Psyllid ID: psy6122

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MATHQVYVIPRSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFRGLEFLVYEYCLIVH
Secondary Structure (PSIPRED)
ccccccEEccccccEEEEcccccccccccEEEEEccEEEEEEccccccccEEEcccEEEEEEEEccccEEEEEEccccccccEEEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEcccccccccccEEEEEccEEEEEEccccccccEEEcccEEEEEEEEcccccEEEEcccccccccEccEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
mathqvyviprstplilttnngdedkapseatfrGLEFLVYDqtriggepiissqdtISLYFRTKhstglilhadkapseatfrgLEFLVYEYCLIVH
Flexible Loop (DISEMBL)
mathqvyviprstplilttnngdedkapseATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHadkapseatfrGLEFLVYEYCLIVH
Low Complexity Region (SEG)
MATHQVYVIPRSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFRGLEFLVYEYCLIVH
Disordered region (IsUnstruct)
*****VYVIPRSTPLIL**************TFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFRGLEFLVYEYCLIV*
Disordered Region (DISOPRED)
*********PRSTP******************FRGLEFLVYDQTRIGG****SSQDTISLYFRTKHSTGLILHADKAPSEATFRGLEFLVYEYCLIVH
Disordered Region (DISEMBL)
MATHQVYVIPRSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFRGLEFLVYEYCLIVH
Disordered Region (DISPRO)
*A**QVYVIPRSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFRGLEFLVYEYCLIVH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATHQVYVIPRSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFRGLEFLVYEYCLIVH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
D0PRN3	1693	Neurexin-3 OS=Gallus gall	yes	N/A	0.755	0.043	0.363	4e-06
Q6P9K9	1571	Neurexin-3 OS=Mus musculu	yes	N/A	0.448	0.028	0.510	4e-05
Q9Y4C0	1643	Neurexin-3 OS=Homo sapien	yes	N/A	0.448	0.026	0.510	4e-05
A1XQX8	1697	Neurexin-3a OS=Danio reri	no	N/A	0.448	0.025	0.510	5e-05
Q28146	1530	Neurexin-1 OS=Bos taurus	yes	N/A	0.540	0.034	0.428	8e-05
Q63372	1530	Neurexin-1 OS=Rattus norv	yes	N/A	0.540	0.034	0.428	8e-05
Q07310	1578	Neurexin-3 OS=Rattus norv	yes	N/A	0.663	0.041	0.367	0.0001
A1XQY1	1686	Neurexin-3b OS=Danio reri	no	N/A	0.448	0.026	0.489	0.0001
Q63374	1715	Neurexin-2 OS=Rattus norv	no	N/A	0.448	0.025	0.489	0.0002
Q9DDD0	1363	Neurexin-1 (Fragment) OS=	no	N/A	0.540	0.038	0.4	0.0003

>sp|D0PRN3|NRX3A_CHICK Neurexin-3 OS=Gallus gallus PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 1   MATHQVYVIPRSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISL 60
           + +  V  IP  + L+++     + +  + ATFRG E+L YD ++    PI SS D I+L
Sbjct: 233 LCSEDVNHIPGLSHLMMSEQGRSKARDENMATFRGSEYLCYDLSQ---NPIQSSSDEITL 289

Query: 61  YFRTKHSTGLILHADKA 77
            F+T    GLILH  K+
Sbjct: 290 SFKTWQRNGLILHTGKS 306

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion. May mediate intracellular signaling.
Gallus gallus (taxid: 9031)

>sp|Q6P9K9|NRX3A_MOUSE Neurexin-3 OS=Mus musculus GN=Nrxn3 PE=1 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 31  ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
           ATFRG E+L YD ++    PI SS D I+L F+T    GLILH  K+
Sbjct: 259 ATFRGSEYLCYDLSQ---NPIQSSSDEITLSFKTWQRNGLILHTGKS 302

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion. May mediate intracellular signaling.

Mus musculus (taxid: 10090)

>sp|Q9Y4C0|NRX3A_HUMAN Neurexin-3 OS=Homo sapiens GN=NRXN3 PE=1 SV=4

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 31  ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
           ATFRG E+L YD ++    PI SS D I+L F+T    GLILH  K+
Sbjct: 259 ATFRGSEYLCYDLSQ---NPIQSSSDEITLSFKTWQRNGLILHTGKS 302

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion. May mediate intracellular signaling.

Homo sapiens (taxid: 9606)

>sp|A1XQX8|NR3AA_DANRE Neurexin-3a OS=Danio rerio GN=nrxn3a PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 31  ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
           ATFRG EF  YD ++    PI SS D I+L F+T    GLILH  K+
Sbjct: 259 ATFRGSEFFCYDLSQ---NPIQSSSDEITLSFKTWQRNGLILHTGKS 302

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion.

Danio rerio (taxid: 7955)

>sp|Q28146|NRX1A_BOVIN Neurexin-1 OS=Bos taurus GN=NRXN1 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 22  GDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
           GD+ K    ATF+G E+  YD ++    PI SS D I+L F+T    GL+LH  K+
Sbjct: 291 GDQGKEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 343

Cell surface protein involved in cell-cell-interactions, excytosis of secretory granules and regulation of signal transmission. Function is isoform-specific. Alpha-type isoforms have a long N-terminus with six laminin G-like domains and play an important role in synaptic signal transmission. Alpha-type isoforms play a role in the regulation of calcium channel activity and Ca(2+)-triggered neurotransmitter release at synapses and at neuromuscular junctions. They play an important role in Ca(2+)-triggered exocytosis of secretory granules in pituitary gland. They may effect their functions at synapses and in endocrine cells via their interactions with proteins from the exocytotic machinery. Likewise, alpha-type isoforms play a role in regulating the activity of postsynaptic NMDA receptors, a subtype of glutamate-gated ion channels (By similarity). Both alpha-type and beta-type isoforms may play a role in the formation or maintenance of synaptic junctions via their interactions (via the extracellular domains) with neuroligin family members, CBLN1 or CBLN2. In vitro, triggers the de novo formation of presynaptic structures. May be involved in specification of excitatory synapses. Alpha-type isoforms were first identified as receptors for alpha-latroxin from spider venom.

Bos taurus (taxid: 9913)

>sp|Q63372|NRX1A_RAT Neurexin-1 OS=Rattus norvegicus GN=Nrxn1 PE=1 SV=3

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 22  GDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
           GD+ K    ATF+G E+  YD ++    PI SS D I+L F+T    GL+LH  K+
Sbjct: 291 GDQGKEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 343

Cell surface protein involved in cell-cell-interactions, excytosis of secretory granules and regulation of signal transmission. Function is isoform-specific. Alpha-type isoforms have a long N-terminus with six laminin G-like domains and play an important role in synaptic signal transmission. Alpha-type isoforms play a role in the regulation of calcium channel activity and Ca(2+)-triggered neurotransmitter release at synapses and at neuromuscular junctions. They play an important role in Ca(2+)-triggered exocytosis of secretory granules in pituitary gland. They may effect their functions at synapses and in endocrine cells via their interactions with proteins from the exocytotic machinery. Likewise, alpha-type isoforms play a role in regulating the activity of postsynaptic NMDA receptors, a subtype of glutamate-gated ion channels (By similarity). Both alpha-type and beta-type isoforms may play a role in the formation or maintenance of synaptic junctions via their interactions (via the extracellular domains) with neuroligin family members, CBLN1 or CBLN2. In vitro, triggers the de novo formation of presynaptic structures. May be involved in specification of excitatory synapses. Alpha-type isoforms were first identified as receptors for alpha-latroxin from spider venom.

Rattus norvegicus (taxid: 10116)

>sp|Q07310|NRX3A_RAT Neurexin-3 OS=Rattus norvegicus GN=Nrxn3 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 10  PRSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTG 69
           P  + L+++     + +  + ATFRG E+L YD ++    PI SS   I+L F+T    G
Sbjct: 242 PGLSHLMMSEQGRSKAREENVATFRGSEYLSYDLSQ---NPIQSSSSEITLSFKTWQRNG 298

Query: 70  LILHADKA 77
           LILH  K+
Sbjct: 299 LILHTGKS 306

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion. May mediate intracellular signaling.

Rattus norvegicus (taxid: 10116)

>sp|A1XQY1|NR3BA_DANRE Neurexin-3b OS=Danio rerio GN=nrxn3b PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 31  ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
           ATFRG E+  YD ++    PI SS D I+L F+T    GLILH  K+
Sbjct: 255 ATFRGSEYFCYDLSQ---NPIQSSSDEITLSFKTWQRNGLILHTGKS 298

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion.

Danio rerio (taxid: 7955)

>sp|Q63374|NRX2A_RAT Neurexin-2 OS=Rattus norvegicus GN=Nrxn2 PE=1 SV=3

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 31  ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
           ATF+G EF  YD   +   PI SS D I+L FRT    GL+LH  K+
Sbjct: 290 ATFKGNEFFCYD---LSHNPIQSSTDEITLAFRTLQRNGLMLHTGKS 333

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion. May mediate intracellular signaling.

