Psyllid ID: psy6103

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MAEMKHESDDMQCGNHQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHcccccccccccEEEEHHHHHHHHHHHHcccccHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHccHccccEEEEEcccccccccHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEcccccccccccccEEEHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
maemkhesddmqcgnhqnsnskvhEADACLVLANkycqdpdaedAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLlnipswdwkqgddvICLAELKLGFIAqsclapgfsTMMANLFAMRSFKT
Flexible Loop (DISEMBL)
maemkhesddmqcgnHQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Low Complexity Region (SEG)
MAEMKHESDDMQCGNHQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Disordered region (IsUnstruct)
*************************ADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFA******
Disordered Region (DISOPRED)
*************GNHQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANL*AMR****
Disordered Region (DISEMBL)
***************HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Disordered Region (DISPRO)
************CGNHQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEMKHESDDMQCGNHQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q03720	1200	Calcium-activated potassi	yes	N/A	0.832	0.086	1.0	2e-59
Q95V25	1140	Calcium-activated potassi	yes	N/A	0.856	0.093	0.897	5e-54
Q62976	1209	Calcium-activated potassi	yes	N/A	0.864	0.089	0.759	5e-47
Q08460	1209	Calcium-activated potassi	yes	N/A	0.864	0.089	0.759	5e-47
Q8AYS8	1137	Calcium-activated potassi	yes	N/A	0.864	0.094	0.768	8e-47
Q28204	1166	Calcium-activated potassi	yes	N/A	0.864	0.092	0.759	9e-46
O18866	1152	Calcium-activated potassi	yes	N/A	0.864	0.093	0.759	1e-45
O18867	1151	Calcium-activated potassi	yes	N/A	0.864	0.093	0.759	1e-45
Q12791	1236	Calcium-activated potassi	no	N/A	0.864	0.087	0.759	1e-45
Q9BG98	1179	Calcium-activated potassi	no	N/A	0.864	0.091	0.759	1e-45

>sp|Q03720|SLO_DROME Calcium-activated potassium channel slowpoke OS=Drosophila melanogaster GN=slo PE=1 SV=3

 Score =  226 bits (577), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 22  KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
           KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct: 429 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 488

Query: 82  WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 489 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 532

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Kinetics are determined by alternative splicing, phosphorylation status and its combination interaction with Slob and 14-3-3-zeta. While the interaction with Slob1 alone increases its activity, its interaction with both Slob1 and 14-3-3-zeta decreases its activity.
Drosophila melanogaster (taxid: 7227)

>sp|Q95V25|SLO1_CAEEL Calcium-activated potassium channel slo-1 OS=Caenorhabditis elegans GN=slo-1 PE=1 SV=2

 Score =  209 bits (531), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/107 (89%), Positives = 101/107 (94%)

Query: 19  SNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLN 78
           S  K+ +ADACLVLANKY  +PDAEDAANIMRVISIKNYS DIRVI+QLMQYHNKAYLLN
Sbjct: 441 SRVKIGDADACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLLN 500

Query: 79  IPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           IPSWDWK+GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 501 IPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 547

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a central role in synapses by regulating neurotransmitter release.

Caenorhabditis elegans (taxid: 6239)

>sp|Q62976|KCMA1_RAT Calcium-activated potassium channel subunit alpha-1 OS=Rattus norvegicus GN=Kcnma1 PE=1 SV=3

 Score =  186 bits (471), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 82/108 (75%), Positives = 94/108 (87%)

Query: 16  HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
           H  +  K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+
Sbjct: 475 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 534

Query: 76  LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
           LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 535 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 582

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Rattus norvegicus (taxid: 10116)

>sp|Q08460|KCMA1_MOUSE Calcium-activated potassium channel subunit alpha-1 OS=Mus musculus GN=Kcnma1 PE=1 SV=2

 Score =  186 bits (471), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 82/108 (75%), Positives = 94/108 (87%)

Query: 16  HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
           H  +  K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+
Sbjct: 474 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 533

Query: 76  LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
           LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 534 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 581

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Mus musculus (taxid: 10090)

>sp|Q8AYS8|KCMA1_CHICK Calcium-activated potassium channel subunit alpha-1 OS=Gallus gallus GN=KCNMA1 PE=1 SV=2

 Score =  185 bits (469), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 83/108 (76%), Positives = 95/108 (87%)

Query: 16  HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
           H  +  K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+
Sbjct: 433 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 492

Query: 76  LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
           LLNIPSW+WK+GDD ICLAELKLGFIAQSCLAPG STM+ANLF+MRSF
Sbjct: 493 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAPGLSTMLANLFSMRSF 540

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Gallus gallus (taxid: 9031)

>sp|Q28204|KCMA1_BOVIN Calcium-activated potassium channel subunit alpha-1 OS=Bos taurus GN=KCNMA1 PE=1 SV=2

 Score =  181 bits (460), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 94/108 (87%)

Query: 16  HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
           H  +  K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+
Sbjct: 462 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 521

Query: 76  LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
           LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 522 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 569

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Bos taurus (taxid: 9913)

>sp|O18866|KCMA1_PIG Calcium-activated potassium channel subunit alpha-1 (Fragment) OS=Sus scrofa GN=KCNMA1 PE=2 SV=2

 Score =  181 bits (460), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 94/108 (87%)

Query: 16  HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
           H  +  K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+
Sbjct: 448 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 507

Query: 76  LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
           LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 508 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 555

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Sus scrofa (taxid: 9823)

>sp|O18867|KCMA1_MACMU Calcium-activated potassium channel subunit alpha-1 (Fragment) OS=Macaca mulatta GN=KCNMA1 PE=2 SV=1

 Score =  181 bits (460), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 94/108 (87%)

Query: 16  HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
           H  +  K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+
Sbjct: 447 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 506

Query: 76  LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
           LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 507 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 554

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Macaca mulatta (taxid: 9544)

>sp|Q12791|KCMA1_HUMAN Calcium-activated potassium channel subunit alpha-1 OS=Homo sapiens GN=KCNMA1 PE=1 SV=2

 Score =  181 bits (460), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 94/108 (87%)

Query: 16  HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
           H  +  K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+
Sbjct: 474 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 533

Query: 76  LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
           LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 534 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 581

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Homo sapiens (taxid: 9606)

>sp|Q9BG98|KCMA1_RABIT Calcium-activated potassium channel subunit alpha-1 OS=Oryctolagus cuniculus GN=KCNMA1 PE=2 SV=1

 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 94/108 (87%)

Query: 16  HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
           H  +  K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+
Sbjct: 475 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 534

Query: 76  LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
           LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 535 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 582

Potassium channel activated by both membrane depolarization or increase in cytosolic Ca(2+) that mediates export of K(+). It is also activated by the concentration of cytosolic Mg(2+). Its activation dampens the excitatory events that elevate the cytosolic Ca(2+) concentration and/or depolarize the cell membrane. It therefore contributes to repolarization of the membrane potential. Plays a key role in controlling excitability in a number of systems, such as regulation of the contraction of smooth muscle, the tuning of hair cells in the cochlea, regulation of transmitter release, and innate immunity. In smooth muscles, its activation by high level of Ca(2+), caused by ryanodine receptors in the sarcoplasmic reticulum, regulates the membrane potential. In cochlea cells, its number and kinetic properties partly determine the characteristic frequency of each hair cell and thereby helps to establish a tonotopic map. Kinetics of KCNMA1 channels are determined by alternative splicing, phosphorylation status and its combination with modulating beta subunits. Highly sensitive to both iberiotoxin (IbTx) and charybdotoxin (CTX).

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
28557653	1035	LD16342p [Drosophila melanogaster]	0.832	0.100	1.0	6e-58
195445934	1312	GK10969 [Drosophila willistoni] gi|19416	0.832	0.079	1.0	8e-58
158469	1184	calcium-activated K+ channel subunit, pa	0.832	0.087	1.0	8e-58
62472881	1213	slowpoke, isoform I [Drosophila melanoga	0.832	0.085	1.0	8e-58
270001010	1188	hypothetical protein TcasGA2_TC011288 [T	0.832	0.087	1.0	8e-58
195388704	1270	GJ23648 [Drosophila virilis] gi|19415110	0.832	0.081	1.0	8e-58
24649751	1183	slowpoke, isoform B [Drosophila melanoga	0.832	0.087	1.0	9e-58
390176946	1287	GA10500, isoform C [Drosophila pseudoobs	0.832	0.080	1.0	9e-58
281362477	1210	slowpoke, isoform R [Drosophila melanoga	0.832	0.085	1.0	9e-58
62472836	1200	slowpoke, isoform N [Drosophila melanoga	0.832	0.086	1.0	9e-58

>gi|28557653|gb|AAO45232.1| LD16342p [Drosophila melanogaster]

 Score =  227 bits (579), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 22  KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
           KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct: 237 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 296

Query: 82  WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 297 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 340

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195445934|ref|XP_002070550.1| GK10969 [Drosophila willistoni] gi|194166635|gb|EDW81536.1| GK10969 [Drosophila willistoni]

 Score =  227 bits (578), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 22  KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
           KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct: 480 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 539

Query: 82  WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 540 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 583

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158469|gb|AAA28902.1| calcium-activated K+ channel subunit, partial [Drosophila melanogaster]

 Score =  227 bits (578), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 22  KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
           KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct: 413 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 472

Query: 82  WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 473 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 516

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62472881|ref|NP_001014659.1| slowpoke, isoform I [Drosophila melanogaster] gi|61679386|gb|AAX52983.1| slowpoke, isoform I [Drosophila melanogaster]

 Score =  227 bits (578), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 22  KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
           KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct: 429 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 488

Query: 82  WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 489 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 532

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001010|gb|EEZ97457.1| hypothetical protein TcasGA2_TC011288 [Tribolium castaneum]

 Score =  227 bits (578), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 22  KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
           KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct: 483 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 542

Query: 82  WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 543 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 586

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388704|ref|XP_002053019.1| GJ23648 [Drosophila virilis] gi|194151105|gb|EDW66539.1| GJ23648 [Drosophila virilis]

 Score =  227 bits (578), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 22  KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
           KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct: 428 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 487

Query: 82  WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 488 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 531

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24649751|ref|NP_733029.1| slowpoke, isoform B [Drosophila melanogaster] gi|23172197|gb|AAN14013.1| slowpoke, isoform B [Drosophila melanogaster]

 Score =  227 bits (578), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 22  KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
           KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct: 412 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 471

Query: 82  WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 472 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 515

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390176946|ref|XP_001357719.3| GA10500, isoform C [Drosophila pseudoobscura pseudoobscura] gi|388858850|gb|EAL26853.3| GA10500, isoform C [Drosophila pseudoobscura pseudoobscura]

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 22  KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
           KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct: 455 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 514

Query: 82  WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 515 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 558

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281362477|ref|NP_001014661.2| slowpoke, isoform R [Drosophila melanogaster] gi|272477143|gb|AAX52980.2| slowpoke, isoform R [Drosophila melanogaster]

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 22  KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
           KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct: 412 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 471

Query: 82  WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 472 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 515

