Psyllid ID: psy6080

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MSLRFPQKANRRPIGQIVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKEKEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG
Secondary Structure (PSIPRED)
ccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccEEEEccccccccccHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccccccEEEEEEcccEEEEEEcccccHHHHHHHHHHHHHccccccEEEEHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHccccccccccccccccccccccccEEccccccccccccccccccccccccccccccEEEcccEEEEEcccccccHHHHHHHHHHHHHccccccccEEEEEccccccccccccccccccccccccEEEEEEcccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHccccEcHHHcccccc
Coil and Loop (DISEMBL)
mslrfpqkanrrpigqIVCTaglknikkppnydhivmperprlkfvdkvptfiynhktprttkrldllrgpeEIHNYLIHKQYGLValsggrmnyrHFETIRFAMMRKLDVKKMFAVwrvdppwlpvtkkglgsrmgggkgsidhyvtpvktGRIIIEVGgkcsyeevLPYLRScaskmpfkcmpcnEDILREMKEKEEREardninpyTFEYMIKNNIGNCRQWISTHVDykyfgkyfg
Flexible Loop (DISEMBL)
mslrfpqkanrrpigqivctaglknikkppnydhivmperprlkfvdkvptfiynhktprttkrldllrGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAvwrvdppwlpvtkkglgsrmgggkgsidhyvtpvKTGRIIIEVGGKCSYEEVLPYLRScaskmpfkcMPCNEDILREMKEKEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG
Low Complexity Region (SEG)
MSLRFPQKANRRPIGQIVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTkkglgsrmgggkgSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILremkekeereARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG
Disordered region (IsUnstruct)
*************IGQIVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDIL*************NINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYF*
Disordered Region (DISOPRED)
****************IVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHK**************EEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTK**********KGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN********************PYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG
Disordered Region (DISEMBL)
*********NRRPIGQIVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKEKEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG
Disordered Region (DISPRO)
*SLRFPQKANRRPIGQIVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHK******RLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGL*******KGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKEKEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFG*YFG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRFPQKANRRPIGQIVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKEKEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q5R7L3	251	39S ribosomal protein L16	yes	N/A	0.908	0.868	0.391	5e-47
Q9NX20	251	39S ribosomal protein L16	yes	N/A	0.908	0.868	0.391	5e-47
Q3T0J3	251	39S ribosomal protein L16	yes	N/A	0.908	0.868	0.396	1e-45
Q99N93	251	39S ribosomal protein L16	yes	N/A	0.908	0.868	0.400	3e-45
Q5M818	251	39S ribosomal protein L16	yes	N/A	0.925	0.884	0.398	4e-45
B9LJD9	151	50S ribosomal protein L16	yes	N/A	0.504	0.801	0.379	2e-12
A9WH73	151	50S ribosomal protein L16	yes	N/A	0.504	0.801	0.379	2e-12
A8ESV0	141	50S ribosomal protein L16	yes	N/A	0.512	0.872	0.373	4e-12
B9L6M6	141	50S ribosomal protein L16	yes	N/A	0.466	0.794	0.382	1e-11
B2V7K6	138	50S ribosomal protein L16	yes	N/A	0.437	0.760	0.398	2e-11

>sp|Q5R7L3|RM16_PONAB 39S ribosomal protein L16, mitochondrial OS=Pongo abelii GN=MRPL16 PE=2 SV=1

 Score =  187 bits (476), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 139/222 (62%), Gaps = 4/222 (1%)

Query: 19  CTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYL 78
            +AG+K +   P+++ + +PE+P+L+F+++ P      K  R  K L  +RGP       
Sbjct: 26  ASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLV---PKVRREPKNLSDIRGPSTEATEF 82

Query: 79  IHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGG 138
               + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+ P+T+K +G RMGG
Sbjct: 83  TEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGG 142

Query: 139 GKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKEKE 198
           GKG+IDHYVTPVK GR+++E+GG+C +EEV  +L   A K+PF     +   L +M++ +
Sbjct: 143 GKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKMRKDQ 202

Query: 199 EREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
           E   R+N NP+TFE +   N+   R+ +S + D  + GKY+G
Sbjct: 203 EERERNNQNPWTFERIATANMLGIRKVLSPY-DLTHKGKYWG 243

Component of the large subunit of mitochondrial ribosome.
Pongo abelii (taxid: 9601)

>sp|Q9NX20|RM16_HUMAN 39S ribosomal protein L16, mitochondrial OS=Homo sapiens GN=MRPL16 PE=1 SV=1

 Score =  187 bits (476), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 139/222 (62%), Gaps = 4/222 (1%)

Query: 19  CTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYL 78
            +AG+K +   P+++ + +PE+P+L+F+++ P      K  R  K L  +RGP       
Sbjct: 26  ASAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLV---PKVRREPKNLSDIRGPSTEATEF 82

Query: 79  IHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGG 138
               + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+ P+T+K +G RMGG
Sbjct: 83  TEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGG 142

Query: 139 GKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKEKE 198
           GKG+IDHYVTPVK GR+++E+GG+C +EEV  +L   A K+PF     +   L +M++ +
Sbjct: 143 GKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKMRKDQ 202

Query: 199 EREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
           E   R+N NP+TFE +   N+   R+ +S + D  + GKY+G
Sbjct: 203 EERERNNQNPWTFERIATANMLGIRKVLSPY-DLTHKGKYWG 243

Component of the large subunit of mitochondrial ribosome.

Homo sapiens (taxid: 9606)

>sp|Q3T0J3|RM16_BOVIN 39S ribosomal protein L16, mitochondrial OS=Bos taurus GN=MRPL16 PE=1 SV=1

 Score =  183 bits (464), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 137/222 (61%), Gaps = 4/222 (1%)

Query: 19  CTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYL 78
             AGLK +   P ++ + +PE+P+L+FV++ P      K  R  K L  +RGP       
Sbjct: 26  ARAGLKTLLPVPTFEDVSIPEKPKLRFVERAPLV---PKVRREPKNLRDIRGPSTEATEF 82

Query: 79  IHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGG 138
               + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+  +T+KG+G RMGG
Sbjct: 83  TEGNFAILALGGGYLHWGHFEMMRLTINRFMDPKNMFALWRVPAPFKAITRKGMGQRMGG 142

Query: 139 GKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKEKE 198
           GKG+IDHYVTPVK GR+I+EVGG+C ++EV   L   A K+PF     + + L ++++ +
Sbjct: 143 GKGAIDHYVTPVKAGRLIVEVGGRCEFQEVQGILNQVAHKLPFPAKAVSRETLEKIQKDQ 202

Query: 199 EREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
           E   R+N NP+TFE +   N+   R+ +S + D  + G+Y+G
Sbjct: 203 EERERNNQNPWTFERIATANMLGIRKVLSPY-DLTHRGRYWG 243

Component of the large subunit of mitochondrial ribosome.

Bos taurus (taxid: 9913)

>sp|Q99N93|RM16_MOUSE 39S ribosomal protein L16, mitochondrial OS=Mus musculus GN=Mrpl16 PE=2 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/222 (40%), Positives = 136/222 (61%), Gaps = 4/222 (1%)

Query: 19  CTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYL 78
            +AGLK +   P ++++ +PER +LKFV++VP      K  R  K L  +RGP       
Sbjct: 26  TSAGLKTLLPVPTFENVSIPERSKLKFVERVPLV---PKVRREPKNLKDIRGPSTEATDF 82

Query: 79  IHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGG 138
               + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+ P+T+KG+G RMGG
Sbjct: 83  TEGNFAILALGGGYLHWGHFEMMRLTINRFMDPKNMFAIWRVPAPFKPITRKGVGQRMGG 142

Query: 139 GKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKEKE 198
           GKG+IDHYVTPVKTG +++E+GG+C +EEV   L   A K+PF     +   L  M + +
Sbjct: 143 GKGAIDHYVTPVKTGCLVVEMGGRCEFEEVKGILNQVAHKLPFPAKAVSRKTLERMHQNQ 202

Query: 199 EREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
                +N NP+TFE++   N+   R+++S + D    G+Y+G
Sbjct: 203 RERELNNQNPWTFEHIATANMFGIRKFLSPY-DLTQKGRYWG 243

Component of the large subunit of mitochondrial ribosome.

Mus musculus (taxid: 10090)

>sp|Q5M818|RM16_RAT 39S ribosomal protein L16, mitochondrial OS=Rattus norvegicus GN=Mrpl16 PE=2 SV=1

 Score =  181 bits (459), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 138/226 (61%), Gaps = 4/226 (1%)

Query: 15  GQIVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEI 74
             +  +AGLK +   P ++++ +PER +LKFV++VP      K  R  K L  +RGP   
Sbjct: 22  AALPTSAGLKTLLPVPTFENVSIPERSKLKFVERVPLV---PKVRREPKNLKDIRGPSAE 78

Query: 75  HNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGS 134
                   + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+ P+T+KG+G 
Sbjct: 79  ATDFTEGNFAILALGGGYLHWGHFEMMRLTINRFMDPKNMFAIWRVPAPFKPITRKGVGQ 138

Query: 135 RMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREM 194
           RMGGGKG+IDHYVTPVKTG +I+E+GG+C +EEV   L   A K+PF     +   L +M
Sbjct: 139 RMGGGKGAIDHYVTPVKTGCLIVEMGGRCEFEEVKRVLNQVAHKLPFPAKAVSRKTLEKM 198

Query: 195 KEKEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
            + ++    +N NP+TFE +   N+   R+++S + D    G+Y+G
Sbjct: 199 HQNQKERELNNQNPWTFERIATANMFGIRKFLSPY-DLTQKGRYWG 243

Component of the large subunit of mitochondrial ribosome.

Rattus norvegicus (taxid: 10116)

>sp|B9LJD9|RL16_CHLSY 50S ribosomal protein L16 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplP PE=3 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 3/124 (2%)

Query: 76  NYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSR 135
           N ++  +YGL+AL    ++ R  E  R A+     VK+   VW    P  PVT+K   +R
Sbjct: 25  NNVVFGEYGLMALEPSWISSRQIEAARRAITNY--VKRGGKVWIRIFPDKPVTRKPAETR 82

Query: 136 MGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMK 195
           MGGGKGS+DH+V  VK GRI+ E+ G    +     LR  A K+P KC   + +    M 
Sbjct: 83  MGGGKGSVDHWVAVVKPGRIMFELAG-VREDVAHEALRRAAQKLPIKCKVIDREEQGTMA 141

Query: 196 EKEE 199
           + EE
Sbjct: 142 KPEE 145

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.

Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) (taxid: 480224)

>sp|A9WH73|RL16_CHLAA 50S ribosomal protein L16 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplP PE=3 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 3/124 (2%)

Query: 76  NYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSR 135
           N ++  +YGL+AL    ++ R  E  R A+     VK+   VW    P  PVT+K   +R
Sbjct: 25  NNVVFGEYGLMALEPSWISSRQIEAARRAITNY--VKRGGKVWIRIFPDKPVTRKPAETR 82

Query: 136 MGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMK 195
           MGGGKGS+DH+V  VK GRI+ E+ G    +     LR  A K+P KC   + +    M 
Sbjct: 83  MGGGKGSVDHWVAVVKPGRIMFELAG-VREDVAHEALRRAAQKLPIKCKVIDREEQGTMA 141

Query: 196 EKEE 199
           + EE
Sbjct: 142 KPEE 145

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.

Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602)

>sp|A8ESV0|RL16_ARCB4 50S ribosomal protein L16 OS=Arcobacter butzleri (strain RM4018) GN=rplP PE=3 SV=1

 Score = 72.0 bits (175), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 63/126 (50%), Gaps = 3/126 (2%)

Query: 69  RGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVT 128
           RG     N L +  +G+ A+  GR++ R  E  R AM RK  VK+   VW +  P  P+T
Sbjct: 18  RGMAHRGNSLAYGDFGIKAVEHGRIDSRQIEASRIAMTRK--VKRQAKVWIMVFPDKPLT 75

Query: 129 KKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE 188
            K L +RMG GKGS+D +V  +K GRI  E+ G    E     L     K+PFK      
Sbjct: 76  AKPLETRMGKGKGSVDKWVMNIKPGRICFEMAG-VGEELAREALALAMHKLPFKTKIVTR 134

Query: 189 DILREM 194
           D   E+
Sbjct: 135 DSENEL 140

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.

Arcobacter butzleri (strain RM4018) (taxid: 367737)

>sp|B9L6M6|RL16_NAUPA 50S ribosomal protein L16 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rplP PE=3 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 3/115 (2%)

Query: 69  RGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVT 128
           RG     + L    YGL A+  GR+N R  E  R A+ R +  K+   +W    P  P+T
Sbjct: 18  RGKAYRGSTLAFGTYGLKAVELGRINSRQIEAGRVALSRTM--KRTGKIWIRVFPDKPLT 75

Query: 129 KKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
            K +G RMG GKGS++ +V  +K GRII E+ G  + E  +  L   A+K+PFK 
Sbjct: 76  AKPVGVRMGKGKGSVEEWVMNIKPGRIIFEITG-VNNETAVRALTLAAAKLPFKT 129

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.

Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) (taxid: 598659)

>sp|B2V7K6|RL16_SULSY 50S ribosomal protein L16 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplP PE=3 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 76  NYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSR 135
           N +   +YGL AL  GR+  R  E  R A++R  + KK   VW    P  PVTKK   +R
Sbjct: 27  NQVDFGEYGLQALEPGRLTSRQIEAARIAIVR--EAKKGAKVWIRVFPHKPVTKKPAETR 84

Query: 136 MGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
           MG GKG +DHY   VK G I+ E+ G    E      R    K+P K 
Sbjct: 85  MGKGKGDLDHYEAIVKPGHILFELAG-VPEEVAAEAFRKAGHKLPIKT 131

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.

Sulfurihydrogenibium sp. (strain YO3AOP1) (taxid: 436114)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
170035603	482	gar2 [Culex quinquefasciatus] gi|1678776	0.845	0.421	0.563	4e-68
332375959	246	unknown [Dendroctonus ponderosae]	0.945	0.922	0.504	9e-67
91089781	237	PREDICTED: similar to AGAP004985-PA [Tri	0.95	0.962	0.537	8e-66
321468939	216	hypothetical protein DAPPUDRAFT_92746 [D	0.895	0.995	0.532	2e-65
289742369	240	mitochondrial ribosomal protein L16 [Glo	0.920	0.920	0.522	8e-64
193693022	245	PREDICTED: 39S ribosomal protein L16, mi	0.925	0.906	0.508	5e-62
18079268	243	mitochondrial ribosomal protein L16, iso	0.925	0.913	0.475	5e-62
3256104	254	EG:63B12.2 [Drosophila melanogaster]	0.925	0.874	0.475	8e-62
195347751	243	GM19177 [Drosophila sechellia] gi|194121	0.920	0.909	0.477	2e-61
194912731	243	GG12889 [Drosophila erecta] gi|190648240	0.925	0.913	0.475	3e-61

>gi|170035603|ref|XP_001845658.1| gar2 [Culex quinquefasciatus] gi|167877631|gb|EDS41014.1| gar2 [Culex quinquefasciatus]

 Score =  263 bits (672), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 115/204 (56%), Positives = 154/204 (75%), Gaps = 1/204 (0%)

Query: 35  IVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMN 94
           +V+PERP+L+F+DKVP    N K P+  K+L  +RGPE +HN L+HKQYG+VA  GGR+ 
Sbjct: 279 VVIPERPKLRFMDKVPILPSNMKAPKLQKKLKFMRGPETVHNSLLHKQYGIVATGGGRLR 338

Query: 95  YRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGR 154
           + HFE IR  + RK+DV +MFA WRVD PW P+TKKG G RMGGGK +IDHYVTPVK+GR
Sbjct: 339 WGHFEMIRLGIGRKMDVSRMFAAWRVDAPWQPITKKGQGQRMGGGKSAIDHYVTPVKSGR 398

Query: 155 IIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKEKEEREARDNINPYTFEYM 214
           +I+E+ GKC + EV P L +   K+PFK M  + ++L EMK +EER  RDN+N Y+ +Y+
Sbjct: 399 VIVEMAGKCEFAEVKPILETVCHKLPFKAMVVSHEMLEEMKAEEERLKRDNLNEYSLKYI 458

Query: 215 IKNNIGNCRQWISTHVDYKYFGKY 238
           I+NN+G C +W+S  VD+K+FGKY
Sbjct: 459 IQNNMGGCHRWLSP-VDHKWFGKY 481

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375959|gb|AEE63120.1| unknown [Dendroctonus ponderosae]

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 115/228 (50%), Positives = 161/228 (70%), Gaps = 1/228 (0%)

Query: 11  RRPIGQIVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRG 70
           R P   +V   G KN + PP YD I MPE+P+L+F+DK+P    N + P+  KRL  +RG
Sbjct: 19  RAPAVSLVQKCGFKNFRAPPTYDDIEMPEKPKLRFIDKIPNLPPNIRPPKMQKRLRYMRG 78

