Psyllid ID: psy6086

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-----

MSEYWLISAPGDKTCQQTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSAQGGSQHHDSVEIPGLGFGQADYFPYVYYKINIDMLDTKNN

cccEEEEEEcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHccccccccccccccEEEcccEEEEEEEEEcccHHHHHHHHHHcccEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHccccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEEcccccccc

ccEEEEEEccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHcccHHHcEEccHHHEEEEEEEcHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHcccHHHcEEccHHHEEEEEEccHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEEEEEccccc

mseywlisapgdktcqQTWENLNNVTSkqnnlsenykfhipdlkvgtldqlvglsddlgkldtfvdsvtvgtLDQLvglsddlgkldtfvDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWdmakypikQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAmivprssqlvsqdQDFALYTVTLFKKVQDEFRHHAREKKFIVREfvyneeelaagKNEITKLVTDkkkqfgyatnslpflssdelGNYITQFQWdmakypikQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAmivprssqlvsqdQDFALYTVTLFKKVQDEFRHHAREKKYALNsfilphsfgpLVRWLKVNFSECFCAWIHVKALRVFVESVLRyglpvnfqamllhpnkknTKRLRDVLQQLYGhldssaqggsqhhdsveipglgfgqadyfpyvYYKINIDMLDTKNN

mseywlisapgdktcqQTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHArekkfivrefvyneeelaagkneitklvtdkKKQFGYATnslpflssdeLGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSAQGGSQHHDSVEIPGLGFGQADYFPYVYYKINIDMLDTKNN

MSEYWLISAPGDKTCQQTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKlaenlmannnelgnYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSAQGGSQHHDSVEIPGLGFGQADYFPYVYYKINIDMLDTKNN

***YWLISAPGDKTCQQTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEAD*************************LLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEAD*************************LLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHL*************VEIPGLGFGQADYFPYVYYKINIDML*****

MSEYWLISAPGDKTCQQTWE**NNVTS**NNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLE*****LAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYN****************LLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEE*******************FGYATNSLPFLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYN****************LLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPN*K**KRLRDVLQQLYGHL*******************GFGQADYFPYVYYKINIDMLDTK**

*SEYWLISAPGDKTCQQTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSA***********IPGLGFGQADYFPYVYYKINIDMLDT***

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MSEYWLISAPGDKTCQQTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADxxxxxxxxxxxxxxxxxxxxxQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADxxxxxxxxxxxxxxxxxxxxxQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSAQGGSQHHDSVEIPGLGFGQADYFPYVYYKINIDMLDTKNN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		585	2.2.26 [Sep-21-2011]
Q9U5N1		385	V-type proton ATPase subu	N/A	N/A	0.471	0.716	0.738	1e-123
Q9V7N5		836	V-type proton ATPase subu	no	N/A	0.463	0.324	0.687	1e-116
Q7T385		383	V-type proton ATPase subu	yes	N/A	0.473	0.723	0.602	1e-102
Q5XH14		382	V-type proton ATPase subu	N/A	N/A	0.473	0.725	0.599	1e-101
Q6P4Y9		382	V-type proton ATPase subu	yes	N/A	0.473	0.725	0.599	1e-101
Q5RDQ7		382	V-type proton ATPase subu	yes	N/A	0.473	0.725	0.596	3e-99
Q4R5H9		382	V-type proton ATPase subu	N/A	N/A	0.473	0.725	0.596	3e-99
P21283		382	V-type proton ATPase subu	yes	N/A	0.473	0.725	0.596	3e-99
P21282		382	V-type proton ATPase subu	yes	N/A	0.473	0.725	0.592	3e-99
Q9Z1G3		382	V-type proton ATPase subu	yes	N/A	0.473	0.725	0.592	3e-99

>sp\|Q9U5N1\|VATC_MANSE V-type proton ATPase subunit C OS=Manduca sexta PE=2 SV=1	Back alignment and function desciption

 Score =  444 bits (1141), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/302 (73%), Positives = 247/302 (81%), Gaps = 26/302 (8%)

Query: 1   MSEYWLISAPGDKTCQQTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGK 60
           MSEYWLISAPGDKTCQQTWE LN  T K NNLS NYKF IPDLKVGTLD           
Sbjct: 1   MSEYWLISAPGDKTCQQTWEALNQAT-KANNLSLNYKFPIPDLKVGTLD----------- 48

Query: 61  LDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANN 120
                         QLVGLSDDLGKLDTFV+ VT KVA YLGEVLEDQRDKL ENL ANN
Sbjct: 49  --------------QLVGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLTANN 94

Query: 121 NELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEK 180
           ++L +Y+T+FQWDMAKYPIKQSLRNIADII+KQ+GQI+ADLK KSSAYN LK NLQN+EK
Sbjct: 95  DDLPHYLTRFQWDMAKYPIKQSLRNIADIISKQVGQIDADLKVKSSAYNALKGNLQNLEK 154

Query: 181 KQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQL 240
           KQTGSLLTRNLADLVKKEHFILDSEYLTTLLV+VP++   +W  NYEK+T MIVPRS+QL
Sbjct: 155 KQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNANYEKITDMIVPRSTQL 214

Query: 241 VSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQ 300
           + QD D+ L+TVTLFKKV DEF+ HARE+KF+VREF YNE +L AGKNEITKL+TDKKKQ
Sbjct: 215 IHQDGDYGLFTVTLFKKVVDEFKLHARERKFVVREFAYNEADLVAGKNEITKLLTDKKKQ 274

Query: 301 FG 302
           FG
Sbjct: 275 FG 276

Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Manduca sexta (taxid: 7130)

>sp\|Q9V7N5\|VATC_DROME V-type proton ATPase subunit C OS=Drosophila melanogaster GN=Vha44 PE=2 SV=5	Back alignment and function description

>sp\|Q7T385\|VTC1A_DANRE V-type proton ATPase subunit C 1-A OS=Danio rerio GN=atp6v1c1a PE=2 SV=1	Back alignment and function description

>sp\|Q5XH14\|VATC1_XENLA V-type proton ATPase subunit C 1 OS=Xenopus laevis GN=atp6v1c1 PE=2 SV=1	Back alignment and function description

>sp\|Q6P4Y9\|VATC1_XENTR V-type proton ATPase subunit C 1 OS=Xenopus tropicalis GN=atp6v1c1 PE=2 SV=1	Back alignment and function description

>sp\|Q5RDQ7\|VATC1_PONAB V-type proton ATPase subunit C 1 OS=Pongo abelii GN=ATP6V1C1 PE=2 SV=1	Back alignment and function description