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62472836|ref|NP_001014654.1| slowpoke, isoform N [Drosophila melanogaster] gi|115311626|sp|Q03720.3|SLO_DROME RecName: Full=Calcium-activated potassium channel slowpoke; Short=dSlo; AltName: Full=BK channel; AltName: Full=Maxi K channel; Short=MaxiK gi|61679381|gb|AAX52978.1| slowpoke, isoform N [Drosophila melanogaster]

 Score =  226 bits (577), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 22  KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
           KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct: 429 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 488

Query: 82  WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct: 489 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 532

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
FB|FBgn0003429	1200	slo "slowpoke" [Drosophila mel	0.832	0.086	1.0	8.6e-52
UNIPROTKB|H7BRM5	1118	slo-1 "Protein SLO-1, isoform	0.856	0.095	0.897	3.8e-47
UNIPROTKB|H7BRM7	1131	slo-1 "SLO-1" [Caenorhabditis	0.856	0.094	0.897	3.9e-47
UNIPROTKB|H8ESD8	1138	slo-1 "Protein SLO-1, isoform	0.856	0.094	0.897	3.9e-47
UNIPROTKB|H8ESE4	1138	slo-1 "Protein SLO-1, isoform	0.856	0.094	0.897	3.9e-47
UNIPROTKB|H8ESE5	1140	slo-1 "Protein SLO-1, isoform	0.856	0.093	0.897	3.9e-47
UNIPROTKB|Q95V25	1140	slo-1 "Calcium-activated potas	0.856	0.093	0.897	3.9e-47
UNIPROTKB|H8ESD6	1146	slo-1 "Protein SLO-1, isoform	0.856	0.093	0.897	4e-47
UNIPROTKB|H7BRM4	1153	slo-1 "Protein SLO-1, isoform	0.856	0.092	0.897	4.1e-47
UNIPROTKB|H8ESE3	1153	slo-1 "Protein SLO-1, isoform	0.856	0.092	0.897	4.1e-47

FB|FBgn0003429 slo "slowpoke" [Drosophila melanogaster (taxid:7227)]

 Score = 548 (198.0 bits), Expect = 8.6e-52, P = 8.6e-52
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query:    22 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 81
             KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS
Sbjct:   429 KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPS 488

Query:    82 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
             WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct:   489 WDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 532

GO:0016020 "membrane" evidence=IDA

GO:0015269 "calcium-activated potassium channel activity" evidence=NAS;IDA

GO:0006813 "potassium ion transport" evidence=NAS;IDA

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=NAS;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=NAS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0042493 "response to drug" evidence=IMP

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0048512 "circadian behavior" evidence=IMP

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H7BRM5 slo-1 "Protein SLO-1, isoform h" [Caenorhabditis elegans (taxid:6239)]

 Score = 504 (182.5 bits), Expect = 3.8e-47, P = 3.8e-47
 Identities = 96/107 (89%), Positives = 101/107 (94%)

Query:    19 SNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLN 78
             S  K+ +ADACLVLANKY  +PDAEDAANIMRVISIKNYS DIRVI+QLMQYHNKAYLLN
Sbjct:   441 SRVKIGDADACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLLN 500

Query:    79 IPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
             IPSWDWK+GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct:   501 IPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 547

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H7BRM7 slo-1 "SLO-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 504 (182.5 bits), Expect = 3.9e-47, P = 3.9e-47
 Identities = 96/107 (89%), Positives = 101/107 (94%)

Query:    19 SNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLN 78
             S  K+ +ADACLVLANKY  +PDAEDAANIMRVISIKNYS DIRVI+QLMQYHNKAYLLN
Sbjct:   441 SRVKIGDADACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLLN 500

Query:    79 IPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
             IPSWDWK+GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct:   501 IPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 547

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H8ESD8 slo-1 "Protein SLO-1, isoform k" [Caenorhabditis elegans (taxid:6239)]

 Score = 504 (182.5 bits), Expect = 3.9e-47, P = 3.9e-47
 Identities = 96/107 (89%), Positives = 101/107 (94%)

Query:    19 SNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLN 78
             S  K+ +ADACLVLANKY  +PDAEDAANIMRVISIKNYS DIRVI+QLMQYHNKAYLLN
Sbjct:   441 SRVKIGDADACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLLN 500

Query:    79 IPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
             IPSWDWK+GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct:   501 IPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 547

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H8ESE4 slo-1 "Protein SLO-1, isoform g" [Caenorhabditis elegans (taxid:6239)]

 Score = 504 (182.5 bits), Expect = 3.9e-47, P = 3.9e-47
 Identities = 96/107 (89%), Positives = 101/107 (94%)

Query:    19 SNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLN 78
             S  K+ +ADACLVLANKY  +PDAEDAANIMRVISIKNYS DIRVI+QLMQYHNKAYLLN
Sbjct:   441 SRVKIGDADACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLLN 500

Query:    79 IPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
             IPSWDWK+GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct:   501 IPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 547

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H8ESE5 slo-1 "Protein SLO-1, isoform f" [Caenorhabditis elegans (taxid:6239)]

 Score = 504 (182.5 bits), Expect = 3.9e-47, P = 3.9e-47
 Identities = 96/107 (89%), Positives = 101/107 (94%)

Query:    19 SNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLN 78
             S  K+ +ADACLVLANKY  +PDAEDAANIMRVISIKNYS DIRVI+QLMQYHNKAYLLN
Sbjct:   441 SRVKIGDADACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLLN 500

Query:    79 IPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
             IPSWDWK+GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct:   501 IPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 547

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|Q95V25 slo-1 "Calcium-activated potassium channel slo-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 504 (182.5 bits), Expect = 3.9e-47, P = 3.9e-47
 Identities = 96/107 (89%), Positives = 101/107 (94%)

Query:    19 SNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLN 78
             S  K+ +ADACLVLANKY  +PDAEDAANIMRVISIKNYS DIRVI+QLMQYHNKAYLLN
Sbjct:   441 SRVKIGDADACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLLN 500

Query:    79 IPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
             IPSWDWK+GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct:   501 IPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 547

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H8ESD6 slo-1 "Protein SLO-1, isoform m" [Caenorhabditis elegans (taxid:6239)]

 Score = 504 (182.5 bits), Expect = 4.0e-47, P = 4.0e-47
 Identities = 96/107 (89%), Positives = 101/107 (94%)

Query:    19 SNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLN 78
             S  K+ +ADACLVLANKY  +PDAEDAANIMRVISIKNYS DIRVI+QLMQYHNKAYLLN
Sbjct:   456 SRVKIGDADACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLLN 515

Query:    79 IPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
             IPSWDWK+GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct:   516 IPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 562

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H7BRM4 slo-1 "Protein SLO-1, isoform e" [Caenorhabditis elegans (taxid:6239)]

 Score = 504 (182.5 bits), Expect = 4.1e-47, P = 4.1e-47
 Identities = 96/107 (89%), Positives = 101/107 (94%)

Query:    19 SNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLN 78
             S  K+ +ADACLVLANKY  +PDAEDAANIMRVISIKNYS DIRVI+QLMQYHNKAYLLN
Sbjct:   441 SRVKIGDADACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLLN 500

Query:    79 IPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
             IPSWDWK+GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct:   501 IPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 547

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

UNIPROTKB|H8ESE3 slo-1 "Protein SLO-1, isoform j" [Caenorhabditis elegans (taxid:6239)]

 Score = 504 (182.5 bits), Expect = 4.1e-47, P = 4.1e-47
 Identities = 96/107 (89%), Positives = 101/107 (94%)

Query:    19 SNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLN 78
             S  K+ +ADACLVLANKY  +PDAEDAANIMRVISIKNYS DIRVI+QLMQYHNKAYLLN
Sbjct:   441 SRVKIGDADACLVLANKYSTNPDAEDAANIMRVISIKNYSSDIRVIVQLMQYHNKAYLLN 500

Query:    79 IPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
             IPSWDWK+GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT
Sbjct:   501 IPSWDWKRGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 547

GO:0071805 "potassium ion transmembrane transport" evidence=IBA

GO:0060072 "large conductance calcium-activated potassium channel activity" evidence=IBA

GO:0008076 "voltage-gated potassium channel complex" evidence=IBA

GO:0005249 "voltage-gated potassium channel activity" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q95V25	SLO1_CAEEL	No assigned EC number	0.8971	0.856	0.0938	yes	N/A
Q62976	KCMA1_RAT	No assigned EC number	0.7592	0.864	0.0893	yes	N/A
O18867	KCMA1_MACMU	No assigned EC number	0.7592	0.864	0.0938	yes	N/A
Q28265	KCMA1_CANFA	No assigned EC number	0.7314	0.864	0.0931	yes	N/A
Q8AYS8	KCMA1_CHICK	No assigned EC number	0.7685	0.864	0.0949	yes	N/A
O18866	KCMA1_PIG	No assigned EC number	0.7592	0.864	0.0937	yes	N/A
Q28204	KCMA1_BOVIN	No assigned EC number	0.7592	0.864	0.0926	yes	N/A
Q03720	SLO_DROME	No assigned EC number	1.0	0.832	0.0866	yes	N/A
Q08460	KCMA1_MOUSE	No assigned EC number	0.7592	0.864	0.0893	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	125
pfam03493	101	pfam03493, BK_channel_a, Calcium-activated BK pota	5e-19

>gnl|CDD|202668 pfam03493, BK_channel_a, Calcium-activated BK potassium channel alpha subunit

 Score = 75.4 bits (186), Expect = 5e-19
 Identities = 23/48 (47%), Positives = 29/48 (60%)

Query: 78  NIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
              SW W   D VIC+ ELKL  +A+SCL PG ST++ NLF   S + 
Sbjct: 1   YENSWHWSFADQVICVEELKLALLAKSCLCPGISTLITNLFTSSSPQV 48

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
KOG1420|consensus	1103		100.0
KOG3193|consensus	1087		99.9
PF03493	101	BK_channel_a: Calcium-activated BK potassium chann	99.63
PRK10537	393	voltage-gated potassium channel; Provisional	98.65
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	98.09
PF06241	206	DUF1012: Protein of unknown function (DUF1012); In	97.42
PRK10669	558	putative cation:proton antiport protein; Provision	97.27
PRK09496	453	trkA potassium transporter peripheral membrane com	97.19
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.52
PRK09496	453	trkA potassium transporter peripheral membrane com	96.33
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.0
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.68
COG1226	212	Kch Kef-type K+ transport systems, predicted NAD-b	91.08

>KOG1420|consensus

Probab=100.00  E-value=1e-34  Score=249.92  Aligned_cols=112  Identities=88%  Similarity=1.356  Sum_probs=110.1