Rattus norvegicus (taxid: 10116)

>sp|Q9DDD0|NRX1A_CHICK Neurexin-1 (Fragment) OS=Gallus gallus GN=NRXN1 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 22  GDEDKAPSE----ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
           GD+ K+  +    ATF+G E+  YD ++    PI SS D I+L F+T    GL+LH  K+
Sbjct: 120 GDQGKSKGKEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 176

Neuronal cell surface protein that may be involved in cell recognition and cell adhesion. May mediate intracellular signaling.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
357623568	187	hypothetical protein KGM_05333 [Danaus p	0.520	0.272	0.666	2e-12
357612231	1791	hypothetical protein KGM_17932 [Danaus p	0.520	0.028	0.647	2e-12
347971168	2023	AGAP004066-PA [Anopheles gambiae str. PE	0.520	0.025	0.627	1e-11
170055731	1554	neurexin [Culex quinquefasciatus] gi|167	0.5	0.031	0.653	2e-11
157112562	1558	neurexin [Aedes aegypti] gi|108878011|gb	0.510	0.032	0.62	4e-11
270010294	718	hypothetical protein TcasGA2_TC009676 [T	0.520	0.071	0.549	2e-10
195444236	1867	GK11702 [Drosophila willistoni] gi|19416	0.520	0.027	0.568	5e-10
194765350	1840	GF23380 [Drosophila ananassae] gi|190615	0.520	0.027	0.568	5e-10
442620473	1847	neurexin 1, isoform F [Drosophila melano	0.520	0.027	0.568	5e-10
442620475	1525	neurexin 1, isoform G [Drosophila melano	0.520	0.033	0.568	5e-10

>gi|357623568|gb|EHJ74665.1| hypothetical protein KGM_05333 [Danaus plexippus]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 23  DEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH 73
           + DKAPSEATFRG EFL YD T+ GGEPI+S+QDTISLYF+T+   GL+ +
Sbjct: 73  ERDKAPSEATFRGAEFLSYDLTQTGGEPIVSTQDTISLYFKTRQPNGLLFY 123

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357612231|gb|EHJ67873.1| hypothetical protein KGM_17932 [Danaus plexippus]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 43/51 (84%)

Query: 23 DEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH 73
          +++KAPSEATFRG EFL YD T+ GGEPI+S+QDTISLYF+T+   GL+ +
Sbjct: 5  EKNKAPSEATFRGAEFLSYDLTQTGGEPIVSTQDTISLYFKTRQPNGLLFY 55

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347971168|ref|XP_309618.5| AGAP004066-PA [Anopheles gambiae str. PEST] gi|333466618|gb|EAA05336.6| AGAP004066-PA [Anopheles gambiae str. PEST]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 40/51 (78%)

Query: 23  DEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH 73
           + DKAPSEATFRG EFL YD  + GGEPI+S+QD I+LYFRT+   GL+ +
Sbjct: 453 ERDKAPSEATFRGTEFLSYDLGQTGGEPIVSAQDAITLYFRTRQPNGLLFY 503

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055731|ref|XP_001863712.1| neurexin [Culex quinquefasciatus] gi|167875587|gb|EDS38970.1| neurexin [Culex quinquefasciatus]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 39/49 (79%)

Query: 25 DKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH 73
          DKAPSEATFRG EFL YD  + GGEPI+S+QD I+LYFRT+   GL+ +
Sbjct: 30 DKAPSEATFRGTEFLSYDLGQTGGEPIVSAQDAITLYFRTRQPNGLLFY 78

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112562|ref|XP_001657566.1| neurexin [Aedes aegypti] gi|108878011|gb|EAT42236.1| AAEL006199-PA [Aedes aegypti]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 40/50 (80%)

Query: 24 EDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH 73
          ++KAPSEATFRG EFL YD  + GGEPI+S+QD I+LYFRT+   GL+ +
Sbjct: 31 QNKAPSEATFRGTEFLSYDLGQTGGEPIVSAQDAITLYFRTRQPNGLLFY 80

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010294|gb|EFA06742.1| hypothetical protein TcasGA2_TC009676 [Tribolium castaneum]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 41/51 (80%)

Query: 23  DEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH 73
           ++DKAPSEA FRG EFL YD ++ GGEPI+S+QD+++ YF+T+   GL+ +
Sbjct: 318 EKDKAPSEAVFRGGEFLSYDLSQTGGEPIVSAQDSVTFYFKTRQPNGLLFY 368

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195444236|ref|XP_002069775.1| GK11702 [Drosophila willistoni] gi|194165860|gb|EDW80761.1| GK11702 [Drosophila willistoni]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 39/51 (76%)

Query: 23  DEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH 73
           +++KAPSEATFRG +FL YD  + G EPI+S+QD IS YFRT+   GL+ +
Sbjct: 365 EKEKAPSEATFRGTQFLSYDLGQTGAEPIVSAQDAISFYFRTRQPNGLLFY 415

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194765350|ref|XP_001964790.1| GF23380 [Drosophila ananassae] gi|190615062|gb|EDV30586.1| GF23380 [Drosophila ananassae]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 39/51 (76%)

Query: 23  DEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH 73
           +++KAPSEATFRG +FL YD  + G EPI+S+QD IS YFRT+   GL+ +
Sbjct: 362 EKEKAPSEATFRGTQFLSYDLGQTGAEPIVSAQDAISFYFRTRQPNGLLFY 412

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442620473|ref|NP_001262840.1| neurexin 1, isoform F [Drosophila melanogaster] gi|440217753|gb|AGB96220.1| neurexin 1, isoform F [Drosophila melanogaster]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 39/51 (76%)

Query: 23  DEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH 73
           +++KAPSEATFRG +FL YD  + G EPI+S+QD IS YFRT+   GL+ +
Sbjct: 347 EKEKAPSEATFRGTQFLSYDLGQTGAEPIVSAQDAISFYFRTRQPNGLLFY 397

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442620475|ref|NP_001262841.1| neurexin 1, isoform G [Drosophila melanogaster] gi|440217754|gb|AGB96221.1| neurexin 1, isoform G [Drosophila melanogaster]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 39/51 (76%)

Query: 23  DEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH 73
           +++KAPSEATFRG +FL YD  + G EPI+S+QD IS YFRT+   GL+ +
Sbjct: 347 EKEKAPSEATFRGTQFLSYDLGQTGAEPIVSAQDAISFYFRTRQPNGLLFY 397

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
FB|FBgn0038975	1840	Nrx-1 "Neurexin 1" [Drosophila	0.520	0.027	0.568	3.1e-10
ZFIN|ZDB-GENE-070206-5	1670	nrxn2a "neurexin 2a" [Danio re	0.846	0.049	0.373	3.1e-06
UNIPROTKB|H0YJL2	175	NRXN3 "Neurexin-3-beta, C-term	0.530	0.297	0.436	7.2e-06
UNIPROTKB|D0PRN3	1693	D0PRN3 "Neurexin-3" [Gallus ga	0.755	0.043	0.363	3.6e-05
UNIPROTKB|H7C3D6	206	NRXN2 "Neurexin-2" [Homo sapie	0.448	0.213	0.489	6.7e-05
UNIPROTKB|H7C3J4	215	NRXN2 "Neurexin-2" [Homo sapie	0.448	0.204	0.489	7.5e-05
UNIPROTKB|F1SQJ0	163	LOC100519087 "Uncharacterized	0.448	0.269	0.446	8.5e-05
UNIPROTKB|D4ABV7	1520	D4ABV7 "Uncharacterized protei	0.653	0.042	0.388	0.00014
UNIPROTKB|H7BZC7	293	NRXN2 "Neurexin-2" [Homo sapie	0.448	0.150	0.489	0.00015
UNIPROTKB|F1NLI2	861	F1NLI2 "Uncharacterized protei	0.448	0.051	0.510	0.00019

FB|FBgn0038975 Nrx-1 "Neurexin 1" [Drosophila melanogaster (taxid:7227)]

 Score = 161 (61.7 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 29/51 (56%), Positives = 39/51 (76%)

Query:    23 DEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH 73
             +++KAPSEATFRG +FL YD  + G EPI+S+QD IS YFRT+   GL+ +
Sbjct:   347 EKEKAPSEATFRGTQFLSYDLGQTGAEPIVSAQDAISFYFRTRQPNGLLFY 397

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0007268 "synaptic transmission" evidence=IDA

GO:0050808 "synapse organization" evidence=IDA

GO:0008306 "associative learning" evidence=IDA

GO:0007416 "synapse assembly" evidence=IDA

GO:0031594 "neuromuscular junction" evidence=IDA

ZFIN|ZDB-GENE-070206-5 nrxn2a "neurexin 2a" [Danio rerio (taxid:7955)]

 Score = 123 (48.4 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 34/91 (37%), Positives = 48/91 (52%)

Query:    10 PRSTPLILTTNNGD--EDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHS 67
             P + PL+ T   GD    +  S ATF+G EF  YD ++   +PI SS D I+L FRT   
Sbjct:   258 PGAAPLMATPAAGDPKSGQVESVATFKGNEFFSYDLSQ---KPIQSSTDEITLSFRTLQR 314

Query:    68 TGLILHADKAPSEATFRGLEFLVYEYCLIVH 98
              GL+LH  K+   A +  L       CL+++
Sbjct:   315 NGLLLHTGKS---ADYVNLSLKSGAVCLVIN 342

GO:0007268 "synaptic transmission" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H0YJL2 NRXN3 "Neurexin-3-beta, C-terminal fragment" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 7.2e-06, P = 7.2e-06
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query:    23 DEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
             ++ +  + ATFRG E+L YD ++    PI SS D I+L F+T    GLILH  K+
Sbjct:    16 EQAREENVATFRGSEYLCYDLSQ---NPIQSSSDEITLSFKTWQRNGLILHTGKS 67

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0051965 "positive regulation of synapse assembly" evidence=IEA

GO:0090129 "positive regulation of synapse maturation" evidence=IEA

UNIPROTKB|D0PRN3 D0PRN3 "Neurexin-3" [Gallus gallus (taxid:9031)]

 Score = 113 (44.8 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 28/77 (36%), Positives = 43/77 (55%)

Query:     1 MATHQVYVIPRSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISL 60
             + +  V  IP  + L+++     + +  + ATFRG E+L YD ++    PI SS D I+L
Sbjct:   233 LCSEDVNHIPGLSHLMMSEQGRSKARDENMATFRGSEYLCYDLSQ---NPIQSSSDEITL 289

