Psyllid ID: psy6067

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580----
MWLSNFLDALSRKKSSYSEDAYDDGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQKLTKLA
ccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHccccEEcccEEEEHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHEEEEEccEEEEcccccccccccccccccccccccccccHHHHccccEEEEEEEccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccc
cHHHHHHHHHHccccccccHccccccccccHHHHHHcHHHHHHHcccHHHcccEEEEHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccccccccccccHHHHHccHHHEHEEEcccEEEcccHHccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcc
MWLSNFLDALSRkkssysedayddgsgsrEKLARVLgltdltllgigaTLGVGVYVLAGsvaknqagpsVVISFIIAALASALSGLCYVEFASRisksgsaynytYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLesgggetstlttdrysflstyPDFIAAGIVMLMSALISWGvsestrlnsvFTFLNLGTVVVIVGSglfkmnprnwairkediprtvrhggtggfapfglnGIIVGAAKCFFGFVGFDCiattgeesknpkrdiplsILLSLFIVFVCYLAIAIVLTLIIpyyeqdaeapfphifdslgwpVMKWLVTVGSLFALLTAMFgalfplprILYAMSLDGLLYDcfsyvsprtktpvlSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRysedgadtpikgtscaeketksssfaekdinaknfsvnalpeetldpnsqsaltggpvptsdctsALQYATFTLLGLVYTVVFVCLARQNQNrarlkfkvpwvplvpclsiFMNIYLMINLDISTWVRFVIWLVIGFGIYFTygishskqkltkla
MWLSNFLDALSrkkssysedayddgsgsrEKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQlesgggetstlttdrysFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGsglfkmnprnwairkediprtvRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATtgeesknpkrDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYSEdgadtpikgtscaeketksssfaekdiNAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQnrarlkfkvpwvPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTygishskqkltkla
MWLSNFLDALSRKKSSYSEDAYDDGSGSREKLARvlgltdltllgigatlgvgvYVLAGSVAKNQAGPsvvisfiiaalasalsGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQlesgggetstlttDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQKLTKLA
*******************************LARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTG*******RDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYSE**********************************************************DCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGIS**********
*W**N**DALSRKKS*******************VLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRY***************EKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGIS**********
MWLSNFLDALSR******************KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYSEDGADTPIKG***********SFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQKLTKLA
****NFL****R***S************REKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYSED****************************KNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISH*********
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
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MWLSNFLDALSRKKSSYSEDAYDDGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQKLTKLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query584 2.2.26 [Sep-21-2011]
P52569658 Low affinity cationic ami yes N/A 0.907 0.805 0.412 1e-118
Q09143622 High affinity cationic am no N/A 0.940 0.882 0.410 1e-117
P30825629 High affinity cationic am no N/A 0.940 0.872 0.408 1e-117
B5D5N9657 Low affinity cationic ami yes N/A 0.952 0.846 0.415 1e-115
B3TP03654 Low affinity cationic ami no N/A 0.952 0.850 0.411 1e-115
P30823624 High affinity cationic am no N/A 0.940 0.879 0.407 1e-115
P70423618 Cationic amino acid trans no N/A 0.926 0.875 0.413 1e-115
P18581657 Low affinity cationic ami yes N/A 0.952 0.846 0.412 1e-114
Q6DCE8622 Low affinity cationic ami N/A N/A 0.919 0.863 0.406 1e-114
A8I499657 Low affinity cationic ami no N/A 0.938 0.834 0.412 1e-113
>sp|P52569|CTR2_HUMAN Low affinity cationic amino acid transporter 2 OS=Homo sapiens GN=SLC7A2 PE=1 SV=2 Back     alignment and function desciption
 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/594 (41%), Positives = 359/594 (60%), Gaps = 64/594 (10%)

Query: 31  KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVE 90
           KL R L   DL  LG+G+TLG GVYVLAG VAK  +GPS+V+SF+IAALAS ++GLCY E
Sbjct: 29  KLCRCLSTMDLIALGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASVMAGLCYAE 88

Query: 91  FASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREA-AALFRLL-- 147
           F +R+ K+GSAY YTY+++GE  A+I GWNL L     ++ I  S +  A +  F  L  
Sbjct: 89  FGARVPKTGSAYLYTYVTVGELWAFITGWNLIL-----SYVIGTSSVARAWSGTFDELLS 143

Query: 148 KQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLG 207
           KQ+   G    T     Y+ L+ YPDF A  +++L++ L+S+GV ES  +N VFT +N+ 
Sbjct: 144 KQI---GQFLRTYFRMNYTGLAEYPDFFAVCLILLLAGLLSFGVKESAWVNKVFTAVNIL 200

Query: 208 TVVVIVGSGLFKMNPRNWAIRKE---DIPRTVRHG---------GTGGFAPFGLNGIIVG 255
            ++ ++ +G  K N  NW I +E   +I  + R           G GGF P+G  G + G
Sbjct: 201 VLLFVMVAGFVKGNVANWKISEEFLKNISASAREPPSENGTSIYGAGGFMPYGFTGTLAG 260