Q ss_pred             CcccccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEh
Q psy6103          14 GNHQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICL   93 (125)
Q Consensus        14 ~~~DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~   93 (125)
                      ++.||.|+++++|+||+||||+|+.||++||+.||||+++||+|.|++|||+|+++.+||+|+.|+|+|+|+.+|.|||.
T Consensus       422 np~dl~rvki~~adaclvlankyc~dpdaedaanimrvisiknys~dirvi~qlmqyhnkayllnipswdwk~gddvicl  501 (1103)
T KOG1420|consen  422 NPHDLARVKIESADACLVLANKYCADPDAEDAANIMRVISIKNYSPDIRVITQLMQYHNKAYLLNIPSWDWKEGDDVICL  501 (1103)
T ss_pred             ChhhhhheeccccceeeeecccccCCCChhhhhhheEEEEeccCCCchhHHHHHHHhhchheeecCCCcccccCCceEEe
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCChHHHHHHHHhhcccCC
Q psy6103          94 AELKLGFIAQSCLAPGFSTMMANLFAMRSFKT  125 (125)
Q Consensus        94 ~elk~~lLA~sc~~PG~sTli~NL~~~~s~~~  125 (125)
                      .|+|++++||||+.||+||++.|||.++|+|+
T Consensus       502 aelklgfiaqsclapgfstmmanlfamrsfkt  533 (1103)
T KOG1420|consen  502 AELKLGFIAQSCLAPGFSTMMANLFAMRSFKT  533 (1103)
T ss_pred             hhhhhhhhHHHhhcccHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999985

>KOG3193|consensus

Probab=99.90  E-value=6.6e-25  Score=188.96  Aligned_cols=99  Identities=23%  Similarity=0.520  Sum_probs=94.7

Q ss_pred             cccccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhH
Q psy6103          15 NHQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLA   94 (125)
Q Consensus        15 ~~DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~   94 (125)
                      +.||.||++.+|+|||||+-++-.+..+.|.++|||.||||+|.|+++.||||.+||.|.|+        +.|..+||.+
T Consensus       355 d~dl~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdfapnv~qyvqifr~e~k~hi--------~~ae~~iced  426 (1087)
T KOG3193|consen  355 DEDLERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFAPNVKQYVQIFRAETKMHI--------EHAEVLICED  426 (1087)
T ss_pred             cchhhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhcCCchHHHhhhhchhhhhhh--------hhheeEEehh
Confidence            56999999999999999999999999999999999999999999999999999999999887        5689999999


Q ss_pred             HHHHHHHHhhcccCChHHHHHHHHhhc
Q psy6103          95 ELKLGFIAQSCLAPGFSTMMANLFAMR  121 (125)
Q Consensus        95 elk~~lLA~sc~~PG~sTli~NL~~~~  121 (125)
                      |||++|||++|.|||+|||++-|+++.
T Consensus       427 efkyallannc~cpg~st~itll~hts  453 (1087)
T KOG3193|consen  427 EFKYALLANNCICPGISTFITLLMHTS  453 (1087)
T ss_pred             hHHHHHHhcCCcCCCHHHHHHHHhhhc
Confidence            999999999999999999999999864

>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=99.63  E-value=2.3e-16  Score=109.56  Aligned_cols=44  Identities=59%  Similarity=1.123  Sum_probs=35.7

Q ss_pred             CCCCCCCCCeEeEhHHHHHHHHHhhcccCChHHHHHHHHhhccc
Q psy6103          80 PSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF  123 (125)
Q Consensus        80 ~~w~~~~ad~vIc~~elk~~lLA~sc~~PG~sTli~NL~~~~s~  123 (125)
                      ++|.++++|+|||.+|+|++|||+||+|||++|||+||+++.+.
T Consensus         3 ~~~~~~~~d~vIc~~elK~~lLA~sc~~PG~sTLi~NL~~s~~~   46 (101)
T PF03493_consen    3 SKWHWKFADQVICIEELKLGLLAQSCLCPGFSTLITNLFHSSSG   46 (101)
T ss_dssp             TT--TTTT-EEEEHHHHHHHHHHHHHHSTTHHHHHHHTTS----
T ss_pred             cccccccCceEEEHHHHHHHHHHHHcCCCcHHHHHHHHHHhcCc
Confidence            56788999999999999999999999999999999999999764

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Ca2+-activated K+ channels are a diverse group of channels that are activated by an increase in intracellular Ca2+ concentration. They are found in the majority of nerve cells, where they modulate cell excitability and action potential. Three types of Ca2+-activated K+ channel have been characterised, termed small-conductance (SK), intermediate conductance (IK) and large conductance (BK) respectively []. BK channels (also referred to as maxi-K channels) are widely expressed in the body, being found in glandular tissue, smooth and skeletal muscle, as well as in neural tissues. They have been demonstrated to regulate arteriolar and airway diameter, and also neurotransmitter release. Each channel complex is thought to be composed of 2 types of subunit; the pore-forming (alpha) subunits and smaller accessory (beta) subunits. The alpha subunit of the BK channel was initially thought to share the characteristic 6TM organisation of the voltage-gated K+ channels. However, the molecule is now thought to possess an additional TM domain, with an extracellular N terminus and intracellular C terminus. This C-terminal region contains 4 predominantly hydrophobic domains, which are also thought to lie intracellularly. The extracellular N terminus and the first TM region are required for modulation by the beta subunit. The precise location of the Ca2+-binding site that modulates channel activation remains unknown, but it is thought to lie within the C-terminal hydrophobic domains.; GO: 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016020 membrane; PDB: 3NAF_A 3MT5_A 3U6N_E.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=98.65  E-value=1.5e-07  Score=78.98  Aligned_cols=98  Identities=18%  Similarity=0.255  Sum_probs=84.1

Q ss_pred             cccccCcc----cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCC
Q psy6103           9 DDMQCGNH----QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDW   84 (125)
Q Consensus         9 ~~~~~~~~----DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~   84 (125)
                      -+...|+.    +|+||++++|++++++.+        +|..|++.++++|.++|+++++++...+++..++..+     
T Consensus       282 ~~vI~GD~td~e~L~~AgI~~A~aVI~~t~--------dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L~~~-----  348 (393)
T PRK10537        282 ADLIPGDSSDSAVLKKAGAARARAILALRD--------NDADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKIKRV-----  348 (393)
T ss_pred             CcEEEeCCCCHHHHHhcCcccCCEEEEcCC--------ChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHhc-----
Confidence            34556654    599999999999999886        3899999999999999999999999999999888665     


Q ss_pred             CCCCeEeEhHHHHHHHHHhhcccCCh-HHHHHHHHhh
Q psy6103          85 KQGDDVICLAELKLGFIAQSCLAPGF-STMMANLFAM  120 (125)
Q Consensus        85 ~~ad~vIc~~elk~~lLA~sc~~PG~-sTli~NL~~~  120 (125)
                       |+|.||+..++-...|++...-|-+ ...|..++-+
T Consensus       349 -GaD~VIsp~~l~g~~la~~l~g~~I~~~~i~~~~~~  384 (393)
T PRK10537        349 -HPDMIFSPQLLGSELLARTLNGEEIDNDMITSMLFN  384 (393)
T ss_pred             -CCCEEECHHHHHHHHHHHHhcCCCCCHHHHHHHHcc
Confidence             4999999999999999999988887 6677766643

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=98.09  E-value=6.6e-06  Score=56.33  Aligned_cols=62  Identities=24%  Similarity=0.408  Sum_probs=56.0

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeE
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVIC   92 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc   92 (125)
                      .|.++++.+|++++++.+        .|..|++.++.+|.++|+.++++++..+++...+..++      +|.||.
T Consensus        54 ~l~~a~i~~a~~vv~~~~--------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g------~d~vi~  115 (116)
T PF02254_consen   54 VLERAGIEKADAVVILTD--------DDEENLLIALLARELNPDIRIIARVNDPENAELLRQAG------ADHVIS  115 (116)
T ss_dssp             HHHHTTGGCESEEEEESS--------SHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-------SEEEE
T ss_pred             HHhhcCccccCEEEEccC--------CHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCC------cCEEEC
Confidence            499999999999999998        49999999999999999999999999999998887754      898885

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants

Probab=97.42  E-value=0.0014  Score=50.59  Aligned_cols=88  Identities=19%  Similarity=0.352  Sum_probs=74.8

Q ss_pred             ccEEEEccCCCCCCchhHHHHHHHHHHhhhhcC--CCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHHHHHHHHh
Q psy6103          26 ADACLVLANKYCQDPDAEDAANIMRVISIKNYS--DDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGFIAQ  103 (125)
Q Consensus        26 A~AvfILad~~~~d~~~~D~~tILr~laVK~~~--p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~elk~~lLA~  103 (125)
                      |.|++||+.+  .|+.+.|++.++.+||....-  -..+++||+-...+...+...+      +..|=-++.+-+.||-|
T Consensus         1 ARaIIiL~~k--~d~ye~Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~------G~~VetV~dv~skL~VQ   72 (206)
T PF06241_consen    1 ARAIIILAEK--EDRYESDADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVS------GLKVETVHDVISKLMVQ   72 (206)
T ss_pred             CceEEEeCCC--CCcchhhHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhc------CceeeeHHHHHHHHHHH
Confidence            7899999984  488999999999999987755  4799999999998887776554      67776669999999999


Q ss_pred             hcccCChHHHHHHHHhhc
Q psy6103         104 SCLAPGFSTMMANLFAMR  121 (125)
Q Consensus       104 sc~~PG~sTli~NL~~~~  121 (125)
                      +...||+...+-.|+...
T Consensus        73 CsRQ~GL~~Iy~~iL~~~   90 (206)
T PF06241_consen   73 CSRQPGLAQIYEDILGFE   90 (206)
T ss_pred             hccCccHHHHHHHHhCCC
Confidence            999999999998887543

They have been implicated in modulating the nuclear membrane envelope potential [].

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.27  E-value=0.00068  Score=58.68  Aligned_cols=84  Identities=13%  Similarity=0.050  Sum_probs=69.2

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|++|.+++|++++++.+.        |..+..-+.++|..+|+.++++..-.+++...+..      .|+|.||..++.
T Consensus       473 ~L~~a~i~~a~~viv~~~~--------~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~------~Gad~vv~p~~~  538 (558)
T PRK10669        473 IMQLAHLDCARWLLLTIPN--------GYEAGEIVASAREKRPDIEIIARAHYDDEVAYITE------RGANQVVMGERE  538 (558)
T ss_pred             HHHhcCccccCEEEEEcCC--------hHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH------cCCCEEEChHHH
Confidence            4899999999999998763        34444455567888999999999988888877755      459999999999


Q ss_pred             HHHHHHhhcccCChHHHH
Q psy6103          97 KLGFIAQSCLAPGFSTMM  114 (125)
Q Consensus        97 k~~lLA~sc~~PG~sTli  114 (125)
                      -..-+++....||.+...
T Consensus       539 ~a~~i~~~l~~~~~~~~~  556 (558)
T PRK10669        539 IARTMLELLETPPAGEVV  556 (558)
T ss_pred             HHHHHHHHhcCCCccccc
Confidence            999999999999987654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.19  E-value=0.0016  Score=54.03  Aligned_cols=83  Identities=19%  Similarity=0.165  Sum_probs=70.7

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.++.+.+|++++++++.        |..|++.++..|.+++. +++++...+++...+..+      |+|.||..+++
T Consensus       289 ~L~~~~~~~a~~vi~~~~~--------~~~n~~~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~------g~~~vi~p~~~  353 (453)
T PRK09496        289 LLEEEGIDEADAFIALTND--------DEANILSSLLAKRLGAK-KVIALVNRPAYVDLVEGL------GIDIAISPRQA  353 (453)
T ss_pred             HHHhcCCccCCEEEECCCC--------cHHHHHHHHHHHHhCCC-eEEEEECCcchHHHHHhc------CCCEEECHHHH
Confidence            4889999999999998873        57888888989998775 899999999988776554      48999999999