>sp\|Q4R5H9\|VATC1_MACFA V-type proton ATPase subunit C 1 OS=Macaca fascicularis GN=ATP6V1C1 PE=2 SV=1	Back alignment and function description

>sp\|P21283\|VATC1_HUMAN V-type proton ATPase subunit C 1 OS=Homo sapiens GN=ATP6V1C1 PE=1 SV=4	Back alignment and function description

>sp\|P21282\|VATC1_BOVIN V-type proton ATPase subunit C 1 OS=Bos taurus GN=ATP6V1C1 PE=1 SV=3	Back alignment and function description

>sp\|Q9Z1G3\|VATC1_MOUSE V-type proton ATPase subunit C 1 OS=Mus musculus GN=Atp6v1c1 PE=1 SV=4	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		585
170030920		528	vacuolar ATP synthase subunit C [Culex q	0.868	0.962	0.516	1e-160
193702420		387	PREDICTED: v-type proton ATPase subunit	0.473	0.715	0.788	1e-132
134141801		386	vacuolar ATPase subunit C [Lutzomyia lon	0.589	0.893	0.630	1e-130
189238960		386	PREDICTED: similar to AGAP005845-PA [Tri	0.569	0.862	0.633	1e-128
332016566		386	V-type proton ATPase subunit C [Acromyrm	0.572	0.867	0.634	1e-127
307201130		388	Vacuolar proton pump subunit C [Harpegna	0.576	0.868	0.622	1e-127
158294869		385	AGAP005845-PA [Anopheles gambiae str. PE	0.473	0.719	0.745	1e-126
289740295		387	vacuolar H+-ATPase v1 sector subunit C [	0.473	0.715	0.738	1e-125
17137392		388	vacuolar H[+] ATPase 44kD C subunit, iso	0.558	0.842	0.631	1e-125
340713809		406	PREDICTED: v-type proton ATPase subunit	0.570	0.822	0.606	1e-124

>gi\|170030920\|ref\|XP_001843335.1\| vacuolar ATP synthase subunit C [Culex quinquefasciatus] gi\|167868815\|gb\|EDS32198.1\| vacuolar ATP synthase subunit C [Culex quinquefasciatus]	Back alignment and taxonomy information

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 311/602 (51%), Positives = 385/602 (63%), Gaps = 94/602 (15%)

Query: 1   MSEYWLISAPGDKTCQQTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGK 60
           MSEYWLISAPGDKTCQQTWE +NN+TSKQNNL EN+KFHIPDLKVGTLD           
Sbjct: 1   MSEYWLISAPGDKTCQQTWETMNNLTSKQNNLCENFKFHIPDLKVGTLD----------- 49

Query: 61  LDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANN 120
                         QLVGLSDDLGKLD +V+  T K+A YLG+VLEDQRDKL ENL ANN
Sbjct: 50  --------------QLVGLSDDLGKLDAYVEQSTRKIASYLGDVLEDQRDKLYENLQANN 95

Query: 121 NELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEK 180
           NE+     QF       P  Q+  N  + + +Q   ++       S   N  S   + + 
Sbjct: 96  NEVDPDEIQF----CNSPSSQN--NSCEQLQRQRSCVD-----DCSHGTNSPSCCCSQKT 144

Query: 181 KQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQL 240
           + + S   R+ AD               +L  V PR+            + +  P + ++
Sbjct: 145 RSSASGSERD-AD---------------SLACVYPRSG-----------SVIDSPVTIEV 177

Query: 241 VSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQ 300
             Q  + + + V             +R++ + +   V   +     + E+ +   D +  
Sbjct: 178 TEQTSNISGHDVQTKSSNGPSISFGSRKRSYSINCNVLTPD----AETEVDR--EDHESS 231

Query: 301 FGYATNSLPFLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSA 360
           F +      +    +L  YIT+FQWD+AKYP KQSLRNIADII+KQ+GQI+ADLKTKS+A
Sbjct: 232 FEW------WFHRHDLTTYITRFQWDLAKYPTKQSLRNIADIISKQVGQIDADLKTKSAA 285

Query: 361 YNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYE 420
           YNNLK NLQN+EKKQTGSLLTRNLADLVK+EHFILDSEYLTTLLV+VP+  + +W  NYE
Sbjct: 286 YNNLKGNLQNLEKKQTGSLLTRNLADLVKREHFILDSEYLTTLLVIVPKQMINDWNVNYE 345

Query: 421 KLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHS------ 474
           K+T MIVPRSSQ+++QD D+AL TVTLFKKV DEF+ HARE+K+ +  F           
Sbjct: 346 KITDMIVPRSSQMITQDNDYALCTVTLFKKVVDEFKLHARERKFVVREFTYNEEELAAGK 405

Query: 475 -------------FGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLH 521
                        FGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQA+L+H
Sbjct: 406 NEITKLVTDKKKQFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAILIH 465

Query: 522 PNKKNTKRLRDVLQQLYGHLDSSAQGGSQHHDSVEIPGLGFGQADYFPYVYYKINIDMLD 581
           PNKKNTKRLRDVL QLYGHLD SA     + D+V+IPGLGFGQ++Y+PYVYYK+NIDM++
Sbjct: 466 PNKKNTKRLRDVLNQLYGHLDGSAASSGGNADNVDIPGLGFGQSEYYPYVYYKLNIDMVE 525

Query: 582 TK 583
            K
Sbjct: 526 NK 527

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|193702420\|ref\|XP_001946227.1\| PREDICTED: v-type proton ATPase subunit C-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|134141801\|gb\|ABO61291.1\| vacuolar ATPase subunit C [Lutzomyia longipalpis]	Back alignment and taxonomy information

>gi\|189238960\|ref\|XP_001814187.1\| PREDICTED: similar to AGAP005845-PA [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|332016566\|gb\|EGI57447.1\| V-type proton ATPase subunit C [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|307201130\|gb\|EFN81041.1\| Vacuolar proton pump subunit C [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|158294869\|ref\|XP_315870.4\| AGAP005845-PA [Anopheles gambiae str. PEST] gi\|157015765\|gb\|EAA11948.4\| AGAP005845-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|289740295\|gb\|ADD18895.1\| vacuolar H+-ATPase v1 sector subunit C [Glossina morsitans morsitans]	Back alignment and taxonomy information