Query: 256 AAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD 315
           AA CF+ FVGFDCIATTGEE +NP++ IP+ I+ SL + F+ Y  ++  LTL++PYY  D
Sbjct: 261 AATCFYAFVGFDCIATTGEEVRNPQKAIPIGIVTSLLVCFMAYFGVSAALTLMMPYYLLD 320

Query: 316 AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYV 375
            ++P P  F+ +GW   K++V  GSL AL T++ G++FP+PR++YAM+ DGLL+ C + +
Sbjct: 321 EKSPLPVAFEYVGWGPAKYVVAAGSLCALSTSLLGSIFPMPRVIYAMAEDGLLFKCLAQI 380

Query: 376 SPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYS----- 430
           + +TKTP++++L +GA+ A+++ +F L  LVDM+SIGTL+AY++VA  VLILRY      
Sbjct: 381 NSKTKTPIIATLSSGAVAALMAFLFDLKALVDMMSIGTLMAYSLVAACVLILRYQPGLSY 440

Query: 431 EDGADTPIK-GTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTS 489
           +    +P K G   + + T  S      +  + FS+  L   +L P  QSA        S
Sbjct: 441 DQPKCSPEKDGLGSSPRVTSKSESQVTMLQRQGFSMRTLFCPSLLPTQQSA--------S 492

Query: 490 DCTSALQYATFTLLGL-------VYTV--------------------VFVCLARQNQNRA 522
             +  + +  F +LGL       V+ +                    + + + RQ QN+ 
Sbjct: 493 LVSFLVGFLAFLVLGLSVLTTYGVHAITRLEAWSLALLALFLVLFVAIVLTIWRQPQNQQ 552

Query: 523 RLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHS 576
           ++ F VP++P +P  SI +NIYLM+ L   TWVRF IW+ IGF IYF+YGI HS
Sbjct: 553 KVAFMVPFLPFLPAFSILVNIYLMVQLSADTWVRFSIWMAIGFLIYFSYGIRHS 606
Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.
Homo sapiens (taxid: 9606)
>sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1 Back     alignment and function description
>sp|B5D5N9|CTR2_RAT Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus GN=Slc7a2 PE=2 SV=1 Back     alignment and function description
>sp|B3TP03|CTR2_CHICK Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1 Back     alignment and function description
>sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|P70423|CTR3_MOUSE Cationic amino acid transporter 3 OS=Mus musculus GN=Slc7a3 PE=2 SV=1 Back     alignment and function description
>sp|P18581|CTR2_MOUSE Low affinity cationic amino acid transporter 2 OS=Mus musculus GN=Slc7a2 PE=1 SV=3 Back     alignment and function description
>sp|Q6DCE8|CTR2_XENLA Low affinity cationic amino acid transporter 2 OS=Xenopus laevis GN=slc7a2 PE=2 SV=1 Back     alignment and function description
>sp|A8I499|CTR2_PIG Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query584
332017888603 High affinity cationic amino acid transp 0.953 0.923 0.481 1e-154
322801571603 hypothetical protein SINV_08605 [Solenop 0.948 0.918 0.475 1e-150
383853355603 PREDICTED: high affinity cationic amino 0.928 0.898 0.456 1e-145
21356285604 slimfast, isoform C [Drosophila melanoga 0.928 0.897 0.460 1e-144
194752574606 GF11006 [Drosophila ananassae] gi|190625 0.917 0.884 0.465 1e-144
170035940632 cationic amino acid transporter [Culex q 0.941 0.870 0.482 1e-144
328715011614 PREDICTED: high affinity cationic amino 0.962 0.915 0.490 1e-143
345483725599 PREDICTED: high affinity cationic amino 0.936 0.913 0.461 1e-143
157131529626 cationic amino acid transporter [Aedes a 0.934 0.872 0.477 1e-143
194876456606 GG16286 [Drosophila erecta] gi|190655562 0.931 0.897 0.455 1e-143
>gi|332017888|gb|EGI58548.1| High affinity cationic amino acid transporter 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/594 (48%), Positives = 392/594 (65%), Gaps = 37/594 (6%)

Query: 4   SNFLDALSRKKSSYSEDAYDDGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAK 63
           S    ALSR++    E   +D +G  E+LARVLGL DLT LG+GATLG+GVYVLAGSVAK
Sbjct: 3   SRLWKALSRRRI---ELENEDTNG--ERLARVLGLFDLTALGVGATLGLGVYVLAGSVAK 57

Query: 64  NQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLEL 123
             AGP+V +SF+IAA+ASA +GLCY EFASR+ K+GSAY Y+Y+++GEF A++IGWNL L
Sbjct: 58  ETAGPAVSVSFLIAAIASAFAGLCYAEFASRVPKAGSAYVYSYVTVGEFIAFVIGWNLIL 117

Query: 124 FIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLM 183
              +    +     R  ++    L     G    S +  D  SFLS YPDF A  +VML+
Sbjct: 118 EYVIGTASVA----RGLSSYIDALIGNVMGNALRSLMPID-VSFLSEYPDFFAFAMVMLL 172