Query:    61 YFRTKHSTGLILHADKA 77
              F+T    GLILH  K+
Sbjct:   290 SFKTWQRNGLILHTGKS 306

GO:0007416 "synapse assembly" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|H7C3D6 NRXN2 "Neurexin-2" [Homo sapiens (taxid:9606)]

 Score = 98 (39.6 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 23/47 (48%), Positives = 28/47 (59%)

Query:    31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
             ATF+G EF  YD   +   PI SS D I+L FRT    GL+LH  K+
Sbjct:    51 ATFKGNEFFCYD---LSHNPIQSSTDEITLAFRTLQRNGLMLHTGKS 94

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

UNIPROTKB|H7C3J4 NRXN2 "Neurexin-2" [Homo sapiens (taxid:9606)]

 Score = 98 (39.6 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 23/47 (48%), Positives = 28/47 (59%)

Query:    31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
             ATF+G EF  YD   +   PI SS D I+L FRT    GL+LH  K+
Sbjct:    80 ATFKGNEFFCYD---LSHNPIQSSTDEITLAFRTLQRNGLMLHTGKS 123

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

UNIPROTKB|F1SQJ0 LOC100519087 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 94 (38.1 bits), Expect = 8.5e-05, P = 8.5e-05
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query:    31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
             ATF+G E+  YD ++    PI SS D I+L F+T    GL+LH  K+
Sbjct:     7 ATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 50

GO:0090129 "positive regulation of synapse maturation" evidence=IEA

GO:0051965 "positive regulation of synapse assembly" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=IEA

UNIPROTKB|D4ABV7 D4ABV7 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 107 (42.7 bits), Expect = 0.00014, P = 0.00014
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query:    11 RSTPLILTTNNGDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGL 70
             +ST  +     GD+ K    ATF+G E+  YD ++    PI SS D I+L F+T    GL
Sbjct:   274 QSTECLAHLMMGDQGKEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGL 330

Query:    71 ILHADKA 77
             +LH  K+
Sbjct:   331 MLHTGKS 337

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0051965 "positive regulation of synapse assembly" evidence=IEA

GO:0090129 "positive regulation of synapse maturation" evidence=IEA

UNIPROTKB|H7BZC7 NRXN2 "Neurexin-2" [Homo sapiens (taxid:9606)]

 Score = 98 (39.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 23/47 (48%), Positives = 28/47 (59%)

Query:    31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
             ATF+G EF  YD   +   PI SS D I+L FRT    GL+LH  K+
Sbjct:    61 ATFKGNEFFCYD---LSHNPIQSSTDEITLAFRTLQRNGLMLHTGKS 104

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

UNIPROTKB|F1NLI2 F1NLI2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 103 (41.3 bits), Expect = 0.00019, P = 0.00019
 Identities = 24/47 (51%), Positives = 30/47 (63%)

Query:    31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
             ATFRG E+L YD ++    PI SS D I+L F+T    GLILH  K+
Sbjct:    14 ATFRGSEYLCYDLSQ---NPIQSSSDEITLSFKTWQRNGLILHTGKS 57

GO:0004872 "receptor activity" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P9K9	NRX3A_MOUSE	No assigned EC number	0.5106	0.4489	0.0280	yes	N/A
Q9Y4C0	NRX3A_HUMAN	No assigned EC number	0.5106	0.4489	0.0267	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
KOG3514|consensus	1591		99.68
KOG3516|consensus	1306		99.23
cd00110	151	LamG Laminin G domain; Laminin G-like domains are	97.91
smart00282	135	LamG Laminin G domain.	96.88
PF00054	131	Laminin_G_1: Laminin G domain; InterPro: IPR012679	95.95
PF02210	128	Laminin_G_2: Laminin G domain; InterPro: IPR012680	94.11
KOG3514|consensus	1591		91.49
KOG4289|consensus	2531		87.99
KOG1219|consensus	4289		87.5

>KOG3514|consensus

Probab=99.68  E-value=9.2e-17  Score=144.57  Aligned_cols=69  Identities=33%  Similarity=0.503  Sum_probs=65.9

Q ss_pred             CCCCCCCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCCCCCeEEEe---eeeEEEEEE
Q psy6122          22 GDEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        22 ~~~~k~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~~gdyltL~---g~~~l~~~~   93 (98)
                      ..++|+|++|||.|.||++||+++   +||++.+|.|+|.|||+|++|+|||+|++.||+.|.   |+++|++.|
T Consensus       244 cekeK~~~eaTF~G~ef~~YDls~---npI~s~~d~itl~FrT~q~ngllfytG~~~dYlnlaL~dGaV~l~~~l  315 (1591)
T KOG3514|consen  244 CEKEKNDGEATFGGDEFVGYDLSQ---NPIRSKKDNITLTFRTVQGNGLLFYTGDEKDYLNLALQDGAVSLSSKL  315 (1591)
T ss_pred             cccccCcceEEecCceEEEeeccC---CcccccccceEEEEEEecCceeEEEccCCcceeeEeecCCcEEEEEec
Confidence            356999999999999999999999   899999999999999999999999999999999996   999999876

>KOG3516|consensus

Probab=99.23  E-value=1.9e-11  Score=111.00  Aligned_cols=64  Identities=30%  Similarity=0.429  Sum_probs=59.2

Q ss_pred             CceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee-CCCCCeEEEe---eeeEEEEEEE
Q psy6122          28 PSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA-DKAPSEATFR---GLEFLVYEYC   94 (98)
Q Consensus        28 ~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~-G~~gdyltL~---g~~~l~~~~~   94 (98)
                      -+++.|||++++.||+.+   +++++.+|+|+|+|||++++|+|+|+ |++|||++|.   |...|.+|+-
T Consensus       177 s~vi~fdg~s~~~yr~~~---~~m~s~~d~is~~Fkt~~sdGvllh~eg~QGd~itlql~~~kl~l~ld~G  244 (1306)
T KOG3516|consen  177 SPVIYFDGSSSLLYRFHR---KLMSSLKDVISLKFKTMQSDGVLLHGEGQQGDYITLQLIGGKLVLILDLG  244 (1306)
T ss_pred             CceeEECCccceeeeccc---cccccccceeEEEEEeeccceeEEEcccCCCCEEEEEEeCCEEEEEEecC
Confidence            368999999999999999   99999999999999999999999999 9999999996   7777777764

>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

Probab=97.91  E-value=6.5e-05  Score=50.52  Aligned_cols=57  Identities=26%  Similarity=0.427  Sum_probs=45.9

Q ss_pred             EEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCCC--CCeEEEe---eeeEEEEE
Q psy6122          31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA--PSEATFR---GLEFLVYE   92 (98)
Q Consensus        31 atF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~~--gdyltL~---g~~~l~~~   92 (98)
                      ++|+|.+++.|....   .+  .....|++.|||.+.+|+||+.+..  .+|+.|.   |...+.++
T Consensus         2 ~~F~g~~~i~~~~~~---~~--~~~~~i~~~frt~~~~g~l~~~~~~~~~~~~~l~l~~g~l~~~~~   63 (151)
T cd00110           2 VSFSGSSYVRLPTLP---AP--RTRLSISFSFRTTSPNGLLLYAGSQNGGDFLALELEDGRLVLRYD   63 (151)
T ss_pred             eEeCCCceEEecCCC---CC--cceeEEEEEEEeCCCCeEEEEecCCCCCCEEEEEEECCEEEEEEc
Confidence            679999988888765   33  6778899999999999999999554  8898886   75555554

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.

>smart00282 LamG Laminin G domain

Probab=96.88  E-value=0.0038  Score=41.92  Aligned_cols=38  Identities=32%  Similarity=0.433  Sum_probs=31.0

Q ss_pred             CeEEEEEeccccceEEEeeCC--CCCeEEEe---eeeEEEEEE
Q psy6122          56 DTISLYFRTKHSTGLILHADK--APSEATFR---GLEFLVYEY   93 (98)
Q Consensus        56 D~IsL~FKT~q~~GlLlH~G~--~gdyltL~---g~~~l~~~~   93 (98)
                      ..|++.|||.+.+|+||+.+.  ..+|+.+.   |...+.++.
T Consensus         3 ~~i~~~frt~~~~g~l~~~~~~~~~~~l~l~l~~g~l~~~~~~   45 (135)
T smart00282        3 LSISFSFRTTSPNGLLLYAGSKNGGDYLALELRDGRLVLRYDL   45 (135)
T ss_pred             eEEEEEEEeCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEC
Confidence            469999999999999999954  78899986   776666553

>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=95.95  E-value=0.016  Score=39.69  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=26.9

Q ss_pred             EeccccceEEEeeCC--CCCeEEEe---eeeEEEEEE
Q psy6122          62 FRTKHSTGLILHADK--APSEATFR---GLEFLVYEY   93 (98)
Q Consensus        62 FKT~q~~GlLlH~G~--~gdyltL~---g~~~l~~~~   93 (98)
                      |||.+++|+||+.|+  ..||+.|.   |..-+.||+
T Consensus         1 frT~~~~Gllly~g~~~~~dfial~L~~G~l~~~~~~   37 (131)
T PF00054_consen    1 FRTSEPNGLLLYLGSKDGKDFIALELRDGRLEFRYNL   37 (131)
T ss_dssp             EEESSSSEEEEEEESSTTSSEEEEEEETTEEEEEEES
T ss_pred             CccCCCCceEEECCcCCCCCEEEEEEECCEEEEEEeC
Confidence            899999999999944  56899996   888887775

The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....