Q ss_pred             HHHHHHhhcccCChHHHH
Q psy6103          97 KLGFIAQSCLAPGFSTMM  114 (125)
Q Consensus        97 k~~lLA~sc~~PG~sTli  114 (125)
                      -...+++....|++..+.
T Consensus       354 ~~~~~~~~~~~~~~~~~~  371 (453)
T PRK09496        354 TASEILRHVRRGDIVAVH  371 (453)
T ss_pred             HHHHHHHHhhccchhhhh
Confidence            999999999999986644

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.52  E-value=0.0079  Score=52.91  Aligned_cols=72  Identities=8%  Similarity=-0.042  Sum_probs=58.5

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|++|.+++|++++++.+.        |..|+..+..+|.++|+.+|++-.-.+++...+..+      |+|.|+...--
T Consensus       456 ~L~~agi~~A~~vv~~~~d--------~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~------Ga~~vv~e~~e  521 (601)
T PRK03659        456 LLRAAGAEKAEAIVITCNE--------PEDTMKIVELCQQHFPHLHILARARGRVEAHELLQA------GVTQFSRETFS  521 (601)
T ss_pred             HHHhcCCccCCEEEEEeCC--------HHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhC------CCCEEEccHHH
Confidence            3999999999999999873        778888888999999999999999999998888765      48988765433


Q ss_pred             HHHHHH
Q psy6103          97 KLGFIA  102 (125)
Q Consensus        97 k~~lLA  102 (125)
                      -.-.|+
T Consensus       522 s~l~l~  527 (601)
T PRK03659        522 SALELG  527 (601)
T ss_pred             HHHHHH
Confidence            333333

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.33  E-value=0.018  Score=47.84  Aligned_cols=86  Identities=16%  Similarity=0.067  Sum_probs=68.5

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccch--HhhhhcCCCCCCCCCCeEeEhH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHN--KAYLLNIPSWDWKQGDDVICLA   94 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~--k~~l~~a~~w~~~~ad~vIc~~   94 (125)
                      .|.++.++.|++++++.+.        |..|+..+..+|.++|..++++..-.+++  ...+....   ..|++.||+.+
T Consensus        57 ~l~~~~~~~a~~vi~~~~~--------~~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~~~l~~~~---~~G~~~vi~p~  125 (453)
T PRK09496         57 VLREAGAEDADLLIAVTDS--------DETNMVACQIAKSLFGAPTTIARVRNPEYAEYDKLFSKE---ALGIDLLISPE  125 (453)
T ss_pred             HHHHcCCCcCCEEEEecCC--------hHHHHHHHHHHHHhcCCCeEEEEECCccccchhhhhhhh---cCCccEEECHH
Confidence            5888999999999998863        67788888999999999999999877665  12221001   14699999999


Q ss_pred             HHHHHHHHhhcccCChHHH
Q psy6103          95 ELKLGFIAQSCLAPGFSTM  113 (125)
Q Consensus        95 elk~~lLA~sc~~PG~sTl  113 (125)
                      ++-...|+.....|+...+
T Consensus       126 ~~~a~~l~~~l~~~~~~~~  144 (453)
T PRK09496        126 LLVAREIARLIEYPGALDV  144 (453)
T ss_pred             HHHHHHHHHHhcCCCceEe
Confidence            9999999999999997554

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.00  E-value=0.024  Score=50.22  Aligned_cols=75  Identities=8%  Similarity=-0.054  Sum_probs=60.4

Q ss_pred             ccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHHH
Q psy6103          18 NSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELK   97 (125)
Q Consensus        18 L~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~elk   97 (125)
                      |.+|.+++|++++++.+.        |..|+..+..+|+.+|++++++-.-.+++...+.++      |+|.|+-...-.
T Consensus       457 L~~agi~~A~~vvv~~~d--------~~~n~~i~~~ar~~~p~~~iiaRa~d~~~~~~L~~~------Gad~v~~e~~e~  522 (621)
T PRK03562        457 LESAGAAKAEVLINAIDD--------PQTSLQLVELVKEHFPHLQIIARARDVDHYIRLRQA------GVEKPERETFEG  522 (621)
T ss_pred             HHhcCCCcCCEEEEEeCC--------HHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHC------CCCEEehhhHhH
Confidence            788999999999999873        788999999999999999999998888887777654      489887665555


Q ss_pred             HHHHHhhcc
Q psy6103          98 LGFIAQSCL  106 (125)
Q Consensus        98 ~~lLA~sc~  106 (125)
                      .-.+++..+
T Consensus       523 sl~l~~~~L  531 (621)
T PRK03562        523 ALKSGRLVL  531 (621)
T ss_pred             HHHHHHHHH
Confidence            555555544

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.68  E-value=0.04  Score=42.83  Aligned_cols=85  Identities=16%  Similarity=0.307  Sum_probs=68.2

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      -|.+|.+.+|++++...+.       .....++..++.|.+. --++++-+-.++....+...      +++.+|+.+..
T Consensus        58 ~L~~agi~~aD~vva~t~~-------d~~N~i~~~la~~~~g-v~~viar~~~~~~~~~~~~~------g~~~ii~Pe~~  123 (225)
T COG0569          58 VLEEAGIDDADAVVAATGN-------DEVNSVLALLALKEFG-VPRVIARARNPEHEKVLEKL------GADVIISPEKL  123 (225)
T ss_pred             HHHhcCCCcCCEEEEeeCC-------CHHHHHHHHHHHHhcC-CCcEEEEecCHHHHHHHHHc------CCcEEECHHHH
Confidence            3999999999999999875       2455666667777664 46788988888777666544      48999999999


Q ss_pred             HHHHHHhhcccCChHHHHH
Q psy6103          97 KLGFIAQSCLAPGFSTMMA  115 (125)
Q Consensus        97 k~~lLA~sc~~PG~sTli~  115 (125)
                      -...+++....||+..++.
T Consensus       124 ~~~~l~~~i~~p~~~~~~~  142 (225)
T COG0569         124 AAKRLARLIVTPGALDVLE  142 (225)
T ss_pred             HHHHHHHHhcCCChheEEe
Confidence            9999999999999876543

>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=91.08  E-value=1.4  Score=31.16  Aligned_cols=80  Identities=15%  Similarity=0.140  Sum_probs=61.6

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecc-cchHhhhhcCCCCCCCCCCeEeEhHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQ-YHNKAYLLNIPSWDWKQGDDVICLAE   95 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~-~e~k~~l~~a~~w~~~~ad~vIc~~e   95 (125)
                      .|.+|.+..|.++++..+.        +..++.-+..++.++|++++++=.-. ..+..++..      .|++.+++...
T Consensus        77 ~l~~a~~~~a~~vi~~~~~--------~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~l~~------~G~~~vi~~~~  142 (212)
T COG1226          77 VLEAAGIERARAVIVTLSD--------DATNVFIVLLARAINPELEILARARDLDEAVETLTT------VGADEVVPPTF  142 (212)
T ss_pred             HHHhcChhheeEEEEecCC--------HHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHHH------cCCCeeecHHH
Confidence            4778999999999999873        66666666779999999997666666 444455544      45999999988


Q ss_pred             HHHHHHHhhcccCCh
Q psy6103          96 LKLGFIAQSCLAPGF  110 (125)
Q Consensus        96 lk~~lLA~sc~~PG~  110 (125)
                      .....++...+.+..
T Consensus       143 ~~~~~~~~~~~~~~~  157 (212)
T COG1226         143 ESALLLARAALVGLG  157 (212)
T ss_pred             HHHHHHHHHHhcccC
Confidence            888888777776655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
3naf_A	798	Structure Of The Intracellular Gating Ring From The		6e-47
3mt5_A	726	Crystal Structure Of The Human Bk Gating Apparatus		7e-47
3u6n_A	696	Open Structure Of The Bk Channel Gating Ring Length		1e-45
4hpf_A	722	Structure Of The Human Slo3 Gating Ring Length = 72		2e-33

>pdb|3NAF|A Chain A, Structure Of The Intracellular Gating Ring From The Human High- Conductance Ca2+ Gated K+ Channel (Bk Channel) Length = 798

Iteration: 1
 Score =  182 bits (461), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 16  HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
           H  +  K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+
Sbjct: 120 HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 179
Query: 76  LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
           LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 180 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 227

>pdb|3MT5|A Chain A, Crystal Structure Of The Human Bk Gating Apparatus Length = 726

Iteration: 1
 Score =  181 bits (460), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 94/108 (87%)
Query: 16  HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
           H  +  K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+
Sbjct: 70  HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 129
Query: 76  LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
           LLNIPSW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF
Sbjct: 130 LLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF 177

>pdb|3U6N|A Chain A, Open Structure Of The Bk Channel Gating Ring Length = 696

Iteration: 1
 Score =  177 bits (450), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 93/108 (86%)
Query: 16  HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAY 75
           H  +  K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+
Sbjct: 70  HDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAH 129
Query: 76  LLNIPSWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF 123
           LLNIPSW+WK+GDD ICLAELK GFIAQSCLA G STM+ANLF+MRS+
Sbjct: 130 LLNIPSWNWKEGDDAICLAELKAGFIAQSCLAQGLSTMLANLFSMRSY 177

>pdb|4HPF|A Chain A, Structure Of The Human Slo3 Gating Ring Length = 722

Iteration: 1
 Score =  136 bits (343), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/102 (57%), Positives = 74/102 (72%)
Query: 23  VHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSW 82
           V  A+ACL++AN  C D  AED +NIMRV+SIKNY    R+IIQ++Q HNK YL  IPSW
Sbjct: 77  VESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDSTTRIIIQILQSHNKVYLPKIPSW 136
Query: 83  DWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFK 124
           +W  GD++IC AELKLGFIAQ CL PG  T + +LF  ++ K
Sbjct: 137 NWDTGDNIICFAELKLGFIAQGCLVPGLCTFLTSLFVEQNKK 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
3naf_A	798	Calcium-activated potassium channel subunit alpha;	4e-31
3mt5_A	726	Potassium large conductance calcium-activated CHA	2e-28

>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} Length = 798

 Score =  114 bits (286), Expect = 4e-31
 Identities = 81/105 (77%), Positives = 92/105 (87%)

Query: 21  SKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIP 80
            K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+LLNIP
Sbjct: 125 VKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIP 184

Query: 81  SWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           SW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF  
Sbjct: 185 SWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIK 229

>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A Length = 726

 Score =  107 bits (267), Expect = 2e-28
 Identities = 81/105 (77%), Positives = 92/105 (87%)

Query: 21  SKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIP 80
            K+  ADACL+LANKYC DPDAEDA+NIMRVISIKNY   IR+I Q++QYHNKA+LLNIP
Sbjct: 75  VKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIP 134