Query: 71  PEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKK 130
           PEE HN+L HKQ+G++A  GGR+ + HFE +R  + R+LD  +MFA+WRVD PW PVTK+
Sbjct: 79  PEETHNFLQHKQFGIIATGGGRLKWAHFEMMRLTIGRQLDTSRMFALWRVDSPWQPVTKR 138

Query: 131 GLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDI 190
           G G R+GGGKG+IDHYVTP+K GR+I+E+GGKC + EV  +L   A+K+PFK +  ++ +
Sbjct: 139 GQGMRLGGGKGAIDHYVTPIKAGRVILELGGKCEFREVEGFLTDVANKLPFKAIAVSQKM 198

Query: 191 LREMKEKEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKY 238
           L EM+ KE+ E  +N N YT +Y+I+NN+  C QW+S   D++ F KY
Sbjct: 199 LTEMQRKEKWEEENNQNRYTMKYLIQNNMNGCHQWLSP-FDFRNFCKY 245

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089781|ref|XP_967683.1| PREDICTED: similar to AGAP004985-PA [Tribolium castaneum] gi|91094701|ref|XP_969519.1| PREDICTED: similar to AGAP004985-PA [Tribolium castaneum] gi|270013618|gb|EFA10066.1| hypothetical protein TcasGA2_TC012240 [Tribolium castaneum] gi|270016519|gb|EFA12965.1| hypothetical protein TcasGA2_TC001416 [Tribolium castaneum]

 Score =  256 bits (653), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 123/229 (53%), Positives = 170/229 (74%), Gaps = 1/229 (0%)

Query: 11  RRPIGQIVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRG 70
           R P   I+ + G+K+   PPNYDHI +PERP+L+F+DKVP      + P+  K+L L+RG
Sbjct: 10  RVPSVHILQSCGMKHFPPPPNYDHIQLPERPKLRFMDKVPYIPPGSRAPKMQKKLRLMRG 69

Query: 71  PEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKK 130
           PE +HN+LIH+QYG+VAL GGR+ + HFE +R A+ RK+D  +MFA+WRVD PW PVTKK
Sbjct: 70  PETVHNFLIHQQYGIVALGGGRLKWPHFEMMRLAIGRKIDPDRMFAIWRVDAPWQPVTKK 129

Query: 131 GLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDI 190
           G G RMGGGKG+IDHYVTP+K GR+I+EVGGKC ++EV  +L + A K+PF+ M  + ++
Sbjct: 130 GQGQRMGGGKGAIDHYVTPIKAGRVILEVGGKCEFKEVKGFLHNIAMKLPFQAMAVSHEM 189

Query: 191 LREMKEKEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYF 239
           L+E +EKE+ E  +N N YT +Y ++NN+G C +W+S   DYK+ GKY 
Sbjct: 190 LKEREEKEKWEEENNQNYYTMKYCMQNNMGGCHKWMSP-FDYKFLGKYL 237

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321468939|gb|EFX79922.1| hypothetical protein DAPPUDRAFT_92746 [Daphnia pulex]

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/216 (53%), Positives = 155/216 (71%), Gaps = 1/216 (0%)

Query: 23  LKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQ 82
           +KN + PP+Y HI +PERP+L+F DKVPT+  N K P+ +KRL  +RGPE IH   IHKQ
Sbjct: 1   MKNFQPPPDYSHIQLPERPKLQFKDKVPTYPSNLKPPKMSKRLTFMRGPEPIHTEFIHKQ 60

Query: 83  YGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGS 142
           YG+VAL GGR++  H E IR  + RK+D  KMFAVWR+D PW P+T+KG G RMGGGKG+
Sbjct: 61  YGIVALCGGRLHSGHIEMIRMTINRKMDPSKMFAVWRIDSPWQPLTRKGQGKRMGGGKGA 120

Query: 143 IDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKEKEEREA 202
           IDHYV P+K GR+I+E+GGKC +E+  P+L+  A  +PFK    + +++   K +++R  
Sbjct: 121 IDHYVVPIKAGRVIVELGGKCEFEQAFPFLKEVAHILPFKAKATSYELMEAEKIEQQRLK 180

Query: 203 RDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKY 238
             NINPYT EY+I+NN+G C  WIS   D K++ KY
Sbjct: 181 NVNINPYTAEYVIRNNMGGCHTWISPS-DKKWYFKY 215

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742369|gb|ADD19932.1| mitochondrial ribosomal protein L16 [Glossina morsitans morsitans]

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 116/222 (52%), Positives = 156/222 (70%), Gaps = 1/222 (0%)

Query: 18  VCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNY 77
           + TAGLK    P  Y+     ERP+L+ ++KVP +  N + P+  KRL L+RGPE IHN 
Sbjct: 20  IRTAGLKYFGPPIQYEDFQPVERPKLRVMEKVPQYPPNIRPPKMQKRLKLMRGPELIHNT 79

Query: 78  LIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMG 137
           L+HKQYG++A  GGR+ + HFE IR  + RK+DV +M A WRV PPW P+TKKG G RMG
Sbjct: 80  LLHKQYGIIATGGGRLRWGHFEMIRNTIGRKIDVSRMIATWRVPPPWQPLTKKGQGQRMG 139

Query: 138 GGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKEK 197
           GGKG+IDHYVTP+K+GR+IIE+ GKC + EV P L+  A  +PFK    +EDIL+E  + 
Sbjct: 140 GGKGAIDHYVTPIKSGRVIIEISGKCEFAEVAPMLKQVAHLLPFKAEAISEDILQERIKM 199

Query: 198 EEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYF 239
           EE+  R N NP+T +Y+I+NN+  C +W+S   D+K+FGKY 
Sbjct: 200 EEQLERSNTNPFTMKYVIQNNLNGCHRWLSP-FDHKWFGKYL 240

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193693022|ref|XP_001951095.1| PREDICTED: 39S ribosomal protein L16, mitochondrial-like [Acyrthosiphon pisum]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 114/224 (50%), Positives = 155/224 (69%), Gaps = 2/224 (0%)

Query: 16  QIVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNH-KTPRTTKRLDLLRGPEEI 74
           Q+    G+KN K P  YDHI MPERP+L ++D+VP +  +  K P+  K L L+RGPE +
Sbjct: 22  QVNNVRGIKNFKPPVLYDHIQMPERPKLHYIDRVPNYSNSQIKPPKMHKMLGLMRGPETV 81

Query: 75  HNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGS 134
           HN LIHKQYG+ A  GGRM + HFE IR  ++RKLD  +MFA+WR+D PW  VTKKG G 
Sbjct: 82  HNKLIHKQYGIQATGGGRMRFIHFEVIRMGLLRKLDWSRMFAIWRIDSPWQAVTKKGQGQ 141

Query: 135 RMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREM 194
           RMGGGKG+IDHYVTP+++GRIIIE+ G C Y EV   L   ++K+PFK    +++ +   
Sbjct: 142 RMGGGKGNIDHYVTPIRSGRIIIEIAGHCEYVEVKDILSKISAKLPFKAKAVSQETMEWD 201

Query: 195 KEKEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKY 238
             KE+ ++ +N N YT EY+IKNN+ + ++ I   +D+ YFGKY
Sbjct: 202 LAKEQWQSENNQNKYTMEYLIKNNMDDLQRKIKK-IDHLYFGKY 244

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18079268|ref|NP_525041.1| mitochondrial ribosomal protein L16, isoform A [Drosophila melanogaster] gi|442614816|ref|NP_001259148.1| mitochondrial ribosomal protein L16, isoform B [Drosophila melanogaster] gi|7290223|gb|AAF45685.1| mitochondrial ribosomal protein L16, isoform A [Drosophila melanogaster] gi|16197935|gb|AAL13736.1| LD21404p [Drosophila melanogaster] gi|220943820|gb|ACL84453.1| mRpL16-PA [synthetic construct] gi|220953722|gb|ACL89404.1| mRpL16-PA [synthetic construct] gi|440216331|gb|AGB94994.1| mitochondrial ribosomal protein L16, isoform B [Drosophila melanogaster]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 106/223 (47%), Positives = 155/223 (69%), Gaps = 1/223 (0%)

Query: 17  IVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHN 76
           IV TAGLK    P  Y ++  PERP+L+ +++ P    N + P+  KRL  +RGPE +HN
Sbjct: 22  IVNTAGLKYFAPPIKYQNVEQPERPKLRVIERQPQLPPNIRPPKMQKRLRYMRGPEMVHN 81

Query: 77  YLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRM 136
            L+HKQY +VA  GGR+ + H+E +R  + RK++V  MFA WRV  PW P+TKKG G RM
Sbjct: 82  TLLHKQYAIVATGGGRLRWGHYEMMRLTIGRKMNVNTMFATWRVPAPWQPITKKGQGQRM 141

Query: 137 GGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKE 196
           GGGKG+IDHYVTP+K GR+I+E+ GKC + EV  +L+  A+++PF+    ++++L E + 
Sbjct: 142 GGGKGAIDHYVTPIKAGRVIVEIAGKCEFVEVKQFLQQVANQLPFQATVVSQEMLDEQRV 201

Query: 197 KEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYF 239
            EE + R N NP+T +Y+I+NN+  C +W+S  VD+K+FGK+ 
Sbjct: 202 AEEEQTRQNENPFTMKYVIQNNLSGCHRWLSP-VDHKWFGKHL 243

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3256104|emb|CAA15945.1| EG:63B12.2 [Drosophila melanogaster]

 Score =  242 bits (618), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 106/223 (47%), Positives = 155/223 (69%), Gaps = 1/223 (0%)

Query: 17  IVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHN 76
           IV TAGLK    P  Y ++  PERP+L+ +++ P    N + P+  KRL  +RGPE +HN
Sbjct: 33  IVNTAGLKYFAPPIKYQNVEQPERPKLRVIERQPQLPPNIRPPKMQKRLRYMRGPEMVHN 92

Query: 77  YLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRM 136
            L+HKQY +VA  GGR+ + H+E +R  + RK++V  MFA WRV  PW P+TKKG G RM
Sbjct: 93  TLLHKQYAIVATGGGRLRWGHYEMMRLTIGRKMNVNTMFATWRVPAPWQPITKKGQGQRM 152

Query: 137 GGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKE 196
           GGGKG+IDHYVTP+K GR+I+E+ GKC + EV  +L+  A+++PF+    ++++L E + 
Sbjct: 153 GGGKGAIDHYVTPIKAGRVIVEIAGKCEFVEVKQFLQQVANQLPFQATVVSQEMLDEQRV 212

Query: 197 KEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYF 239
            EE + R N NP+T +Y+I+NN+  C +W+S  VD+K+FGK+ 
Sbjct: 213 AEEEQTRQNENPFTMKYVIQNNLSGCHRWLSP-VDHKWFGKHL 254

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195347751|ref|XP_002040415.1| GM19177 [Drosophila sechellia] gi|194121843|gb|EDW43886.1| GM19177 [Drosophila sechellia]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 106/222 (47%), Positives = 154/222 (69%), Gaps = 1/222 (0%)

Query: 18  VCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNY 77
           V TAGLK    P  Y ++  PERP+L+ V++ P    N + P+  KRL  +RGPE +HN 
Sbjct: 23  VNTAGLKYFAPPIKYQNVEQPERPKLRVVERQPQLPPNIRPPKMQKRLRYMRGPEMVHNT 82

Query: 78  LIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMG 137
           L+HKQY +VA  GGR+ + H+E +R  + RK++V  MFA WRV  PW P+TKKG G RMG
Sbjct: 83  LLHKQYAIVATGGGRLRWGHYEMMRLTIGRKMNVNTMFATWRVPAPWQPITKKGQGQRMG 142

Query: 138 GGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKEK 197
           GGKG+IDHYVTP+K GR+I+E+ GKC + EV  +L+  A+++PF+    ++++L E +  
Sbjct: 143 GGKGAIDHYVTPIKAGRVIVEIAGKCEFVEVKQFLQQVANQLPFQATVVSQEMLDEQRVA 202

Query: 198 EEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYF 239
           EE + R N NP+T +Y+I+NN+  C +W+S  VD+K+FGK+ 
Sbjct: 203 EEEQDRQNENPFTMKYVIQNNLSGCHRWLSP-VDHKWFGKHL 243

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194912731|ref|XP_001982564.1| GG12889 [Drosophila erecta] gi|190648240|gb|EDV45533.1| GG12889 [Drosophila erecta]

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 106/223 (47%), Positives = 154/223 (69%), Gaps = 1/223 (0%)

Query: 17  IVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHN 76
           IV TAGLK    P  Y ++  PERP+L+ +++ P    N + P+  KRL  +RGPE +HN
Sbjct: 22  IVNTAGLKYFAPPIKYKNVEQPERPKLRIMERQPQLPPNIRPPKMQKRLRYMRGPEMVHN 81

Query: 77  YLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRM 136
            L+HKQY +VA  GGR+ + H+E +R  + RK++V  MFA WR+  PW P+TKKG G RM
Sbjct: 82  TLLHKQYAIVATGGGRLRWGHYEMMRLTIGRKMNVNTMFATWRIPAPWQPITKKGQGQRM 141

Query: 137 GGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILREMKE 196
           GGGKG+IDHYVTP+K GR+I+E+ GKC + EV  +L+  A+++PF+    ++++L E   
Sbjct: 142 GGGKGAIDHYVTPIKAGRVIVEIAGKCEFVEVKRFLQQVANQLPFQATVVSQEMLDEQIA 201

Query: 197 KEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYF 239
            EE  AR N NP+T +Y+I+NN+  C +W+S  VD+K+FGK+ 
Sbjct: 202 AEEEHARQNENPFTMKYVIQNNLNGCHRWLSP-VDHKWFGKHL 243

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
FB|FBgn0023519	254	mRpL16 "mitochondrial ribosoma	0.920	0.870	0.414	2.8e-50
UNIPROTKB|H9KZA7	238	MRPL16 "Uncharacterized protei	0.925	0.932	0.384	4.2e-40
UNIPROTKB|J9NSP6	274	LOC100855841 "Uncharacterized	0.966	0.846	0.341	4.4e-36
UNIPROTKB|H9GWA5	252	LOC100855841 "Uncharacterized	0.9	0.857	0.35	9.2e-36
UNIPROTKB|J9NVJ0	251	LOC100855464 "Uncharacterized	0.9	0.860	0.35	9.2e-36
UNIPROTKB|F1RI89	251	MRPL16 "Uncharacterized protei	0.904	0.864	0.352	9.2e-36
UNIPROTKB|Q9NX20	251	MRPL16 "39S ribosomal protein	0.904	0.864	0.343	1.5e-35
MGI|MGI:2137219	251	Mrpl16 "mitochondrial ribosoma	0.904	0.864	0.352	1.1e-34
RGD|735195	251	Mrpl16 "mitochondrial ribosoma	0.904	0.864	0.357	2.2e-34
UNIPROTKB|Q3T0J3	251	MRPL16 "39S ribosomal protein	0.9	0.860	0.35	5.8e-34

FB|FBgn0023519 mRpL16 "mitochondrial ribosomal protein L16" [Drosophila melanogaster (taxid:7227)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 92/222 (41%), Positives = 139/222 (62%)

Query:    17 IVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHN 76
             IV TAGLK    P  Y ++  PERP+L+ +++ P    N + P+  KRL  +RGPE +HN
Sbjct:    33 IVNTAGLKYFAPPIKYQNVEQPERPKLRVIERQPQLPPNIRPPKMQKRLRYMRGPEMVHN 92

Query:    77 YLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTXXXXXXXX 136
              L+HKQY +VA  GGR+ + H+E +R  + RK++V  MFA WRV  PW P+T        
Sbjct:    93 TLLHKQYAIVATGGGRLRWGHYEMMRLTIGRKMNVNTMFATWRVPAPWQPITKKGQGQRM 152

Query:   137 XXXXXSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILXXXXX 196
                  +IDHYVTP+K GR+I+E+ GKC + EV  +L+  A+++PF+    ++++L     
Sbjct:   153 GGGKGAIDHYVTPIKAGRVIVEIAGKCEFVEVKQFLQQVANQLPFQATVVSQEMLDEQRV 212

Query:   197 XXXXXARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKY 238
                   R N NP+T +Y+I+NN+  C +W+S  VD+K+FGK+
Sbjct:   213 AEEEQTRQNENPFTMKYVIQNNLSGCHRWLSP-VDHKWFGKH 253

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0019843 "rRNA binding" evidence=IEA

UNIPROTKB|H9KZA7 MRPL16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 87/226 (38%), Positives = 130/226 (57%)

Query:    15 GQIVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEI 74
             G  V  AGLK    PP+Y  I +PERP+LKF++KVP+     + PR  +  D+ RGP ++
Sbjct:     9 GSAVPRAGLKKFVLPPDYSGITLPERPKLKFMEKVPSVPKARREPRQLR--DI-RGPSQV 65

Query:    75 HNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTXXXXXX 134
                    QYG++AL GG +++ H E IR  + R +D K MFA+WRV  P+ P+T      
Sbjct:    66 ATNFTQGQYGILALGGGYLHWGHLEMIRLTIGRCMDPKNMFAIWRVPAPYKPLTKKSLGH 125