Query: 184 SALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGG 243
             L+  GV ES+ LN++FT +NL T+ +++ +G  K NP NW+I  EDIP TV++GGTGG
Sbjct: 173 VVLLCIGVKESSILNNIFTVINLITITIVIVAGSMKANPSNWSIAPEDIPDTVKNGGTGG 232

Query: 244 FAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAI 303
           F PFG+NG++VGAAKCF+GFVGFD +ATTGEE+KNP+R IPL+++LSL ++F+ Y  ++I
Sbjct: 233 FMPFGMNGVMVGAAKCFYGFVGFDAVATTGEEAKNPQRHIPLAVVLSLIVIFIAYFGVSI 292

Query: 304 VLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMS 363
           VLT+++PYY Q A+APFPH FD +GWPV+KW+V +G++FAL T++ GA+FPLPR+LYAM+
Sbjct: 293 VLTMMLPYYAQSADAPFPHAFDEIGWPVVKWIVNIGAIFALCTSLLGAMFPLPRVLYAMA 352

Query: 364 LDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALS 423
            DG+++   S V P+T TP+  ++L+G L  +++ +F L QL+DM+SIGTLLAYTIVA+ 
Sbjct: 353 SDGIIFKTLSTVHPKTMTPIYGTVLSGLLIGLMTLIFNLQQLIDMMSIGTLLAYTIVAIC 412

Query: 424 VLILRYSEDGAD--------------TPI---KGTSCAEKETKSSSFAEK--DINAKNFS 464
           VLILRY ++                 TP+   K     +   + +  + K  ++      
Sbjct: 413 VLILRYQKEENSSNVSVILPTSNYQLTPVNIFKELFNLQNRKEPTELSNKIANVGIAFLC 472

Query: 465 VNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARL 524
           +       L  N  + L  G +  S   SAL    F  L          + RQ   +  L
Sbjct: 473 IIICIITFLISNMGAHLLAGNMVISVTLSALAIVLFLNLA--------AIGRQPVQKTEL 524

Query: 525 KFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQ 578
            FKVP VPL+PCLSIF+N YLM+ LD+ TW+RF  WL+IGF IY  YGI HS+Q
Sbjct: 525 SFKVPLVPLIPCLSIFINTYLMLQLDVFTWIRFATWLLIGFCIYGFYGIVHSEQ 578

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322801571|gb|EFZ22227.1| hypothetical protein SINV_08605 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|383853355|ref|XP_003702188.1| PREDICTED: high affinity cationic amino acid transporter 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|21356285|ref|NP_649428.1| slimfast, isoform C [Drosophila melanogaster] gi|24668802|ref|NP_730764.1| slimfast, isoform A [Drosophila melanogaster] gi|24668806|ref|NP_730765.1| slimfast, isoform B [Drosophila melanogaster] gi|7296598|gb|AAF51880.1| slimfast, isoform B [Drosophila melanogaster] gi|7296599|gb|AAF51881.1| slimfast, isoform A [Drosophila melanogaster] gi|7296600|gb|AAF51882.1| slimfast, isoform C [Drosophila melanogaster] gi|20151635|gb|AAM11177.1| LD37241p [Drosophila melanogaster] gi|220946138|gb|ACL85612.1| slif-PA [synthetic construct] Back     alignment and taxonomy information
>gi|194752574|ref|XP_001958596.1| GF11006 [Drosophila ananassae] gi|190625878|gb|EDV41402.1| GF11006 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|170035940|ref|XP_001845824.1| cationic amino acid transporter [Culex quinquefasciatus] gi|167878423|gb|EDS41806.1| cationic amino acid transporter [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|328715011|ref|XP_001942513.2| PREDICTED: high affinity cationic amino acid transporter 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|345483725|ref|XP_003424871.1| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 2 [Nasonia vitripennis] gi|345483727|ref|XP_001599622.2| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 1 [Nasonia vitripennis] gi|345483729|ref|XP_003424872.1| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 3 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|157131529|ref|XP_001662274.1| cationic amino acid transporter [Aedes aegypti] gi|108871502|gb|EAT35727.1| AAEL012131-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|194876456|ref|XP_001973779.1| GG16286 [Drosophila erecta] gi|190655562|gb|EDV52805.1| GG16286 [Drosophila erecta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query584
FB|FBgn0037203604 slif "slimfast" [Drosophila me 0.953 0.922 0.423 5.8e-121
FB|FBgn0036764633 CG5535 [Drosophila melanogaste 0.955 0.881 0.390 2.7e-107
FB|FBgn0036493 1063 CG7255 [Drosophila melanogaste 0.907 0.498 0.396 3.2e-104
ZFIN|ZDB-GENE-041114-206644 slc7a3a "solute carrier family 0.847 0.768 0.367 5.8e-103
UNIPROTKB|P52569658 SLC7A2 "Low affinity cationic 0.717 0.636 0.403 9.5e-103
UNIPROTKB|F1N5P6629 SLC7A1 "Uncharacterized protei 0.811 0.753 0.371 1.5e-102
UNIPROTKB|F1P388624 SLC7A1 "Uncharacterized protei 0.696 0.652 0.397 2.5e-102
UNIPROTKB|E2QU34629 SLC7A1 "Uncharacterized protei 0.760 0.705 0.377 2.2e-101
UNIPROTKB|G3MV66622 Slc7a1 "Solute carrier family 0.690 0.647 0.392 3.6e-101
MGI|MGI:88117622 Slc7a1 "solute carrier family 0.690 0.647 0.392 3.6e-101
FB|FBgn0037203 slif "slimfast" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 245/578 (42%), Positives = 355/578 (61%)