Query: 81  SWDWKQGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSFKT 125
           SW+WK+GDD ICLAELKLGFIAQSCLA G STM+ANLF+MRSF  
Sbjct: 135 SWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIK 179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
4hpf_A	722	Potassium channel subfamily U member 1; PH-gated,	99.95
3mt5_A	726	Potassium large conductance calcium-activated CHA	99.91
3naf_A	798	Calcium-activated potassium channel subunit alpha;	99.9
1lnq_A	336	MTHK channels, potassium channel related protein;	98.78
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	98.31
4hpf_A	722	Potassium channel subfamily U member 1; PH-gated,	98.17
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	98.15
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.08
3naf_A	798	Calcium-activated potassium channel subunit alpha;	97.92
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.87
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	97.76
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.54
3mt5_A	726	Potassium large conductance calcium-activated CHA	97.54
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.38
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.01
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.41
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.25
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.76
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.34
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.01
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.67

>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}

Probab=99.95  E-value=1.8e-28  Score=213.82  Aligned_cols=112  Identities=53%  Similarity=0.996  Sum_probs=106.6

Q ss_pred             cccCc----ccccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCC
Q psy6103          11 MQCGN----HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQ   86 (125)
Q Consensus        11 ~~~~~----~DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~   86 (125)
                      ++.|+    +||.||++++|+|||||++++..++.++|++||+++|++|+++|+++|+||+++++|+.|+.+++.|.+++
T Consensus        61 ~i~Gs~~~~~dL~ra~i~~A~av~Il~~~~~~d~~~~D~~~il~~laik~~~p~~~iivq~~~~~n~~~~~~~~~~~~~g  140 (722)
T 4hpf_A           61 FISGSAMKWEDLRRVAVESAEACLIIANPLCSDSHAEDISNIMRVLSIKNYDSTTRIIIQILQSHNKVYLPKIPSWNWDT  140 (722)
T ss_dssp             CCBCCSSCHHHHHHHTGGGSSEEEECCCSSCSCHHHHHHHHHHHHHHHHHHCTTCCEEEECSSGGGGGHHHHSTTCCTTT
T ss_pred             EEEcCCCCHHHHHhcCcccCCEEEEeCCCccCCchhhHHHHHHHHHHHHHhCCCCCEEEEECChhhHHHHHhhhhhhhcC
Confidence            45554    48999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeEhHHHHHHHHHhhcccCChHHHHHHHHhhcc
Q psy6103          87 GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRS  122 (125)
Q Consensus        87 ad~vIc~~elk~~lLA~sc~~PG~sTli~NL~~~~s  122 (125)
                      +|+|||.+|+|+++||++|+|||++|++.||+++.+
T Consensus       141 ad~VI~~~el~~~lla~s~~~PG~stli~~Ll~~~~  176 (722)
T 4hpf_A          141 GDNIICFAELKLGFIAQGCLVPGLCTFLTSLFVEQN  176 (722)
T ss_dssp             TCEEECHHHHHHHHHHHHHHSTTHHHHHHHTTCCCC
T ss_pred             CCeEEeHHHHHHHHHHHHhcCCCHHHHHHHHHhccc
Confidence            999999999999999999999999999999998764

>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A

Probab=99.91  E-value=7.8e-25  Score=192.36  Aligned_cols=114  Identities=72%  Similarity=1.192  Sum_probs=107.0

Q ss_pred             ccccCcc----cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCC
Q psy6103          10 DMQCGNH----QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWK   85 (125)
Q Consensus        10 ~~~~~~~----DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~   85 (125)
                      .++.|+.    ||.||++++|++|||+++++..++..+|++||+++|++|+++|+++|++|+++++++.++.++|+|+++
T Consensus        60 ~fI~Gdat~~edL~RA~I~~A~aVIIlad~~~~d~~~sDa~nIl~vLsar~lnP~i~IVA~~~~~en~~~L~ri~sw~~A  139 (726)
T 3mt5_A           60 EFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWK  139 (726)
T ss_dssp             EEECCCTTSHHHHHHTTGGGCSEEEEECCTTCSCHHHHHHHHHHHHHHHHHHCTTSCEEEEESCHHHHGGGGGSTTCCTT
T ss_pred             EEEEeCCCCHHHHHhcChhhcCEEEEEcCccccCCcccHHHHHHHHHHHHHhCCCCCEEEEECCHHHHHHHhhccchhhc
Confidence            3455554    799999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             CCCeEeEhHHHHHHHHHhhcccCChHHHHHHHHhhccc
Q psy6103          86 QGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRSF  123 (125)
Q Consensus        86 ~ad~vIc~~elk~~lLA~sc~~PG~sTli~NL~~~~s~  123 (125)
                      |||+|||.++++..+||++|++||+++++.||+++++.
T Consensus       140 GAd~VI~~~el~g~LLAqs~l~PGlst~i~~LLs~~s~  177 (726)
T 3mt5_A          140 EGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF  177 (726)
T ss_dssp             TTCEEEEHHHHHHHHHHHHHHSTTHHHHHHTTTSCCCC
T ss_pred             CCCEEEehHHHHHHHHHHHhcCCCHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999987543

>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}

Probab=99.90  E-value=3.7e-24  Score=189.68  Aligned_cols=113  Identities=73%  Similarity=1.205  Sum_probs=107.0

Q ss_pred             ccccCc----ccccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCC
Q psy6103          10 DMQCGN----HQNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWK   85 (125)
Q Consensus        10 ~~~~~~----~DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~   85 (125)
                      .++.|+    +||.||++++|++|||+++++..++..+|++||+++|++|+++|+++|++|+.+++++.++.++++|+++
T Consensus       110 ~fI~Gdat~~e~L~RAgI~~A~aVIIla~~~~~d~~~~Da~nIl~vLsar~lnP~i~IIa~~~~~en~~~L~~~~sw~~A  189 (798)
T 3naf_A          110 EFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWK  189 (798)
T ss_dssp             EEEECCSSSHHHHHHTTGGGCSEEEECCCTTCSCHHHHHHHHHHHHHHHHHHSTTCCEEEEESCTTGGGSGGGCTTCCTT
T ss_pred             EEEEcCCCCHHHHHhcCHhhCCEEEEECCccccCCccchHHHHHHHHHHHHHCCCCCEEEEECCHhHHHHHHhcccchhc
Confidence            355666    4799999999999999999998899999999999999999999999999999999999999999999999


Q ss_pred             CCCeEeEhHHHHHHHHHhhcccCChHHHHHHHHhhcc
Q psy6103          86 QGDDVICLAELKLGFIAQSCLAPGFSTMMANLFAMRS  122 (125)
Q Consensus        86 ~ad~vIc~~elk~~lLA~sc~~PG~sTli~NL~~~~s  122 (125)
                      |||+|||.++++..+||++|++||+++++.||+++++
T Consensus       190 GAd~VI~~~el~g~LLAqs~l~PGls~~i~~LLs~~~  226 (798)
T 3naf_A          190 EGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRS  226 (798)
T ss_dssp             TTCEEEEHHHHHHHHHHHHHHSTTHHHHHHHHHSCCC
T ss_pred             CCCEEEehHHHHHHHHHHHhcCCCHHHHHHHHhcccc
Confidence            9999999999999999999999999999999998754

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=98.78  E-value=2e-08  Score=79.37  Aligned_cols=89  Identities=19%  Similarity=0.246  Sum_probs=80.7

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      +|.+|.+++|++++++.+        +|..|++.++.+|.++|+.+++++...+++...+..+      |+|.||+.++.
T Consensus       169 ~L~~a~i~~a~~vi~~~~--------~d~~n~~~~~~ar~~~~~~~iiar~~~~~~~~~l~~~------G~d~vi~~~~~  234 (336)
T 1lnq_A          169 DLEKANVRGARAVIVDLE--------SDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMA------GADQVISPFVI  234 (336)
T ss_dssp             HHHHTCSTTEEEEEECCS--------SHHHHHHHHHHHHTTCTTSEEEEECSSGGGHHHHHHT------TCSEEECHHHH
T ss_pred             HHHhcChhhccEEEEcCC--------ccHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHc------CCCEEEChhHh
Confidence            589999999999999875        3899999999999999999999999999998887654      48999999999


Q ss_pred             HHHHHHhhcccCChHHHHHHHHh
Q psy6103          97 KLGFIAQSCLAPGFSTMMANLFA  119 (125)
Q Consensus        97 k~~lLA~sc~~PG~sTli~NL~~  119 (125)
                      ....|++.+..||+..++.+++.
T Consensus       235 ~~~~l~~~~~~~~~~~~~~~~~~  257 (336)
T 1lnq_A          235 SGRLMSRSIDDGYEAMFVQDVLA  257 (336)
T ss_dssp             HHHHHHHTSSCSHHHHHHHHHTS
T ss_pred             HHHHHHHHHhCccHHHHHHHHHc
Confidence            99999999999999888867764

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=98.31  E-value=2.1e-06  Score=64.23  Aligned_cols=89  Identities=19%  Similarity=0.246  Sum_probs=78.3

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.++.+..|++|+++.+        .|..|++.++.+|.++|++++++.+-.+++...+..+      |+|.||+.++.
T Consensus        63 ~l~~a~i~~ad~vi~~~~--------~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~  128 (234)
T 2aef_A           63 DLEKANVRGARAVIVDLE--------SDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMA------GADQVISPFVI  128 (234)
T ss_dssp             HHHHTTCTTCSEEEECCS--------CHHHHHHHHHHHHHHCSSSEEEEECSSGGGHHHHHHH------TCSEEECHHHH
T ss_pred             HHHhcCcchhcEEEEcCC--------CcHHHHHHHHHHHHHCCCCeEEEEECCHhHHHHHHHC------CCCEEECHHHH
Confidence            578899999999999875        3789999999999999999999999999988777654      48999999999


Q ss_pred             HHHHHHhhcccCChHHHHHHHHh
Q psy6103          97 KLGFIAQSCLAPGFSTMMANLFA  119 (125)
Q Consensus        97 k~~lLA~sc~~PG~sTli~NL~~  119 (125)
                      -...|++.+..|++..++..++.
T Consensus       129 ~a~~l~~~~~~~~~~~~~~~~~~  151 (234)
T 2aef_A          129 SGRLMSRSIDDGYEAMFVQDVLA  151 (234)
T ss_dssp             HHHHHHHTSSCSHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCccHHHHHHHHhc
Confidence            99999999999998888755543

>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}

Probab=98.17  E-value=2.3e-06  Score=74.52  Aligned_cols=110  Identities=12%  Similarity=0.149  Sum_probs=81.3

Q ss_pred             ccccCcc----cccccccCcccEEEEccCCCCC--CchhHHHHHHHHHHhhhhcC-------CCCcEEEEecccchHhhh
Q psy6103          10 DMQCGNH----QNSNSKVHEADACLVLANKYCQ--DPDAEDAANIMRVISIKNYS-------DDIRVIIQLMQYHNKAYL   76 (125)
Q Consensus        10 ~~~~~~~----DL~Ra~~~~A~AvfILad~~~~--d~~~~D~~tILr~laVK~~~-------p~~~i~vqil~~e~k~~l   76 (125)
                      |+..|..    ||.||++..|+.|+||+.....  ++.-.|..+|+.++.|+++.       |++++++|+..+.|...+
T Consensus       446 y~~~GSpl~~~DL~ragi~~a~~vVIl~~~~~~~~~~~~~D~~tI~~~~~I~~l~~~~~~~~~~i~iitEL~~~sN~~fl  525 (722)
T 4hpf_A          446 YILPGCALYSGDLHAANIEQCSMCAVLSPPPQPSSNQTLVDTEAIMATLTIGSLQIDEKSNCRKVPILTELKNPSNIHFI  525 (722)
T ss_dssp             EEEESCTTCHHHHHHTTGGGCSEEEEECCCCCC-----CCSHHHHHHHHHHHSCCC-------CCCEEEECSSGGGHHHH
T ss_pred             EEEECCcCCHHHHHhcCcccccEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHhhhhccCCCCcEEEEecCcccchhh
Confidence            4556664    8999999999999999976442  34446999999999999984       789999999999998887