>gi|17137392|ref|NP_477266.1| vacuolar H[+] ATPase 44kD C subunit, isoform A [Drosophila melanogaster] gi|19549828|ref|NP_599140.1| vacuolar H[+] ATPase 44kD C subunit, isoform B [Drosophila melanogaster] gi|195334907|ref|XP_002034118.1| GM20063 [Drosophila sechellia] gi|195583914|ref|XP_002081761.1| GD25545 [Drosophila simulans] gi|7302940|gb|AAF58011.1| vacuolar H[+] ATPase 44kD C subunit, isoform A [Drosophila melanogaster] gi|16768734|gb|AAL28586.1| HL07758p [Drosophila melanogaster] gi|20976860|gb|AAM27505.1| LD12844p [Drosophila melanogaster] gi|21627124|gb|AAM68515.1| vacuolar H[+] ATPase 44kD C subunit, isoform B [Drosophila melanogaster] gi|194126088|gb|EDW48131.1| GM20063 [Drosophila sechellia] gi|194193770|gb|EDX07346.1| GD25545 [Drosophila simulans] gi|220943182|gb|ACL84134.1| Vha44-PA [synthetic construct] gi|220953390|gb|ACL89238.1| Vha44-PA [synthetic construct]

Back alignment and taxonomy information

>gi\|340713809\|ref\|XP_003395428.1\| PREDICTED: v-type proton ATPase subunit C-like [Bombus terrestris]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		585
UNIPROTKB\|F1NK97		386	ATP6V1C2 "Uncharacterized prot	0.406	0.616	0.554	2.4e-108
FB\|FBgn0262511		836	Vha44 "Vacuolar H[+] ATPase 44	0.302	0.211	0.796	7.2e-109
UNIPROTKB\|Q8NEY4		427	ATP6V1C2 "V-type proton ATPase	0.396	0.543	0.504	2.3e-99
MGI\|MGI:1916025		427	Atp6v1c2 "ATPase, H+ transport	0.396	0.543	0.504	1.4e-99
RGD\|1359430		425	Atp6v1c2 "ATPase, H+ transport	0.396	0.545	0.508	1.1e-99
UNIPROTKB\|E2R1R2		427	ATP6V1C2 "Uncharacterized prot	0.396	0.543	0.504	7.6e-99
UNIPROTKB\|F1SAA2		427	ATP6V1C2 "Uncharacterized prot	0.396	0.543	0.5	3.3e-98
UNIPROTKB\|A4IFJ9		427	ATP6V1C2 "ATP6V1C2 protein" [B	0.396	0.543	0.5	6.8e-98
ZFIN\|ZDB-GENE-041010-104		381	atp6v1c1b "ATPase, H+ transpor	0.423	0.650	0.570	5.9e-73
ZFIN\|ZDB-GENE-030616-612		383	atp6v1c1a "ATPase, H+ transpor	0.437	0.668	0.584	1.9e-76

UNIPROTKB\|F1NK97 ATP6V1C2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

 Score = 720 (258.5 bits), Expect = 2.4e-108, Sum P(2) = 2.4e-108
 Identities = 132/238 (55%), Positives = 182/238 (76%)

Query:    65 VDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKXXXXXXXXXXXXX 124
             +  + VGTLD LVGLSD+LGKLDTF +SV  K+  Y+GEV+ED +DK             
Sbjct:    43 IPDLKVGTLDALVGLSDELGKLDTFAESVIKKIVQYIGEVMEDSKDKVQENLLANGVDLI 102

Query:   125 XYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTG 184
              Y+T+F+WDMAKYPIKQ L+NI++ + KQ+ QIEADLKT+S+AYNN+K NLQN+EKK  G
Sbjct:   103 SYLTRFEWDMAKYPIKQPLKNISEALAKQVTQIEADLKTRSAAYNNIKGNLQNLEKKTVG 162

Query:   185 SLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQD 244
             +LLTR LAD+V KE F+L+SEYL TLLVVVP++   +W + YE L+ M+VPRS++++++D
Sbjct:   163 NLLTRTLADIVHKEDFVLNSEYLITLLVVVPKSSYVQWQKTYESLSDMVVPRSTKMIAED 222

Query:   245 QDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFG 302
              +  L+TVTLF+KV D+F+  ARE +F+VREF ++E+EL   K E+ KL +DKK+Q+G
Sbjct:   223 AEGGLFTVTLFRKVMDDFKAKARENRFMVREFYFDEKELKCEKEELMKLASDKKQQYG 280

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033180 "proton-transporting V-type ATPase, V1 domain" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

FB\|FBgn0262511 Vha44 "Vacuolar H[+] ATPase 44kD subunit" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8NEY4 ATP6V1C2 "V-type proton ATPase subunit C 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1916025 Atp6v1c2 "ATPase, H+ transporting, lysosomal V1 subunit C2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1359430 Atp6v1c2 "ATPase, H+ transporting, lysosomal V1 subunit C2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R1R2 ATP6V1C2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SAA2 ATP6V1C2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|A4IFJ9 ATP6V1C2 "ATP6V1C2 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041010-104 atp6v1c1b "ATPase, H+ transporting, lysosomal, V1 subunit C, isoform 1b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030616-612 atp6v1c1a "ATPase, H+ transporting, lysosomal, V1 subunit C, isoform 1a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P4Y9	VATC1_XENTR	No assigned EC number	0.5993	0.4735	0.7251	yes	N/A
Q9XXU9	VATC_CAEEL	No assigned EC number	0.5149	0.4666	0.7109	yes	N/A
Q7T385	VTC1A_DANRE	No assigned EC number	0.6026	0.4735	0.7232	yes	N/A
P21283	VATC1_HUMAN	No assigned EC number	0.5960	0.4735	0.7251	yes	N/A
P21282	VATC1_BOVIN	No assigned EC number	0.5927	0.4735	0.7251	yes	N/A
Q5FVI6	VATC1_RAT	No assigned EC number	0.5927	0.4735	0.7251	yes	N/A
Q9Z1G3	VATC1_MOUSE	No assigned EC number	0.5927	0.4735	0.7251	yes	N/A
Q5RDQ7	VATC1_PONAB	No assigned EC number	0.5960	0.4735	0.7251	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		585
pfam03223		371	pfam03223, V-ATPase_C, V-ATPase subunit C	1e-133
pfam03223		371	pfam03223, V-ATPase_C, V-ATPase subunit C	1e-121
COG5127		383	COG5127, COG5127, Vacuolar H+-ATPase V1 sector, su	7e-56
COG5127		383	COG5127, COG5127, Vacuolar H+-ATPase V1 sector, su	6e-46