Query:   135 XXXXXXXSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILXXX 194
                     ID YVT VK+GR+++E+GG+C +EEV P+L   A K+PF  +  +   L   
Sbjct:   126 RMGGGKGPIDRYVTAVKSGRLVVELGGRCEFEEVKPFLTQVAHKLPFPAVAVSRQSLQQM 185

Query:   195 XXXXXXXARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
                      +N NP+TFE +I +N+   R+++S + D K  G+Y+G
Sbjct:   186 REEEEEKRVNNQNPWTFERVITSNMLGMRRYLSPY-DLKLKGRYWG 230

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|J9NSP6 LOC100855841 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 82/240 (34%), Positives = 130/240 (54%)

Query:     1 MSLRFPQKANRRPIGQIVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPR 60
             +SL FP      P  +    AGLK +   P ++ + +PE+P+L+FV++VP      K  R
Sbjct:    35 VSLPFPLGPRAAPPAR----AGLKTLLPVPTFEDVSIPEKPKLRFVERVPLV---PKVRR 87

Query:    61 TTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRV 120
               K L  +RGP           + ++AL GG +++ HFE +R  + R +D K MFA+WRV
Sbjct:    88 EPKNLSDIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFALWRV 147

Query:   121 DPPWLPVTXXXXXXXXXXXXXSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMP 180
               P+ P+T             +IDHYVTPVK GR+I+E+GG+C ++EV  +L   A K+P
Sbjct:   148 PAPFKPITRKGVGQRMGGGKGAIDHYVTPVKAGRLIVELGGRCEFKEVQGFLDQVAHKLP 207

Query:   181 FKCMPCNEDILXXXXXXXXXXARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
             F     + + L           ++N NP+TFE ++  N+   R+++S + D    G+Y+G
Sbjct:   208 FTAKAVSRETLEKMRRDQEEREQNNQNPWTFERIVTANMLGIRKYLSPY-DLTQKGRYWG 266

GO:0005840 "ribosome" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|H9GWA5 LOC100855841 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 77/220 (35%), Positives = 123/220 (55%)

Query:    21 AGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIH 80
             AGLK +   P ++ + +PE+P+L+FV++VP      K  R  K L  +RGP         
Sbjct:    29 AGLKTLLPVPTFEDVSIPEKPKLRFVERVPLV---PKVRREPKNLSDIRGPSTEATEFTE 85

Query:    81 KQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTXXXXXXXXXXXX 140
               + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+ P+T            
Sbjct:    86 GNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFALWRVPAPFKPITRKGVGQRMGGGK 145

Query:   141 XSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILXXXXXXXXX 200
              +IDHYVTPVK GR+I+E+GG+C ++EV  +L   A K+PF     + + L         
Sbjct:   146 GAIDHYVTPVKAGRLIVELGGRCEFKEVQGFLDQVAHKLPFTAKAVSRETLEKMRRDQEE 205

Query:   201 XARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
               ++N NP+TFE ++  N+   R+++S + D    G+Y+G
Sbjct:   206 REQNNQNPWTFERIVTANMLGIRKYLSPY-DLTQKGRYWG 244

GO:0005840 "ribosome" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|J9NVJ0 LOC100855464 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 77/220 (35%), Positives = 123/220 (55%)

Query:    21 AGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIH 80
             AGLK +   P ++ + +PE+P+L+FV++VP      K  R  K L  +RGP         
Sbjct:    28 AGLKTLLPVPTFEDVSIPEKPKLRFVERVPLV---PKVRREPKNLSDIRGPSTEATEFTE 84

Query:    81 KQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTXXXXXXXXXXXX 140
               + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+ P+T            
Sbjct:    85 GNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFALWRVPAPFKPITRKGVGQRMGGGK 144

Query:   141 XSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILXXXXXXXXX 200
              +IDHYVTPVK GR+I+E+GG+C ++EV  +L   A K+PF     + + L         
Sbjct:   145 GAIDHYVTPVKAGRLIVELGGRCEFKEVQGFLDQVAHKLPFTAKAVSRETLEKMRRDQEE 204

Query:   201 XARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
               ++N NP+TFE ++  N+   R+++S + D    G+Y+G
Sbjct:   205 REQNNQNPWTFERIVTANMLGIRKYLSPY-DLTQKGRYWG 243

GO:0005840 "ribosome" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1RI89 MRPL16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 78/221 (35%), Positives = 123/221 (55%)

Query:    20 TAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLI 79
             TAG K +   P ++ + +PE+P+L+FV++VP      K  R  K L  +RGP        
Sbjct:    27 TAGFKTLLPVPTFEDVAIPEKPKLRFVERVPLV---PKVRRERKNLSDIRGPSTEATEFT 83

Query:    80 HKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTXXXXXXXXXXX 139
               ++ ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+ P+T           
Sbjct:    84 EGRFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFALWRVPAPFKPITRKGMGQRMGGG 143

Query:   140 XXSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILXXXXXXXX 199
               +IDHYVTPVK GR+I+E+GG+C ++EV  +L   A K+PF     + + L        
Sbjct:   144 KGAIDHYVTPVKAGRLIVEMGGRCEFKEVQGFLDLVAHKLPFPAKAVSRETLEKMRKDQE 203

Query:   200 XXARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
                R+N NP+TFE +   N+   R+ +S + D  + G+Y+G
Sbjct:   204 ERERNNQNPWTFERIATANMLGIRKVLSPY-DLTHKGRYWG 243

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q9NX20 MRPL16 "39S ribosomal protein L16, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 76/221 (34%), Positives = 122/221 (55%)

Query:    20 TAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLI 79
             +AG+K +   P+++ + +PE+P+L+F+++ P      K  R  K L  +RGP        
Sbjct:    27 SAGVKTLLPVPSFEDVSIPEKPKLRFIERAPLV---PKVRREPKNLSDIRGPSTEATEFT 83

Query:    80 HKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTXXXXXXXXXXX 139
                + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+ P+T           
Sbjct:    84 EGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGG 143

Query:   140 XXSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILXXXXXXXX 199
               +IDHYVTPVK GR+++E+GG+C +EEV  +L   A K+PF     +   L        
Sbjct:   144 KGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAKAVSRGTLEKMRKDQE 203

Query:   200 XXARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
                R+N NP+TFE +   N+   R+ +S + D  + GKY+G
Sbjct:   204 ERERNNQNPWTFERIATANMLGIRKVLSPY-DLTHKGKYWG 243

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:2137219 Mrpl16 "mitochondrial ribosomal protein L16" [Mus musculus (taxid:10090)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 78/221 (35%), Positives = 121/221 (54%)

Query:    20 TAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLI 79
             +AGLK +   P ++++ +PER +LKFV++VP      K  R  K L  +RGP        
Sbjct:    27 SAGLKTLLPVPTFENVSIPERSKLKFVERVPLV---PKVRREPKNLKDIRGPSTEATDFT 83

Query:    80 HKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTXXXXXXXXXXX 139
                + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+ P+T           
Sbjct:    84 EGNFAILALGGGYLHWGHFEMMRLTINRFMDPKNMFAIWRVPAPFKPITRKGVGQRMGGG 143

Query:   140 XXSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILXXXXXXXX 199
               +IDHYVTPVKTG +++E+GG+C +EEV   L   A K+PF     +   L        
Sbjct:   144 KGAIDHYVTPVKTGCLVVEMGGRCEFEEVKGILNQVAHKLPFPAKAVSRKTLERMHQNQR 203

Query:   200 XXARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
                 +N NP+TFE++   N+   R+++S + D    G+Y+G
Sbjct:   204 ERELNNQNPWTFEHIATANMFGIRKFLSPY-DLTQKGRYWG 243

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0019843 "rRNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|735195 Mrpl16 "mitochondrial ribosomal protein L16" [Rattus norvegicus (taxid:10116)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 79/221 (35%), Positives = 120/221 (54%)

Query:    20 TAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLI 79
             +AGLK +   P ++++ +PER +LKFV++VP      K  R  K L  +RGP        
Sbjct:    27 SAGLKTLLPVPTFENVSIPERSKLKFVERVPLV---PKVRREPKNLKDIRGPSAEATDFT 83

Query:    80 HKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTXXXXXXXXXXX 139
                + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+ P+T           
Sbjct:    84 EGNFAILALGGGYLHWGHFEMMRLTINRFMDPKNMFAIWRVPAPFKPITRKGVGQRMGGG 143

Query:   140 XXSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILXXXXXXXX 199
               +IDHYVTPVKTG +I+E+GG+C +EEV   L   A K+PF     +   L        
Sbjct:   144 KGAIDHYVTPVKTGCLIVEMGGRCEFEEVKRVLNQVAHKLPFPAKAVSRKTLEKMHQNQK 203

Query:   200 XXARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
                 +N NP+TFE +   N+   R+++S + D    G+Y+G
Sbjct:   204 ERELNNQNPWTFERIATANMFGIRKFLSPY-DLTQKGRYWG 243

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

UNIPROTKB|Q3T0J3 MRPL16 "39S ribosomal protein L16, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 77/220 (35%), Positives = 119/220 (54%)

Query:    21 AGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIH 80
             AGLK +   P ++ + +PE+P+L+FV++ P      K  R  K L  +RGP         
Sbjct:    28 AGLKTLLPVPTFEDVSIPEKPKLRFVERAPLV---PKVRREPKNLRDIRGPSTEATEFTE 84

Query:    81 KQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTXXXXXXXXXXXX 140
               + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+  +T            
Sbjct:    85 GNFAILALGGGYLHWGHFEMMRLTINRFMDPKNMFALWRVPAPFKAITRKGMGQRMGGGK 144

Query:   141 XSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILXXXXXXXXX 200
              +IDHYVTPVK GR+I+EVGG+C ++EV   L   A K+PF     + + L         
Sbjct:   145 GAIDHYVTPVKAGRLIVEVGGRCEFQEVQGILNQVAHKLPFPAKAVSRETLEKIQKDQEE 204

Query:   201 XARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFGKYFG 240
               R+N NP+TFE +   N+   R+ +S + D  + G+Y+G
Sbjct:   205 RERNNQNPWTFERIATANMLGIRKVLSPY-DLTHRGRYWG 243

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5M818	RM16_RAT	No assigned EC number	0.3982	0.925	0.8844	yes	N/A
Q99N93	RM16_MOUSE	No assigned EC number	0.4009	0.9083	0.8685	yes	N/A
Q3T0J3	RM16_BOVIN	No assigned EC number	0.3963	0.9083	0.8685	yes	N/A
Q5R7L3	RM16_PONAB	No assigned EC number	0.3918	0.9083	0.8685	yes	N/A
Q9NX20	RM16_HUMAN	No assigned EC number	0.3918	0.9083	0.8685	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	240
cd01433	112	cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L	4e-35
pfam00252	129	pfam00252, Ribosomal_L16, Ribosomal protein L16p/L	5e-34
PRK09203	138	PRK09203, rplP, 50S ribosomal protein L16; Reviewe	1e-21
TIGR01164	126	TIGR01164, rplP_bact, ribosomal protein L16, bacte	6e-18
COG0197	146	COG0197, RplP, Ribosomal protein L16/L10E [Transla	4e-17
CHL00044	135	CHL00044, rpl16, ribosomal protein L16	2e-10

>gnl|CDD|238714 cd01433, Ribosomal_L16_L10e, Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts

 Score =  120 bits (304), Expect = 4e-35
 Identities = 46/108 (42%), Positives = 56/108 (51%), Gaps = 1/108 (0%)

Query: 76  NYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSR 135
           N L   +YGLVAL  GR+     E  R A+ R L  KK   +W    P  PVTKK L +R
Sbjct: 3   NKLFFGEYGLVALEPGRITAEQLEAARIAINRYL-KKKGGKLWIRVFPDHPVTKKPLETR 61

Query: 136 MGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
           MG GKG  + +V  VK G+I+ EV G    E     LR  A K+P K 
Sbjct: 62  MGKGKGKPEGWVARVKPGQILFEVRGVPEEEVAKEALRRAAKKLPIKT 109

Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus. Length = 112

>gnl|CDD|215820 pfam00252, Ribosomal_L16, Ribosomal protein L16p/L10e

 Score =  118 bits (299), Expect = 5e-34
 Identities = 49/124 (39%), Positives = 62/124 (50%), Gaps = 3/124 (2%)

Query: 60  RTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWR 119
           R  ++  L  G     N L    YGL AL  GR+  R  E  R A+ R L  K+   +W 
Sbjct: 7   RKYQKGRLEYGGAVPGNKLAFGDYGLKALEPGRITARQIEAARIAINRYL--KRGGKLWI 64

Query: 120 VDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKM 179
              P  PVTKK   +RMG GKG  + +V  VK G+I+ E+GG  S E     LR  ASK+
Sbjct: 65  RVFPDKPVTKKPAETRMGKGKGKPEGWVARVKPGQILFEIGG-VSEEVAKEALRRAASKL 123

Query: 180 PFKC 183
           P K 
Sbjct: 124 PIKT 127

Length = 129

>gnl|CDD|236411 PRK09203, rplP, 50S ribosomal protein L16; Reviewed

 Score = 86.7 bits (216), Expect = 1e-21
 Identities = 45/109 (41%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 76  NYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVW-RVDPPWLPVTKKGLGS 134
           N +   ++GL AL  G +  R  E  R AM R   +K+   VW R+ P   PVTKK    
Sbjct: 25  NTVAFGEFGLKALEPGWITARQIEAARIAMTRH--IKRGGKVWIRIFPD-KPVTKKPAEV 81

Query: 135 RMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
           RMG GKGS +++V  VK GRI+ E+ G  S E     LR  A+K+P K 
Sbjct: 82  RMGKGKGSPEYWVAVVKPGRILFEIAG-VSEELAREALRLAAAKLPIKT 129

Length = 138

>gnl|CDD|211627 TIGR01164, rplP_bact, ribosomal protein L16, bacterial/organelle

 Score = 76.6 bits (189), Expect = 6e-18
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 3/113 (2%)

Query: 68  LRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPV 127
           ++G  +  N +   +YGL AL  G +  R  E  R AM R   VK+   +W    P  P 
Sbjct: 16  MKGKAKRGNTVAFGEYGLQALEPGWITARQIEAARVAMTRY--VKRGGKLWIRIFPDKPY 73

Query: 128 TKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMP 180
           TKK L +RMG GKG+ +++V  VK G+I+ E+ G    E      R  ASK+P
Sbjct: 74  TKKPLETRMGKGKGNPEYWVAVVKPGKILFEIAG-VPEEVAREAFRLAASKLP 125

This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 126

>gnl|CDD|223275 COG0197, RplP, Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]

 Score = 74.9 bits (185), Expect = 4e-17
 Identities = 44/150 (29%), Positives = 64/150 (42%), Gaps = 18/150 (12%)

Query: 34  HIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRM 93
           H++ P+R + +   K                     G     N +   +YGLVAL  G++
Sbjct: 1   HMLQPKRTKYRKQHKGRG----------PGITIAKGG-----NKVFFGEYGLVALEPGQI 45

Query: 94  NYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTG 153
             R  E  R A  R L  K+   +W    P  P+T+K    RMG GKG  + +   VK G
Sbjct: 46  TARQIEAARIAANRYL--KRGGGLWIRVFPDKPLTEKPGEDRMGKGKGKPEGWAARVKPG 103

Query: 154 RIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
           R++ E+ G    E     LR  A+K+P K 
Sbjct: 104 RVLFEIAGV-PEELAREALRRAAAKLPVKT 132

Length = 146

>gnl|CDD|176985 CHL00044, rpl16, ribosomal protein L16

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 76  NYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVW-RVDPPWLPVTKKGLGS 134
           N +   +Y L AL    +  R  E  R A+ R    ++   +W R+ P   PVT +   +
Sbjct: 25  NRICFGRYALQALEPAWITSRQIEAGRRAITRY--ARRGGKIWIRIFPD-KPVTMRPAET 81

Query: 135 RMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
           RMG GKGS +++V  VK GRI+ E+GG  S       ++  A KMP K 
Sbjct: 82  RMGSGKGSPEYWVAVVKPGRILYEMGG-VSETIARAAIKIAAYKMPIKT 129

Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG3422|consensus	221		100.0
CHL00044	135	rpl16 ribosomal protein L16	100.0
PRK09203	138	rplP 50S ribosomal protein L16; Reviewed	100.0
TIGR01164	126	rplP_bact ribosomal protein L16, bacterial/organel	100.0
PF00252	133	Ribosomal_L16: Ribosomal protein L16p/L10e; InterP	100.0
COG0197	146	RplP Ribosomal protein L16/L10E [Translation, ribo	100.0
cd01433	112	Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an e	100.0
PRK04199	172	rpl10e 50S ribosomal protein L10e; Reviewed	100.0
TIGR00279	172	L10e ribosomal protein L10.e. L10.e is distantly r	100.0
PTZ00173	213	60S ribosomal protein L10; Provisional	100.0
KOG0857|consensus	212		98.32

>KOG3422|consensus

Probab=100.00  E-value=3.5e-63  Score=431.79  Aligned_cols=200  Identities=37%  Similarity=0.599  Sum_probs=190.8