Q ss_pred             hcC---CCCCCCC---------CCeEeEhHHHHHHHHHhhcccCChHHHHHHHHhh
Q psy6103          77 LNI---PSWDWKQ---------GDDVICLAELKLGFIAQSCLAPGFSTMMANLFAM  120 (125)
Q Consensus        77 ~~a---~~w~~~~---------ad~vIc~~elk~~lLA~sc~~PG~sTli~NL~~~  120 (125)
                      ...   ..|....         +-.|. ...+=..||.|+.+-|.+.|++..|+..
T Consensus       526 ~~~~~~~~~~~~~~~~~s~~FAsG~vf-s~smldsLl~qsf~n~~i~~ii~~Ll~g  580 (722)
T 4hpf_A          526 EQLGGLEGSLQETNLHLSTAFSTGTVF-SGSFLDSLLATAFYNYHVLELLQMLVTG  580 (722)
T ss_dssp             HHHHTCCTTTCCSSGGGSHHHHHTSEE-CGGGGGTHHHHHHHCHHHHHHHHHHHHS
T ss_pred             cccccchhcccCcccccchhhhcccEe-HHHHHHHHHHHHHhcHHHHHHHHHHhcC
Confidence            422   2222111         12344 4455566999999999999999999864

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=98.15  E-value=3.3e-06  Score=70.94  Aligned_cols=79  Identities=11%  Similarity=0.116  Sum_probs=68.0

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      +|.+|.+++|++++++.+         |..|++.++.+|.++ ++++++..-.+++..++..+      |+|+||+.++.
T Consensus       184 ~L~~a~i~~a~~vi~t~~---------D~~n~~~~~~ar~~~-~~~iiar~~~~~~~~~l~~~------Gad~vi~p~~~  247 (565)
T 4gx0_A          184 VLAGLRVAAARSIIANLS---------DPDNANLCLTVRSLC-QTPIIAVVKEPVHGELLRLA------GANQVVPLTRI  247 (565)
T ss_dssp             HHHHTTGGGCSEEEECSC---------HHHHHHHHHHHHTTC-CCCEEEECSSGGGHHHHHHH------TCSEEECHHHH
T ss_pred             HHHhcCcccCCEEEEeCC---------cHHHHHHHHHHHHhc-CceEEEEECCHHHHHHHHHc------CCCEEEChHHH
Confidence            599999999999998432         678899999999999 99999999999999888765      49999999999


Q ss_pred             HHHHHHhhcccCChH
Q psy6103          97 KLGFIAQSCLAPGFS  111 (125)
Q Consensus        97 k~~lLA~sc~~PG~s  111 (125)
                      ....|++.+..||..
T Consensus       248 ~~~~la~~~~~p~~~  262 (565)
T 4gx0_A          248 LGRYLGIRATTCGAL  262 (565)
T ss_dssp             HHHHHHHHHHC----
T ss_pred             HHHHHHHHhcccccc
Confidence            999999999999985

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.08  E-value=1.7e-05  Score=55.58  Aligned_cols=88  Identities=17%  Similarity=0.272  Sum_probs=75.7

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.++.+..|++|+++.+.        |..|++.+...|..+|..++++..-.+++...+..+      |+|.||+.+++
T Consensus        63 ~l~~a~i~~ad~vi~~~~~--------d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~  128 (153)
T 1id1_A           63 VLKKAGIDRCRAILALSDN--------DADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMV------HPDIILSPQLF  128 (153)
T ss_dssp             HHHHHTTTTCSEEEECSSC--------HHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTT------CCSEEECHHHH
T ss_pred             HHHHcChhhCCEEEEecCC--------hHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHc------CCCEEEcHHHH
Confidence            4788899999999999863        788999999999999999999999999988777654      48999999999


Q ss_pred             HHHHHHhhcccCCh-HHHHHHHH
Q psy6103          97 KLGFIAQSCLAPGF-STMMANLF  118 (125)
Q Consensus        97 k~~lLA~sc~~PG~-sTli~NL~  118 (125)
                      -...|++....|++ ...+.+++
T Consensus       129 ~~~~l~~~~~~~~~~~~~~~~~~  151 (153)
T 1id1_A          129 GSEILARVLNGEEINNDMLVSML  151 (153)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCcHHHHHHHh
Confidence            99999999999988 55555544

>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}

Probab=97.92  E-value=2.2e-05  Score=69.96  Aligned_cols=111  Identities=15%  Similarity=0.208  Sum_probs=82.9

Q ss_pred             ccccCcc----cccccccCcccEEEEccCCC--CCCchhHHHHHHHHHHhhhh---------------------------
Q psy6103          10 DMQCGNH----QNSNSKVHEADACLVLANKY--CQDPDAEDAANIMRVISIKN---------------------------   56 (125)
Q Consensus        10 ~~~~~~~----DL~Ra~~~~A~AvfILad~~--~~d~~~~D~~tILr~laVK~---------------------------   56 (125)
                      ++..|.+    ||+||++..|++|+||+++.  +.|+...|+.+||.++=||.                           
T Consensus       462 y~v~Gspl~~~dL~~anI~~a~~~VIls~~~~~~~~~~l~D~~~il~~lni~~m~~~~s~~~~~~~~~~~~~~~~~~~~~  541 (798)
T 3naf_A          462 SILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSP  541 (798)
T ss_dssp             EBCBSCTTCHHHHHHTTSTTCSEEEEEESSCTTCCCSSSTTHHHHHHHHHHHHCCCC-----------------------
T ss_pred             EEecCCCCCHHHHHHhCHHhCCEEEEEcCCCCCCCChhhhhHHHHHhhhhhhhhcccccccccccccccccccccccccc
Confidence            4566665    89999999999999999963  44777799999977666554                           


Q ss_pred             ---------------cCCCCcEEEEecccchHhhhhcCCCCCCCC---------CCeEeEhHHHHHHHHHhhcccCChHH
Q psy6103          57 ---------------YSDDIRVIIQLMQYHNKAYLLNIPSWDWKQ---------GDDVICLAELKLGFIAQSCLAPGFST  112 (125)
Q Consensus        57 ---------------~~p~~~i~vqil~~e~k~~l~~a~~w~~~~---------ad~vIc~~elk~~lLA~sc~~PG~sT  112 (125)
                                     ++|++++++|+-.+.|...+..-. .+..+         |..-+-...+-..|+.+..+.|-+.|
T Consensus       542 ~~~~~~~~~~~~~~~~~~~ipiitEL~~~~ni~fl~~~~-~~~~~~~~~~~~~fa~G~~fs~s~ldsl~~~~y~n~~~~~  620 (798)
T 3naf_A          542 DNSPVHGMLRQPSITTGVNIPIITELVNDTNVQFLDQDD-DDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILT  620 (798)
T ss_dssp             ---------------CTTCCCEEEEESSTTGGGGGSCCT-TCCTTCCGGGSHHHHHTSEEETTHHHHHHHHHHHCTHHHH
T ss_pred             ccccccchhhccccccCCCCceEEEecCCCccccccccC-CCccCcceeecccccccceeHHHHHHHHHHHHHhCHHHHH
Confidence                           357899999999999987775311 11111         12233445566779999999999999


Q ss_pred             HHHHHHhhc
Q psy6103         113 MMANLFAMR  121 (125)
Q Consensus       113 li~NL~~~~  121 (125)
                      ++.-|++..
T Consensus       621 il~~lvtGg  629 (798)
T 3naf_A          621 LIRTLVTGG  629 (798)
T ss_dssp             HHHHHHSCS
T ss_pred             HHHHHHhCC
Confidence            999998753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.87  E-value=4.7e-05  Score=52.86  Aligned_cols=78  Identities=13%  Similarity=0.031  Sum_probs=66.6

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.++.+..|+++++..+.        |..+.+-+..+|..+|++++++-.-.+++...+..+      |+|.||+.++.
T Consensus        63 ~l~~a~i~~ad~vi~~~~~--------~~~n~~~~~~a~~~~~~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~  128 (140)
T 3fwz_A           63 IMQLAHLECAKWLILTIPN--------GYEAGEIVASARAKNPDIEIIARAHYDDEVAYITER------GANQVVMGERE  128 (140)
T ss_dssp             HHHHTTGGGCSEEEECCSC--------HHHHHHHHHHHHHHCSSSEEEEEESSHHHHHHHHHT------TCSEEEEHHHH
T ss_pred             HHHhcCcccCCEEEEECCC--------hHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHC------CCCEEECchHH
Confidence            3888999999999988763        667777788899999999999999999998888765      49999999999


Q ss_pred             HHHHHHhhcccC
Q psy6103          97 KLGFIAQSCLAP  108 (125)
Q Consensus        97 k~~lLA~sc~~P  108 (125)
                      -..-|++....|
T Consensus       129 ~a~~i~~~l~~~  140 (140)
T 3fwz_A          129 IARTMLELLETP  140 (140)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHhhCC
Confidence            998888877665

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=97.76  E-value=5.7e-05  Score=63.39  Aligned_cols=83  Identities=16%  Similarity=0.193  Sum_probs=71.7

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.++.+++|++++++.+.        |..|++.++.+|.++|++++++..-.+++...+..+      |+|.||+.++.
T Consensus       400 ~L~~agi~~ad~vi~~~~~--------d~~ni~~~~~ak~l~~~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~  465 (565)
T 4gx0_A          400 TLRQAGIDRASGIIVTTND--------DSTNIFLTLACRHLHSHIRIVARANGEENVDQLYAA------GADFVVSNASV  465 (565)
T ss_dssp             HHHHHTTTSCSEEEECCSC--------HHHHHHHHHHHHHHCSSSEEEEEESSTTSHHHHHHH------TCSEEEEHHHH
T ss_pred             HHHhcCccccCEEEEECCC--------chHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHc------CCCEEEccchH
Confidence            4999999999999999973        899999999999999999999999999998887665      49999999999


Q ss_pred             HHHHHHhhcccCChHHH
Q psy6103          97 KLGFIAQSCLAPGFSTM  113 (125)
Q Consensus        97 k~~lLA~sc~~PG~sTl  113 (125)
                      -...+++....|.+..+
T Consensus       466 ~~~~i~~~~~~~~~~~~  482 (565)
T 4gx0_A          466 GANILGNLLEHKESAFL  482 (565)
T ss_dssp             HHHHHHHHHHCC-----
T ss_pred             HHHHHHHHhcchhhhhh
Confidence            99999998887766543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.54  E-value=0.00012  Score=53.95  Aligned_cols=82  Identities=16%  Similarity=0.166  Sum_probs=72.2