>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=94.11  E-value=0.092  Score=33.80  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=24.2

Q ss_pred             EeccccceEEEeeCCCC--CeEEEe---eeeEEEEEE
Q psy6122          62 FRTKHSTGLILHADKAP--SEATFR---GLEFLVYEY   93 (98)
Q Consensus        62 FKT~q~~GlLlH~G~~g--dyltL~---g~~~l~~~~   93 (98)
                      |||.+.+|+||+.+...  +|+.|.   |...+.+++
T Consensus         1 Frt~~~~g~Ll~~~~~~~~~~l~l~l~~g~l~~~~~~   37 (128)
T PF02210_consen    1 FRTRSPNGLLLYIGSEDNGDFLSLELVDGRLVVRYNL   37 (128)
T ss_dssp             EEESSSSEEEEEEEESTTSEEEEEEEETTEEEEEEES
T ss_pred             CccCCCCEeEEEEcCCCCCEEEEEEEECCEEEEEEEc
Confidence            89999999999993333  588886   766666543

The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....

>KOG3514|consensus

Probab=91.49  E-value=0.96  Score=43.09  Aligned_cols=64  Identities=14%  Similarity=0.293  Sum_probs=52.6

Q ss_pred             CCCCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee--CCCCCeEEEe---eeeEEEEE
Q psy6122          25 DKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA--DKAPSEATFR---GLEFLVYE   92 (98)
Q Consensus        25 ~k~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~--G~~gdyltL~---g~~~l~~~   92 (98)
                      ++|..++.|+|.++...-+.+    .+.+.-+.|+++|||-++-|+||-+  -.+.|.|.|.   |-+=|.+.
T Consensus       659 erE~t~ls~nGs~~m~i~L~~----~~~tq~E~v~iRF~t~r~~Gll~~Tta~~s~D~l~l~L~~g~vkl~v~  727 (1591)
T KOG3514|consen  659 EREATALSYNGSMSMKIVLPH----TMHTQAEDVSIRFRTQRAYGLLFATTARGSADTLRLELDAGQVKLFVN  727 (1591)
T ss_pred             cceeeeEEEcCeeeEEEEecc----cceeecceEEEEEEecccceeEEEeccCCCCceEEEEEecceEEEEEe
Confidence            578889999999998888864    5778889999999999999999999  5577888775   65555543

>KOG4289|consensus

Probab=87.99  E-value=1.4  Score=43.35  Aligned_cols=55  Identities=22%  Similarity=0.308  Sum_probs=41.8

Q ss_pred             EEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCC-CCCeEEEe---eeeEEEE
Q psy6122          31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK-APSEATFR---GLEFLVY   91 (98)
Q Consensus        31 atF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~-~gdyltL~---g~~~l~~   91 (98)
                      .+|.+++++.++.-.   +..   +-.++|+|.|.+.+|+|++.|+ .-|++.|+   +-+=|.|
T Consensus      1320 rSFp~~sfv~frglr---qRf---h~TlslsfaT~~~nGlL~ynGnekhDFvalevVd~qvqltf 1378 (2531)
T KOG4289|consen 1320 RSFPPESFVTFRGLR---QRF---HFTLSLSFATIERNGLLLYNGNEKHDFVALEVVDEQVQLTF 1378 (2531)
T ss_pred             eccCchheEEEeccc---cce---EEEEEEEEEEeeecceEEecCCcccceEeeeeeeeeEEEEE
Confidence            569999998887755   433   4459999999999999999964 67888886   5544444

>KOG1219|consensus

Probab=87.50  E-value=2.4  Score=43.73  Aligned_cols=61  Identities=16%  Similarity=0.278  Sum_probs=48.2

Q ss_pred             CCCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCCCCCeEEEe---eeeEEEEE
Q psy6122          26 KAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFR---GLEFLVYE   92 (98)
Q Consensus        26 k~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~~gdyltL~---g~~~l~~~   92 (98)
                      +...++++.|.++.-|+++.+     +.+.-.+.++-||.|.+|+++++- .-|++-|+   |..+|.+|
T Consensus      3682 ~g~~elS~tGnSYveyrlse~-----~n~~~kl~frLkT~~sngIiM~tr-~~d~~iLkLv~G~~~l~~~ 3745 (4289)
T KOG1219|consen 3682 QGDFELSSTGNSYVEYRLSEN-----QNTRMKLGFRLKTLQSNGIIMYTR-KTDLAILKLVGGSPQLLAD 3745 (4289)
T ss_pred             CCcceEeecCceeEEEEcccc-----cccceEEEEEEEecccCcEEEEEc-CCceEEEEecCCcEEEEEe
Confidence            345789999999999999872     222256788889999999999995 45677776   88888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
3r05_A	1254	Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6),		7e-05
3qcw_A	1245	Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6),		7e-05
3poy_A	1019	Crystal Structure Of The Alpha-Neurexin-1 Ectodomai		7e-05
2h0b_A	184	Crystal Structure Of The Second LnsLG DOMAIN FROM N		1e-04

>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With Splice Insert Ss3 Length = 1254

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 31  ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
           ATF+G E+  YD ++    PI SS D I+L F+T    GL+LH  K+
Sbjct: 234 ATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 277

>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice Inserts Length = 1245

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 31  ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
           ATF+G E+  YD ++    PI SS D I+L F+T    GL+LH  K+
Sbjct: 234 ATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 277

>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns 2-6 Length = 1019

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
          ATF+G E+  YD ++    PI SS D I+L F+T    GL+LH  K+
Sbjct: 9  ATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKS 52

>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN 1 ALPHA Length = 184

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA 77
          ATF+G E+  YD ++    PI SS D I+L F+T    GL LH  K+
Sbjct: 8  ATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLXLHTGKS 51

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	9e-06
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	5e-05
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-04

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184

 Score = 41.0 bits (96), Expect = 9e-06
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA 74
          ATF+G E+  Y    +   PI SS D I+L F+T    GL+LH 
Sbjct: 8  ATFKGSEYFCY---DLSQNPIQSSSDEITLSFKTLQRNGLMLHT 48

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 27 APSE--ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEA 81
          AP +  A F    FL +         +    +TI L  RT  ++GL+L       EA
Sbjct: 2  APGQYGAYFHDDGFLAFPGHVFS-RSLPEVPETIELEVRTSTASGLLLWQGVEVGEA 57

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 23  DEDKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA 74
            + K    ATF+G E+  YD ++    PI SS D I+L F+T    GL+LH 
Sbjct: 226 SQGKEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHT 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	99.12
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	98.94
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	98.82
3v64_A	191	Low-density lipoprotein receptor-related protein;	98.61
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	98.53
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	98.51
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	98.48
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	98.46
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	98.36
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	98.29
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	98.19
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	98.16
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	97.97
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	97.77
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	97.77
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	97.74
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	97.69
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	97.65
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	97.56
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	97.22
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	97.01
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	96.89
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	96.88

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}

Probab=99.12  E-value=3.1e-10  Score=79.76  Aligned_cols=66  Identities=38%  Similarity=0.595  Sum_probs=58.3

Q ss_pred             CCCCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCCCCCeEEEe---eeeEEEEEE
Q psy6122          25 DKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        25 ~k~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~~gdyltL~---g~~~l~~~~   93 (98)
                      +|++..++|+|.+++.|++..   .++......|++.|||.+++|+|||.|+..||+.|.   |...+.+|+
T Consensus         2 ~~~~~~~~F~G~sy~~~~~~~---~~~~~~~~~isl~frT~~~~GlLl~~g~~~d~l~l~L~~G~l~~~~~~   70 (184)
T 2h0b_A            2 SKEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINL   70 (184)
T ss_dssp             --CCCEEEEESSEEEEEECSS---SCEEESEEEEEEEEEESCSCEEEEEECCTTEEEEEEEETTEEEEEEEE
T ss_pred             CcccceeEECCceEEEEcccc---CccccCccEEEEEEEeCCCCEEEEEeCCCCCEEEEEEECCEEEEEEEC
Confidence            578899999999999999987   777777889999999999999999998889999996   888888875

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=98.94  E-value=2.1e-09  Score=94.81  Aligned_cols=65  Identities=38%  Similarity=0.602  Sum_probs=59.8

Q ss_pred             CCCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCCCCCeEEEe---eeeEEEEEE
Q psy6122          26 KAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        26 k~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~~gdyltL~---g~~~l~~~~   93 (98)
                      ++..+++|+|++++.|++.+   +++.+..+.|+|+|||.+++|+|||+|+.+||+.|.   |...|.+|+
T Consensus       229 ~~~~~~~F~G~~~~~y~~~~---~~~~~~~~~i~l~FrT~~~~GlLl~~g~~~d~l~L~L~~G~l~l~~~l  296 (1245)
T 3qcw_A          229 KEEYIATFKGSEYFCYDLSQ---NPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINL  296 (1245)
T ss_dssp             --CCEEEECSSCEEEEECTT---SCEEESEEEEEEEEECSCSCEEEEEECSSSEEEEEEEETTEEEEEEEE
T ss_pred             cccceeeeCCcEEEEEcccc---CcccccccEEEEEEEeCCCCceEEEecCCCCEEEEEEECCEEEEEEEc
Confidence            45688999999999999998   999999999999999999999999999999999996   999999986

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}

Probab=98.82  E-value=1.3e-08  Score=72.13  Aligned_cols=65  Identities=14%  Similarity=0.316  Sum_probs=52.9

Q ss_pred             CCCCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeC--CCCCeEEEe---eeeEEEEEE
Q psy6122          25 DKAPSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHAD--KAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        25 ~k~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G--~~gdyltL~---g~~~l~~~~   93 (98)
                      +|+...++|+|.+++.|++..    ........|++.|||.+++|+||+.+  +..||+.|.   |...+.||+
T Consensus         2 ~~~~~~~~F~G~sy~~~~~~~----~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~~~~~~   71 (182)
T 2r16_A            2 SREATVLSYDGSMFMKIQLPV----VMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNL   71 (182)
T ss_dssp             ---CCEEEEESSCCEEEEEEE----EEEESEEEEEEEEECSCSSEEEEEEECSSSCCEEEEEEETTEEEEEEES
T ss_pred             CcccccEEECCCceEEEECCC----cCCccceEEEEEEEECCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEC
Confidence            578889999999999998753    23466788999999999999999994  578999996   888888875