Query:     3 LSNFLDALSRKKSSYSEDAYDDGSGSREKLARXXXXXXXXXXXXXXXXXXXXYVLAGSVA 62
             ++N   AL+R+K+   ED  ++G     +LAR                    YVLAG VA
Sbjct:     1 MTNLWKALTRRKT---EDV-NEGES---QLARVLNLFDLTALGVGSTLGLGVYVLAGQVA 53

Query:    63 KNQAGPXXXXXXXXXXXXXXXXGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLE 122
              N AGP                G+CY EFA+R+ K+GSAY Y+Y++IGEF A+ IGWNL 
Sbjct:    54 FNIAGPAVTISFLIAAIASAFAGICYAEFAARVPKAGSAYVYSYVTIGEFVAFTIGWNLI 113

Query:   123 LFIEVQAFCIEFSRIREAAALFRLLKQXXXXXXXXXXXXXDRYSFLSTYPDFIAAGIVML 182
             L   +    +     R  +  F  L               D   FL  YPDF++ G+V+L
Sbjct:   114 LEYVIGTASVA----RGLSGYFDSLINNNMSKALNESMHID-VDFLGDYPDFLSFGMVLL 168

Query:   183 MSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTG 242
             ++A++++G  ES+ LN++FT +NL T+ +++ +G    N  NW I K+D+P      GTG
Sbjct:   169 LAAILAFGAKESSFLNNIFTTVNLVTIAIVLVAGAMNANVDNWRIPKKDVPEGF---GTG 225

Query:   243 GFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIA 302
             GF PFG+ G++ GAAKCF+GFVGFDCIATTGEE+ NPKR+IPLSI++SL I+F+ Y  ++
Sbjct:   226 GFMPFGIAGVMAGAAKCFYGFVGFDCIATTGEEAINPKRNIPLSIVVSLIIIFLSYFGVS 285

Query:   303 IVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAM 362
              VLT+++PYY+QD +APFPH FDS+ W  +KW+VT+G++FAL T++ GA+FPLPRILYAM
Sbjct:   286 TVLTMMLPYYKQDKDAPFPHAFDSVEWYTIKWIVTIGAVFALCTSLLGAMFPLPRILYAM 345

Query:   363 SLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVAL 422
               DG+L+   S V+  TKTP+L+++++G   ++++ +F LDQLVDM+SIGTLLAYTIVA+
Sbjct:   346 GKDGILFKRLSTVNSYTKTPLLATIVSGIFASIMAMLFNLDQLVDMMSIGTLLAYTIVAI 405

Query:   423 SVLILRYSEDGAD--TPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSA 480
              VL+LRY ++       +K  +   +    +SF E   N+   S+  +            
Sbjct:   406 CVLVLRYQDEEMTKLVSVKAPNVFRQFFNGNSFREP--NSMTSSITKVGIVVFAIFCLVW 463

Query:   481 LTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIF 540
              +   V   D T  +     +L+G V  ++ V +  Q  +   L FKVP VP VPCLS+F
Sbjct:   464 CSLQKVFDLDSTGGI--VALSLVGAVLILICVVIGMQPVSTIELTFKVPLVPFVPCLSVF 521