>gnl\|CDD\|217433 pfam03223, V-ATPase_C, V-ATPase subunit C	Back alignment and domain information

 Score =  392 bits (1009), Expect = e-133
 Identities = 152/303 (50%), Positives = 205/303 (67%), Gaps = 28/303 (9%)

Query: 4   YWLISAPGDKTCQ---QTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGK 60
           YWL+S P  KT     Q W+ L  V+S  +NLS   KF+IPDLKVGTLD LV LSD+LGK
Sbjct: 1   YWLVSLPVLKTDSQANQIWKELLLVSSLGSNLSNVSKFNIPDLKVGTLDSLVTLSDELGK 60

Query: 61  LDTFVDSVTVGTLDQLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANN 120
           LDT V+ V                           K+   L E+LEDQ  KL+  L  N+
Sbjct: 61  LDTQVEGVL-------------------------KKIERILRELLEDQGGKLSSTLRVND 95

Query: 121 NELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEK 180
             L  Y+T+FQWD AKYP KQSL+ + D+++K++ QI+ DL++KS+ YNN KSNL  +E+
Sbjct: 96  VSLDQYLTRFQWDSAKYPTKQSLKELVDLLSKEVAQIDNDLRSKSAEYNNAKSNLAALER 155

Query: 181 KQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQL 240
           KQTG+L  R+LAD+VK E F+LDSEYLTT+LV VP+N V +++ +YE L+ M+VPRS+++
Sbjct: 156 KQTGNLSVRSLADIVKPEDFVLDSEYLTTVLVAVPKNSVKDFLASYETLSDMVVPRSAKV 215

Query: 241 VSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQ 300
           +++D ++AL+TVTLFKKV ++F+   REKKFIVR+F Y+EE     K E TKL TD+KKQ
Sbjct: 216 IAEDDEYALFTVTLFKKVVEDFKTKCREKKFIVRDFKYSEELSEEEKRERTKLATDEKKQ 275

Query: 301 FGY 303
            G 
Sbjct: 276 EGA 278

Length = 371

>gnl\|CDD\|217433 pfam03223, V-ATPase_C, V-ATPase subunit C	Back alignment and domain information

>gnl\|CDD\|227456 COG5127, COG5127, Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|227456 COG5127, COG5127, Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		585
KOG2909\|consensus		381		100.0
PF03223		371	V-ATPase_C: V-ATPase subunit C; InterPro: IPR00490	100.0
COG5127		383	Vacuolar H+-ATPase V1 sector, subunit C [Energy pr	100.0
PF03223		371	V-ATPase_C: V-ATPase subunit C; InterPro: IPR00490	100.0
KOG2909\|consensus		381		100.0
COG5127		383	Vacuolar H+-ATPase V1 sector, subunit C [Energy pr	100.0
PRK05771		646	V-type ATP synthase subunit I; Validated	96.47
PRK05771		646	V-type ATP synthase subunit I; Validated	94.79
PF01496		759	V_ATPase_I: V-type ATPase 116kDa subunit family ;	86.5
PF01496		759	V_ATPase_I: V-type ATPase 116kDa subunit family ;	83.54

>KOG2909\|consensus	Back alignment and domain information

Probab=100.00  E-value=2.1e-122  Score=942.38  Aligned_cols=379  Identities=62%  Similarity=1.022  Sum_probs=369.4

Q ss_pred             CccEEEEeeCCCCC-hHHHHHHHhhhhccCCCCCccccccCCCCCCcChhhhhhcccccCCCCccccccccccccccccc
Q psy6086           1 MSEYWLISAPGDKT-CQQTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQLVGL   79 (585)
Q Consensus         1 ~~~ywLvS~P~~~~-~~~~~~~L~~~~~~~~~~s~~~~f~iP~lKvGTLDsLv~lSDd~~~~~~~~~~~~~~~~~~~~~~   79 (585)
                      |++|||||+|++++ ++++|++++..+++++++|.+++|+||+|||||||+||++||+                      
T Consensus         1 Ms~fwliSlP~~~~~~~~~~d~i~~~~sk~s~~~~vs~F~IP~fkvgsLD~Lv~~se~----------------------   58 (381)
T KOG2909|consen    1 MSEFWLISLPGEKTGNQQTWDRINDLTSKRSNLSTVSKFNIPDFKVGSLDVLVGLSEE----------------------   58 (381)
T ss_pred             CcceEEEeCCcCCcccccHHHHHHHHHhccccccccccccCCCcccccHHHHHHHHHH----------------------
Confidence            89999999999877 8999999999999998899999999999999999999999999                      


Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHhhhhhhHHHhhhhhhcCCcCHHhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy6086          80 SDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEA  159 (585)
Q Consensus        80 ~~~L~K~D~~ve~v~~Ki~~~~~~v~e~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKYp~~~~L~elv~~i~k~v~~id~  159 (585)
                         |+|+|++||++++||++|+++++++.++++.+++++||+|+.+|+++|+||+||||+++||++++++|++++++||+
T Consensus        59 ---L~Kld~~~e~~i~ki~~~~~~~le~~s~~~~~~l~~n~~~~~ey~t~F~Wd~akf~~~~si~~iid~I~~e~~qie~  135 (381)
T KOG2909|consen   59 ---LGKLDTFVEGLIKKIAGYLKEVLEDSSGKVGENLMANGVPLPEYLTRFQWDMAKFPTNQSIKEIIDLISKEIAQIEN  135 (381)
T ss_pred             ---HhhHHHHHHHHHHHHHHHHHHHHhhcccchhhceeeCCcCHHHHHhHheehhhhccccccHHHHHHHHHHHHHHHHH
Confidence               99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccccccccCcccCCCCCccccCCcceEEEEEecCCChHHHHHhhhhcCCccccCCcc
Q psy6086         160 DLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQ  239 (585)
Q Consensus       160 dlK~k~s~Yn~~K~~L~~~~RK~~GnL~~rsL~dvV~~edfV~dSEyLtTllVvVPk~~~kewl~~YEtLt~~VVPRSs~  239 (585)
                      |+|+|+++||++|++||+++||++|||++|||++||+|||||+|||||+||+|||||+.++||+++||||++||||||++
T Consensus       136 Dlk~r~a~yn~ak~nl~nlerK~~GsL~~rsL~~IVk~edfvl~SEyL~tllVvVPK~~~~df~~~YEtlsd~VvPrSsk  215 (381)
T KOG2909|consen  136 DLKTRAAAYNNAKGNLQNLERKKTGSLSTRSLADIVKKEDFVLDSEYLTTLLVVVPKALVKDFLKSYETLSDMVVPRSSK  215 (381)
T ss_pred             HHHHHHHHHHhHHHHHHHHhhhccCChhhhhHHHhCCchhhccchhhheeEEEEeeccchHHHHHHHHhhccccchhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeEEEEEecccHHHHHHHHHHCCCeeeecccCHHHHHhchHHHHHHHHHHhhhcCcccCCCCCCCcchhhhh
Q psy6086         240 LVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDELGNY  319 (585)
Q Consensus       240 ~I~eD~e~~Ly~VtlFKk~~deF~~~aRekkfiVRdF~ydee~~~~~~~e~~~l~~~~k~~~~~~t~s~~~~~~~~~~~y  319 (585)
                      +|.||+||.||+||||||++|+|+++|||+||+||||.|++++++++++|++++++++++|+                  
T Consensus       216 ki~eD~Ey~Lf~V~lFkk~~edFr~~ArE~kF~vRdF~y~ee~~e~~k~E~~ra~~~~k~~~------------------  277 (381)
T KOG2909|consen  216 KINEDAEYVLFTVTLFKKVAEDFRTKAREKKFIVRDFDYNEEEIETEKAEMDRAATDKKSMR------------------  277 (381)
T ss_pred             hcccccceEEEEEEEeehhHHHHHHHHHHcCCceeeccccHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence            99999999999999999999999999999999999999999999999999999999999998                  