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A

Probab=98.61  E-value=2.5e-07  Score=65.88  Aligned_cols=62  Identities=21%  Similarity=0.319  Sum_probs=50.8

Q ss_pred             ceEEEeCCcceEEecccCCCcc----------eeecCCeEEEEEeccccceEEEeeCC---CCCeEEEe---eeeEEEEE
Q psy6122          29 SEATFRGLEFLVYDQTRIGGEP----------IISSQDTISLYFRTKHSTGLILHADK---APSEATFR---GLEFLVYE   92 (98)
Q Consensus        29 ~vatF~G~~~LsYdls~~~gk~----------i~s~~D~IsL~FKT~q~~GlLlH~G~---~gdyltL~---g~~~l~~~   92 (98)
                      +.++|+|.+++.|+...   .+          .......|++.|||.+++|+||+.|.   ..||+.|.   |...+.||
T Consensus         3 ~~~~F~G~sy~~y~~~~---~~~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~~~d~l~l~L~~G~l~~~~~   79 (191)
T 3v64_A            3 ETLAFDGRTYIEYLNAV---IESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAERADYMALAIVDGHLQLSYD   79 (191)
T ss_dssp             CEEEEESSCCEEEECSC---CCHHHHCCCCCCEEESEEEEEEEEECSCSSEEEEEESCCSTTCCEEEEEEETTEEEEEEE
T ss_pred             ccceecCceeEEEcccc---ccccccccccccccccceEEEEEEEeCCCCeEEEEeCCCCCCCcEEEEEEECCEEEEEEE
Confidence            57899999999999864   22          23556789999999999999999955   67999996   88777776


Q ss_pred             E
Q psy6122          93 Y   93 (98)
Q Consensus        93 ~   93 (98)
                      +
T Consensus        80 ~   80 (191)
T 3v64_A           80 L   80 (191)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*

Probab=98.53  E-value=2.2e-07  Score=68.84  Aligned_cols=62  Identities=10%  Similarity=0.097  Sum_probs=50.8

Q ss_pred             ceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee---CCCCCeEEEe---eeeEEEEEE
Q psy6122          29 SEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA---DKAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        29 ~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~---G~~gdyltL~---g~~~l~~~~   93 (98)
                      ++..|+| +++.|++.+.  +......+.|+|.|||.+++|+||+.   +..+||+.|.   |...+.||+
T Consensus        41 y~f~~~g-s~i~y~~~~~--~~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~~dfi~L~L~~G~l~~~~~~  108 (226)
T 2r1d_A           41 YIFSKGG-GQITYKWPPN--DRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNV  108 (226)
T ss_dssp             EEEEEEE-EEEEEECCGG--GCCCBSEEEEEEEEECCCSSEEEEEEEECTTCCCEEEEEEETTEEEEEEES
T ss_pred             EEEecCC-cEEEEECCcc--ccccccccEEEEEEEeCCCCEEEEEecCCCCCCCEEEEEEECCEEEEEEEC
Confidence            4788999 9999999761  23455667999999999999999996   3578999996   888888874

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*

Probab=98.51  E-value=3e-07  Score=67.44  Aligned_cols=65  Identities=12%  Similarity=0.157  Sum_probs=50.6

Q ss_pred             CCceEEEe-CCcceEEecccCCCcceeecCCeEEEEEeccccceEEEe--e-CCCCCeEEEe---eeeEEEEEE
Q psy6122          27 APSEATFR-GLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILH--A-DKAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        27 ~~~vatF~-G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH--~-G~~gdyltL~---g~~~l~~~~   93 (98)
                      +.-..+|. |.+++.|++.+.  ....+..+.|+|.|||.+++|+|||  . +...||+.|.   |...+.||+
T Consensus         9 ~~t~~~F~~g~s~l~y~~~~~--~~~~~~~~~isl~FrT~~~~GlLly~~~~~~~~dfi~LeL~~G~l~~~~~~   80 (220)
T 2r1b_A            9 AGTTYIFSKGGGQITYKWPPN--DRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNV   80 (220)
T ss_dssp             CSSEEEEEEEEEEEEEECCGG--GCCCBSEEEEEEEEECCCSSEEEEEEEESTTCCCEEEEEEETTEEEEEEES
T ss_pred             CCceEEECCCCeEEEEECCCC--CcccccCcEEEEEEEeCCCCEEEEEecCCCCCCCeEEEEEECCEEEEEEEC
Confidence            33457895 668899998651  2345556789999999999999999  4 3578999996   888888875

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}

Probab=98.48  E-value=4.9e-07  Score=64.15  Aligned_cols=65  Identities=15%  Similarity=0.232  Sum_probs=50.5

Q ss_pred             CCCceEEEeCCcceEEecccCCCccee--ecCCeEEEEEeccccceEEEeeCC----CCCeEEEe---eeeEEEEEE
Q psy6122          26 KAPSEATFRGLEFLVYDQTRIGGEPII--SSQDTISLYFRTKHSTGLILHADK----APSEATFR---GLEFLVYEY   93 (98)
Q Consensus        26 k~~~vatF~G~~~LsYdls~~~gk~i~--s~~D~IsL~FKT~q~~GlLlH~G~----~gdyltL~---g~~~l~~~~   93 (98)
                      ..+.+++|+|.+++.|....   ...+  ...-.|++.|||.+++|+||+.+.    .+||+.|.   |...+.+|+
T Consensus         7 ~~~~~~~F~g~syl~~~~~~---~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~~~~d~l~l~L~~G~l~~~~~~   80 (189)
T 3pve_A            7 SRPFLADFNGFSYLELKGLH---TFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHNRHLEFRYDL   80 (189)
T ss_dssp             CCBCCEEEESSCEEEECCGG---GC-------CEEEEEEEESSSCEEEEEEESCC-CCSCEEEEEEETTEEEEEEES
T ss_pred             CCceeeEECCCceEEEcCcc---cccccccceEEEEEEEEeCCCCEEEEEecCCCCCCCCeEEEEEECCEEEEEEec
Confidence            35788999999999998865   3211  346789999999999999999953    58999996   888887774

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*

Probab=98.46  E-value=5.6e-07  Score=63.45  Aligned_cols=64  Identities=13%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             CceEEEe-CCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee---CCCCCeEEEe---eeeEEEEEE
Q psy6122          28 PSEATFR-GLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA---DKAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        28 ~~vatF~-G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~---G~~gdyltL~---g~~~l~~~~   93 (98)
                      .-...|. |.+++.|++.+.  .......+.|++.|||.+++|+|||.   +...||+.|.   |...+.||+
T Consensus         4 ~t~~~F~~~~s~l~y~~~~~--~~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~~dfi~l~L~~G~l~~~~~~   74 (178)
T 3bod_A            4 GSTYIFSKGGGQITYKWPPN--DRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNV   74 (178)
T ss_dssp             SCEEEEEEEEEEEEEECCTT--SCCCBSEEEEEEEEECCCSSEEEEEEEESSSSCCEEEEEEETTEEEEEEES
T ss_pred             ceEEEECCCCcEEEEECCCc--CCCCccccEEEEEEEECCCCEEEEEEcCCCCCCCEEEEEEECCEEEEEEEC
Confidence            3457796 468899998761  23455677999999999999999994   5678999996   888888874

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A

Probab=98.36  E-value=2.2e-06  Score=61.26  Aligned_cols=65  Identities=18%  Similarity=0.369  Sum_probs=48.8

Q ss_pred             ceEEEeCCcceEEecccCCC---------cc-eeecCCeEEEEEeccccceEEEeeCC---CCCeEEEe---eeeEEEEE
Q psy6122          29 SEATFRGLEFLVYDQTRIGG---------EP-IISSQDTISLYFRTKHSTGLILHADK---APSEATFR---GLEFLVYE   92 (98)
Q Consensus        29 ~vatF~G~~~LsYdls~~~g---------k~-i~s~~D~IsL~FKT~q~~GlLlH~G~---~gdyltL~---g~~~l~~~   92 (98)
                      ..++|+|.+++.|.......         .+ .......|++.|||.+.+|+||+.|+   ..||+.|.   |...+.||
T Consensus        13 ~~~~F~G~sy~~~~~~~~~~~~~l~~~~~~~~~~~~~~~is~~frT~~~~GlLl~~g~~~~~~dfl~l~L~~G~l~~~~~   92 (204)
T 1pz7_A           13 EAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMMYD   92 (204)
T ss_dssp             CCEEEESSCCEEEECCSCCC-------CCSSCEEESEEEEEEEEEECCSSEEEEEESCCSTTCCEEEEEEETTEEEEEEE
T ss_pred             cceeECCceeEEEcCcccccccccccccccccccceeEEEEEEEEcCCCCeEEEEeCCCCCCCCeEEEEEECCEEEEEEE
Confidence            45889999999998643000         01 12245679999999999999999965   58999986   88888877


Q ss_pred             E
Q psy6122          93 Y   93 (98)
Q Consensus        93 ~   93 (98)
                      +
T Consensus        93 ~   93 (204)
T 1pz7_A           93 L   93 (204)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A

Probab=98.29  E-value=1.9e-06  Score=61.50  Aligned_cols=63  Identities=22%  Similarity=0.273  Sum_probs=49.7