Query:   541 MNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQ 578
              N+YLM  LD++TW+RF+IW+VIG+ IYF YG+ +S Q
Sbjct:   522 ANLYLMFQLDLNTWIRFLIWIVIGYVIYFCYGMRNSTQ 559
GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS;IDA
GO:0040007 "growth" evidence=IMP
GO:0006865 "amino acid transport" evidence=IDA
GO:0016020 "membrane" evidence=IEA
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0006629 "lipid metabolic process" evidence=IMP
FB|FBgn0036764 CG5535 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0036493 CG7255 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-206 slc7a3a "solute carrier family 7 (cationic amino acid transporter, y+ system), member 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P52569 SLC7A2 "Low affinity cationic amino acid transporter 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5P6 SLC7A1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P388 SLC7A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QU34 SLC7A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3MV66 Slc7a1 "Solute carrier family 7 member 1" [Mus musculus molossinus (taxid:57486)] Back     alignment and assigned GO terms
MGI|MGI:88117 Slc7a1 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B5D5N9CTR2_RATNo assigned EC number0.41590.95200.8462yesN/A
Q797A7YFNA_BACSUNo assigned EC number0.34350.67460.8546yesN/A
P18581CTR2_MOUSENo assigned EC number0.41270.95200.8462yesN/A
Q8W4K3CAAT4_ARATHNo assigned EC number0.33000.92290.8983yesN/A
P52569CTR2_HUMANNo assigned EC number0.41240.90750.8054yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
TIGR00906557 TIGR00906, 2A0303, cationic amino acid transport p 1e-157
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 5e-70
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 7e-48
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 6e-30
pfam00324473 pfam00324, AA_permease, Amino acid permease 2e-27
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 9e-25
pfam1390651 pfam13906, AA_permease_C, C-terminus of AA_permeas 1e-22
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 6e-20
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 5e-19
PRK10249458 PRK10249, PRK10249, phenylalanine transporter; Pro 3e-17
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 5e-14
PRK10238456 PRK10238, PRK10238, aromatic amino acid transporte 2e-12
PRK11387471 PRK11387, PRK11387, S-methylmethionine transporter 5e-12
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 8e-11
PRK10580457 PRK10580, proY, putative proline-specific permease 9e-11
TIGR00913478 TIGR00913, 2A0310, amino acid permease (yeast) 1e-10
PRK15049499 PRK15049, PRK15049, L-asparagine permease; Provisi 2e-10
pfam10155126 pfam10155, DUF2363, Uncharacterized conserved prot 3e-10
PRK10197446 PRK10197, PRK10197, gamma-aminobutyrate transporte 3e-10
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 6e-10
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 2e-09
PRK11021410 PRK11021, PRK11021, putative transporter; Provisio 4e-08
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 1e-07
PRK10836489 PRK10836, PRK10836, lysine transporter; Provisiona 2e-07
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 2e-07
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 1e-06
PRK11049469 PRK11049, PRK11049, D-alanine/D-serine/glycine per 6e-06
TIGR04299430 TIGR04299, antiport_PotE, putrescine-ornithine ant 4e-05
PRK10746461 PRK10746, PRK10746, putative transport protein Yif 6e-05
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 1e-04
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 6e-04
TIGR04298429 TIGR04298, his_histam_anti, histidine-histamine an 6e-04
TIGR00930 953 TIGR00930, 2a30, K-Cl cotransporter 0.004
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information 
 Score =  460 bits (1186), Expect = e-157
 Identities = 242/588 (41%), Positives = 353/588 (60%), Gaps = 41/588 (6%)

Query: 1   MWLSNFLDALSRKKSSYSEDAYDDGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGS 60
             +  F   L R+K        D  S    K+ R L   DL  LGIG+T+G G+YVL G 
Sbjct: 1   RAVLTFARCLIRRKI------VDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGE 54

Query: 61  VAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWN 120
           VA+N +GP++V+SF+I+ LA+ LSG CY EF +R+ K+GSAY Y+Y+++GE  A+I GWN
Sbjct: 55  VARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWN 114

Query: 121 LELFIEVQAFCIEFSRI-REAAALFRLLKQLESGGGETSTLTTDR--YSFLSTYPDFIAA 177
           L L      + I  + + R  +A F    +L +        T  +  Y  L+ YPDF A 
Sbjct: 115 LIL-----EYVIGTAAVARSWSAYF---DELLNKQIGQFRRTYFKLNYDGLAEYPDFFAV 166

Query: 178 GIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVR 237
            +++L++ L+S+GV ES  +N +FT +N+  ++ ++ +G  K +  NW+I +E       
Sbjct: 167 CLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEK------ 220

Query: 238 HGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVC 297
             G GGF P+G  G++ GAA CFF F+GFD IATTGEE KNP+R IP+ I+ SL + FV 
Sbjct: 221 --GAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVA 278

Query: 298 YLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPR 357
           Y  ++  LTL++PYY  D +APFP  F+ +GW   K++V VG+L  + T++ G +FPLPR
Sbjct: 279 YFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPR 338

Query: 358 ILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAY 417
           ++YAM+ DGLL+   + ++ +TKTP+ +++++GA+ A+++ +F L  LVD+LSIGTLLAY
Sbjct: 339 VIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAY 398

Query: 418 TIVALSVLILRYS-----EDGADTPIKGT--SCAEKETKSSSFAEKDINAKNFSVNALPE 470
           ++VA  VLILRY          DT  K T  S     +KS S +E       FS+  L  
Sbjct: 399 SLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEG------FSLRTLFS 452

Query: 471 ETLDPNSQSALTGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPW 530
             +   S     G      +  S      F +L L   +V + + RQ QN+ ++ FKVP 
Sbjct: 453 GLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFL---LVVLTIWRQPQNKQKVAFKVPL 509