Q ss_pred             ccccccccccCCCCCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcc-cCcccCccEEEEEeEEEEEeeCcccch
Q psy6080          17 IVCTAGLKNIKKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLL-RGPEEIHNYLIHKQYGLVALSGGRMNY   95 (240)
Q Consensus        17 ~~~~~g~k~~~~~~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~-rG~~~~~~~L~~G~yGL~ale~G~It~   95 (240)
                      ...++|++.|-|++.|.|+.               .|+++|++|.||+  ++ +|+|.+||+|.||+|||+++++|+|++
T Consensus        21 ~~~~g~~k~~~p~~~f~d~~---------------~P~r~k~rk~~rg--r~~rG~s~~gt~L~~g~Ygl~a~~~g~l~~   83 (221)
T KOG3422|consen   21 FPPNGGLKLFMPAERFGDVY---------------APERTKYRKIQRG--RVPRGGSERGTELIFGRYGLRAKSGGILDS   83 (221)
T ss_pred             ccCCCccceeeccccccccc---------------cccchhhhHhhcc--ccccCCccccceeeechhhheeccCceeeH
Confidence            44678999999999999999               5666777777776  55 899999999999999999999999999


Q ss_pred             hhHHHHHHHHhcccccccceEEEEEcCCCCceecCCCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHc
Q psy6080          96 RHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSC  175 (240)
Q Consensus        96 ~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~a  175 (240)
                      .|+|++|.++.++++..++|++|+|++||.|||.|++|+|||+|||+||||||||++|+||||++|++++++|++||.+|
T Consensus        84 ~~~e~~r~~~~r~~~~~~~~~iWrr~~p~~Pvt~K~~etRMG~GKGa~d~wva~V~~GrIl~EmgG~~~~~~Ar~al~~a  163 (221)
T KOG3422|consen   84 AQFEAMRLTRARKMNPRNNGKIWRRPAPNLPVTVKGNETRMGGGKGAIDHWVARVKAGRILFEMGGDVEEEEARQALLQA  163 (221)
T ss_pred             HHHHHHHHHHHHhcCcccCccEEEEecCCCceeecCcceeccCCCCCcceeEEEecCCcEEEEeCCcccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcceEEEecchhHHHHHHHHHHHhccCCcccHHHHHHhhhcccccccCccccccccc
Q psy6080         176 ASKMPFKCMPCNEDILREMKEKEEREARDNINPYTFEYMIKNNIGNCRQWISTHVDYKYFG  236 (240)
Q Consensus       176 a~KLP~k~kiV~~~~l~~~~~~~~~~~~~n~n~~t~~~~~~~nm~~~~~~~s~~~d~~~~~  236 (240)
                      |+|||++++|||.++|++++..+++...+|+|||||++||++||+||++|||| ||  |+|
T Consensus       164 a~klp~~~efVs~~~l~~~r~~~ee~~~~n~n~~~~~~v~~~n~~~~~~~Ls~-~d--~~g  221 (221)
T KOG3422|consen  164 AHKLPFKYEFVSEEMLARRRKKAEEETRMNKNKFNYGEVIKYNMQGCNSWLSS-YD--WKG  221 (221)
T ss_pred             HhcCCccEEEeeHhhHHHHhhhhhhhcccCCCCccHHHHhhhhHHHHhhhcCh-hh--cCC
Confidence            99999999999999999999999999999999999999999999999999999 99  765

>CHL00044 rpl16 ribosomal protein L16

Probab=100.00  E-value=3e-47  Score=314.28  Aligned_cols=133  Identities=29%  Similarity=0.346  Sum_probs=128.1

Q ss_pred             CCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCC
Q psy6080          52 FIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKG  131 (240)
Q Consensus        52 ~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~  131 (240)
                      .|+++||+|+||+  +++|.+.++++|.||+|||+|+|+|+|+++||||||++|+|+|  ++++++|||+|||+|||+||
T Consensus         3 ~Pk~~k~~K~~k~--~~~g~~~~~~~l~~G~~GL~a~e~~~i~~~qiEaaR~~i~r~l--kk~~~i~irv~P~~pvtkkp   78 (135)
T CHL00044          3 SPKRTKFRKQHRG--RMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAITRYA--RRGGKIWIRIFPDKPVTMRP   78 (135)
T ss_pred             CCCccccccccCC--CCCCcCCCCCeEeeccEEEEEccCcEECHHHHHHHHHHHHHhh--hcCcEEEEEECCCcceEeCc
Confidence            5999999999997  7899999999999999999999999999999999999999999  46899999999999999999


Q ss_pred             CcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecc
Q psy6080         132 LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNED  189 (240)
Q Consensus       132 ~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~  189 (240)
                      .|+|||+|||+||||||+|++|+||||++| ++.++|++||++|++|||++|+||+++
T Consensus        79 ~e~RMGkGKG~~~~~va~V~~G~ilfEi~g-~~~~~ak~al~~a~~KLP~k~~~v~~~  135 (135)
T CHL00044         79 AETRMGSGKGSPEYWVAVVKPGRILYEMGG-VSETIARAAIKIAAYKMPIKTQFIISE  135 (135)
T ss_pred             ccccccCCCCCccEEEEEECCCcEEEEEeC-CCHHHHHHHHHHHhhcCCCcEEEEecC
Confidence            999999999999999999999999999999 678999999999999999999999754

>PRK09203 rplP 50S ribosomal protein L16; Reviewed

Probab=100.00  E-value=6.2e-46  Score=307.37  Aligned_cols=132  Identities=36%  Similarity=0.432  Sum_probs=127.9

Q ss_pred             CCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCC
Q psy6080          52 FIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKG  131 (240)
Q Consensus        52 ~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~  131 (240)
                      .|+++||+|+||+  +++|.+..+++|.||+|||+|+|+|+|+++||||||++|+|+|+  +.+++|+|+|||+|||+||
T Consensus         3 ~Pk~~k~~K~~kg--r~~g~~~~~~~l~~G~~gL~a~e~g~i~~~qlEaaR~~i~r~Lk--k~g~~~irv~P~~~vt~k~   78 (138)
T PRK09203          3 QPKRTKYRKQHKG--RNRGKAKRGNTVAFGEFGLKALEPGWITARQIEAARIAMTRHIK--RGGKVWIRIFPDKPVTKKP   78 (138)
T ss_pred             CCCccccccCCCC--CCCCCCCCCCeEeeccEEEEECcCCeEcHHHHHHHHHHHHHHhh--cCceEEEEeCCCccEEcCh
Confidence            5999999999997  78999999999999999999999999999999999999999994  5689999999999999999


Q ss_pred             CcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080         132 LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE  188 (240)
Q Consensus       132 ~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~  188 (240)
                      +++|||+|||+||||||+|++|+||||++| ++++.|++||++|++|||++|+||++
T Consensus        79 ~~~RMGkGKG~~~~~varVk~G~iifEi~~-~~~~~a~~al~~a~~KLP~~~kii~~  134 (138)
T PRK09203         79 AEVRMGKGKGSPEYWVAVVKPGRILFEIAG-VSEELAREALRLAAAKLPIKTKFVKR  134 (138)
T ss_pred             hhccccCCCCCCcEEEEEECCCCEEEEEeC-CCHHHHHHHHHHHhccCCCcEEEEEe
Confidence            999999999999999999999999999999 89999999999999999999999986

>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle

Probab=100.00  E-value=1.6e-44  Score=294.84  Aligned_cols=125  Identities=33%  Similarity=0.454  Sum_probs=121.5

Q ss_pred             CCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCC
Q psy6080          52 FIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKG  131 (240)
Q Consensus        52 ~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~  131 (240)
                      .|+++||+|+||+  +++|.+..+++|.||+|||+|+|+|+|+++||||||++|+|+|+  +++++||++|||+|||+||
T Consensus         2 ~Pk~~k~~K~~k~--~~~g~~~~~~~l~~G~~gL~a~e~~~i~~~qlEaaR~~i~r~l~--~~~~~~irv~P~~~vt~k~   77 (126)
T TIGR01164         2 SPKRTKYRKQHRG--RMKGKAKRGNTVAFGEYGLQALEPGWITARQIEAARVAMTRYVK--RGGKLWIRIFPDKPYTKKP   77 (126)
T ss_pred             CCCccccccccCC--CCCCcCCCCCeeeeccEeeEECcCCeEcHHHHHHHHHHHHHHHh--hCceEEEEECCCcCEEeCc
Confidence            5899999999997  78999999999999999999999999999999999999999994  6899999999999999999


Q ss_pred             CcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCc
Q psy6080         132 LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPF  181 (240)
Q Consensus       132 ~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~  181 (240)
                      +++|||+|||+|+||||+|++|+||||+.| +++++|++||++|++|||+
T Consensus        78 ~~~RMGkGKG~~~~~varV~~G~ilfEi~~-~~~~~a~~al~~a~~KLP~  126 (126)
T TIGR01164        78 LETRMGKGKGNPEYWVAVVKPGKILFEIAG-VPEEVAREAFRLAASKLPI  126 (126)
T ss_pred             hhccccCCCCCCCEEEEEECCCCEEEEEeC-CCHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999 8999999999999999996

This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10

>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1e-44  Score=297.69  Aligned_cols=132  Identities=39%  Similarity=0.537  Sum_probs=123.2

Q ss_pred             CCCCCCccccCCCCcc-cCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCC
Q psy6080          53 IYNHKTPRTTKRLDLL-RGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKG  131 (240)
Q Consensus        53 pk~~K~~K~~K~l~~~-rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~  131 (240)
                      |+++||+|+|| ..++ .|.+..+++|.||+|||+|+++|+|+++|||+||++|+|+|+  +++++|+++|||+|||+||
T Consensus         1 Pk~~kyrk~~k-~~r~~~~~~~~~~~l~~g~~gl~a~~~g~l~~~qlEa~R~~i~r~lk--k~~~~~i~v~p~~~vTkk~   77 (133)
T PF00252_consen    1 PKRTKYRKYQK-YPRINYGKSKPGNKLKFGDYGLKALEPGRLTSNQLEAARIAINRYLK--KNGKLWIRVFPHHPVTKKP   77 (133)
T ss_dssp             TSCCSTSSSSS--SSTTTSTTSSCSSSSSSSEEEEESS-EEEEHHHHHHHHHHHHHHHH--HTSTEEESSSCEEEEEE-S
T ss_pred             CCCCccCCCCC-CCCCCcccccCccEEEeeeeeEEEeeeeeechhhhHHHHHHHHHHhh--hheeEEEEeeeeeeeeeeh
Confidence            78999999999 5577 799999999999999999999999999999999999999995  4788999999999999999


Q ss_pred             CcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEe
Q psy6080         132 LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN  187 (240)
Q Consensus       132 ~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~  187 (240)
                      +|+|||+|||+|+||||+|++|+||||++|++++++|++||++|++|||++|+||+
T Consensus        78 ~~~RMG~GKG~~~~~~a~V~~G~iifEi~~~v~~~~a~~alk~a~~KLP~~~~~v~  133 (133)
T PF00252_consen   78 LETRMGKGKGKIDHWVARVKPGQIIFEIGGKVNEEEAKEALKRAAKKLPIKTKFVS  133 (133)
T ss_dssp             SSSSSSSSSCEEEEEEEEESTTEEEEEEESGSCHHHHHHHHHHHHHTSSSCEEEE-
T ss_pred             hhhhhccCCCCccEEEEEECCCcEEEEECCcCCHHHHHHHHHHHHhhCCCCEEEeC
Confidence            99999999999999999999999999999878999999999999999999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a structural domain with an alpha/beta-hammerhead fold, where the beta-hammerhead motif is similar to that in barrel-sandwich hybrids. Domains of this structure can be found in ribosomal proteins L10e and L16. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2ZJR_J 1Y69_K 3DLL_J 2ZJQ_J 2ZJP_J 3PIO_J 3CF5_J 3PIP_J 2ZKR_h 3J11_O ....

>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.3e-42  Score=287.88  Aligned_cols=135  Identities=30%  Similarity=0.350  Sum_probs=125.1

Q ss_pred             CCCCCCCccccCCCCcccCc--ccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceec
Q psy6080          52 FIYNHKTPRTTKRLDLLRGP--EEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTK  129 (240)
Q Consensus        52 ~pk~~K~~K~~K~l~~~rG~--~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTk  129 (240)
                      .|+.+|+.|+|++  +..|.  +..+|.+.||+|||+|+|.+|||++||||||+++||+|+  +.+.+|||+|||+|+|+
T Consensus         4 ~Pk~tk~rk~~~g--~~~~~~~~~~G~~~~fg~~gL~a~e~~~It~~qiEAARia~~R~lk--r~g~~wIRvfP~~~~~~   79 (146)
T COG0197           4 QPKRTKYRKQHKG--RGPGITIAKGGNKVFFGEYGLVALEPGQITARQIEAARIAANRYLK--RGGGLWIRVFPDKPLTE   79 (146)
T ss_pred             CCCcceeecccCC--CCCCceeccCCccccceEEEEEEcccceecHHHHHHHHHHHHHHhh--hcCCEEEEEcCCceeee
Confidence            4778888888886  77777  888889999999999999999999999999999999994  56779999999999999


Q ss_pred             CCCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecchh
Q psy6080         130 KGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDIL  191 (240)
Q Consensus       130 K~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~~l  191 (240)
                      ||.++|||+|||++++|||+|++|++|||+.| ++++.|++||++|++|||++|++|+..+.
T Consensus        80 kp~e~Rmg~GkG~pegwaArVkpG~vlfei~g-~~e~~A~EAlr~Aa~KLP~~~~~v~~~~~  140 (146)
T COG0197          80 KPGEDRMGKGKGKPEGWAARVKPGRVLFEIAG-VPEELAREALRRAAAKLPVKTKFVIRIEK  140 (146)
T ss_pred             CCCcccccCCCCCccEEEEEecCCcEEEEEec-CcHHHHHHHHHHHhhcCCCceEEEEEEec
Confidence            99999999999999999999999999999999 67777999999999999999999988754

>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts

Probab=100.00  E-value=7.9e-39  Score=255.29  Aligned_cols=111  Identities=41%  Similarity=0.525  Sum_probs=104.5

Q ss_pred             ccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCCCcccCCCCCCcceEEEEEEeCCC
Q psy6080          75 HNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGR  154 (240)
Q Consensus        75 ~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~~gtRMGkGKG~i~~~varVk~G~  154 (240)
                      ++++.+|+|||+++|+|+|+++|||++|++|+|+|++. ++++|+++|||+|||+||.|+|||+|||+|+||||+|++|+
T Consensus         2 ~~~~~~g~~gL~a~e~~~i~~~~lEa~R~~i~r~l~k~-~~~~~ir~~p~~~vt~k~~~~rMGkGKG~~~~~~a~v~~G~   80 (112)
T cd01433           2 GNKLFFGEYGLVALEPGRITAEQLEAARIAINRYLKKK-GGKLWIRVFPDHPVTKKPLETRMGKGKGKPEGWVARVKPGQ   80 (112)
T ss_pred             CceeccceEEEEECcCCeECHHHHHHHHHHHHHHhhhc-CceEEEEecCCccEEECccccccCCCCCCccEEEEEECCCC
Confidence            56789999999999999999999999999999999642 59999999999999999999999999999999999999999


Q ss_pred             EEEEEeccCCHHHHHHHHHHccccCCcceEEE
Q psy6080         155 IIIEVGGKCSYEEVLPYLRSCASKMPFKCMPC  186 (240)
Q Consensus       155 iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV  186 (240)
                      +|||+.|..+++.|++||+++++|||++++||
T Consensus        81 iifEi~~~~~~~~~~~alk~a~~Klp~~~k~i  112 (112)
T cd01433          81 ILFEVRGVPEEEVAKEALRRAAKKLPIKTKIV  112 (112)
T ss_pred             EEEEEeCcCcHHHHHHHHHHhhccCCCcEEEC
Confidence            99999994338999999999999999999985

Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.