Q ss_pred             CceEEEeCCcceEEecccCCCcce--eecCCeEEEEEeccccceEEEeeC-------CCCCeEEEe---eeeEEEEEE
Q psy6122          28 PSEATFRGLEFLVYDQTRIGGEPI--ISSQDTISLYFRTKHSTGLILHAD-------KAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        28 ~~vatF~G~~~LsYdls~~~gk~i--~s~~D~IsL~FKT~q~~GlLlH~G-------~~gdyltL~---g~~~l~~~~   93 (98)
                      +..+.|+|.+++.+....   .+.  ......|++.|||.+.+|+||+.|       ...||+.|.   |...+.||+
T Consensus         5 ~~~~~F~G~syl~lp~~~---~~~~~~~~~~~is~~frT~~~~GlLl~~~~~~~~~~~~~d~l~l~L~~G~l~~~~~~   79 (195)
T 3sh4_A            5 QYGAYFHDDGFLAFPGHV---FSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQL   79 (195)
T ss_dssp             TTEEEEEEEEEEEECGGG---GCCCSTTCCEEEEEEEEECCSSEEEEEECCCTTCTTSTTCEEEEEEETTEEEEEEEC
T ss_pred             cccCEECCCEEEEEcccc---ccccccccceEEEEEEEeCCCCcEEEEecccccCCCCCCcEEEEEEeCCEEEEEEEC
Confidence            577999999999987753   222  233568999999999999999985       357999986   888777774

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=98.19  E-value=3.6e-06  Score=65.97  Aligned_cols=58  Identities=21%  Similarity=0.267  Sum_probs=44.4

Q ss_pred             EEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeC--CCCCeEEEe---eeeEEEEEE
Q psy6122          31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHAD--KAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        31 atF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G--~~gdyltL~---g~~~l~~~~   93 (98)
                      .+|+|.+++.|++..   .+  .....|+++|||.+++|+|||.|  +.+||+.|.   |...+.||+
T Consensus        43 ~~F~g~~~~~~~f~~---~~--~~~~~is~~FrT~~~~GlLly~~~~~~~df~~l~L~~G~l~~~~~~  105 (422)
T 1h30_A           43 RMFSGTPVIRLRFKR---LQ--PTRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRY  105 (422)
T ss_dssp             C-----CCEEEECCB---SS--CCCCEEEEEEEECCSSEEEEEEESCTTSEEEEEEEETTEEEEEEEE
T ss_pred             eEECCCceEEEEccC---CC--CCceEEEEEEEeCCCCeEEEEECCCCCCcEEEEEEECCEEEEEEEC
Confidence            689999999998865   32  57789999999999999999994  358999996   888888875

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=98.16  E-value=1.7e-06  Score=70.44  Aligned_cols=58  Identities=14%  Similarity=0.108  Sum_probs=45.6

Q ss_pred             EEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCCC--CCeEEEe---eeeEEEEEE
Q psy6122          31 ATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADKA--PSEATFR---GLEFLVYEY   93 (98)
Q Consensus        31 atF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~~--gdyltL~---g~~~l~~~~   93 (98)
                      ++|+|..+.+|++.     ......+.|+++|||.+++|+|||.|..  +||+.|.   |...+.||+
T Consensus        13 ~~F~g~~~~~y~p~-----~~~~~~~~isl~FrT~~~~glLly~~~~~~~dfl~l~L~~G~l~~~~~~   75 (608)
T 2wjs_A           13 VSSGGDCVRTYRPE-----IKKGSYNNIVVHVKTAVADNLLFYLGSAKFIDFLAIEMRKGKVSFLWDV   75 (608)
T ss_dssp             CC----CEEEECCC-----CSCTTEEEEEEEEEESCSCEEEEEEECSSCSCEEEEEEETTEEEEEEES
T ss_pred             EEcCCCeEEEecCC-----CCCcccceEEEEEecCCCceEEEEeCCCCCCcEEEEEEECCEEEEEEEC
Confidence            78999999999962     3556678899999999999999999554  9999996   888888875

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=97.97  E-value=2.2e-05  Score=60.11  Aligned_cols=63  Identities=21%  Similarity=0.255  Sum_probs=48.9

Q ss_pred             CCceEEEeC--CcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCC--CCCeEEEe---eeeEEEEEE
Q psy6122          27 APSEATFRG--LEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK--APSEATFR---GLEFLVYEY   93 (98)
Q Consensus        27 ~~~vatF~G--~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~--~gdyltL~---g~~~l~~~~   93 (98)
                      .+..++|.+  .+++.|.+..   ... .....|++.|||.+++|+||+.|.  ..||+.|.   |...+.||+
T Consensus        18 ~~~a~~Fg~~~~S~~~~~~~~---~~~-~~~~~is~~frT~~~~GlLly~~~~~~~d~~~l~L~~G~l~~~~~~   87 (383)
T 2jd4_A           18 VAGAHQFGLSQNSHLVLPLQQ---SDV-RKRLQVQLSIRTFASSGLIYYVAHQNQMDYATLQLQEGRLHFMFDL   87 (383)
T ss_dssp             CTTCEECCSSTTCEEEEECCS---CCC-SSEEEEEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEEC
T ss_pred             cCcccccCCCCCeeEEEeCCc---hhc-ccceEEEEEEEcCCCCeEEEEeCCCCCCcEEEEEEECCEEEEEEEC
Confidence            346688876  6889998754   322 345689999999999999999943  58999996   888888874

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=97.77  E-value=5.5e-05  Score=58.47  Aligned_cols=61  Identities=20%  Similarity=0.321  Sum_probs=46.3

Q ss_pred             ceEEEeC--CcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCC--CCCeEEEe---eeeEEEEEE
Q psy6122          29 SEATFRG--LEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK--APSEATFR---GLEFLVYEY   93 (98)
Q Consensus        29 ~vatF~G--~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~--~gdyltL~---g~~~l~~~~   93 (98)
                      ....|.+  .+++.|.+..   ... .....|+++|||.+++|+|||.|.  ..||+.|.   |...+.||+
T Consensus        34 ~a~~Fg~~~~s~~~~~~~~---~~~-~~~~~is~~frT~~~~GlLly~~~~~~~dfi~l~L~~G~l~~~~~~  101 (394)
T 1dyk_A           34 GSKQFGLSRNSHIAIAFDD---TKV-KNRLTIELEVRTEAESGLLFYMARINHADFATVQLRNGFPYFSYDL  101 (394)
T ss_dssp             TCEECCSSTTCEEEEECCG---GGG-SSEEEEEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEES
T ss_pred             cceecCCCCCcEEEEEcCc---ccc-ccceEEEEEEEeCCCCeEEEEcCCCCCCceEEEEEECCEEEEEEEC
Confidence            4455654  5677777754   332 346789999999999999999953  68999996   888888875

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=97.77  E-value=5e-05  Score=58.15  Aligned_cols=61  Identities=16%  Similarity=0.227  Sum_probs=46.7

Q ss_pred             ceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee-CCCCCeEEEe---eeeEEEEEE
Q psy6122          29 SEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA-DKAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        29 ~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~-G~~gdyltL~---g~~~l~~~~   93 (98)
                      ..++|+|.+++.|....   .+. .....|+|.|||.+.+|+||+. ++..||+.|.   |...+.+++
T Consensus       199 ~g~~F~g~sy~~~~~~~---~~~-~~~~~isl~frT~~~~GlLl~~~~~~~d~l~l~L~~G~l~~~~~~  263 (383)
T 2jd4_A          199 EGTFFEGSGYAALVKEG---YKV-RLDLQITLEFRTTSKNGVLLGISSAKVDAIGLEIVDGKVLFHVNN  263 (383)
T ss_dssp             SSEEEEEEEEEEEEEEE---ECC-BSCEEEEEEEEESCSCEEEEEEECSSSCEEEEEEETTEEEEEEES
T ss_pred             cCceECCCeEEEEecCc---ccc-CCceEEEEEEEeCCCCEEEEEecCCCCcEEEEEEECCEEEEEEEC
Confidence            34889999999985322   111 2345899999999999999998 5678999996   887777764

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*

Probab=97.74  E-value=3.9e-05  Score=53.75  Aligned_cols=54  Identities=17%  Similarity=0.151  Sum_probs=40.6

Q ss_pred             EeCCc--ceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCC--CCCeEEEe---eeeEEEEEE
Q psy6122          33 FRGLE--FLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK--APSEATFR---GLEFLVYEY   93 (98)
Q Consensus        33 F~G~~--~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~--~gdyltL~---g~~~l~~~~   93 (98)
                      |.|.+  ++.|...+   .    .+..|++.|||.+++|+||+.+.  ..||+.|.   |...+.||.
T Consensus        10 F~g~s~~~l~f~~~~---~----~~~~is~~FrT~~~~GlLly~~~~~~~df~~l~L~~G~l~~~~~~   70 (170)
T 1d2s_A           10 PGQEPIAVMTFDLTK---I----TKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHN   70 (170)
T ss_dssp             TCCSCSEEEEEEGGG---C----CCCEEEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEES
T ss_pred             CCCCceEEEEecCCC---C----CceEEEEEEEeCCCCEEEEEecCCCCCCEEEEEEeCCEEEEEEEC
Confidence            45554  45666644   1    34589999999999999999943  47999996   888888774

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=97.69  E-value=0.00012  Score=56.94  Aligned_cols=59  Identities=17%  Similarity=0.287  Sum_probs=45.6

