Expect = e-127
 Identities = 196/549 (35%), Positives = 298/549 (54%), Gaps = 81/549 (14%)

Query: 82  QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSV----- 136
           ++ R L   DL  LG+G+T+G G+YVL G VARN +GP++V+SF I+ + ++ S      
Sbjct: 25  KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAE 84

Query: 137 --VKNPN-------LRVLNSDV---------------------KAISNQIDSLMGNAYQK 166
              + P          V   ++                     ++ S   D L+     +
Sbjct: 85  FGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQ 144

Query: 167 SMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFS 226
              +   +    L+ YPDF A   + ++  LLS+G  ESA VN + T  N+  +  ++ +
Sbjct: 145 FRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIA 204

Query: 227 GLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEET 286
           G  + + ANW+I  E        G+GGF P+G  G+++GAA CFF F+GFD IATTGEE 
Sbjct: 205 GFTKADVANWSITEEK-------GAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV 257

Query: 287 RNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLV 346
           +NP+R IP+ I+ SLL+ FV YF ++  +T+++PYY  + DAPFP  F+ +GW   K++V
Sbjct: 258 KNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIV 317

Query: 347 TVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVM 406
            VG+L  + T++ G  FPLPR++YAM+RDGLL++ L+ ++S+T+TP+ +T +SG I A+M
Sbjct: 318 AVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALM 377

Query: 407 SAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVV--------VETCDSEVDFVHV 458
           + +F L  LVD++SIGTLLAY +VA CVL+LRY    V          +T DS V F   
Sbjct: 378 AFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSK 437

Query: 459 D---------------------TLANTYKD-MTREDSASTELTNVTDKSQLNIQRDKNQS 496
                                  L    +  +  E  +   LT       L +     Q 
Sbjct: 438 SESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQP 497

Query: 497 SNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYF 556
            N+Q         ++ FKVP VP +P LS+ +NI+LM+ LD  TWVRF +W+ +G ++YF
Sbjct: 498 QNKQ---------KVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYF 548

Query: 557 TYSIDHSKQ 565
            Y I HS +
Sbjct: 549 LYGIRHSLE 557


[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) Back     alignment and domain information
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional Back     alignment and domain information
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional Back     alignment and domain information
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter Back     alignment and domain information
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional Back     alignment and domain information
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 568
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
KOG1287|consensus479 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
KOG1289|consensus550 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
KOG1286|consensus554 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
KOG2082|consensus 1075 99.89
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.88
KOG1288|consensus 945 99.86
KOG2083|consensus 643 99.77
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.73
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.72
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.39
PHA02764399 hypothetical protein; Provisional 99.38
TIGR00814397 stp serine transporter. The HAAAP family includes 99.27
PF1390651 AA_permease_C: C-terminus of AA_permease 99.24
PRK10483414 tryptophan permease; Provisional 99.24
PRK09664415 tryptophan permease TnaB; Provisional 99.21
PRK15132403 tyrosine transporter TyrP; Provisional 99.13
COG0814415 SdaC Amino acid permeases [Amino acid transport an 98.98
PF03845320 Spore_permease: Spore germination protein; InterPr 98.92
PRK13629443 threonine/serine transporter TdcC; Provisional 98.69
PRK11375484 allantoin permease; Provisional 98.57
KOG1303|consensus437 98.44
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 98.42
KOG1304|consensus449 98.38
COG1457442 CodB Purine-cytosine permease and related proteins 98.23
PLN03074473 auxin influx permease; Provisional 98.22
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.09
PTZ00206467 amino acid transporter; Provisional 98.08
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.07
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 98.0
PRK11017404 codB cytosine permease; Provisional 97.9
COG3949349 Uncharacterized membrane protein [Function unknown 97.8
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.78
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.52
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 97.32
PRK10484523 putative transporter; Provisional 97.13
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.12
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 97.1
TIGR00813407 sss transporter, SSS family. have different number 97.07
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 96.99
PRK15433439 branched-chain amino acid transport system 2 carri 96.82
COG0733439 Na+-dependent transporters of the SNF family [Gene 96.51
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 96.34
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 96.29
KOG1305|consensus411 96.21
COG0591493 PutP Na+/proline symporter [Amino acid transport a 96.02
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.88
PLN00148 785 potassium transporter; Provisional 95.87
PLN00149 779 potassium transporter; Provisional 95.84
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 95.79
PRK00701439 manganese transport protein MntH; Reviewed 95.7
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 95.68
PRK12488549 acetate permease; Provisional 95.63
PLN00151 852 potassium transporter; Provisional 95.58
PLN00150 779 potassium ion transporter family protein; Provisio 95.54
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 95.38
PRK10745 622 trkD potassium transport protein Kup; Provisional 95.32
PRK15419502 proline:sodium symporter PutP; Provisional 94.95
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 94.83
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 94.1
PRK09395551 actP acetate permease; Provisional 93.65
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 92.99
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 91.19
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 90.98
COG3158 627 Kup K+ transporter [Inorganic ion transport and me 87.81
PRK09950506 putative transporter; Provisional 86.67
COG1292537 BetT Choline-glycine betaine transporter [Cell env 84.55
KOG2466|consensus572 80.54
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
Probab=100.00  E-value=9.6e-61  Score=518.78  Aligned_cols=495  Identities=39%  Similarity=0.715  Sum_probs=388.3