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.++.+..|+++++..+.        |..|++.+...|..+|..++++..-.+++...+..+      |+|.||+.++.
T Consensus        57 ~l~~a~i~~ad~vi~~~~~--------d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~------G~d~vi~p~~~  122 (218)
T 3l4b_C           57 ILRDAEVSKNDVVVILTPR--------DEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKM------GITTVLNLTTL  122 (218)
T ss_dssp             HHHHHTCCTTCEEEECCSC--------HHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHH------TCEECCCHHHH
T ss_pred             HHHhcCcccCCEEEEecCC--------cHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHC------CCCEEECHHHH
Confidence            4888999999999998763        778899999999999999999999999998887665      48999999999


Q ss_pred             HHHHHHhhcccCChHH
Q psy6103          97 KLGFIAQSCLAPGFST  112 (125)
Q Consensus        97 k~~lLA~sc~~PG~sT  112 (125)
                      -...|++....|++..
T Consensus       123 ~~~~l~~~~~~~~~~~  138 (218)
T 3l4b_C          123 ITNTVEALIFPDEFSS  138 (218)
T ss_dssp             HHHHHHHHHCTTSCEE
T ss_pred             HHHHHHHHhccCCceE
Confidence            9999999999998754

>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A

Probab=97.54  E-value=5.5e-05  Score=66.84  Aligned_cols=111  Identities=15%  Similarity=0.202  Sum_probs=77.6

Q ss_pred             ccccCcc----cccccccCcccEEEEccCCC--CCCchhHHHHHHHHHHhhhhc--------------------------
Q psy6103          10 DMQCGNH----QNSNSKVHEADACLVLANKY--CQDPDAEDAANIMRVISIKNY--------------------------   57 (125)
Q Consensus        10 ~~~~~~~----DL~Ra~~~~A~AvfILad~~--~~d~~~~D~~tILr~laVK~~--------------------------   57 (125)
                      |+..|.+    ||.||++..|++|+||+.+.  ..|+.-.|..+||.+|-||..                          
T Consensus       438 y~~~Gspl~~~dL~~~~i~~c~~cvils~~~~~~~~~~l~D~e~ila~lni~~m~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (726)
T 3mt5_A          438 SILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSP  517 (726)
T ss_dssp             EEEESCTTCHHHHHHTTGGGCSEEEEEECC----------CHHHHHHHHHHHTCEEC-----------------------
T ss_pred             EEecCCcCChHhHHHhCHhhCCEEEEecCCCCCcCCcccchhhhhhhhhccccccccccccccccccccccccccccccc
Confidence            4456665    89999999999999999854  457777899999999777764                          


Q ss_pred             ----------------CCCCcEEEEecccchHhhhhcCCCCCC---------CCCCeEeEhHHHHHHHHHhhcccCChHH
Q psy6103          58 ----------------SDDIRVIIQLMQYHNKAYLLNIPSWDW---------KQGDDVICLAELKLGFIAQSCLAPGFST  112 (125)
Q Consensus        58 ----------------~p~~~i~vqil~~e~k~~l~~a~~w~~---------~~ad~vIc~~elk~~lLA~sc~~PG~sT  112 (125)
                                      ++++++++|+..+.|...+..-. .+.         ..|...+-...+--.||.+..+.|-+.|
T Consensus       518 ~~~~~~~~~~~~~~~~~~~i~iitEL~~~sni~fl~~~~-~~~~~~~~~~~~~fa~G~~f~~s~ldsl~~~~~~n~~i~~  596 (726)
T 3mt5_A          518 DNSPVHGMLRQPSITTGVNIPIITELVNDTNVQFLDQDD-DDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILT  596 (726)
T ss_dssp             ------------CCEEGGGSCEEEEESCGGGGTTSCSSS-CCCTTSCGGGSHHHHTTCEEEGGGGGTHHHHHHHCHHHHH
T ss_pred             ccCccchhhhcccccccCCCceEEEecCCccceeeeecc-ccCCCcceeecccccccceehHHHHHHHHHHHHhhHHHHH
Confidence                            35789999999999987765311 011         1122334444555669999999999999


Q ss_pred             HHHHHHhhc
Q psy6103         113 MMANLFAMR  121 (125)
Q Consensus       113 li~NL~~~~  121 (125)
                      ++..|++..
T Consensus       597 ~~~~litgg  605 (726)
T 3mt5_A          597 LIRTLVTGG  605 (726)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHhCC
Confidence            999998764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.38  E-value=0.00076  Score=46.10  Aligned_cols=79  Identities=13%  Similarity=0.128  Sum_probs=67.4

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.++.+..|+++|+..+        .|..+++.+..+|..+ ..++++..-.+++...+..+      |+|.||+.++.
T Consensus        62 ~l~~~~~~~~d~vi~~~~--------~~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~  126 (141)
T 3llv_A           62 FYRSLDLEGVSAVLITGS--------DDEFNLKILKALRSVS-DVYAIVRVSSPKKKEEFEEA------GANLVVLVADA  126 (141)
T ss_dssp             HHHHSCCTTCSEEEECCS--------CHHHHHHHHHHHHHHC-CCCEEEEESCGGGHHHHHHT------TCSEEEEHHHH
T ss_pred             HHHhCCcccCCEEEEecC--------CHHHHHHHHHHHHHhC-CceEEEEEcChhHHHHHHHc------CCCEEECHHHH
Confidence            377888899999998776        3778899999999999 89999999999888777665      48999999999


Q ss_pred             HHHHHHhhcccCCh
Q psy6103          97 KLGFIAQSCLAPGF  110 (125)
Q Consensus        97 k~~lLA~sc~~PG~  110 (125)
                      -...|++....|+.
T Consensus       127 ~~~~l~~~i~~p~~  140 (141)
T 3llv_A          127 VKQAFMDKIKKMET  140 (141)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhCccc
Confidence            99999999999975

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.01  E-value=0.0011  Score=54.37  Aligned_cols=80  Identities=9%  Similarity=-0.021  Sum_probs=66.9

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.+|.+.+|+++++..+.        |..|+..+..+|.++|+++|++-.-.+++...+..+|      +|.||..+..
T Consensus        60 ~L~~agi~~A~~viv~~~~--------~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L~~~G------ad~Vi~~~~~  125 (413)
T 3l9w_A           60 LLESAGAAKAEVLINAIDD--------PQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAG------VEKPERETFE  125 (413)
T ss_dssp             HHHHTTTTTCSEEEECCSS--------HHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHTT------CSSCEETTHH
T ss_pred             HHHhcCCCccCEEEECCCC--------hHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCC------CCEEECccHH
Confidence            3889999999999998873        8899999999999999999999999999888887654      9999988777


Q ss_pred             HHHHHHhhcc-cCCh
Q psy6103          97 KLGFIAQSCL-APGF  110 (125)
Q Consensus        97 k~~lLA~sc~-~PG~  110 (125)
                      -...|+...+ .-|+
T Consensus       126 ~a~~la~~~L~~lg~  140 (413)
T 3l9w_A          126 GALKTGRLALESLGL  140 (413)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCC
Confidence            7766666555 3344

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.41  E-value=0.017  Score=38.39  Aligned_cols=78  Identities=18%  Similarity=0.327  Sum_probs=57.2

Q ss_pred             ccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHHH
Q psy6103          18 NSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELK   97 (125)
Q Consensus        18 L~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~elk   97 (125)
                      |.++.+..|+.||+....        |..+..-....+.+.|. ++++..-.+++...+..+      +++.|++.+++-
T Consensus        62 l~~~~~~~~d~vi~~~~~--------~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~~l~~~------g~~~v~~p~~~~  126 (140)
T 1lss_A           62 LEDAGIEDADMYIAVTGK--------EEVNLMSSLLAKSYGIN-KTIARISEIEYKDVFERL------GVDVVVSPELIA  126 (140)
T ss_dssp             HHHTTTTTCSEEEECCSC--------HHHHHHHHHHHHHTTCC-CEEEECSSTTHHHHHHHT------TCSEEECHHHHH
T ss_pred             HHHcCcccCCEEEEeeCC--------chHHHHHHHHHHHcCCC-EEEEEecCHhHHHHHHHc------CCCEEECHHHHH
Confidence            556778899999999752        23344444556777775 888888888877766554      489999999999


Q ss_pred             HHHHHhhcccCCh
Q psy6103          98 LGFIAQSCLAPGF  110 (125)
Q Consensus        98 ~~lLA~sc~~PG~  110 (125)
                      ...+++....|++
T Consensus       127 ~~~~~~~~~~p~~  139 (140)
T 1lss_A          127 ANYIEKLIERPGI  139 (140)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHhccCCC
Confidence            9999999998874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.25  E-value=0.0069  Score=50.27  Aligned_cols=87  Identities=16%  Similarity=0.088  Sum_probs=69.8

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.+|.+++|++++.+.+.        |..|++..+..|..+|..++++-+-.|++..+......-..-+.|.+|+.+++
T Consensus        60 ~L~~Agi~~ad~~ia~t~~--------De~Nl~~~~~Ak~~~~~~~~iar~~~~~~~~~~~~l~~~~~~giD~iIsPe~~  131 (461)
T 4g65_A           60 VLHEAGAQDADMLVAVTNT--------DETNMAACQVAFTLFNTPNRIARIRSPQYLAQKEALFKSGAIPVDHLIAPEEL  131 (461)
T ss_dssp             HHHHHTTTTCSEEEECCSC--------HHHHHHHHHHHHHHHCCSSEEEECCCHHHHTTHHHHTTTSSSCCSEEECHHHH
T ss_pred             HHHhcCCCcCCEEEEEcCC--------hHHHHHHHHHHHHhcCCccceeEeccchhhhhhhhhhhcccCCcceeecHHHH
Confidence            3999999999998887763        99999999999999999999999988875432211110011468999999999


Q ss_pred             HHHHHHhhcccCChH
Q psy6103          97 KLGFIAQSCLAPGFS  111 (125)
Q Consensus        97 k~~lLA~sc~~PG~s  111 (125)
                      -...+++-...||..
T Consensus       132 ~a~~I~~~i~~p~~~  146 (461)
T 4g65_A          132 VTSYIERLIQYPGAL  146 (461)
T ss_dssp             HHHHHHHHHTSTTCS
T ss_pred             HHHHHHHhccCCCeE
Confidence            999999999999863

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.76  E-value=0.024  Score=40.21  Aligned_cols=75  Identities=8%  Similarity=-0.080  Sum_probs=58.5

Q ss_pred             cccc-ccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          18 NSNS-KVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        18 L~Ra-~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      |.++ .+..|+.||+....        |..+..-+..+|..+|..++++....+++...+..+      |++.|++.++.
T Consensus        97 l~~~~~~~~ad~vi~~~~~--------~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~  162 (183)
T 3c85_A           97 WERILDTGHVKLVLLAMPH--------HQGNQTALEQLQRRNYKGQIAAIAEYPDQLEGLLES------GVDAAFNIYSE  162 (183)
T ss_dssp             HHTBCSCCCCCEEEECCSS--------HHHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHH------TCSEEEEHHHH
T ss_pred             HHhccCCCCCCEEEEeCCC--------hHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHc------CCCEEEchHHH
Confidence            6777 78999999997652        455666667889999999999988888777766554      58999999998