Q ss_pred             ceEEEe-CCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee-CCCCCeEEEe---eeeEEEEEE
Q psy6122          29 SEATFR-GLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA-DKAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        29 ~vatF~-G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~-G~~gdyltL~---g~~~l~~~~   93 (98)
                      ..++|. +.+++.+..-+   .   ...-.|+++|||.+++|+||+. |+..||+.|.   |...+.||+
T Consensus         6 ~~v~F~~~~Syl~~p~~~---~---~~~~~is~~frT~~~~GlLly~~~~~~dfi~l~L~~G~l~~~~~~   69 (410)
T 3asi_A            6 DPVTFKTKSSYVALATLQ---A---YTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDL   69 (410)
T ss_dssp             CCEEECSTTCEEEESCCC---C---SSCEEEEEEEECSCSCEEEEEEEBSTTCEEEEEEETTEEEEEEES
T ss_pred             cccEeCCCCeeEEeCCCC---C---CceEEEEEEEEeCCCCeEEEEeCCCCCCEEEEEEECCEEEEEEEC
Confidence            458897 56777765432   1   2345799999999999999998 7778999996   888888874

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=97.65  E-value=9.8e-05  Score=60.10  Aligned_cols=60  Identities=17%  Similarity=0.242  Sum_probs=47.0

Q ss_pred             eEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeC--CCCCeEEEe---eeeEEEEEE
Q psy6122          30 EATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHAD--KAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        30 vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G--~~gdyltL~---g~~~l~~~~   93 (98)
                      .++|+|.+++.|....   . .......|+++|||.+++|+||+.|  ...||+.|.   |...+.||+
T Consensus       205 ~~~F~g~sy~~~~~~~---~-~~~~~~~isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~~~~~~  269 (608)
T 2wjs_A          205 TIQFDGEGYALVSRPI---R-WYPNISTVMFKFRTFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDL  269 (608)
T ss_dssp             CEEEEEEEEEEEECCT---T-CBTTEEEEEEEEEESCSEEEEEEEECTTSSSEEEEEEETTEEEEEEEC
T ss_pred             ceEECCCcceEEeccc---c-CCCcceEEEEEEEeCCCCeEEEEecCCCCCceEEEEEECCEEEEEEEC
Confidence            5999999888876533   2 1234568999999999999999994  357999996   888888874

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*

Probab=97.56  E-value=0.00021  Score=51.03  Aligned_cols=62  Identities=16%  Similarity=0.213  Sum_probs=42.8

Q ss_pred             CCCCceEEEeCCc------ceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCC--CCCeEEEe---eeeEEEEEE
Q psy6122          25 DKAPSEATFRGLE------FLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK--APSEATFR---GLEFLVYEY   93 (98)
Q Consensus        25 ~k~~~vatF~G~~------~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~--~gdyltL~---g~~~l~~~~   93 (98)
                      ++.+..+.|.+..      ++.+....       ..+..|+|.|||.+++|+||+.+.  ..||+.|.   |...+.||.
T Consensus        10 ~~~~~~~~F~~~~~~~~~~y~~~~~~~-------~~~~~is~~frT~~~~GlLly~~~~~~~d~~~l~L~~G~l~~~~~~   82 (205)
T 1f5f_A           10 AHDPPAVHLSNGPGQEPIAVMTFDLTK-------ITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLHN   82 (205)
T ss_dssp             ---CCCEESCCTTCCSCSEEEEEEGGG-------CCCCEEEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEES
T ss_pred             ccCCccEEeccCCCCcEeEEEEECCCC-------CCceEEEEEEEeCCCCEEEEEeCCCCCCCEEEEEEECCEEEEEEEC
Confidence            5566778888643      23333322       233689999999999999999943  46999996   888888874

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=97.22  E-value=0.00057  Score=52.78  Aligned_cols=59  Identities=15%  Similarity=0.161  Sum_probs=45.2

Q ss_pred             eEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee-CCCCCeEEEe---eeeEEEEEE
Q psy6122          30 EATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA-DKAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        30 vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~-G~~gdyltL~---g~~~l~~~~   93 (98)
                      -++|.|.+++.+....    + ......|++.|||.+.+|+||+. +...||+.|.   |...+.+++
T Consensus       213 g~~F~g~gy~~~~~~~----~-~~~~~~is~~frT~~~~GlLl~~~~~~~~~l~l~L~~G~l~~~~~~  275 (394)
T 1dyk_A          213 GTYFDGTGFAKAVGGF----K-VGLDLLVEFEFRTTRPTGVLLGVSSQKMDGMGIEMIDEKLMFHVDN  275 (394)
T ss_dssp             SEEEEEEEEEECCSSB----C-CBSEEEEEEEEEESCSCEEEEEEECSSSCEEEEEEETTEEEEEEES
T ss_pred             CceeCCCceeEEcCCc----c-cCCceEEEEEEEeCCCCEEEEEecCCCCCEEEEEEECCEEEEEEEC
Confidence            3779988887765432    1 12356899999999999999998 6788999986   877777764

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=97.01  E-value=0.0011  Score=51.87  Aligned_cols=54  Identities=11%  Similarity=0.134  Sum_probs=39.7

Q ss_pred             CceEEEeCCcceEEecccCCCcc--e-----eecCCeEEEEEeccccceEEEeeCC-C--CCeEEEe
Q psy6122          28 PSEATFRGLEFLVYDQTRIGGEP--I-----ISSQDTISLYFRTKHSTGLILHADK-A--PSEATFR   84 (98)
Q Consensus        28 ~~vatF~G~~~LsYdls~~~gk~--i-----~s~~D~IsL~FKT~q~~GlLlH~G~-~--gdyltL~   84 (98)
                      +...+|.|.+++.|..+.   .+  .     ....-.|+|.|||++.+|+||+.+. .  .||+.|.
T Consensus       219 ~~g~~F~g~s~~~~~~~~---~~lp~~~~~~~~~~~~is~~fRT~~~~GlLl~~~~~~~~~d~l~l~  282 (422)
T 1h30_A          219 ERGSFYPGSGFAFYSLDY---MRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPDLRAVPLSVA  282 (422)
T ss_dssp             BSSEEECSSCCEEECCCC---BC--------CCBCEEEEEEEEESSSCEEEEEEEEGGGTEEEEEEE
T ss_pred             CCCceECCCeEEEEecCc---cccccccccccccceEEEEEEecCCCCEEEEEecCCCcCCCcEEEE
Confidence            345899999999987654   21  1     1124589999999999999999942 2  6888875

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=96.89  E-value=0.0017  Score=50.31  Aligned_cols=62  Identities=13%  Similarity=0.191  Sum_probs=43.9

Q ss_pred             eEEE-eCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEeeCC---CCCeEEEe---eeeEEEEEE
Q psy6122          30 EATF-RGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHADK---APSEATFR---GLEFLVYEY   93 (98)
Q Consensus        30 vatF-~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~G~---~gdyltL~---g~~~l~~~~   93 (98)
                      ...| .|.+++.|++...  .......+.+++.|||.+.+|+||+.+.   .+||+.|.   |..-+.+++
T Consensus       226 ~~~f~~~~~~~~~~~~~~--~~~~~~~~~i~l~frT~~~~GlLl~~~~~~~~~~~l~l~L~~G~l~~~~~~  294 (410)
T 3asi_A          226 TYIFSKGGGQITYKWPPN--DRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNV  294 (410)
T ss_dssp             EEEEEEEEEEEEEECCTT--CCCCBSEEEEEEEEECCCSEEEEEEEEECTTCCCEEEEEEETTEEEEEEES
T ss_pred             cccccCCCceEEEecCCC--CCccceeeEEEEEEEeCCCCEEEEEEecCCCCCceEEEEEeCCEEEEEEEC
Confidence            4566 4667888887541  1112234579999999999999999832   37999986   777777663

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=96.88  E-value=0.0023  Score=56.76  Aligned_cols=63  Identities=14%  Similarity=0.312  Sum_probs=48.8

Q ss_pred             CCceEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee-C-CCCCeEEEe---eeeEEEEEE
Q psy6122          27 APSEATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA-D-KAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        27 ~~~vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~-G-~~gdyltL~---g~~~l~~~~   93 (98)
                      +...+.|+|.+++.|.+..    ......+.|+++|||.+++|+||+. + ...||+.|.   |..-+.+++
T Consensus       657 ~~~~~~fdGs~~l~~~~~~----~~~~~~~~isl~FrT~~~~GlLl~~~~~~~~d~l~L~L~~G~l~l~~nl  724 (1245)
T 3qcw_A          657 EATVLSYDGSMFMKIQLPV----VMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNL  724 (1245)
T ss_dssp             ECCEEEEESSCCEEEEEEE----EEEESEEEEEEEEECSSSCEEEEEEEBTTBSCEEEEEEETTEEEEEEES
T ss_pred             cccccccCCCCceEEeccc----ccccccceEEEEEEEcCCCEEEEEecCCCCccEEEEEEeCCEEEEEEEC
Confidence            3456899999998887643    3445567899999999999999998 3 468999885   777776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d2r1da1	177	b.29.1.4 (A:36-212) Ligand-binding domain of neure	0.002

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 32.9 bits (74), Expect = 0.002
 Identities = 5/36 (13%), Positives = 14/36 (38%)

Query: 53 SSQDTISLYFRTKHSTGLILHADKAPSEATFRGLEF 88
          +  D +++ F T     +++  D +     +  L  
Sbjct: 27 TRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHI 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d2r1da1	177	Ligand-binding domain of neurexin 1beta {Rat (Ratt	98.39
d1dyka2	185	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	98.29
d1pz7a_	195	Agrin {Chicken (Gallus gallus) [TaxId: 9031]}	98.15
d1dyka1	189	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	97.99
d1h30a1	191	Growth-arrest-specific protein Gas6 {Human (Homo s	97.82
d1d2sa_	170	Sex hormone-binding globulin {Human (Homo sapiens)	97.8
d1h30a2	218	Growth-arrest-specific protein Gas6 {Human (Homo s	97.67

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.39  E-value=4.5e-07  Score=61.32  Aligned_cols=63  Identities=11%  Similarity=0.168  Sum_probs=47.8

Q ss_pred             ceEEE-eCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee-C--CCCCeEEEe---eeeEEEEEE
Q psy6122          29 SEATF-RGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA-D--KAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        29 ~vatF-~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~-G--~~gdyltL~---g~~~l~~~~   93 (98)
                      ..+.| +|.+++.|++++.  ....+..+.|++.|||.+++|+||+. +  ..+||+.|.   |...+.+++
T Consensus         4 ~t~~F~~g~~~i~y~~~~~--~~~~~~~~~is~~FrT~~~~G~Ll~~~~~~~~~~~l~l~l~~G~l~~~~~~   73 (177)
T d2r1da1           4 TTYIFSKGGGQITYKWPPN--DRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNV   73 (177)
T ss_dssp             SEEEEEEEEEEEEEECCGG--GCCCBSEEEEEEEEECCCSSEEEEEEEECTTCCCEEEEEEETTEEEEEEES
T ss_pred             ccEEeCCCCeEEEEECCCc--cCCCccccEEEEEEEeCCCCEEEEEEcCCCCCCcEEEEEEECCEEEEEEcC
Confidence            45667 5688999998761  22335567899999999999999998 3  357898885   887777764

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=6.8e-07  Score=60.93  Aligned_cols=59  Identities=15%  Similarity=0.171  Sum_probs=46.6

Q ss_pred             eEEEeCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee-CCCCCeEEEe---eeeEEEEEE
Q psy6122          30 EATFRGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA-DKAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        30 vatF~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~-G~~gdyltL~---g~~~l~~~~   93 (98)
                      =+.|+|.+++.|..+.   . + ...-.|+++|||.+.+|+||+. ++..||+.|.   |...+.+++
T Consensus         5 G~~F~G~~y~~~~~~~---~-~-~~~~~is~~frT~~~~GlLl~~~~~~~d~~~l~l~~G~l~~~~~~   67 (185)
T d1dyka2           5 GTYFDGTGFAKAVGGF---K-V-GLDLLVEFEFRTTRPTGVLLGVSSQKMDGMGIEMIDEKLMFHVDN   67 (185)
T ss_dssp             SEEEEEEEEEECCSSB---C-C-BSEEEEEEEEEESCSCEEEEEEECSSSCEEEEEEETTEEEEEEES
T ss_pred             ceEECCCceEEEcCCC---C-C-CceEEEEEEEEECCCCEEEEEeCCCCCceEEEEEECCeEEEEEEC
Confidence            3679999998887654   2 1 1223699999999999999998 7788999885   888888875

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.15  E-value=6e-06  Score=56.77  Aligned_cols=67  Identities=16%  Similarity=0.324  Sum_probs=47.4

Q ss_pred             CCceEEEeCCcceEEecccCCCc----------ceeecCCeEEEEEeccccceEEEee---CCCCCeEEEe---eeeEEE
Q psy6122          27 APSEATFRGLEFLVYDQTRIGGE----------PIISSQDTISLYFRTKHSTGLILHA---DKAPSEATFR---GLEFLV   90 (98)
Q Consensus        27 ~~~vatF~G~~~LsYdls~~~gk----------~i~s~~D~IsL~FKT~q~~GlLlH~---G~~gdyltL~---g~~~l~   90 (98)
                      +...++|+|.+++.|........          ........++++|||.+.+|+|||.   ....||+.|.   |...+.
T Consensus         5 ~~~~~~F~G~sy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~frT~~~~GlLly~~~~~~~~df~~l~L~~G~l~~~   84 (195)
T d1pz7a_           5 DAEAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIVDGFVQMM   84 (195)
T ss_dssp             SSCCEEEESSCCEEEECCSCCC-------CCSSCEEESEEEEEEEEEECCSSEEEEEESCCSTTCCEEEEEEETTEEEEE
T ss_pred             cccCEEECCceEEEEecccccccccccccccccccccceeEEEEEEEeCCCCEEEEEEcCCCCCCCEEEEEEECCEEEEE
Confidence            34568899999999976442111          0111234699999999999999997   3466798885   887777


Q ss_pred             EEE
Q psy6122          91 YEY   93 (98)
Q Consensus        91 ~~~   93 (98)
                      +++
T Consensus        85 ~~~   87 (195)
T d1pz7a_          85 YDL   87 (195)
T ss_dssp             EES
T ss_pred             EEc
Confidence            764

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=9.3e-06  Score=55.52  Aligned_cols=63  Identities=19%  Similarity=0.298  Sum_probs=46.4

Q ss_pred             CCceEEE--eCCcceEEecccCCCcceeecCCeEEEEEeccccceEEEee--CCCCCeEEEe---eeeEEEEEE
Q psy6122          27 APSEATF--RGLEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA--DKAPSEATFR---GLEFLVYEY   93 (98)
Q Consensus        27 ~~~vatF--~G~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~--G~~gdyltL~---g~~~l~~~~   93 (98)
                      .++.+.|  .+.+++.|.+.+   ... ..+..|+++|||.+.+|+||+.  ....||+.|.   |...+.+|+
T Consensus        13 ~~~~~~fg~s~~s~~~~~~~~---~~~-~~~~~i~~~frT~~~~GlL~~~~~~~~~dfi~l~l~~G~l~~~~~~   82 (189)
T d1dyka1          13 LTGSKQFGLSRNSHIAIAFDD---TKV-KNRLTIELEVRTEAESGLLFYMARINHADFATVQLRNGFPYFSYDL   82 (189)
T ss_dssp             CTTCEECCSSTTCEEEEECCG---GGG-SSEEEEEEEEEECCSCEEEEEEECTTSSSEEEEEEETTEEEEEEES
T ss_pred             ccCceecCCCCCceEEEecCc---ccc-cccEEEEEEEEECCCCEEEEEEcCCCCCcEEEEEEECCEEEEEEEC
Confidence            4556677  445677777765   322 2445799999999999999998  4577899885   888777764

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=2.5e-05  Score=52.98  Aligned_cols=41  Identities=22%  Similarity=0.287  Sum_probs=33.0

Q ss_pred             ecCCeEEEEEeccccceEEEee-CC-CCCeEEEe---eeeEEEEEE
Q psy6122          53 SSQDTISLYFRTKHSTGLILHA-DK-APSEATFR---GLEFLVYEY   93 (98)
Q Consensus        53 s~~D~IsL~FKT~q~~GlLlH~-G~-~gdyltL~---g~~~l~~~~   93 (98)
                      ..+..|+++|||.+++|+||+. +. ..||+.|.   |...+.+++
T Consensus        56 ~~~~~i~~~FrT~~~~GlL~~~~~~~~~~fi~l~l~~G~l~~~~~~  101 (191)
T d1h30a1          56 PTRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRY  101 (191)
T ss_dssp             CCCCEEEEEEEECCSSEEEEEEESCTTSEEEEEEEETTEEEEEEEE
T ss_pred             CCceEEEEEEEeCCCCeEEEEEcCCCCCcEEEEEEECCEEEEEEEc
Confidence            4567899999999999999999 33 45799886   877777764

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=2.4e-05  Score=52.80  Aligned_cols=50  Identities=16%  Similarity=0.236  Sum_probs=38.7

Q ss_pred             CcceEEecccCCCcceeecCCeEEEEEeccccceEEEee--CCCCCeEEEe---eeeEEEEE
Q psy6122          36 LEFLVYDQTRIGGEPIISSQDTISLYFRTKHSTGLILHA--DKAPSEATFR---GLEFLVYE   92 (98)
Q Consensus        36 ~~~LsYdls~~~gk~i~s~~D~IsL~FKT~q~~GlLlH~--G~~gdyltL~---g~~~l~~~   92 (98)
                      .+.++|+..+       ..+..|+++|||.+.+|+|||.  .++.||+.|.   |...+.|+
T Consensus        15 ~~~~~~~~~~-------~~~~~isf~FrT~~~~GlL~~~~~~~~~~fi~L~L~~G~l~~~~~   69 (170)
T d1d2sa_          15 IAVMTFDLTK-------ITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQLH   69 (170)
T ss_dssp             SEEEEEEGGG-------CCCCEEEEEEEESCSSEEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred             eEEEEEeccC-------CceeEEEEEEEECCCCEEEEEEcCCCCCcEEEEEEECCEEEEEEe
Confidence            3456777765       3466799999999999999998  5567899996   77666665

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=2.4e-05  Score=53.93  Aligned_cols=51  Identities=12%  Similarity=0.161  Sum_probs=36.4

Q ss_pred             EEEeCCcceEEecccCCCcceeec-------CCeEEEEEeccccceEEEee-CCCCCeEEEe
Q psy6122          31 ATFRGLEFLVYDQTRIGGEPIISS-------QDTISLYFRTKHSTGLILHA-DKAPSEATFR   84 (98)
Q Consensus        31 atF~G~~~LsYdls~~~gk~i~s~-------~D~IsL~FKT~q~~GlLlH~-G~~gdyltL~   84 (98)
                      ..|+|..+..|+.+.   .++...       .-.|+|+|||.+.+|+||+. ++..+++.|.
T Consensus        18 ~~F~G~g~~~~~~~~---~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~~~~~l~   76 (218)
T d1h30a2          18 SFYPGSGFAFYSLDY---MRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPDLRAVPLS   76 (218)
T ss_dssp             EEECSSCCEEECCCC---BC--------CCBCEEEEEEEEESSSCEEEEEEEEGGGTEEEEE
T ss_pred             cEeCCCEEEEEeccc---cccccccccccceeEEEEEEEEcCCCCcEEEEEecCCCceEEEE
Confidence            479999999987654   222211       22599999999999999998 5556666664