Query: 531 VPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQ 578
           VP +P LSI +NI+LM+ LD  TWVRF IW+ IGF IYF YGI HS +
Sbjct: 510 VPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional Back     alignment and domain information
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) Back     alignment and domain information
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional Back     alignment and domain information
>gnl|CDD|220604 pfam10155, DUF2363, Uncharacterized conserved protein (DUF2363) Back     alignment and domain information
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|182694 PRK10746, PRK10746, putative transport protein YifK; Provisional Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter Back     alignment and domain information
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 584
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
KOG1286|consensus554 100.0
KOG1287|consensus479 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
KOG1289|consensus550 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
KOG2082|consensus 1075 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.97
KOG1288|consensus 945 99.96
KOG2083|consensus 643 99.93
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.9
PHA02764399 hypothetical protein; Provisional 99.88
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.83
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.82
PRK10483414 tryptophan permease; Provisional 99.78
PRK09664415 tryptophan permease TnaB; Provisional 99.77
TIGR00814397 stp serine transporter. The HAAAP family includes 99.76
PRK15132403 tyrosine transporter TyrP; Provisional 99.75
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.62
PF03845320 Spore_permease: Spore germination protein; InterPr 99.61
PRK13629443 threonine/serine transporter TdcC; Provisional 99.59
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.34
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 99.25
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.22
PF1390651 AA_permease_C: C-terminus of AA_permease 99.11
PRK11375484 allantoin permease; Provisional 99.05
KOG1303|consensus437 99.01
COG3949349 Uncharacterized membrane protein [Function unknown 98.95
COG1457442 CodB Purine-cytosine permease and related proteins 98.93
PTZ00206467 amino acid transporter; Provisional 98.89
PLN03074473 auxin influx permease; Provisional 98.88
KOG1304|consensus449 98.85
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.73
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.68
PRK11017404 codB cytosine permease; Provisional 98.65
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.53
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.48
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.43
TIGR00813407 sss transporter, SSS family. have different number 98.34
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.2
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.04
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.02
PRK12488549 acetate permease; Provisional 97.98
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.97
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 97.96
PRK00701439 manganese transport protein MntH; Reviewed 97.96
PRK09395551 actP acetate permease; Provisional 97.9
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.88
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.86
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.84
PRK15419502 proline:sodium symporter PutP; Provisional 97.84
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.83
PRK15433439 branched-chain amino acid transport system 2 carri 97.77
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.71
PRK10484523 putative transporter; Provisional 97.67
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 97.66
KOG1305|consensus411 97.63
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 97.62
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.31
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 97.21
PRK09950506 putative transporter; Provisional 97.08
PRK09928679 choline transport protein BetT; Provisional 96.55
COG4147529 DhlC Predicted symporter [General function predict 96.4
COG1292537 BetT Choline-glycine betaine transporter [Cell env 96.37
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 96.3
PLN00150 779 potassium ion transporter family protein; Provisio 96.28
PLN00149 779 potassium transporter; Provisional 96.22
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 96.16
PLN00148 785 potassium transporter; Provisional 95.86
PLN00151 852 potassium transporter; Provisional 95.79
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 95.65
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 95.54
PRK10745622 trkD potassium transport protein Kup; Provisional 95.25
TIGR00842453 bcct choline/carnitine/betaine transport. properti 94.61
KOG2466|consensus572 91.92
COG3158627 Kup K+ transporter [Inorganic ion transport and me 91.33
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 88.17
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 83.71
KOG4303|consensus524 82.89
PTZ00206467 amino acid transporter; Provisional 80.06
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information 
Probab=100.00  E-value=7.5e-68  Score=584.74  Aligned_cols=536  Identities=43%  Similarity=0.775  Sum_probs=434.4

Q ss_pred             hHhHHhhhcccccCCCcccccCCCCCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHH
Q psy6067           3 LSNFLDALSRKKSSYSEDAYDDGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASA   82 (584)
Q Consensus         3 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l   82 (584)
                      .+++.+++.|||+.+.      +++++++++|+++.+|++++++|.++|+|+|+.++.++...+||..+++|+++++.++
T Consensus         3 ~~~~~~~~~r~k~~~~------~~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l   76 (557)
T TIGR00906         3 VLTFARCLIRRKIVDL------DSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAV   76 (557)
T ss_pred             hHHHHHHHhccCCccc------ccccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHH
Confidence            5678899999998832      1223457999999999999999999999999999987766799999999999999999


Q ss_pred             HHHHHHHHhhhcccCcCCceeehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccc
Q psy6067          83 LSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTT  162 (584)
Q Consensus        83 ~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  162 (584)
                      +.+++|+|+++++|++||.|.|+++.+|+.+||++||.+++.|....+.       .+.+.++|+..+++ ....++..+
T Consensus        77 ~~al~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~-------va~~~s~yl~~ll~-~~~~~~~~~  148 (557)
T TIGR00906        77 LSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAA-------VARSWSAYFDELLN-KQIGQFRRT  148 (557)
T ss_pred             HHHHHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh-hhccccccc
Confidence            9999999999999999999999999999999999999999999999999       89999999888775 211111110


Q ss_pred             ---cCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccC
Q psy6067         163 ---DRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHG  239 (584)
Q Consensus       163 ---~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  239 (584)
                         .+.+....+...++++++++.+.+|.+|+|..++++++++.++++.++++++.++.+.+.++|.....        .
T Consensus       149 ~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~--------~  220 (557)
T TIGR00906       149 YFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEE--------K  220 (557)
T ss_pred             cccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhcccccc--------c
Confidence               01111122345677778888899999999999999999999999999998888887766666542111        1


Q ss_pred             CCCCCCCcchHHHHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCc
Q psy6067         240 GTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAP  319 (584)
Q Consensus       240 ~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p  319 (584)
                      +.+++.|.|+.+++.++..++|+|.|||.+++++||+|||+||+||+++.++++++++|++..+++....|+++.+.++|
T Consensus       221 ~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p  300 (557)
T TIGR00906       221 GAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAP  300 (557)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcH
Confidence            23356788888999999999999999999999999999999999999999999999999999999999999988887889


Q ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHH
Q psy6067         320 FPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAV  399 (584)
Q Consensus       320 ~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~  399 (584)
                      +..+++..+.++...++.++++.+.+++.++.+++.+|++++|||||.+|++|+|+|||+++|++++++.++++.++.++
T Consensus       301 ~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~  380 (557)
T TIGR00906       301 FPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFL  380 (557)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            99999988889999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCc
Q psy6067         400 FKLDQLVDMLSIGTLLAYTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQS  479 (584)
Q Consensus       400 ~~~~~l~~~~s~~~l~~y~l~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (584)
                      .+++.+.++.+++.++.|.+.+++++++|++++...+. +. .+.+|+++               . ..|+.+.-++++.
T Consensus       381 ~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~-~~-~~~~~~~~---------------~-~~~~~~~~~~~~~  442 (557)
T TIGR00906       381 FDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQ-AK-DTDEKDTL---------------D-SWVPFTSKSESQS  442 (557)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-cc-cccccccc---------------c-ccccccccccccc
Confidence            89999999999999999999999999999887543322 10 01111100               0 0011111111111


Q ss_pred             ccccc-----ccccccchh----hh----H---HHHHHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHH
Q psy6067         480 ALTGG-----PVPTSDCTS----AL----Q---YATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNI  543 (584)
Q Consensus       480 ~~~~~-----~~~~~~~~~----~~----~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  543 (584)
                      .+..-     .+.+..|..    ..    +   .....+..++.+..+...+||||.+.+++||+|++|++|+++++.|+
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~  522 (557)
T TIGR00906       443 EGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINI  522 (557)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHH
Confidence            10000     000000110    00    0   11233334444566677788998877899999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy6067         544 YLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQ  578 (584)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~  578 (584)
                      |+|.+++..+|.++.+|+++|.++|+.|++||+|+
T Consensus       523 ~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~  557 (557)
T TIGR00906       523 FLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE  557 (557)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence            99999999999999999999999999999999874

>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>KOG1286|consensus Back     alignment and domain information
>KOG1287|consensus Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>KOG1289|consensus Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG2082|consensus Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG1288|consensus Back     alignment and domain information
>KOG2083|consensus Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF13906 AA_permease_C: C-terminus of AA_permease Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG1303|consensus Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1304|consensus Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1305|consensus Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>KOG2466|consensus Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>KOG4303|consensus Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
3gi9_C444 Crystal Structure Of Apct Transporter Bound To 7f11 1e-09
3gi8_C444 Crystal Structure Of Apct K158a Transporter Bound T 1e-09
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure 
Iteration: 1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 18/192 (9%)
Query: 245 APFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIV 304
           AP  ++G+I  +A  F  ++GF  I    E  +NPK+++P +I +S+ IV   Y+ +AI 
Sbjct: 183 APSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAIS 242
Query: 305 LTLIIPYYE---------QDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPL 355
               +P  E           A  PF     +LG+     L+++G+LF++ +AM   ++  
Sbjct: 243 AIGNLPIDELIKASENALAVAAKPF---LGNLGF----LLISIGALFSISSAMNATIYGG 295
Query: 356 PRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLL 415
             + Y+++ DG L + F        T  L   +T AL  + + +F ++ +  + S   ++
Sbjct: 296 ANVAYSLAKDGELPEFFERKVWFKSTEGL--YITSALGVLFALLFNMEGVASITSAVFMV 353
Query: 416 AYTIVALSVLIL 427
            Y  V LS  IL
Sbjct: 354 IYLFVILSHYIL 365
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 1e-105
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 2e-14
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 3e-71
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 3e-05
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 6e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
 Score =  323 bits (830), Expect = e-105
 Identities = 82/410 (20%), Positives = 162/410 (39%), Gaps = 44/410 (10%)

Query: 30  EKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYV 89
           E   + L L +   + +G  +G  ++ + G  AK  AG ++  +FI++ + + L    Y 
Sbjct: 2   ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAK-IAGRNLPETFILSGIYALLVAYSYT 60

Query: 90  EFASRISKSGSAYNYTYLSIGE-FAAYIIGWNL--ELFIEVQAFCIEFSRIREAAALFRL 146
           +  ++I  +     + + +IG+      +   L     I +  F   F+          L
Sbjct: 61  KLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFA-----GYFLPL 115

Query: 147 LKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNL 206
           +    +                         GIV   +AL  +G     R       + L
Sbjct: 116 INAPINTF----------------NIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKL 159

Query: 207 GTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGF 266
             + + + +GL  ++P                      AP  ++G+I  +A  F  ++GF
Sbjct: 160 LILGLFIFAGLITIHPSYV---------------IPDLAPSAVSGMIFASAIFFLSYMGF 204