Q ss_pred             HHHHHHhhhcccCCCCCccccccCCCCCCCCCCCCCCccccCCCccccccccChhHHHHHhhcccccchhhhhhhHhHhh
Q psy6064          36 RNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARN  115 (568)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~  115 (568)
                      .+.++++.|||+.++                         ++.++++++|+++++|++++++|.++|+|+|..++.++.+
T Consensus         4 ~~~~~~~~r~k~~~~-------------------------~~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~   58 (557)
T TIGR00906         4 LTFARCLIRRKIVDL-------------------------DSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARN   58 (557)
T ss_pred             HHHHHHHhccCCccc-------------------------ccccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHh
Confidence            456778899998711                         0122346999999999999999999999999999998767


Q ss_pred             hcChhHHHHHHHHHHHHHHhhhcc-------cchh----h-------HHHHHHHHHHHHHHhhhhHHH-----HHHHHhc
Q psy6064         116 QAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V-------LNSDVKAISNQIDSLMGNAYQ-----KSMESLL  172 (568)
Q Consensus       116 ~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y-------~~~~~~~w~~~l~~~~~~~~~-----~~~~~~~  172 (568)
                      .+||+++++|+++++.+++.+++|       |.-+    |       ..+|..||..++.+..+.+..     .|+...+
T Consensus        59 ~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll  138 (557)
T TIGR00906        59 DSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELL  138 (557)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999       5222    2       789999999998887654332     2222221


Q ss_pred             c-----c-------cCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccc
Q psy6064         173 P-----I-------KSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRR  240 (568)
Q Consensus       173 ~-----~-------~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~  240 (568)
                      .     +       ..++...+..+++++++++++.+|.+|+|.++++|++++.+|++.++++++.++...+.+||....
T Consensus       139 ~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~  218 (557)
T TIGR00906       139 NKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITE  218 (557)
T ss_pred             hhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccc
Confidence            1     0       111122345677888888899999999999999999999999999999999998877666664321


Q ss_pred             cCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy6064         241 EAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVP  320 (568)
Q Consensus       241 ~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p  320 (568)
                      .       .+.+++.|.|+.+++.++..++|+|.|||.+++++||+|||+|++|||++.++.+++++|++.++++...+|
T Consensus       219 ~-------~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp  291 (557)
T TIGR00906       219 E-------KGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMP  291 (557)
T ss_pred             c-------ccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            1       122346788888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHHHHH
Q psy6064         321 YYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSG  400 (568)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~  400 (568)
                      +++.+.++|+..+++..+.++...++.++++++.+++.++.+++.+|++|+|||||.+|++|+|+|||+++|++|+++.+
T Consensus       292 ~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~  371 (557)
T TIGR00906       292 YYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSG  371 (557)
T ss_pred             HHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHH
Confidence            98888888999999888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCCcccccchhcccccCCCCCcccccccchhh
Q psy6064         401 VITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTN  480 (568)
Q Consensus       401 ~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (568)
                      +++.++.++.+++.+.++.+++.++.|.+++++++++|++++.+.+ .+.+.+|+.. ++..++.....+....-. ..-
T Consensus       372 iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~  448 (557)
T TIGR00906       372 AIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYG-QAKDTDEKDT-LDSWVPFTSKSESQSEGF-SLR  448 (557)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-cccccccccc-ccccccccccccccccch-hHH
Confidence            9999999888999999999999999999999999999988754322 1111111110 000000000000000000 000