>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed

Probab=100.00  E-value=9e-38  Score=266.72  Aligned_cols=147  Identities=21%  Similarity=0.203  Sum_probs=130.7

Q ss_pred             CCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhccc
Q psy6080          30 PNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKL  109 (240)
Q Consensus        30 ~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L  109 (240)
                      .-|+++..|+|+|.+|+.++|. |+.++|-   .|  +..      .++. -+.+|+|+|.|+|+++||||||++++|+|
T Consensus         7 ~~Yr~~~~~~ytr~~yi~g~P~-~kI~~f~---~G--~~~------~~~~-~~~~L~a~E~~~I~~~qiEAaR~ai~r~l   73 (172)
T PRK04199          7 RCYRHISKPAYTRREYIGGVPG-PKIVKFD---MG--NLS------GDFP-VEVSLVVEEPCQIRHNALEAARIAANKYL   73 (172)
T ss_pred             hhhcccCCCCCchhcccCCCCC-CeEEEEe---cC--CcC------CCCC-EEEEEEEcccccccHHHHHHHHHHHHHHH
Confidence            4588899999999999999999 9999988   65  322      2233 56799999999999999999999999999


Q ss_pred             ccc---cceEEEEEcCCCCceecCCCcccCC-----CC----CCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHcc
Q psy6080         110 DVK---KMFAVWRVDPPWLPVTKKGLGSRMG-----GG----KGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCA  176 (240)
Q Consensus       110 ~kk---k~~~iwirv~P~~pvTkK~~gtRMG-----kG----KG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa  176 (240)
                      ++.   .+|++|||+|||+|||+||+++|||     +|    ||++++|||+|++|+||||+.|. .+++.|++||++|+
T Consensus        74 kk~~G~~~~k~wIrvfP~~~lt~kp~~~rmGAdRmg~GMr~akG~p~~wva~Vk~G~ilfei~~~~~~~~~akeAlr~a~  153 (172)
T PRK04199         74 TKTVGRSNYHLKIRVYPHHVLRENKMATGAGADRVSDGMRLAFGKPVGTAARVEKGQKIFTVRVNPEHLEAAKEALRRAA  153 (172)
T ss_pred             HhccCCcccEEEEEeCCCcceecChhHhhcchhhhccCcccCCCCccEEEEEECcCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            752   3569999999999999999999666     89    99999999999999999999973 58999999999999


Q ss_pred             ccCCcceEEEecc
Q psy6080         177 SKMPFKCMPCNED  189 (240)
Q Consensus       177 ~KLP~k~kiV~~~  189 (240)
                      +|||++|+||..+
T Consensus       154 ~KLP~k~kiv~~~  166 (172)
T PRK04199        154 MKLPTPCRIVVEK  166 (172)
T ss_pred             ccCCCcEEEEEec
Confidence            9999999999764

>TIGR00279 L10e ribosomal protein L10

Probab=100.00  E-value=8.9e-38  Score=266.65  Aligned_cols=146  Identities=18%  Similarity=0.134  Sum_probs=130.5

Q ss_pred             CCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccc
Q psy6080          31 NYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLD  110 (240)
Q Consensus        31 ~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~  110 (240)
                      -|+.+..|+|||.+|+.++|. |+...|-   .|  +.      ..++. -...|+|+|.|+||++||||||++++|+|+
T Consensus         8 ~Yr~~~~~~Ytr~~y~~g~P~-~kI~~f~---~G--~~------~~~fp-~~~~L~a~E~~~I~~~qiEAaR~a~~r~lk   74 (172)
T TIGR00279         8 CYRYQKNRPYTRSEYIKGVPG-SKIRIYD---MG--NK------SAEFP-VCVHLVAKEPEQIRHNALEAARIAANKYMT   74 (172)
T ss_pred             hhcccCCCCCchhhccCCCCC-CcEEEEE---CC--Cc------cCCCC-EEEEEEECccceecHHHHHHHHHHHHHHHH
Confidence            588899999999999999999 9988887   65  32      11233 567899999999999999999999999997


Q ss_pred             cc---cceEEEEEcCCCCceecCCCcccCCC---------CCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHccc
Q psy6080         111 VK---KMFAVWRVDPPWLPVTKKGLGSRMGG---------GKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCAS  177 (240)
Q Consensus       111 kk---k~~~iwirv~P~~pvTkK~~gtRMGk---------GKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa~  177 (240)
                      +.   .+|++|||+|||+|||+||+++|||+         |||++++|||+|++|+||||+.|. .+++.|++||++|++
T Consensus        75 k~~g~~~~k~wIRvfP~~~lt~kp~~trmGaDRlq~GMr~gkG~p~~wvArVk~Gqiifei~~~~~~~~~AkeAlr~A~~  154 (172)
T TIGR00279        75 RRAGRMGYHLKIRVYPHHILRENKMATGAGADRIQQGMRGAFGKPVGTAARVKIGQKIFSVWTKPSNFDVAKEALRRAAM  154 (172)
T ss_pred             hhcCccceEEEEEECCCCceecCchhhhcCchhhhcccccCCCCccEEEEEECcCCEEEEEEeecCCHHHHHHHHHHHhc
Confidence            52   35799999999999999999999996         999999999999999999999993 388999999999999


Q ss_pred             cCCcceEEEecc
Q psy6080         178 KMPFKCMPCNED  189 (240)
Q Consensus       178 KLP~k~kiV~~~  189 (240)
                      |||++|+||..+
T Consensus       155 KLP~~~kiv~~~  166 (172)
T TIGR00279       155 KFPVPCKIVIEK  166 (172)
T ss_pred             cCCCcEEEEEec
Confidence            999999999763

e. L10.e is distantly related to eubacterial ribosomal protein L16.

>PTZ00173 60S ribosomal protein L10; Provisional

Probab=100.00  E-value=2.9e-34  Score=251.53  Aligned_cols=151  Identities=16%  Similarity=0.149  Sum_probs=131.1

Q ss_pred             CCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhccc
Q psy6080          30 PNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKL  109 (240)
Q Consensus        30 ~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L  109 (240)
                      --|+.+..|+|||.+|+.+||. |+.+.|-   .|  +.+...   .++- -...|+++|.++||++||||||+++||+|
T Consensus         7 rcYr~~~~~pY~r~~y~~gvP~-~kI~~fd---~G--~~~a~~---~~fp-~~v~Lvs~E~~qIss~aLEAaRia~nr~l   76 (213)
T PTZ00173          7 RCYRYCKNKPYPKSRFCRGVPD-PKIRIYD---IG--RKKATV---DEFP-VCVHIVSDEYEQISSEALEAARISANKYM   76 (213)
T ss_pred             hhhhcccCCCCchhhccCCCCC-CcEEEEe---cC--CCcCCc---ccCC-eEEEEEEcccccccHHHHHHHHHHHHHhh
Confidence            3488899999999999999999 9998887   65  333211   1122 45689999999999999999999999999


Q ss_pred             c-c--ccceEEEEEcCCCCce------ecCC---CcccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHcc
Q psy6080         110 D-V--KKMFAVWRVDPPWLPV------TKKG---LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCA  176 (240)
Q Consensus       110 ~-k--kk~~~iwirv~P~~pv------TkK~---~gtRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa  176 (240)
                      . .  +.+|++|||+||||+|      |.+|   +++|||+|||++++|||+|++|+||||+.++ .+++.|++||++|+
T Consensus        77 ~K~~Gk~~fhl~IRv~P~hvlR~nKm~T~AgAdrlq~gMr~gfGkp~g~vArVk~Gqiifei~~~~~~~~~AkeALrrA~  156 (213)
T PTZ00173         77 VKRAGKDGFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPNGTCARVRIGQILLSIRTKEAYVPQAIEALRRAK  156 (213)
T ss_pred             hhhcCCccceEEEEEcCCcccccccccccccCchhhhhcccCCCCccEEEEEECcCCEEEEEecccCCHHHHHHHHHHhc
Confidence            3 3  4678899999999999      7734   8999999999999999999999999999995 89999999999999


Q ss_pred             ccCCcceEEEecch
Q psy6080         177 SKMPFKCMPCNEDI  190 (240)
Q Consensus       177 ~KLP~k~kiV~~~~  190 (240)
                      +|||++++||....
T Consensus       157 ~KlP~~~kIv~~~~  170 (213)
T PTZ00173        157 YKFPGRQKIVVSNK  170 (213)
T ss_pred             ccCCCeEEEEEecc
Confidence            99999999997754

>KOG0857|consensus

Probab=98.32  E-value=5.7e-07  Score=79.41  Aligned_cols=105  Identities=22%  Similarity=0.228  Sum_probs=88.1

Q ss_pred             EEEEeeCcccchhhHHHHHHHHhccccc---ccceEEEEEcCC-CCceecCC---------CcccCCCCCCcceEEEEEE
Q psy6080          84 GLVALSGGRMNYRHFETIRFAMMRKLDV---KKMFAVWRVDPP-WLPVTKKG---------LGSRMGGGKGSIDHYVTPV  150 (240)
Q Consensus        84 GL~ale~G~It~~qlEaaR~~InR~L~k---kk~~~iwirv~P-~~pvTkK~---------~gtRMGkGKG~i~~~varV  150 (240)
                      -++..+.-.|++.++||+|...++++.+   +..|.+-++++| .|+++-..         +.|-|-+..|++.+.||+|
T Consensus        51 ~~~~~~~~~l~~~~~eA~ri~~~~~~~~~~~~d~~~~r~~~~~~fhv~~i~k~ls~~~~~RLQtgmrga~gkp~G~varV  130 (212)
T KOG0857|consen   51 HLVSNEIEQLSSEALEAARICANKPMVKSKGKDAFHLRVRVHPNFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTVARV  130 (212)
T ss_pred             hhhhHHHHhHHHHHHHHhhhcccCcccccccccchhhhhhcccchhHHHHhhhhcccchhhhhhcccccccCccceEEEE
Confidence            3556666799999999999999999875   467888899999 55544333         4666888889999999999


Q ss_pred             eCCCEEEEEecc-CCHHHHHHHHHHccccCCcceEEEec
Q psy6080         151 KTGRIIIEVGGK-CSYEEVLPYLRSCASKMPFKCMPCNE  188 (240)
Q Consensus       151 k~G~iIfEi~g~-~~~~~ak~aLk~aa~KLP~k~kiV~~  188 (240)
                      .-|++||.+... .+.+.+.++|.++..|+|...+++..
T Consensus       131 ~iGqvi~Svrtk~~nkeh~ieal~rak~kfpG~qki~vs  169 (212)
T KOG0857|consen  131 HIGQVIMSVRTKLQNKEHVIEALRRAKFKFPGRQKIVVS  169 (212)
T ss_pred             EcCceEEEeecCcccHHHHHHHHHhccccCCCceeEEee
Confidence            999999999986 67899999999999999998877743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
2ftc_I	118	Structural Model For The Large Subunit Of The Mamma		1e-23
3fin_Q	136	T. Thermophilus 70s Ribosome In Complex With Mrna,		2e-05
1wki_A	141	Solution Structure Of Ribosomal Protein L16 From Th		2e-05
3pyo_M	136	Crystal Structure Of A Complex Containing Domain 3		4e-05
1vsa_K	141	Crystal Structure Of A 70s Ribosome-Trna Complex Re		4e-05

>pdb|2FTC|I Chain I, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 118

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 68/116 (58%)
Query: 68  LRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPV 127
           +RGP           + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+ P+
Sbjct: 2   IRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPI 61
Query: 128 TXXXXXXXXXXXXXSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
           T             +IDHYVTPVK GR+++E+GG+C +EEV  +L   A K+PF  
Sbjct: 62  TRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAA 117

>pdb|3FIN|Q Chain Q, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 68  LRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPV 127
           L+G  +  +Y+    YGLVAL    +  +  E  R AM+R    ++   ++    P  P 
Sbjct: 12  LKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHF--RRGGKIFIRIFPDKPY 69
Query: 128 TXXXXXXXXXXXXXSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187
           T             +++ YV  VK GR++ EV G  + E+ +  LR    K+P K     
Sbjct: 70  TKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAG-VTEEQAMEALRIAGHKLPIKTKIVR 128
Query: 188 ED 189
            D
Sbjct: 129 RD 130

>pdb|1WKI|A Chain A, Solution Structure Of Ribosomal Protein L16 From Thermus Thermophilus Hb8 Length = 141

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 68  LRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKL-DVKKMFAVWRVDPPWLP 126
           L+G  +  +Y+    YGLVAL    +  +  E  R AM+R      K+F     D P+  
Sbjct: 17  LKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPY-- 74
Query: 127 VTXXXXXXXXXXXXXSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPC 186
            T             +++ YV  VK GR++ EV G  + E+ +  LR    K+P K    
Sbjct: 75  -TKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAG-VTEEQAMEALRIAGHKLPIKTKIV 132
Query: 187 NED 189
             D
Sbjct: 133 RRD 135

>pdb|3PYO|M Chain M, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 68  LRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPV 127
           L+G  +  +Y+    +GLVAL    +  +  E  R AM+R    ++   ++    P  P 
Sbjct: 12  LKGATKGGDYVAFGDFGLVALEPAWITAQQIEAARVAMVRHF--RRGGKIFIRIFPDKPY 69
Query: 128 TXXXXXXXXXXXXXSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187
           T             +++ YV  VK GR++ EV G  + E+ +  LR    K+P K     
Sbjct: 70  TKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAG-VTEEQAMEALRIAGHKLPIKTKIVR 128
Query: 188 ED 189
            D
Sbjct: 129 RD 130

>pdb|1VSA|K Chain K, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 141

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 68  LRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKL-DVKKMFAVWRVDPPWLP 126
           L+G  +  +Y+    +GLVAL    +  +  E  R AM+R      K+F     D P+  
Sbjct: 17  LKGATKGGDYVAFGDFGLVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPY-- 74
Query: 127 VTXXXXXXXXXXXXXSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPC 186
            T             +++ YV  VK GR++ EV G  + E+ +  LR    K+P K    
Sbjct: 75  -TKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAG-VTEEQAMEALRIAGHKLPIKTKIV 132
Query: 187 NED 189
             D
Sbjct: 133 RRD 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
2ftc_I	118	Mitochondrial ribosomal protein L16, 39S ribosomal	6e-33
2zjr_J	142	50S ribosomal protein L16; ribosome, large ribosom	1e-22
3bbo_O	135	Ribosomal protein L16; large ribosomal subunit, sp	1e-22
3r8s_M	136	50S ribosomal protein L16; protein biosynthesis, R	1e-20
2pa2_A	151	60S ribosomal protein L10; QM protein, , structura	9e-09
1vq8_H	171	50S ribosomal protein L10E; ribosome 50S, protein-	6e-06
3j0l_J	219	Ribosomal protein L10; mammalia, translation, elon	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2zkr_h	214	60S ribosomal protein L10; protein-RNA complex, 60	2e-05
3iz5_I	224	60S ribosomal protein L10 (L10E); eukaryotic ribos	4e-05
1ffk_F	157	Ribosomal protein L10E; ribosome assembly, RNA-RNA	4e-05
4a17_H	215	RPL10, 60S ribosomal protein L10; eukaryotic ribos	9e-05

>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I Length = 118

 Score =  115 bits (288), Expect = 6e-33
 Identities = 55/116 (47%), Positives = 79/116 (68%)

Query: 68  LRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPV 127
           +RGP           + ++AL GG +++ HFE +R  + R +D K MFA+WRV  P+ P+
Sbjct: 2   IRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPI 61

Query: 128 TKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
           T+K +G RMGGGKG+IDHYVTPVK GR+++E+GG+C +EEV  +L   A K+PF  
Sbjct: 62  TRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAA 117

>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ... Length = 142

 Score = 89.3 bits (221), Expect = 1e-22
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 3/128 (2%)

Query: 68  LRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPV 127
           + G  +  +Y+    YGL+A+    +     E  R  M R          +    P  PV
Sbjct: 18  MTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKI--YIRIFPDKPV 75

Query: 128 TKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187
           TKK   +RMG GKG+++++V+ VK GR++ EV G    E+     R    K+P +     
Sbjct: 76  TKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVT-EEQAKEAFRLAGHKLPIQTKMVK 134

Query: 188 EDILREMK 195
            ++  E +
Sbjct: 135 REVYDEAQ 142

>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Length = 135

 Score = 88.9 bits (220), Expect = 1e-22
 Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 3/116 (2%)

Query: 68  LRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPV 127
           ++G     N +   +Y L AL    +  R  E  R AM R    ++   +W    P  PV
Sbjct: 17  MKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNA--RRGGKIWVRIFPDKPV 74

Query: 128 TKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
           T +   +RMG GKGS +++V  VK GRI+ E+ G          +   ASKMP + 
Sbjct: 75  TVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVA-ENIARRAVAIAASKMPIRT 129

>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ... Length = 136

 Score = 83.5 bits (206), Expect = 1e-20
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 76  NYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSR 135
             +    +GL A+  GR+  R  E  R AM R +  K+   +W    P  P+T+K L  R
Sbjct: 24  TDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAV--KRQGKIWIRVFPDKPITEKPLAVR 81

Query: 136 MGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
           MG GKG+++++V  ++ G+++ E+ G    E      +  A+K+P K 
Sbjct: 82  MGKGKGNVEYWVALIQPGKVLYEMDGVP-EELAREAFKLAAAKLPIKT 128

>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1 Length = 151

 Score = 52.0 bits (124), Expect = 9e-09
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 13/115 (11%)

Query: 82  QYGLVALSGGRMNYRHFETIRFAMMRKLDV---KKMFAVWRVDPPWLPVTKK-------- 130
              +V+    +++    E  R    + +     K  F +     P+  +           
Sbjct: 18  CGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGA 77

Query: 131 -GLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCASKMPFKC 183
             L + M G  G     V  V  G++I+ +  K  + E V+  LR    K P + 
Sbjct: 78  DRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQ 132

>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ... Length = 171

 Score = 44.3 bits (104), Expect = 6e-06
 Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 1/70 (1%)

Query: 115 FAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLR 173
             V R +          +   M    G I      V+ G  +          E V    R
Sbjct: 92  HQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFR 151

Query: 174 SCASKMPFKC 183
              +K+   C
Sbjct: 152 RAYNKITPSC 161

>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I Length = 219

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 13/115 (11%)