Q ss_pred             hhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCccccccccccccccccccccc
Q psy6086         320 ITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEY  399 (585)
Q Consensus       320 i~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~~e~~~~dte~  399 (585)
                                                                                                      
T Consensus       278 --------------------------------------------------------------------------------  277 (381)
T KOG2909|consen  278 --------------------------------------------------------------------------------  277 (381)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhccccccCCCccchHH
Q psy6086         400 LTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFGPLV  479 (585)
Q Consensus       400 L~t~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f~~~~~~~~L~  479 (585)
                                                                                                  +.|+
T Consensus       278 ----------------------------------------------------------------------------~~Ll  281 (381)
T KOG2909|consen  278 ----------------------------------------------------------------------------GPLL  281 (381)
T ss_pred             ----------------------------------------------------------------------------HHHH
Confidence                                                                                        9999


Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q psy6086         480 RWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSAQGGSQHHDSVEIPG  559 (585)
Q Consensus       480 r~~~~~fse~f~awiHlKalRvFVESVLRYGLP~~f~a~~i~p~~k~~kkl~~~L~~~~~~l~~~~~~~~~~~~~~~~~~  559 (585)
                      |||++||||+|++|||||||||||||||||||||+|++++++|++|+.+|++.+|.+.||||++++.+  ..|++.++||
T Consensus       282 r~~kv~fsEvF~~wiHiKaLRvfVESVlRYGLP~~F~a~~~~p~kKs~~k~r~iL~~~~~~ld~~~~~--~~da~~~~~g  359 (381)
T KOG2909|consen  282 RWLKVNFSEVFIAWIHIKALRVFVESVLRYGLPPNFQAVLLQPNKKSEKKLRSILISLYGHLDSNAAA--VYDASVDIPG  359 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchheeeecCCchhHHHHHHHHHHHhccccccchh--hccccccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999998762  3456688999


Q ss_pred             CCCCCCcccceEEEEEeecccc
Q psy6086         560 LGFGQADYFPYVYYKINIDMLD  581 (585)
Q Consensus       560 ~~~~~~~~~pyV~~~i~~~~~~  581 (585)
                      +++ |+||+|||+|+|++.+++
T Consensus       360 lnl-d~ey~PfV~~~I~~~~~e  380 (381)
T KOG2909|consen  360 LNL-DEEYFPFVFFTINLYGEE  380 (381)
T ss_pred             CCC-CCceeeEEEEEecccccc
Confidence            885 589999999999999876

>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]	Back alignment and domain information

>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG2909\|consensus	Back alignment and domain information

>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]	Back alignment and domain information

>PRK05771 V-type ATP synthase subunit I; Validated	Back alignment and domain information

>PRK05771 V-type ATP synthase subunit I; Validated	Back alignment and domain information

>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		585
1u7l_A		392	Crystal Structure Of Subunit C (Vma5p) Of The Yeast		9e-43
4dl0_I		130	Crystal Structure Of The Heterotrimeric Egchead Per		2e-23
4dl0_I		130	Crystal Structure Of The Heterotrimeric Egchead Per		2e-19

>pdb|1U7L|A Chain A, Crystal Structure Of Subunit C (Vma5p) Of The Yeast V-Atpase Length = 392

Back alignment and structure

Iteration: 1

Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 99/304 (32%), Positives = 165/304 (54%), Gaps = 37/304 (12%) Query: 304 ATNSLPFLSSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNN 363 A +LP +++ + Y+ FQW K+ + +S++++ +I+ + Q++AD++ + YN+ Sbjct: 96 AYRTLP-INNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNS 154 Query: 364 LKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLT 423 K+NL E+K+TG L R+L D+VK E F+L+SE+LTT+LV VP++ +++ ++YE L+ Sbjct: 155 AKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLS 214 Query: 424 AMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFG------- 476 +VP S+ ++++D ++ L+ V LFKK EF AREKK+ +P F Sbjct: 215 KNVVPASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKF------IPREFNYSEELID 268 Query: 477 ------------------PLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAM 518 LVR K + + F W H+KALRV+VESVLRYGLP +F Sbjct: 269 QLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIK 328 Query: 519 LLHPNKKNTKRLRDVLQQLYGHLDSSA-----QGGSQHHDSVEIPGLGFGQADYFPYVYY 573 ++ KN + + L +G L +A +G D+ +Y P+V Y Sbjct: 329 IIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMY 388 Query: 574 KINI 577 IN+ Sbjct: 389 IINL 392

PyMOL of 1u7l

>pdb|4DL0|I Chain I, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 130

Back alignment and structure

>pdb|4DL0|I Chain I, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 130

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		585
1u7l_A		392	Vacuolar ATP synthase subunit C; hydrolase, struct	1e-112
1u7l_A		392	Vacuolar ATP synthase subunit C; hydrolase, struct	1e-108
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09

>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1 Length = 392	Back alignment and structure

 Score =  338 bits (869), Expect = e-112
 Identities = 95/290 (32%), Positives = 158/290 (54%), Gaps = 24/290 (8%)

Query: 312 SSDELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNM 371
           ++  +  Y+  FQW   K+ + +S++++  +I+ +  Q++AD++   + YN+ K+NL   
Sbjct: 103 NNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAA 162