Query: 267 DCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE--QDAEAPFPHIF 324
             I    E  +NPK+++P +I +S+ IV   Y+ +AI     +P  E  + +E       
Sbjct: 205 GVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAA 264

Query: 325 DSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVL 384
                 +   L+++G+LF++ +AM   ++    + Y+++ DG L + F        T  L
Sbjct: 265 KPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGL 324

Query: 385 SSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRYSEDGA 434
              +T AL  + + +F ++ +  + S   ++ Y  V LS  IL     G 
Sbjct: 325 --YITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGGR 372
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query584
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.2
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 98.12
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.01
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.6
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 94.88
4ain_A539 Glycine betaine transporter BETP; membrane protein 92.5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=2.1e-51  Score=443.51  Aligned_cols=423  Identities=18%  Similarity=0.223  Sum_probs=362.2

Q ss_pred             ccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhc
Q psy6067          31 KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIG  110 (584)
Q Consensus        31 ~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG  110 (584)
                      ++||+++.++++++++++++|+|+|..++.+.  .+|+.++++|+++++.+++.+++|+|+++++|++||.|.|+++.+|
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G   82 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFG   82 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSC
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcC
Confidence            46789999999999999999999999988743  4688899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy6067         111 EFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWG  190 (584)
Q Consensus       111 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G  190 (584)
                      |.+|+..+|.+++.+....+.       ++...+++++.+++         ..+   .+.+..+++++++++.+.+|++|
T Consensus        83 ~~~g~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~in~~g  143 (445)
T 3l1l_A           83 PFLGYQTNVLYWLACWIGNIA-------MVVIGVGYLSYFFP---------ILK---DPWVLTITCVVVLWIFVLLNIVG  143 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTTTCG---------GGG---SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCc---------ccc---ccHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999988888       88888888776654         110   12345677888889999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhh
Q psy6067         191 VSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIA  270 (584)
Q Consensus       191 ~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~  270 (584)
                      +|..++++.+++..+++.++++++.++...+.+++...       +++   .+  ..++.++..++...+|+|.|+|.++
T Consensus       144 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-------~~~---~~--~~~~~~~~~~~~~~~~af~G~e~~~  211 (445)
T 3l1l_A          144 PKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAA-------WNV---SG--LGTFGAIQSTLNVTLWSFIGVESAS  211 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------------------HHHHHHHHHHTTTTTTHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccc-------cCc---cC--CccHHHHHHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999888888765544332110       000   00  1135578889999999999999999


Q ss_pred             cccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Q psy6067         271 TTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMF  349 (584)
Q Consensus       271 ~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~  349 (584)
                      +++||+|||+|++||+++.+..++.++|++..++.....|+++.. .++|+.+++++.++++...++.++.+++.+++.+
T Consensus       212 ~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  291 (445)
T 3l1l_A          212 VAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLG  291 (445)
T ss_dssp             HGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988764 4679999999988899999999999999999999


Q ss_pred             HhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh-------CHHHHHHHHHHHHHHHHHHHHH
Q psy6067         350 GALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF-------KLDQLVDMLSIGTLLAYTIVAL  422 (584)
Q Consensus       350 ~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~-------~~~~l~~~~s~~~l~~y~l~~l  422 (584)
                      +.+++.+|.+++|||||.+|++|+|+| |+++|+++++++.+++.++.++.       .++.+.++.++..++.|.+.++
T Consensus       292 ~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~  370 (445)
T 3l1l_A          292 GWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCA  370 (445)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 67999999999999887766542       4789999999999999999999


Q ss_pred             HHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhHHHHHHH
Q psy6067         423 SVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTL  502 (584)
Q Consensus       423 a~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (584)
                      +++++|+|+|                                                                      
T Consensus       371 ~~~~~r~~~~----------------------------------------------------------------------  380 (445)
T 3l1l_A          371 ALLLLGHGHF----------------------------------------------------------------------  380 (445)
T ss_dssp             HHHHHHSSSS----------------------------------------------------------------------
T ss_pred             HHHHHhhcCc----------------------------------------------------------------------
Confidence            9999988752                                                                      


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy6067         503 LGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQK  579 (584)
Q Consensus       503 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~  579 (584)
                                        +    .|.|..++++.++.+.+++++...++..+....+++++|+.+|..+++++++++
T Consensus       381 ------------------~----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~  435 (445)
T 3l1l_A          381 ------------------G----KARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNP  435 (445)
T ss_dssp             ------------------G----GGCTTTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred             ------------------c----cccchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence                              0    123567789999999999999999999999999999999999998877665543
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query584
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 97.17
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.17  E-value=0.18  Score=51.82  Aligned_cols=39  Identities=26%  Similarity=0.409  Sum_probs=30.1

Q ss_pred             HHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHH
Q psy6067          38 LTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFII   76 (584)
Q Consensus        38 ~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll   76 (584)
                      ..+.+.-++|..+|.|-+.+.+.....++|...++.+++
T Consensus         7 ~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~   45 (509)
T d2a65a1           7 RLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYII   45 (509)
T ss_dssp             HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHH
Confidence            466777789999999999998888878878665555544