Query: 82  QYGLVALSGGRMNYRHFETIRFAMMRKLDV---KKMFAVWRVDPPWLPVTKK-------- 130
              LV+    +++    E  R    + +     +  F +     P+  +           
Sbjct: 47  CVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGA 106

Query: 131 -GLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCASKMPFKC 183
             L   M G  G        V  G+II  V  K  + + V+  LR    K P + 
Sbjct: 107 DRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQ 161

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 41/255 (16%), Positives = 71/255 (27%), Gaps = 73/255 (28%)

Query: 23  LKNIKKPPNYDHIV-MP---ERPRLKFVDKVPTFIYNHKTPRTTKRL--DLLRGPEEIHN 76
            K+I      DHI+            F      +    K     ++   ++LR      N
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLF------WTLLSKQEEMVQKFVEEVLR-----IN 90

Query: 77  Y-----LIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKG 131
           Y      I  +          M  R +   R  +     V   + V R+ P      ++ 
Sbjct: 91  YKFLMSPIKTEQ-----RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL--KLRQA 143

Query: 132 L------------GSRMGG-GKGSI------DHYVTPVKTGRII-IEVGGKCSYEEVLPY 171
           L            G  + G GK  +       + V      +I  + +    S E VL  
Sbjct: 144 LLELRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 172 LRS-CASKMPFKCMPCN------------EDILRE-MKEKEEREA---RDNI-NPYTFEY 213
           L+       P      +            +  LR  +K K          N+ N   +  
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 214 MIKNNIGNCRQWIST 228
               N+  C+  ++T
Sbjct: 262 F---NLS-CKILLTT 272

>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 214

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 18/164 (10%)

Query: 37  MPERP----RLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGR 92
           M  RP    R       P   +    P   K      G ++           +V+    +
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDA-KIRIFDLGRKKAKVDEFPLCGHMVSDEYEQ 59

Query: 93  MNYRHFETIRFAMMRKLDV---KKMFAVWRVDPPWLPVTKK---------GLGSRMGGGK 140
           ++    E  R    + +     K  F +     P+  +             L + M G  
Sbjct: 60  LSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAF 119

Query: 141 GSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCASKMPFKC 183
           G     V  V  G++I+ +  K  + E V+  LR    K P + 
Sbjct: 120 GKPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQ 163

>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ... Length = 157

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 13/105 (12%), Positives = 23/105 (21%), Gaps = 5/105 (4%)

Query: 82  QYGLVALSGGRMNYRHFETIRFAMMRKLDV---KKMFAVWRVDPPWLPVTKKGLGSRMGG 138
           Q   V     ++ +   E  R A  R +        +       P+  + ++  G  M  
Sbjct: 45  QVENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPFHVIREQ-DGDGMRA 103

Query: 139 GKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
             G                          V    R    K+    
Sbjct: 104 PFGKSVGTAARSHGANHDFIAWVN-PDPAVEFAWRRAYMKVTPTV 147

>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H Length = 215

 Score = 41.2 bits (96), Expect = 9e-05
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 115 FAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLR 173
           + V R++          L S M G  G        V  G I+  V  K    +  +  L 
Sbjct: 94  WHVLRINKMLSCAGADRLQSGMRGAFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALT 153

Query: 174 SCASKMPFKC 183
              +K P + 
Sbjct: 154 RAKAKFPGRQ 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3r8s_M	136	50S ribosomal protein L16; protein biosynthesis, R	100.0
3bbo_O	135	Ribosomal protein L16; large ribosomal subunit, sp	100.0
2zjr_J	142	50S ribosomal protein L16; ribosome, large ribosom	100.0
2ftc_I	118	Mitochondrial ribosomal protein L16, 39S ribosomal	100.0
1ffk_F	157	Ribosomal protein L10E; ribosome assembly, RNA-RNA	100.0
1vq8_H	171	50S ribosomal protein L10E; ribosome 50S, protein-	100.0
2zkr_h	214	60S ribosomal protein L10; protein-RNA complex, 60	100.0
3j21_N	181	50S ribosomal protein L10E; archaea, archaeal, KIN	100.0
4a17_H	215	RPL10, 60S ribosomal protein L10; eukaryotic ribos	100.0
3j0l_J	219	Ribosomal protein L10; mammalia, translation, elon	100.0
2pa2_A	151	60S ribosomal protein L10; QM protein, , structura	100.0
3iz5_I	224	60S ribosomal protein L10 (L10E); eukaryotic ribos	99.98

>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...

Probab=100.00  E-value=5e-49  Score=324.19  Aligned_cols=134  Identities=27%  Similarity=0.398  Sum_probs=129.2

Q ss_pred             CCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecC
Q psy6080          51 TFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKK  130 (240)
Q Consensus        51 ~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK  130 (240)
                      +.|+++||+|+|||  +++|.+ ++|+|.||+|||+|+|+|+||++||||||++|+|+|+  +++++|||+|||+|||+|
T Consensus         2 l~Pk~~k~rK~~kg--r~~g~~-~g~~l~fG~~gL~a~e~~~it~~qiEaaR~ai~R~lk--r~gk~wirv~P~~pvt~k   76 (136)
T 3r8s_M            2 LQPKRTKFRKMHKG--RNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVK--RQGKIWIRVFPDKPITEK   76 (136)
T ss_dssp             CCCSSCSSSSCCCC--CCCSCC-SCCSCCSSSEEEEECSCEEEEHHHHHHHHHHHHHTTC--SCSEEEECCCCCEEEEEC
T ss_pred             CCCCCCCcCcCcCC--CCCCcC-CCceEecceEEEEECcCCeECHHHHHHHHHHHHHhhh--cCcEEEEEECCCCceEeC
Confidence            35999999999997  899999 9999999999999999999999999999999999995  578999999999999999


Q ss_pred             CCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecch
Q psy6080         131 GLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDI  190 (240)
Q Consensus       131 ~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~~  190 (240)
                      |+++|||+|||+|+||||+|++|+||||++| ++++.|++||++|++|||++|+||+++.
T Consensus        77 ~~etRMGkGKG~~~~wva~Vk~G~ilfEi~g-~~~~~A~eAlr~a~~KLP~~~kiv~~~~  135 (136)
T 3r8s_M           77 PLAVRMGKGKGNVEYWVALIQPGKVLYEMDG-VPEELAREAFKLAAAKLPIKTTFVTKTV  135 (136)
T ss_dssp             CSSCCSCSSCCEEEEEEEEECTTCEEEEEES-SCHHHHHHHHHHHHTTCSSCEEEEECCC
T ss_pred             chhccCCCCCCCCCEEEEEECCCCEEEEEeC-CCHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            9999999999999999999999999999999 7999999999999999999999999863

>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2

Probab=100.00  E-value=3.7e-49  Score=324.60  Aligned_cols=133  Identities=28%  Similarity=0.330  Sum_probs=129.1

Q ss_pred             CCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecC
Q psy6080          51 TFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKK  130 (240)
Q Consensus        51 ~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK  130 (240)
                      +.|+++||+|+||+  +++|.+.++++|.||+|||+|+|+|+||++||||||++|+|+|  +++|++|||+|||+|||+|
T Consensus         2 l~Pkr~k~rK~~kg--r~~g~~~~g~~l~fG~~gL~a~e~~~it~~qiEaaR~ai~R~l--k~~~k~wirv~P~~pvt~k   77 (135)
T 3bbo_O            2 LSPKRTRFRKQHRG--RMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNA--RRGGKIWVRIFPDKPVTVR   77 (135)
T ss_dssp             CCCCCCCCCCCCCC--CCCCTTSCCCCCCSSSEEEEESSCCCCCHHHHHHHHHHHHHTT--CSSSCCCCCCCCCSCCCCC
T ss_pred             CCCCcCccccCcCC--CCCCccCCCCEEeeceEEEEECcCCccCHHHHHHHHHHHHHHh--hhCcEEEEEeCCCcccEec
Confidence            36999999999997  8999999999999999999999999999999999999999999  5789999999999999999


Q ss_pred             CCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080         131 GLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE  188 (240)
Q Consensus       131 ~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~  188 (240)
                      |+|+|||+|||+|+||||+|++|+||||++| ++++.|++||++|++|||++|+||++
T Consensus        78 ~~e~RMG~GKG~~~~wva~Vk~G~ilfEi~g-v~~~~A~eAlr~a~~KLP~~~kiv~~  134 (135)
T 3bbo_O           78 PAETRMGSGKGSPEYWVAVVKPGRILYEISG-VAENIARRAVAIAASKMPIRTQFIIS  134 (135)
T ss_dssp             CSSCCSSCCCSCSSCCCCCCCTTCEEEEECS-SCTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred             cccccccccCCCceEEEEEECCCCEEEEEec-CCHHHHHHHHHHHHhhCCCcEEEEec
Confidence            9999999999999999999999999999999 89999999999999999999999975

>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.41.4.2 PDB: 1sm1_K* 2zjp_J* 2zjq_J 1nkw_K 3cf5_J* 3dll_J* 3pio_J* 1njm_K* 1nwx_K* 1njp_K* 1xbp_K* 1y69_K 1nwy_K* 3pip_J* 1pnu_K 1pny_K 1vor_N 1vou_N 1vow_N 1voy_N ...

Probab=100.00  E-value=6.2e-49  Score=325.67  Aligned_cols=136  Identities=26%  Similarity=0.417  Sum_probs=129.0

Q ss_pred             CCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecC
Q psy6080          51 TFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKK  130 (240)
Q Consensus        51 ~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK  130 (240)
                      +.|+++||+|+||+  +++|.+.++++|.||+|||+|+|+|+||++||||||++|+|+|+  ++|++|||+|||+|||+|
T Consensus         3 l~Pkr~k~rK~~kg--r~~g~~~~g~~l~fG~~gL~a~e~~~it~~qiEAaR~ai~R~lk--r~gk~wirv~P~~pvt~K   78 (142)
T 2zjr_J            3 LLPKRTKFRKQFRG--RMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFR--RGGKIYIRIFPDKPVTKK   78 (142)
T ss_dssp             ---CCCSSCCCCCC--CCCCSCSSCCSSSSSSCEEEECSCBCCBHHHHHHHHHHHHHHCS--SCCCCCCCCCCCCEECCC
T ss_pred             CCCCcCccccCCCC--CcCCcccCCcceecceEEEEECcCCeECHHHHHHHHHHHHHHhh--hCcEEEEEeCCCcceEcC
Confidence            46999999999997  89999999999999999999999999999999999999999995  589999999999999999


Q ss_pred             CCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecchh
Q psy6080         131 GLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDIL  191 (240)
Q Consensus       131 ~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~~l  191 (240)
                      |+++|||+|||+|+||||+|++|+||||++| ++++.|++||++|++|||++|+||+++++
T Consensus        79 p~e~RMG~GKG~~~~wva~Vk~G~ilfEi~g-v~~~~A~eAlr~A~~KLP~~~kiv~~~~~  138 (142)
T 2zjr_J           79 PAETRMGKGKGAVEYWVSVVKPGRVMFEVAG-VTEEQAKEAFRLAGHKLPIQTKMVKREVY  138 (142)
T ss_dssp             SSSCCCSSSCCTTSEEBCCBCTTEEEECCCS-SCSTTTTTHHHHHHHTCSSCEEEECSCCC
T ss_pred             cccccccccCCCCCEEEEEECCCCEEEEEeC-CCHHHHHHHHHHHHhhCCCcEEEEEeccc
Confidence            9999999999999999999999999999999 89999999999999999999999998743

>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I

Probab=100.00  E-value=5.1e-45  Score=293.87  Aligned_cols=118  Identities=47%  Similarity=0.971  Sum_probs=113.7

Q ss_pred             cccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCCCcccCCCCCCcceEE
Q psy6080          67 LLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHY  146 (240)
Q Consensus        67 ~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~~gtRMGkGKG~i~~~  146 (240)
                      +++|.+.++++|.||+|||+|+|+|+||++||||||++|+|+|+++++|++|||+|||+|||+||+|+|||+|||+|+||
T Consensus         1 ~~~g~~~~g~~l~fG~~gL~a~e~~~it~~qiEaaR~ai~r~l~~k~~~~~wirv~P~~pvt~k~~e~RMG~GKG~~~~w   80 (118)
T 2ftc_I            1 DIRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHY   80 (118)
T ss_pred             CccccccCCCeEeeeeEEEEECcCCccCHHHHHHHHHHHHheeeccCCeEEEEEECCCcccCcCchhcccccCCCCccEE
Confidence            46899999999999999999999999999999999999999996668899999999999999999999999999999999


Q ss_pred             EEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceE
Q psy6080         147 VTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCM  184 (240)
Q Consensus       147 varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~k  184 (240)
                      ||+|++|+||||+.|+++++.|++||++|++|||++|+
T Consensus        81 va~Vk~G~ilfEi~g~~~~~~a~eAlr~a~~KlP~~~~  118 (118)
T 2ftc_I           81 VTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAK  118 (118)
T ss_pred             EEEECCCCEEEEEeccCCHHHHHHHHHHHHhhCCCCCC
Confidence            99999999999999988999999999999999999984

>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...

Probab=100.00  E-value=5.6e-40  Score=275.65  Aligned_cols=147  Identities=11%  Similarity=-0.024  Sum_probs=130.2

Q ss_pred             CCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhccc
Q psy6080          30 PNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKL  109 (240)
Q Consensus        30 ~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L  109 (240)
                      --|+.+.-|+|||.+|+.+||. |+.+.|-   .|  +.+..    .++- -..||+|+|.|+||++||||||+++||+|
T Consensus         4 rcyr~~~~~pY~r~~y~~gvP~-~kI~~fd---~G--~~~a~----~~fp-~~~~L~a~E~~~Its~qIEAaRia~nR~l   72 (157)
T 1ffk_F            4 AHFRNSIKPAYTRREYISGIPG-KGIAQFK---MG--NNGAG----PTYP-AQVENVVEKPVQIRHNALEAARNAANRFV   72 (157)
T ss_pred             cccccCCCCCCchhhhcCCCCC-CceEEEe---CC--CCCcc----ccCC-EEEEEEECccccCCHHHHHHHHHHHHHHH
Confidence            3588899999999999999999 9988887   65  33221    1233 46799999999999999999999999999


Q ss_pred             cc---ccceEEEEEcCCCCceecCCCcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEE
Q psy6080         110 DV---KKMFAVWRVDPPWLPVTKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPC  186 (240)
Q Consensus       110 ~k---kk~~~iwirv~P~~pvTkK~~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV  186 (240)
                      ++   +.+|++|||+|||+|||+|+ ++|||+|||++++|||+|++|+||||+.| ++.+.|++||++|++|||++|+||
T Consensus        73 kr~~Gk~~fklwIRifP~~~it~kp-etrMg~gkG~p~~wvArVk~G~ilfei~g-v~~~~A~eAlr~A~~KlP~ktkiv  150 (157)
T 1ffk_F           73 QNSGAAANYKFRIRKFPFHVIREQD-GDGMRAPFGKSVGTAARSHGANHDFIAWV-NPDPAVEFAWRRAYMKVTPTVNID  150 (157)
T ss_pred             HhhcCCcccEEEEEECCCeeeEecc-cccccCCCCCccEEEEEEcCCCEEEEEec-cCHHHHHHHHHHHHhhCCCcEEEE
Confidence            75   23579999999999999999 99999999999999999999999999999 678899999999999999999999


Q ss_pred             ecc
Q psy6080         187 NED  189 (240)
Q Consensus       187 ~~~  189 (240)
                      ...
T Consensus       151 ~~~  153 (157)
T 1ffk_F          151 SSP  153 (157)
T ss_pred             Eec
Confidence            753

>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...

