Psyllid ID: psy6076

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MDSKLLVCFLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHcccccHHHHHHHHHcccEEEEEEEccHHHHHHHHHHcccccccccccccccccccccccEEEEcccccccHHHHHHEEEEccccccccHHHHHHHHHHHHccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEcHHHHHHcccccEEEEEEEcHHHHHcccHHHHHHHHHHcccEEEEEEEEcccHHHHHHHcHHHcccccHHHHHHHHccccEEEEEEEEEcHHHHHHHHHccccHHHcccccHHHHHccEccEccEEEcccHHHHHHHEEEEEEcHHHHHHccHHHHHHHHHHHccEEEEEEEEcccH
Coil and Loop (DISEMBL)
MDSKLLVCFLLQCALyataspnkertfimikpdgvqrglVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMssgpvvpmVWEGLNVIKVGrsmlgatnpadcipgtirgDLCLLVCCLLQCAlyataspnkertfimikpdgvqrglVGKIVQRFEEKGFKLIAMKFVQADD
Flexible Loop (DISEMBL)
MDSKLLVCFLLQCALyataspnkertfimikpdgvqrGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYAtaspnkertfimikpdgvqrGLVGKIVQRFEEKGFKLIAMKFVQADD
Low Complexity Region (SEG)
MDSKLLVCFLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDlcllvccllqcalYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD
Disordered region (IsUnstruct)
****LLVCFLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFV****
Disordered Region (DISOPRED)
***KLLVCFLLQCAL******NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYAT*SP*KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQA**
Disordered Region (DISEMBL)
MDSKLLVCFLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD
Disordered Region (DISPRO)
**SKLLVCFLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDSKLLVCFLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
P08879	153	Nucleoside diphosphate ki	no	N/A	0.675	0.830	0.661	9e-46
Q6XI71	150	Nucleoside diphosphate ki	N/A	N/A	0.675	0.846	0.661	9e-46
P70011	154	Nucleoside diphosphate ki	N/A	N/A	0.686	0.837	0.635	4e-44
P70010	154	Nucleoside diphosphate ki	N/A	N/A	0.686	0.837	0.635	6e-44
Q05982	152	Nucleoside diphosphate ki	yes	N/A	0.675	0.835	0.629	2e-43
P15532	152	Nucleoside diphosphate ki	yes	N/A	0.675	0.835	0.629	2e-43
P52174	152	Nucleoside diphosphate ki	yes	N/A	0.675	0.835	0.629	3e-43
Q3T0Q4	152	Nucleoside diphosphate ki	yes	N/A	0.718	0.888	0.610	3e-43
P52175	152	Nucleoside diphosphate ki	no	N/A	0.675	0.835	0.629	5e-43
Q50KA9	152	Nucleoside diphosphate ki	yes	N/A	0.675	0.835	0.637	5e-43

>sp|P08879|NDKA_DROME Nucleoside diphosphate kinase OS=Drosophila melanogaster GN=awd PE=1 SV=3

 Score =  182 bits (463), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 98/127 (77%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           NKERTFIM+KPDGVQRGLVGKI++RFE+KGFKL+A+KF  A  +LL  HYA L  +PFF 
Sbjct: 4   NKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFP 63

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+ YM+SGPVVPMVWEGLNV+K GR MLGATNPAD +PGTIRGD C+ V   +     A
Sbjct: 64  GLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDA 123

Query: 142 TASPNKE 148
             S  KE
Sbjct: 124 VESAEKE 130

Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 6

>sp|Q6XI71|NDKA_DROYA Nucleoside diphosphate kinase (Fragment) OS=Drosophila yakuba GN=awd PE=2 SV=1

 Score =  182 bits (463), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 98/127 (77%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           NKERTFIM+KPDGVQRGLVGKI++RFE+KGFKL+A+KF  A  +LL  HYA L  +PFF 
Sbjct: 1   NKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFP 60

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+ YM+SGPVVPMVWEGLNV+K GR MLGATNPAD +PGTIRGD C+ V   +     A
Sbjct: 61  GLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDA 120

Query: 142 TASPNKE 148
             S  KE
Sbjct: 121 VESAEKE 127

Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.

Drosophila yakuba (taxid: 7245)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 6

>sp|P70011|NDKA2_XENLA Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1

 Score =  177 bits (449), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/129 (63%), Positives = 100/129 (77%)

Query: 20  SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
           + NKERTFI IKPDGVQRGL+G I++RFE+KGF+L+AMKF+QA   LLR HY  LKD+PF
Sbjct: 2   AANKERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFLQASQDLLRQHYIDLKDRPF 61

Query: 80  FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCAL 139
           +  L++YM+SGPV+ MVWEGLNV+K GR MLG TNPAD  PGTIRGDLC+ V   +    
Sbjct: 62  YPGLVEYMNSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLCIQVGRNIIHGS 121

Query: 140 YATASPNKE 148
            +  S NKE
Sbjct: 122 DSVDSANKE 130

Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 6

>sp|P70010|NDKA1_XENLA Nucleoside diphosphate kinase A1 OS=Xenopus laevis PE=2 SV=1

 Score =  176 bits (447), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 82/129 (63%), Positives = 98/129 (75%)

Query: 20  SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
           + NKERTFI IKPDGVQRGL+G I++RFE+KGF+L+AMKF QA   LLR HY  LKD+PF
Sbjct: 2   AANKERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFQQASQDLLRQHYIDLKDRPF 61

Query: 80  FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCAL 139
           +  L++YMSSGPV+ MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V   +    
Sbjct: 62  YPGLVEYMSSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 121

Query: 140 YATASPNKE 148
            +  S NKE
Sbjct: 122 DSVESANKE 130

Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 6

>sp|Q05982|NDKA_RAT Nucleoside diphosphate kinase A OS=Rattus norvegicus GN=Nme1 PE=1 SV=1

 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 96/127 (75%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+PFF 
Sbjct: 3   NSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFFS 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V   +     +
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDS 122

Query: 142 TASPNKE 148
             S  KE
Sbjct: 123 VESAEKE 129

Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Possesses nucleoside-diphosphate kinase, serine/threonine-specific protein kinase, geranyl and farnesyl pyrophosphate kinase, histidine protein kinase and 3'-5' exonuclease activities. Involved in cell proliferation, differentiation and development, signal transduction, G protein-coupled receptor endocytosis, and gene expression. Required for neural development including neural patterning and cell fate determination.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 6

>sp|P15532|NDKA_MOUSE Nucleoside diphosphate kinase A OS=Mus musculus GN=Nme1 PE=1 SV=1

 Score =  174 bits (442), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 96/127 (75%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+PFF 
Sbjct: 3   NSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPFFT 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V   +     +
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDS 122

Query: 142 TASPNKE 148
             S  KE
Sbjct: 123 VKSAEKE 129

Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Possesses nucleoside-diphosphate kinase, serine/threonine-specific protein kinase, geranyl and farnesyl pyrophosphate kinase, histidine protein kinase and 3'-5' exonuclease activities. Involved in cell proliferation, differentiation and development, signal transduction, G protein-coupled receptor endocytosis, and gene expression. Required for neural development including neural patterning and cell fate determination.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 6

>sp|P52174|NDKA1_BOVIN Nucleoside diphosphate kinase A 1 OS=Bos taurus GN=NME1-1 PE=1 SV=3

 Score =  174 bits (441), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 97/127 (76%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A + LL+ HY  LKD+PFF 
Sbjct: 3   NSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFA 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V   +     +
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDS 122

Query: 142 TASPNKE 148
             S  KE
Sbjct: 123 VESAEKE 129

Major role in the synthesis of nucleoside triphosphates other than ATP. Possesses nucleoside-diphosphate kinase, serine/threonine-specific protein kinase, geranyl and farnesyl pyrophosphate kinase, histidine protein kinase and 3'-5' exonuclease activities. Involved in cell proliferation, differentiation and development, signal transduction, G protein-coupled receptor endocytosis, and gene expression. Required for neural development including neural patterning and cell fate determination.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 6

>sp|Q3T0Q4|NDKB_BOVIN Nucleoside diphosphate kinase B OS=Bos taurus GN=NME2 PE=1 SV=1

 Score =  174 bits (441), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 103/136 (75%), Gaps = 1/136 (0%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           + ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF+QA ++LL+ HY  LKD+PFF 
Sbjct: 3   HAERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPFFP 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM+SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V   +     +
Sbjct: 63  GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDS 122

Query: 142 TASPNKERTFIMIKPD 157
             S  KE   +  KP+
Sbjct: 123 VKSAEKEIN-LWFKPE 137

Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Negatively regulates Rho activity by interacting with AKAP13/LBC (By similarity). Exhibits histidine protein kinase activity.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 3

EC: .

EC: 3

>sp|P52175|NDKA2_BOVIN Nucleoside diphosphate kinase A 2 OS=Bos taurus GN=NME1-2 PE=1 SV=3

 Score =  173 bits (439), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 97/127 (76%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A + LL+ HY  LKD+PFF 
Sbjct: 3   NSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFA 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V   +     +
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDS 122

Query: 142 TASPNKE 148
             S  KE
Sbjct: 123 VESAEKE 129

Major role in the synthesis of nucleoside triphosphates other than ATP. Possesses nucleoside-diphosphate kinase, serine/threonine-specific protein kinase, geranyl and farnesyl pyrophosphate kinase, histidine protein kinase and 3'-5' exonuclease activities. Involved in cell proliferation, differentiation and development, signal transduction, G protein-coupled receptor endocytosis, and gene expression. Required for neural development including neural patterning and cell fate determination.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 6

>sp|Q50KA9|NDKA_CANFA Nucleoside diphosphate kinase A OS=Canis familiaris GN=NME1 PE=2 SV=1

 Score =  173 bits (439), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 95/127 (74%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQR LVG+I++RFE+KGF+LIAMK +QA + LL+ HY  LKD+PFF 
Sbjct: 3   NSERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFFA 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V   +     +
Sbjct: 63  GLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDS 122

Query: 142 TASPNKE 148
             S  KE
Sbjct: 123 VESAEKE 129

Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Possesses nucleoside-diphosphate kinase, serine/threonine-specific protein kinase, geranyl and farnesyl pyrophosphate kinase, histidine protein kinase and 3'-5' exonuclease activities. Involved in cell proliferation, differentiation and development, signal transduction, G protein-coupled receptor endocytosis, and gene expression. Required for neural development including neural patterning and cell fate determination.

Canis familiaris (taxid: 9615)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
281346107	288	hypothetical protein PANDA_015625 [Ailur	0.877	0.572	0.670	5e-60
301781232	270	PREDICTED: LOW QUALITY PROTEIN: nucleosi	0.856	0.596	0.658	5e-60
344285831	267	PREDICTED: nucleoside diphosphate kinase	0.840	0.591	0.658	2e-59
440910475	268	Nucleoside diphosphate kinase B, partial	0.840	0.589	0.652	9e-59
395531936	267	PREDICTED: nucleoside diphosphate kinase	0.840	0.591	0.652	1e-58
397493252	733	PREDICTED: U3 small nucleolar RNA-associ	0.840	0.215	0.646	1e-58
426237703	267	PREDICTED: nucleoside diphosphate kinase	0.840	0.591	0.640	4e-58
441641306	311	PREDICTED: nucleoside diphosphate kinase	0.840	0.508	0.646	5e-58
291405780	267	PREDICTED: NME1-NME2 protein-like [Oryct	0.840	0.591	0.646	6e-58
66392203	267	NME1-NME2 protein [Homo sapiens] gi|7374	0.840	0.591	0.646	7e-58

>gi|281346107|gb|EFB21691.1| hypothetical protein PANDA_015625 [Ailuropoda melanoleuca]

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 112/167 (67%), Positives = 134/167 (80%), Gaps = 2/167 (1%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQR LVG+I++RFE+KGF+LIAMK +QA + LL+ HY  LKD+PFF 
Sbjct: 4   NSERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFFA 63

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V     C   A
Sbjct: 64  GLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGSRPVCRPQA 123

Query: 142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
            A  ++ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF+QA +
Sbjct: 124 MA--HQERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASE 168

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301781232|ref|XP_002926027.1| PREDICTED: LOW QUALITY PROTEIN: nucleoside diphosphate kinase B-like [Ailuropoda melanoleuca]

 Score =  235 bits (600), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/167 (65%), Positives = 133/167 (79%), Gaps = 6/167 (3%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQR LVG+I++RFE+KGF+LIAMK +QA + LL+ HY  LKD+PFF 
Sbjct: 3   NSERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFFA 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C      +Q     
Sbjct: 63  GLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFC------IQVGRXE 116

Query: 142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           +A  ++ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF+QA +
Sbjct: 117 SAMAHQERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASE 163

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344285831|ref|XP_003414663.1| PREDICTED: nucleoside diphosphate kinase B-like isoform 2 [Loxodonta africana]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/167 (65%), Positives = 131/167 (78%), Gaps = 9/167 (5%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG I++RFE+KGF+L+A+KF+QA + LL+ HY  LKD+PF+ 
Sbjct: 3   NSERTFIAIKPDGVQRGLVGDIIKRFEQKGFRLVALKFMQASEDLLKEHYIDLKDRPFYA 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V   +      
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTM------ 116

Query: 142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
               N ERTFI IKPDGVQRGLVG I++RFE+KGF+L+AMKFVQA +
Sbjct: 117 ---ANSERTFIAIKPDGVQRGLVGDIIKRFEQKGFRLVAMKFVQASE 160

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440910475|gb|ELR60269.1| Nucleoside diphosphate kinase B, partial [Bos grunniens mutus]

 Score =  231 bits (589), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 133/167 (79%), Gaps = 9/167 (5%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A + LL+ HY  LKD+PFF 
Sbjct: 4   NSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFA 63

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V   +  A   
Sbjct: 64  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMAHA--- 120

Query: 142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
                 ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF+QA +
Sbjct: 121 ------ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASE 161

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395531936|ref|XP_003768029.1| PREDICTED: nucleoside diphosphate kinase B [Sarcophilus harrisii]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/167 (65%), Positives = 130/167 (77%), Gaps = 9/167 (5%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVGKIV+RFE+KGF+L+ +KF+QA + LLR HY  LKD+PF+ 
Sbjct: 3   NSERTFIAIKPDGVQRGLVGKIVKRFEQKGFRLVGLKFMQASEDLLREHYIDLKDRPFYG 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V   +      
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRMMLGETNPADSKPGTIRGDFCIQVGRTM------ 116

Query: 142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
               N ERTFI IKPDGVQRGLVG I++RFE+KGF+L+ MKF++A +
Sbjct: 117 ---ANTERTFIAIKPDGVQRGLVGDIIKRFEQKGFRLVGMKFLRASE 160

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397493252|ref|XP_003817525.1| PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Pan paniscus]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/167 (64%), Positives = 131/167 (78%), Gaps = 9/167 (5%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+PFF 
Sbjct: 103 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 162

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V          
Sbjct: 163 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV---------G 213

Query: 142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
               N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 214 RTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 260

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426237703|ref|XP_004012797.1| PREDICTED: nucleoside diphosphate kinase A 1 isoform 1 [Ovis aries]

 Score =  229 bits (584), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 133/167 (79%), Gaps = 9/167 (5%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           + ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A + LL+ HY  LKD+PFF 
Sbjct: 3   SSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFA 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V   +  A   
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMAHA--- 119

Query: 142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
                 ERTFI IKPDGVQRGLVG++++RFE+KGF+L+AMKF+QA +
Sbjct: 120 ------ERTFIAIKPDGVQRGLVGEVIKRFEQKGFRLVAMKFLQASE 160

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|441641306|ref|XP_003272317.2| PREDICTED: nucleoside diphosphate kinase 2, chloroplastic-like isoform 3 [Nomascus leucogenys]

 Score =  229 bits (583), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 108/167 (64%), Positives = 131/167 (78%), Gaps = 9/167 (5%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+PFF 
Sbjct: 47  NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 106

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V          
Sbjct: 107 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV---------G 157

Query: 142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
               N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 158 RTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 204

Source: Nomascus leucogenys

Species: Nomascus leucogenys

Genus: Nomascus

Family: Hylobatidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291405780|ref|XP_002719333.1| PREDICTED: NME1-NME2 protein-like [Oryctolagus cuniculus]

 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 108/167 (64%), Positives = 132/167 (79%), Gaps = 9/167 (5%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+++K +QA + LLR HY  LKD+PFF 
Sbjct: 3   NTERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVSLKLMQASEDLLREHYIDLKDRPFFP 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGDLC+ V          
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLCVQV---------G 113

Query: 142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
               + ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 114 RTMAHLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 160

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|66392203|ref|NP_001018146.1| NME1-NME2 protein [Homo sapiens] gi|73746297|gb|AAZ82097.1| NM23-LV [Homo sapiens] gi|124376250|gb|AAI33032.1| NME1-NME2 readthrough transcript [Homo sapiens] gi|124376672|gb|AAI33030.1| NME1-NME2 readthrough transcript [Homo sapiens]

 Score =  228 bits (582), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/167 (64%), Positives = 131/167 (78%), Gaps = 9/167 (5%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+PFF 
Sbjct: 3   NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+ V          
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV---------G 113

Query: 142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
               N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 114 RTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 160

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
UNIPROTKB|E2RC20	292	NME1 "Nucleoside diphosphate k	0.840	0.541	0.646	6.3e-53
UNIPROTKB|Q32Q12	292	NME1-NME2 "Nucleoside diphosph	0.840	0.541	0.634	1e-52
UNIPROTKB|J3KPD9	197	NME2 "Nucleoside diphosphate k	0.840	0.802	0.634	1e-52
ZFIN|ZDB-GENE-030131-7656	170	nme2a "non-metastatic cells 2a	0.792	0.876	0.58	9.6e-41
FB|FBgn0000150	153	awd "abnormal wing discs" [Dro	0.558	0.686	0.742	1.6e-40
UNIPROTKB|Q6XI71	150	awd "Nucleoside diphosphate ki	0.558	0.7	0.742	1.6e-40
UNIPROTKB|F1MPL4	114	NME2 "Nucleoside diphosphate k	0.547	0.903	0.737	6.1e-39
UNIPROTKB|Q3T0Q4	152	NME2 "Nucleoside diphosphate k	0.547	0.677	0.737	6.1e-39
RGD|70497	152	Nme1 "NME/NM23 nucleoside diph	0.558	0.690	0.714	9.9e-39
UNIPROTKB|P52174	152	NME1-1 "Nucleoside diphosphate	0.558	0.690	0.714	1.3e-38

UNIPROTKB|E2RC20 NME1 "Nucleoside diphosphate kinase" [Canis lupus familiaris (taxid:9615)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 108/167 (64%), Positives = 128/167 (76%)

Query:    22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             N ERTFI IKPDGVQR LVG+I++RFE+KGF+LIAMK +QA + LL+ HY  LKD+PFF 
Sbjct:    28 NSERTFIAIKPDGVQRSLVGEIIKRFEQKGFRLIAMKLIQASEDLLKEHYIDLKDRPFFA 87

Query:    82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDXXXXXXXXXXXXXYA 141
              L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD               
Sbjct:    88 GLVKYMQSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQV---------G 138

Query:   142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
              A  ++ERTFI IKPDGVQRGLVG IV+RFE+KGF+L+AMKF++A +
Sbjct:   139 RAMAHQERTFIAIKPDGVQRGLVGDIVKRFEQKGFRLVAMKFLRASE 185

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

UNIPROTKB|Q32Q12 NME1-NME2 "Nucleoside diphosphate kinase" [Homo sapiens (taxid:9606)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 106/167 (63%), Positives = 128/167 (76%)

Query:    22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+PFF 
Sbjct:    28 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 87

Query:    82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDXXXXXXXXXXXXXYA 141
              L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD               
Sbjct:    88 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMA----- 142

Query:   142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
                 N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct:   143 ----NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 185

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|J3KPD9 NME2 "Nucleoside diphosphate kinase B" [Homo sapiens (taxid:9606)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 106/167 (63%), Positives = 128/167 (76%)

Query:    22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+PFF 
Sbjct:     3 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 62

Query:    82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDXXXXXXXXXXXXXYA 141
              L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD               
Sbjct:    63 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRTMA----- 117

Query:   142 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
                 N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct:   118 ----NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 160

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

ZFIN|ZDB-GENE-030131-7656 nme2a "non-metastatic cells 2a, protein (NM23B) expressed in" [Danio rerio (taxid:7955)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 87/150 (58%), Positives = 102/150 (68%)

Query:    10 LLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRT 69
             LL C      S N+ERTFI IKPDGVQRGLVG+I++RFE+KGFKL+AMK +QAD+ LLR 
Sbjct:    17 LLDCHQTIPMSGNEERTFIAIKPDGVQRGLVGEIIKRFEQKGFKLVAMKLIQADEDLLRQ 76

Query:    70 HYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDXXX 129
             HY+ LKD+PFF  L+ YMS+GPVV MVWEG NVIK GR MLG TNP D  PGTIRGD   
Sbjct:    77 HYSDLKDRPFFPGLVSYMSAGPVVAMVWEGFNVIKTGRVMLGETNPIDSKPGTIRGDFCV 136

Query:   130 XXXXXXXXXXYATASPNKERTFIMIKPDGV 159
                        +  S N E   +  KPD +
Sbjct:   137 QVGRNIIHGSDSVESANTEIN-LWFKPDEI 165

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006165 "nucleoside diphosphate phosphorylation" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

FB|FBgn0000150 awd "abnormal wing discs" [Drosophila melanogaster (taxid:7227)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 78/105 (74%), Positives = 90/105 (85%)

Query:    22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             NKERTFIM+KPDGVQRGLVGKI++RFE+KGFKL+A+KF  A  +LL  HYA L  +PFF 
Sbjct:     4 NKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFP 63

Query:    82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
              L+ YM+SGPVVPMVWEGLNV+K GR MLGATNPAD +PGTIRGD
Sbjct:    64 GLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGD 108

GO:0004550 "nucleoside diphosphate kinase activity" evidence=ISS;NAS;IMP;IDA

GO:0007017 "microtubule-based process" evidence=IMP

GO:0006165 "nucleoside diphosphate phosphorylation" evidence=ISS;IMP

GO:0008017 "microtubule binding" evidence=IDA

GO:0005874 "microtubule" evidence=NAS;IDA

GO:0007067 "mitosis" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0016301 "kinase activity" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IMP;IDA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0006183 "GTP biosynthetic process" evidence=ISS;NAS

GO:0006241 "CTP biosynthetic process" evidence=ISS;NAS

GO:0006228 "UTP biosynthetic process" evidence=ISS;NAS

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IEP;IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IMP

GO:0034332 "adherens junction organization" evidence=IMP

GO:0035152 "regulation of tube architecture, open tracheal system" evidence=IMP

UNIPROTKB|Q6XI71 awd "Nucleoside diphosphate kinase" [Drosophila yakuba (taxid:7245)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 78/105 (74%), Positives = 90/105 (85%)

Query:    22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             NKERTFIM+KPDGVQRGLVGKI++RFE+KGFKL+A+KF  A  +LL  HYA L  +PFF 
Sbjct:     1 NKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFP 60

Query:    82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
              L+ YM+SGPVVPMVWEGLNV+K GR MLGATNPAD +PGTIRGD
Sbjct:    61 GLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGD 105

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0004550 "nucleoside diphosphate kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005880 "nuclear microtubule" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

UNIPROTKB|F1MPL4 NME2 "Nucleoside diphosphate kinase B" [Bos taurus (taxid:9913)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 76/103 (73%), Positives = 90/103 (87%)

Query:    24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
             ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF+QA ++LL+ HY  LKD+PFF  L
Sbjct:     5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPFFPGL 64

Query:    84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
             +KYM+SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD
Sbjct:    65 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

UNIPROTKB|Q3T0Q4 NME2 "Nucleoside diphosphate kinase B" [Bos taurus (taxid:9913)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 76/103 (73%), Positives = 90/103 (87%)

Query:    24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
             ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF+QA ++LL+ HY  LKD+PFF  L
Sbjct:     5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPFFPGL 64

Query:    84 IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
             +KYM+SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD
Sbjct:    65 VKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004673 "protein histidine kinase activity" evidence=IEA

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

RGD|70497 Nme1 "NME/NM23 nucleoside diphosphate kinase 1" [Rattus norvegicus (taxid:10116)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 75/105 (71%), Positives = 88/105 (83%)

Query:    22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+PFF 
Sbjct:     3 NSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFFS 62

Query:    82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
              L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD
Sbjct:    63 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107

GO:0000287 "magnesium ion binding" evidence=IEA;ISO

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0002762 "negative regulation of myeloid leukocyte differentiation" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0004536 "deoxyribonuclease activity" evidence=IEA;ISO

GO:0004550 "nucleoside diphosphate kinase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA;ISO

GO:0005525 "GTP binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005813 "centrosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006165 "nucleoside diphosphate phosphorylation" evidence=IDA

GO:0006183 "GTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0007595 "lactation" evidence=ISO

GO:0010629 "negative regulation of gene expression" evidence=IDA

GO:0010976 "positive regulation of neuron projection development" evidence=IMP

GO:0014075 "response to amine stimulus" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0019215 "intermediate filament binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IPI

GO:0021766 "hippocampus development" evidence=IEP

GO:0030879 "mammary gland development" evidence=ISO

GO:0033574 "response to testosterone stimulus" evidence=IEP

GO:0035690 "cellular response to drug" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0043015 "gamma-tubulin binding" evidence=IDA

GO:0043388 "positive regulation of DNA binding" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0050679 "positive regulation of epithelial cell proliferation" evidence=IEA;ISO

GO:0051591 "response to cAMP" evidence=IEP

GO:0071333 "cellular response to glucose stimulus" evidence=IEP

GO:0071398 "cellular response to fatty acid" evidence=IEP

GO:0005882 "intermediate filament" evidence=IDA

UNIPROTKB|P52174 NME1-1 "Nucleoside diphosphate kinase A 1" [Bos taurus (taxid:9913)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 75/105 (71%), Positives = 89/105 (84%)

Query:    22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             N ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A + LL+ HY  LKD+PFF 
Sbjct:     3 NSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFA 62

Query:    82 SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
              L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD
Sbjct:    63 GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006241 "CTP biosynthetic process" evidence=IEA