Q ss_pred             HHHHHHhhcc
Q psy6103          97 KLGFIAQSCL  106 (125)
Q Consensus        97 k~~lLA~sc~  106 (125)
                      -...|++..+
T Consensus       163 ~a~~l~~~~~  172 (183)
T 3c85_A          163 AGSGFARHVC  172 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776544

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.34  E-value=0.019  Score=38.23  Aligned_cols=80  Identities=15%  Similarity=0.105  Sum_probs=60.6

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      +|.++.+..++.+++.+..   +    ...++......|.+.|. ++++..-.+++...+..+      +++.+++.++.
T Consensus        62 ~l~~~~~~~~d~vi~~~~~---~----~~~~~~~~~~~~~~~~~-~ii~~~~~~~~~~~l~~~------g~~~vi~p~~~  127 (144)
T 2hmt_A           62 ELLSLGIRNFEYVIVAIGA---N----IQASTLTTLLLKELDIP-NIWVKAQNYYHHKVLEKI------GADRIIHPEKD  127 (144)
T ss_dssp             HHHTTTGGGCSEEEECCCS---C----HHHHHHHHHHHHHTTCS-EEEEECCSHHHHHHHHHH------TCSEEECHHHH
T ss_pred             HHHhcCCCCCCEEEECCCC---c----hHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHc------CCCEEECccHH
Confidence            4666778899999988763   1    13455666778888886 888888777776666544      48999999999


Q ss_pred             HHHHHHhhcccCCh
Q psy6103          97 KLGFIAQSCLAPGF  110 (125)
Q Consensus        97 k~~lLA~sc~~PG~  110 (125)
                      -...|++....|+.
T Consensus       128 ~~~~l~~~~~~~~~  141 (144)
T 2hmt_A          128 MGVKIAQSLSDENV  141 (144)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhccc
Confidence            99999988887764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.01  E-value=0.11  Score=35.94  Aligned_cols=74  Identities=15%  Similarity=0.165  Sum_probs=57.5

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.++.+..|+.||+....        |..+......+|..+|..++++..-.+++...+..+      +++ +|+.+++
T Consensus        76 ~l~~~~~~~ad~Vi~~~~~--------~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~l~~~------G~~-vi~p~~~  140 (155)
T 2g1u_A           76 TLKECGMEKADMVFAFTND--------DSTNFFISMNARYMFNVENVIARVYDPEKIKIFEEN------GIK-TICPAVL  140 (155)
T ss_dssp             HHHTTTGGGCSEEEECSSC--------HHHHHHHHHHHHHTSCCSEEEEECSSGGGHHHHHTT------TCE-EECHHHH
T ss_pred             HHHHcCcccCCEEEEEeCC--------cHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHC------CCc-EEcHHHH
Confidence            3666778899999998763        445566666778788999999999988888777654      478 9999999


Q ss_pred             HHHHHHhhc
Q psy6103          97 KLGFIAQSC  105 (125)
Q Consensus        97 k~~lLA~sc  105 (125)
                      -...|++..
T Consensus       141 ~a~~l~~~l  149 (155)
T 2g1u_A          141 MIEKVKEFI  149 (155)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988887653

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.67  E-value=0.095  Score=43.36  Aligned_cols=90  Identities=16%  Similarity=0.248  Sum_probs=73.8

Q ss_pred             cccccccCcc---c-ccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCC
Q psy6103           7 ESDDMQCGNH---Q-NSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSW   82 (125)
Q Consensus         7 ~~~~~~~~~~---D-L~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w   82 (125)
                      ++...++|+.   + |..+++.+|++++-+.+.        |..|||..+-.|++... ++++-+-.+++...+..    
T Consensus       278 ~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~--------De~Ni~~~llAk~~gv~-kvIa~vn~~~~~~l~~~----  344 (461)
T 4g65_A          278 ENTIVFCGDAADQELLTEENIDQVDVFIALTNE--------DETNIMSAMLAKRMGAK-KVMVLIQRGAYVDLVQG----  344 (461)
T ss_dssp             TTSEEEESCTTCHHHHHHTTGGGCSEEEECCSC--------HHHHHHHHHHHHHTTCS-EEEEECSCHHHHHHHCS----
T ss_pred             CCceEEeccccchhhHhhcCchhhcEEEEcccC--------cHHHHHHHHHHHHcCCc-cccccccccchhhhhhc----
Confidence            3456677776   2 899999999999999874        99999999999998864 88888888887766644    


Q ss_pred             CCCCCCeEeEhHHHHHHHHHhhcccCChH
Q psy6103          83 DWKQGDDVICLAELKLGFIAQSCLAPGFS  111 (125)
Q Consensus        83 ~~~~ad~vIc~~elk~~lLA~sc~~PG~s  111 (125)
                        .+.|.+|.........+.+....|++.
T Consensus       345 --~gid~visp~~~~a~~I~~~i~~~~v~  371 (461)
T 4g65_A          345 --GVIDVAISPQQATISALLTHVRRADIV  371 (461)
T ss_dssp             --SSSCEEECHHHHHHHHHHHHHHHTTCC
T ss_pred             --cccceeeCHHHHHHHHHHHHhhccccc
Confidence              458999999999988888888777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	98.96
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	98.79
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.6
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.32

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=7.8e-10  Score=77.06  Aligned_cols=94  Identities=17%  Similarity=0.275  Sum_probs=81.3

Q ss_pred             cccCcc----cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCC
Q psy6103          11 MQCGNH----QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQ   86 (125)
Q Consensus        11 ~~~~~~----DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~   86 (125)
                      .+.|+.    .|.+|.+++|++++++++.        |..|++.++.+|.++|++++++++..+++...+..+      |
T Consensus        53 vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~--------d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~------G  118 (153)
T d1id1a_          53 VIPGDSNDSSVLKKAGIDRCRAILALSDN--------DADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMV------H  118 (153)
T ss_dssp             EEESCTTSHHHHHHHTTTTCSEEEECSSC--------HHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTT------C
T ss_pred             EEEccCcchHHHHHhccccCCEEEEcccc--------HHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHHHC------C
Confidence            445544    4999999999999999863        899999999999999999999999999999888765      4


Q ss_pred             CCeEeEhHHHHHHHHHhhcccCChHH-HHHHHH
Q psy6103          87 GDDVICLAELKLGFIAQSCLAPGFST-MMANLF  118 (125)
Q Consensus        87 ad~vIc~~elk~~lLA~sc~~PG~sT-li~NL~  118 (125)
                      +|.||+.+++-...|++....|++++ ++..+|
T Consensus       119 ad~vi~p~~~~~~~l~~~l~~~~v~~~~~~~~l  151 (153)
T d1id1a_         119 PDIILSPQLFGSEILARVLNGEEINNDMLVSML  151 (153)
T ss_dssp             CSEEECHHHHHHHHHHHHHTTCCCCHHHHHHTT
T ss_pred             CCEEECHHHHHHHHHHHHhCcCCCCHHHHHHHh
Confidence            99999999999999999999999964 444443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=98.79  E-value=4.2e-09  Score=71.54  Aligned_cols=75  Identities=21%  Similarity=0.304  Sum_probs=68.7

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.+|++.+|++++++++        +|..|++.++++|.++|++++++.+..+++...+..+      |+|.||+.+++
T Consensus        54 ~L~~a~i~~A~~vi~~~~--------~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~------G~d~vi~p~~~  119 (129)
T d2fy8a1          54 DLEKANVRGARAVIVNLE--------SDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMA------GADQVISPFVI  119 (129)
T ss_dssp             HHHHTTCTTCSEEEECCS--------SHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHHHHH------HCSEEECHHHH
T ss_pred             HHHHhhhhcCcEEEEecc--------chhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHHHHC------CCCEEEChHHH
Confidence            499999999999999986        3999999999999999999999999999999888765      49999999999


Q ss_pred             HHHHHHhhc
Q psy6103          97 KLGFIAQSC  105 (125)
Q Consensus        97 k~~lLA~sc  105 (125)
                      -..+||++.
T Consensus       120 ~~~~la~~v  128 (129)
T d2fy8a1         120 SGRLMSRSI  128 (129)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            999999874

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.60  E-value=0.00015  Score=48.41  Aligned_cols=73  Identities=16%  Similarity=0.298  Sum_probs=62.6

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.++.+++|++++++.+.        |..|++.++..|.++|. ++++.+-.+++...+..+|      +|.||..+++
T Consensus        57 ~l~~~~i~~a~~vv~~t~~--------d~~N~~~~~~~k~~~~~-~iI~~~~~~~~~~~l~~~G------~d~vi~p~~~  121 (132)
T d1lssa_          57 TLEDAGIEDADMYIAVTGK--------EEVNLMSSLLAKSYGIN-KTIARISEIEYKDVFERLG------VDVVVSPELI  121 (132)
T ss_dssp             HHHHTTTTTCSEEEECCSC--------HHHHHHHHHHHHHTTCC-CEEEECSSTTHHHHHHHTT------CSEEECHHHH
T ss_pred             hhhhcChhhhhhhcccCCc--------HHHHHHHHHHHHHcCCc-eEEEEecCHHHHHHHHHCC------CCEEECHHHH
Confidence            4899999999999998763        78899999999999987 8999999999988887765      8999999988


Q ss_pred             HHHHHHhh
Q psy6103          97 KLGFIAQS  104 (125)
Q Consensus        97 k~~lLA~s  104 (125)
                      -...+++.
T Consensus       122 ~a~~i~~~  129 (132)
T d1lssa_         122 AANYIEKL  129 (132)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.32  E-value=0.00014  Score=48.13  Aligned_cols=78  Identities=14%  Similarity=0.026  Sum_probs=60.8

Q ss_pred             cccccccCcccEEEEccCCCCCCchhHHHHHHHHHHhhhhcCCCCcEEEEecccchHhhhhcCCCCCCCCCCeEeEhHHH
Q psy6103          17 QNSNSKVHEADACLVLANKYCQDPDAEDAANIMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAEL   96 (125)
Q Consensus        17 DL~Ra~~~~A~AvfILad~~~~d~~~~D~~tILr~laVK~~~p~~~i~vqil~~e~k~~l~~a~~w~~~~ad~vIc~~el   96 (125)
                      .|.++.+.+|+++|+..+.        |..+.+.+..+++.+|..++++-.-.+++...+..+      |+|.||..++.
T Consensus        56 ~l~~a~i~~a~~vi~~~~~--------~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~------Gad~vi~p~~~  121 (134)
T d2hmva1          56 ELLSLGIRNFEYVIVAIGA--------NIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKI------GADRIIHPEKD  121 (134)
T ss_dssp             HHHHHTGGGCSEEEECCCS--------CHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHH------TCSEEECHHHH
T ss_pred             hhhccCCccccEEEEEcCc--------hHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHC------CCCEEEChHHH
Confidence            3889999999999887753        344455555566667778999999999888887765      49999999999


Q ss_pred             HHHHHHhhcccC
Q psy6103          97 KLGFIAQSCLAP  108 (125)
Q Consensus        97 k~~lLA~sc~~P  108 (125)
                      -..-||+....|
T Consensus       122 ~a~~la~~l~~~  133 (134)
T d2hmva1         122 MGVKIAQSLSDE  133 (134)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC
Confidence            888888766544