Probab=100.00  E-value=2.3e-38  Score=268.82  Aligned_cols=149  Identities=16%  Similarity=0.133  Sum_probs=126.6

Q ss_pred             CCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccc
Q psy6080          31 NYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLD  110 (240)
Q Consensus        31 ~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~  110 (240)
                      -|+.+.-|+|||.+|+.+||. |+.+.|-   .|  +.+....   ++. -..||+|+|.|+||++||||||+++||+|+
T Consensus         5 cYr~~~~~~Y~r~~y~~gvP~-~kI~~fd---~G--~~~~~~~---~fp-~~~~L~a~E~~~Its~qIEAaRia~~R~lk   74 (171)
T 1vq8_H            5 MYRDIDKPAYTRREYITGIPG-SKIAQHK---MG--RKQKDAD---DYP-VQISLIVEETVQLRHGSLEASRLSANRHLI   74 (171)
T ss_dssp             GTSSCCSCCCCCTTTCCCCCC-CCCCCSB---CS--CTTSCST---TCS-EEEEEEESSCEEEEHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCchhhhcCCCCC-CcEEEEe---cC--CCcCCcc---cCC-EEEEEEECcccccCHHHHHHHHHHHHHHhH
Confidence            488899999999999999999 9999887   65  4332221   122 457999999999999999999999999997


Q ss_pred             c---c-cceEEEEEcCCCCce------ecCCCc---ccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHcc
Q psy6080         111 V---K-KMFAVWRVDPPWLPV------TKKGLG---SRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCA  176 (240)
Q Consensus       111 k---k-k~~~iwirv~P~~pv------TkK~~g---tRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa  176 (240)
                      +   + .+|++|||+|||+||      |.+|.+   +|||+|||++++|||+|++|+||||+.|. ++++.|++||++|+
T Consensus        75 k~~Gk~~~f~iwIRifP~~~ir~nkm~T~kgAdRlq~rMg~gkG~p~~wvArVk~G~ilfei~~~~v~~~~A~eAlr~A~  154 (171)
T 1vq8_H           75 KELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAY  154 (171)
T ss_dssp             HHHCTTCSCEEEECCCCCEEEEECC-----------CCSTTCCCEEEEEEEEECTTCEEEEEEECTTTHHHHHHHHHHHG
T ss_pred             HhcCCCCCcEEEEEEcCCeeEeccccccccchhhhhccccccCCCCcEEEEEECCCCEEEEEECcCCCHHHHHHHHHHHH
Confidence            5   3 678899999999999      777777   99999999999999999999999999995 89999999999999


Q ss_pred             ccCCcceEEEecc
Q psy6080         177 SKMPFKCMPCNED  189 (240)
Q Consensus       177 ~KLP~k~kiV~~~  189 (240)
                      +|||++|+||...
T Consensus       155 ~KLP~ktkiv~~~  167 (171)
T 1vq8_H          155 NKITPSCRIDSSP  167 (171)
T ss_dssp             GGSSSCEEEEECS
T ss_pred             hhCCCcEEEEEec
Confidence            9999999999753

>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=4.3e-37  Score=268.56  Aligned_cols=149  Identities=17%  Similarity=0.146  Sum_probs=130.8

Q ss_pred             CCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccc
Q psy6080          31 NYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLD  110 (240)
Q Consensus        31 ~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~  110 (240)
                      -|+.+.-|+|||.+|+.+||. |+.+.|-   .|  +.+....   ++. -.+||+|+|.|+||++||||||+++||+|+
T Consensus         8 cYr~~~~~pY~r~~y~~gvP~-~kI~~fd---~G--~~~a~~~---~fp-~~~gL~a~E~~~Its~qIEAARia~nR~lk   77 (214)
T 2zkr_h            8 CYRYCKNKPYPKSRFCRGVPD-AKIRIFD---LG--RKKAKVD---EFP-LCGHMVSDEYEQLSSEALEAARICANKYMV   77 (214)
T ss_dssp             GTSSCCSCCCCCTTTCCCCCC-CCCCSSC---EE--CSSSCST---TCS-EEEEEEESSCEEEEHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCChhhhcCCCCC-ccEEEEe---CC--CCcCCcc---cCC-EEEEEEECcccccCHHHHHHHHHHHHHHHh
Confidence            488899999999999999999 9998887   54  3322211   123 567999999999999999999999999997


Q ss_pred             c---ccceEEEEEcCCCCcee------cCCCc---ccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHccc
Q psy6080         111 V---KKMFAVWRVDPPWLPVT------KKGLG---SRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCAS  177 (240)
Q Consensus       111 k---kk~~~iwirv~P~~pvT------kK~~g---tRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa~  177 (240)
                      +   +.+|++|||+|||+|||      .+|.+   +|||+|||++++|||+|++|+|||||.|. ++++.|++||++|++
T Consensus        78 r~~Gk~~fklwIRifP~~~it~nkmls~kgAdRlqtgMg~gkGkp~~wvArVkpGqilfEi~~~~v~~~~A~eALr~A~~  157 (214)
T 2zkr_h           78 KSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKF  157 (214)
T ss_dssp             HHHCTTCCEEEECCCCCEEEEECTTTCCSSCSSTTSSSTTCCCEEEEEEEEECTTCEEEEEEECSTTHHHHHHHHHHHHH
T ss_pred             hccCCcCcEEEEEECCCceeecccccccCCchhhcccccCCCCCCcEEEEEECCCCEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            5   24679999999999999      66666   99999999999999999999999999995 899999999999999


Q ss_pred             cCCcceEEEecc
Q psy6080         178 KMPFKCMPCNED  189 (240)
Q Consensus       178 KLP~k~kiV~~~  189 (240)
                      |||++|+||...
T Consensus       158 KLP~ktkiv~~~  169 (214)
T 2zkr_h          158 KFPGRQKIHISK  169 (214)
T ss_dssp             TSSSCEEEEECC
T ss_pred             hCCCcEEEEEec
Confidence            999999999766

>3j21_N 50S ribosomal protein L10E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3.7e-37  Score=263.06  Aligned_cols=149  Identities=14%  Similarity=0.092  Sum_probs=132.7

Q ss_pred             CCCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcc
Q psy6080          29 PPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRK  108 (240)
Q Consensus        29 ~~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~  108 (240)
                      ---|+.+.-|+|||.+|+.+||. |+.+.|-   .|  +-+.      ++. ....|+|+|.++||++||||||+++||+
T Consensus         6 arcYr~~~~~pY~r~~y~~GvP~-~KI~~fd---~G--~k~a------~fp-~~~~L~a~E~~qIss~qiEAARia~nRy   72 (181)
T 3j21_N            6 AKIDRYVDKPAYTRREYIRGAPG-PKITIFD---MG--NPAG------DFE-FEVSLHTAEPVQIRQNALEAARQQVNRY   72 (181)
T ss_dssp             SSSTTCSSSCCCCCTTTSSCCCC-CSCCCCE---EE--SCTT------SCC-EEEEEEECSCEEEEHHHHHHHHHHHHHH
T ss_pred             HHhhccCCCCCCchhhhcCCCCC-CeEEEEe---cC--cccC------CCC-EEEEEEEcccccccHHHHHHHHHHHHHH
Confidence            34588999999999999999999 9999887   43  2222      223 5678999999999999999999999999


Q ss_pred             ccc---ccceEEEEEcCCCCceecCC---------CcccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHc
Q psy6080         109 LDV---KKMFAVWRVDPPWLPVTKKG---------LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSC  175 (240)
Q Consensus       109 L~k---kk~~~iwirv~P~~pvTkK~---------~gtRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~a  175 (240)
                      |.+   +.+|++|||+|||+|||+|+         +++|||+|||++++|||+|++|+||||+.|. ++++.|++||++|
T Consensus        73 l~r~~Gk~~fhl~IRifP~~vir~nkmls~agAdRl~~gM~~~kGkp~gwvArVk~Gqilfei~~~~~~~~~A~eAlr~A  152 (181)
T 3j21_N           73 LQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRA  152 (181)
T ss_dssp             HHHHHCTTSCEEECCCCCCCCCCCCCCCCCCTTCCSCCSSSSCSCCCCCCEEEECSSEEEEEEEECSTTHHHHHHHHHHH
T ss_pred             HHHhcCCccceEEEEECCCceeeecccccccchhhhccccccccCCcceEEEEEcCCCEEEEEEecCCCHHHHHHHHHHH
Confidence            976   56788999999999999998         4999999999999999999999999999996 6899999999999


Q ss_pred             cccCCcce--EEEecch
Q psy6080         176 ASKMPFKC--MPCNEDI  190 (240)
Q Consensus       176 a~KLP~k~--kiV~~~~  190 (240)
                      ++|||++|  +||..+.
T Consensus       153 ~~KlP~~t~~kiv~~~~  169 (181)
T 3j21_N          153 AMKFPCKCYYRIYDKEG  169 (181)
T ss_dssp             HHSSSSCCSSCEEECCC
T ss_pred             hccCCCCeeeEEEEecc
Confidence            99999999  9997754

>4a17_H RPL10, 60S ribosomal protein L10; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_H 4a1c_H 4a1e_H

Probab=100.00  E-value=3.9e-36  Score=262.53  Aligned_cols=150  Identities=17%  Similarity=0.144  Sum_probs=130.2

Q ss_pred             CCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccc
Q psy6080          31 NYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLD  110 (240)
Q Consensus        31 ~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~  110 (240)
                      -|+.+.-|+|||.+|+.+||. |+.+.|-   .|  +-+...   .++- ....|+|+|.++||++||||||+++||+|.
T Consensus         8 cYr~~~~~pY~r~~y~~GvP~-~KI~~fd---~G--~kka~~---~~fp-~~~~L~a~E~~qIss~qIEAARia~nRyl~   77 (215)
T 4a17_H            8 CYRQPKGKPYPKSRYNRGVPD-ARIRIYD---SG--RKKATV---EEFP-YVVHIVSDEKEQITSEALEAARIAANKNLI   77 (215)
T ss_dssp             GTSSCCSCCCCSCTTCCSCCC-CSCCCCE---EE--CTTCCT---TTCC-EEEEEEECSCEEEEHHHHHHHHHHHHHHHH
T ss_pred             hhccccCCCCchhhccCCCCC-CcEEEEe---CC--CCcCCc---ccCC-eeEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence            488899999999999999999 9999886   43  222111   1223 457899999999999999999999999997


Q ss_pred             c---ccceEEEEEcCCCCceecCCC---------cccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHccc
Q psy6080         111 V---KKMFAVWRVDPPWLPVTKKGL---------GSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCAS  177 (240)
Q Consensus       111 k---kk~~~iwirv~P~~pvTkK~~---------gtRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa~  177 (240)
                      +   +.+|++|||+|||+|||+|++         ++|||+|||++++|||+|++|+|||||.|. .+++.|++||++|++
T Consensus        78 r~~GK~~fhl~IRifP~~vir~nkmls~agAdRl~tgM~~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~~  157 (215)
T 4a17_H           78 KFISKDAFHLRCRVHPWHVLRINKMLSCAGADRLQSGMRGAFGKALGKAARVDIGSILFSVRVKEPHVKYAIDALTRAKA  157 (215)
T ss_dssp             HHSCGGGCEEEECCCCCEEEEECC-----------CTTSCCCCEEEEEEEEECTTCEEEEEEECGGGHHHHHHHHHHHGG
T ss_pred             HhcCCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCCCHHHHHHHHHHHhh
Confidence            6   567889999999999999997         999999999999999999999999999995 679999999999999


Q ss_pred             cCCcceEEEecch
Q psy6080         178 KMPFKCMPCNEDI  190 (240)
Q Consensus       178 KLP~k~kiV~~~~  190 (240)
                      |||++|+||...-
T Consensus       158 KlP~~tkiv~~~k  170 (215)
T 4a17_H          158 KFPGRQKVVTSQK  170 (215)
T ss_dssp             GSSSCEEEEEESB
T ss_pred             hCCCceEEEEccc
Confidence            9999999997654

>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle, tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB: 3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I 4b6a_I

Probab=100.00  E-value=4.2e-36  Score=262.91  Aligned_cols=151  Identities=16%  Similarity=0.126  Sum_probs=130.7

Q ss_pred             CCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhccc
Q psy6080          30 PNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKL  109 (240)
Q Consensus        30 ~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L  109 (240)
                      --|+.+.-|+|||.+|+.+||. |+.+.|-   .|  +-+...   .++- ....|+|+|.++||++||||||+++||+|
T Consensus         5 rcYr~~~~~pY~r~~y~~GvP~-~KI~~fd---~G--~kka~~---~efp-~~~~L~a~E~~qIss~qIEAARia~nRyl   74 (219)
T 3j0l_J            5 RCYRYQKNKPYPKSRYNRAVPD-SKIRIYD---LG--KKKATV---DEFP-LCVHLVSNELEQLSSEALEAARICANKYM   74 (219)
T ss_dssp             SSCSSCSSSCCCCSTTSTTCCC-CSCCCSB---CS--SCSCCS---SSSC-CCEEEECCSCEEECHHHHHHHHHHHHHHH
T ss_pred             hhccccCCCCCchhhccCCCCC-CcEEEEe---CC--CCcCCc---ccCC-eeEEEEECccccccHHHHHHHHHHHHHHH
Confidence            4588999999999999999999 9999987   54  322211   1122 45789999999999999999999999999


Q ss_pred             cc---ccceEEEEEcCCCCceecCCC---------cccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHHHcc
Q psy6080         110 DV---KKMFAVWRVDPPWLPVTKKGL---------GSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCA  176 (240)
Q Consensus       110 ~k---kk~~~iwirv~P~~pvTkK~~---------gtRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk~aa  176 (240)
                      .+   +.+|++|||+|||+|||+|++         ++|||+|||++++|||+|++|+|||||.|. .+++.|++||++|+
T Consensus        75 ~r~~GK~~fhlwIRifP~~vir~nkmls~AgAdRl~tgMr~akGkp~gwvArVk~Gqilfei~g~~~~~~~A~eALr~A~  154 (219)
T 3j0l_J           75 TTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRAR  154 (219)
T ss_dssp             HHTTCTTTCCBCCCSCCCCEEEECC-----------CCSSCCCCEEEEECEEECTTCEESCCCCCGGGHHHHHHHHHHHH
T ss_pred             HHhcCCccceEEEEECCCceeeecccccccchhhhhccccCCCCCCCeEEEEEcCCCEEEEEEecCcCHHHHHHHHHHHh
Confidence            76   456779999999999999997         999999999999999999999999999995 67899999999999


Q ss_pred             ccCCcceEEEecch
Q psy6080         177 SKMPFKCMPCNEDI  190 (240)
Q Consensus       177 ~KLP~k~kiV~~~~  190 (240)
                      +|||++|+||....
T Consensus       155 ~KLP~~tkiv~~~k  168 (219)
T 3j0l_J          155 YKFPGQQKIILSKK  168 (219)
T ss_dssp             HSSSCCCCCEECCC
T ss_pred             hhCCCCeEEEEecc
Confidence            99999999997654

>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1

Probab=100.00  E-value=1.3e-34  Score=241.67  Aligned_cols=109  Identities=19%  Similarity=0.186  Sum_probs=82.8

Q ss_pred             EeEEEEEeeCcccchhhHHHHHHHHhccccc---ccceEEEEEcCCCCce------ecCCCc---ccCCCCCCcceEEEE
Q psy6080          81 KQYGLVALSGGRMNYRHFETIRFAMMRKLDV---KKMFAVWRVDPPWLPV------TKKGLG---SRMGGGKGSIDHYVT  148 (240)
Q Consensus        81 G~yGL~ale~G~It~~qlEaaR~~InR~L~k---kk~~~iwirv~P~~pv------TkK~~g---tRMGkGKG~i~~~va  148 (240)
                      -..||+|+|.++||++||||||+++||+|++   +.+|++|||+|||+||      |++|.+   +|||+|||++++|||
T Consensus        17 ~~~~L~a~E~~~Its~qIEAaRia~~R~lkr~~Gk~~~~iwIRifP~~~ir~nkmlT~kgadRlq~gMg~gkG~p~~wvA   96 (151)
T 2pa2_A           17 LCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA   96 (151)
T ss_dssp             EEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC-----------------------------CCEE
T ss_pred             EEEEEEECccccCCHHHHHHHHHHHHHHHhhhcCCcCcEEEEEECCCeeEeecccccccchhhhhcccccCCCCccEEEE
Confidence            4579999999999999999999999999975   3568999999999999      778877   999999999999999


Q ss_pred             EEeCCCEEEEEecc-CCHHHHHHHHHHccccCCcceEEEecc
Q psy6080         149 PVKTGRIIIEVGGK-CSYEEVLPYLRSCASKMPFKCMPCNED  189 (240)
Q Consensus       149 rVk~G~iIfEi~g~-~~~~~ak~aLk~aa~KLP~k~kiV~~~  189 (240)
                      +|++|+||||+.|. ++++.|++||++|++|||++|+||..+
T Consensus        97 rVk~G~ilfei~~~~v~~~~A~eAlr~A~~KlP~ktkiv~~~  138 (151)
T 2pa2_A           97 RVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK  138 (151)
T ss_dssp             EECTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEES
T ss_pred             EECCCCEEEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence            99999999999995 799999999999999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d2gyck1	131	d.41.4.2 (K:3-133) Ribosomal protein L16p {Escheri	6e-29
d2j01q1	136	d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus	1e-27
d1vqoh1	163	d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeo	2e-23
d1jj2h_	167	d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Hal	7e-19
d2pa2a1	137	d.41.4.1 (A:40-176) Ribosomal protein L10e {Human	6e-15

>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Escherichia coli [TaxId: 562]

 Score =  103 bits (259), Expect = 6e-29
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 3/108 (2%)

Query: 76  NYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGSR 135
             +    +GL A+  GR+  R  E  R AM R +  K+   +W    P  P+T+K L  R
Sbjct: 22  TDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAV--KRQGKIWIRVFPDKPITEKPLAVR 79

Query: 136 MGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
           MG GKG+++++V  ++ G+++ E+ G    E      +  A+K+P K 
Sbjct: 80  MGKGKGNVEYWVALIQPGKVLYEMDGV-PEELAREAFKLAAAKLPIKT 126

>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]} Length = 136

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Thermus thermophilus [TaxId: 274]

 Score =  100 bits (251), Expect = 1e-27
 Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 3/128 (2%)

Query: 68  LRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPV 127
           L+G  +  +Y+    YGLVAL    +  +  E  R AM+R    ++   ++    P  P 
Sbjct: 12  LKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHF--RRGGKIFIRIFPDKPY 69