Q ss_pred             hhHHHHhhhhcc---------cccccceEE-------------EEe--cCCCCCCCccccccchhHHHHHHHHHHHHhcC
Q psy6064         481 VTDKSQLNIQRD---------KNQSSNQQQ-------------YLS--GQNTGRLKFKVPWVPLIPCLSMFMNIYLMINL  536 (568)
Q Consensus       481 ~~~~~~~~~~~~---------~~~~~~~~~-------------~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~  536 (568)
                      .+++..+...|+         ..+||.+++             .++  ||.+.+|+||+|++|++|+++++.|+++|.++
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l  528 (557)
T TIGR00906       449 TLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQL  528 (557)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcC
Confidence            001111111111         123332222             123  66666999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy6064         537 DVSTWVRFLVWLVLGMVVYFTYSIDHSKQ  565 (568)
Q Consensus       537 ~~~~~~~~~~~~~~g~~~y~~~~~~~~~~  565 (568)
                      ++.+|.++.+|+++|+++|+.|++||+++
T Consensus       529 ~~~~~~~~~~w~~~g~~~y~~yg~~~s~~  557 (557)
T TIGR00906       529 DADTWVRFAIWMAIGFLIYFLYGIRHSLE  557 (557)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence            99999999999999999999999999974



>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>KOG1287|consensus Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>KOG1289|consensus Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>KOG1286|consensus Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG2082|consensus Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG1288|consensus Back     alignment and domain information
>KOG2083|consensus Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG1303|consensus Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG1304|consensus Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>KOG1305|consensus Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG2466|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
3gi9_C444 Crystal Structure Of Apct Transporter Bound To 7f11 1e-11
3gi8_C444 Crystal Structure Of Apct K158a Transporter Bound T 2e-11
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure

Iteration: 1

Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 71/266 (26%), Positives = 128/266 (48%), Gaps = 41/266 (15%) Query: 191 VAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGG 250 VA T L +G+ + + L + + +F+GL ++P+ IP Sbjct: 133 VAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPS------YVIPD----- 181 Query: 251 SGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFS 310 AP V+G++ +A F ++GF I E NPK+N+P AI +S+LIV Y Sbjct: 182 ---LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVG 238 Query: 311 IAVVITMIVPYYE-----QNADA----PFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGA 361 +A+ +P E +NA A PF LG+ L+++G+LF++ +AM Sbjct: 239 VAISAIGNLPIDELIKASENALAVAAKPF---LGNLGF----LLISIGALFSISSAMNAT 291 Query: 362 FFPLPRILYAMSRDGLL---YERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDM 418 + + Y++++DG L +ER + S T+ +++AL GV+ A++ F ++ + + Sbjct: 292 IYGGANVAYSLAKDGELPEFFERKVWFKS-TEGLYITSAL-GVLFALL---FNMEGVASI 346 Query: 419 MSIGTLLAYIIVAICVLLLRYSGDEV 444 S ++ Y+ V + +L DEV Sbjct: 347 TSAVFMVIYLFVILSHYILI---DEV 369
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query568
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 5e-75
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 3e-14
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 1e-57
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 2e-05
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 5e-46
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
 Score =  244 bits (625), Expect = 5e-75
 Identities = 52/260 (20%), Positives = 108/260 (41%), Gaps = 18/260 (6%)

Query: 182 YPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRRE 241
                    VA  T L  +G+    +    +    L  + + +F+GL  ++P+       
Sbjct: 124 NIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIP--- 180

Query: 242 AIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSL 301
                        AP  V+G++  +A  F  ++GF  I    E   NPK+N+P AI +S+
Sbjct: 181 -----------DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229

Query: 302 LIVFVCYFSIAVVITMIVPYYE--QNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMF 359
           LIV   Y  +A+     +P  E  + ++             +   L+++G+LF++ +AM 
Sbjct: 230 LIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMN 289

Query: 360 GAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMM 419
              +    + Y++++DG L E          T      ++  +  + + +F ++ +  + 
Sbjct: 290 ATIYGGANVAYSLAKDGELPEFFERKVWFKSTE--GLYITSALGVLFALLFNMEGVASIT 347

Query: 420 SIGTLLAYIIVAICVLLLRY 439
           S   ++ Y+ V +   +L  
Sbjct: 348 SAVFMVIYLFVILSHYILID 367


>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.74
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.23
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 96.96
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 96.43
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=3.3e-45  Score=389.99  Aligned_cols=403  Identities=18%  Similarity=0.214  Sum_probs=329.5

Q ss_pred             cccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h-----
Q psy6064          81 PQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V-----  144 (568)
Q Consensus        81 ~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y-----  144 (568)
                      +++||+++++++++++++.++|+|+|..++.+.  .+||..+++|+++++++++.+++|       |+-+    |     
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~   81 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF   81 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence            356799999999999999999999999988743  468888999999999999999998       5332    2     


Q ss_pred             --HHHHHHHHHHHHHHhhhhHHHHHHHHh-ccccCCCC--CcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q psy6064         145 --LNSDVKAISNQIDSLMGNAYQKSMESL-LPIKSSFL--SSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGT  219 (568)
Q Consensus       145 --~~~~~~~w~~~l~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~  219 (568)
                        ..++..+|.+++.+....+........ .....+..  +.+..+++++++++++.+|++|+|..++++.+++.++++.
T Consensus        82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~  161 (445)
T 3l1l_A           82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIP  161 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence              789999999999877655433222211 11111111  1234567888889999999999999999999999999999


Q ss_pred             HHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHH
Q psy6064         220 VAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL  299 (568)
Q Consensus       220 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~  299 (568)
                      ++++++.++...+.+++....        +..+   ..++.+++.++...+|+|.|+|.+++++||+|||+|++|||+..
T Consensus       162 ~~~~~i~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~  230 (445)
T 3l1l_A          162 IVGIAVFGWFWFRGETYMAAW--------NVSG---LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIG  230 (445)
T ss_dssp             HHHHHHTTSTTCCCCCCCCC----------------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChhhccccc--------CccC---CccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHH
Confidence            988888887765443322110        0001   11255688999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCcC-CCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCcc
Q psy6064         300 SLLIVFVCYFSIAVVITMIVPYYEQN-ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLL  378 (568)
Q Consensus       300 s~~~~~v~y~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~l  378 (568)
                      +..++.++|++.+++.....|+++.. .++|+.++++..+++++..++.+.++++.+++.++.+++.+|++++|||||.+
T Consensus       231 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~l  310 (445)
T 3l1l_A          231 GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLF  310 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999988764 46799999999888889999999999999999999999999999999999999


Q ss_pred             chhhhccCCCCccchHHHHHHHHHHHHHHHH-------hcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCC
Q psy6064         379 YERLSYVSSRTQTPLLSTALSGVITAVMSAV-------FKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDS  451 (568)
Q Consensus       379 P~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~-------~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~  451 (568)
                      |++|+|+| |+++|+++++++++++.++.+.       ..++.+.++.++..++.|.+++++.+++|+|+|         
T Consensus       311 P~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~---------  380 (445)
T 3l1l_A          311 PPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF---------  380 (445)
T ss_dssp             CGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS---------
T ss_pred             cHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc---------
Confidence            99999999 5799999999999988776654       248999999999999999999999999988763         


Q ss_pred             cccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHH
Q psy6064         452 EVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIY  531 (568)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  531 (568)
                                                                                 + .|.|..++++.++.+.+++
T Consensus       381 -----------------------------------------------------------~-~r~~~~~~~~~~~~~~~~~  400 (445)
T 3l1l_A          381 -----------------------------------------------------------G-KARPAYLAVTTIAFLYCIW  400 (445)
T ss_dssp             -----------------------------------------------------------G-GGCTTTHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------------------c-cccchhHHHHHHHHHHHHH
Confidence                                                                       1 1346778999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy6064         532 LMINLDVSTWVRFLVWLVLGMVVYFTYSIDHSKQK  566 (568)
Q Consensus       532 l~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~  566 (568)
                      ++...++..+....+|+++|+++|+.+++|+++++
T Consensus       401 ~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~  435 (445)
T 3l1l_A          401 AVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNP  435 (445)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence            99999999999999999999999998877766533



>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query568
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 93.43
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]
Probab=93.43  E-value=4.2  Score=40.28  Aligned_cols=52  Identities=15%  Similarity=0.287  Sum_probs=35.5

Q ss_pred             ChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHH----HHHHHHHhhhcc
Q psy6064          88 GLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAI----AAVTSLFSVVKN  139 (568)
Q Consensus        88 ~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li----~~v~~~~~a~~~  139 (568)
                      +..+.+.-++|..+|.|-+...+....++||..-++.+++    .++..+...++.
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~l   61 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAM   61 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677788888999999999988888888765555544    344444444444