Query: 372 EKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSS 431
           E+K+TG L  R+L D+VK E F+L+SE+LTT+LV VP++  +++ ++YE L+  +VP S+
Sbjct: 163 ERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASA 222

Query: 432 QLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILP------------------- 472
            ++++D ++ L+ V LFKK   EF   AREKK+    F                      
Sbjct: 223 SVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQ 282

Query: 473 HSFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRD 532
                LVR  K  + + F  W H+KALRV+VESVLRYGLP +F   ++    KN  + + 
Sbjct: 283 SLRVQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKS 342

Query: 533 VLQQLYGHLDSSA-----QGGSQHHDSVEIPGLGFGQADYFPYVYYKINI 577
            L   +G L  +A     +G     D+           +Y P+V Y IN+
Sbjct: 343 ELIDAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMYIINL 392

PyMOL of 1u7l

>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1 Length = 392	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		585
1u7l_A		392	Vacuolar ATP synthase subunit C; hydrolase, struct	100.0
1u7l_A		392	Vacuolar ATP synthase subunit C; hydrolase, struct	100.0
3rrk_A		357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	95.55
3rrk_A		357	V-type ATPase 116 kDa subunit; alpha beta fold, pr	91.62

>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1	Back alignment and structure

Probab=100.00  E-value=3e-122  Score=972.24  Aligned_cols=374  Identities=33%  Similarity=0.562  Sum_probs=343.0

Q ss_pred             ccEEEEeeCCCCChH----HHHHH-HhhhhccCCCCCccccccCCCCCCcChhhhhhcccccCCCCcccccccccccccc
Q psy6086           2 SEYWLISAPGDKTCQ----QTWEN-LNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLDQL   76 (585)
Q Consensus         2 ~~ywLvS~P~~~~~~----~~~~~-L~~~~~~~~~~s~~~~f~iP~lKvGTLDsLv~lSDd~~~~~~~~~~~~~~~~~~~   76 (585)
                      ++|||||+|.++++.    ++|+. |+..+++  +.+.+++|+||+|||||||+||+||||                   
T Consensus         9 ~~y~LvSlP~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~f~IP~lkvGTLDsLv~lsDd-------------------   67 (392)
T 1u7l_A            9 NDFILISLPQNAQPVTAPGSKTDSWFNETLIG--GRAFVSDFKIPEFKIGSLDTLIVESEE-------------------   67 (392)
T ss_dssp             CEEEEEEEETTCCCTTSTTCCHHHHHHHTGGG--GTSEEEECCCCCCBCSCGGGHHHHHHH-------------------
T ss_pred             CceEEEEccCCCCCCccHHHHHHHHHHhhccC--CCCccccccCCCCCccCHHHHHHHHHH-------------------
Confidence            579999999876555    89998 8876663  367889999999999999999999999                   


Q ss_pred             cccccchhhhhhhHHHHHHHHHHHHHhhhhhhHHHhhhhhhcCCcCHHhhhhhcccccccCCCCCCHHHHHHHHHHHHHH
Q psy6086          77 VGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQ  156 (585)
Q Consensus        77 ~~~~~~L~K~D~~ve~v~~Ki~~~~~~v~e~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKYp~~~~L~elv~~i~k~v~~  156 (585)
                            |+|+|++||++++||+++++++++++++++.+++ +||+|+++||++|+||+||||.++||+||+++|++++++
T Consensus        68 ------L~Kld~~ve~v~~Ki~~~~~~~~~~~~~~~~~~l-vn~~~~~~yl~~F~Wd~aKyp~~~~L~elv~~i~~~v~~  140 (392)
T 1u7l_A           68 ------LSKVDNQIGASIGKIIEILQGLNETSTNAYRTLP-INNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQ  140 (392)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHTTSSCSSSCCSCC-BTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHh-cCCCCHHHHHhhceeccccCCCCCCHHHHHHHHHHHHHH
Confidence                  9999999999999999999999988888888888 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcccccccccCcccCCCCCccccCCcceEEEEEecCCChHHHHHhhhhcCCccccC
Q psy6086         157 IEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPR  236 (585)
Q Consensus       157 id~dlK~k~s~Yn~~K~~L~~~~RK~~GnL~~rsL~dvV~~edfV~dSEyLtTllVvVPk~~~kewl~~YEtLt~~VVPR  236 (585)
                      ||+|+|+|+++||++|++|++++||++|||++|||++||+|||||+|||||||++|||||++++||+++||||++|||||
T Consensus       141 id~dlk~k~~~Yn~~K~~l~~~~RK~~GnL~~rsL~~iV~~edfv~dSEyL~TllVvVPk~~~~dwl~~YEtL~~~VVPr  220 (392)
T 1u7l_A          141 LDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPA  220 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCceeeeeHHHhcCHHHccCccccceEEEEEEeCccHHHHHHHHhhcCCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCceeEEEEEecccHHHHHHHHHHCCCeeeecccCHHHHHhchHHHHHHHHHHhhhcCcccCCCCCCCcchh
Q psy6086         237 SSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSDEL  316 (585)
Q Consensus       237 Ss~~I~eD~e~~Ly~VtlFKk~~deF~~~aRekkfiVRdF~ydee~~~~~~~e~~~l~~~~k~~~~~~t~s~~~~~~~~~  316 (585)
                      ||++|++|+||+||+||||||+++||+++|||+||+||||+|||+.+++.++|+++++++++++|               
T Consensus       221 Ss~~i~~D~ey~L~~VtlFkk~~~eF~~~~Re~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~---------------  285 (392)
T 1u7l_A          221 SASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLR---------------  285 (392)
T ss_dssp             CCEEEEECSSEEEEEEEEEGGGHHHHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred             hhhhhhcCCCceEEEEEEEhhhHHHHHHHHHHcCCccccCcCCHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence            99999999999999999999999999999999999999999999999999999999999999999               


Q ss_pred             hhhhhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCcccccccccccccccccc
Q psy6086         317 GNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILD  396 (585)
Q Consensus       317 ~~yi~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~~e~~~~d  396 (585)
                                                                                                      
T Consensus       286 --------------------------------------------------------------------------------  285 (392)
T 1u7l_A          286 --------------------------------------------------------------------------------  285 (392)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceEEEEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhccccccCCCccc
Q psy6086         397 SEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHSFG  476 (585)
Q Consensus       397 te~L~t~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f~~~~~~~  476 (585)
                                                                                                     +
T Consensus       286 -------------------------------------------------------------------------------~  286 (392)
T 1u7l_A          286 -------------------------------------------------------------------------------V  286 (392)
T ss_dssp             -------------------------------------------------------------------------------H
T ss_pred             -------------------------------------------------------------------------------H
Confidence                                                                                           9