GO:0006228 "UTP biosynthetic process" evidence=IEA

GO:0006183 "GTP biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5V5M1	NDK_HALMA	2, ., 7, ., 4, ., 6	0.4724	0.6702	0.8181	yes	N/A
P15532	NDKA_MOUSE	2, ., 7, ., 4, ., 6	0.6299	0.6755	0.8355	yes	N/A
Q2EN76	NDKB_PIG	2, ., 7, ., 1, 3, ., 3	0.5955	0.7180	0.8881	yes	N/A
Q9KCB9	NDK_BACHD	2, ., 7, ., 4, ., 6	0.4797	0.7712	0.9863	yes	N/A
Q39839	NDK1_SOYBN	2, ., 7, ., 4, ., 6	0.544	0.6648	0.8389	yes	N/A
Q05982	NDKA_RAT	2, ., 7, ., 4, ., 6	0.6299	0.6755	0.8355	yes	N/A
Q50KA9	NDKA_CANFA	2, ., 7, ., 4, ., 6	0.6377	0.6755	0.8355	yes	N/A
Q5KXU2	NDK_GEOKA	2, ., 7, ., 4, ., 6	0.4961	0.6808	0.8590	yes	N/A
Q8TFN0	NDK_EMENI	2, ., 7, ., 4, ., 6	0.6090	0.5851	0.7189	yes	N/A
Q5RFH3	NDKB_PONAB	2, ., 7, ., 1, 3, ., 3	0.6029	0.7180	0.8881	yes	N/A
Q3AFJ7	NDK_CARHZ	2, ., 7, ., 4, ., 6	0.5365	0.6382	0.8053	yes	N/A
B9LPY5	NDK_HALLT	2, ., 7, ., 4, ., 6	0.4921	0.6648	0.7861	yes	N/A
Q7Z8P9	NDK_ASPFU	2, ., 7, ., 4, ., 6	0.6	0.5851	0.7189	yes	N/A
Q8DM56	NDK_THEEB	2, ., 7, ., 4, ., 6	0.5118	0.6542	0.82	yes	N/A
O29491	NDK_ARCFU	2, ., 7, ., 4, ., 6	0.5327	0.6329	0.7880	yes	N/A
P52174	NDKA1_BOVIN	2, ., 7, ., 4, ., 6	0.6299	0.6755	0.8355	yes	N/A
P36010	NDK_YEAST	2, ., 7, ., 4, ., 6	0.5818	0.5851	0.7189	yes	N/A
Q3T0Q4	NDKB_BOVIN	2, ., 7, ., 1, 3, ., 3	0.6102	0.7180	0.8881	yes	N/A
O57535	NDK_CHICK	2, ., 7, ., 4, ., 6	0.6964	0.5957	0.7320	yes	N/A
Q3IPM6	NDK_NATPD	2, ., 7, ., 4, ., 6	0.5833	0.5744	0.7058	yes	N/A
Q2JPL4	NDK_SYNJB	2, ., 7, ., 4, ., 6	0.5660	0.5638	0.7114	yes	N/A
Q18GB1	NDK_HALWD	2, ., 7, ., 4, ., 6	0.4545	0.6968	0.8291	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.921
4th Layer	2.7.4.6	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	188
cd04413	130	cd04413, NDPk_I, Nucleoside diphosphate kinase Gro	8e-70
pfam00334	135	pfam00334, NDK, Nucleoside diphosphate kinase	3e-65
PTZ00093	149	PTZ00093, PTZ00093, nucleoside diphosphate kinase,	1e-63
PRK00668	134	PRK00668, ndk, mulitfunctional nucleoside diphosph	2e-63
smart00562	135	smart00562, NDK, Enzymes that catalyze nonsubstrat	2e-58
COG0105	135	COG0105, Ndk, Nucleoside diphosphate kinase [Nucle	9e-58
PLN02619	238	PLN02619, PLN02619, nucleoside-diphosphate kinase	1e-47
cd00595	133	cd00595, NDPk, Nucleoside diphosphate kinases (NDP	2e-40
PRK14540	134	PRK14540, PRK14540, nucleoside diphosphate kinase;	1e-39
PRK14545	139	PRK14545, PRK14545, nucleoside diphosphate kinase;	3e-30
PRK14543	169	PRK14543, PRK14543, nucleoside diphosphate kinase;	3e-28
PRK14544	183	PRK14544, PRK14544, nucleoside diphosphate kinase;	8e-27
PRK14542	137	PRK14542, PRK14542, nucleoside diphosphate kinase;	2e-25
PRK14541	140	PRK14541, PRK14541, nucleoside diphosphate kinase;	2e-25
cd04413	130	cd04413, NDPk_I, Nucleoside diphosphate kinase Gro	7e-23
PRK00668	134	PRK00668, ndk, mulitfunctional nucleoside diphosph	7e-22
pfam00334	135	pfam00334, NDK, Nucleoside diphosphate kinase	2e-21
PTZ00093	149	PTZ00093, PTZ00093, nucleoside diphosphate kinase,	1e-20
COG0105	135	COG0105, Ndk, Nucleoside diphosphate kinase [Nucle	8e-20
smart00562	135	smart00562, NDK, Enzymes that catalyze nonsubstrat	4e-19
PLN02931	177	PLN02931, PLN02931, nucleoside diphosphate kinase	2e-18
cd04415	131	cd04415, NDPk7A, Nucleoside diphosphate kinase 7 d	2e-16
PLN02619	238	PLN02619, PLN02619, nucleoside-diphosphate kinase	3e-15
cd04412	134	cd04412, NDPk7B, Nucleoside diphosphate kinase 7 d	6e-15
cd04414	135	cd04414, NDPk6, Nucleoside diphosphate kinase 6 (N	7e-14
cd04418	132	cd04418, NDPk5, Nucleoside diphosphate kinase homo	2e-13
PRK14544	183	PRK14544, PRK14544, nucleoside diphosphate kinase;	6e-13
PRK14540	134	PRK14540, PRK14540, nucleoside diphosphate kinase;	1e-12
cd00595	133	cd00595, NDPk, Nucleoside diphosphate kinases (NDP	6e-12
cd04416	132	cd04416, NDPk_TX, NDP kinase domain of thioredoxin	2e-10
PRK14542	137	PRK14542, PRK14542, nucleoside diphosphate kinase;	5e-10
PRK14545	139	PRK14545, PRK14545, nucleoside diphosphate kinase;	3e-09
PRK14543	169	PRK14543, PRK14543, nucleoside diphosphate kinase;	4e-09
PRK14541	140	PRK14541, PRK14541, nucleoside diphosphate kinase;	1e-05
cd04412	134	cd04412, NDPk7B, Nucleoside diphosphate kinase 7 d	3e-04
PLN02931	177	PLN02931, PLN02931, nucleoside diphosphate kinase	0.003

>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate

 Score =  207 bits (530), Expect = 8e-70
 Identities = 62/106 (58%), Positives = 80/106 (75%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT ++IKPDGVQRGL+G+I+ RFE KG K++A+K +Q  ++L   HYA  K KPFF  L
Sbjct: 1   ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPEL 60

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           +++M+SGPVV MV EG N +K  R ++GATNPAD  PGTIRGD  L
Sbjct: 61  VEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADAAPGTIRGDFAL 106

The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that are most essential for catalysis. Length = 130

>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase

 Score =  196 bits (500), Expect = 3e-65
 Identities = 59/106 (55%), Positives = 79/106 (74%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT ++IKPD VQRGL+G+I+ RFE+KGFK++A+K +Q   +    HYA  K KPFF  L
Sbjct: 1   ERTLVIIKPDAVQRGLIGEIISRFEKKGFKIVALKMLQLTREQAEEHYAEHKGKPFFPGL 60

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           +++M+SGPVV MV EG N + V R ++GATNPA+  PGTIRGD  +
Sbjct: 61  VEFMTSGPVVAMVLEGENAVSVVRELMGATNPAEAAPGTIRGDFAV 106

Length = 135

>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic; Provisional

 Score =  192 bits (490), Expect = 1e-63
 Identities = 69/110 (62%), Positives = 87/110 (79%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           + ERTFIM+KPDGVQRGLVG+I++RFE+KG+KL+A+K +Q   ++   HY   K KPFF 
Sbjct: 1   SSERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFP 60

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLV 131
            L+KY+SSGPVV MVWEG NV+K GR +LGATNP +  PGTIRGD C+ V
Sbjct: 61  GLVKYISSGPVVCMVWEGKNVVKQGRKLLGATNPLESAPGTIRGDFCVDV 110

Length = 149

>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated

 Score =  191 bits (489), Expect = 2e-63
 Identities = 61/106 (57%), Positives = 79/106 (74%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTF +IKPD VQRGL+G+I+ RFE+KG K++A+K +Q   +L   HYA  K+KPFF  L
Sbjct: 2   ERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGEL 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           +++M+SGPVV MV EG N I   R ++GATNPA+  PGTIRGD  L
Sbjct: 62  VEFMTSGPVVVMVLEGENAIAKVRELMGATNPAEAAPGTIRGDFAL 107

Length = 134

>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates

 Score =  178 bits (455), Expect = 2e-58
 Identities = 55/106 (51%), Positives = 76/106 (71%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT  +IKPD VQRGL+G+I+ RFE KGFK++AMK +Q  ++     YA  + KPFF  L
Sbjct: 1   ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEEQAEEFYAEHEGKPFFNDL 60

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           +++M+SGPVV MV EG + +K  R+++G T+P +  PGTIRGD  L
Sbjct: 61  VEFMTSGPVVAMVLEGEDAVKTWRTLMGPTDPREAAPGTIRGDFGL 106

These enzymes play important roles in bacterial growth, signal transduction and pathogenicity. Length = 135

>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport and metabolism]

 Score =  177 bits (451), Expect = 9e-58
 Identities = 59/103 (57%), Positives = 77/103 (74%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT  +IKPD V+RGL+G+I+ RFE+KG K++A+K VQ   +L   HYA  K KPFF  L
Sbjct: 3   ERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGEL 62

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +++++SGPVV MV EG N I V R ++GATNPA+  PGTIRGD
Sbjct: 63  VEFITSGPVVAMVLEGENAISVVRKLMGATNPANAAPGTIRGD 105

Length = 135

>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase

 Score =  155 bits (393), Expect = 1e-47
 Identities = 64/108 (59%), Positives = 80/108 (74%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+A+K V    +  + HY  LK++PFF  L
Sbjct: 89  ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGL 148

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLV 131
             ++SSGPVV MVWEG  VIK GR ++GAT+P    PGTIRGDL ++V
Sbjct: 149 CDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVV 196

Length = 238

>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation

 Score =  133 bits (336), Expect = 2e-40
 Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 3/109 (2%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT  +IKPD V  GL+G+I+ R E+ GF+++AMK +   ++     Y   K +PFF  L
Sbjct: 1   ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDL 60

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCI---PGTIRGDLCL 129
           +++MSSGPVV M+ E  N +   R MLG TNP       PG++R D   
Sbjct: 61  VQFMSSGPVVAMILEKDNAVGEWREMLGPTNPEIARHLAPGSLRADFGT 109

They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic activity but also multiple divergent paralogous genes. The human genome codes for at least nine NDP kinases and can be classified into two groups, Groups I and II, according to their genomic architecture and distinct enzymatic activity. Group I isoforms (A-D) are well-conserved, catalytically active, and share 58-88% identity between each other, while Group II are more divergent, with only NDPk6 shown to be active. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. The hexamer can be viewed as trimer of dimers, while tetramers are dimers of dimers, with the dimerization interface conserved. Length = 133

>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional

 Score =  131 bits (331), Expect = 1e-39
 Identities = 55/107 (51%), Positives = 74/107 (69%)

Query: 23  KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFES 82
           KERTF+ +KPD V+R L+GKI+QRFE KGF+++ MK ++   ++   +Y   K K F+E 
Sbjct: 2   KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYER 61

Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           LI +M+SG +V MV EG N I   R M+G TNPA+  PGTIRGD  L
Sbjct: 62  LINFMTSGRIVAMVIEGENAISTVRKMIGKTNPAEAEPGTIRGDFGL 108

Length = 134

>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional

 Score =  107 bits (269), Expect = 3e-30
 Identities = 43/100 (43%), Positives = 62/100 (62%)

Query: 25  RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLI 84
           RTF MIKPD V+ G +G I+      GF+++AMK  Q       T YA   ++PF+  L+
Sbjct: 5   RTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELV 64

Query: 85  KYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIR 124
           ++MS GP+V  + E  N ++  R+++GATNPAD   GTIR
Sbjct: 65  EFMSRGPIVAAILEKENAVEDFRTLIGATNPADAAEGTIR 104

Length = 139

>gnl|CDD|237749 PRK14543, PRK14543, nucleoside diphosphate kinase; Provisional

 Score =  103 bits (257), Expect = 3e-28
 Identities = 47/109 (43%), Positives = 66/109 (60%), Gaps = 5/109 (4%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHY-----AALKDKP 78
           ++T  +IKPDGV+RGL+G +V RFE  G K++A K +  D  +   HY     A    + 
Sbjct: 6   QKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEA 65

Query: 79  FFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDL 127
            ++SLIK++SS PV   V EG+  ++V R   G+T P   IPGTIRGD 
Sbjct: 66  VWKSLIKFISSSPVFVFVVEGVESVEVVRKFCGSTEPKLAIPGTIRGDF 114

Length = 169

>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional

 Score = 99.9 bits (249), Expect = 8e-27
 Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 33/136 (24%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD------- 76
           ERT +++KPD V+RGLVG+I+ RFE+ G K++AMK V+A  + +   Y + ++       
Sbjct: 4   ERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGN 63

Query: 77  --------------------------KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSML 110
                                     K   ESL+KYM+SGP+V MV +G   ++V R ++
Sbjct: 64  KLLKAYQELGIDPRARLGTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLV 123

Query: 111 GATNPADCIPGTIRGD 126
           G T+P    PGTIRGD
Sbjct: 124 GPTSPHKAPPGTIRGD 139

Length = 183

>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional

 Score = 95.1 bits (236), Expect = 2e-25
 Identities = 43/102 (42%), Positives = 63/102 (61%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
            RTFIMIKPDGV+   VG I+QR E++GFK++ +K+++   +  +  Y     +PF+  L
Sbjct: 2   SRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDL 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRG 125
             YMSSGP+V    E  N +   R ++GAT+P +   GTIR 
Sbjct: 62  CNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIRA 103

Length = 137

>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional

 Score = 95.0 bits (236), Expect = 2e-25
 Identities = 39/101 (38%), Positives = 67/101 (66%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT  ++KPD V++ L+G ++ + E  GF+++AMK  +   +     YA  +++PF+  L
Sbjct: 2   ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGEL 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIR 124
           +++MSSGP VPM+ E  N +   R+++GAT+PA+   GT+R
Sbjct: 62  VEFMSSGPCVPMILEKENAVADFRTLIGATDPAEAAEGTVR 102

Length = 140

>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate

 Score = 88.3 bits (220), Expect = 7e-23
 Identities = 24/40 (60%), Positives = 33/40 (82%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ERT ++IKPDGVQRGL+G+I+ RFE KG K++A+K +Q  
Sbjct: 1   ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLT 40

The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that are most essential for catalysis. Length = 130

>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated

 Score = 85.9 bits (214), Expect = 7e-22
 Identities = 24/41 (58%), Positives = 33/41 (80%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           ERTF +IKPD VQRGL+G+I+ RFE+KG K++A+K +Q   
Sbjct: 2   ERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSR 42

Length = 134

>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase

 Score = 84.8 bits (211), Expect = 2e-21
 Identities = 24/40 (60%), Positives = 34/40 (85%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ERT ++IKPD VQRGL+G+I+ RFE+KGFK++A+K +Q  
Sbjct: 1   ERTLVIIKPDAVQRGLIGEIISRFEKKGFKIVALKMLQLT 40

Length = 135

>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic; Provisional

 Score = 82.8 bits (205), Expect = 1e-20
 Identities = 28/41 (68%), Positives = 38/41 (92%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQA 186
           + ERTFIM+KPDGVQRGLVG+I++RFE+KG+KL+A+K +Q 
Sbjct: 1   SSERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQP 41

Length = 149

>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport and metabolism]

 Score = 80.7 bits (200), Expect = 8e-20
 Identities = 23/40 (57%), Positives = 32/40 (80%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ERT  +IKPD V+RGL+G+I+ RFE+KG K++A+K VQ  
Sbjct: 3   ERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLS 42

Length = 135

>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates

 Score = 78.7 bits (195), Expect = 4e-19
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ERT  +IKPD VQRGL+G+I+ RFE KGFK++AMK +Q  
Sbjct: 1   ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLT 40

These enzymes play important roles in bacterial growth, signal transduction and pathogenicity. Length = 135

>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein

 Score = 77.9 bits (192), Expect = 2e-18
 Identities = 37/110 (33%), Positives = 57/110 (51%)

Query: 5   LLVCFLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 64
           LL+         ++ +  +ERT  MIKPDG+      +I +   E GF ++     Q D+
Sbjct: 11  LLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDE 70

Query: 65  KLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATN 114
                 YA    + FF SL+KYM+SGPV+ MV E  N +   R+++G T+
Sbjct: 71  DRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENAVSDWRTLIGPTD 120

Length = 177

>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B

 Score = 71.7 bits (176), Expect = 2e-16
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 5/105 (4%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E+T  +IKPD   +  +GKI+Q  E+ GF +   K  +   K  +  YA  + KPF+  L
Sbjct: 1   EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNEL 58

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADC---IPGTIRG 125
           +++M+SGP+V M   G + I   R +LG TN +      P +IR 
Sbjct: 59  VQFMTSGPIVAMELVGDDAISEWRKLLGPTNSSVARSDAPNSIRA 103

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner. Length = 131

>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase

 Score = 70.6 bits (173), Expect = 3e-15
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFV 184
           ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+A+K V
Sbjct: 89  ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVV 125

Length = 238

>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B

 Score = 67.7 bits (166), Expect = 6e-15
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 4/105 (3%)

Query: 25  RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD-KPFFESL 83
            T  +IKP  V  GL+G+I+Q+  ++GF++ A++                K   P   ++
Sbjct: 2   CTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAM 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPAD---CIPGTIRG 125
           +  ++SGP + +   G N +K  R   G  +P       P T+R 
Sbjct: 62  VDELTSGPCIALEIAGENAVKTFREFCGPFDPEIAKQLRPNTLRA 106

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner. Length = 134

>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues

 Score = 65.1 bits (159), Expect = 7e-14
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 24  ERTFIMIKPDGVQRGLV-GKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFES 82
           + T  +IKPD V   L    + Q     GF ++  K ++   +     YA  K K F++ 
Sbjct: 1   QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDR 60

Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATN---PADCIPGTIRG 125
           L+ +M+SGP   ++    N IK  R+++G T         P +IRG
Sbjct: 61  LVSFMTSGPSWALILAHENAIKTWRALMGPTKVFRARASAPDSIRG 106

NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors. Length = 135

>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT  +IKPD V +    +I     E GF ++  + +Q   +     YA    K FF  L
Sbjct: 1   ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHL 58

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATN 114
           + YMSSGP+V MV    N I   + +LG TN
Sbjct: 59  VAYMSSGPIVAMVLARHNAISYWKELLGPTN 89

It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5). Length = 132

>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional

 Score = 63.7 bits (155), Expect = 6e-13
 Identities = 23/39 (58%), Positives = 33/39 (84%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQA 186
           ERT +++KPD V+RGLVG+I+ RFE+ G K++AMK V+A
Sbjct: 4   ERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKA 42

Length = 183

>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional

 Score = 61.8 bits (150), Expect = 1e-12
 Identities = 23/41 (56%), Positives = 33/41 (80%)

Query: 147 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           KERTF+ +KPD V+R L+GKI+QRFE KGF+++ MK ++  
Sbjct: 2   KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLT 42

Length = 134

>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation

 Score = 59.7 bits (145), Expect = 6e-12
 Identities = 19/40 (47%), Positives = 28/40 (70%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ERT  +IKPD V  GL+G+I+ R E+ GF+++AMK +   
Sbjct: 1   ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLT 40

They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic activity but also multiple divergent paralogous genes. The human genome codes for at least nine NDP kinases and can be classified into two groups, Groups I and II, according to their genomic architecture and distinct enzymatic activity. Group I isoforms (A-D) are well-conserved, catalytically active, and share 58-88% identity between each other, while Group II are more divergent, with only NDPk6 shown to be active. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. The hexamer can be viewed as trimer of dimers, while tetramers are dimers of dimers, with the dimerization interface conserved. Length = 133

>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 28/93 (30%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E T  +IKPD V      +I+++ +E GF+++A K +   ++  R  Y   +++ +FE L
Sbjct: 1   EYTLALIKPDAVAEK-KDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDL 59

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPA 116
           +++M+SGP + +V    N ++  R ++G T+P 
Sbjct: 60  VEFMTSGPSLILVLSKENAVEEWRELMGPTDPE 92

Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance. Length = 132

>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional

 Score = 54.7 bits (131), Expect = 5e-10
 Identities = 21/38 (55%), Positives = 31/38 (81%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
            RTFIMIKPDGV+   VG I+QR E++GFK++ +K+++
Sbjct: 2   SRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLK 39

Length = 137

>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional

 Score = 52.6 bits (126), Expect = 3e-09
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 149 RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           RTF MIKPD V+ G +G I+      GF+++AMK  Q
Sbjct: 5   RTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQ 41

Length = 139

>gnl|CDD|237749 PRK14543, PRK14543, nucleoside diphosphate kinase; Provisional

 Score = 53.0 bits (127), Expect = 4e-09
 Identities = 20/40 (50%), Positives = 29/40 (72%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ++T  +IKPDGV+RGL+G +V RFE  G K++A K +  D
Sbjct: 6   QKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVD 45

Length = 169

>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 15/35 (42%), Positives = 26/35 (74%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           ERT  ++KPD V++ L+G ++ + E  GF+++AMK
Sbjct: 2   ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMK 36

Length = 140

>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 149 RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
            T  +IKP  V  GL+G+I+Q+  ++GF++ A++      
Sbjct: 2   CTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTR 41

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner. Length = 134

>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 19/69 (27%), Positives = 30/69 (43%)

Query: 119 IPGTIRGDLCLLVCCLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKL 178
           I  +    L LL+         ++ +  +ERT  MIKPDG+      +I +   E GF +
Sbjct: 1   ISRSTLQPLFLLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSI 60

Query: 179 IAMKFVQAD 187
           +     Q D
Sbjct: 61  VKEMTTQLD 69

Length = 177

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
COG0105	135	Ndk Nucleoside diphosphate kinase [Nucleotide tran	100.0
PRK14542	137	nucleoside diphosphate kinase; Provisional	100.0
PRK14541	140	nucleoside diphosphate kinase; Provisional	100.0
PTZ00093	149	nucleoside diphosphate kinase, cytosolic; Provisio	100.0
PRK14545	139	nucleoside diphosphate kinase; Provisional	100.0
PRK14540	134	nucleoside diphosphate kinase; Provisional	100.0
cd04415	131	NDPk7A Nucleoside diphosphate kinase 7 domain A (N	100.0
PLN02931	177	nucleoside diphosphate kinase family protein	100.0
PRK00668	134	ndk mulitfunctional nucleoside diphosphate kinase/	100.0
cd04413	130	NDPk_I Nucleoside diphosphate kinase Group I (NDPk	100.0
PLN02619	238	nucleoside-diphosphate kinase	100.0
PRK14543	169	nucleoside diphosphate kinase; Provisional	100.0
cd04412	134	NDPk7B Nucleoside diphosphate kinase 7 domain B (N	100.0
cd04418	132	NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP	100.0
cd04414	135	NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase	100.0
cd00595	133	NDPk Nucleoside diphosphate kinases (NDP kinases,	100.0
cd04416	132	NDPk_TX NDP kinase domain of thioredoxin domain-co	100.0
PF00334	135	NDK: Nucleoside diphosphate kinase; InterPro: IPR0	100.0
smart00562	135	NDK These are enzymes that catalyze nonsubstrate s	100.0
PRK14544	183	nucleoside diphosphate kinase; Provisional	100.0
KOG0888|consensus	156		100.0
PLN02931	177	nucleoside diphosphate kinase family protein	98.97
PLN02619	238	nucleoside-diphosphate kinase	98.84
smart00676	104	DM10 Domains in hypothetical proteins in Drosophil	90.99

>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=8.4e-42  Score=254.42  Aligned_cols=125  Identities=50%  Similarity=0.824  Sum_probs=118.9

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||+++++++|+||++++++||+|+++||+++++++|++||.+|+++|||++|++||+|||+++++|+|+||
T Consensus         2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a   81 (135)
T COG0105           2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA   81 (135)
T ss_pred             cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhccCCCCC
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATASPNK  147 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~~~~~~~  147 (188)
                      |+.+|+++|+|||..|+|+|||+.||.+..+|..|.+++.+++..
T Consensus        82 i~~~R~l~GaTnp~~A~pGTIRgdfa~~~~~N~vHgSDs~esA~r  126 (135)
T COG0105          82 ISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPESAER  126 (135)
T ss_pred             HHHHHHHHCCCCcccCCCCeEeeehhcccCcceEEccCCHHHHhH
Confidence            999999999999999999999999999999998777776544433

>PRK14542 nucleoside diphosphate kinase; Provisional

Probab=100.00  E-value=4.8e-41  Score=256.68  Aligned_cols=119  Identities=36%  Similarity=0.580  Sum_probs=114.4

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      +|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|+||
T Consensus         1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~na   80 (137)
T PRK14542          1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNA   80 (137)
T ss_pred             CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence            48999999999999888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |++||+++||+||..|.|+|||++||.+.++|..|..++
T Consensus        81 v~~~R~l~Gpt~p~~A~p~siR~~fg~~~~~N~vH~Sds  119 (137)
T PRK14542         81 VLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDS  119 (137)
T ss_pred             HHHHHHHhCCCCchhCCCCCchHHhcCcccceeEECCCC
Confidence            999999999999999999999999999999997666654

>PRK14541 nucleoside diphosphate kinase; Provisional

Probab=100.00  E-value=2.5e-40  Score=253.65  Aligned_cols=119  Identities=33%  Similarity=0.584  Sum_probs=114.0

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|.|+||
T Consensus         1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~na   80 (140)
T PRK14541          1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENA   80 (140)
T ss_pred             CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcH
Confidence            48999999999998888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |++||+++||+||..|.|+|||++||.+..+|+.|..++
T Consensus        81 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vHgSds  119 (140)
T PRK14541         81 VADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDS  119 (140)
T ss_pred             HHHHHHHhCCCCchhCCCCCchHHhcccccceeEECCCC
Confidence            999999999999999999999999999999997665554

>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional

Probab=100.00  E-value=5.5e-40  Score=254.18  Aligned_cols=120  Identities=58%  Similarity=0.992  Sum_probs=114.7

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+++|+||
T Consensus         2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na   81 (149)
T PTZ00093          2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV   81 (149)
T ss_pred             CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence            58999999999999889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhcc
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYAT  142 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~~  142 (188)
                      |++||+++||+||..|.|+|||++||++..+|+.|..++.
T Consensus        82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~  121 (149)
T PTZ00093         82 VKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSV  121 (149)
T ss_pred             HHHHHHHhCCCCccccCCCcchhhhccccccceeecCCCH
Confidence            9999999999999999999999999999999976665543

>PRK14545 nucleoside diphosphate kinase; Provisional

Probab=100.00  E-value=4.6e-40  Score=252.01  Aligned_cols=120  Identities=36%  Similarity=0.580  Sum_probs=114.5

Q ss_pred             CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076          22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN  101 (188)
Q Consensus        22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n  101 (188)
                      ..|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|.|+|
T Consensus         2 ~~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~n   81 (139)
T PRK14545          2 AGNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKEN   81 (139)
T ss_pred             CcceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCC
Confidence            46899999999999988899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      ||++||+++||+||..|.|+|||++||.+..+|..|..++
T Consensus        82 av~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vH~Sds  121 (139)
T PRK14545         82 AVEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDS  121 (139)
T ss_pred             HHHHHHHHhCCCCcccCCCCChhHHhcccccceeEECCCC
Confidence            9999999999999999999999999999999986655543

>PRK14540 nucleoside diphosphate kinase; Provisional

Probab=100.00  E-value=1.2e-39  Score=248.35  Aligned_cols=119  Identities=47%  Similarity=0.777  Sum_probs=113.9

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+||
T Consensus         2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~na   81 (134)
T PRK14540          2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENA   81 (134)
T ss_pred             ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCCh
Confidence            58999999999999888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |++||+++||++|..|+|+|||+.||.+..+|..|..++
T Consensus        82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~Sds  120 (134)
T PRK14540         82 ISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDS  120 (134)
T ss_pred             HHHHHHHhCCCCcccCCCCcchhhhcccccceeEECCCC
Confidence            999999999999999999999999999999987665543

>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B

Probab=100.00  E-value=1.4e-39  Score=247.05  Aligned_cols=116  Identities=32%  Similarity=0.518  Sum_probs=111.0

Q ss_pred             ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076          24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI  103 (188)
Q Consensus        24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV  103 (188)
                      |+||+|||||++++  +|+||++|+++||.|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|.|+|||
T Consensus         1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav   78 (131)
T cd04415           1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAI   78 (131)
T ss_pred             CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence            69999999999986  8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhhc
Q psy6076         104 KVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       104 ~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      ++||+++||+||..|   .|+|||++||.+.++|..|..++
T Consensus        79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds  119 (131)
T cd04415          79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDS  119 (131)
T ss_pred             HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCC
Confidence            999999999999987   89999999999999997666654

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.

>PLN02931 nucleoside diphosphate kinase family protein

Probab=100.00  E-value=7.5e-39  Score=253.36  Aligned_cols=121  Identities=32%  Similarity=0.456  Sum_probs=114.5

Q ss_pred             CCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEee
Q psy6076          20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEG   99 (188)
Q Consensus        20 ~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g   99 (188)
                      .+..|+||+|||||++.++++|+|+++|+++||+|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|
T Consensus        26 ~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g  105 (177)
T PLN02931         26 ASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEK  105 (177)
T ss_pred             CCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEec
Confidence            35689999999999998888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhh
Q psy6076         100 LNVIKVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       100 ~naV~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      +|||++||+++||+||..|   +|+|||++||.+..+|..|..+
T Consensus       106 ~naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSD  149 (177)
T PLN02931        106 ENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSD  149 (177)
T ss_pred             CCHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCC
Confidence            9999999999999999987   6999999999999998655544

>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated

Probab=100.00  E-value=1.1e-38  Score=243.04  Aligned_cols=118  Identities=52%  Similarity=0.852  Sum_probs=113.0

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+|++|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+||
T Consensus         1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~na   80 (134)
T PRK00668          1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENA   80 (134)
T ss_pred             CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchH
Confidence            48999999999999888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |++||+++||+||..+.|+|||++||.+.++|+.|..+
T Consensus        81 v~~~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~sd  118 (134)
T PRK00668         81 IAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSD  118 (134)
T ss_pred             HHHHHHHhCCCCccccCCCcchhhhccccccccEECCC
Confidence            99999999999999999999999999999998655544

>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate

Probab=100.00  E-value=1.1e-38  Score=241.91  Aligned_cols=117  Identities=53%  Similarity=0.911  Sum_probs=112.4

Q ss_pred             ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076          24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI  103 (188)
Q Consensus        24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV  103 (188)
                      |+|++|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|.++|||++|+++|+|||+++|+|.|+|||
T Consensus         1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav   80 (130)
T cd04413           1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV   80 (130)
T ss_pred             CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence            68999999999988889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         104 KVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       104 ~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      ++||+++||+||+.++|+|||++||++..+|..|..+
T Consensus        81 ~~~r~l~Gp~~~~~a~p~slR~~~G~~~~~NavH~sd  117 (130)
T cd04413          81 KTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSD  117 (130)
T ss_pred             HHHHHHhCCCCccccCCCCchhhhcccccccceECCC
Confidence            9999999999999999999999999999999665554

The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that

>PLN02619 nucleoside-diphosphate kinase

Probab=100.00  E-value=8.7e-39  Score=261.23  Aligned_cols=125  Identities=51%  Similarity=0.895  Sum_probs=118.6

Q ss_pred             cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076          19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE   98 (188)
Q Consensus        19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~   98 (188)
                      .+...|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+
T Consensus        84 ~a~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~  163 (238)
T PLN02619         84 HAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWE  163 (238)
T ss_pred             ccchhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEE
Confidence            56679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhccC
Q psy6076          99 GLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATA  143 (188)
Q Consensus        99 g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~~~  143 (188)
                      |+|+|++||+++||+||..+.|+|||++||.+.++|..|..++.+
T Consensus       164 GenaV~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgSDS~E  208 (238)
T PLN02619        164 GEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE  208 (238)
T ss_pred             CCcHHHHHHHHhCCCCccccCCCcchhhhcccccceeeecCCCHH
Confidence            999999999999999999999999999999999999766655433

>PRK14543 nucleoside diphosphate kinase; Provisional

Probab=100.00  E-value=9.7e-39  Score=251.01  Aligned_cols=122  Identities=39%  Similarity=0.655  Sum_probs=113.9

Q ss_pred             cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhH-----HhcCCCchhhhhchhccCcEE
Q psy6076          19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYA-----ALKDKPFFESLIKYMSSGPVV   93 (188)
Q Consensus        19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~-----~~~~~~~~~~lv~~mtsGp~v   93 (188)
                      ++...|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.     +|+++|||++|++||+|||++
T Consensus         1 ~~~~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~v   80 (169)
T PRK14543          1 MSTLIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVF   80 (169)
T ss_pred             CCCccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeE
Confidence            456789999999999999999999999999999999999999999999999995     799999999999999999999


Q ss_pred             EEEEeeCchhHHHHHHhCCCCCCCCCCCCcccchhhh----------hhhhhhhhhh
Q psy6076          94 PMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLL----------VCCLLQCALY  140 (188)
Q Consensus        94 al~l~g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~----------~~~n~~~~~~  140 (188)
                      +|+|.|+|||++||+++||+||..|.|+|||++||.+          ..+|+.|+.+
T Consensus        81 alvl~g~naI~~~R~l~Gpt~p~~a~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SD  137 (169)
T PRK14543         81 VFVVEGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASA  137 (169)
T ss_pred             EEEEECCCHHHHHHHHhCCCCccccCCCcchhhhcccccccccccccceeeEEECCC
Confidence            9999999999999999999999999999999999986          5677655444

>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B

Probab=100.00  E-value=1.7e-38  Score=242.05  Aligned_cols=118  Identities=23%  Similarity=0.360  Sum_probs=112.7

Q ss_pred             ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCC-CchhhhhchhccCcEEEEEEeeCch
Q psy6076          24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDK-PFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~-~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      ++||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.++ +||++|+++|+|||+++|+|.|+||
T Consensus         1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~na   80 (134)
T cd04412           1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENA   80 (134)
T ss_pred             CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcH
Confidence            589999999999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhhc
Q psy6076         103 IKVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |++||+++||+||..|   +|+|||++||.+..+|..|+.++
T Consensus        81 v~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds  122 (134)
T cd04412          81 VKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDL  122 (134)
T ss_pred             HHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCC
Confidence            9999999999999877   79999999999999997666553

The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.

>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species

Probab=100.00  E-value=1.4e-38  Score=241.89  Aligned_cols=116  Identities=31%  Similarity=0.417  Sum_probs=110.6

Q ss_pred             ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076          24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI  103 (188)
Q Consensus        24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV  103 (188)
                      |+||+|||||++++  +|+||++|+++||+|+++||++||+++|++||.+|.+++||++|+++|+|||+++|+|.|+|||
T Consensus         1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV   78 (132)
T cd04418           1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAI   78 (132)
T ss_pred             CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence            68999999999987  8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhhc
Q psy6076         104 KVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       104 ~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      ++||+++||+||..|   .|+|||++||.+..+|..|..++
T Consensus        79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds  119 (132)
T cd04418          79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDS  119 (132)
T ss_pred             HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCC
Confidence            999999999999988   79999999999999987665553

It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).

>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues

Probab=100.00  E-value=5.8e-38  Score=239.41  Aligned_cols=117  Identities=27%  Similarity=0.378  Sum_probs=108.8

Q ss_pred             ceEEEEEcCccccCCch-HHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          24 ERTFIMIKPDGVQRGLV-GKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        24 e~Tl~lIKPd~~~~~~~-g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      |+||+|||||++++++. |.|++.|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+||
T Consensus         1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na   80 (135)
T cd04414           1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA   80 (135)
T ss_pred             CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence            69999999999998876 56777788999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhh
Q psy6076         103 IKVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |++||+++||+||..|   .|+|||++||++..+|..|..+
T Consensus        81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sd  121 (135)
T cd04414          81 IKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSD  121 (135)
T ss_pred             HHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCC
Confidence            9999999999999866   7999999999999998655554

NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.

>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation

Probab=100.00  E-value=9.3e-38  Score=237.66  Aligned_cols=117  Identities=40%  Similarity=0.655  Sum_probs=111.4

Q ss_pred             ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076          24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI  103 (188)
Q Consensus        24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV  103 (188)
                      |+|++|||||++.+|++|+||++|+++||.|+++||++||+++|++||.+|.++|||++|+++|+|||+++|+|.|+|||
T Consensus         1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av   80 (133)
T cd00595           1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAV   80 (133)
T ss_pred             CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChH
Confidence            68999999999998889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhh
Q psy6076         104 KVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       104 ~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      ++||+++||+||..|   .|+|||++||.+..+|..|..+
T Consensus        81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd  120 (133)
T cd00595          81 GEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSD  120 (133)
T ss_pred             HHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCC
Confidence            999999999999855   7999999999999999655554

They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a

>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively

Probab=100.00  E-value=7.1e-38  Score=238.07  Aligned_cols=116  Identities=26%  Similarity=0.478  Sum_probs=110.5

Q ss_pred             ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076          24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI  103 (188)
Q Consensus        24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV  103 (188)
                      |+||+|||||++.+ ++|+|+++|+++||.|+++||++||+++|++||.+|.++|||++|++||+|||+++|+|.|+|||
T Consensus         1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av   79 (132)
T cd04416           1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAV   79 (132)
T ss_pred             CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence            68999999999977 79999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhh
Q psy6076         104 KVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       104 ~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      ++||+++||+||..|   .|+|||++||.+..+|..|..+
T Consensus        80 ~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sd  119 (132)
T cd04416          80 EEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSS  119 (132)
T ss_pred             HHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCC
Confidence            999999999999987   8999999999999998655554

Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.

>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2

Probab=100.00  E-value=1.2e-36  Score=231.86  Aligned_cols=116  Identities=41%  Similarity=0.695  Sum_probs=104.4

Q ss_pred             ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076          24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI  103 (188)
Q Consensus        24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV  103 (188)
                      |+||+|||||++.++++|+||++|+++||+|+++||++|++++|++||..|.++++|+.++++|+|||+++|+|.|+|||
T Consensus         1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av   80 (135)
T PF00334_consen    1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAV   80 (135)
T ss_dssp             EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHH
T ss_pred             CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhh
Confidence            79999999999998889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhh
Q psy6076         104 KVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCAL  139 (188)
Q Consensus       104 ~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~  139 (188)
                      ++||+++||+||+.|+|+|||++||.+..+|..|..
T Consensus        81 ~~~r~l~Gp~dp~~a~p~slR~~~g~~~~~N~vH~s  116 (135)
T PF00334_consen   81 EKWRQLCGPTDPEEAAPGSLRARYGTDIIRNAVHGS  116 (135)
T ss_dssp             HHHHHHH--SSGGGSSTTSHHHHH-SSSTG-SEEE-
T ss_pred             HHHHHhcCCcchhhhccccchhceeecCCCCeEECC
Confidence            999999999999999999999999999988854443

7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....

>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates

Probab=100.00  E-value=2.8e-36  Score=229.97  Aligned_cols=117  Identities=49%  Similarity=0.837  Sum_probs=111.0

Q ss_pred             ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCchh
Q psy6076          24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVI  103 (188)
Q Consensus        24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~naV  103 (188)
                      |+|++|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|.+++||++|+++|+|||+++|+|.|+|||
T Consensus         1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav   80 (135)
T smart00562        1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAV   80 (135)
T ss_pred             CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHH
Confidence            68999999999988889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         104 KVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       104 ~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      ++||+++||++|..++|+|||++||.+..+|..|..+
T Consensus        81 ~~~r~l~Gp~~~~~~~p~slR~~~G~~~~~N~vH~sd  117 (135)
T smart00562       81 KTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSD  117 (135)
T ss_pred             HHHHHHhCCCChhhcCCcchHHhhcccccceeEECCC
Confidence            9999999999998889999999999998888544433

These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.

>PRK14544 nucleoside diphosphate kinase; Provisional

Probab=100.00  E-value=7.7e-36  Score=237.00  Aligned_cols=111  Identities=45%  Similarity=0.777  Sum_probs=105.7

Q ss_pred             CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHh--------------------------
Q psy6076          21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAAL--------------------------   74 (188)
Q Consensus        21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~--------------------------   74 (188)
                      +..|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|                          
T Consensus         1 ~~~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~   80 (183)
T PRK14544          1 MPIERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARL   80 (183)
T ss_pred             CCcceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccccccc
Confidence            357999999999999988999999999999999999999999999999999954                          


Q ss_pred             -------cCCCchhhhhchhccCcEEEEEEeeCchhHHHHHHhCCCCCCCCCCCCcccchhhhh
Q psy6076          75 -------KDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLV  131 (188)
Q Consensus        75 -------~~~~~~~~lv~~mtsGp~val~l~g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~  131 (188)
                             .+++||++|++||+|||+++|++.|+|||++||+++||++|..|.|+|||+.||.+.
T Consensus        81 ~~~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~P~TIR~~fg~~~  144 (183)
T PRK14544         81 GTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSIDS  144 (183)
T ss_pred             ccccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccCCCCchhhhcccc
Confidence                   679999999999999999999999999999999999999999999999999999873

>KOG0888|consensus

Probab=100.00  E-value=1e-35  Score=229.82  Aligned_cols=133  Identities=53%  Similarity=0.850  Sum_probs=121.4

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+|+++||||++++|++|+||.+++++||+|+++|+++++++++++||.+|+++|||+.|+.||+|||++||+++|.||
T Consensus         5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~   84 (156)
T KOG0888|consen    5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV   84 (156)
T ss_pred             hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhhccCCCCCceeEEEEcCc
Q psy6076         103 IKVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALYATASPNKERTFIMIKPD  157 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~~~~~~~~e~Tl~iIKP~  157 (188)
                      |+.||+++|||+|..|   .|+|||++||.+..+|..|..++.++  .+|-++++.|+
T Consensus        85 V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~s--A~rEi~~~F~~  140 (156)
T KOG0888|consen   85 VQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVES--AEREIKLWFPE  140 (156)
T ss_pred             HHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHH--HHHHHHhcCch
Confidence            9999999999999987   89999999999999986555554333  34556666665

>PLN02931 nucleoside diphosphate kinase family protein

Probab=98.97  E-value=6.3e-10  Score=88.43  Aligned_cols=46  Identities=33%  Similarity=0.553  Sum_probs=42.3

Q ss_pred             CCCCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076         143 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD  188 (188)
Q Consensus       143 ~~~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~  188 (188)
                      .+...|+|||+||||+++++++|+|+++|+++||+|+++|+++||+
T Consensus        25 ~~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~   70 (177)
T PLN02931         25 GASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDE   70 (177)
T ss_pred             CCCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCH
Confidence            3446889999999999999999999999999999999999999984

>PLN02619 nucleoside-diphosphate kinase

Probab=98.84  E-value=2.1e-09  Score=88.59  Aligned_cols=44  Identities=61%  Similarity=1.019  Sum_probs=41.4

Q ss_pred             CCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076         145 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD  188 (188)
Q Consensus       145 ~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~  188 (188)
                      ...|+||++||||++++|++|+|+++|+++||+|+++|++++|+
T Consensus        86 ~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~  129 (238)
T PLN02619         86 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSK  129 (238)
T ss_pred             chhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCH
Confidence            35789999999999999999999999999999999999999974

>smart00676 DM10 Domains in hypothetical proteins in Drosophila, C

Probab=90.99  E-value=0.033  Score=40.54  Aligned_cols=16  Identities=19%  Similarity=-0.118  Sum_probs=14.5

Q ss_pred             CCcchhhhhhhhhhhc
Q psy6076           3 SKLLVCFLLQCALYAT   18 (188)
Q Consensus         3 ~~~~~g~~~~i~sr~~   18 (188)
                      +||+||++|+||+|++
T Consensus        72 ~Dl~vG~~v~i~gr~f   87 (104)
T smart00676       72 SDLNVGTTINVFGRQF   87 (104)
T ss_pred             HHcCCCCEEEEeCEEE
Confidence            5899999999999875

elegans and mammals. Occurs singly in some nucleoside diphosphate kinases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
1ndl_A	153	The Awd Nucleotide Diphosphate Kinase From Drosophi		1e-44
1ndl_A	153	The Awd Nucleotide Diphosphate Kinase From Drosophi		1e-14
1nsq_A	153	Mechanism Of Phosphate Transfer By Nucleoside Dipho		1e-44
1nsq_A	153	Mechanism Of Phosphate Transfer By Nucleoside Dipho		1e-14
1bhn_A	152	Nucleoside Diphosphate Kinase Isoform A From Bovine		2e-42
1bhn_A	152	Nucleoside Diphosphate Kinase Isoform A From Bovine		3e-13
1be4_A	151	Nucleoside Diphosphate Kinase Isoform B From Bovine		4e-42
1be4_A	151	Nucleoside Diphosphate Kinase Isoform B From Bovine		5e-13
1jxv_A	152	Crystal Structure Of Human Nucleoside Diphosphate K		7e-42
1jxv_A	152	Crystal Structure Of Human Nucleoside Diphosphate K		1e-12
2hve_A	152	S120g Mutant Of Human Nucleoside Diphosphate Kinase		8e-42
2hve_A	152	S120g Mutant Of Human Nucleoside Diphosphate Kinase		1e-12
3l7u_A	172	Crystal Structure Of Human Nm23-H1 Length = 172		8e-42
3l7u_A	172	Crystal Structure Of Human Nm23-H1 Length = 172		9e-13
1nsk_R	152	The Crystal Structure Of A Human Nucleoside Diphosp		1e-41
1nsk_R	152	The Crystal Structure Of A Human Nucleoside Diphosp		4e-13
1nue_A	151	X-ray Structure Of Nm23 Human Nucleoside Diphosphat		1e-41
1nue_A	151	X-ray Structure Of Nm23 Human Nucleoside Diphosphat		4e-13
1ucn_A	152	X-Ray Structure Of Human Nucleoside Diphosphate Kin		2e-41
1ucn_A	152	X-Ray Structure Of Human Nucleoside Diphosphate Kin		9e-13
3bbc_A	151	Crystal Structure Of R88a Mutant Of The Nm23-H2 Tra		7e-41
3bbc_A	151	Crystal Structure Of R88a Mutant Of The Nm23-H2 Tra		4e-13
1zs6_A	169	Structure Of Human Nucleoside-diphosphate Kinase 3		1e-39
1zs6_A	169	Structure Of Human Nucleoside-diphosphate Kinase 3		7e-12
3ngr_A	151	Crystal Structure Of Leishmania Nucleoside Diphosph		5e-36
3ngr_A	151	Crystal Structure Of Leishmania Nucleoside Diphosph		4e-11
4fkx_A	161	Crystal Structure Of Nucleoside Diphosphate Kinase		2e-35
4fkx_A	161	Crystal Structure Of Nucleoside Diphosphate Kinase		4e-10
4f36_A	157	Crystal Structure Of Nucleoside Diphosphate Kinase		2e-35
4f36_A	157	Crystal Structure Of Nucleoside Diphosphate Kinase		4e-10
3b54_A	161	Saccharomyces Cerevisiae Nucleoside Diphosphate Kin		6e-35
3b54_A	161	Saccharomyces Cerevisiae Nucleoside Diphosphate Kin		3e-12
1xiq_A	157	Plasmodium Falciparum Nucleoside Diphosphate Kinase		7e-35
1xiq_A	157	Plasmodium Falciparum Nucleoside Diphosphate Kinase		1e-10
3prv_A	157	Nucleoside Diphosphate Kinase B From Trypanosoma Cr		1e-34
3prv_A	157	Nucleoside Diphosphate Kinase B From Trypanosoma Cr		1e-10
1ehw_A	162	Human Nucleoside Diphosphate Kinase 4 Length = 162		1e-34
1ehw_A	162	Human Nucleoside Diphosphate Kinase 4 Length = 162		7e-10
3r9l_A	155	Crystal Structure Of Nucleoside Diphosphate Kinase		3e-34
3r9l_A	155	Crystal Structure Of Nucleoside Diphosphate Kinase		4e-12
2zua_A	174	Crystal Structure Of Nucleoside Diphosphate Kinase		5e-33
2zua_A	174	Crystal Structure Of Nucleoside Diphosphate Kinase		6e-11
2az3_A	164	Structure Of A Halophilic Nucleoside Diphosphate Ki		3e-32
2az3_A	164	Structure Of A Halophilic Nucleoside Diphosphate Ki		4e-10
1pku_A	150	Crystal Structure Of Nucleoside Diphosphate Kinase		4e-32
1pku_A	150	Crystal Structure Of Nucleoside Diphosphate Kinase		9e-10
2az1_A	181	Structure Of A Halophilic Nucleoside Diphosphate Ki		5e-32
2az1_A	181	Structure Of A Halophilic Nucleoside Diphosphate Ki		4e-10
1wkj_A	137	Crystal Structure Of Nucleoside Diphosphate Kinase		8e-32
1wkj_A	137	Crystal Structure Of Nucleoside Diphosphate Kinase		5e-10
1u8w_A	149	Crystal Structure Of Arabidopsis Thaliana Nucleosid		7e-31
1u8w_A	149	Crystal Structure Of Arabidopsis Thaliana Nucleosid		4e-09
1w7w_A	182	Structure And Mutational Analysis Of A Plant Mitoch		9e-31
1w7w_A	182	Structure And Mutational Analysis Of A Plant Mitoch		3e-09
1s57_A	153	Crystal Structure Of Nucleoside Diphosphate Kinase		5e-30
1s57_A	153	Crystal Structure Of Nucleoside Diphosphate Kinase		2e-10
3js9_A	156	Crystal Structure Of Nucleoside Diphosphate Kinase		8e-30
3js9_A	156	Crystal Structure Of Nucleoside Diphosphate Kinase		3e-10
2vu5_A	148	Crystal Structure Of Pndk From Bacillus Anthracis L		4e-29
2vu5_A	148	Crystal Structure Of Pndk From Bacillus Anthracis L		9e-09
1lwx_A	155	Azt Diphosphate Binding To Nucleoside Diphosphate K		9e-29
1lwx_A	155	Azt Diphosphate Binding To Nucleoside Diphosphate K		2e-09
1hlw_A	155	Structure Of The H122a Mutant Of The Nucleoside Dip		9e-29
1hlw_A	155	Structure Of The H122a Mutant Of The Nucleoside Dip		2e-09
1b4s_A	155	Structure Of Nucleoside Diphosphate Kinase H122g Mu		1e-28
1b4s_A	155	Structure Of Nucleoside Diphosphate Kinase H122g Mu		2e-09
1npk_A	154	Refined X-Ray Structure Of Dictyostelium Nucleoside		1e-28
1npk_A	154	Refined X-Ray Structure Of Dictyostelium Nucleoside		2e-09
1ndp_A	155	Adenosine 5'-Diphosphate Binding And The Active Sit		1e-28
1ndp_A	155	Adenosine 5'-Diphosphate Binding And The Active Sit		2e-09
1nsp_A	155	Mechanism Of Phosphate Transfer By Nucleoside Dipho		1e-28
1nsp_A	155	Mechanism Of Phosphate Transfer By Nucleoside Dipho		2e-09
1ndk_A	155	X-Ray Structure Of Nucleoside Diphosphate Kinase Le		1e-28
1ndk_A	155	X-Ray Structure Of Nucleoside Diphosphate Kinase Le		2e-09
1mn7_A	155	Ndp Kinase Mutant (H122g;n119s;f64w) In Complex Wit		4e-28
1mn7_A	155	Ndp Kinase Mutant (H122g;n119s;f64w) In Complex Wit		2e-09
1hhq_A	155	Role Of Active Site Resiude Lys16 In Nucleoside Dip		4e-28
1hhq_A	155	Role Of Active Site Resiude Lys16 In Nucleoside Dip		8e-09
2cwk_A	160	Crystal Structure Of Nucleotide Diphosphate Kinase		9e-28
2cwk_A	160	Crystal Structure Of Nucleotide Diphosphate Kinase		6e-08
1leo_A	150	P100s Nucleoside Diphosphate Kinase Length = 150		1e-27
1leo_A	150	P100s Nucleoside Diphosphate Kinase Length = 150		3e-09
1ncl_A	150	Thermal Stability Of Hexameric And Tetrameric Nucle		2e-27
1ncl_A	150	Thermal Stability Of Hexameric And Tetrameric Nucle		3e-09
1pae_X	155	Nucleoside Diphosphate Kinase Length = 155		3e-27
1pae_X	155	Nucleoside Diphosphate Kinase Length = 155		2e-09
3q83_A	157	Crystal Structure Of Staphylococcus Aureus Nucleosi		7e-27
3q83_A	157	Crystal Structure Of Staphylococcus Aureus Nucleosi		4e-08
1nb2_A	150	Crystal Structure Of Nucleoside Diphosphate Kinase		3e-26
1nb2_A	150	Crystal Structure Of Nucleoside Diphosphate Kinase		1e-09
3mpd_A	151	Crystal Structure Of Nucleoside Diphosphate Kinase		3e-25
3mpd_A	151	Crystal Structure Of Nucleoside Diphosphate Kinase		1e-07
2nck_R	144	Crystal Structure Of Myxococcus Xanthus Nucleoside		1e-24
2nck_R	144	Crystal Structure Of Myxococcus Xanthus Nucleoside		4e-07
2hur_A	142	Escherichia Coli Nucleoside Diphosphate Kinase Leng		6e-23
2hur_A	142	Escherichia Coli Nucleoside Diphosphate Kinase Leng		9e-05
3vgs_A	141	Wild-Type Nucleoside Diphosphate Kinase Derived Fro		8e-23
3vgs_A	141	Wild-Type Nucleoside Diphosphate Kinase Derived Fro		4e-05
3vgu_A	141	E134a Mutant Nucleoside Diphosphate Kinase Derived		8e-23
3vgu_A	141	E134a Mutant Nucleoside Diphosphate Kinase Derived		4e-05
1k44_A	136	Mycobacterium Tuberculosis Nucleoside Diphosphate K		2e-22
1k44_A	136	Mycobacterium Tuberculosis Nucleoside Diphosphate K		7e-06
3pj9_A	140	Crystal Structure Of A Nucleoside Diphosphate Kinas		3e-22
3pj9_A	140	Crystal Structure Of A Nucleoside Diphosphate Kinas		3e-06
3em1_A	146	Crystal Structure Of The Mimivirus Ndk +kpn-N62l Do		8e-21
3em1_A	146	Crystal Structure Of The Mimivirus Ndk +kpn-N62l Do		8e-06
3ddi_A	146	Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R1		8e-21
3ddi_A	146	Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R1		8e-06
4di6_A	190	Crystal Structure Of Nucleoside-Diphosphate Kinase		2e-20
4di6_A	190	Crystal Structure Of Nucleoside-Diphosphate Kinase		2e-06
3ejm_A	146	Crystal Structure Of The Mimivirus Ndk +kpn Mutant		5e-20
3ejm_A	146	Crystal Structure Of The Mimivirus Ndk +kpn Mutant		8e-06
3emt_A	146	Crystal Structure Of The Mimivirus Ndk +kpn-R107g D		5e-20
3emt_A	146	Crystal Structure Of The Mimivirus Ndk +kpn-R107g D		8e-06
4dut_A	145	The Structure Of Nucleoside Diphosphate Kinase (Ndk		4e-18
4dut_A	145	The Structure Of Nucleoside Diphosphate Kinase (Ndk		3e-04
3fbf_A	142	Crystal Structure Of The Mimivirus Ndk N62l Mutant		3e-17
3fbf_A	142	Crystal Structure Of The Mimivirus Ndk N62l Mutant		1e-05
3fbe_A	142	Crystal Structure Of The Mimivirus Ndk N62l-R107g D		3e-17
3fbe_A	142	Crystal Structure Of The Mimivirus Ndk N62l-R107g D		1e-05
3ztq_A	142	Hexagonal Crystal Form P61 Of The Aquifex Aeolicus		9e-17
3ztq_A	142	Hexagonal Crystal Form P61 Of The Aquifex Aeolicus		1e-04
2b8p_A	157	Crystal Structure Of Acanthamoeba Polyphaga Mimivir		1e-16
2b8p_A	157	Crystal Structure Of Acanthamoeba Polyphaga Mimivir		7e-06
2b8q_A	142	X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus		2e-16
2b8q_A	142	X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus		1e-05
3evw_A	142	Crystal Structure Of The Mimivirus Ndk R107g Mutant		2e-16
3evw_A	142	Crystal Structure Of The Mimivirus Ndk R107g Mutant		1e-05
1xqi_A	195	Crystal Structure Analysis Of An Ndp Kinase From Py		2e-13
1xqi_A	195	Crystal Structure Analysis Of An Ndp Kinase From Py		6e-06

>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila Length = 153

Iteration: 1
 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 78/107 (72%), Positives = 91/107 (85%)
Query: 20  SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
           + NKERTFIM+KPDGVQRGLVGKI++RFE+KGFKL+A+KF  A  +LL  HYA L  +PF
Sbjct: 2   AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPF 61
Query: 80  FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           F  L+ YM+SGPVVPMVWEGLNV+K GR MLGATNPAD +PGTIRGD
Sbjct: 62  FPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGD 108

>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila Length = 153

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 40/44 (90%)
Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           + NKERTFIM+KPDGVQRGLVGKI++RFE+KGFKL+A+KF  A 
Sbjct: 2   AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWAS 45

>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate Kinase: X- Ray Structures Of A Phospho-Histidine Intermediate Of The Enzymes From Drosophila And Dictyostelium Length = 153

Iteration: 1
 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 78/107 (72%), Positives = 91/107 (85%)
Query: 20  SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
           + NKERTFIM+KPDGVQRGLVGKI++RFE+KGFKL+A+KF  A  +LL  HYA L  +PF
Sbjct: 2   AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPF 61
Query: 80  FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           F  L+ YM+SGPVVPMVWEGLNV+K GR MLGATNPAD +PGTIRGD
Sbjct: 62  FPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGD 108

>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate Kinase: X- Ray Structures Of A Phospho-Histidine Intermediate Of The Enzymes From Drosophila And Dictyostelium Length = 153

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 40/44 (90%)
Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           + NKERTFIM+KPDGVQRGLVGKI++RFE+KGFKL+A+KF  A 
Sbjct: 2   AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWAS 45

>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina Length = 152

Iteration: 1
 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 89/105 (84%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A + LL+ HY  LKD+PFF 
Sbjct: 3   NSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFA 62
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107

>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina Length = 152

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 40/43 (93%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           N ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A +
Sbjct: 3   NSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASE 45

>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina Length = 151

Iteration: 1
 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 89/105 (84%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A + LL+ HY  LKD+PFF 
Sbjct: 2   NSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFA 61
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD
Sbjct: 62  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 106

>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina Length = 151

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 40/43 (93%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           N ERTFI IKPDGVQRGL+G+I++RFE+KGF+L+AMKF++A +
Sbjct: 2   NSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASE 44

>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A Length = 152

Iteration: 1
 Score =  166 bits (420), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 88/105 (83%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+PFF 
Sbjct: 3   NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 62
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107

>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A Length = 152

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 39/43 (90%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA +
Sbjct: 3   NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE 45

>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A Complexed With Adp Length = 152

Iteration: 1
 Score =  166 bits (420), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 88/105 (83%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+PFF 
Sbjct: 3   NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 62
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107

>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A Complexed With Adp Length = 152

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 39/43 (90%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA +
Sbjct: 3   NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE 45

>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1 Length = 172

Iteration: 1
 Score =  166 bits (419), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 88/105 (83%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+PFF 
Sbjct: 23  NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 82
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD
Sbjct: 83  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 127

>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1 Length = 172

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 39/43 (90%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA +
Sbjct: 23  NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE 65

>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate Kinase, Nm23-H2 Length = 152

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 90/105 (85%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A ++ L+ HY  LKD+PFF 
Sbjct: 3   NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 62
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+KYM+SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD
Sbjct: 63  GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107

>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate Kinase, Nm23-H2 Length = 152

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 3   NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 45

>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate Kinase B Complexed With Gdp At 2 Angstroms Resolution Length = 151

Iteration: 1
 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/105 (71%), Positives = 90/105 (85%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A ++ L+ HY  LKD+PFF 
Sbjct: 2   NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+KYM+SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD
Sbjct: 62  GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 106

>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate Kinase B Complexed With Gdp At 2 Angstroms Resolution Length = 151

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 2   NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 44

>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A Complexed With Adp At 2 A Resolution Length = 152

Iteration: 1
 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 74/105 (70%), Positives = 88/105 (83%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+P+F 
Sbjct: 3   NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPWFA 62
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD
Sbjct: 63  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGD 107

>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A Complexed With Adp At 2 A Resolution Length = 152

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 39/43 (90%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA +
Sbjct: 3   NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE 45

>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2 Transcription Factor Length = 151

Iteration: 1
 Score =  162 bits (411), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 74/105 (70%), Positives = 89/105 (84%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A ++ L+ HY  LKD+PFF 
Sbjct: 2   NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+KYM+SGPVV MVWEGLNV+K G  MLG TNPAD  PGTIRGD
Sbjct: 62  GLVKYMNSGPVVAMVWEGLNVVKTGAVMLGETNPADSKPGTIRGD 106

>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2 Transcription Factor Length = 151

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 40/43 (93%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 2   NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 44

>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3 Length = 169

Iteration: 1
 Score =  158 bits (400), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 91/110 (82%)
Query: 17  ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
           A  +   ERTF+ +KPDGVQR LVG+IV+RFE KGFKL+A+K VQA ++LLR HYA L++
Sbjct: 15  AACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRE 74
Query: 77  KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +PF+  L+KYM+SGPVV MVW+GL+V++  R+++GATNPAD  PGTIRGD
Sbjct: 75  RPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGD 124

>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3 Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           A  +   ERTF+ +KPDGVQR LVG+IV+RFE KGFKL+A+K VQA +
Sbjct: 15  AACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASE 62

>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate Kinase B With Unordered Nucleotide-Binding Loop. Length = 151

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 82/105 (78%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           + ERTFI +KPDGVQRGLVG+I+ RFE KG+KL+A+K +Q   +  + HY  L  KPFF 
Sbjct: 2   SSERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFP 61
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +L+KY SSGP+V MVWEG NV+K GR +LGATNPAD  PGTIRGD
Sbjct: 62  ALVKYFSSGPIVCMVWEGKNVVKSGRVLLGATNPADSQPGTIRGD 106

>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate Kinase B With Unordered Nucleotide-Binding Loop. Length = 151

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 35/40 (87%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           + ERTFI +KPDGVQRGLVG+I+ RFE KG+KL+A+K +Q
Sbjct: 2   SSERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQ 41

>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From Trypanosoma Brucei Bound To Cdp Length = 161

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 80/103 (77%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTFI +KPDGVQR LVG+I++RFE KG+KL+ +K +Q  ++  + HY  L  KPF+  L
Sbjct: 12  ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 71
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           + Y SSGP+V MVWEGL V+K GR +LGATNPAD +PGTIRGD
Sbjct: 72  VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGD 114

>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From Trypanosoma Brucei Bound To Cdp Length = 161

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           ERTFI +KPDGVQR LVG+I++RFE KG+KL+ +K +Q
Sbjct: 12  ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQ 49

>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From Trypanosoma Brucei, Apo Form Length = 157

Iteration: 1
 Score =  144 bits (364), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 80/103 (77%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTFI +KPDGVQR LVG+I++RFE KG+KL+ +K +Q  ++  + HY  L  KPF+  L
Sbjct: 8   ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 67
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           + Y SSGP+V MVWEGL V+K GR +LGATNPAD +PGTIRGD
Sbjct: 68  VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGD 110

>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From Trypanosoma Brucei, Apo Form Length = 157

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           ERTFI +KPDGVQR LVG+I++RFE KG+KL+ +K +Q
Sbjct: 8   ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQ 45

>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase Length = 161

Iteration: 1
 Score =  143 bits (360), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 82/107 (76%)
Query: 20  SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
           S   ERTFI +KPDGVQRGLV +I+ RFE+KG+KL+A+K V+ADDKLL  HYA    KPF
Sbjct: 10  SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPF 69
Query: 80  FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           F  ++ +M SGP++  VWEG +V++ GR++LGATNP    PGTIRGD
Sbjct: 70  FPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGD 116

>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase Length = 161

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 38/45 (84%)
Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           S   ERTFI +KPDGVQRGLV +I+ RFE+KG+KL+A+K V+ADD
Sbjct: 10  SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADD 54

>pdb|1XIQ|A Chain A, Plasmodium Falciparum Nucleoside Diphosphate Kinase B Length = 157

Iteration: 1
 Score =  143 bits (360), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 89/125 (71%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E++FIMIKPDGVQRGLVG I++RFE+KG+KLIA+K +   +++L+ HY  L D+PFF++L
Sbjct: 10  EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNL 69
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDXXXXXXXXXXXXXYATA 143
           + Y+S GPVV MVWEG++++K GR ++G TNP     GTIRGD              + A
Sbjct: 70  VAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVA 129
Query: 144 SPNKE 148
           S NKE
Sbjct: 130 SANKE 134

>pdb|1XIQ|A Chain A, Plasmodium Falciparum Nucleoside Diphosphate Kinase B Length = 157

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 35/38 (92%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           E++FIMIKPDGVQRGLVG I++RFE+KG+KLIA+K + 
Sbjct: 10  EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLN 47

>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi Length = 157

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             ERTFI +KPDGVQR LVG+I+QRFE+KG+KL+A+K +Q   +  + HY  L  KPF++
Sbjct: 8   TSERTFIAVKPDGVQRCLVGEIIQRFEKKGYKLVALKMLQPSAEQAQQHYIDLASKPFYK 67
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+ Y SSGP+V MVWEG  V+K GR +LGATNPAD +PGTIRGD
Sbjct: 68  DLVAYFSSGPIVGMVWEGKGVVKGGRVLLGATNPADSLPGTIRGD 112

>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi Length = 157

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 35/40 (87%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
             ERTFI +KPDGVQR LVG+I+QRFE+KG+KL+A+K +Q
Sbjct: 8   TSERTFIAVKPDGVQRCLVGEIIQRFEKKGYKLVALKMLQ 47

>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4 Length = 162

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 80/105 (76%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
            +ERT + +KPDGVQR LVG ++QRFE +GF L+ MK +QA + +L  HY  L+ KPF+ 
Sbjct: 23  TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYP 82
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +LI+YMSSGPVV MVWEG NV++  R+M+G T+ A+  PGTIRGD
Sbjct: 83  ALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGD 127

>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4 Length = 162

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
            +ERT + +KPDGVQR LVG ++QRFE +GF L+ MK +QA +
Sbjct: 23  TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPE 65

>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Giardia Lamblia Featuring A Disordered Dinucleotide Binding Site Length = 155

Iteration: 1
 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 77/104 (74%)
Query: 23  KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFES 82
           +ERTF+M+KPDGVQRGLVG+I+ RFE +GFKL+AMKF      L+  HY     +PFF  
Sbjct: 7   RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAG 66
Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           L K++SSGPV  MVWEG NV+ + R+M+G T PA+  PGTIRGD
Sbjct: 67  LCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESAPGTIRGD 110

>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Giardia Lamblia Featuring A Disordered Dinucleotide Binding Site Length = 155

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 35/37 (94%)
Query: 147 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           +ERTF+M+KPDGVQRGLVG+I+ RFE +GFKL+AMKF
Sbjct: 7   RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKF 43

>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Haloarcula Quadrata Length = 174

Iteration: 1
 Score =  137 bits (344), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 78/105 (74%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             ERTF+M+KPDGVQRGL+G IV RFE++G K++  KF+Q D +L   HY   +DKPFF+
Sbjct: 23  EHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDKPFFD 82
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+ +++SGPV  MVWEG +  +  R+M+G T+PA+  PGTIRGD
Sbjct: 83  GLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESAPGTIRGD 127

>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Haloarcula Quadrata Length = 174

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 34/42 (80%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
             ERTF+M+KPDGVQRGL+G IV RFE++G K++  KF+Q D
Sbjct: 23  EHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQID 64

>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase From Halobacterium Salinarum In Complex With Cdp Length = 164

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 78/107 (72%)
Query: 20  SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
           + + ERTF+M+KPDGVQRGL+G IV R E KG K++  KF++ D++L   HYA  +DKPF
Sbjct: 5   TDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPF 64
Query: 80  FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           F+ L+ +++SGPV  MVWEG +  +  R ++GAT+  D  PGTIRGD
Sbjct: 65  FDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGD 111

>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase From Halobacterium Salinarum In Complex With Cdp Length = 164

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           + + ERTF+M+KPDGVQRGL+G IV R E KG K++  KF++ D+
Sbjct: 5   TDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDE 49

>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Rice Length = 150

Iteration: 1
 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 76/103 (73%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E++FIMIKPDGVQRGL+G I+ RFE+KGF L  MKF+  +    + HYA L DKPFF  L
Sbjct: 3   EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 62
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           ++Y+ SGPVV MVWEG +V+  GR ++GAT P +  PGTIR D
Sbjct: 63  VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRAD 105

>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Rice Length = 150

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           E++FIMIKPDGVQRGL+G I+ RFE+KGF L  MKF+  +
Sbjct: 3   EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVE 42

>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase From Halobacterium Salinarum Length = 181

Iteration: 1
 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 56/107 (52%), Positives = 78/107 (72%)
Query: 20  SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
           + + ERTF+M+KPDGVQRGL+G IV R E KG K++  KF++ D++L   HYA  +DKPF
Sbjct: 22  TDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPF 81
Query: 80  FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           F+ L+ +++SGPV  MVWEG +  +  R ++GAT+  D  PGTIRGD
Sbjct: 82  FDGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGD 128

>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase From Halobacterium Salinarum Length = 181

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           + + ERTF+M+KPDGVQRGL+G IV R E KG K++  KF++ D+
Sbjct: 22  TDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDE 66

>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Thermus Thermophilus Hb8 Length = 137

Iteration: 1
 Score =  132 bits (333), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 79/103 (76%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTF+MIKPDGV+RGLVG+I+ RFE KGF++ A+K +Q   +L   HYA  ++KPFF  L
Sbjct: 2   ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGL 61
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +++++SGPVV MV EG  V+   R M+GAT+P D +PGTIRGD
Sbjct: 62  VRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGD 104

>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Thermus Thermophilus Hb8 Length = 137

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 34/38 (89%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           ERTF+MIKPDGV+RGLVG+I+ RFE KGF++ A+K +Q
Sbjct: 2   ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQ 39

>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside Diphosphate Kinase 1 Length = 149

Iteration: 1
 Score =  129 bits (325), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 73/103 (70%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E+TFIMIKPDGVQRGL+G+++ RFE+KGF L  +K +  +      HY  L  K FF  L
Sbjct: 2   EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 61
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           + Y+ SGPVV M+WEG NV+  GR ++GATNPA   PGTIRGD
Sbjct: 62  VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGD 104

>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside Diphosphate Kinase 1 Length = 149

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 33/40 (82%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           E+TFIMIKPDGVQRGL+G+++ RFE+KGF L  +K +  +
Sbjct: 2   EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVE 41

>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial Nucleoside Diphosphate Kinase: Identification Of Residues Involved In Serine Phosphorylation And Oligomerization. Length = 182

Iteration: 1
 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 74/103 (71%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+ +K +    +  + HY  LK++PFF  L
Sbjct: 33  ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGL 92
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
             ++SSGPV+ MVWEG  VI  GR ++GAT+P    PGTIRGD
Sbjct: 93  CDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGD 135

>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial Nucleoside Diphosphate Kinase: Identification Of Residues Involved In Serine Phosphorylation And Oligomerization. Length = 182

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+ +K
Sbjct: 33  ERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIK 67

>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From Arabidopsis Length = 153

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 74/103 (71%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E T+IM+KPDG+QRGLVG+I+ RFE+KGFKLI +K  Q   +L   HY  L  K FF +L
Sbjct: 6   EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNL 65
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           I+Y++SGPVV M WEG+ V+   R ++G T+P    PGTIRGD
Sbjct: 66  IEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGD 108

>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From Arabidopsis Length = 153

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           E T+IM+KPDG+QRGLVG+I+ RFE+KGFKLI +K  Q
Sbjct: 6   EETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQ 43

>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase Family Protein From Babesia Bovis Length = 156

Iteration: 1
 Score =  126 bits (316), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 75/103 (72%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT+IM+KPDGVQRGL+G+I++RFE KG KLIA KF      ++  HY   KDKPFF+ L
Sbjct: 10  ERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDL 69
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
             ++S GPV  M+WEG   IK+GR+++G T+P +   GTIRGD
Sbjct: 70  CDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGD 112

>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase Family Protein From Babesia Bovis Length = 156

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 33/36 (91%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           ERT+IM+KPDGVQRGL+G+I++RFE KG KLIA KF
Sbjct: 10  ERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKF 45

>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis Length = 148

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 74/103 (71%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E+TF+M+KPDGVQR  +G+IV RFE+KGF+L+  K +Q   ++   HYA  ++KPFF  L
Sbjct: 2   EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGEL 61
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           + +++SGPV  MVW+G  V+   R+M+G T P +  PGTIRGD
Sbjct: 62  VDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGD 104

>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis Length = 148

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 32/38 (84%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           E+TF+M+KPDGVQR  +G+IV RFE+KGF+L+  K +Q
Sbjct: 2   EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQ 39

>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase Length = 155

Iteration: 1
 Score =  122 bits (307), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17  ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K+
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77  KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +PFF  L+ +++SGPVV MV+EG  V+   R M+G TNP    PG+IRGD
Sbjct: 62  RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111

>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase Length = 155

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43

>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside Diphosphate Kinase Length = 155

Iteration: 1
 Score =  122 bits (307), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17  ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K+
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77  KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +PFF  L+ +++SGPVV MV+EG  V+   R M+G TNP    PG+IRGD
Sbjct: 62  RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111

>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside Diphosphate Kinase Length = 155

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43

>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant Length = 155

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17  ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K+
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77  KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +PFF  L+ +++SGPVV MV+EG  V+   R M+G TNP    PG+IRGD
Sbjct: 62  RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111

>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant Length = 155

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43

>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside Diphosphate Kinase At 1,8 Angstroms Resolution Length = 154

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17  ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K+
Sbjct: 1   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 60
Query: 77  KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +PFF  L+ +++SGPVV MV+EG  V+   R M+G TNP    PG+IRGD
Sbjct: 61  RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 110

>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside Diphosphate Kinase At 1,8 Angstroms Resolution Length = 154

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 1   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 42

>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of Nucleoside Diphosphate Kinase Length = 155

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17  ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K+
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77  KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +PFF  L+ +++SGPVV MV+EG  V+   R M+G TNP    PG+IRGD
Sbjct: 62  RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111

>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of Nucleoside Diphosphate Kinase Length = 155

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43

>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate Kinase: X- Ray Structures Of A Phospho-Histidine Intermediate Of The Enzymes From Drosophila And Dictyostelium Length = 155

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17  ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K+
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77  KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +PFF  L+ +++SGPVV MV+EG  V+   R M+G TNP    PG+IRGD
Sbjct: 62  RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111

>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate Kinase: X- Ray Structures Of A Phospho-Histidine Intermediate Of The Enzymes From Drosophila And Dictyostelium Length = 155

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43

>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase Length = 155

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 77/110 (70%)
Query: 17  ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K+
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77  KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +PFF  L+ +++SGPVV MV+EG  V+   R M+G TNP    PG+IRGD
Sbjct: 62  RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111

>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase Length = 155

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43

>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With Abazttp Length = 155

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 77/110 (70%)
Query: 17  ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K+
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77  KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +P+F  L+ +++SGPVV MV+EG  V+   R M+G TNP    PG+IRGD
Sbjct: 62  RPWFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111

>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With Abazttp Length = 155

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43

>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside Diphosphate Kinase Length = 155

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 76/110 (69%)
Query: 17  ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
           +T   NKERTF+ + PDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K+
Sbjct: 2   STNKVNKERTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77  KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +PFF  L+ +++SGPVV MV+EG  V+   R M+G TNP    PG+IRGD
Sbjct: 62  RPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGD 111

>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside Diphosphate Kinase Length = 155

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           +T   NKERTF+ + PDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2   STNKVNKERTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLK 43

>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From Pyrococcus Horikoshii Length = 160

Iteration: 1
 Score =  119 bits (298), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 73/103 (70%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT ++IKPD V RGL+G+I+ RFE+KG K++ MK +  D +L   HY   ++KPFF++L
Sbjct: 8   ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKAL 67
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           I Y++  PVV MV EG   ++V R M GAT+P D  PGTIRGD
Sbjct: 68  IDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGD 110

>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From Pyrococcus Horikoshii Length = 160

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ERT ++IKPD V RGL+G+I+ RFE+KG K++ MK +  D
Sbjct: 8   ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWID 47

>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase Length = 150

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 74/105 (70%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K++PFF 
Sbjct: 2   NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFG 61
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+ +++SGPVV MV+EG  V+   R M+G TN     PG+IRGD
Sbjct: 62  GLVSFITSGPVVAMVFEGKGVVASARLMIGVTNSLASAPGSIRGD 106

>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase Length = 150

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 32/37 (86%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2   NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 38

>pdb|1NCL|A Chain A, Thermal Stability Of Hexameric And Tetrameric Nucleoside, Diphosphate Kinases Length = 150

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 74/105 (70%)
Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K++PFF 
Sbjct: 2   NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFG 61
Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            L+ +++SGPVV MV+EG  V+   R M+G TNP     G+IRGD
Sbjct: 62  GLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAGGSIRGD 106

>pdb|1NCL|A Chain A, Thermal Stability Of Hexameric And Tetrameric Nucleoside, Diphosphate Kinases Length = 150

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 32/37 (86%)
Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2   NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 38

>pdb|1PAE|X Chain X, Nucleoside Diphosphate Kinase Length = 155

Iteration: 1
 Score =  117 bits (294), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 75/110 (68%)
Query: 17  ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD 76
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K+
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKE 61
Query: 77  KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +PFF  L+ +++SGPVV  V+EG  V+   R  +G TNP    PG+IRGD
Sbjct: 62  RPFFGGLVSFITSGPVVAXVFEGKGVVASARLXIGVTNPLASAPGSIRGD 111

>pdb|1PAE|X Chain X, Nucleoside Diphosphate Kinase Length = 155

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           +T   NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K
Sbjct: 2   STNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLK 43

>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside Diphosphate Kinase Length = 157

Iteration: 1
 Score =  116 bits (290), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 71/103 (68%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTF+MIKPD VQR L+G+++ R E KG KL+  K +Q   +L  THY   + KPF+  L
Sbjct: 2   ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDL 61
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           I +++S PV  MV EG + + V R ++G+TNP++  PG+IRGD
Sbjct: 62  ISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGD 104

>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside Diphosphate Kinase Length = 157

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           ERTF+MIKPD VQR L+G+++ R E KG KL+  K +Q
Sbjct: 2   ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQ 39

>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Bacillus Halodenitrificans Length = 150

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 69/104 (66%)
Query: 23  KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFES 82
           KERTF+M+KPDGVQR LVG++V+RFE KG KL   K +         HYA L   PFF  
Sbjct: 2   KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61
Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           L+   +SGPV  MVWEGLN     R +LGATNP+D  PGTIRGD
Sbjct: 62  LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGD 105

>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Bacillus Halodenitrificans Length = 150

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 147 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFV 184
           KERTF+M+KPDGVQR LVG++V+RFE KG KL   K +
Sbjct: 2   KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLM 39

>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Encephalitozoon Cuniculi, Cubic Form, Apo Length = 151

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 69/103 (66%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTFIMIKPD ++R L+ +I+QRFEEKG  L A K V    ++L THY+ L   PFF  +
Sbjct: 6   ERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEM 65
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           ++ M SG V+ MVW G + + +GR ++G TNP     GTIRGD
Sbjct: 66  VEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGD 108

>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Encephalitozoon Cuniculi, Cubic Form, Apo Length = 151

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFV 184
           ERTFIMIKPD ++R L+ +I+QRFEEKG  L A K V
Sbjct: 6   ERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCV 42

>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside Diphosphate Kinase And Its Interaction With A Nucleotide Substrate At 2.0 Angstroms Resolution Length = 144

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 68/103 (66%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT  +IKPDG+++G++GKI+ RFEEKG K +A++            YA  K +PFF+ L
Sbjct: 3   ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +++M SGPVV MV EG N +   R ++GATNPA    GTIR D
Sbjct: 63  VQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKD 105

>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside Diphosphate Kinase And Its Interaction With A Nucleotide Substrate At 2.0 Angstroms Resolution Length = 144

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           ERT  +IKPDG+++G++GKI+ RFEEKG K +A++ 
Sbjct: 3   ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRL 38

>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase Length = 142

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 67/103 (65%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTF +IKP+ V + ++G I  RFE  GFK++  K +    +  R  YA    KPFF+ L
Sbjct: 3   ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGL 62
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +++M+SGP+V  V EG N ++  R +LGATNPA+ + GT+R D
Sbjct: 63  VEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRAD 105

>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase Length = 142

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           ERTF +IKP+ V + ++G I  RFE  GFK++  K + 
Sbjct: 3   ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLH 40

>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From Halomonas Sp. 593 Length = 141

Iteration: 1
 Score =  103 bits (256), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 65/103 (63%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT  +IKPD V + ++G+I  RFE+ G K++A K +Q   +     YA  K++PFF  L
Sbjct: 4   ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDL 63
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           + +M+SGPVV  V EG N I   R ++GATNP +   GTIR D
Sbjct: 64  VGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRAD 106

>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From Halomonas Sp. 593 Length = 141

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           ERT  +IKPD V + ++G+I  RFE+ G K++A K +Q
Sbjct: 4   ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQ 41

>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From Halomonas Sp. 593 Length = 141

Iteration: 1
 Score =  102 bits (255), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 65/103 (63%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT  +IKPD V + ++G+I  RFE+ G K++A K +Q   +     YA  K++PFF  L
Sbjct: 4   ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDL 63
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           + +M+SGPVV  V EG N I   R ++GATNP +   GTIR D
Sbjct: 64  VGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRAD 106

>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From Halomonas Sp. 593 Length = 141

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           ERT  +IKPD V + ++G+I  RFE+ G K++A K +Q
Sbjct: 4   ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQ 41

>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase Length = 136

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT ++IKPDG++R L+G+I+ R E KG  + A++      +L   HYA  + KPFF SL
Sbjct: 3   ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPAD-CIPGTIRGD 126
           +++++SGPVV  + EG   I   R + G T+P     PGTIRGD
Sbjct: 63  LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGD 106

>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           ERT ++IKPDG++R L+G+I+ R E KG  + A++ 
Sbjct: 3   ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQL 38

>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From Campylobacter Jejuni Length = 140

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 67/103 (65%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E+T  +IKPD V++G++GKI+ RFE  G ++ AMK VQ   +     YA  K++PFF+ L
Sbjct: 5   EKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKDL 64
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +++M SGPVV  + EG   +   R ++GATNP +   GTIR D
Sbjct: 65  VEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIRAD 107

>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From Campylobacter Jejuni Length = 140

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           E+T  +IKPD V++G++GKI+ RFE  G ++ AMK VQ
Sbjct: 5   EKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQ 42

>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double Mutant Complexed With Dtdp Length = 146

Iteration: 1
 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF  +A   L+  HY    ++ +F  
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           L  +M SGP++ +V+EG + I   R + G TNP    PGTIRGD
Sbjct: 67  LCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGD 110

>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double Mutant Complexed With Dtdp Length = 146

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42

>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g Triple Mutant Complexed With Tdp Length = 146

Iteration: 1
 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF  +A   L+  HY    ++ +F  
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           L  +M SGP++ +V+EG + I   R + G TNP    PGTIRGD
Sbjct: 67  LCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGD 110

>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g Triple Mutant Complexed With Tdp Length = 146

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42

>pdb|4DI6|A Chain A, Crystal Structure Of Nucleoside-Diphosphate Kinase From Borrelia Burgdorferi Length = 190

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 5/108 (4%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHY-----AALKDKP 78
           ++T  ++KPDGV+RGL+G +V RFE  G K++A K +  D+ L + HY          + 
Sbjct: 27  QKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEA 86
Query: 79  FFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            + SLIK++S+ PV   V EG+  I+V R + GAT P   IPGTIRGD
Sbjct: 87  VWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGD 134

>pdb|4DI6|A Chain A, Crystal Structure Of Nucleoside-Diphosphate Kinase From Borrelia Burgdorferi Length = 190

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           ++T  ++KPDGV+RGL+G +V RFE  G K++A K +  D+
Sbjct: 27  QKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDE 67

>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant Complexed With Gdp Length = 146

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF  +A   L+  HY    ++ +F  
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
              +M SGP++ +V+EG + I   R + G TNP    PGTIRGD
Sbjct: 67  NCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGD 110

>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant Complexed With Gdp Length = 146

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42

>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double Mutant Complexed With Dgdp Length = 146

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF  +A   L+  HY    ++ +F  
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
              +M SGP++ +V+EG + I   R + G TNP    PGTIRGD
Sbjct: 67  NCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGD 110

>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double Mutant Complexed With Dgdp Length = 146

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42

>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis Length = 145

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 60/103 (58%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT  +IKPD V + ++G+I  RFE  G K++A +            YA   ++PFF+ L
Sbjct: 8   ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDL 67
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           +++M SGPV+  V EG + I   R ++GAT+P     GTIR D
Sbjct: 68  VEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKGTIRAD 110

>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis Length = 145

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           ERT  +IKPD V + ++G+I  RFE  G K++A +   
Sbjct: 8   ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAH 45

>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant Complexed With Dtdp Length = 142

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF  +A   L+  HY    ++ +F  
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           L  +M SGP++ +V+EG + I   R + G        PGTIRGD
Sbjct: 67  LCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGD 106

>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant Complexed With Dtdp Length = 142

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42

>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double Mutant Complexed With Gdp Length = 142

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF  +A   L+  HY    ++ +F  
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
           L  +M SGP++ +V+EG + I   R + G        PGTIRGD
Sbjct: 67  LCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGD 106

>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double Mutant Complexed With Gdp Length = 142

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42

>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus Nucleoside Diphosphate Kinase Length = 142

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT I++KPD +++G +GKI+ RF ++GF++ A+K  +   +     Y   +++PFF+ L
Sbjct: 4   ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQEL 63
Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADC---IPGTIRG 125
           +++MSSGPVV  V EG + IK  R ++G T+  +     P +IR 
Sbjct: 64  VEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRA 108

>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus Nucleoside Diphosphate Kinase Length = 142

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 29/35 (82%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK 182
           ERT I++KPD +++G +GKI+ RF ++GF++ A+K
Sbjct: 4   ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALK 38

>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk, The First Viral Nucleoside Diphosphate Kinase Length = 157

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 10  LLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLR 68
           L   +LY  A    +RT ++IKPD  +R LV +I+ R E+K FK+++MKF  +A   L+ 
Sbjct: 10  LESTSLYKKAGL--QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIE 67
Query: 69  THYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
            HY    ++ +F     +M SGP++ +V+EG + I   R + G        PGTIRGD
Sbjct: 68  QHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGD 121

>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk, The First Viral Nucleoside Diphosphate Kinase Length = 157

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF
Sbjct: 22  QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 57

>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus Nucleoside Diphosphate Kinase Complexed With Tdp Length = 142

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF  +A   L+  HY    ++ +F  
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
              +M SGP++ +V+EG + I   R + G        PGTIRGD
Sbjct: 67  NCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGD 106

>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus Nucleoside Diphosphate Kinase Complexed With Tdp Length = 142

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42

>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant Complexed With Dtdp Length = 142

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFFES 82
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF  +A   L+  HY    ++ +F  
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFND 66
Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGD 126
              +M SGP++ +V+EG + I   R + G        PGTIRGD
Sbjct: 67  NCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGD 106

>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant Complexed With Dtdp Length = 142

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF 183
           +RT ++IKPD  +R LV +I+ R E+K FK+++MKF
Sbjct: 7   QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKF 42

>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From Pyrobaculum Aerophilum Length = 195

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 33/136 (24%)
Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD------- 76
           E+T +++KPD V RGLV +I+ RF++ G K++A+K V+A  + +   Y + ++       
Sbjct: 16  EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKXVKASPEEIERFYPSSEEWLQSAGQ 75
Query: 77  ---KPFFE-----------------------SLIKYMSSGPVVPMVWEGLNVIKVGRSML 110
              K + E                       +L+KY +SGP V  V +G   +++ R ++
Sbjct: 76  KLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYXTSGPNVVXVLKGNRAVEIVRKLV 135
Query: 111 GATNPADCIPGTIRGD 126
           G T+P    PGTIRGD
Sbjct: 136 GPTSPHSAPPGTIRGD 151

>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From Pyrobaculum Aerophilum Length = 195

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQA 186
           E+T +++KPD V RGLV +I+ RF++ G K++A+K V+A
Sbjct: 16  EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKXVKA 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
3l7u_A	172	Nucleoside diphosphate kinase A; ATP-binding, nucl	2e-74
3l7u_A	172	Nucleoside diphosphate kinase A; ATP-binding, nucl	1e-24
3bbb_A	151	Nucleoside diphosphate kinase B; transcription fac	2e-74
3bbb_A	151	Nucleoside diphosphate kinase B; transcription fac	7e-25
1zs6_A	169	Nucleoside diphosphate kinase 3; nucleotide metabo	3e-74
1zs6_A	169	Nucleoside diphosphate kinase 3; nucleotide metabo	4e-25
3b54_A	161	NDK, NDP kinase, nucleoside diphosphate kinase; al	4e-74
3b54_A	161	NDK, NDP kinase, nucleoside diphosphate kinase; al	1e-24
3js9_A	156	Nucleoside diphosphate kinase family protein; niai	5e-74
3js9_A	156	Nucleoside diphosphate kinase family protein; niai	2e-24
1xiq_A	157	Nucleoside diphosphate kinase B; protein structure	8e-74
1xiq_A	157	Nucleoside diphosphate kinase B; protein structure	1e-24
2az3_A	164	Nucleoside diphosphate kinase; halophilic, transfe	1e-73
2az3_A	164	Nucleoside diphosphate kinase; halophilic, transfe	1e-24
3r9l_A	155	Nucleoside diphosphate kinase; structural genomics	1e-73
3r9l_A	155	Nucleoside diphosphate kinase; structural genomics	3e-24
1s57_A	153	Nucleoside diphosphate kinase II; transferase; HET	2e-73
1s57_A	153	Nucleoside diphosphate kinase II; transferase; HET	2e-24
3q8u_A	157	Nucleoside diphosphate kinase; ferridoxin fold, al	2e-73
3q8u_A	157	Nucleoside diphosphate kinase; ferridoxin fold, al	3e-24
3fkb_A	155	NDP kinase, NDK, nucleoside diphosphate kinase, cy	2e-73
3fkb_A	155	NDP kinase, NDK, nucleoside diphosphate kinase, cy	2e-24
1w7w_A	182	Nucleoside diphosphate kinase; NDPK3, transferase;	2e-73
1w7w_A	182	Nucleoside diphosphate kinase; NDPK3, transferase;	2e-24
1nb2_A	150	Nucleoside diphosphate kinase; bacillus halodenitr	3e-73
1nb2_A	150	Nucleoside diphosphate kinase; bacillus halodenitr	3e-24
2vu5_A	148	Nucleoside diphosphate kinase; nucleotide-binding,	3e-73
2vu5_A	148	Nucleoside diphosphate kinase; nucleotide-binding,	4e-24
1pku_A	150	Nucleoside diphosphate kinase I; RICE, transferase	3e-73
1pku_A	150	Nucleoside diphosphate kinase I; RICE, transferase	5e-24
1ehw_A	162	NDPK H4, nucleoside diphosphate kinase; NM23, mito	5e-73
1ehw_A	162	NDPK H4, nucleoside diphosphate kinase; NM23, mito	2e-24
1u8w_A	149	Nucleoside diphosphate kinase I; nucleotide diphos	5e-73
1u8w_A	149	Nucleoside diphosphate kinase I; nucleotide diphos	5e-24
4fkx_A	161	NDK B, nucleoside diphosphate kinase; structural g	8e-73
4fkx_A	161	NDK B, nucleoside diphosphate kinase; structural g	5e-24
3mpd_A	151	Nucleoside diphosphate kinase; ssgcid, NIH, niaid,	2e-72
3mpd_A	151	Nucleoside diphosphate kinase; ssgcid, NIH, niaid,	4e-24
1wkj_A	137	Nucleoside diphosphate kinase; thermus thermophilu	9e-72
1wkj_A	137	Nucleoside diphosphate kinase; thermus thermophilu	1e-23
2dxe_A	160	Nucleoside diphosphate kinase; nucleoside binding,	2e-71
2dxe_A	160	Nucleoside diphosphate kinase; nucleoside binding,	1e-23
1nhk_R	144	Nucleoside diphosphate kinase; phosphotransferase;	5e-71
1nhk_R	144	Nucleoside diphosphate kinase; phosphotransferase;	2e-23
2hur_A	142	NDK, nucleoside diphosphate kinase, NDP kinase; ty	6e-71
2hur_A	142	NDK, nucleoside diphosphate kinase, NDP kinase; ty	3e-23
3evo_A	146	NDP kinase, NDK, nucleoside diphosphate kinase; ph	2e-70
3evo_A	146	NDP kinase, NDK, nucleoside diphosphate kinase; ph	2e-22
1k44_A	136	Nucleoside diphosphate kinase; nucleoside triphosp	3e-70
1k44_A	136	Nucleoside diphosphate kinase; nucleoside triphosp	1e-23
4dz6_A	190	Nucleoside diphosphate kinase; ssgcid, niaid, vana	3e-69
4dz6_A	190	Nucleoside diphosphate kinase; ssgcid, niaid, vana	1e-23
4ek2_A	145	Nucleoside diphosphate kinase; seattle structural	3e-69
4ek2_A	145	Nucleoside diphosphate kinase; seattle structural	9e-23
3ztp_A	142	Nucleoside diphosphate kinase; transferase; HET: G	8e-68
3ztp_A	142	Nucleoside diphosphate kinase; transferase; HET: G	1e-22
1xqi_A	195	Nucleoside diphosphate kinase; alpha/beta sandwich	1e-60
1xqi_A	195	Nucleoside diphosphate kinase; alpha/beta sandwich	9e-23

>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens} Length = 172

 Score =  220 bits (563), Expect = 2e-74
 Identities = 76/108 (70%), Positives = 90/108 (83%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA + LL+ HY  LKD+PFF 
Sbjct: 23  NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFA 82

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
            L+KYM SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+
Sbjct: 83  GLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 130

>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens} Length = 172

 Score = 93.5 bits (233), Expect = 1e-24
 Identities = 30/43 (69%), Positives = 39/43 (90%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+ +KF+QA +
Sbjct: 23  NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE 65

>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A* Length = 151

 Score =  219 bits (561), Expect = 2e-74
 Identities = 76/108 (70%), Positives = 92/108 (85%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A ++ L+ HY  LKD+PFF 
Sbjct: 2   NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
            L+KYM+SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+
Sbjct: 62  GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 109

>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A* Length = 151

 Score = 93.4 bits (233), Expect = 7e-25
 Identities = 31/43 (72%), Positives = 40/43 (93%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 2   NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 44

>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1 Length = 169

 Score =  219 bits (561), Expect = 3e-74
 Identities = 72/124 (58%), Positives = 96/124 (77%)

Query: 6   LVCFLLQCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDK 65
           LV  +      A  +   ERTF+ +KPDGVQR LVG+IV+RFE KGFKL+A+K VQA ++
Sbjct: 4   LVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEE 63

Query: 66  LLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRG 125
           LLR HYA L+++PF+  L+KYM+SGPVV MVW+GL+V++  R+++GATNPAD  PGTIRG
Sbjct: 64  LLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRG 123

Query: 126 DLCL 129
           D C+
Sbjct: 124 DFCI 127

>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1 Length = 169

 Score = 94.6 bits (236), Expect = 4e-25
 Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 130 LVCCLL---QCALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQA 186
           ++C +L        A  +   ERTF+ +KPDGVQR LVG+IV+RFE KGFKL+A+K VQA
Sbjct: 1   MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQA 60

Query: 187 DD 188
            +
Sbjct: 61  SE 62

>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae} Length = 161

 Score =  218 bits (559), Expect = 4e-74
 Identities = 63/108 (58%), Positives = 82/108 (75%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             ERTFI +KPDGVQRGLV +I+ RFE+KG+KL+A+K V+ADDKLL  HYA    KPFF 
Sbjct: 12  QTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFP 71

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
            ++ +M SGP++  VWEG +V++ GR++LGATNP    PGTIRGD  +
Sbjct: 72  KMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGI 119

>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae} Length = 161

 Score = 93.0 bits (232), Expect = 1e-24
 Identities = 29/43 (67%), Positives = 37/43 (86%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
             ERTFI +KPDGVQRGLV +I+ RFE+KG+KL+A+K V+ADD
Sbjct: 12  QTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADD 54

>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} Length = 156

 Score =  218 bits (559), Expect = 5e-74
 Identities = 57/108 (52%), Positives = 77/108 (71%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           + ERT+IM+KPDGVQRGL+G+I++RFE KG KLIA KF      ++  HY   KDKPFF+
Sbjct: 8   HMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFK 67

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
            L  ++S GPV  M+WEG   IK+GR+++G T+P +   GTIRGD  +
Sbjct: 68  DLCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGV 115

>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} Length = 156

 Score = 92.6 bits (231), Expect = 2e-24
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           + ERT+IM+KPDGVQRGL+G+I++RFE KG KLIA KF     
Sbjct: 8   HMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTM 50

>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1 Length = 157

 Score =  218 bits (557), Expect = 8e-74
 Identities = 62/110 (56%), Positives = 86/110 (78%)

Query: 20  SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPF 79
             + E++FIMIKPDGVQRGLVG I++RFE+KG+KLIA+K +   +++L+ HY  L D+PF
Sbjct: 6   HHHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPF 65

Query: 80  FESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           F++L+ Y+S GPVV MVWEG++++K GR ++G TNP     GTIRGD CL
Sbjct: 66  FKNLVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCL 115

>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1 Length = 157

 Score = 93.0 bits (232), Expect = 1e-24
 Identities = 27/45 (60%), Positives = 37/45 (82%)

Query: 144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
             + E++FIMIKPDGVQRGLVG I++RFE+KG+KLIA+K +   +
Sbjct: 6   HHHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTE 50

>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A Length = 164

 Score =  218 bits (557), Expect = 1e-73
 Identities = 56/108 (51%), Positives = 77/108 (71%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           + ERTF+M+KPDGVQRGL+G IV R E KG K++  KF++ D++L   HYA  +DKPFF+
Sbjct: 7   HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFD 66

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
            L+ +++SGPV  MVWEG +  +  R ++GAT+  D  PGTIRGD   
Sbjct: 67  GLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGN 114

>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A Length = 164

 Score = 93.1 bits (232), Expect = 1e-24
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           + ERTF+M+KPDGVQRGL+G IV R E KG K++  KF++ D+
Sbjct: 7   HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDE 49

>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} Length = 155

 Score =  217 bits (555), Expect = 1e-73
 Identities = 62/111 (55%), Positives = 79/111 (71%)

Query: 19  ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKP 78
            S  +ERTF+M+KPDGVQRGLVG+I+ RFE +GFKL+AMKF      L+  HY     +P
Sbjct: 3   GSMARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARP 62

Query: 79  FFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           FF  L K++SSGPV  MVWEG NV+ + R+M+G T PA+  PGTIRGD  +
Sbjct: 63  FFAGLCKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESAPGTIRGDFGI 113

>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} Length = 155

 Score = 91.9 bits (229), Expect = 3e-24
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 143 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
            S  +ERTF+M+KPDGVQRGLVG+I+ RFE +GFKL+AMKF     
Sbjct: 3   GSMARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSK 48

>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A* Length = 153

 Score =  217 bits (555), Expect = 2e-73
 Identities = 58/108 (53%), Positives = 77/108 (71%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           + E T+IM+KPDG+QRGLVG+I+ RFE+KGFKLI +K  Q   +L   HY  L  K FF 
Sbjct: 4   DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFP 63

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           +LI+Y++SGPVV M WEG+ V+   R ++G T+P    PGTIRGDL +
Sbjct: 64  NLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAV 111

>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A* Length = 153

 Score = 92.2 bits (230), Expect = 2e-24
 Identities = 26/43 (60%), Positives = 34/43 (79%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           + E T+IM+KPDG+QRGLVG+I+ RFE+KGFKLI +K  Q   
Sbjct: 4   DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPK 46

>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A* Length = 157

 Score =  217 bits (555), Expect = 2e-73
 Identities = 52/106 (49%), Positives = 73/106 (68%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTF+MIKPD VQR L+G+++ R E KG KL+  K +Q   +L  THY   + KPF+  L
Sbjct: 2   ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDL 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           I +++S PV  MV EG + + V R ++G+TNP++  PG+IRGDL L
Sbjct: 62  ISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGL 107

>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A* Length = 157

 Score = 91.9 bits (229), Expect = 3e-24
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           ERTF+MIKPD VQR L+G+++ R E KG KL+  K +Q   
Sbjct: 2   ERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPM 42

>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ... Length = 155

 Score =  217 bits (554), Expect = 2e-73
 Identities = 55/108 (50%), Positives = 76/108 (70%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K++PFF 
Sbjct: 7   NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFG 66

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
            L+ +++SGPVV MV+EG  V+   R M+G TNP    PG+IRGD  +
Sbjct: 67  GLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGV 114

>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ... Length = 155

 Score = 92.6 bits (231), Expect = 2e-24
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +    
Sbjct: 7   NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTK 49

>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1 Length = 182

 Score =  217 bits (556), Expect = 2e-73
 Identities = 59/108 (54%), Positives = 76/108 (70%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+ +K +    +  + HY  LK++PFF 
Sbjct: 31  ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFN 90

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
            L  ++SSGPV+ MVWEG  VI  GR ++GAT+P    PGTIRGDL +
Sbjct: 91  GLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAV 138

>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1 Length = 182

 Score = 93.1 bits (232), Expect = 2e-24
 Identities = 25/43 (58%), Positives = 31/43 (72%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
             ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+ +K +    
Sbjct: 31  ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTK 73

>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1 Length = 150

 Score =  216 bits (553), Expect = 3e-73
 Identities = 59/107 (55%), Positives = 70/107 (65%)

Query: 23  KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFES 82
           KERTF+M+KPDGVQR LVG++V+RFE KG KL   K +         HYA L   PFF  
Sbjct: 2   KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 61

Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           L+   +SGPV  MVWEGLN     R +LGATNP+D  PGTIRGD  +
Sbjct: 62  LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGV 108

>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1 Length = 150

 Score = 91.8 bits (229), Expect = 3e-24
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 147 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           KERTF+M+KPDGVQR LVG++V+RFE KG KL   K +    
Sbjct: 2   KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISK 43

>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis} Length = 148

 Score =  216 bits (553), Expect = 3e-73
 Identities = 52/106 (49%), Positives = 75/106 (70%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E+TF+M+KPDGVQR  +G+IV RFE+KGF+L+  K +Q   ++   HYA  ++KPFF  L
Sbjct: 2   EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGEL 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           + +++SGPV  MVW+G  V+   R+M+G T P +  PGTIRGD  +
Sbjct: 62  VDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGV 107

>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis} Length = 148

 Score = 91.4 bits (228), Expect = 4e-24
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           E+TF+M+KPDGVQR  +G+IV RFE+KGF+L+  K +Q   
Sbjct: 2   EKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTP 42

>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1 Length = 150

 Score =  216 bits (553), Expect = 3e-73
 Identities = 60/106 (56%), Positives = 77/106 (72%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E++FIMIKPDGVQRGL+G I+ RFE+KGF L  MKF+  +    + HYA L DKPFF  L
Sbjct: 3   EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 62

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           ++Y+ SGPVV MVWEG +V+  GR ++GAT P +  PGTIR D  +
Sbjct: 63  VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAV 108

>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1 Length = 150

 Score = 91.5 bits (228), Expect = 5e-24
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           E++FIMIKPDGVQRGL+G I+ RFE+KGF L  MKF+  + 
Sbjct: 3   EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVER 43

>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1 Length = 162

 Score =  216 bits (553), Expect = 5e-73
 Identities = 60/108 (55%), Positives = 81/108 (75%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
            +ERT + +KPDGVQR LVG ++QRFE +GF L+ MK +QA + +L  HY  L+ KPF+ 
Sbjct: 23  TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYP 82

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           +LI+YMSSGPVV MVWEG NV++  R+M+G T+ A+  PGTIRGD  +
Sbjct: 83  ALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSV 130

>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1 Length = 162

 Score = 92.7 bits (231), Expect = 2e-24
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
            +ERT + +KPDGVQR LVG ++QRFE +GF L+ MK +QA +
Sbjct: 23  TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPE 65

>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1 Length = 149

 Score =  215 bits (551), Expect = 5e-73
 Identities = 58/106 (54%), Positives = 74/106 (69%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E+TFIMIKPDGVQRGL+G+++ RFE+KGF L  +K +  +      HY  L  K FF  L
Sbjct: 2   EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           + Y+ SGPVV M+WEG NV+  GR ++GATNPA   PGTIRGD  +
Sbjct: 62  VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAI 107

>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1 Length = 149

 Score = 91.1 bits (227), Expect = 5e-24
 Identities = 24/41 (58%), Positives = 33/41 (80%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           E+TFIMIKPDGVQRGL+G+++ RFE+KGF L  +K +  + 
Sbjct: 2   EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVER 42

>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A* Length = 161

 Score =  215 bits (551), Expect = 8e-73
 Identities = 63/106 (59%), Positives = 81/106 (76%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTFI +KPDGVQR LVG+I++RFE KG+KL+ +K +Q  ++  + HY  L  KPF+  L
Sbjct: 12  ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 71

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           + Y SSGP+V MVWEGL V+K GR +LGATNPAD +PGTIRGD  +
Sbjct: 72  VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAV 117

>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A* Length = 161

 Score = 91.5 bits (228), Expect = 5e-24
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           ERTFI +KPDGVQR LVG+I++RFE KG+KL+ +K +Q  +
Sbjct: 12  ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTE 52

>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} Length = 151

 Score =  214 bits (548), Expect = 2e-72
 Identities = 52/108 (48%), Positives = 71/108 (65%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           + ERTFIMIKPD ++R L+ +I+QRFEEKG  L A K V    ++L THY+ L   PFF 
Sbjct: 4   SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFS 63

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
            +++ M SG V+ MVW G + + +GR ++G TNP     GTIRGD  +
Sbjct: 64  EMVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGV 111

>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} Length = 151

 Score = 91.4 bits (228), Expect = 4e-24
 Identities = 24/43 (55%), Positives = 30/43 (69%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           + ERTFIMIKPD ++R L+ +I+QRFEEKG  L A K V    
Sbjct: 4   SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKR 46

>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A* Length = 137

 Score =  212 bits (542), Expect = 9e-72
 Identities = 59/106 (55%), Positives = 79/106 (74%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTF+MIKPDGV+RGLVG+I+ RFE KGF++ A+K +Q   +L   HYA  ++KPFF  L
Sbjct: 2   ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGL 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           +++++SGPVV MV EG  V+   R M+GAT+P D +PGTIRGD   
Sbjct: 62  VRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFAT 107

>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A* Length = 137

 Score = 89.9 bits (224), Expect = 1e-23
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           ERTF+MIKPDGV+RGLVG+I+ RFE KGF++ A+K +Q   
Sbjct: 2   ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQ 42

>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A* Length = 160

 Score =  212 bits (541), Expect = 2e-71
 Identities = 55/108 (50%), Positives = 74/108 (68%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             ERT ++IKPD V RGL+G+I+ RFE+KG K++ MK +  D +L   HY   ++KPFF+
Sbjct: 6   ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFK 65

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           +LI Y++  PVV MV EG   ++V R M GAT+P D  PGTIRGD  L
Sbjct: 66  ALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGL 113

>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A* Length = 160

 Score = 90.7 bits (226), Expect = 1e-23
 Identities = 22/43 (51%), Positives = 31/43 (72%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
             ERT ++IKPD V RGL+G+I+ RFE+KG K++ MK +  D 
Sbjct: 6   ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDR 48

>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A Length = 144

 Score =  210 bits (538), Expect = 5e-71
 Identities = 50/106 (47%), Positives = 68/106 (64%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT  +IKPDG+++G++GKI+ RFEEKG K +A++            YA  K +PFF+ L
Sbjct: 3   ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           +++M SGPVV MV EG N +   R ++GATNPA    GTIR D   
Sbjct: 63  VQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFAT 108

>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A Length = 144

 Score = 89.5 bits (223), Expect = 2e-23
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ERT  +IKPDG+++G++GKI+ RFEEKG K +A++     
Sbjct: 3   ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLS 42

>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli} Length = 142

 Score =  210 bits (537), Expect = 6e-71
 Identities = 46/106 (43%), Positives = 67/106 (63%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTF +IKP+ V + ++G I  RFE  GFK++  K +    +  R  YA    KPFF+ L
Sbjct: 3   ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGL 62

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           +++M+SGP+V  V EG N ++  R +LGATNPA+ + GT+R D   
Sbjct: 63  VEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYAD 108

>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli} Length = 142

 Score = 89.1 bits (222), Expect = 3e-23
 Identities = 17/40 (42%), Positives = 25/40 (62%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ERTF +IKP+ V + ++G I  RFE  GFK++  K +   
Sbjct: 3   ERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLT 42

>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ... Length = 146

 Score =  209 bits (535), Expect = 2e-70
 Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKF-VQADDKLLRTHYAALKDKPFF 80
             +RT ++IKPD  +R LV +I+ R E+K FK+++MKF  +A   L+  HY    ++ +F
Sbjct: 5   GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYF 64

Query: 81  ESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
                +M SGP++ +V+EG + I   R + G TNP    PGTIRGDL  
Sbjct: 65  NDNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLAN 113

>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ... Length = 146

 Score = 86.8 bits (216), Expect = 2e-22
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFV 184
             +RT ++IKPD  +R LV +I+ R E+K FK+++MKF 
Sbjct: 5   GLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFW 43

>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1 Length = 136

 Score =  208 bits (532), Expect = 3e-70
 Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 1/107 (0%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT ++IKPDG++R L+G+I+ R E KG  + A++      +L   HYA  + KPFF SL
Sbjct: 3   ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADC-IPGTIRGDLCL 129
           +++++SGPVV  + EG   I   R + G T+P     PGTIRGD  L
Sbjct: 63  LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFAL 109

>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1 Length = 136

 Score = 89.9 bits (224), Expect = 1e-23
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           ERT ++IKPDG++R L+G+I+ R E KG  + A++      
Sbjct: 3   ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSA 43

>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A* Length = 190

 Score =  208 bits (530), Expect = 3e-69
 Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 5/118 (4%)

Query: 17  ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYA---- 72
            + S   ++T  ++KPDGV+RGL+G +V RFE  G K++A K +  D+ L + HY     
Sbjct: 20  GSMSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDI 79

Query: 73  -ALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
                +  + SLIK++S+ PV   V EG+  I+V R + GAT P   IPGTIRGD   
Sbjct: 80  VFRHSEAVWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSY 137

>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A* Length = 190

 Score = 91.7 bits (228), Expect = 1e-23
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 141 ATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
            + S   ++T  ++KPDGV+RGL+G +V RFE  G K++A K +  D+
Sbjct: 20  GSMSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDE 67

>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center for infectious disease, S DAMP, niaid; HET: DA; 2.00A {Burkholderia thailandensis} PDB: 4dut_A* Length = 145

 Score =  206 bits (526), Expect = 3e-69
 Identities = 41/106 (38%), Positives = 60/106 (56%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT  +IKPD V + ++G+I  RFE  G K++A +            YA   ++PFF+ L
Sbjct: 8   ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDL 67

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
           +++M SGPV+  V EG + I   R ++GAT+P     GTIR D   
Sbjct: 68  VEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKGTIRADFAD 113

>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center for infectious disease, S DAMP, niaid; HET: DA; 2.00A {Burkholderia thailandensis} PDB: 4dut_A* Length = 145

 Score = 88.0 bits (219), Expect = 9e-23
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ERT  +IKPD V + ++G+I  RFE  G K++A +     
Sbjct: 8   ERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLS 47

>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A Length = 142

 Score =  202 bits (516), Expect = 8e-68
 Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 3/109 (2%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT I++KPD +++G +GKI+ RF ++GF++ A+K  +   +     Y   +++PFF+ L
Sbjct: 4   ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQEL 63

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPAD---CIPGTIRGDLCL 129
           +++MSSGPVV  V EG + IK  R ++G T+  +     P +IR     
Sbjct: 64  VEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGT 112

>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A Length = 142

 Score = 87.6 bits (218), Expect = 1e-22
 Identities = 17/40 (42%), Positives = 30/40 (75%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ERT I++KPD +++G +GKI+ RF ++GF++ A+K  +  
Sbjct: 4   ERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFT 43

>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1 Length = 195

 Score =  186 bits (473), Expect = 1e-60
 Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 33/141 (23%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD----- 76
             E+T +++KPD V RGLV +I+ RF++ G K++A+K V+A  + +   Y + ++     
Sbjct: 14  PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSA 73

Query: 77  ----------------------------KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRS 108
                                       +    +L+KYM+SGP V MV +G   +++ R 
Sbjct: 74  GQKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRK 133

Query: 109 MLGATNPADCIPGTIRGDLCL 129
           ++G T+P    PGTIRGD  +
Sbjct: 134 LVGPTSPHSAPPGTIRGDYSI 154

>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1 Length = 195

 Score = 89.2 bits (221), Expect = 9e-23
 Identities = 19/43 (44%), Positives = 31/43 (72%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
             E+T +++KPD V RGLV +I+ RF++ G K++A+K V+A  
Sbjct: 14  PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASP 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
4hr2_A	145	Nucleoside diphosphate kinase; ssgcid, seattle str	100.0
3evo_A	146	NDP kinase, NDK, nucleoside diphosphate kinase; ph	100.0
3mpd_A	151	Nucleoside diphosphate kinase; ssgcid, NIH, niaid,	100.0
4fkx_A	161	NDK B, nucleoside diphosphate kinase; structural g	100.0
3q8u_A	157	Nucleoside diphosphate kinase; ferridoxin fold, al	100.0
1wkj_A	137	Nucleoside diphosphate kinase; thermus thermophilu	100.0
1k44_A	136	Nucleoside diphosphate kinase; nucleoside triphosp	100.0
3fkb_A	155	NDP kinase, NDK, nucleoside diphosphate kinase, cy	100.0
3l7u_A	172	Nucleoside diphosphate kinase A; ATP-binding, nucl	100.0
3ztp_A	142	Nucleoside diphosphate kinase; transferase; HET: G	100.0
2hur_A	142	NDK, nucleoside diphosphate kinase, NDP kinase; ty	100.0
3r9l_A	155	Nucleoside diphosphate kinase; structural genomics	100.0
1nhk_R	144	Nucleoside diphosphate kinase; phosphotransferase;	100.0
1xiq_A	157	Nucleoside diphosphate kinase B; protein structure	100.0
2vu5_A	148	Nucleoside diphosphate kinase; nucleotide-binding,	100.0
3b54_A	161	NDK, NDP kinase, nucleoside diphosphate kinase; al	100.0
1pku_A	150	Nucleoside diphosphate kinase I; RICE, transferase	100.0
1s57_A	153	Nucleoside diphosphate kinase II; transferase; HET	100.0
1u8w_A	149	Nucleoside diphosphate kinase I; nucleotide diphos	100.0
2az3_A	164	Nucleoside diphosphate kinase; halophilic, transfe	100.0
3bbb_A	151	Nucleoside diphosphate kinase B; transcription fac	100.0
1ehw_A	162	NDPK H4, nucleoside diphosphate kinase; NM23, mito	100.0
3js9_A	156	Nucleoside diphosphate kinase family protein; niai	100.0
1zs6_A	169	Nucleoside diphosphate kinase 3; nucleotide metabo	100.0
1nb2_A	150	Nucleoside diphosphate kinase; bacillus halodenitr	100.0
1w7w_A	182	Nucleoside diphosphate kinase; NDPK3, transferase;	100.0
2dxe_A	160	Nucleoside diphosphate kinase; nucleoside binding,	100.0
4dz6_A	190	Nucleoside diphosphate kinase; ssgcid, niaid, vana	100.0
1xqi_A	195	Nucleoside diphosphate kinase; alpha/beta sandwich	100.0
3bh7_B	352	Protein XRP2; protein-protein complex, GTPase acti	99.92
1w7w_A	182	Nucleoside diphosphate kinase; NDPK3, transferase;	99.1
3b54_A	161	NDK, NDP kinase, nucleoside diphosphate kinase; al	99.04
3l7u_A	172	Nucleoside diphosphate kinase A; ATP-binding, nucl	99.02
4dz6_A	190	Nucleoside diphosphate kinase; ssgcid, niaid, vana	99.01
1ehw_A	162	NDPK H4, nucleoside diphosphate kinase; NM23, mito	99.0
1zs6_A	169	Nucleoside diphosphate kinase 3; nucleotide metabo	98.97
3bh7_B	352	Protein XRP2; protein-protein complex, GTPase acti	98.56
2z14_A	133	EF-hand domain-containing family member C2; DUF112	88.16

>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*

Probab=100.00  E-value=6e-44  Score=273.42  Aligned_cols=121  Identities=35%  Similarity=0.577  Sum_probs=116.4

Q ss_pred             CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeC
Q psy6076          21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGL  100 (188)
Q Consensus        21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~  100 (188)
                      +..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+
T Consensus         5 m~~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~   84 (145)
T 4hr2_A            5 MALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGE   84 (145)
T ss_dssp             CCEEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEE
T ss_pred             chHHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         101 NVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       101 naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |||+.||+++|||||..|+|+|||++||.+..+|+.|..++
T Consensus        85 ~aV~~~R~l~G~tdp~~A~pgtIR~~fg~~~~~N~vHgSDs  125 (145)
T 4hr2_A           85 DAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDA  125 (145)
T ss_dssp             THHHHHHHHHCCSSTTTSCTTSHHHHHCSBTTBCSEEECCS
T ss_pred             CcHhHHhhccCCCCcccCCCCCcHHHhcCCcCccceECCCC
Confidence            99999999999999999999999999999999997665554

>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...

Probab=100.00  E-value=1.3e-42  Score=266.59  Aligned_cols=121  Identities=37%  Similarity=0.647  Sum_probs=114.2

Q ss_pred             CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeec-CHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEee
Q psy6076          21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQA-DDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEG   99 (188)
Q Consensus        21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~l-s~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g   99 (188)
                      ...|+||+|||||+++++++|+||++|+++||.|+++||++| |+++|++||.+|+++|||++|++||+|||++||+|+|
T Consensus         4 ~~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg   83 (146)
T 3evo_A            4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEG   83 (146)
T ss_dssp             --CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEE
T ss_pred             CcceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeC
Confidence            457999999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         100 LNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       100 ~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      +|||+.||+++|||||..|+|+|||++||.+..+|+.|..++
T Consensus        84 ~naV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs  125 (146)
T 3evo_A           84 TDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS  125 (146)
T ss_dssp             TTHHHHHHHHHCCSSTTTCCTTSHHHHHCCSSSCCSEEECCS
T ss_pred             CCHHHHHHHHcCCCCcccCCCCChHHHhCCCccceeEEeCCC
Confidence            999999999999999999999999999999998886555443

>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0

Probab=100.00  E-value=1.6e-42  Score=267.34  Aligned_cols=120  Identities=43%  Similarity=0.725  Sum_probs=114.2

Q ss_pred             CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076          22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN  101 (188)
Q Consensus        22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n  101 (188)
                      ..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+|
T Consensus         4 ~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~n   83 (151)
T 3mpd_A            4 SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKD   83 (151)
T ss_dssp             -CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred             ceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCCc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      ||+.||+++|||||..|+|+|||++||.+..+|..|..++
T Consensus        84 aV~~~R~l~G~t~p~~a~PgtiR~~fg~~~~~N~vHgSDs  123 (151)
T 3mpd_A           84 AVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDC  123 (151)
T ss_dssp             HHHHHHHHHCCSSTTTSCTTSHHHHHCCSSTTCSEEECSS
T ss_pred             HHHHHHHHhCCCChhhcCCCChhHHhCCCccceeEEeCCC
Confidence            9999999999999999999999999999998986555443

>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*

Probab=100.00  E-value=1.7e-42  Score=269.26  Aligned_cols=122  Identities=52%  Similarity=0.917  Sum_probs=115.2

Q ss_pred             cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076          19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE   98 (188)
Q Consensus        19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~   98 (188)
                      ..+..|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+
T Consensus         7 ~~~~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvle   86 (161)
T 4fkx_A            7 HHMPSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWE   86 (161)
T ss_dssp             --CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred             cCCCcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEe
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076          99 GLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus        99 g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |+|||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus        87 g~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~vHgSD  128 (161)
T 4fkx_A           87 GLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSD  128 (161)
T ss_dssp             STTHHHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECS
T ss_pred             ccChHHHHHHHhcCCChhhcCCCChhHhhCCCccceeEEeCC
Confidence            999999999999999999999999999999999888654444

>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*

Probab=100.00  E-value=2.4e-42  Score=267.71  Aligned_cols=118  Identities=45%  Similarity=0.778  Sum_probs=113.1

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      +|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+||
T Consensus         1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na   80 (157)
T 3q8u_A            1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA   80 (157)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred             CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus        81 V~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSD  118 (157)
T 3q8u_A           81 VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSD  118 (157)
T ss_dssp             HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECS
T ss_pred             HHHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCC
Confidence            99999999999999999999999999998888654443

>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*

Probab=100.00  E-value=2.5e-42  Score=262.78  Aligned_cols=119  Identities=50%  Similarity=0.874  Sum_probs=113.9

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus         1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~a   80 (137)
T 1wkj_A            1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV   80 (137)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred             CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |+.||+++|||||..|+|+|||++||.+..+|..|..++
T Consensus        81 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs  119 (137)
T 1wkj_A           81 VAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSAT  119 (137)
T ss_dssp             HHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSS
T ss_pred             HHHHHHHhCCCCCCcCCCCcchHHhCCCcccceEEecCC
Confidence            999999999999999999999999999998986555543

>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1

Probab=100.00  E-value=3.7e-42  Score=261.52  Aligned_cols=119  Identities=40%  Similarity=0.727  Sum_probs=114.3

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus         2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a   81 (136)
T 1k44_A            2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA   81 (136)
T ss_dssp             CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred             ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCC-CCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         103 IKVGRSMLGATNPA-DCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       103 V~~~r~l~Gp~~~~-~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |+.||+++|||||. .|+|+|||++||.+..+|..|..++
T Consensus        82 V~~~R~l~G~t~p~~~A~pgtiR~~fg~~~~~N~vHgSDs  121 (136)
T 1k44_A           82 IAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDS  121 (136)
T ss_dssp             HHHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEECSS
T ss_pred             HHHHHHHhCCCCccccCCCCCcHHHhcCCccceEEEeCCC
Confidence            99999999999999 9999999999999999987665553

>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...

Probab=100.00  E-value=3e-42  Score=266.84  Aligned_cols=120  Identities=47%  Similarity=0.821  Sum_probs=114.7

Q ss_pred             CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeC
Q psy6076          21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGL  100 (188)
Q Consensus        21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~  100 (188)
                      ...|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+
T Consensus         6 ~~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~   85 (155)
T 3fkb_A            6 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGK   85 (155)
T ss_dssp             CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred             cccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         101 NVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       101 naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus        86 naV~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSD  125 (155)
T 3fkb_A           86 GVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSD  125 (155)
T ss_dssp             THHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECS
T ss_pred             CHHHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCC
Confidence            9999999999999999999999999999998888655444

>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.9e-42  Score=269.65  Aligned_cols=122  Identities=63%  Similarity=1.087  Sum_probs=115.9

Q ss_pred             cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076          19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE   98 (188)
Q Consensus        19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~   98 (188)
                      +.+..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+
T Consensus        20 ~~~~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvle   99 (172)
T 3l7u_A           20 HMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWE   99 (172)
T ss_dssp             -CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEE
T ss_pred             hcchhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEe
Confidence            66788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076          99 GLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus        99 g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |+|||+.||+++|||||..|+|+|||++||.+..+|+.|..+
T Consensus       100 g~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~VHgSD  141 (172)
T 3l7u_A          100 GLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD  141 (172)
T ss_dssp             STTHHHHHHHHHCCSSTTTCCTTSHHHHHCCCGGGCCEEECS
T ss_pred             CCCHHHHHHHHcCCCChhhcCCCChhHHhcCCCCCcEEEeCC
Confidence            999999999999999999999999999999999998654443

>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A

Probab=100.00  E-value=1.4e-42  Score=265.51  Aligned_cols=120  Identities=34%  Similarity=0.598  Sum_probs=114.5

Q ss_pred             CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076          22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN  101 (188)
Q Consensus        22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n  101 (188)
                      ..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|
T Consensus         2 ~~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~n   81 (142)
T 3ztp_A            2 AVERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGED   81 (142)
T ss_dssp             CEEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred             ccceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCCCC---CCCCcccchhhhhhhhhhhhhhc
Q psy6076         102 VIKVGRSMLGATNPADC---IPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       102 aV~~~r~l~Gp~~~~~a---~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      ||+.||+++|||||..|   +|+|||++||.+..+|..|..++
T Consensus        82 aV~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs  124 (142)
T 3ztp_A           82 AIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDS  124 (142)
T ss_dssp             HHHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCS
T ss_pred             HHHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCC
Confidence            99999999999999999   99999999999999986555543

>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}

Probab=100.00  E-value=6.2e-42  Score=261.94  Aligned_cols=119  Identities=39%  Similarity=0.661  Sum_probs=113.9

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus         2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a   81 (142)
T 2hur_A            2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA   81 (142)
T ss_dssp             EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred             ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |+.||+++|||||..|+|+|||++||.+..+|..|..++
T Consensus        82 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs  120 (142)
T 2hur_A           82 VQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDS  120 (142)
T ss_dssp             HHHHHHHHCCSSTTTSCTTSHHHHHCSSSTTCSEEECSS
T ss_pred             HHHHHHHhCCCCcccCCCCcchHHhCCCcccceEEeCCC
Confidence            999999999999999999999999999999986555443

>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1

Probab=100.00  E-value=2.4e-42  Score=267.33  Aligned_cols=120  Identities=52%  Similarity=0.931  Sum_probs=87.8

Q ss_pred             CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeC
Q psy6076          21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGL  100 (188)
Q Consensus        21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~  100 (188)
                      +..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+
T Consensus         5 m~~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~   84 (155)
T 3r9l_A            5 MARERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGA   84 (155)
T ss_dssp             CCSCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEEST
T ss_pred             cchheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCC
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         101 NVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       101 naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus        85 naV~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSD  124 (155)
T 3r9l_A           85 NVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSA  124 (155)
T ss_dssp             THHHHHHHHHCCSCTTTCCTTSHHHHHCCSSTTCCEEECS
T ss_pred             CHHHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCC
Confidence            9999999999999999999999999999999888655444

>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A

Probab=100.00  E-value=6.8e-42  Score=262.20  Aligned_cols=118  Identities=42%  Similarity=0.703  Sum_probs=113.3

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus         2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a   81 (144)
T 1nhk_R            2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA   81 (144)
T ss_dssp             EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred             ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus        82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSD  119 (144)
T 1nhk_R           82 VLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSD  119 (144)
T ss_dssp             HHHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEECS
T ss_pred             HHHHHHHhCCCCCCcCCCCcchHHhCCCCcceeEEeCC
Confidence            99999999999999999999999999998888655444

>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1

Probab=100.00  E-value=9.9e-42  Score=264.40  Aligned_cols=121  Identities=52%  Similarity=0.980  Sum_probs=113.8

Q ss_pred             CCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEee
Q psy6076          20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEG   99 (188)
Q Consensus        20 ~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g   99 (188)
                      ...+|+||+|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|
T Consensus         6 ~~~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg   85 (157)
T 1xiq_A            6 HHHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEG   85 (157)
T ss_dssp             ---CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEES
T ss_pred             cchhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEec
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         100 LNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       100 ~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      +|||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus        86 ~naV~~~R~l~G~T~p~~A~pgtIR~~fg~~~~~N~vHgSD  126 (157)
T 1xiq_A           86 VDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSD  126 (157)
T ss_dssp             TTHHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECS
T ss_pred             ccchHHHHHHcCCCCCCcCCCCChHHHhCCCCCceeEEeCC
Confidence            99999999999999999999999999999999888655444

>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}

Probab=100.00  E-value=7e-42  Score=263.33  Aligned_cols=118  Identities=45%  Similarity=0.865  Sum_probs=113.2

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      +|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus         1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a   80 (148)
T 2vu5_A            1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGV   80 (148)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTH
T ss_pred             CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus        81 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSD  118 (148)
T 2vu5_A           81 VDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSD  118 (148)
T ss_dssp             HHHHHHHHCCSSTTTSCTTSHHHHHCCCSTTCSEEECS
T ss_pred             HHHHHHHhCCCCccccCCCChHHHhcCCcccceEEeCC
Confidence            99999999999999999999999999998888655444

>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-42  Score=267.36  Aligned_cols=123  Identities=52%  Similarity=0.907  Sum_probs=109.5

Q ss_pred             ccCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEE
Q psy6076          18 TASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVW   97 (188)
Q Consensus        18 ~~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l   97 (188)
                      ++++..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|
T Consensus         8 ~~~~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvl   87 (161)
T 3b54_A            8 HMSSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVW   87 (161)
T ss_dssp             --CCCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEE
T ss_pred             ccccccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEE
Confidence            38889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076          98 EGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus        98 ~g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      +|+|||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus        88 eg~naV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSD  130 (161)
T 3b54_A           88 EGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSD  130 (161)
T ss_dssp             ESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECS
T ss_pred             eccChHHHHHHHhCCCCcccCCCCChHHHhcCCCCCceEEeCC
Confidence            9999999999999999999999999999999998888654443

>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1

Probab=100.00  E-value=1e-41  Score=262.80  Aligned_cols=119  Identities=51%  Similarity=0.909  Sum_probs=114.2

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      +|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus         2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a   81 (150)
T 1pku_A            2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDV   81 (150)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred             ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccch
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |+.||+++|||||..|+|+|||++||.+..+|..|..++
T Consensus        82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs  120 (150)
T 1pku_A           82 VATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDS  120 (150)
T ss_dssp             HHHHHHHHCCSSGGGSCTTSHHHHHCSBTTBCSEEECSS
T ss_pred             HHHHHHHhCCCCcccCCCCChHHHhCCCccceeEEeCCC
Confidence            999999999999999999999999999999986555543

>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*

Probab=100.00  E-value=1.7e-41  Score=262.41  Aligned_cols=119  Identities=49%  Similarity=0.879  Sum_probs=114.0

Q ss_pred             CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076          22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN  101 (188)
Q Consensus        22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n  101 (188)
                      ..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|
T Consensus         4 ~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~   83 (153)
T 1s57_A            4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVG   83 (153)
T ss_dssp             CCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETT
T ss_pred             ccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEeccc
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      ||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus        84 aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSD  122 (153)
T 1s57_A           84 VVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSD  122 (153)
T ss_dssp             HHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEECS
T ss_pred             HHHHHHHHhCCCCccccCCcchHHHhcCCCcCceEEcCC
Confidence            999999999999999999999999999998888655444

>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1

Probab=100.00  E-value=1.1e-41  Score=262.35  Aligned_cols=119  Identities=49%  Similarity=0.889  Sum_probs=114.0

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      +|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus         1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~a   80 (149)
T 1u8w_A            1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV   80 (149)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred             CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |+.||+++|||||..|+|+|||++||.+..+|..|..++
T Consensus        81 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs  119 (149)
T 1u8w_A           81 VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDS  119 (149)
T ss_dssp             HHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSS
T ss_pred             hHHHHHHhCCCCcccCCCCCcHHHHCCCCcCceEEecCC
Confidence            999999999999999999999999999999986555443

>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A

Probab=100.00  E-value=2.7e-41  Score=263.62  Aligned_cols=125  Identities=46%  Similarity=0.816  Sum_probs=116.3

Q ss_pred             cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076          19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE   98 (188)
Q Consensus        19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~   98 (188)
                      +.+..|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+
T Consensus         4 l~~~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvle   83 (164)
T 2az3_A            4 MTDHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWE   83 (164)
T ss_dssp             ---CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred             ccCccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhccC
Q psy6076          99 GLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATA  143 (188)
Q Consensus        99 g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~~~  143 (188)
                      |+|||+.||+++|||||..|+|+|||++||.+..+|..|..++.+
T Consensus        84 g~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e  128 (164)
T 2az3_A           84 GADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHED  128 (164)
T ss_dssp             STTHHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEECCTTS
T ss_pred             cccHHHHHHHHhCCCCccccCCCcchhhhcccccCceEEecCCcc
Confidence            999999999999999999999999999999999888666555443

>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*

Probab=100.00  E-value=2.1e-41  Score=261.39  Aligned_cols=119  Identities=65%  Similarity=1.113  Sum_probs=113.9

Q ss_pred             CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076          22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN  101 (188)
Q Consensus        22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n  101 (188)
                      ..|+||+|||||+++++++|+||++|+++||+|+++||+++++++|++||.+|+++|||++|++||+|||+++|+|+|+|
T Consensus         2 ~~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~   81 (151)
T 3bbb_A            2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLN   81 (151)
T ss_dssp             TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred             CcceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      ||+.||+++|||||..|.|+|||++||.+..+|..|..+
T Consensus        82 aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSD  120 (151)
T 3bbb_A           82 VVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD  120 (151)
T ss_dssp             HHHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECS
T ss_pred             HHHHHHHHhCCCCcccCCCCCcHHHhcCCcccceEEecC
Confidence            999999999999999999999999999998888655444

>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1

Probab=100.00  E-value=2.2e-41  Score=263.50  Aligned_cols=120  Identities=51%  Similarity=0.942  Sum_probs=114.4

Q ss_pred             CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076          22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN  101 (188)
Q Consensus        22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n  101 (188)
                      ..|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+|
T Consensus        23 ~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~n  102 (162)
T 1ehw_A           23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYN  102 (162)
T ss_dssp             GGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred             hhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechh
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      ||+.||+++|||||..|+|+|||++||.+..+|..|..++
T Consensus       103 aV~~~R~l~G~T~p~~A~PgtIR~~fg~~~~~N~vHgSDs  142 (162)
T 1ehw_A          103 VVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDS  142 (162)
T ss_dssp             HHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEECSS
T ss_pred             HHHHHHHHhCCCCCCCCCCCChHHHhCCCCCCeEEEECCC
Confidence            9999999999999999999999999999988886554443

>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0

Probab=100.00  E-value=2.2e-41  Score=262.02  Aligned_cols=121  Identities=48%  Similarity=0.855  Sum_probs=113.7

Q ss_pred             CCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEee
Q psy6076          20 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEG   99 (188)
Q Consensus        20 ~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g   99 (188)
                      ...+|+|++|||||++++|++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|
T Consensus         6 ~~~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg   85 (156)
T 3js9_A            6 HHHMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEG   85 (156)
T ss_dssp             ---CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEE
T ss_pred             ccchhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEec
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         100 LNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       100 ~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      +|||+.||+++|||||.+|+|+|||++||.+..+|..+..+
T Consensus        86 ~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSD  126 (156)
T 3js9_A           86 PEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASS  126 (156)
T ss_dssp             TTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECC
T ss_pred             cchHHHHHHhcCCCCccccCCCCHHHHhCCCCCceeEEcCC
Confidence            99999999999999999999999999999999888655444

>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1

Probab=100.00  E-value=3.2e-41  Score=264.42  Aligned_cols=122  Identities=58%  Similarity=1.037  Sum_probs=115.8

Q ss_pred             cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076          19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE   98 (188)
Q Consensus        19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~   98 (188)
                      +....|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|+++|||++|++||+|||+++|+|+
T Consensus        17 ~~~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvle   96 (169)
T 1zs6_A           17 CTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQ   96 (169)
T ss_dssp             -CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred             hhhhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEe
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076          99 GLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus        99 g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |+|||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus        97 g~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSD  138 (169)
T 1zs6_A           97 GLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSD  138 (169)
T ss_dssp             STTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEECS
T ss_pred             cCCchHHHHHHhCCCCcccCCCCChHHHHcCCCcCceEEecC
Confidence            999999999999999999999999999999999998655444

>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1

Probab=100.00  E-value=1.1e-41  Score=262.68  Aligned_cols=118  Identities=50%  Similarity=0.801  Sum_probs=113.2

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      +|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+|+||
T Consensus         2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~na   81 (150)
T 1nb2_A            2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA   81 (150)
T ss_dssp             CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred             ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus        82 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSD  119 (150)
T 1nb2_A           82 AATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSD  119 (150)
T ss_dssp             HHHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECS
T ss_pred             HHHHHHHhCCCCcccCCCCChHHHhcCCccceeEEeCC
Confidence            99999999999999999999999999998888655443

>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1

Probab=100.00  E-value=3.9e-41  Score=266.46  Aligned_cols=122  Identities=49%  Similarity=0.898  Sum_probs=115.3

Q ss_pred             cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076          19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE   98 (188)
Q Consensus        19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~   98 (188)
                      ++..+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||++||+|+
T Consensus        28 ~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvle  107 (182)
T 1w7w_A           28 PEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWE  107 (182)
T ss_dssp             --CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEE
T ss_pred             ccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEe
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076          99 GLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus        99 g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |+|||+.||+++|||||..|+|+|||++||.+..+|..|..+
T Consensus       108 G~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSD  149 (182)
T 1w7w_A          108 GEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSD  149 (182)
T ss_dssp             STTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECC
T ss_pred             cccHHHHHHHHhCCCCCCCCCCCChHHHhCCCccceeEEeCC
Confidence            999999999999999999999999999999999998655444

>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*

Probab=100.00  E-value=3.3e-41  Score=262.45  Aligned_cols=120  Identities=48%  Similarity=0.806  Sum_probs=114.5

Q ss_pred             CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076          22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN  101 (188)
Q Consensus        22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n  101 (188)
                      ..|+||+|||||+++++++|+||++|+++||+|+++||+++|+++|++||.+|+++|||++|++||+|||++||+|+|+|
T Consensus         6 ~~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~   85 (160)
T 2dxe_A            6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRY   85 (160)
T ss_dssp             CEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred             cCCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccC
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCCCCCCCCcccchhhhhhh---hhhhhhhc
Q psy6076         102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCC---LLQCALYA  141 (188)
Q Consensus       102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~---n~~~~~~~  141 (188)
                      ||+.||+++|||||..|+|+|||++||.+..+   |..|..++
T Consensus        86 aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~~~~N~vHgSDs  128 (160)
T 2dxe_A           86 AVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDS  128 (160)
T ss_dssp             HHHHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSEEECSS
T ss_pred             HHHHHHHHhCCCCCCcCCCCChHHHhcCCcccCcCceEEcCCC
Confidence            99999999999999999999999999999999   86554443

>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*

Probab=100.00  E-value=2.1e-41  Score=269.24  Aligned_cols=128  Identities=38%  Similarity=0.616  Sum_probs=116.1

Q ss_pred             hhhhhccCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhH-----HhcCCCchhhhhchh
Q psy6076          13 CALYATASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYA-----ALKDKPFFESLIKYM   87 (188)
Q Consensus        13 i~sr~~~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~-----~~~~~~~~~~lv~~m   87 (188)
                      -.+++.+++..|+||+|||||+++++++|+||++|+++||+|+++||+++|+++|++||.     +|+++|||++|++||
T Consensus        16 ~~~~~~~~~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~m   95 (190)
T 4dz6_A           16 TQGPGSMSMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFI   95 (190)
T ss_dssp             -------CTTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHH
T ss_pred             ccCcccccchhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHh
Confidence            356777888999999999999999999999999999999999999999999999999999     999999999999999


Q ss_pred             ccCcEEEEEEeeCchhHHHHHHhCCCCCCCCCCCCcccchhhhh----------hhhhhhhhh
Q psy6076          88 SSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLV----------CCLLQCALY  140 (188)
Q Consensus        88 tsGp~val~l~g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~----------~~n~~~~~~  140 (188)
                      +|||+++|+|+|+|||+.||+++|||||..|+|+|||++||.+.          .+|+.|..+
T Consensus        96 tSGPvvamvleG~naV~~~R~l~GpTdP~~A~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSD  158 (190)
T 4dz6_A           96 SNSPVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASA  158 (190)
T ss_dssp             TTSEEEEEEEEEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCCHHHHHHHTCCCCCSEEECC
T ss_pred             cCCCEEEEEEecCCHHHHHHHHcCCCChhhcCCCChHHHhcCChhhhccccccccceeEEcCC
Confidence            99999999999999999999999999999999999999999998          777655444

>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1

Probab=100.00  E-value=2.9e-38  Score=252.69  Aligned_cols=121  Identities=36%  Similarity=0.600  Sum_probs=114.5

Q ss_pred             CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHh-------------H---------------
Q psy6076          21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHY-------------A---------------   72 (188)
Q Consensus        21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y-------------~---------------   72 (188)
                      +..|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||             .               
T Consensus        13 ~~~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~   92 (195)
T 1xqi_A           13 MPVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKI   92 (195)
T ss_dssp             -CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             chhhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhh
Confidence            457999999999999999999999999999999999999999999999999             8               


Q ss_pred             -----HhcCCCchhhhhchhccCcEEEEEEeeCchhHHHHHHhCCCCCCCCCCCCcccchhhhhhh----------hhhh
Q psy6076          73 -----ALKDKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCC----------LLQC  137 (188)
Q Consensus        73 -----~~~~~~~~~~lv~~mtsGp~val~l~g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~----------n~~~  137 (188)
                           +|.+++||++|++||+||||++|+|+|+|||+.||+++|||||..|+|+|||++||.+..+          |..|
T Consensus        93 ~~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~pgTIRg~fg~~~~~~~~~~~~~~~N~vH  172 (195)
T 1xqi_A           93 GTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVH  172 (195)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCCHHHHHHTTSCCCCSEE
T ss_pred             ccccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCCCCchhHhhcCchhhhccccccccceEEE
Confidence                 8999999999999999999999999999999999999999999999999999999999888          7666


Q ss_pred             hhhc
Q psy6076         138 ALYA  141 (188)
Q Consensus       138 ~~~~  141 (188)
                      ++++
T Consensus       173 gSDS  176 (195)
T 1xqi_A          173 ASDS  176 (195)
T ss_dssp             ECSS
T ss_pred             cCCC
Confidence            5554

>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A

Probab=99.92  E-value=1.8e-25  Score=192.82  Aligned_cols=92  Identities=14%  Similarity=0.277  Sum_probs=88.4

Q ss_pred             cCCCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEe
Q psy6076          19 ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWE   98 (188)
Q Consensus        19 ~~~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~   98 (188)
                      ..+..|+||+|||||++.++++|+||++|+++||+|+++||++|++++|++||.+|+     ++|++||+|||++||+|+
T Consensus       231 ~k~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vle  305 (352)
T 3bh7_B          231 QKSSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFN  305 (352)
T ss_dssp             CCSCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEE
T ss_pred             ccccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEE
Confidence            456789999999999999999999999999999999999999999999999999997     679999999999999999


Q ss_pred             eCchhHHHHHHhCCCCC
Q psy6076          99 GLNVIKVGRSMLGATNP  115 (188)
Q Consensus        99 g~naV~~~r~l~Gp~~~  115 (188)
                      |+|||+.||+++|+|+|
T Consensus       306 G~~av~~~R~l~g~t~p  322 (352)
T 3bh7_B          306 GDGAVEVCQLIVNEIFN  322 (352)
T ss_dssp             STTHHHHHHHHHHHHCT
T ss_pred             CcCHHHHHHHHhcCCCC
Confidence            99999999999999996

>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1

Probab=99.10  E-value=3.7e-11  Score=94.73  Aligned_cols=52  Identities=48%  Similarity=0.818  Sum_probs=41.7

Q ss_pred             hhhhcc--CCCCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076         137 CALYAT--ASPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD  188 (188)
Q Consensus       137 ~~~~~~--~~~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~  188 (188)
                      ++|++.  .....|+||++||||+++++++|+|+++|+++||+|+++|+++||+
T Consensus        20 ~~f~~~~~~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~   73 (182)
T 1w7w_A           20 LYFQGAMDPEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTK   73 (182)
T ss_dssp             ----------CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCH
T ss_pred             hhcCCCccccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCH
Confidence            444432  4456799999999999999999999999999999999999999984

>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}

Probab=99.04  E-value=9.4e-11  Score=90.77  Aligned_cols=44  Identities=66%  Similarity=1.125  Sum_probs=41.4

Q ss_pred             CCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076         145 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD  188 (188)
Q Consensus       145 ~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~  188 (188)
                      ...|+||++||||+++++++|+|+++|+++||+|+++|+++||+
T Consensus        11 ~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~   54 (161)
T 3b54_A           11 SQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADD   54 (161)
T ss_dssp             CCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCH
T ss_pred             cccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCH
Confidence            45789999999999999999999999999999999999999984

>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}

Probab=99.02  E-value=1.2e-10  Score=91.00  Aligned_cols=43  Identities=70%  Similarity=1.211  Sum_probs=40.8

Q ss_pred             CCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076         146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD  188 (188)
Q Consensus       146 ~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~  188 (188)
                      ..|+||++||||+++++++|+|+++|+++||+|+++|+++||+
T Consensus        23 ~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~   65 (172)
T 3l7u_A           23 NCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASE   65 (172)
T ss_dssp             GGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCH
T ss_pred             hhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCH
Confidence            3689999999999999999999999999999999999999984

>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*

Probab=99.01  E-value=1.5e-10  Score=91.76  Aligned_cols=45  Identities=44%  Similarity=0.836  Sum_probs=41.9

Q ss_pred             CCCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076         144 SPNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD  188 (188)
Q Consensus       144 ~~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~  188 (188)
                      +...|+||++||||+++++++|+|+++|+++||+|+++|++++|+
T Consensus        23 ~~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~   67 (190)
T 4dz6_A           23 SMLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDE   67 (190)
T ss_dssp             CTTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCH
T ss_pred             cchhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCH
Confidence            345789999999999999999999999999999999999999984

>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1

Probab=99.00  E-value=1.7e-10  Score=89.32  Aligned_cols=43  Identities=56%  Similarity=1.042  Sum_probs=40.8

Q ss_pred             CCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076         146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD  188 (188)
Q Consensus       146 ~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~  188 (188)
                      ..|+||++||||+++++++|+|+++|+++||+|+++|+++||+
T Consensus        23 ~~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~   65 (162)
T 1ehw_A           23 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPE   65 (162)
T ss_dssp             GGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred             hhceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCH
Confidence            3689999999999999999999999999999999999999984

>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1

Probab=98.97  E-value=2.4e-10  Score=89.18  Aligned_cols=44  Identities=66%  Similarity=1.079  Sum_probs=41.4

Q ss_pred             CCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076         145 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD  188 (188)
Q Consensus       145 ~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~  188 (188)
                      ...|+||++||||+++++++|+|+++|+++||+|+++|+++||+
T Consensus        19 ~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~   62 (169)
T 1zs6_A           19 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASE   62 (169)
T ss_dssp             GGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCH
T ss_pred             hhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCH
Confidence            45789999999999999999999999999999999999999984

>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A

Probab=98.56  E-value=3.6e-08  Score=84.94  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=41.2

Q ss_pred             CCCceeEEEEcCcccccCcHHHHHHHHHHcCceEEEEEeeecCC
Q psy6076         145 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD  188 (188)
Q Consensus       145 ~~~e~Tl~iIKP~~v~~~~~g~I~~~i~~~gf~I~~~k~~~ls~  188 (188)
                      ...|+||++||||+++++++|+|+++|+++||+|+++||+++|+
T Consensus       233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~  276 (352)
T 3bh7_B          233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKA  276 (352)
T ss_dssp             SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred             ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCH
Confidence            34689999999999999999999999999999999999999984

>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A

Probab=88.16  E-value=0.068  Score=39.57  Aligned_cols=16  Identities=6%  Similarity=-0.338  Sum_probs=14.8

Q ss_pred             CCcchhhhhhhhhhhc
Q psy6076           3 SKLLVCFLLQCALYAT   18 (188)
Q Consensus         3 ~~~~~g~~~~i~sr~~   18 (188)
                      +||+||+.|+||+|++
T Consensus        87 ~Dl~VG~~v~i~gR~f  102 (133)
T 2z14_A           87 YHFNVGTEVVFYGRTF  102 (133)
T ss_dssp             GGCCTTCEEEETTEEE
T ss_pred             HHcccCCEEEEecEEE
Confidence            6899999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1xqia1	182	d.58.6.1 (A:14-195) Nucleoside diphosphate kinase,	2e-42
d1xqia1	182	d.58.6.1 (A:14-195) Nucleoside diphosphate kinase,	2e-18
d3bbba1	150	d.58.6.1 (A:2-151) Nucleoside diphosphate kinase,	2e-41
d3bbba1	150	d.58.6.1 (A:2-151) Nucleoside diphosphate kinase,	7e-20
d1zs6a1	152	d.58.6.1 (A:18-169) Nucleoside diphosphate kinase,	1e-40
d1zs6a1	152	d.58.6.1 (A:18-169) Nucleoside diphosphate kinase,	3e-19
d1s57a_	153	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	3e-40
d1s57a_	153	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	1e-19
d1hlwa_	150	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	4e-39
d1hlwa_	150	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	2e-20
d2az3a1	152	d.58.6.1 (A:4-155) Nucleoside diphosphate kinase,	2e-38
d2az3a1	152	d.58.6.1 (A:4-155) Nucleoside diphosphate kinase,	9e-19
d1wkja1	137	d.58.6.1 (A:1-137) Nucleoside diphosphate kinase,	1e-37
d1wkja1	137	d.58.6.1 (A:1-137) Nucleoside diphosphate kinase,	3e-17
d1nhkl_	143	d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {	1e-37
d1nhkl_	143	d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {	4e-17
d1w7wa_	151	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	2e-37
d1w7wa_	151	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	5e-19
d1u8wa_	149	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	3e-37
d1u8wa_	149	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	3e-17
d1ehwa_	143	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	5e-37
d1ehwa_	143	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	2e-17
d2dyaa1	153	d.58.6.1 (A:6-158) Nucleoside diphosphate kinase,	6e-37
d2dyaa1	153	d.58.6.1 (A:6-158) Nucleoside diphosphate kinase,	1e-19
d1xiqa_	149	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	2e-36
d1xiqa_	149	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	1e-18
d1k44a_	135	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	2e-36
d1k44a_	135	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	8e-18
d1nb2a_	149	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	4e-35
d1nb2a_	149	d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {	1e-18
d2b8qa1	128	d.58.6.1 (A:2-129) Nucleoside diphosphate kinase,	6e-30
d2b8qa1	128	d.58.6.1 (A:2-129) Nucleoside diphosphate kinase,	9e-16

>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 182

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score =  138 bits (348), Expect = 2e-42
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 33/139 (23%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKD------- 76
           E+T +++KPD V RGLV +I+ RF++ G K++A+K V+A  + +   Y + ++       
Sbjct: 3   EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQ 62

Query: 77  --------------------------KPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSML 110
                                     +    +L+KYM+SGP V MV +G   +++ R ++
Sbjct: 63  KLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLV 122

Query: 111 GATNPADCIPGTIRGDLCL 129
           G T+P    PGTIRGD  +
Sbjct: 123 GPTSPHSAPPGTIRGDYSI 141

>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 182

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 76.7 bits (188), Expect = 2e-18
 Identities = 19/41 (46%), Positives = 31/41 (75%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           E+T +++KPD V RGLV +I+ RF++ G K++A+K V+A  
Sbjct: 3   EKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASP 43

>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (339), Expect = 2e-41
 Identities = 76/108 (70%), Positives = 92/108 (85%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A ++ L+ HY  LKD+PFF 
Sbjct: 2   NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
            L+KYM+SGPVV MVWEGLNV+K GR MLG TNPAD  PGTIRGD C+
Sbjct: 62  GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCI 109

>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (196), Expect = 7e-20
 Identities = 31/43 (72%), Positives = 40/43 (93%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           N ERTFI IKPDGVQRGLVG+I++RFE+KGF+L+AMKF++A +
Sbjct: 2   NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASE 44

>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human(Homo sapiens), NDK3 [TaxId: 9606]

 Score =  133 bits (335), Expect = 1e-40
 Identities = 70/124 (56%), Positives = 97/124 (78%), Gaps = 3/124 (2%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             ERTF+ +KPDGVQR LVG+IV+RFE KGFKL+A+K VQA ++LLR HYA L+++PF+ 
Sbjct: 3   AHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYG 62

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+KYM+SGPVV MVW+GL+V++  R+++GATNPAD  PGTIRGD C+    + +  ++ 
Sbjct: 63  RLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCI---EVGKNLIHG 119

Query: 142 TASP 145
           + S 
Sbjct: 120 SDSV 123

>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human(Homo sapiens), NDK3 [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 3e-19
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
             ERTF+ +KPDGVQR LVG+IV+RFE KGFKL+A+K VQA 
Sbjct: 3   AHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQAS 44

>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]

 Score =  132 bits (332), Expect = 3e-40
 Identities = 60/124 (48%), Positives = 83/124 (66%), Gaps = 3/124 (2%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           + E T+IM+KPDG+QRGLVG+I+ RFE+KGFKLI +K  Q   +L   HY  L  K FF 
Sbjct: 4   DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFP 63

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
           +LI+Y++SGPVV M WEG+ V+   R ++G T+P    PGTIRGDL +      +  ++ 
Sbjct: 64  NLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQT---GRNIVHG 120

Query: 142 TASP 145
           + SP
Sbjct: 121 SDSP 124

>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]

 Score = 78.9 bits (194), Expect = 1e-19
 Identities = 26/42 (61%), Positives = 34/42 (80%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           + E T+IM+KPDG+QRGLVG+I+ RFE+KGFKLI +K  Q  
Sbjct: 4   DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCP 45

>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  128 bits (324), Expect = 4e-39
 Identities = 57/124 (45%), Positives = 81/124 (65%), Gaps = 3/124 (2%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +     L  +HYA  K++PFF 
Sbjct: 2   NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFG 61

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+ +++SGPVV MV+EG  V+   R M+G TNP    PG+IRGD  + V    +  +  
Sbjct: 62  GLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDV---GRNIIAG 118

Query: 142 TASP 145
           + S 
Sbjct: 119 SDSV 122

>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 80.8 bits (199), Expect = 2e-20
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           NKERTF+ +KPDGV RGLVG+I+ R+E+KGF L+ +K +   
Sbjct: 2   NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPT 43

>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Halobacterium salinarum [TaxId: 2242]

 Score =  127 bits (319), Expect = 2e-38
 Identities = 56/125 (44%), Positives = 82/125 (65%), Gaps = 3/125 (2%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
           + ERTF+M+KPDGVQRGL+G IV R E KG K++  KF++ D++L   HYA  +DKPFF+
Sbjct: 1   HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFD 60

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L+ +++SGPV  MVWEG +  +  R ++GAT+  D  PGTIRGD    +       ++ 
Sbjct: 61  GLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDL---GHNLIHG 117

Query: 142 TASPN 146
           +   +
Sbjct: 118 SDHED 122

>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Halobacterium salinarum [TaxId: 2242]

 Score = 76.6 bits (188), Expect = 9e-19
 Identities = 25/43 (58%), Positives = 34/43 (79%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           + ERTF+M+KPDGVQRGL+G IV R E KG K++  KF++ D+
Sbjct: 1   HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDE 43

>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thermus thermophilus [TaxId: 274]

 Score =  125 bits (314), Expect = 1e-37
 Identities = 60/122 (49%), Positives = 86/122 (70%), Gaps = 3/122 (2%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERTF+MIKPDGV+RGLVG+I+ RFE KGF++ A+K +Q   +L   HYA  ++KPFF  L
Sbjct: 2   ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGL 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATA 143
           +++++SGPVV MV EG  V+   R M+GAT+P D +PGTIRGD    +    +  ++ +A
Sbjct: 62  VRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTI---DENVIHGSA 118

Query: 144 SP 145
           + 
Sbjct: 119 TL 120

>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thermus thermophilus [TaxId: 274]

 Score = 72.3 bits (177), Expect = 3e-17
 Identities = 26/40 (65%), Positives = 34/40 (85%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ERTF+MIKPDGV+RGLVG+I+ RFE KGF++ A+K +Q  
Sbjct: 2   ERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQIS 41

>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]} Length = 143

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Myxococcus xanthus [TaxId: 34]

 Score =  125 bits (314), Expect = 1e-37
 Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 3/122 (2%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT  +IKPDG+++G++GKI+ RFEEKG K +A++            YA  K +PFF+ L
Sbjct: 3   ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDL 62

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATA 143
           +++M SGPVV MV EG N +   R ++GATNPA    GTIR D    +    +  ++ + 
Sbjct: 63  VQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSI---DKNTVHGSD 119

Query: 144 SP 145
           S 
Sbjct: 120 SL 121

>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]} Length = 143

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Myxococcus xanthus [TaxId: 34]

 Score = 72.3 bits (177), Expect = 4e-17
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           ERT  +IKPDG+++G++GKI+ RFEEKG K +A++     
Sbjct: 3   ERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLS 42

>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Pea (Pisum sativum) [TaxId: 3888]

 Score =  124 bits (313), Expect = 2e-37
 Identities = 60/124 (48%), Positives = 82/124 (66%), Gaps = 3/124 (2%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+ +K +    +  + HY  LK++PFF 
Sbjct: 2   ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFN 61

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
            L  ++SSGPV+ MVWEG  VI  GR ++GAT+P    PGTIRGDL +    + +  ++ 
Sbjct: 62  GLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAV---VVGRNIIHG 118

Query: 142 TASP 145
           +  P
Sbjct: 119 SDGP 122

>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Pea (Pisum sativum) [TaxId: 3888]

 Score = 77.4 bits (190), Expect = 5e-19
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
             ERTFI IKPDGVQRGL+ +I+ RFE KGFKL+ +K +   
Sbjct: 2   ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPT 43

>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  124 bits (312), Expect = 3e-37
 Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 3/122 (2%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E+TFIMIKPDGVQRGL+G+++ RFE+KGF L  +K +  +      HY  L  K FF  L
Sbjct: 2   EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGL 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATA 143
           + Y+ SGPVV M+WEG NV+  GR ++GATNPA   PGTIRGD  +    + +  ++ + 
Sbjct: 62  VDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAI---DIGRNVIHGSD 118

Query: 144 SP 145
           S 
Sbjct: 119 SV 120

>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.4 bits (177), Expect = 3e-17
 Identities = 24/41 (58%), Positives = 33/41 (80%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           E+TFIMIKPDGVQRGL+G+++ RFE+KGF L  +K +  + 
Sbjct: 2   EQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVER 42

>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]} Length = 143

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens), NDK4 [TaxId: 9606]

 Score =  123 bits (309), Expect = 5e-37
 Identities = 62/124 (50%), Positives = 88/124 (70%), Gaps = 3/124 (2%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
            +ERT + +KPDGVQR LVG ++QRFE +GF L+ MK +QA + +L  HY  L+ KPF+ 
Sbjct: 4   TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYP 63

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
           +LI+YMSSGPVV MVWEG NV++  R+M+G T+ A+  PGTIRGD  + +    +  ++A
Sbjct: 64  ALIRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHI---SRNVIHA 120

Query: 142 TASP 145
           + S 
Sbjct: 121 SDSV 124

>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]} Length = 143

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens), NDK4 [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 2e-17
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
            +ERT + +KPDGVQR LVG ++QRFE +GF L+ MK +QA 
Sbjct: 4   TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAP 45

>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  123 bits (310), Expect = 6e-37
 Identities = 58/124 (46%), Positives = 81/124 (65%)

Query: 22  NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFE 81
             ERT ++IKPD V RGL+G+I+ RFE+KG K++ MK +  D +L   HY   ++KPFF+
Sbjct: 1   ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFK 60

Query: 82  SLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA 141
           +LI Y++  PVV MV EG   ++V R M GAT+P D  PGTIRGD  L V   +   ++A
Sbjct: 61  ALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHA 120

Query: 142 TASP 145
           + S 
Sbjct: 121 SDSK 124

>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 78.9 bits (194), Expect = 1e-19
 Identities = 22/43 (51%), Positives = 31/43 (72%)

Query: 146 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
             ERT ++IKPD V RGL+G+I+ RFE+KG K++ MK +  D 
Sbjct: 1   ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDR 43

>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score =  122 bits (307), Expect = 2e-36
 Identities = 63/108 (58%), Positives = 86/108 (79%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           E++FIMIKPDGVQRGLVG I++RFE+KG+KLIA+K +   +++L+ HY  L D+PFF++L
Sbjct: 2   EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNL 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLV 131
           + Y+S GPVV MVWEG++++K GR ++G TNP     GTIRGD CL V
Sbjct: 62  VAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEV 109

>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score = 76.2 bits (187), Expect = 1e-18
 Identities = 27/40 (67%), Positives = 35/40 (87%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           E++FIMIKPDGVQRGLVG I++RFE+KG+KLIA+K +   
Sbjct: 2   EKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPT 41

>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  121 bits (305), Expect = 2e-36
 Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 1/107 (0%)

Query: 24  ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESL 83
           ERT ++IKPDG++R L+G+I+ R E KG  + A++      +L   HYA  + KPFF SL
Sbjct: 2   ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADC-IPGTIRGDLCL 129
           +++++SGPVV  + EG   I   R + G T+P     PGTIRGD  L
Sbjct: 62  LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFAL 108

>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 73.9 bits (181), Expect = 8e-18
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 148 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADD 188
           ERT ++IKPDG++R L+G+I+ R E KG  + A++      
Sbjct: 2   ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSA 42

>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Bacillus halodenitrificans [TaxId: 1482]

 Score =  119 bits (298), Expect = 4e-35
 Identities = 61/123 (49%), Positives = 76/123 (61%), Gaps = 3/123 (2%)

Query: 23  KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFES 82
           KERTF+M+KPDGVQR LVG++V+RFE KG KL   K +         HYA L   PFF  
Sbjct: 1   KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGG 60

Query: 83  LIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYAT 142
           L+   +SGPV  MVWEGLN     R +LGATNP+D  PGTIRGD  +      + A++ +
Sbjct: 61  LVGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSA---GRNAIHGS 117

Query: 143 ASP 145
            S 
Sbjct: 118 DSA 120

>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]} Length = 149

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Bacillus halodenitrificans [TaxId: 1482]

 Score = 76.3 bits (187), Expect = 1e-18
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query: 147 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQAD 187
           KERTF+M+KPDGVQR LVG++V+RFE KG KL   K +   
Sbjct: 1   KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVIS 41

>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]} Length = 128

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mimivirus [TaxId: 315393]

 Score =  104 bits (261), Expect = 6e-30
 Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 5/106 (4%)

Query: 25  RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMK-FVQADDKLLRTHYAALKDKPFFESL 83
           RT ++IKPD  +R LV +I+ R E+K FK+++MK + +A   L+  HY    ++ +F   
Sbjct: 2   RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDN 61

Query: 84  IKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCL 129
             +M SGP++ +V+EG + I   R + G        PGTIRGDL  
Sbjct: 62  CDFMVSGPIISIVYEGTDAISKIRRLQGNILT----PGTIRGDLAN 103

>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]} Length = 128

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mimivirus [TaxId: 315393]

 Score = 68.2 bits (166), Expect = 9e-16
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 149 RTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQ 185
           RT ++IKPD  +R LV +I+ R E+K FK+++MKF  
Sbjct: 2   RTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWS 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1ehwa_	143	Nucleoside diphosphate kinase, NDK {Human (Homo sa	100.0
d2az3a1	152	Nucleoside diphosphate kinase, NDK {Archaeon Halob	100.0
d1wkja1	137	Nucleoside diphosphate kinase, NDK {Thermus thermo	100.0
d1zs6a1	152	Nucleoside diphosphate kinase, NDK {Human(Homo sap	100.0
d1hlwa_	150	Nucleoside diphosphate kinase, NDK {Dictyostelium	100.0
d1w7wa_	151	Nucleoside diphosphate kinase, NDK {Pea (Pisum sat	100.0
d3bbba1	150	Nucleoside diphosphate kinase, NDK {Human (Homo sa	100.0
d1nb2a_	149	Nucleoside diphosphate kinase, NDK {Bacillus halod	100.0
d1u8wa_	149	Nucleoside diphosphate kinase, NDK {Thale cress (A	100.0
d1nhkl_	143	Nucleoside diphosphate kinase, NDK {Myxococcus xan	100.0
d1xiqa_	149	Nucleoside diphosphate kinase, NDK {Plasmodium fal	100.0
d1s57a_	153	Nucleoside diphosphate kinase, NDK {Thale cress (A	100.0
d1k44a_	135	Nucleoside diphosphate kinase, NDK {Mycobacterium	100.0
d2dyaa1	153	Nucleoside diphosphate kinase, NDK {Archaeon Pyroc	100.0
d1xqia1	182	Nucleoside diphosphate kinase, NDK {Archaeon Pyrob	100.0
d2b8qa1	128	Nucleoside diphosphate kinase, NDK {Mimivirus [Tax	100.0

>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens), NDK4 [TaxId: 9606]

Probab=100.00  E-value=2.2e-42  Score=262.99  Aligned_cols=119  Identities=51%  Similarity=0.947  Sum_probs=114.3

Q ss_pred             CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076          22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN  101 (188)
Q Consensus        22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n  101 (188)
                      .+|+||+|||||+++++++|+||++|+++||.|+++|+++||+++|++||.+|.++|||++|++||+||||+||+|+|+|
T Consensus         4 ~~E~Tl~iIKPDav~~~~~g~Ii~~i~~~Gf~Iv~~k~~~lt~e~a~~~Y~~~~~k~f~~~lv~~m~sGp~~a~~l~g~n   83 (143)
T d1ehwa_           4 TRERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYN   83 (143)
T ss_dssp             GGCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred             ccceEEEEECchhhhcCCHHHHHHHHHHcCCEEeeeeeeecCHHHHHHHHHHHhcchhhhhhhheecCCCEEEEecchhh
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      ||+.||+++||+||.+|+|+|||++||++..+|+.|+.+
T Consensus        84 aV~~~R~l~Gpt~p~~a~p~siR~~yg~~~~~N~vH~Sd  122 (143)
T d1ehwa_          84 VVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASD  122 (143)
T ss_dssp             HHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEECS
T ss_pred             HHHHHHHHhcCCCcccCCCCCcHhhhhCcccCCCeECCC
Confidence            999999999999999999999999999999998655544

>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Halobacterium salinarum [TaxId: 2242]

Probab=100.00  E-value=4.8e-42  Score=263.47  Aligned_cols=135  Identities=44%  Similarity=0.782  Sum_probs=122.1

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|+++|||+.|++||+|||++||+|+|+||
T Consensus         2 ~ErTl~iIKPDav~~~~~geIi~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~~~~k~ff~~lv~~m~sGpvvalvl~g~~a   81 (152)
T d2az3a1           2 DERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADA   81 (152)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred             CceEEEEECcchhccCCHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHccCCcccccceeccccCCEEEEEEecCCH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhccCCCCCceeEEEEcCc
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYATASPNKERTFIMIKPD  157 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~~~~~~~e~Tl~iIKP~  157 (188)
                      |+.||+++||+||..|+|+|||++||.+..+|+.|++++.+++..++-+.+..|+
T Consensus        82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~SDs~e~A~~erEi~~fF~~  136 (152)
T d2az3a1          82 TRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDD  136 (152)
T ss_dssp             HHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHHHCCT
T ss_pred             HHHHHHHhCCCChhhcCCCCccceeEEEecCceEECCCChhhhhhhhhhhhccCh
Confidence            9999999999999999999999999999999976666654444323334445554

>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.7e-42  Score=258.59  Aligned_cols=118  Identities=50%  Similarity=0.880  Sum_probs=113.5

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      +|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus         1 ~E~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~f~~~lv~~m~SGp~~~l~l~g~na   80 (137)
T d1wkja1           1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV   80 (137)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred             CceeEEEECcchhhcCCHHHHHHHHHHCCCEEEEEEeecCCHHHHHhhhHHHhcccccccceeeeccCCEEEEEEEecch
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |++||+++||+||..|+|+|||++||.+..+|+.|..+
T Consensus        81 v~~~r~l~Gpt~p~~a~p~siR~~yg~~~~~N~vH~Sd  118 (137)
T d1wkja1          81 VAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSA  118 (137)
T ss_dssp             HHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECS
T ss_pred             hhhhhhhcccCCcCcCCCCChHHHhccccCCCCeeCCC
Confidence            99999999999999999999999999999998655544

>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human(Homo sapiens), NDK3 [TaxId: 9606]

Probab=100.00  E-value=6.8e-42  Score=262.54  Aligned_cols=120  Identities=59%  Similarity=1.049  Sum_probs=114.9

Q ss_pred             CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeC
Q psy6076          21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGL  100 (188)
Q Consensus        21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~  100 (188)
                      ..+|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|+++|||++|++||+||||++|+|.|+
T Consensus         2 ~~~ErTl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~f~~~Lv~~m~sGpvva~~l~g~   81 (152)
T d1zs6a1           2 GAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGL   81 (152)
T ss_dssp             GGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred             CCceeEEEEECcchhhcCCHHHHHHHHHHcCCEEEEEeeeeCCHHHHHHHHHHhhccccHHHHHhhcCCCCEEEEeccch
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         101 NVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       101 naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |||++||+++||+||..|.|+|||++||.+..+|..|..+
T Consensus        82 nav~~~R~l~Gptdp~~A~p~siR~~fg~~~~~N~vH~Sd  121 (152)
T d1zs6a1          82 DVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSD  121 (152)
T ss_dssp             THHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEECS
T ss_pred             hHHHHHHHHcCCCChhccCchhhhhhhcccccCCceECCC
Confidence            9999999999999999999999999999999998655444

>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=8.9e-42  Score=261.45  Aligned_cols=120  Identities=47%  Similarity=0.828  Sum_probs=114.7

Q ss_pred             CCcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeC
Q psy6076          21 PNKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGL  100 (188)
Q Consensus        21 ~~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~  100 (188)
                      +.+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|+++|||+.|++||+|||+++|+|.|+
T Consensus         1 ~~~E~Tl~iIKPDav~~~l~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~f~~~lv~~m~sGp~vam~l~g~   80 (150)
T d1hlwa_           1 VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGK   80 (150)
T ss_dssp             CTTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEST
T ss_pred             CCcceEEEEECcchhhcCCHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHhccCCccccccccccccCCeeeEEeecc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         101 NVIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       101 naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |||++||+++||+||..++|+|||++||.+..+|+.|+.+
T Consensus        81 naV~~~R~l~Gptdp~~~~p~tiR~~yg~~~~~N~vH~SD  120 (150)
T d1hlwa_          81 GVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIAGSD  120 (150)
T ss_dssp             THHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCCEEECS
T ss_pred             cHHHHHHHhhcCCCccccCchhhhhhheecccceeeECCC
Confidence            9999999999999999999999999999999998655443

>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=1.2e-41  Score=260.83  Aligned_cols=119  Identities=50%  Similarity=0.918  Sum_probs=114.3

Q ss_pred             CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076          22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN  101 (188)
Q Consensus        22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n  101 (188)
                      .+|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|
T Consensus         2 ~~E~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~Iv~~k~~~lt~e~a~~~Y~~~~~k~ff~~lv~~mtsGpv~al~l~g~n   81 (151)
T d1w7wa_           2 ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEG   81 (151)
T ss_dssp             TTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred             CcceEEEEECchhhhcCCHHHHHHHHHHCCCEEEEEEEEecCHHHHHHHHHHHHccccccchhhhccCCCEeeEeeccch
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      ||+.||+++|||||.+|+|+|||++||++..+|+.|+.+
T Consensus        82 aV~~~r~l~Gptdp~~a~p~siR~~fg~~~~~N~vH~Sd  120 (151)
T d1w7wa_          82 VITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSD  120 (151)
T ss_dssp             HHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECC
T ss_pred             hHHHHHHHhccCCccccCCCchhHhhccccCCceeeCCC
Confidence            999999999999999999999999999999999655444

>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-41  Score=260.77  Aligned_cols=120  Identities=64%  Similarity=1.107  Sum_probs=114.7

Q ss_pred             CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076          22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN  101 (188)
Q Consensus        22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n  101 (188)
                      +.|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|
T Consensus         2 ~~e~Tl~lIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~lv~~m~sgPv~al~l~g~n   81 (150)
T d3bbba1           2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLN   81 (150)
T ss_dssp             TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred             ChheeEEEECchhhhcCCHHHHHHHHHHCCCEEEEEEeecCCHHHHHHHHHHHhcchhhhhhheeecCCCEeeeeecccC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      ||++||+++|||||..|+|+|||++||.+..+|+.|++++
T Consensus        82 aV~~~R~l~Gpt~p~~a~p~tiR~~fg~~~~~N~vH~Sds  121 (150)
T d3bbba1          82 VVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDS  121 (150)
T ss_dssp             HHHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSS
T ss_pred             hHHHHHHHhCCCCccccCCcchHHhhcccccCcCEEcCCC
Confidence            9999999999999999999999999999999986554443

>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Bacillus halodenitrificans [TaxId: 1482]

Probab=100.00  E-value=5.3e-42  Score=262.36  Aligned_cols=118  Identities=50%  Similarity=0.801  Sum_probs=113.3

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      +|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus         1 kErTl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~~~ff~~lv~~mtsgP~~a~vl~g~na   80 (149)
T d1nb2a_           1 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA   80 (149)
T ss_dssp             CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred             CceEEEEECcchhccCCHHHHHHHHHHCCCEEEEEEeEecCHHHHHHHHHHHccCceecchhhhcccCceEEEEeecchh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |.+||+++||+||.+|+|+|||++||++..+|+.|+.+
T Consensus        81 V~~~R~l~Gptdp~~A~p~siR~~yg~~~~~N~vH~Sd  118 (149)
T d1nb2a_          81 AATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSD  118 (149)
T ss_dssp             HHHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECS
T ss_pred             HHHHHHHhCCCChhhcCcchhhhhheeeeccceeeCCC
Confidence            99999999999999999999999999999998654433

>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.5e-41  Score=259.83  Aligned_cols=119  Identities=49%  Similarity=0.889  Sum_probs=114.0

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      +|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|++++||+.|++||+|||++||+|+|+||
T Consensus         1 ~E~Tl~iIKPDav~~~~~geIi~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~gk~ff~~lv~~m~sGPv~a~~l~g~~a   80 (149)
T d1u8wa_           1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV   80 (149)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred             CceeEEEECchhhhccCHHHHHHHHHHcCCEEeEeeeeeCCHHHHHHHHHHHccchhhhhhhhhccCCCeeeeecccchH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |+.||+++||+||..|.|+|||++||.+..+|+.|++++
T Consensus        81 V~~~R~l~Gptdp~~A~p~tIR~~fg~~~~~N~vH~Sds  119 (149)
T d1u8wa_          81 VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDS  119 (149)
T ss_dssp             HHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSS
T ss_pred             HHHHHHHhccCCcccCCCCchhccccccccccceECCCC
Confidence            999999999999999999999999999999986555443

>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Myxococcus xanthus [TaxId: 34]

Probab=100.00  E-value=1.7e-41  Score=258.07  Aligned_cols=119  Identities=42%  Similarity=0.700  Sum_probs=114.2

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus         2 ~E~Tl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~~~ff~~lv~~mtSgpvva~vl~g~~a   81 (143)
T d1nhkl_           2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA   81 (143)
T ss_dssp             EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred             chheEEEEChhhhccCCHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHhhcccchHHHHHhccCCCCEEEEEEEecch
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |.+||+++|||||..|+|+|||++||.+..+|+.|++++
T Consensus        82 v~~~R~l~Gptdp~~a~p~tiR~~fg~~~~~N~vH~Sds  120 (143)
T d1nhkl_          82 VLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDS  120 (143)
T ss_dssp             HHHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEECSS
T ss_pred             HHHHHHhhcCCChhhccccchHhhhccccCcCCeECCCC
Confidence            999999999999999999999999999999986555543

>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=100.00  E-value=2.8e-41  Score=258.45  Aligned_cols=117  Identities=54%  Similarity=1.022  Sum_probs=112.5

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+||
T Consensus         1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~lv~~mtsGp~v~~~l~~~na   80 (149)
T d1xiqa_           1 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDM   80 (149)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEESTTH
T ss_pred             CceeEEEECcchhhcCCHHHHHHHHHHCCCEEEEEEeecCCHHHHHHHHHHHccccccchhhhhcccCCEEEEEeccchh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhh
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCAL  139 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~  139 (188)
                      |..||+++||+||..|+|+|||++||.+..+|+.|..
T Consensus        81 v~~~R~l~Gptdp~~a~~~siR~~fg~~~~~N~vHgS  117 (149)
T d1xiqa_          81 VKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGS  117 (149)
T ss_dssp             HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEEC
T ss_pred             hHHHHHhccCCCcccCCCCCccccceecccccceECC
Confidence            9999999999999999999999999999988864443

>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]

Probab=100.00  E-value=3.5e-41  Score=258.81  Aligned_cols=119  Identities=49%  Similarity=0.879  Sum_probs=114.3

Q ss_pred             CcceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCc
Q psy6076          22 NKERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLN  101 (188)
Q Consensus        22 ~~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~n  101 (188)
                      ..|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|+++|||++|++||+|||+++|+|+|+|
T Consensus         4 ~~e~Tl~iIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~f~~~lv~~mtSGPv~amvl~g~n   83 (153)
T d1s57a_           4 DVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVG   83 (153)
T ss_dssp             CCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETT
T ss_pred             hhheeEEEEChhhhhcCCHHHHHHHHHHCCCEEEEEEeecCCHHHHHHHHHHHhcchhHHHHHhhccCCCeeeeeecccc
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhh
Q psy6076         102 VIKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       102 aV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      ||+.||+++||+||..|.|+|||++||.+..+|+.|..+
T Consensus        84 av~~~r~l~Gpt~p~~A~p~tiR~~yg~~~~~N~vHgSd  122 (153)
T d1s57a_          84 VVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSD  122 (153)
T ss_dssp             HHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEECS
T ss_pred             hhhhHHHhccCCCccccCCCCchhhheeeccCceeECCC
Confidence            999999999999999999999999999999998655444

>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.3e-41  Score=253.65  Aligned_cols=118  Identities=41%  Similarity=0.733  Sum_probs=112.0

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|+|+||
T Consensus         1 tE~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~~~ff~~lv~~m~SGp~~~l~l~g~na   80 (135)
T d1k44a_           1 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA   80 (135)
T ss_dssp             CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred             CceEEEEECcchhccCCHHHHHHHHHHcCCEEEEEEeccCCHHHHHHHHHHHhccccccccceeecccCceeecccCccH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCC-CCCCcccchhhhhhhhhhhhhh
Q psy6076         103 IKVGRSMLGATNPADC-IPGTIRGDLCLLVCCLLQCALY  140 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a-~p~slRa~fg~~~~~n~~~~~~  140 (188)
                      |++||+++||+||..| +|+|||++||.+..+|..|..+
T Consensus        81 v~~~r~l~Gptdp~~a~~p~siR~~yg~~~~~N~vHgSd  119 (135)
T d1k44a_          81 IAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSD  119 (135)
T ss_dssp             HHHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEECS
T ss_pred             HHHHHHHhCCCCcccccCCCCcHHHhcCCccccCeECCC
Confidence            9999999999999765 8999999999999998655544

>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=9.8e-40  Score=250.70  Aligned_cols=117  Identities=50%  Similarity=0.867  Sum_probs=110.0

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      .|+||+|||||+++++++|+||++|+++||.|+++||++||+++|++||.+|+++|||++|++||+|||++||+|.|+||
T Consensus         2 ~ErTlaiIKPDav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~~~f~~~lv~~m~sGp~~alvl~~~na   81 (153)
T d2dyaa1           2 TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYA   81 (153)
T ss_dssp             EEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred             ceeEEEEECcchhhcCCHHHHHHHHHHCCCEEEEEEeeccCHHHHHHHHHHHhcccchHHHHHHHhhcceeeeeecccCH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhh---hhhhhhhh
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLV---CCLLQCAL  139 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~---~~n~~~~~  139 (188)
                      |++||+++|||||..|+|+|||++||.+.   .+|+.|..
T Consensus        82 v~~~r~l~Gptdp~~A~p~tiR~~fg~~~~d~~~N~vHgS  121 (153)
T d2dyaa1          82 VEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHAS  121 (153)
T ss_dssp             HHHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSEEEC
T ss_pred             HHHHHHHhCCCChhHcCCCCcchhhcccccccccCcccCC
Confidence            99999999999999999999999999653   34644433

>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=3.2e-40  Score=259.82  Aligned_cols=110  Identities=38%  Similarity=0.707  Sum_probs=105.8

Q ss_pred             cceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeecCHHHHHHHhHHhc---------------------------
Q psy6076          23 KERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQADDKLLRTHYAALK---------------------------   75 (188)
Q Consensus        23 ~e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~---------------------------   75 (188)
                      .|+||+|||||+++++++|+||++|+++||+|+++||++||+++|++||.+|+                           
T Consensus         2 ~ErTl~iIKPDav~~~lvg~Ii~~ie~~Gf~Iva~k~~~lt~e~a~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (182)
T d1xqia1           2 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGT   81 (182)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHSC
T ss_pred             CceEEEEECcchhccCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccccccc
Confidence            58999999999999999999999999999999999999999999999998875                           


Q ss_pred             ------CCCchhhhhchhccCcEEEEEEeeCchhHHHHHHhCCCCCCCCCCCCcccchhhhhh
Q psy6076          76 ------DKPFFESLIKYMSSGPVVPMVWEGLNVIKVGRSMLGATNPADCIPGTIRGDLCLLVC  132 (188)
Q Consensus        76 ------~~~~~~~lv~~mtsGp~val~l~g~naV~~~r~l~Gp~~~~~a~p~slRa~fg~~~~  132 (188)
                            ++|||++|++||+|||+++|+++|+|||++||+++|||||..|.|+|||++||.+..
T Consensus        82 ~~~~~~gk~f~~~Lv~~mtSgPvva~vleg~~aV~~~R~l~GptdP~~A~pgtIR~~fg~d~~  144 (182)
T d1xqia1          82 DDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSP  144 (182)
T ss_dssp             CCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCCH
T ss_pred             ccccccCCcchHHHHHHHhcCceEEEEecccCHHHHHHHHhCCCCcccCCCCccHHhhCcCcc
Confidence                  689999999999999999999999999999999999999999999999999998743

>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Mimivirus [TaxId: 315393]

Probab=100.00  E-value=1.4e-37  Score=232.40  Aligned_cols=114  Identities=37%  Similarity=0.649  Sum_probs=105.9

Q ss_pred             ceEEEEEcCccccCCchHHHHHHHHHcCCeEEcEEeeec-CHHHHHHHhHHhcCCCchhhhhchhccCcEEEEEEeeCch
Q psy6076          24 ERTFIMIKPDGVQRGLVGKIVQRFEEKGFKLIAMKFVQA-DDKLLRTHYAALKDKPFFESLIKYMSSGPVVPMVWEGLNV  102 (188)
Q Consensus        24 e~Tl~lIKPd~~~~~~~g~Ii~~i~~~Gf~I~~~k~~~l-s~~~a~~~y~~~~~~~~~~~lv~~mtsGp~val~l~g~na  102 (188)
                      |+||+|||||+++++++|+||++|+++||.|+++||+.+ +++.|++||.+|.++|||++|++||+||||+||+|+|+||
T Consensus         1 QrTl~iIKPdav~~~~~geIi~~i~~~Gf~Iv~~k~~~~~~~~~a~~~y~~~~~k~f~~~lv~~m~sGpv~al~l~g~na   80 (128)
T d2b8qa1           1 QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDA   80 (128)
T ss_dssp             EEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred             CeEEEEECcchhhcCCHHHHHHHHHHCCCEEeehhhhhhhHHHHHHHhhhhhcccchhcchhhcCCCCCEEEeeeeccch
Confidence            689999999999999999999999999999999999875 5778999999999999999999999999999999999999


Q ss_pred             hHHHHHHhCCCCCCCCCCCCcccchhhhhhhhhhhhhhc
Q psy6076         103 IKVGRSMLGATNPADCIPGTIRGDLCLLVCCLLQCALYA  141 (188)
Q Consensus       103 V~~~r~l~Gp~~~~~a~p~slRa~fg~~~~~n~~~~~~~  141 (188)
                      |++||+++||+    ++|+|||++||.+..+|..|..++
T Consensus        81 V~~~R~l~G~~----~~p~siR~~fg~~~~~N~vH~Sds  115 (128)
T d2b8qa1          81 ISKIRRLQGNI----LTPGTIRGDLANDIRENLIHASDS  115 (128)
T ss_dssp             HHHHHHHHCCT----TCTTSHHHHHCCCSSCCSEEECCS
T ss_pred             HHHHHHhcccc----CCCCChHHHhcCCccccCeECCCC
Confidence            99999999987    469999999999999986655543