Query: 128 TKKGLGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCN 187
           TKK L  RMG GKG+++ YV  VK GR++ EV G  + E+ +  LR    K+P K     
Sbjct: 70  TKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGV-TEEQAMEALRIAGHKLPIKTKIVR 128

Query: 188 EDILREMK 195
            D   E +
Sbjct: 129 RDAYDEAQ 136

>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 163

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 90.3 bits (224), Expect = 2e-23
 Identities = 25/171 (14%), Positives = 47/171 (27%), Gaps = 24/171 (14%)

Query: 27  KKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLV 86
           K    Y  I  P   R +++  +P      K  +         G ++        Q  L+
Sbjct: 1   KPASMYRDIDKPAYTRREYITGIP----GSKIAQHK------MGRKQKDADDYPVQISLI 50

Query: 87  ALSGGRMNYRHFETIRFAMMRKLDVK----KMFAVWRVDPPWLPVTKK---------GLG 133
                ++ +   E  R +  R L  +      + +     P   + +           + 
Sbjct: 51  VEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVS 110

Query: 134 SRMGGGKGSIDHYVTPVKTGRIIIEVGGKC-SYEEVLPYLRSCASKMPFKC 183
             M    G I      V+ G  +          E V    R   +K+   C
Sbjct: 111 DGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSC 161

>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 167

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 78.7 bits (194), Expect = 7e-19
 Identities = 22/164 (13%), Positives = 36/164 (21%), Gaps = 14/164 (8%)

Query: 27  KKPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPR----TTKRLDLLRGPEEIHNYLI-HK 81
           K    Y +   P   R +++  +P      K  +              P ++   +    
Sbjct: 1   KPGAMYRNSSKPAYTRREYISGIP----GKKIAQFDMGNNGAGP--TYPAQVELVVEKPV 54

Query: 82  QYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFA--VWRVDPPWLPVTKKGLGSRMGGG 139
           Q    AL   R+    +     A        + F   V R +              M   
Sbjct: 55  QIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMRAP 114

Query: 140 KGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKC 183
            G        V     I           V    R    K+    
Sbjct: 115 FGKPVGTAARVHGANHIFIAWVN-PDPNVEEAWRRAKMKVTPTI 157

>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (164), Expect = 6e-15
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 13/112 (11%)

Query: 85  LVALSGGRMNYRHFETIRFAMMRKLDVK---KMFAVWRVDPPWLPVTKK---------GL 132
           +V+    +++    E  R    + +        F +     P+  +             L
Sbjct: 13  MVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRL 72

Query: 133 GSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLRSCASKMPFKC 183
            + M G  G     V  V  G++I+ +  K  + E V+  LR    K P + 
Sbjct: 73  QTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQ 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d2j01q1	136	Ribosomal protein L16p {Thermus thermophilus [TaxI	100.0
d2gyck1	131	Ribosomal protein L16p {Escherichia coli [TaxId: 5	100.0
d1jj2h_	167	Ribosomal protein L10e {Archaeon Haloarcula marism	100.0
d1vqoh1	163	Ribosomal protein L10e {Archaeon Haloarcula marism	100.0
d2pa2a1	137	Ribosomal protein L10e {Human (Homo sapiens) [TaxI	100.0

>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.4e-50  Score=327.17  Aligned_cols=134  Identities=33%  Similarity=0.492  Sum_probs=130.1

Q ss_pred             CCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCCCcc
Q psy6080          55 NHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGLGS  134 (240)
Q Consensus        55 ~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~~gt  134 (240)
                      ++||+|+||+  +++|.+..+|+|.||+|||+|+++|+|+++||||||++|+|+|+  +.+++|+++|||+|||+||+|+
T Consensus         1 rtKyrK~~kg--r~~g~~~~~~~l~fG~yGL~a~~~g~it~~qiEa~R~~i~r~lk--~~gk~wiri~P~~pvTkKp~e~   76 (136)
T d2j01q1           1 RMKYRKQQRG--RLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFR--RGGKIFIRIFPDKPYTKKPLEV   76 (136)
T ss_dssp             CCSSCCCCCC--CCCSCTTSCCCCCSSSSEEEESSCEEEEHHHHHHHHHHHHHHTS--SCCEEEECCCCCEEECCCCSSC
T ss_pred             CCCcCCCCCC--CCCCcCCCCCEeecccceeeeeEccEEcHHHHHHHHHHHHhhcc--cCCeEEEEecCCeEEEeecccc
Confidence            5899999997  89999999999999999999999999999999999999999994  6799999999999999999999


Q ss_pred             cCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEecchhHH
Q psy6080         135 RMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNEDILRE  193 (240)
Q Consensus       135 RMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~~~l~~  193 (240)
                      |||+|||+||||||+|++|+||||++| +++++|++||++|++|||++|+||++++||+
T Consensus        77 RMGkGKG~i~~wv~~Vk~G~ilfEi~g-v~~~~a~~al~~a~~KLP~k~k~V~r~~~~~  134 (136)
T d2j01q1          77 RMGKGKGNVEGYVAVVKPGRVMFEVAG-VTEEQAMEALRIAGHKLPIKTKIVRRDAYDE  134 (136)
T ss_dssp             CSSSCSCCTTEEEEEECTTCEEEEEES-SCHHHHHHHHHHHHHHSSSCEEEECCSCCCS
T ss_pred             cccCCCCCcceEEEEecCCcEEEEEcC-CCHHHHHHHHHHHHhhCCCcEEEEEeCcccc
Confidence            999999999999999999999999999 8999999999999999999999999999986

>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-49  Score=323.88  Aligned_cols=130  Identities=28%  Similarity=0.419  Sum_probs=124.5

Q ss_pred             CCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhcccccccceEEEEEcCCCCceecCCC
Q psy6080          53 IYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMRKLDVKKMFAVWRVDPPWLPVTKKGL  132 (240)
Q Consensus        53 pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR~L~kkk~~~iwirv~P~~pvTkK~~  132 (240)
                      |+++||+|+||+  +++|.+ .+++|.||+|||+|+|+|+||++||||||++|+|+|  ++++++||++|||+|||+||+
T Consensus         2 PkrtK~rK~~kg--r~~g~~-~g~~l~~G~yGL~ale~g~it~~qiEa~R~~i~R~l--kr~gk~wirifP~~pvTkKp~   76 (131)
T d2gyck1           2 PKRTKFRKMHKG--RNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAV--KRQGKIWIRVFPDKPITEKPL   76 (131)
T ss_dssp             CCCCCSSCCCCC--CSCCCC-CSCCSSCCCCCCEEESCEEEEHHHHHHHHHHHHTTC--TTCCCEEECCCCCBCCCBCCS
T ss_pred             CCCCcccCCcCC--CCcccC-cCceEeeeeeeeEeccCceecHHHHHHHHHHHHHhh--hhCceEEEEecCcEEEEeccc
Confidence            899999999997  788887 588899999999999999999999999999999999  467999999999999999999


Q ss_pred             cccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHccccCCcceEEEec
Q psy6080         133 GSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSCASKMPFKCMPCNE  188 (240)
Q Consensus       133 gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~aa~KLP~k~kiV~~  188 (240)
                      |+|||+|||++|||||+|++|+|||||+| +++++|++||++|++|||++|+||++
T Consensus        77 e~RMGkGKG~~~~wva~Vk~G~ilfEi~g-v~e~~a~~al~~aa~KLP~k~k~i~k  131 (131)
T d2gyck1          77 AVRMGKGKGNVEYWVALIQPGKVLYEMDG-VPEELAREAFKLAAAKLPIKTTFVTK  131 (131)
T ss_dssp             SCSSCCCBCCSCCCEEEECTEEECEEECC-CSCCSSHHHHHHHTTTSSSCBCCCCC
T ss_pred             cceecCCcCCCceEEEEecCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCcEEEEeC
Confidence            99999999999999999999999999999 78899999999999999999999874

>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2.8e-40  Score=278.08  Aligned_cols=151  Identities=13%  Similarity=0.005  Sum_probs=131.6

Q ss_pred             CCCCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhc
Q psy6080          28 KPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMR  107 (240)
Q Consensus        28 ~~~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR  107 (240)
                      |..-|+++..|+|||++|+.+||. ++..+|-   +|  ...+.    .++. .+++|+++|.++|+++||||||+++||
T Consensus         2 p~~~Yr~~~~~~ytr~~yi~gvP~-~kI~~f~---mG--n~~a~----~~f~-~~~~L~a~e~~qi~~~aiEAaR~~~nr   70 (167)
T d1jj2h_           2 PGAMYRNSSKPAYTRREYISGIPG-KKIAQFD---MG--NNGAG----PTYP-AQVELVVEKPVQIRHNALEAARVAANR   70 (167)
T ss_dssp             CGGGTCCCCSCCCCCTTSCCCCCC-CCCCCSE---EE--CTTSC----SCCS-EEEEEEECSCEEEEHHHHHHHHHHHHT
T ss_pred             CccccccCCCCCCccccccCCCCc-cceeecc---Cc--Ccccc----CcCC-eEEEEEEccceeecHHHHHHHHHHHHH
Confidence            455699999999999999999998 8888886   54  33322    1233 477999999999999999999999999


Q ss_pred             cccc---ccceEEEEEcCCCCceecCC---------CcccCCCCCCcceEEEEEEeCCCEEEEEeccCCHHHHHHHHHHc
Q psy6080         108 KLDV---KKMFAVWRVDPPWLPVTKKG---------LGSRMGGGKGSIDHYVTPVKTGRIIIEVGGKCSYEEVLPYLRSC  175 (240)
Q Consensus       108 ~L~k---kk~~~iwirv~P~~pvTkK~---------~gtRMGkGKG~i~~~varVk~G~iIfEi~g~~~~~~ak~aLk~a  175 (240)
                      +|.+   +.+|++|||+|||+|||+||         +++|||+|||++++|||+|++|+||||+.| ++++.|++||++|
T Consensus        71 ~l~~~~g~~~~~~~irvfP~~~ir~kp~~~~agAdr~~~rMg~gkGkp~~~aArVk~G~ilfei~~-~~e~~akeALr~A  149 (167)
T d1jj2h_          71 YVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMRAPFGKPVGTAARVHGANHIFIAWV-NPDPNVEEAWRRA  149 (167)
T ss_dssp             TSTTSCTTCSCEEEECCCCCEEEEECC-----------CCSSSCCCEEEEEEEEECTTCEEEEEEE-SSCCCHHHHHHHH
T ss_pred             HHHHhccccCCeEEEEecCCccEEecccccccccccccccccCCCCCccEEEEEEcCCCEEEEEec-CCHHHHHHHHHHh
Confidence            9976   35799999999999999999         699999999999999999999999999999 5668899999999


Q ss_pred             cccCCcceEEEecch
Q psy6080         176 ASKMPFKCMPCNEDI  190 (240)
Q Consensus       176 a~KLP~k~kiV~~~~  190 (240)
                      ++|||++|+|++..+
T Consensus       150 ~~KLP~~~kI~~~p~  164 (167)
T d1jj2h_         150 KMKVTPTINIDSSPA  164 (167)
T ss_dssp             TTSSSSCEEEEECSC
T ss_pred             cCCCCCCEEEEEcCC
Confidence            999999999998754

>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=6.1e-39  Score=269.05  Aligned_cols=148  Identities=15%  Similarity=0.125  Sum_probs=127.3

Q ss_pred             CCCCCCCccCcCCCCCccCCCCCCCCCCCCCccccCCCCcccCcccCccEEEEEeEEEEEeeCcccchhhHHHHHHHHhc
Q psy6080          28 KPPNYDHIVMPERPRLKFVDKVPTFIYNHKTPRTTKRLDLLRGPEEIHNYLIHKQYGLVALSGGRMNYRHFETIRFAMMR  107 (240)
Q Consensus        28 ~~~~y~~~~~p~~~kl~~~~~~P~~pk~~K~~K~~K~l~~~rG~~~~~~~L~~G~yGL~ale~G~It~~qlEaaR~~InR  107 (240)
                      |..-|++++.|+|||.+|+.++|. ++..+|-   +|  ..++...   ++. .+++|+++|+++|+++||||||+++||
T Consensus         2 P~~~yr~~~~~~ytr~~yi~gvp~-~kI~~f~---~G--~~~~~~~---~f~-~~~~L~a~e~~~i~~~~iEAaR~a~~r   71 (163)
T d1vqoh1           2 PASMYRDIDKPAYTRREYITGIPG-SKIAQHK---MG--RKQKDAD---DYP-VQISLIVEETVQLRHGSLEASRLSANR   71 (163)
T ss_dssp             CGGGTSSCCSCCCCCTTSCCCCCC-CCCCCSE---EE--CTTSCGG---GCS-EEEEEEESSCEEEEHHHHHHHHHHHHH
T ss_pred             CcccccCCCCCCCccccccCCCCC-cceEEec---cC--Ccccccc---ccc-eEEEEEEcccceecHHHHHHHHHHHHh
Confidence            455699999999999999999999 8888887   54  3333211   111 566899999999999999999999999


Q ss_pred             ccccc----cceEEEEEcCCCCceecCCC---------cccCCCCCCcceEEEEEEeCCCEEEEEecc-CCHHHHHHHHH
Q psy6080         108 KLDVK----KMFAVWRVDPPWLPVTKKGL---------GSRMGGGKGSIDHYVTPVKTGRIIIEVGGK-CSYEEVLPYLR  173 (240)
Q Consensus       108 ~L~kk----k~~~iwirv~P~~pvTkK~~---------gtRMGkGKG~i~~~varVk~G~iIfEi~g~-~~~~~ak~aLk  173 (240)
                      +|.+.    .+|++|||+|||+|||+||+         ++|||+|||++++|||+|++|+||||+.|. .+++.|++||+
T Consensus        72 ~l~k~~G~~~~~~~~irvfP~~~v~~kp~~~~agadrl~~~Mg~gkG~p~~~aArVk~G~ilfei~~~~~~~~~akeALr  151 (163)
T d1vqoh1          72 HLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFR  151 (163)
T ss_dssp             HHHHHHCTTCSCEEEECCCCCEEEEECC-----------CCSTTCCCEEEEEEEEECTTCEEEEEEECSTTHHHHHHHHH
T ss_pred             hhhhhcCccccceEEEEecCcceeecChhhhhcccccccccccCCCCCccEEEEEECCCCEEEEEEeccccHHHHHHHHH
Confidence            99752    36899999999999999996         899999999999999999999999999995 46788999999


Q ss_pred             HccccCCcceEE
Q psy6080         174 SCASKMPFKCMP  185 (240)
Q Consensus       174 ~aa~KLP~k~ki  185 (240)
                      +|++|||++|+|
T Consensus       152 ~A~~KLP~~tkI  163 (163)
T d1vqoh1         152 RAYNKITPSCRI  163 (163)
T ss_dssp             HHGGGSSSCEEE
T ss_pred             HHhccCCCceEC
Confidence            999999999986

>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L10e
domain: Ribosomal protein L10e
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-35  Score=238.36  Aligned_cols=108  Identities=19%  Similarity=0.168  Sum_probs=81.1

Q ss_pred             EeEEEEEeeCcccchhhHHHHHHHHhccccc---ccceEEEEEcCCCCceecCCCcccCC---------CCCCcceEEEE
Q psy6080          81 KQYGLVALSGGRMNYRHFETIRFAMMRKLDV---KKMFAVWRVDPPWLPVTKKGLGSRMG---------GGKGSIDHYVT  148 (240)
Q Consensus        81 G~yGL~ale~G~It~~qlEaaR~~InR~L~k---kk~~~iwirv~P~~pvTkK~~gtRMG---------kGKG~i~~~va  148 (240)
                      -...|+++|+++|+++||||||++|+|+|.+   +++|++|||+|||+|||+||+++|||         +|||++++|||
T Consensus         9 ~~~~L~~~e~~~i~~~~iEAaR~ai~r~l~k~~gk~~~~~~irvfP~~~l~~k~~~~~~Gadr~~~gMrkgkG~p~~waA   88 (137)
T d2pa2a1           9 LCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVA   88 (137)
T ss_dssp             EEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC-----------------------------CCEE
T ss_pred             EEEEEEEcCcccccHHHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCcceeecchhccccccccccccccCcCCccEEEE
Confidence            3568999999999999999999999999965   57899999999999999999877777         89999999999


Q ss_pred             EEeCCCEEEEEecc-CCHHHHHHHHHHccccCCcceEEEec
Q psy6080         149 PVKTGRIIIEVGGK-CSYEEVLPYLRSCASKMPFKCMPCNE  188 (240)
Q Consensus       149 rVk~G~iIfEi~g~-~~~~~ak~aLk~aa~KLP~k~kiV~~  188 (240)
                      +|++|+||||++|. .+.+.|++||++|++|||++|+|+..
T Consensus        89 rVk~G~ilfEi~g~~~~~~~Ak~ALr~Aa~KLP~~tkIvv~  129 (137)
T d2pa2a1          89 RVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHIS  129 (137)
T ss_dssp             EECTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEE
T ss_pred             EecCCcEEEEEeecccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence            99999999999985 56788999999999999999998754