Q ss_pred             hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchhHHHHHHHHHhcCCCCCCCCCCC-----C
Q psy6086         477 PLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSAQGGSQ-----H  551 (585)
Q Consensus       477 ~L~r~~~~~fse~f~awiHlKalRvFVESVLRYGLP~~f~a~~i~p~~k~~kkl~~~L~~~~~~l~~~~~~~~~-----~  551 (585)
                      .|+|||++||||+|++|||||||||||||||||||||+|++++++|++|+++|++++|.++||||++++.+.+.     +
T Consensus       287 ~L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~F~a~li~p~~k~~kKlr~~L~~~f~~l~~~~~~~~~~~~~~~  366 (392)
T 1u7l_A          287 QLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINK  366 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEECTTCHHHHHHHHHHHHGGGGCTTCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhcCCCCcceEEEEEeCCccHHHHHHHHHHHhcccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999987665431     2


Q ss_pred             CCCCCCCCCCCCCCcccceEEEEEee
Q psy6086         552 HDSVEIPGLGFGQADYFPYVYYKINI  577 (585)
Q Consensus       552 ~~~~~~~~~~~~~~~~~pyV~~~i~~  577 (585)
                      +++...+|++++++||||||+|+|++
T Consensus       367 ~d~~~~~~~~~~~~ey~pyV~~~i~~  392 (392)
T 1u7l_A          367 QDTSLHQYASLVDTEYEPFVMYIINL  392 (392)
T ss_dssp             ---------------CCSSEEEEEEC
T ss_pred             ccchhhccccCCCcccceeEEEEEeC
Confidence            33344557777899999999999975

PyMOL of 1u7l

>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1	Back alignment and structure

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}	Back alignment and structure

>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		585
d1u7la_		388	e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Bak	1e-122
d1u7la_		388	e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Bak	1e-120

>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: Vacuolar ATP synthase subunit C
superfamily: Vacuolar ATP synthase subunit C
family: Vacuolar ATP synthase subunit C
domain: Vacuolar ATP synthase subunit C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  364 bits (936), Expect = e-122
 Identities = 95/287 (33%), Positives = 156/287 (54%), Gaps = 24/287 (8%)

Query: 315 ELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKK 374
            +  Y+  FQW   K+ + +S++++  +I+ +  Q++AD++   + YN+ K+NL   E+K
Sbjct: 102 PVPEYLENFQWQTRKFKLDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERK 161

Query: 375 QTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLV 434
           +TG L  R+L D+VK E F+L+SE+LTT+LV VP++  +++ ++YE L+  +VP S+ ++
Sbjct: 162 KTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVVPASASVI 221

Query: 435 SQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILP-------------------HSF 475
           ++D ++ L+ V LFKK   EF   AREKK+    F                         
Sbjct: 222 AEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLR 281

Query: 476 GPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQ 535
             LVR  K  + + F  W H+KALRV+VESVLRYGLP +F   ++    KN  + +  L 
Sbjct: 282 VQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELI 341

Query: 536 QLYGHLDSSA-----QGGSQHHDSVEIPGLGFGQADYFPYVYYKINI 577
             +G L  +A     +G     D+           +Y P+V Y IN+
Sbjct: 342 DAFGFLGGNAFMKDKKGKINKQDTSLHQYASLVDTEYEPFVMYIINL 388

PyMOL of d1u7la_

>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		585
d1u7la_		388	Vacuolar ATP synthase subunit C {Baker's yeast (Sa	100.0
d1u7la_		388	Vacuolar ATP synthase subunit C {Baker's yeast (Sa	100.0

>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Vacuolar ATP synthase subunit C
superfamily: Vacuolar ATP synthase subunit C
family: Vacuolar ATP synthase subunit C
domain: Vacuolar ATP synthase subunit C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.1e-119  Score=941.42  Aligned_cols=372  Identities=34%  Similarity=0.583  Sum_probs=335.1

Q ss_pred             ccEEEEeeCCCCChH-------HHHHHHhhhhccCCCCCccccccCCCCCCcChhhhhhcccccCCCCcccccccccccc
Q psy6086           2 SEYWLISAPGDKTCQ-------QTWENLNNVTSKQNNLSENYKFHIPDLKVGTLDQLVGLSDDLGKLDTFVDSVTVGTLD   74 (585)
Q Consensus         2 ~~ywLvS~P~~~~~~-------~~~~~L~~~~~~~~~~s~~~~f~iP~lKvGTLDsLv~lSDd~~~~~~~~~~~~~~~~~   74 (585)
                      ++|||||+|.+++++       ++|  +.+.+++  +.+.+++|+||+|||||||+||+||||                 
T Consensus         5 ~~y~lvSlP~~~~~~~~~~~~~~~~--l~~~~~~--~~~~~~~f~IP~lKvGTLDsLv~lsDe-----------------   63 (388)
T d1u7la_           5 NDFILISLPQNAQPVTAPGSKTDSW--FNETLIG--GRAFVSDFKIPEFKIGSLDTLIVESEE-----------------   63 (388)
T ss_dssp             CEEEEEEEETTCCCTTSTTCCHHHH--HHHTGGG--GTSEEEECCCCCCBCSCGGGHHHHHHH-----------------
T ss_pred             cceEEEECCCCCCCCCCchhhHHHH--HHhcccC--CCceeeecCCCCCCcccHHHHHHHHHH-----------------
Confidence            689999999876543       344  3333332  235788999999999999999999999                 


Q ss_pred             cccccccchhhhhhhHHHHHHHHHHHHHhhhhhhHHHhhhhhhcCCcCHHhhhhhcccccccCCCCCCHHHHHHHHHHHH
Q psy6086          75 QLVGLSDDLGKLDTFVDSVTHKVAVYLGEVLEDQRDKLAENLMANNNELGNYITQFQWDMAKYPIKQSLRNIADIINKQI  154 (585)
Q Consensus        75 ~~~~~~~~L~K~D~~ve~v~~Ki~~~~~~v~e~~~~~~~~~l~v~~~~~~~Yl~~F~Wd~aKYp~~~~L~elv~~i~k~v  154 (585)
                              |+|+|++||++++||+++++++.++. +++.+++++||+|+++||++|+||+||||.++||+||+++|++++
T Consensus        64 --------L~KlD~~ve~vv~Kv~~~~~~l~~~~-~~~~~~l~v~~~~~~~yl~~F~Wd~aKyp~~~~l~elv~~i~~~~  134 (388)
T d1u7la_          64 --------LSKVDNQIGASIGKIIEILQGLNETS-TNAYRTLPINNMPVPEYLENFQWQTRKFKLDKSIKDLITLISNES  134 (388)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHTTSSC-SSSCCSCCBTTBCHHHHHHTCCCCTTTSCTTSBHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHHHHHHHHHHhccc-hhhhheEeECCccHHHHhhheecccccCCCCCCHHHHHHHHHHHH
Confidence                    99999999999999999999987654 566678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccCcccCCCCCccccCCcceEEEEEecCCChHHHHHhhhhcCCccc
Q psy6086         155 GQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIV  234 (585)
Q Consensus       155 ~~id~dlK~k~s~Yn~~K~~L~~~~RK~~GnL~~rsL~dvV~~edfV~dSEyLtTllVvVPk~~~kewl~~YEtLt~~VV  234 (585)
                      ++||+|+|+|+++||++|++|++++||++|||++|||+|||+|||||+|||||||++|||||++++||+++||+|++|||
T Consensus       135 ~~id~dlk~k~~~Yn~~K~~l~~~~RK~~G~L~~r~L~diV~~ed~V~dSEyLtTllVvVPk~~~~dwl~~YEtL~~~VV  214 (388)
T d1u7la_         135 SQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKSLKSDFEKSYETLSKNVV  214 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTTSCCTTTCCGGGSCCSCSSEEEEEEEEEGGGHHHHHHHGGGSSTTBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCCceeeccHHhhCCHHHhccccccceEEEEEeecccHHHHHHHHhhhcCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccccccCCCceeEEEEEecccHHHHHHHHHHCCCeeeecccCHHHHHhchHHHHHHHHHHhhhcCcccCCCCCCCcc
Q psy6086         235 PRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKFIVREFVYNEEELAAGKNEITKLVTDKKKQFGYATNSLPFLSSD  314 (585)
Q Consensus       235 PRSs~~I~eD~e~~Ly~VtlFKk~~deF~~~aRekkfiVRdF~ydee~~~~~~~e~~~l~~~~k~~~~~~t~s~~~~~~~  314 (585)
                      ||||++|++|+||+||+||+|||++|||+++|||+||+||||.|+|+++++.++|++++++++++||             
T Consensus       215 PrSs~~i~~D~e~~L~~VtlFkk~~~eF~~~aRE~kf~vRdF~y~ee~~~~~~~e~~~l~~~~~~~~-------------  281 (388)
T d1u7la_         215 PASASVIAEDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEELIDQLKKEHDSAASLEQSLR-------------  281 (388)
T ss_dssp             TTCCEEEEECSSEEEEEEEEEGGGHHHHHHHHHHTTCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred             CChhhhceecCCeeEEEEEEEhhhHHHHHHHHHHcCcccccccCCHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999             


Q ss_pred             hhhhhhhhhccccccCCCccchHHHHHHHHHHHHhhHHHHHHhHHHhhhhHHhHhhhhhhccCCcccccccccccccccc
Q psy6086         315 ELGNYITQFQWDMAKYPIKQSLRNIADIINKQIGQIEADLKTKSSAYNNLKSNLQNMEKKQTGSLLTRNLADLVKKEHFI  394 (585)
Q Consensus       315 ~~~~yi~~f~Wd~~ky~~~~~l~~~v~~i~~~v~~l~~~lk~~~~~Y~~~k~~~~~~~rk~~GnL~~~~L~~iv~~e~~~  394 (585)
                                                                                                      
T Consensus       282 --------------------------------------------------------------------------------  281 (388)
T d1u7la_         282 --------------------------------------------------------------------------------  281 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccceEEEEEEeeCcchhHHHHhhhhhccccccCccccccccCcceeeeeeehhhhhHHHHHHHHhhhhccccccCCCc
Q psy6086         395 LDSEYLTTLLVVVPRNQVTEWVQNYEKLTAMIVPRSSQLVSQDQDFALYTVTLFKKVQDEFRHHAREKKYALNSFILPHS  474 (585)
Q Consensus       395 ~dte~L~t~~V~Vpk~~~~df~~sye~l~~~VVP~S~~~i~~D~~~~Ly~V~ifk~~~~~f~~~~re~~~~~r~f~~~~~  474 (585)
                                                                                                      
T Consensus       282 --------------------------------------------------------------------------------  281 (388)
T d1u7la_         282 --------------------------------------------------------------------------------  281 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchhHHHHHHHHHhcCCCCCCCCCCC----
Q psy6086         475 FGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAMLLHPNKKNTKRLRDVLQQLYGHLDSSAQGGSQ----  550 (585)
Q Consensus       475 ~~~L~r~~~~~fse~f~awiHlKalRvFVESVLRYGLP~~f~a~~i~p~~k~~kkl~~~L~~~~~~l~~~~~~~~~----  550 (585)
                       +.|+|||++||||+|++|||||||||||||||||||||+|++++++|++|+++|++++|.+.||||++++.+.+.    
T Consensus       282 -~~L~r~~~~~fse~f~~wiHiKalRvFVESVLRYGLP~~F~~~li~p~~k~~kklr~~L~~~f~~L~~~~~~~~~~~~~  360 (388)
T d1u7la_         282 -VQLVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKI  360 (388)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEECTTCHHHHHHHHHHHHGGGGCTTCC-------
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhcCCCccceEEEEeeCCchHHHHHHHHHHHhhccccccccccccccc
Confidence             999999999999999999999999999999999999999999999999999999999999999999998876321    


Q ss_pred             -CCCCCCCCCCCCCCCcccceEEEEEee
Q psy6086         551 -HHDSVEIPGLGFGQADYFPYVYYKINI  577 (585)
Q Consensus       551 -~~~~~~~~~~~~~~~~~~pyV~~~i~~  577 (585)
                       .++....++.+++|+||||||+|+|++
T Consensus       361 ~~~d~~~~~~~~~~~~ey~PyV~~~i~l  388 (388)
T d1u7la_         361 NKQDTSLHQYASLVDTEYEPFVMYIINL  388 (388)
T ss_dssp             -----------------CCSSEEEEEEC
T ss_pred             CCCcccccccccccCCcccceEEEEecC
Confidence             122333344566899999999999986

PyMOL of d1u7la_

>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure