Psyllid ID: psy6156

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSIRSLERVCSVLILTS
Secondary Structure (PSIPRED)
cHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHcccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccHHHHHEEEEEcc
Coil and Loop (DISEMBL)
MLTKVIEqngkgpvelflpnIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEqngkgpvelflpnIMPALLQAYENQDSCVRKCSVFCMVALYKEFgesvlspyinKLSGAKLKLLQLYIKRsqthsssvptslsiRSLERVCSVLILTS
Flexible Loop (DISEMBL)
mltkvieqngkgpvelFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRsqthsssvptslsirslervCSVLILTS
Low Complexity Region (SEG)
MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSIRSLERVCSVLILTS
Disordered region (IsUnstruct)
************PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKR*************IRSLERVCSVLIL**
Disordered Region (DISOPRED)
*LTKV**QNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQL***********************VCSVLILT*
Disordered Region (DISEMBL)
MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKR************SIRSLERVCSVLILTS
Disordered Region (DISPRO)
MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQT************SLERVCSVLILTS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSIRSLERVCSVLILTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
A1A5K2	1456	CLIP-associating protein	N/A	N/A	0.556	0.067	0.545	1e-24
A1A5G0	1452	CLIP-associating protein	yes	N/A	0.556	0.067	0.545	1e-24
O75122	1294	CLIP-associating protein	yes	N/A	0.607	0.082	0.504	1e-24
Q99JD4	1286	CLIP-associating protein	yes	N/A	0.607	0.083	0.504	2e-24
Q8BRT1	1286	CLIP-associating protein	yes	N/A	0.607	0.083	0.495	3e-24
Q4U0G1	1460	CLIP-associating protein	N/A	N/A	0.556	0.067	0.535	3e-24
Q6NYW6	1288	CLIP-associating protein	no	N/A	0.551	0.075	0.530	6e-23
Q7Z460	1538	CLIP-associating protein	no	N/A	0.556	0.063	0.515	1e-22
Q80TV8	1535	CLIP-associating protein	no	N/A	0.556	0.063	0.515	2e-22
Q9NBD7	1491	CLIP-associating protein	yes	N/A	0.812	0.095	0.318	1e-12

>sp|A1A5K2|CLA1B_XENLA CLIP-associating protein 1-B OS=Xenopus laevis GN=clasp1b PE=1 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM TKVIE+  K  +   LP+I+P LLQ Y+N +S VRK S
Sbjct: 1343 KVLCPIIQTADYPINLAAIKMQTKVIERISKESLHQILPDIIPGLLQGYDNTESSVRKAS 1402

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQ 150
            VFC+VA+Y   GE  L PY+ +L+G+K+KLL LYIKR+Q
Sbjct: 1403 VFCLVAVYSVIGEE-LKPYLAQLTGSKMKLLNLYIKRAQ 1440

Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules during anaphase. Plays a crucial role in chromatin-induced microtubule formation. May also act at microtubule minus ends. May be involved in the nucleation of noncentrosomal microtubules originating from the trans-Golgi network (TGN).
Xenopus laevis (taxid: 8355)

>sp|A1A5G0|CLAP1_XENTR CLIP-associating protein 1 OS=Xenopus tropicalis GN=clasp1 PE=1 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM TKVIE+  K  +   LP+I+P LLQ Y+N +S VRK S
Sbjct: 1339 KVLCPIIQTADYPINLAAIKMQTKVIERISKESLHQILPDIIPGLLQGYDNTESSVRKAS 1398

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQ 150
            VFC+VA+Y   GE  L PY+ +L+G K+KLL LYIKR+Q
Sbjct: 1399 VFCLVAIYSVIGEE-LKPYLAQLTGGKMKLLNLYIKRAQ 1436

Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules during anaphase. Plays a crucial role in chromatin-induced microtubule formation. May also act at microtubule minus ends. May be involved in the nucleation of noncentrosomal microtubules originating from the trans-Golgi network (TGN).

Xenopus tropicalis (taxid: 8364)

>sp|O75122|CLAP2_HUMAN CLIP-associating protein 2 OS=Homo sapiens GN=CLASP2 PE=1 SV=2

 Score =  112 bits (280), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 78/109 (71%), Gaps = 2/109 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM TKVIE+  K  + L LP IMP L+Q Y+N +S VRK  
Sbjct: 1181 KVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKAC 1240

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSV-PTS 159
            VFC+VA++   G+  L P++++L+G+K+KLL LYIKR+QT S    PT+
Sbjct: 1241 VFCLVAVHAVIGDE-LKPHLSQLTGSKMKLLNLYIKRAQTGSGGADPTT 1288

Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules. Involved in the nucleation of noncentrosomal microtubules originating from the trans-Golgi network (TGN). Required for the polarization of the cytoplasmic microtubule arrays in migrating cells towards the leading edge of the cell. May act at the cell cortex to enhance the frequency of rescue of depolymerizing microtubules by attaching their plus-ends to cortical platforms composed of ERC1 and PHLDB2. This cortical microtubule stabilizing activity is regulated at least in part by phosphatidylinositol 3-kinase signaling. Also performs a similar stabilizing function at the kinetochore which is essential for the bipolar alignment of chromosomes on the mitotic spindle. Acts as a mediator of ERBB2-dependent stabilization of microtubules at the cell cortex.

Homo sapiens (taxid: 9606)

>sp|Q99JD4|CLAP2_RAT CLIP-associating protein 2 OS=Rattus norvegicus GN=Clasp2 PE=2 SV=1

 Score =  111 bits (278), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 79/109 (72%), Gaps = 2/109 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM TKVIE+  K  + L LP IMP L+Q Y+N +S VRK  
Sbjct: 1173 KVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKAC 1232

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSV-PTS 159
            VFC+VA++   G+  L P++++L+G+K+KLL LYIKR+QT S+   PT+
Sbjct: 1233 VFCLVAVHAVIGDE-LKPHLSQLTGSKMKLLNLYIKRAQTGSAGADPTT 1280

Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules. Involved in the nucleation of noncentrosomal microtubules originating from the trans-Golgi network (TGN). Required for the polarization of the cytoplasmic microtubule arrays in migrating cells towards the leading edge of the cell. May act at the cell cortex to enhance the frequency of rescue of depolymerizing microtubules by attaching their plus-ends to cortical platforms composed of ERC1 and PHLDB2. This cortical microtubule stabilizing activity is regulated at least in part by phosphatidylinositol 3-kinase signaling. Also performs a similar stabilizing function at the kinetochore which is essential for the bipolar alignment of chromosomes on the mitotic spindle. Acts as a mediator of ERBB2-dependent stabilization of microtubules at the cell cortex.

Rattus norvegicus (taxid: 10116)

>sp|Q8BRT1|CLAP2_MOUSE CLIP-associating protein 2 OS=Mus musculus GN=Clasp2 PE=1 SV=1

 Score =  111 bits (277), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/109 (49%), Positives = 79/109 (72%), Gaps = 2/109 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM TKVIE+  K  + + LP IMP L+Q Y+N +S VRK  
Sbjct: 1173 KVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNMLLPEIMPGLIQGYDNSESSVRKAC 1232

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSV-PTS 159
            VFC+VA++   G+  L P++++L+G+K+KLL LYIKR+QT S+   PT+
Sbjct: 1233 VFCLVAVHAVIGDE-LKPHLSQLTGSKMKLLNLYIKRAQTGSAGADPTA 1280

Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules. Involved in the nucleation of noncentrosomal microtubules originating from the trans-Golgi network (TGN). Required for the polarization of the cytoplasmic microtubule arrays in migrating cells towards the leading edge of the cell. May act at the cell cortex to enhance the frequency of rescue of depolymerizing microtubules by attaching their plus-ends to cortical platforms composed of ERC1 and PHLDB2. This cortical microtubule stabilizing activity is regulated at least in part by phosphatidylinositol 3-kinase signaling. Also performs a similar stabilizing function at the kinetochore which is essential for the bipolar alignment of chromosomes on the mitotic spindle. Acts as a mediator of ERBB2-dependent stabilization of microtubules at the cell cortex.

Mus musculus (taxid: 10090)

>sp|Q4U0G1|CLA1A_XENLA CLIP-associating protein 1-A OS=Xenopus laevis GN=clasp1-a PE=2 SV=2

 Score =  110 bits (276), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/99 (53%), Positives = 72/99 (72%), Gaps = 1/99 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM  KVIE+  K  +   LP+I+P LLQ Y+N +S VRK S
Sbjct: 1347 KVLCPIIQTADYPINLAAIKMQAKVIERISKESLHQILPDIIPGLLQGYDNTESSVRKAS 1406

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQ 150
            VFC+VA+Y   GE  L PY+ +L+G+K+KLL LYIKR+Q
Sbjct: 1407 VFCLVAIYSVIGEE-LKPYLAQLTGSKMKLLNLYIKRAQ 1444

Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules during anaphase. Plays a crucial role in chromatin-induced microtubule formation. May also act at microtubule minus ends. May be involved in the nucleation of noncentrosomal microtubules originating from the trans-Golgi network (TGN).

Xenopus laevis (taxid: 8355)

>sp|Q6NYW6|CLAP2_DANRE CLIP-associating protein 2 OS=Danio rerio GN=clasp2 PE=2 SV=1

 Score =  106 bits (265), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/98 (53%), Positives = 73/98 (74%), Gaps = 1/98 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I + ++PINL AIKMLTKVI++  K  +   LP I+P L+Q Y+N +S VRK  
Sbjct: 1174 KVLCPIIQSADYPINLAAIKMLTKVIDRLPKEGLIQMLPEIVPGLIQGYDNSESSVRKAC 1233

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRS 149
            VFC+VA+Y   GE  L P++++LSG+KLKLL LYIKR+
Sbjct: 1234 VFCLVAIYAVIGED-LKPHLSQLSGSKLKLLNLYIKRA 1270

Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules. May be involved in the nucleation of noncentrosomal microtubules originating from the trans-Golgi network (TGN). Required for the polarization of the cytoplasmic microtubule arrays in migrating cells towards the leading edge of the cell. Also performs a similar stabilizing function at the kinetochore which is essential for the bipolar alignment of chromosomes on the mitotic spindle.

Danio rerio (taxid: 7955)

>sp|Q7Z460|CLAP1_HUMAN CLIP-associating protein 1 OS=Homo sapiens GN=CLASP1 PE=1 SV=1

 Score =  105 bits (262), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/99 (51%), Positives = 72/99 (72%), Gaps = 1/99 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM TKV+E+  K  +   L +I+P LLQ Y+N +S VRK S
Sbjct: 1425 KVLCPIIQTADYPINLAAIKMQTKVVERIAKESLLQLLVDIIPGLLQGYDNTESSVRKAS 1484

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQ 150
            VFC+VA+Y   GE  L P++ +L+G+K+KLL LYIKR+Q
Sbjct: 1485 VFCLVAIYSVIGED-LKPHLAQLTGSKMKLLNLYIKRAQ 1522

Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules. Involved in the nucleation of noncentrosomal microtubules originating from the trans-Golgi network (TGN). Required for the polarization of the cytoplasmic microtubule arrays in migrating cells towards the leading edge of the cell. May act at the cell cortex to enhance the frequency of rescue of depolymerizing microtubules by attaching their plus-ends to cortical platforms composed of ERC1 and PHLDB2. This cortical microtubule stabilizing activity is regulated at least in part by phosphatidylinositol 3-kinase signaling. Also performs a similar stabilizing function at the kinetochore which is essential for the bipolar alignment of chromosomes on the mitotic spindle.

Homo sapiens (taxid: 9606)

>sp|Q80TV8|CLAP1_MOUSE CLIP-associating protein 1 OS=Mus musculus GN=Clasp1 PE=1 SV=2

 Score =  104 bits (260), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/99 (51%), Positives = 72/99 (72%), Gaps = 1/99 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM TKV+E+  K  +   L +I+P LLQ Y+N +S VRK S
Sbjct: 1422 KVLCPIIQTADYPINLAAIKMQTKVVERITKESLLQLLVDIIPGLLQGYDNTESSVRKAS 1481

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQ 150
            VFC+VA+Y   GE  L P++ +L+G+K+KLL LYIKR+Q
Sbjct: 1482 VFCLVAIYSVIGED-LKPHLAQLTGSKMKLLNLYIKRAQ 1519

Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules. Involved in the nucleation of noncentrosomal microtubules originating from the trans-Golgi network (TGN). Required for the polarization of the cytoplasmic microtubule arrays in migrating cells towards the leading edge of the cell. May act at the cell cortex to enhance the frequency of rescue of depolymerizing microtubules by attaching their plus-ends to cortical platforms composed of ERC1 and PHLDB2. This cortical microtubule stabilizing activity is regulated at least in part by phosphatidylinositol 3-kinase signaling. Also performs a similar stabilizing function at the kinetochore which is essential for the bipolar alignment of chromosomes on the mitotic spindle.

Mus musculus (taxid: 10090)

>sp|Q9NBD7|CLASP_DROME CLIP-associating protein OS=Drosophila melanogaster GN=chb PE=1 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 14/157 (8%)

Query: 17   FLPNIMPALLQAYENQDSCVRKC-SVFCMVA----LYKVTRILFPLIIAEEHPINLVAIK 71
            FL  I+  ++Q Y++    +R   S+   +A    L     I+ P+I   E P NL AIK
Sbjct: 1334 FLELILLKIIQCYQHSKEALRDIDSMIPRIAPSLPLDLSINIVNPVIATGEFPTNLCAIK 1393

Query: 72   MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI 131
            +L +V E +G    +  L  + P L ++ ++  S VRK +VFC+V LY   GE  + P +
Sbjct: 1394 ILLEVTEHHGSEITDAHLDIVFPNLARSADDTQSMVRKAAVFCIVKLYFVLGEEKVKPKL 1453

Query: 132  NKLSGAKLKLLQLYIKR---------SQTHSSSVPTS 159
            + L+ +K++LL +YI++         S T +SS  +S
Sbjct: 1454 SVLNPSKVRLLNVYIEKQRNCISGGGSSTKNSSAASS 1490

Microtubule plus-end tracking protein that promotes the stabilization of dynamic microtubules. Required for several aspects of mitotic spindle formation including the formation of the overlapping central spindle microtubules and kinetochore attachment. Required for the incorporation of tubulin subunits at the plus ends of kinetochore microtubules during poleward microtubule flux. Acts antagonistically to Klp10A and Klp67A to maintain metaphase spindle length. Also required for guidance of CNS axons downstream of Abl. May function to identify a subset of microtubules that probe the peripheral growth cone domain, where guidance signals exert their influence on cytoskeletal organization. Also required during oogenesis for the organization of the polarized microtubule network inside the 16-cell cyst that ensures oocyte differentiation.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
328717974	1349	PREDICTED: CLIP-associating protein 1-li	0.704	0.091	0.5	9e-28
432849101	1499	PREDICTED: CLIP-associating protein 1-li	0.562	0.066	0.53	1e-23
426249038	1294	PREDICTED: CLIP-associating protein 2 [O	0.607	0.082	0.513	2e-23
330417922	1514	CLIP-associating protein 2 [Bos taurus]	0.607	0.070	0.513	3e-23
296475125	1506	TPA: cytoplasmic linker associated prote	0.607	0.071	0.513	4e-23
410906415	1558	PREDICTED: CLIP-associating protein 1-li	0.562	0.063	0.53	4e-23
260794420	228	hypothetical protein BRAFLDRAFT_114838 [	0.755	0.583	0.435	5e-23
348534531	1561	PREDICTED: CLIP-associating protein 1-li	0.562	0.063	0.52	5e-23
205277358	1456	CLIP-associating protein 1-B [Xenopus la	0.556	0.067	0.545	5e-23
148237657	1452	CLIP-associating protein 1 [Xenopus (Sil	0.556	0.067	0.545	6e-23

>gi|328717974|ref|XP_003246351.1| PREDICTED: CLIP-associating protein 1-like [Acyrthosiphon pisum]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 63/126 (50%), Positives = 89/126 (70%), Gaps = 2/126 (1%)

Query: 38   KCSVFCMVALY--KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPA 95
            +CS    ++L    V R++ PLI A+E P+NL+AIKM+TK+++  G  PV + +  IMP 
Sbjct: 1224 ECSFALSISLQPETVVRVITPLISAKEFPVNLMAIKMMTKLVDMYGSPPVAVQMKEIMPG 1283

Query: 96   LLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSS 155
            LLQ Y+N DS VRK +VFCMV+L+K FGE   +P+I+ L+GAKLKLL LYI+R+Q  S +
Sbjct: 1284 LLQGYDNPDSAVRKSAVFCMVSLHKVFGEQEFAPHISSLNGAKLKLLNLYIERAQQSSPT 1343

Query: 156  VPTSLS 161
             P + S
Sbjct: 1344 SPKTTS 1349

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432849101|ref|XP_004066533.1| PREDICTED: CLIP-associating protein 1-like [Oryzias latipes]

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/100 (53%), Positives = 74/100 (74%), Gaps = 1/100 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P++   ++PINL AIKM T+ IE+  K P+   LP+I+P LLQ Y+N +S VRK S
Sbjct: 1387 KVLCPIVQTADYPINLAAIKMQTRAIERISKEPLHQLLPDIIPGLLQGYDNTESSVRKAS 1446

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQT 151
            VFC+VA+Y   GE  L PY+ +L+G+K+KLL LYIKR+QT
Sbjct: 1447 VFCLVAIYSVIGEE-LKPYLAQLTGSKMKLLNLYIKRAQT 1485

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426249038|ref|XP_004018259.1| PREDICTED: CLIP-associating protein 2 [Ovis aries]

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 79/109 (72%), Gaps = 2/109 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM TKVIE+  K  + L LP IMP L+Q Y+N +S VRK  
Sbjct: 1181 KVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKAC 1240

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSV-PTS 159
            VFC+VA++   G+  L P++++L+G+K+KLL LYIKR+QT S  V PT+
Sbjct: 1241 VFCLVAVHAVIGDE-LKPHLSQLTGSKMKLLNLYIKRAQTGSGGVDPTT 1288

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|330417922|ref|NP_001178130.2| CLIP-associating protein 2 [Bos taurus]

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 79/109 (72%), Gaps = 2/109 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM TKVIE+  K  + L LP IMP L+Q Y+N +S VRK  
Sbjct: 1401 KVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKAC 1460

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSV-PTS 159
            VFC+VA++   G+  L P++++L+G+K+KLL LYIKR+QT S  V PT+
Sbjct: 1461 VFCLVAVHAVIGDE-LKPHLSQLTGSKMKLLNLYIKRAQTGSGGVDPTT 1508

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296475125|tpg|DAA17240.1| TPA: cytoplasmic linker associated protein 2 [Bos taurus]

 Score =  113 bits (282), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/109 (51%), Positives = 79/109 (72%), Gaps = 2/109 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM TKVIE+  K  + L LP IMP L+Q Y+N +S VRK  
Sbjct: 1393 KVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKAC 1452

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSV-PTS 159
            VFC+VA++   G+  L P++++L+G+K+KLL LYIKR+QT S  V PT+
Sbjct: 1453 VFCLVAVHAVIGDE-LKPHLSQLTGSKMKLLNLYIKRAQTGSGGVDPTT 1500

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410906415|ref|XP_003966687.1| PREDICTED: CLIP-associating protein 1-like [Takifugu rubripes]

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/100 (53%), Positives = 74/100 (74%), Gaps = 1/100 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P++   ++PINL AIKM TK IE+  K P+   L +I+P LLQ Y+N +S VRK S
Sbjct: 1447 KVLCPIVQTADYPINLAAIKMQTKAIERITKEPLHQLLSDIIPGLLQGYDNTESSVRKAS 1506

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQT 151
            VFC+VA+Y   GE  L PY+++L+G+K+KLL LYIKR+QT
Sbjct: 1507 VFCLVAIYSVIGEE-LKPYLSQLTGSKMKLLNLYIKRAQT 1545

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260794420|ref|XP_002592207.1| hypothetical protein BRAFLDRAFT_114838 [Branchiostoma floridae] gi|229277422|gb|EEN48218.1| hypothetical protein BRAFLDRAFT_114838 [Branchiostoma floridae]

 Score =  112 bits (281), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 88/140 (62%), Gaps = 7/140 (5%)

Query: 25  LLQAYEN-QDSCVRKCSVFCMVALYKV-----TRILFPLIIAEEHPINLVAIKMLTKVIE 78
           +L+A+++ Q   VR     C  A   +      R+L P++   E+PINL AIKMLTKV+E
Sbjct: 90  ILEAHKDVQKEVVRAAEETCSTAANSLQAEQCVRVLCPIVQTAEYPINLAAIKMLTKVVE 149

Query: 79  QNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAK 138
              K  +   L  IMP LLQ Y+NQ+S VRK SVF +VAL+   G+  L P+++ L+G+K
Sbjct: 150 MMDKDLLSPLLDGIMPGLLQGYDNQESSVRKASVFALVALHTVLGDE-LKPHLSSLTGSK 208

Query: 139 LKLLQLYIKRSQTHSSSVPT 158
           +KLL LYIKR++  S+S  +
Sbjct: 209 MKLLNLYIKRAEGGSASAAS 228

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348534531|ref|XP_003454755.1| PREDICTED: CLIP-associating protein 1-like [Oreochromis niloticus]

 Score =  112 bits (281), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 52/100 (52%), Positives = 74/100 (74%), Gaps = 1/100 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P++   ++PINL AIKM T+ IE+  + P+   LP+I+P LLQ Y+N +S VRK S
Sbjct: 1449 KVLCPIVQTADYPINLAAIKMQTRAIERITREPLHQLLPDIIPGLLQGYDNTESSVRKAS 1508

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQT 151
            VFC+VA+Y   GE  L PY+ +L+G+K+KLL LYIKR+QT
Sbjct: 1509 VFCLVAIYSVIGEE-LKPYLAQLTGSKMKLLNLYIKRAQT 1547

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|205277358|ref|NP_001128506.1| CLIP-associating protein 1-B [Xenopus laevis] gi|306755657|sp|A1A5K2.1|CLA1B_XENLA RecName: Full=CLIP-associating protein 1-B; AltName: Full=Cytoplasmic linker-associated protein 1-B; AltName: Full=Protein Orbit homolog; Short=Xorbit; Short=Xorbit/CLASP gi|118763664|gb|AAI28691.1| Clasp1b protein [Xenopus laevis]

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 73/99 (73%), Gaps = 1/99 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM TKVIE+  K  +   LP+I+P LLQ Y+N +S VRK S
Sbjct: 1343 KVLCPIIQTADYPINLAAIKMQTKVIERISKESLHQILPDIIPGLLQGYDNTESSVRKAS 1402

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQ 150
            VFC+VA+Y   GE  L PY+ +L+G+K+KLL LYIKR+Q
Sbjct: 1403 VFCLVAVYSVIGEE-LKPYLAQLTGSKMKLLNLYIKRAQ 1440

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148237657|ref|NP_001090708.1| CLIP-associating protein 1 [Xenopus (Silurana) tropicalis] gi|306755658|sp|A1A5G0.1|CLAP1_XENTR RecName: Full=CLIP-associating protein 1; AltName: Full=Cytoplasmic linker-associated protein 1 gi|118763648|gb|AAI28635.1| LOC100036688 protein [Xenopus (Silurana) tropicalis]

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 54/99 (54%), Positives = 72/99 (72%), Gaps = 1/99 (1%)

Query: 52   RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
            ++L P+I   ++PINL AIKM TKVIE+  K  +   LP+I+P LLQ Y+N +S VRK S
Sbjct: 1339 KVLCPIIQTADYPINLAAIKMQTKVIERISKESLHQILPDIIPGLLQGYDNTESSVRKAS 1398

Query: 112  VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQ 150
            VFC+VA+Y   GE  L PY+ +L+G K+KLL LYIKR+Q
Sbjct: 1399 VFCLVAIYSVIGEE-LKPYLAQLTGGKMKLLNLYIKRAQ 1436

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
UNIPROTKB|A1A5G0	1452	clasp1 "CLIP-associating prote	0.625	0.075	0.513	9e-26
UNIPROTKB|A1A5K2	1456	clasp1b "CLIP-associating prot	0.625	0.075	0.513	9.1e-26
UNIPROTKB|Q4U0G1	1460	clasp1-a "CLIP-associating pro	0.625	0.075	0.504	2.4e-25
UNIPROTKB|E1BQ15	1540	CLASP2 "Uncharacterized protei	0.607	0.069	0.513	4.5e-25
UNIPROTKB|E7EW49	1514	CLASP2 "CLIP-associating prote	0.607	0.070	0.504	4.9e-24
UNIPROTKB|Q7Z460	1538	CLASP1 "CLIP-associating prote	0.625	0.071	0.486	2.2e-23
UNIPROTKB|G3N2Y5	1539	G3N2Y5 "Uncharacterized protei	0.625	0.071	0.477	2.2e-23
MGI|MGI:1923957	1535	Clasp1 "CLIP associating prote	0.625	0.071	0.486	3.5e-23
RGD|1310970	152	Clasp1 "cytoplasmic linker ass	0.625	0.723	0.486	6.1e-23
ZFIN|ZDB-GENE-040426-2343	1529	clasp2 "cytoplasmic linker ass	0.625	0.071	0.504	7e-23

UNIPROTKB|A1A5G0 clasp1 "CLIP-associating protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 284 (105.0 bits), Expect = 9.0e-26, Sum P(2) = 9.0e-26
 Identities = 57/111 (51%), Positives = 79/111 (71%)

Query:    52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
             ++L P+I   ++PINL AIKM TKVIE+  K  +   LP+I+P LLQ Y+N +S VRK S
Sbjct:  1339 KVLCPIIQTADYPINLAAIKMQTKVIERISKESLHQILPDIIPGLLQGYDNTESSVRKAS 1398

Query:   112 VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSI 162
             VFC+VA+Y   GE  L PY+ +L+G K+KLL LYIKR+QT +S+  +S  +
Sbjct:  1399 VFCLVAIYSVIGEE-LKPYLAQLTGGKMKLLNLYIKRAQTTNSNSSSSSDV 1448

GO:0007020 "microtubule nucleation" evidence=ISS

GO:0031023 "microtubule organizing center organization" evidence=ISS

GO:0034453 "microtubule anchoring" evidence=ISS

UNIPROTKB|A1A5K2 clasp1b "CLIP-associating protein 1-B" [Xenopus laevis (taxid:8355)]

 Score = 284 (105.0 bits), Expect = 9.1e-26, Sum P(2) = 9.1e-26
 Identities = 57/111 (51%), Positives = 80/111 (72%)

Query:    52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
             ++L P+I   ++PINL AIKM TKVIE+  K  +   LP+I+P LLQ Y+N +S VRK S
Sbjct:  1343 KVLCPIIQTADYPINLAAIKMQTKVIERISKESLHQILPDIIPGLLQGYDNTESSVRKAS 1402

Query:   112 VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSI 162
             VFC+VA+Y   GE  L PY+ +L+G+K+KLL LYIKR+QT +S+  +S  +
Sbjct:  1403 VFCLVAVYSVIGEE-LKPYLAQLTGSKMKLLNLYIKRAQTTNSNSSSSSDV 1452

GO:0007020 "microtubule nucleation" evidence=ISS

GO:0031023 "microtubule organizing center organization" evidence=ISS

GO:0034453 "microtubule anchoring" evidence=ISS

UNIPROTKB|Q4U0G1 clasp1-a "CLIP-associating protein 1-A" [Xenopus laevis (taxid:8355)]

 Score = 280 (103.6 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
 Identities = 56/111 (50%), Positives = 79/111 (71%)

Query:    52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
             ++L P+I   ++PINL AIKM  KVIE+  K  +   LP+I+P LLQ Y+N +S VRK S
Sbjct:  1347 KVLCPIIQTADYPINLAAIKMQAKVIERISKESLHQILPDIIPGLLQGYDNTESSVRKAS 1406

Query:   112 VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSI 162
             VFC+VA+Y   GE  L PY+ +L+G+K+KLL LYIKR+QT +S+  +S  +
Sbjct:  1407 VFCLVAIYSVIGEE-LKPYLAQLTGSKMKLLNLYIKRAQTTNSNSSSSSDV 1456

GO:0007020 "microtubule nucleation" evidence=ISS

GO:0031023 "microtubule organizing center organization" evidence=ISS

GO:0034453 "microtubule anchoring" evidence=ISS

UNIPROTKB|E1BQ15 CLASP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 4.5e-25, Sum P(2) = 4.5e-25
 Identities = 56/109 (51%), Positives = 79/109 (72%)

Query:    52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
             ++L P+I   ++PINL AIKM TKVIE+  K  + L LP IMP L+Q Y+N +S VRK  
Sbjct:  1427 KVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKAC 1486

Query:   112 VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSV-PTS 159
             VFC+VA++   G+  L P++++L+G+K+KLL LYIKR+QT S  V PT+
Sbjct:  1487 VFCLVAVHAVIGDE-LKPHLSQLTGSKMKLLNLYIKRAQTGSGGVDPTT 1534

GO:0016477 "cell migration" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|E7EW49 CLASP2 "CLIP-associating protein 2" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
 Identities = 55/109 (50%), Positives = 78/109 (71%)

Query:    52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
             ++L P+I   ++PINL AIKM TKVIE+  K  + L LP IMP L+Q Y+N +S VRK  
Sbjct:  1401 KVLCPIIQTADYPINLAAIKMQTKVIERVSKETLNLLLPEIMPGLIQGYDNSESSVRKAC 1460

Query:   112 VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSV-PTS 159
             VFC+VA++   G+  L P++++L+G+K+KLL LYIKR+QT S    PT+
Sbjct:  1461 VFCLVAVHAVIGDE-LKPHLSQLTGSKMKLLNLYIKRAQTGSGGADPTT 1508

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

UNIPROTKB|Q7Z460 CLASP1 "CLIP-associating protein 1" [Homo sapiens (taxid:9606)]

 Score = 267 (99.0 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
 Identities = 54/111 (48%), Positives = 79/111 (71%)

Query:    52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
             ++L P+I   ++PINL AIKM TKV+E+  K  +   L +I+P LLQ Y+N +S VRK S
Sbjct:  1425 KVLCPIIQTADYPINLAAIKMQTKVVERIAKESLLQLLVDIIPGLLQGYDNTESSVRKAS 1484

Query:   112 VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSI 162
             VFC+VA+Y   GE  L P++ +L+G+K+KLL LYIKR+QT +S+  +S  +
Sbjct:  1485 VFCLVAIYSVIGED-LKPHLAQLTGSKMKLLNLYIKRAQTTNSNSSSSSDV 1534

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0005828 "kinetochore microtubule" evidence=TAS

GO:0000226 "microtubule cytoskeleton organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IGI;IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0005813 "centrosome" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0030981 "cortical microtubule cytoskeleton" evidence=IDA

GO:0051010 "microtubule plus-end binding" evidence=IDA

GO:0043515 "kinetochore binding" evidence=IMP

GO:0001578 "microtubule bundle formation" evidence=IMP

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=IMP

GO:0005876 "spindle microtubule" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA;IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010458 "exit from mitosis" evidence=IMP

GO:0031592 "centrosomal corona" evidence=IDA

GO:0034453 "microtubule anchoring" evidence=IMP

GO:0007020 "microtubule nucleation" evidence=IMP

GO:0031023 "microtubule organizing center organization" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0051294 "establishment of spindle orientation" evidence=IGI;IMP

GO:0051301 "cell division" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

UNIPROTKB|G3N2Y5 G3N2Y5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 267 (99.0 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
 Identities = 53/111 (47%), Positives = 79/111 (71%)

Query:    52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
             ++L P++   ++PINL AIKM TKV+E+  K  +   L +I+P LLQ Y+N +S VRK S
Sbjct:  1426 KVLCPIVQTADYPINLAAIKMQTKVVERIAKESLLQLLADIIPGLLQGYDNTESSVRKAS 1485

Query:   112 VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSI 162
             VFC+VA+Y   GE  L P++ +L+G+K+KLL LYIKR+QT +S+  +S  +
Sbjct:  1486 VFCLVAIYSVIGEE-LKPHLAQLTGSKMKLLNLYIKRAQTTNSNSSSSSDV 1535

GO:0051301 "cell division" evidence=IEA

GO:0051294 "establishment of spindle orientation" evidence=IEA

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0043515 "kinetochore binding" evidence=IEA

GO:0034453 "microtubule anchoring" evidence=IEA

GO:0031592 "centrosomal corona" evidence=IEA

GO:0031023 "microtubule organizing center organization" evidence=IEA

GO:0030981 "cortical microtubule cytoskeleton" evidence=IEA

GO:0010458 "exit from mitosis" evidence=IEA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IEA

GO:0007020 "microtubule nucleation" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

MGI|MGI:1923957 Clasp1 "CLIP associating protein 1" [Mus musculus (taxid:10090)]

 Score = 265 (98.3 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
 Identities = 54/111 (48%), Positives = 79/111 (71%)

Query:    52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
             ++L P+I   ++PINL AIKM TKV+E+  K  +   L +I+P LLQ Y+N +S VRK S
Sbjct:  1422 KVLCPIIQTADYPINLAAIKMQTKVVERITKESLLQLLVDIIPGLLQGYDNTESSVRKAS 1481

Query:   112 VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSI 162
             VFC+VA+Y   GE  L P++ +L+G+K+KLL LYIKR+QT +S+  +S  +
Sbjct:  1482 VFCLVAIYSVIGED-LKPHLAQLTGSKMKLLNLYIKRAQTTNSNSSSSSDV 1531

GO:0000226 "microtubule cytoskeleton organization" evidence=ISO

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

GO:0001578 "microtubule bundle formation" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005876 "spindle microtubule" evidence=ISO

GO:0005881 "cytoplasmic microtubule" evidence=ISO;IDA

GO:0005938 "cell cortex" evidence=ISO

GO:0007020 "microtubule nucleation" evidence=ISO

GO:0007026 "negative regulation of microtubule depolymerization" evidence=ISO;IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008017 "microtubule binding" evidence=ISO;IDA

GO:0010458 "exit from mitosis" evidence=ISO

GO:0030981 "cortical microtubule cytoskeleton" evidence=ISO

GO:0031023 "microtubule organizing center organization" evidence=ISO

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=ISO

GO:0031592 "centrosomal corona" evidence=ISO

GO:0034453 "microtubule anchoring" evidence=ISO

GO:0043515 "kinetochore binding" evidence=ISO

GO:0051010 "microtubule plus-end binding" evidence=ISO

GO:0051294 "establishment of spindle orientation" evidence=ISO

GO:0051301 "cell division" evidence=ISO

RGD|1310970 Clasp1 "cytoplasmic linker associated protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 54/111 (48%), Positives = 79/111 (71%)

Query:    52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
             ++L P+I   ++PINL AIKM TKV+E+  K  +   L +I+P LLQ Y+N +S VRK S
Sbjct:    39 KVLCPIIQTADYPINLAAIKMQTKVVERITKESLLQLLVDIIPGLLQGYDNTESSVRKAS 98

Query:   112 VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSI 162
             VFC+VA+Y   GE  L P++ +L+G+K+KLL LYIKR+QT +S+  +S  +
Sbjct:    99 VFCLVAIYSVIGED-LKPHLAQLTGSKMKLLNLYIKRAQTTNSNSSSSSDV 148

GO:0000226 "microtubule cytoskeleton organization" evidence=ISO

GO:0000776 "kinetochore" evidence=ISO

GO:0001578 "microtubule bundle formation" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0005881 "cytoplasmic microtubule" evidence=ISO

GO:0005938 "cell cortex" evidence=ISO

GO:0007020 "microtubule nucleation" evidence=ISO

GO:0007026 "negative regulation of microtubule depolymerization" evidence=ISO

GO:0008017 "microtubule binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0010458 "exit from mitosis" evidence=ISO

GO:0030981 "cortical microtubule cytoskeleton" evidence=ISO

GO:0031023 "microtubule organizing center organization" evidence=ISO

GO:0031111 "negative regulation of microtubule polymerization or depolymerization" evidence=ISO

GO:0031592 "centrosomal corona" evidence=ISO

GO:0034453 "microtubule anchoring" evidence=ISO

GO:0043515 "kinetochore binding" evidence=ISO

GO:0051010 "microtubule plus-end binding" evidence=ISO

GO:0051294 "establishment of spindle orientation" evidence=ISO

GO:0051301 "cell division" evidence=ISO

ZFIN|ZDB-GENE-040426-2343 clasp2 "cytoplasmic linker associated protein 2" [Danio rerio (taxid:7955)]

 Score = 274 (101.5 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
 Identities = 56/111 (50%), Positives = 79/111 (71%)

Query:    52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS 111
             ++L P+I + ++PINL AIKMLTKVI++  K  +   LP I+P L+Q Y+N +S VRK  
Sbjct:  1415 KVLCPIIQSADYPINLAAIKMLTKVIDRLPKEGLIQMLPEIVPGLIQGYDNSESSVRKAC 1474

Query:   112 VFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPTSLSI 162
             VFC+VA+Y   GE  L P++++LSG+KLKLL LYIKR+Q+ SS    S  +
Sbjct:  1475 VFCLVAIYAVIGED-LKPHLSQLSGSKLKLLNLYIKRAQSGSSGSDQSSDV 1524

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0031023 "microtubule organizing center organization" evidence=ISS

GO:0034453 "microtubule anchoring" evidence=ISS

GO:0005874 "microtubule" evidence=IEA;ISS

GO:0007020 "microtubule nucleation" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005819 "spindle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O75122	CLAP2_HUMAN	No assigned EC number	0.5045	0.6079	0.0826	yes	N/A
A1A5G0	CLAP1_XENTR	No assigned EC number	0.5454	0.5568	0.0674	yes	N/A
Q99JD4	CLAP2_RAT	No assigned EC number	0.5045	0.6079	0.0832	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
KOG2956|consensus	516		100.0
KOG1242|consensus	569		99.48
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.37
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	98.59
KOG1820|consensus	815		98.34
KOG2956|consensus	516		98.03
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.92
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.81
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.48
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.46
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.38
KOG0915|consensus	1702		97.34
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.32
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.21
KOG1242|consensus	569		97.17
KOG2933|consensus	334		96.96
KOG1824|consensus	1233		96.94
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.89
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	96.75
KOG2171|consensus	1075		96.65
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	96.6
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.6
KOG2171|consensus	1075		96.58
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.58
PTZ00429	746	beta-adaptin; Provisional	96.41
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	96.36
KOG1248|consensus	1176		96.05
PRK09687	280	putative lyase; Provisional	95.83
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	95.75
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	95.73
KOG1967|consensus	1030		95.64
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.58
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.57
KOG0915|consensus	1702		95.3
KOG2023|consensus	885		95.12
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	95.07
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	95.02
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	94.89
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.8
KOG1243|consensus	690		94.59
PRK09687	280	putative lyase; Provisional	94.34
KOG0212|consensus	675		93.82
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	93.81
KOG2023|consensus	885		93.8
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	93.59
KOG0212|consensus	675		93.46
KOG0213|consensus	1172		92.96
KOG0166|consensus	514		92.95
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.89
TIGR02270	410	conserved hypothetical protein. Members are found	92.85
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	92.84
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	92.64
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	92.27
KOG1943|consensus	1133		91.96
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	91.83
KOG1967|consensus	1030		91.81
TIGR02270	410	conserved hypothetical protein. Members are found	90.96
KOG1058|consensus	948		90.86
KOG0392|consensus	1549		90.32
KOG1061|consensus	734		89.9
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	89.6
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	88.98
KOG3961|consensus	262		88.62
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	88.47
KOG2149|consensus	393		88.12
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	88.04
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	87.93
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	87.79
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	87.57
PTZ00429	746	beta-adaptin; Provisional	86.87
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	86.75
PF05004	309	IFRD: Interferon-related developmental regulator (	86.73
KOG2933|consensus	334		86.48
KOG1058|consensus	948		86.24
PF05004	309	IFRD: Interferon-related developmental regulator (	86.16
KOG1248|consensus	1176		85.11
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	84.61
COG1413	335	FOG: HEAT repeat [Energy production and conversion	84.52
KOG2032|consensus	533		84.35
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	84.19
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	83.17
KOG0166|consensus	514		82.91
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	82.55
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	82.36
COG1413	335	FOG: HEAT repeat [Energy production and conversion	81.87
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	81.78
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	81.64
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	81.57
KOG1241|consensus	859		81.48
KOG1824|consensus	1233		81.35
KOG0213|consensus	1172		80.22

>KOG2956|consensus

Probab=100.00  E-value=4e-38  Score=281.77  Aligned_cols=150  Identities=30%  Similarity=0.478  Sum_probs=141.1

Q ss_pred             hCCCchhchHhhHHHHHHHHhcChh-HHHHHHH-----HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCC
Q psy6156           9 NGKGPVELFLPNIMPALLQAYENQD-SCVRKCS-----VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGK   82 (176)
Q Consensus         9 ~~~~~~e~~l~~iL~~LLd~~~d~e-~~VrkAa-----v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~   82 (176)
                      +|++.+.++.+..+.|+||+.+|.. .++|.|+     .+....|.+|+.++.|+|.+.|+|+++++|||+||+|+++++
T Consensus       360 ~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~  439 (516)
T KOG2956|consen  360 NQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSA  439 (516)
T ss_pred             hchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH
Confidence            4667799999999999999999975 6777764     555678999999999999999999999999999999999999


Q ss_pred             chHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcccCCCCCC
Q psy6156          83 GPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSSSVPT  158 (176)
Q Consensus        83 d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~~~~~~~~  158 (176)
                      |++.+.+++++|++++||++++|.|||+|||||||||.++|+++|+|||++|+++|++|+++||+|++++++|+++
T Consensus       440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s~~s~a~~  515 (516)
T KOG2956|consen  440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASSSSSGASS  515 (516)
T ss_pred             HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhcccCCCCC
Confidence            9999999999999999999999999999999999999999988899999999999999999999999999999876

>KOG1242|consensus

Probab=99.48  E-value=1.2e-13  Score=127.59  Aligned_cols=125  Identities=17%  Similarity=0.351  Sum_probs=108.7

Q ss_pred             HhCCCchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHh
Q psy6156           8 QNGKGPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIE   78 (176)
Q Consensus         8 ~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~   78 (176)
                      +.| .++|||+-+++|.+++++.|+...||+|+      +...++++.   .+.-+.+-+.+.+|+++.+++..+.-+. 
T Consensus       205 ~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~-  282 (569)
T KOG1242|consen  205 NLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMA-  282 (569)
T ss_pred             hcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHH-
Confidence            345 66999999999999999999999999986      444577775   4444444445669999999999999777 


Q ss_pred             hcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156          79 QNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL  134 (176)
Q Consensus        79 ~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L  134 (176)
                      ...++++...+|+++|.+.+.++|++++||||+..||+.++.++.|+++.||++.|
T Consensus       283 ~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~L  338 (569)
T KOG1242|consen  283 DCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTL  338 (569)
T ss_pred             HhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999743

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.37  E-value=5.6e-12  Score=102.87  Aligned_cols=140  Identities=21%  Similarity=0.346  Sum_probs=96.3

Q ss_pred             hhHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcC-hHHH-HHhhhhhhhccCcchHHHHHHHH
Q psy6156           2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMVA-LYKV-TRILFPLIIAEEHPINLVAIKML   73 (176)
Q Consensus         2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~-p~~~-l~vL~p~l~~~~~~~~~~aLkmL   73 (176)
                      +..+..+.+++ ++++++.++|.|++..+|....+++++      ++..++ +..+ +..+.+..++..++....++..+
T Consensus        77 l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l  155 (228)
T PF12348_consen   77 LSDLARQLGSH-FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWL  155 (228)
T ss_dssp             HHHHHHHHGGG-GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             HHHHHHHHhHh-HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            45667777766 999999999999999999999999986      444566 3455 88999999999999999999999


Q ss_pred             HHHHhhcC--CchHHh--hhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHH
Q psy6156          74 TKVIEQNG--KGPVEL--FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQ  143 (176)
Q Consensus        74 tklv~~~~--~d~l~~--~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~  143 (176)
                      ..+++..+  .+.+..  .++.+.|.+.++..|++++||++|-.|+..+|..+|+. -.-.+..|+++.||.++
T Consensus       156 ~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~-a~~~~~~l~~~~qk~le  228 (228)
T PF12348_consen  156 AIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER-AESILSMLDPNIQKYLE  228 (228)
T ss_dssp             HHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH-H----------------
T ss_pred             HHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh-hccchhcchhcccccCC
Confidence            99999999  455544  36999999999999999999999999999999999998 66777999999999864

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=98.59  E-value=1.2e-07  Score=77.31  Aligned_cols=100  Identities=24%  Similarity=0.406  Sum_probs=89.7

Q ss_pred             cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHH---HHH
Q psy6156          45 VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVAL---YKE  121 (176)
Q Consensus        45 v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal---~~~  121 (176)
                      ++-+-.+.++...+...+.|-...|.+..+.++++.+.+-+.+.+|++++.+.+|++..+++|.+++.+|+..|   ...
T Consensus        34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~  113 (183)
T PF10274_consen   34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM  113 (183)
T ss_pred             cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence            34444888888888999999999999999999988799999999999999999999999999999999999999   999


Q ss_pred             hcCCccccccccCcHHHHHHHHHHHhhh
Q psy6156         122 FGESVLSPYINKLSGAKLKLLQLYIKRS  149 (176)
Q Consensus       122 lGe~~l~P~L~~L~~~k~kLl~iYi~R~  149 (176)
                      +|++ +.||+.+|    +--+++|.++.
T Consensus       114 vG~a-LvPyyrqL----Lp~ln~f~~k~  136 (183)
T PF10274_consen  114 VGEA-LVPYYRQL----LPVLNLFKNKN  136 (183)
T ss_pred             hhHH-HHHHHHHH----HHHHHHHHhcc
Confidence            9988 99999887    34477887776

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG1820|consensus

Probab=98.34  E-value=2.2e-06  Score=83.18  Aligned_cols=145  Identities=18%  Similarity=0.298  Sum_probs=119.1

Q ss_pred             hHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHH
Q psy6156           3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKV   76 (176)
Q Consensus         3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtkl   76 (176)
                      +.+...++ ..+.+|...++|.++|+++|....+|++.      ++-..+....++.....+..+..+.+..+...+.+.
T Consensus       320 ~~ia~~lr-~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~  398 (815)
T KOG1820|consen  320 ELIAKKLR-PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRK  398 (815)
T ss_pred             HHHHHhcc-hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence            34444455 55899999999999999999988777764      444577788999999999999999999999999999


Q ss_pred             HhhcCCchH-HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhh
Q psy6156          77 IEQNGKGPV-ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKR  148 (176)
Q Consensus        77 v~~~~~d~l-~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R  148 (176)
                      ++..++-.. ...+.++.|+++...+|+..+||+||--|+.+++.++|++.+..+|..+.+--.++..--+.+
T Consensus       399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~~~~~~E~~~p  471 (815)
T KOG1820|consen  399 LRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQDIKPKEEKLKP  471 (815)
T ss_pred             HhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhhhhccc
Confidence            988885333 456789999999999999999999999999999999999999999998887433334444444

>KOG2956|consensus

Probab=98.03  E-value=4.9e-06  Score=76.03  Aligned_cols=81  Identities=30%  Similarity=0.505  Sum_probs=71.6

Q ss_pred             ChhHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhhcChHHHH--HhhhhhhhccCcchHHHHHHHHHHHHh
Q psy6156           1 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVT--RILFPLIIAEEHPINLVAIKMLTKVIE   78 (176)
Q Consensus         1 ~~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~~~l--~vL~p~l~~~~~~~~~~aLkmLtklv~   78 (176)
                      |+|+++|+.+.|.+-+.+..++|.++++|+...+.|||++|||+|+.+..+  +.+.||+.    +.+-+-++++.-.++
T Consensus       429 m~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~----~Lt~sk~~LlqlYin  504 (516)
T KOG2956|consen  429 MLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLE----QLTSSKLNLLQLYIN  504 (516)
T ss_pred             HHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhh----hccHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999999999999998754  58999995    355677889998998


Q ss_pred             hcCCchH
Q psy6156          79 QNGKGPV   85 (176)
Q Consensus        79 ~~~~d~l   85 (176)
                      |...+.-
T Consensus       505 Ra~s~~s  511 (516)
T KOG2956|consen  505 RASSSSS  511 (516)
T ss_pred             HhhcccC
Confidence            8776543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.92  E-value=1.6e-05  Score=46.32  Aligned_cols=30  Identities=27%  Similarity=0.509  Sum_probs=26.8

Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          92 IMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        92 iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      ++|.+.+.++|++++||.+|++|+.+++..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.81  E-value=2.8e-05  Score=50.26  Aligned_cols=53  Identities=19%  Similarity=0.395  Sum_probs=47.2

Q ss_pred             cchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHH
Q psy6156          63 HPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMV  116 (176)
Q Consensus        63 ~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClV  116 (176)
                      |+....|+..|..+. ....+.+..++++++|.|...+.|.+++||.+|.+|+=
T Consensus         1 p~vR~~A~~aLg~l~-~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg   53 (55)
T PF13513_consen    1 PRVRRAAAWALGRLA-EGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG   53 (55)
T ss_dssp             HHHHHHHHHHHHCTT-TTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHh-cccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence            567788999998865 67778889999999999999999999999999999974

...

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.48  E-value=0.00025  Score=52.09  Aligned_cols=71  Identities=25%  Similarity=0.365  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHH
Q psy6156          67 LVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKL  139 (176)
Q Consensus        67 ~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~  139 (176)
                      -|++-.|..+...++.+ +...+++|+|.+..+++|+++.||-+|..++-.+..+.+++ +.||++++=.+--
T Consensus         4 ~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~   74 (97)
T PF12755_consen    4 KGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALC   74 (97)
T ss_pred             hHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            46777788887677777 99999999999999999999999999999999999999888 8888876544333

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.46  E-value=0.00064  Score=49.92  Aligned_cols=74  Identities=27%  Similarity=0.464  Sum_probs=53.4

Q ss_pred             HhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156           8 QNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL   87 (176)
Q Consensus         8 ~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~   87 (176)
                      ..+++ +.+|++.+++.++.++.|++.-||-                             .|+..|-.++ +..++++..
T Consensus        16 ~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy-----------------------------~AcEaL~ni~-k~~~~~~l~   64 (97)
T PF12755_consen   16 ALGKD-ISKYLDEILPPVLKCFDDQDSRVRY-----------------------------YACEALYNIS-KVARGEILP   64 (97)
T ss_pred             HchHh-HHHHHHHHHHHHHHHcCCCcHHHHH-----------------------------HHHHHHHHHH-HHHHHHHHH
Confidence            34434 6677777777777777777777774                             3444444444 334566777


Q ss_pred             hhchHHHHHHHhhcCCChhHHHHHH
Q psy6156          88 FLPNIMPALLQAYENQDSCVRKCSV  112 (176)
Q Consensus        88 ~L~~iiP~l~~a~~~~~s~VRKaaV  112 (176)
                      +.++++++|.+.+.|++..||.+|-
T Consensus        65 ~f~~IF~~L~kl~~D~d~~Vr~~a~   89 (97)
T PF12755_consen   65 YFNEIFDALCKLSADPDENVRSAAE   89 (97)
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHH
Confidence            9999999999999999999999984

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.38  E-value=0.0009  Score=47.73  Aligned_cols=98  Identities=15%  Similarity=0.186  Sum_probs=71.4

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHhh-----cChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156          21 IMPALLQAYENQDSCVRKCSVFCM-----VALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL   87 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav~~~-----v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~   87 (176)
                      +++.+++...|...-+|..++.+.     ..++        .+++.|.+++++.++.....|+..|..+... +++....
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-~~~~~~~   86 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-PEDNKLI   86 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC-cHHHHHH
Confidence            566777777766655666542221     1111        3778888899998899999999999999843 3333332


Q ss_pred             hh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          88 FL-PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        88 ~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      .. ..++|.+.+.+++.+.++|+.+.+++..++
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            33 468999999999999999999999998775

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0915|consensus

Probab=97.34  E-value=0.00096  Score=68.08  Aligned_cols=120  Identities=14%  Similarity=0.209  Sum_probs=97.9

Q ss_pred             HHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH--HHhhcChH----------HHHHhhhhhhhccCcchHHHHHHH
Q psy6156           5 VIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS--VFCMVALY----------KVTRILFPLIIAEEHPINLVAIKM   72 (176)
Q Consensus         5 ~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa--v~~~v~p~----------~~l~vL~p~l~~~~~~~~~~aLkm   72 (176)
                      +.++- ++.++||+..++|+|..=-=|.+..|+.|+  +|..+=++          .+++-|.+.+.+..|+...++.-.
T Consensus       984 i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclA 1062 (1702)
T KOG0915|consen  984 IAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLA 1062 (1702)
T ss_pred             HHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            33444 577999999999999976668899999985  55443333          277777778889999999999999


Q ss_pred             HHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHH---HHHHHHhcCC
Q psy6156          73 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM---VALYKEFGES  125 (176)
Q Consensus        73 Ltklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfCl---Val~~~lGe~  125 (176)
                      |.-++++.+.|++.+.+|++--.+.+.|||-+-+||+||-...   -.+|..+++.
T Consensus      1063 L~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~ 1118 (1702)
T KOG0915|consen 1063 LADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDV 1118 (1702)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            9999999999999999999999999999999999999987654   4455555543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.32  E-value=0.0018  Score=44.66  Aligned_cols=83  Identities=24%  Similarity=0.364  Sum_probs=65.8

Q ss_pred             HHHHHHHh-cChhHHHHHHH--HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHH
Q psy6156          22 MPALLQAY-ENQDSCVRKCS--VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQ   98 (176)
Q Consensus        22 L~~LLd~~-~d~e~~VrkAa--v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~   98 (176)
                      +|.|++.. .|.+..||..+  .+..+.....++.|...+++.+|.....|+..|.++=           -++.+|.+.+
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------~~~~~~~L~~   69 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGDPEAIPALIELLKDEDPMVRRAAARALGRIG-----------DPEAIPALIK   69 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------HHHTHHHHHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHH
Confidence            57788888 78888888876  3445666789999999999999999999999988751           3678999999


Q ss_pred             hhcCCCh-hHHHHHHHHH
Q psy6156          99 AYENQDS-CVRKCSVFCM  115 (176)
Q Consensus        99 a~~~~~s-~VRKaaVfCl  115 (176)
                      .+.+.++ .||.+|+.+|
T Consensus        70 ~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   70 LLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             HHTC-SSHHHHHHHHHHH
T ss_pred             HHcCCCcHHHHHHHHhhc
Confidence            9887654 5699888765

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.21  E-value=0.0033  Score=60.90  Aligned_cols=95  Identities=15%  Similarity=0.255  Sum_probs=71.5

Q ss_pred             HhhHHHHHHHHhcChhHHHHHHH-----HHhhcChHHHHHhhhhhhhcc---CcchHHHHHHHHHHHHhhcCCchHHhhh
Q psy6156          18 LPNIMPALLQAYENQDSCVRKCS-----VFCMVALYKVTRILFPLIIAE---EHPINLVAIKMLTKVIEQNGKGPVELFL   89 (176)
Q Consensus        18 l~~iL~~LLd~~~d~e~~VrkAa-----v~~~v~p~~~l~vL~p~l~~~---~~~~~~~aLkmLtklv~~~~~d~l~~~L   89 (176)
                      +..++|.++....-.+--+.+-.     +.....|+.++-++..+.++-   +.-+.-.||+.|+.+=       +.+.+
T Consensus        53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~-------~~el~  125 (757)
T COG5096          53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR-------VKELL  125 (757)
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC-------hHHHH
Confidence            44444555544442222333322     455689999999999987554   4556678999999875       67789


Q ss_pred             chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          90 PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        90 ~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      +.++|.+.++.+|+++.|||+|++|+..+|
T Consensus       126 ~~~~~~ik~~l~d~~ayVRk~Aalav~kly  155 (757)
T COG5096         126 GNIIDPIKKLLTDPHAYVRKTAALAVAKLY  155 (757)
T ss_pred             HHHHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998

>KOG1242|consensus

Probab=97.17  E-value=0.0023  Score=60.05  Aligned_cols=109  Identities=18%  Similarity=0.334  Sum_probs=76.7

Q ss_pred             hHhhHHHHHHHHhcChhHHHHHHH-------HHhhcChHHHHHhhhhhhhcc----CcchHHHHHHHHHHHHhhc-CCch
Q psy6156          17 FLPNIMPALLQAYENQDSCVRKCS-------VFCMVALYKVTRILFPLIIAE----EHPINLVAIKMLTKVIEQN-GKGP   84 (176)
Q Consensus        17 ~l~~iL~~LLd~~~d~e~~VrkAa-------v~~~v~p~~~l~vL~p~l~~~----~~~~~~~aLkmLtklv~~~-~~d~   84 (176)
                      .+..++|.|+||+.|...-+.++.       ++.-|.+ .-+..+.|+++.+    ...++-.+......++.-. ++..
T Consensus       330 dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~  408 (569)
T KOG1242|consen  330 DIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD  408 (569)
T ss_pred             HHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH
Confidence            466777888888887764444442       1112222 3555666666433    3444444455555555444 5778


Q ss_pred             HHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc
Q psy6156          85 VELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV  126 (176)
Q Consensus        85 l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~  126 (176)
                      +...||+++|++...+.++-++||--+-+.+-+++..+|+..
T Consensus       409 lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~  450 (569)
T KOG1242|consen  409 LAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS  450 (569)
T ss_pred             HhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999973

>KOG2933|consensus

Probab=96.96  E-value=0.002  Score=56.67  Aligned_cols=79  Identities=8%  Similarity=0.198  Sum_probs=69.8

Q ss_pred             ChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          46 ALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        46 ~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      .|+..+.-....+.+++|-.+.-+|+++.++. ..-+|.+.+.|-++|..+++.+.|..|.|.|+|+.|+-++..-+++.
T Consensus        85 ~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs-~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~  163 (334)
T KOG2933|consen   85 DPEAALKQALKKLSSDDWEDKVDGLNSIRRLS-EFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS  163 (334)
T ss_pred             cHHHHHHHHHHHhchHHHHHHhhhHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555556788999999999999999999 66669999999999999999999999999999999999999888776

>KOG1824|consensus

Probab=96.94  E-value=0.0027  Score=62.62  Aligned_cols=125  Identities=13%  Similarity=0.233  Sum_probs=90.6

Q ss_pred             CchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhc-----------------Ch----------HHHHHhhhhhh
Q psy6156          12 GPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMV-----------------AL----------YKVTRILFPLI   58 (176)
Q Consensus        12 ~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v-----------------~p----------~~~l~vL~p~l   58 (176)
                      |-+..+.-.+=|.++..+++.|+-|+.-.      ++..+                 +|          -.+++++.+++
T Consensus       365 E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~ql  444 (1233)
T KOG1824|consen  365 EMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQL  444 (1233)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHH
Confidence            33445555677888888888887777532      11111                 11          12677888888


Q ss_pred             hccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCCh--hHHHHHHHHHHHHHHHhcCCccccccccCcH
Q psy6156          59 IAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDS--CVRKCSVFCMVALYKEFGESVLSPYINKLSG  136 (176)
Q Consensus        59 ~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s--~VRKaaVfClVal~~~lGe~~l~P~L~~L~~  136 (176)
                      .++..++.++++-+|+.++ ...++.+.+++++++||+.-+++|-+|  ..++.+.-|+-..-.--|-+.+.||++.|++
T Consensus       445 r~ks~kt~~~cf~lL~eli-~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~  523 (1233)
T KOG1824|consen  445 REKSVKTRQGCFLLLTELI-NVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSP  523 (1233)
T ss_pred             hhccccchhhHHHHHHHHH-HhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhh
Confidence            8888999999999999999 889999999999999999999997654  4566554444433333444579999998876


Q ss_pred             H
Q psy6156         137 A  137 (176)
Q Consensus       137 ~  137 (176)
                      -
T Consensus       524 ~  524 (1233)
T KOG1824|consen  524 P  524 (1233)
T ss_pred             H
Confidence            3

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.89  E-value=0.001  Score=54.05  Aligned_cols=75  Identities=17%  Similarity=0.242  Sum_probs=55.8

Q ss_pred             hhccCcchHHHHHHHHHHHHhhc----CCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccccc
Q psy6156          58 IIAEEHPINLVAIKMLTKVIEQN----GKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINK  133 (176)
Q Consensus        58 l~~~~~~~~~~aLkmLtklv~~~----~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~  133 (176)
                      -.+.+|.....||..|.++++..    ..+.+...+.++++++.....|..|.|.|.|..|+..+...+|+. +.||+..
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-~~~~~~~   94 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-FEPYADI   94 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-GHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-HHHHHHH
Confidence            36679999999999999999666    234556667788899999999999999999999999999999999 9999753

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=96.75  E-value=0.011  Score=43.13  Aligned_cols=86  Identities=21%  Similarity=0.298  Sum_probs=70.1

Q ss_pred             HhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccc
Q psy6156          52 RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI  131 (176)
Q Consensus        52 ~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L  131 (176)
                      +-....+++...|+...+|.+|++++++.+  ......+.++..+.....|+.|-|==+||.|++++....+++ +-|  
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-vl~--   80 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-VLP--   80 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-HHH--
Confidence            333445677788999999999999998877  334457899999999999999999999999999999999887 433  


Q ss_pred             ccCcHHHHHHHHHHHhhhc
Q psy6156         132 NKLSGAKLKLLQLYIKRSQ  150 (176)
Q Consensus       132 ~~L~~~k~kLl~iYi~R~~  150 (176)
                              .|++.|.+..+
T Consensus        81 --------~L~~~y~~~~~   91 (92)
T PF10363_consen   81 --------ILLDEYADPSE   91 (92)
T ss_pred             --------HHHHHHhCccc
Confidence                    56777776654

>KOG2171|consensus

Probab=96.65  E-value=0.01  Score=59.23  Aligned_cols=130  Identities=19%  Similarity=0.286  Sum_probs=103.3

Q ss_pred             HHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHh------hcChH-------HHHHhhhhhhhccCc-chHHHHH
Q psy6156           5 VIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFC------MVALY-------KVTRILFPLIIAEEH-PINLVAI   70 (176)
Q Consensus         5 ~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~------~v~p~-------~~l~vL~p~l~~~~~-~~~~~aL   70 (176)
                      +.|..+ |-++..|+.+++.++...+|....||-||..+      -++|+       +++..|...+.+.+- ....-|-
T Consensus       375 i~EGc~-~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa  453 (1075)
T KOG2171|consen  375 IAEGCS-DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAA  453 (1075)
T ss_pred             HHcccH-HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHH
Confidence            344444 55888999999999999999999999998433      24454       355667777766554 4444466


Q ss_pred             HHHHHHHhhcCCchHHhhhchHHH-HHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcH
Q psy6156          71 KMLTKVIEQNGKGPVELFLPNIMP-ALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSG  136 (176)
Q Consensus        71 kmLtklv~~~~~d~l~~~L~~iiP-~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~  136 (176)
                      -.+-...+..+++.+.+.||.+|- .+...-.+.++.|+.+||-.+-.+-..-|+. +.||+..+=+
T Consensus       454 ~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~-F~pY~d~~Mp  519 (1075)
T KOG2171|consen  454 AALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK-FIPYFDRLMP  519 (1075)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh-hHhHHHHHHH
Confidence            677778889999999999999999 6778888999999999999999999999999 9999975544

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=96.60  E-value=0.0075  Score=42.87  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=59.4

Q ss_pred             HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhc-hHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLP-NIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~-~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      +++.|...+.+.+|.....++..+..+.. .+++.....+. .++|.+.+.+++.++.||+.++.|+-.++.
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~   78 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSA-GNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA   78 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence            67778888888889999999999999984 34555555565 999999999999999999999999988864

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.60  E-value=0.0085  Score=54.06  Aligned_cols=98  Identities=10%  Similarity=0.211  Sum_probs=68.0

Q ss_pred             HHHHHHHHhcChhHHHHHHH-----HHhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchH
Q psy6156          21 IMPALLQAYENQDSCVRKCS-----VFCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNI   92 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAa-----v~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~i   92 (176)
                      ..+.++.....++-..++-.     .+..-+|+.   +.+.+.--+++.++...-.||+.+..+.       ..+..+.+
T Consensus        43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l  115 (526)
T PF01602_consen   43 LFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPL  115 (526)
T ss_dssp             THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHH
Confidence            34444455554455555533     222345553   3344444456667777778999999987       55667889


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          93 MPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        93 iP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      +|.+.+...|+++.|||+|+.|+..+|..-++.
T Consensus       116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~  148 (526)
T PF01602_consen  116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL  148 (526)
T ss_dssp             HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH
Confidence            999999999999999999999999999985554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2171|consensus

Probab=96.58  E-value=0.0055  Score=61.11  Aligned_cols=93  Identities=19%  Similarity=0.219  Sum_probs=77.3

Q ss_pred             HHhhcChHHHHHhhhhh----hhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHH
Q psy6156          41 VFCMVALYKVTRILFPL----IIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMV  116 (176)
Q Consensus        41 v~~~v~p~~~l~vL~p~----l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClV  116 (176)
                      +++.++|.+++..+.++    +++.+|.-..++|-.+.... ....|.+..+||.|+|.++...+|+.+-||=||.+|+=
T Consensus       336 lA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~-EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naig  414 (1075)
T KOG2171|consen  336 LALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIA-EGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIG  414 (1075)
T ss_pred             HHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            78889999988888776    47889999999999999998 67888899999999999999999999999999988864


Q ss_pred             HHHHHhcCCccccccccCcHHHH
Q psy6156         117 ALYKEFGESVLSPYINKLSGAKL  139 (176)
Q Consensus       117 al~~~lGe~~l~P~L~~L~~~k~  139 (176)
                      -+    .. |+.|++++=...++
T Consensus       415 Q~----st-dl~p~iqk~~~e~l  432 (1075)
T KOG2171|consen  415 QM----ST-DLQPEIQKKHHERL  432 (1075)
T ss_pred             hh----hh-hhcHHHHHHHHHhc
Confidence            33    23 37777765444444

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.58  E-value=0.0053  Score=55.18  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=77.8

Q ss_pred             ChhHHHHHH--HHHhhcChHHHHHhhhhhhh----ccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCC
Q psy6156          31 NQDSCVRKC--SVFCMVALYKVTRILFPLII----AEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD  104 (176)
Q Consensus        31 d~e~~VrkA--av~~~v~p~~~l~vL~p~l~----~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~  104 (176)
                      |.+++..+.  +++..+--++++..+.|.+-    ..+...+..-+..|..++++.+...+..++++++|-+.++.+-++
T Consensus       299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~  378 (415)
T PF12460_consen  299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPD  378 (415)
T ss_pred             CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            334454443  23434445567777776652    323336777899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCccccccccCcH
Q psy6156         105 SCVRKCSVFCMVALYKEFGESVLSPYINKLSG  136 (176)
Q Consensus       105 s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~  136 (176)
                      ++|+.++..|+-.+-.--.+- +.+|++.|=+
T Consensus       379 ~~v~~s~L~tL~~~l~~~~~~-i~~hl~sLI~  409 (415)
T PF12460_consen  379 ADVLLSSLETLKMILEEAPEL-ISEHLSSLIP  409 (415)
T ss_pred             HHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHH
Confidence            999999999998776655333 7777775543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PTZ00429 beta-adaptin; Provisional

Probab=96.41  E-value=0.012  Score=57.17  Aligned_cols=96  Identities=14%  Similarity=0.148  Sum_probs=65.8

Q ss_pred             HHHHHHHhcChhHHHHHHH-----HHhhcChHHHHHhhhhhhh---ccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156          22 MPALLQAYENQDSCVRKCS-----VFCMVALYKVTRILFPLII---AEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM   93 (176)
Q Consensus        22 L~~LLd~~~d~e~~VrkAa-----v~~~v~p~~~l~vL~p~l~---~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii   93 (176)
                      ++.++.+....+-.++|-.     ......|+..+-+...+.+   +.++-..-.|||.|..+-       +...++.++
T Consensus        70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir-------~~~i~e~l~  142 (746)
T PTZ00429         70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR-------VSSVLEYTL  142 (746)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------cHHHHHHHH
Confidence            3333344444444555532     1222356665555666553   334556667899888876       566788899


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156          94 PALLQAYENQDSCVRKCSVFCMVALYKEFGE  124 (176)
Q Consensus        94 P~l~~a~~~~~s~VRKaaVfClVal~~~lGe  124 (176)
                      +.+.++..|.++.|||+|+.|+..+|..-++
T Consensus       143 ~~lkk~L~D~~pYVRKtAalai~Kly~~~pe  173 (746)
T PTZ00429        143 EPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ  173 (746)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence            9999999999999999999999999986553

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=96.36  E-value=0.005  Score=38.53  Aligned_cols=39  Identities=13%  Similarity=0.278  Sum_probs=29.5

Q ss_pred             HHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHH
Q psy6156          72 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVF  113 (176)
Q Consensus        72 mLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVf  113 (176)
                      .+..++ ..++.-+  .-+.+...+.+++.|+++.||+|||.
T Consensus         2 ~l~~iv-~~dp~ll--~~~~v~~~i~~rl~D~s~~VR~aav~   40 (42)
T PF12765_consen    2 ALSSIV-EKDPTLL--DSSDVQSAIIRRLSDSSPSVREAAVD   40 (42)
T ss_pred             hHHHHH-hcCcccc--chHHHHHHHHHHhcCCChHHHHHHHH
Confidence            455555 4444444  33589999999999999999999985

>KOG1248|consensus

Probab=96.05  E-value=0.06  Score=54.22  Aligned_cols=96  Identities=18%  Similarity=0.283  Sum_probs=84.8

Q ss_pred             HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcc
Q psy6156          48 YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVL  127 (176)
Q Consensus        48 ~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l  127 (176)
                      ++.+..++-+|.+....+.-+||+.+..+|..++..-+..++++++|.+..-.++.+-.+||++-.=+-.|+.++|-+++
T Consensus       826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL  905 (1176)
T KOG1248|consen  826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL  905 (1176)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence            45778888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCcHHHHHH-HHHHH
Q psy6156         128 SPYINKLSGAKLKL-LQLYI  146 (176)
Q Consensus       128 ~P~L~~L~~~k~kL-l~iYi  146 (176)
                      +++++   .-.+|+ -+|--
T Consensus       906 e~~~p---ee~~klL~nIRK  922 (1176)
T KOG1248|consen  906 ESFLP---EEDMKLLTNIRK  922 (1176)
T ss_pred             HhhCH---HHHHHHHHHHHH
Confidence            99999   444454 44443

>PRK09687 putative lyase; Provisional

Probab=95.83  E-value=0.035  Score=47.75  Aligned_cols=43  Identities=12%  Similarity=0.254  Sum_probs=30.5

Q ss_pred             chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccc-ccCcH
Q psy6156          90 PNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI-NKLSG  136 (176)
Q Consensus        90 ~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L-~~L~~  136 (176)
                      +..+|.|.++.+|...+||++|+..|-.    +|+++..|+| ..|..
T Consensus       191 ~~~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~  234 (280)
T PRK09687        191 PDIREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKK  234 (280)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcC
Confidence            4678888889999999999999888853    4555455544 34433

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=95.75  E-value=0.21  Score=40.31  Aligned_cols=114  Identities=18%  Similarity=0.233  Sum_probs=83.7

Q ss_pred             hhchHhhHHHHHHHHhc------------------ChhHHHHHHHHHhh----------cChHHHHHhhhhhhhccCcch
Q psy6156          14 VELFLPNIMPALLQAYE------------------NQDSCVRKCSVFCM----------VALYKVTRILFPLIIAEEHPI   65 (176)
Q Consensus        14 ~e~~l~~iL~~LLd~~~------------------d~e~~VrkAav~~~----------v~p~~~l~vL~p~l~~~~~~~   65 (176)
                      +-|++..++|.+++-..                  |.|--+||+|.=|+          ++....+..+...+.+ ++-+
T Consensus         3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI   81 (169)
T PF08623_consen    3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI   81 (169)
T ss_dssp             TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred             hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence            56788999999997764                  44788999973332          3444566667777766 7789


Q ss_pred             HHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhc----C--CC------hhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156          66 NLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYE----N--QD------SCVRKCSVFCMVALYKEFGESVLSP  129 (176)
Q Consensus        66 ~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~----~--~~------s~VRKaaVfClVal~~~lGe~~l~P  129 (176)
                      ++.+.-|++|++ ...++++...|+.+++.+..-+.    +  .+      .|.-|+++.|..++...+.+.+-.|
T Consensus        82 k~L~~~~l~kl~-~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~  156 (169)
T PF08623_consen   82 KMLCHLMLSKLA-QLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSP  156 (169)
T ss_dssp             HHHHHHHHHHHH-HS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH
T ss_pred             HHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCH
Confidence            999999999999 88899999999999999887773    1  12      3566789999999987776654544

; PDB: 4A0C_A 1U6G_C.

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=95.73  E-value=0.026  Score=41.91  Aligned_cols=71  Identities=23%  Similarity=0.350  Sum_probs=64.0

Q ss_pred             CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCc
Q psy6156          62 EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLS  135 (176)
Q Consensus        62 ~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~  135 (176)
                      ....+.-+|+.+..+++ +..+.+...+|+++=+|-.+.+.+  +.|..|+.|--.+...++++++.|++++.-
T Consensus        28 ~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~   98 (107)
T PF08064_consen   28 PIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIF   98 (107)
T ss_pred             CHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            45667789999999996 999999999999999999999887  999999999999999999999999987543

; GO: 0004674 protein serine/threonine kinase activity

>KOG1967|consensus

Probab=95.64  E-value=0.026  Score=55.71  Aligned_cols=119  Identities=22%  Similarity=0.273  Sum_probs=88.0

Q ss_pred             ChhHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH--HHhh----cChH--HHHHhhhhhh----hccC---cch
Q psy6156           1 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS--VFCM----VALY--KVTRILFPLI----IAEE---HPI   65 (176)
Q Consensus         1 ~~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa--v~~~----v~p~--~~l~vL~p~l----~~~~---~~~   65 (176)
                      ++..|+.|.++.-+-|.+..++|-|||+..=.+-.||-.+  .+.+    .++-  .=+..+.|.+    .+-+   .-.
T Consensus       890 ~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~V  969 (1030)
T KOG1967|consen  890 ALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVV  969 (1030)
T ss_pred             HHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHH
Confidence            4678899999999999999999999999985554443222  1111    1110  1233444442    2223   234


Q ss_pred             HHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          66 NLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        66 ~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      ...||++|..+.++.+...+...-|+++-++....||++--|||.||.|==+-|
T Consensus       970 R~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  970 REDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence            568999999999889999999999999999999999999999999999865443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.58  E-value=0.078  Score=52.30  Aligned_cols=98  Identities=17%  Similarity=0.124  Sum_probs=65.8

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCch-H------------
Q psy6156          21 IMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGP-V------------   85 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~-l------------   85 (176)
                      .++.|++..+|.+..||++|+-.  ...+...++.|...+++.++.....|++.|.++.+..+... +            
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR  701 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVR  701 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHH
Confidence            56677788888888888876332  23455677888888888888888888887777654332211 1            


Q ss_pred             ---Hhhhch----HHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156          86 ---ELFLPN----IMPALLQAYENQDSCVRKCSVFCMVAL  118 (176)
Q Consensus        86 ---~~~L~~----iiP~l~~a~~~~~s~VRKaaVfClVal  118 (176)
                         ...|+.    -.+.+.++++|+++.||++|+.+|..+
T Consensus       702 ~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~  741 (897)
T PRK13800        702 AAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV  741 (897)
T ss_pred             HHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence               111111    134577888899999999999888764

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.57  E-value=0.21  Score=42.84  Aligned_cols=116  Identities=13%  Similarity=0.265  Sum_probs=88.4

Q ss_pred             hHHHHHhCCCchhc--hHhhHHHHHH-HHhcChhHHHHHHH-----HHhhcChHH---HHHhhhhhhhccCcchHHHHHH
Q psy6156           3 TKVIEQNGKGPVEL--FLPNIMPALL-QAYENQDSCVRKCS-----VFCMVALYK---VTRILFPLIIAEEHPINLVAIK   71 (176)
Q Consensus         3 t~~~e~~~~~~~e~--~l~~iL~~LL-d~~~d~e~~VrkAa-----v~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLk   71 (176)
                      ..++|+.. ..+.+  .+..++..|+ -+..+.+..||+.+     ++|++....   .+..+...++.++.+.+..|++
T Consensus         8 ~~lL~~~~-~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~   86 (298)
T PF12719_consen    8 QSLLENVS-SSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALK   86 (298)
T ss_pred             HHHHHhcc-ccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            44566666 44555  4557777777 56677778899876     566676653   6667777777778899999999


Q ss_pred             HHHHHHhhcCCchHHhhhc--------hHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          72 MLTKVIEQNGKGPVELFLP--------NIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        72 mLtklv~~~~~d~l~~~L~--------~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      .+.-++-..+.+.+...-.        .+...+.+.+++.++++|-.|+-++-.|.
T Consensus        87 ~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl  142 (298)
T PF12719_consen   87 ALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL  142 (298)
T ss_pred             HHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            9999988888877755554        78888999999999999999999887754

>KOG0915|consensus

Probab=95.30  E-value=0.07  Score=55.09  Aligned_cols=129  Identities=22%  Similarity=0.229  Sum_probs=92.0

Q ss_pred             CCchhchHhhHHHHHHHHhcChhHHHHHHH---HHhhc--Ch-HH-------HHHhhhhhhhccCcchHH---HHHHHHH
Q psy6156          11 KGPVELFLPNIMPALLQAYENQDSCVRKCS---VFCMV--AL-YK-------VTRILFPLIIAEEHPINL---VAIKMLT   74 (176)
Q Consensus        11 ~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa---v~~~v--~p-~~-------~l~vL~p~l~~~~~~~~~---~aLkmLt   74 (176)
                      |.-++.|+..|+--|+..+.+++==||+|+   +...+  .| ++       .+..+.....+=+.-+..   .+.+.++
T Consensus      1030 k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1030 KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999998899985   22221  22 22       222222233333443333   4678888


Q ss_pred             HHHhhcC-Cc---hHHhhhchHHHHHH-HhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHH
Q psy6156          75 KVIEQNG-KG---PVELFLPNIMPALL-QAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLK  140 (176)
Q Consensus        75 klv~~~~-~d---~l~~~L~~iiP~l~-~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~k  140 (176)
                      |++-++. .+   .-.+.++.++|.|. +++-++-.+||+.++..+++|..--|.+ ++||++.|.+.=++
T Consensus      1110 Kl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~-lkP~~~~LIp~ll~ 1179 (1702)
T KOG0915|consen 1110 KLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKE-LKPHFPKLIPLLLN 1179 (1702)
T ss_pred             HHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhh-hcchhhHHHHHHHH
Confidence            8764543 22   22567899999977 7777999999999999999999999999 99999988775443

>KOG2023|consensus

Probab=95.12  E-value=0.046  Score=52.68  Aligned_cols=100  Identities=18%  Similarity=0.230  Sum_probs=77.2

Q ss_pred             hHhhHHHHHHHHhcChhHHHHHHH--HH-hhcCh------HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCC----c
Q psy6156          17 FLPNIMPALLQAYENQDSCVRKCS--VF-CMVAL------YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGK----G   83 (176)
Q Consensus        17 ~l~~iL~~LLd~~~d~e~~VrkAa--v~-~~v~p------~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~----d   83 (176)
                      .++-+=..+|++.+|++.-+|...  +. ..+.-      ...+..|+..+.+.++-+..+|++.|+|++|..+.    |
T Consensus        87 ~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~  166 (885)
T KOG2023|consen   87 VLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSD  166 (885)
T ss_pred             HHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhh
Confidence            444556678889999998888643  11 11211      34888999999999999999999999999966443    3


Q ss_pred             hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHH
Q psy6156          84 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMV  116 (176)
Q Consensus        84 ~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClV  116 (176)
                      -...-|.-+||.+.+-|.|+++.+|+-|++|.-
T Consensus       167 ~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvN  199 (885)
T KOG2023|consen  167 VLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVN  199 (885)
T ss_pred             cccCchHHhHHHHHHHHhCCChhHHHHHHhhhh
Confidence            334567889999999999999999999999964

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=95.07  E-value=0.083  Score=52.12  Aligned_cols=83  Identities=18%  Similarity=0.155  Sum_probs=54.2

Q ss_pred             HHHHHHHhcChhHHHHHHHHHhh---cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHH
Q psy6156          22 MPALLQAYENQDSCVRKCSVFCM---VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQ   98 (176)
Q Consensus        22 L~~LLd~~~d~e~~VrkAav~~~---v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~   98 (176)
                      ++.|+..++|.+..||.+++..+   -.+......|...+++.+|....+|++.|.++-    .       ++-+|.|..
T Consensus       777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----~-------~~a~~~L~~  845 (897)
T PRK13800        777 GDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA----A-------DVAVPALVE  845 (897)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc----c-------cchHHHHHH
Confidence            56777888888888888764322   223345556777778888888888888776532    1       123366666


Q ss_pred             hhcCCChhHHHHHHHHH
Q psy6156          99 AYENQDSCVRKCSVFCM  115 (176)
Q Consensus        99 a~~~~~s~VRKaaVfCl  115 (176)
                      +++|++.+||++|+..|
T Consensus       846 ~L~D~~~~VR~~A~~aL  862 (897)
T PRK13800        846 ALTDPHLDVRKAAVLAL  862 (897)
T ss_pred             HhcCCCHHHHHHHHHHH
Confidence            66677777777776665

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=95.02  E-value=0.29  Score=43.00  Aligned_cols=150  Identities=16%  Similarity=0.167  Sum_probs=110.3

Q ss_pred             HHHH-HhCCCchhchHhhHHHHHHHHhcCh-hHHHHHHH------HHhhcChHH-------HHHhhhhhhhccCcchHHH
Q psy6156           4 KVIE-QNGKGPVELFLPNIMPALLQAYENQ-DSCVRKCS------VFCMVALYK-------VTRILFPLIIAEEHPINLV   68 (176)
Q Consensus         4 ~~~e-~~~~~~~e~~l~~iL~~LLd~~~d~-e~~VrkAa------v~~~v~p~~-------~l~vL~p~l~~~~~~~~~~   68 (176)
                      |+++ ....-+..|+=..+--+|-+|...+ -.-|+..|      +|..+.++.       -..-|.|.+..+.-+++-.
T Consensus        37 k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~  116 (307)
T PF04118_consen   37 KALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQ  116 (307)
T ss_pred             HHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHH
Confidence            4455 3333334555556666677777655 35666654      666666665       3456777788777788888


Q ss_pred             HHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccc--ccCcHHHHHH-HHHH
Q psy6156          69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYI--NKLSGAKLKL-LQLY  145 (176)
Q Consensus        69 aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L--~~L~~~k~kL-l~iY  145 (176)
                      -|++..+.+-.+++ .+...++.++.++.-++++.++|+-+-+...+-.++..+|++-+..-+  .-++....|+ --.|
T Consensus       117 lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~sp~~Rl~al~~  195 (307)
T PF04118_consen  117 LLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIITSPSRRLGALNY  195 (307)
T ss_pred             HHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhcCcchhHHHHHH
Confidence            99999998889999 999999999999999999999999999999999999999999332211  4556666666 5568


Q ss_pred             HhhhcccCC
Q psy6156         146 IKRSQTHSS  154 (176)
Q Consensus       146 i~R~~~~~~  154 (176)
                      +.|.-.+..
T Consensus       196 l~~~l~~~~  204 (307)
T PF04118_consen  196 LLRRLPKFQ  204 (307)
T ss_pred             HHHhCCccc
Confidence            888766544

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=94.89  E-value=0.074  Score=36.36  Aligned_cols=66  Identities=20%  Similarity=0.358  Sum_probs=49.3

Q ss_pred             HHhhhhhh-hccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156          51 TRILFPLI-IAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP  129 (176)
Q Consensus        51 l~vL~p~l-~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P  129 (176)
                      ++.|...+ ++.+|.....+++.|.++-           -++.+|.+.+.++|+++.||.+|++.+-.+    |+++..|
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~~~~~~   65 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRI----GDPEAIP   65 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HHHHTHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHH
Confidence            34566667 6778888889999988332           227799999999999999999999988754    5544444


Q ss_pred             cc
Q psy6156         130 YI  131 (176)
Q Consensus       130 ~L  131 (176)
                      .|
T Consensus        66 ~L   67 (88)
T PF13646_consen   66 AL   67 (88)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.80  E-value=0.067  Score=42.59  Aligned_cols=78  Identities=12%  Similarity=0.155  Sum_probs=57.1

Q ss_pred             HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156          50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP  129 (176)
Q Consensus        50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P  129 (176)
                      .++.+...+++.++.....|+.++++++.. +.   ...=+.++..+..+..|++++||..|.+|+..+....+..-+..
T Consensus        26 ~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~---ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~  101 (178)
T PF12717_consen   26 YLPNLYKCLRDEDPLVRKTALLVLSHLILE-DM---IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYN  101 (178)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Cc---eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence            455666667777777888889999998832 21   12225566788888899999999999999999998855443555


Q ss_pred             cc
Q psy6156         130 YI  131 (176)
Q Consensus       130 ~L  131 (176)
                      ++
T Consensus       102 ~~  103 (178)
T PF12717_consen  102 NF  103 (178)
T ss_pred             HH
Confidence            44

>KOG1243|consensus

Probab=94.59  E-value=0.47  Score=45.76  Aligned_cols=73  Identities=16%  Similarity=0.328  Sum_probs=66.3

Q ss_pred             HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      ++.+|.+.+..-+-++.+.=|.-+.+.+++++++++   -+.+.|++..+|.|+++.+|-..|.||..+.-.+|..
T Consensus       331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~---~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL---NDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh---cchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence            788888888888889999999999999999998877   5689999999999999999999999999998888776

>PRK09687 putative lyase; Provisional

Probab=94.34  E-value=0.29  Score=42.09  Aligned_cols=26  Identities=19%  Similarity=0.268  Sum_probs=14.8

Q ss_pred             chHHHHHHHhhcCCChhHHHHHHHHH
Q psy6156          90 PNIMPALLQAYENQDSCVRKCSVFCM  115 (176)
Q Consensus        90 ~~iiP~l~~a~~~~~s~VRKaaVfCl  115 (176)
                      +..++.+..++.|.++.||.+|+..|
T Consensus       127 ~~a~~~l~~~~~D~~~~VR~~a~~aL  152 (280)
T PRK09687        127 PKIVEQSQITAFDKSTNVRFAVAFAL  152 (280)
T ss_pred             hHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            34455555555555666666666655

>KOG0212|consensus

Probab=93.82  E-value=0.67  Score=44.08  Aligned_cols=117  Identities=15%  Similarity=0.176  Sum_probs=91.9

Q ss_pred             HHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH-----HHh--------hcChHHHHHhhhhhhhccCcchHHHHHHHH
Q psy6156           7 EQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS-----VFC--------MVALYKVTRILFPLIIAEEHPINLVAIKML   73 (176)
Q Consensus         7 e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa-----v~~--------~v~p~~~l~vL~p~l~~~~~~~~~~aLkmL   73 (176)
                      -+..+..+-.||+.+.-.+=...+|.+..||.+|     ++.        .++....++.|...+...+.-+.+..++-+
T Consensus       112 aKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl  191 (675)
T KOG0212|consen  112 AKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWL  191 (675)
T ss_pred             HHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            3455677889999999999999999998888876     111        345566777787777777777777888887


Q ss_pred             HHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156          74 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE  124 (176)
Q Consensus        74 tklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe  124 (176)
                      .-+- ..+.-++-.++|++.|||..-..|++.+||.-+--|+-++-.-+.+
T Consensus       192 ~~Ld-s~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s  241 (675)
T KOG0212|consen  192 YVLD-SVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS  241 (675)
T ss_pred             HHHh-cCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence            7665 6666688899999999999999999999998777777777665544

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=93.81  E-value=0.73  Score=36.60  Aligned_cols=126  Identities=17%  Similarity=0.292  Sum_probs=86.5

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHHHHhh--------cChHH-HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCSVFCM--------VALYK-VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAav~~~--------v~p~~-~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      ..+++.+|.+..+..|.+..||+.|+.+.        +.+.. .+..+.-.+.+.++.+...|...+.++....+++.+.
T Consensus        21 ~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~  100 (178)
T PF12717_consen   21 NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIY  100 (178)
T ss_pred             HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHH
Confidence            56778899999999999999999874443        22222 3244444567888889999999999999888999999


Q ss_pred             hhhchHHHHHHHhhcCC-----ChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcccCC
Q psy6156          87 LFLPNIMPALLQAYENQ-----DSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSS  154 (176)
Q Consensus        87 ~~L~~iiP~l~~a~~~~-----~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~~~~  154 (176)
                      +++++++-.+.....++     +.+-|+....=+            -.|+++ +..+..|++-+.+|-.....
T Consensus       101 ~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fl------------l~~i~~-d~~~~~l~~kl~~~~~~~~~  160 (178)
T PF12717_consen  101 NNFPELISSLNNCYEHPVYGPLSREKRKKIYKFL------------LDFIDK-DKQKESLVEKLCQRFLNAVV  160 (178)
T ss_pred             HHHHHHHHHHhCccccccccccCHHHHHHHHHHH------------HHHcCc-HHHHHHHHHHHHHHHHHHcc
Confidence            99999998888776543     333344222211            223333 45566777777777665543

>KOG2023|consensus

Probab=93.80  E-value=0.31  Score=47.24  Aligned_cols=126  Identities=15%  Similarity=0.261  Sum_probs=93.8

Q ss_pred             hhHHHHHHHHhcCh-----h---HHHHHH----H-HHhh----cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156          19 PNIMPALLQAYENQ-----D---SCVRKC----S-VFCM----VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNG   81 (176)
Q Consensus        19 ~~iL~~LLd~~~d~-----e---~~VrkA----a-v~~~----v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~   81 (176)
                      ..++|.|.+..+..     |   .++.|-    | ++..    =|..-.++-+..++++....+..-|++++..++ -+.
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i-~~~  205 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI-IIQ  205 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee-ecC
Confidence            66778877777643     1   333332    1 2222    233345556666778888888889999999999 788


Q ss_pred             CchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcccC
Q psy6156          82 KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHS  153 (176)
Q Consensus        82 ~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~~~  153 (176)
                      .+.+..+++.++-++...-+|.+++|||.+--.+|-+.-+.-+. +.||+.+       .++--++|.|...
T Consensus       206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk-l~phl~~-------IveyML~~tqd~d  269 (885)
T KOG2023|consen  206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK-LVPHLDN-------IVEYMLQRTQDVD  269 (885)
T ss_pred             cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh-cccchHH-------HHHHHHHHccCcc
Confidence            88999999999999999999999999999999999777776666 9999874       4666667766554

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.59  E-value=0.95  Score=40.82  Aligned_cols=98  Identities=15%  Similarity=0.162  Sum_probs=74.4

Q ss_pred             hHhhHHHHHHHHhcChhHHHHHHH---HHhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhc
Q psy6156          17 FLPNIMPALLQAYENQDSCVRKCS---VFCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLP   90 (176)
Q Consensus        17 ~l~~iL~~LLd~~~d~e~~VrkAa---v~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~   90 (176)
                      .+..+...+..-..|.++.+|-.|   +.....|+-   +++.+...+.+..+-..-.|+-.+.+++ +..++.+...  
T Consensus        76 ~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~-~~~p~~~~~~--  152 (526)
T PF01602_consen   76 LLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIY-RKDPDLVEDE--  152 (526)
T ss_dssp             HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH-HHCHCCHHGG--
T ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHh-ccCHHHHHHH--
Confidence            566677888887888888888766   222334432   5555666678888888888999999999 5577766443  


Q ss_pred             hHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156          91 NIMPALLQAYENQDSCVRKCSVFCMVAL  118 (176)
Q Consensus        91 ~iiP~l~~a~~~~~s~VRKaaVfClVal  118 (176)
                       ++|.+.+.+.|+++.|+-+|+.++-++
T Consensus       153 -~~~~l~~lL~d~~~~V~~~a~~~l~~i  179 (526)
T PF01602_consen  153 -LIPKLKQLLSDKDPSVVSAALSLLSEI  179 (526)
T ss_dssp             -HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred             -HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence             799999999999999999999988888

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0212|consensus

Probab=93.46  E-value=0.36  Score=45.86  Aligned_cols=111  Identities=10%  Similarity=0.248  Sum_probs=90.1

Q ss_pred             CCCchhchHhhHHHHHHHHhcChhHH-HHHHH------HHhh---------cChHHHHHhhhhhhhccCcchHHHHHHHH
Q psy6156          10 GKGPVELFLPNIMPALLQAYENQDSC-VRKCS------VFCM---------VALYKVTRILFPLIIAEEHPINLVAIKML   73 (176)
Q Consensus        10 ~~~~~e~~l~~iL~~LLd~~~d~e~~-VrkAa------v~~~---------v~p~~~l~vL~p~l~~~~~~~~~~aLkmL   73 (176)
                      ++..+-+++..++.+++.|..|.+.. .+.++      +...         ++.-..+++|.-++.++...++.++|+-+
T Consensus       281 ~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi  360 (675)
T KOG0212|consen  281 PGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWI  360 (675)
T ss_pred             CCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            34447799999999999999998764 55543      1111         23335888999999999999999999999


Q ss_pred             HHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          74 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        74 tklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      ..+. +..+.++..+.+++.+.+.....|++.+|---+.+-+-.+|.-
T Consensus       361 ~~l~-~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s  407 (675)
T KOG0212|consen  361 ILLY-HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS  407 (675)
T ss_pred             HHHH-hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence            9998 7788899999999999999999999999988887777766643

>KOG0213|consensus

Probab=92.96  E-value=0.83  Score=45.03  Aligned_cols=138  Identities=17%  Similarity=0.294  Sum_probs=97.2

Q ss_pred             hHHHHHh-CCCchhchHh--hHHHHHHHHhcChh---------HHHHHHH-HHhhcChHH-HHHhhhhhhhccCcchHHH
Q psy6156           3 TKVIEQN-GKGPVELFLP--NIMPALLQAYENQD---------SCVRKCS-VFCMVALYK-VTRILFPLIIAEEHPINLV   68 (176)
Q Consensus         3 t~~~e~~-~~~~~e~~l~--~iL~~LLd~~~d~e---------~~VrkAa-v~~~v~p~~-~l~vL~p~l~~~~~~~~~~   68 (176)
                      -||++++ +.+++++-+.  .++|.++.++....         ..|..++ ++.-+--.. +-+++.++ .+...|-...
T Consensus       657 LKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~l-kde~e~yrkm  735 (1172)
T KOG0213|consen  657 LKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDL-KDEPEQYRKM  735 (1172)
T ss_pred             HHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhh-ccccHHHHHH
Confidence            3566665 6677777443  78999999887543         3333332 332333333 33344333 3444555566


Q ss_pred             HHHHHHHHHhhcCCchHHhhhc-hHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHH
Q psy6156          69 AIKMLTKVIEQNGKGPVELFLP-NIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQ  143 (176)
Q Consensus        69 aLkmLtklv~~~~~d~l~~~L~-~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~  143 (176)
                      +....++++.+++.-.+.+.|- .++-+++-||.++..++. --..|+=.++..+|-. ++||++++-+.=+++++
T Consensus       736 ~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r-~kpylpqi~stiL~rLn  809 (1172)
T KOG0213|consen  736 VAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGR-VKPYLPQICSTILWRLN  809 (1172)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhc-cccchHHHHHHHHHHhc
Confidence            7788899999999998888774 789999999999998887 4456788889999988 99999999888877664

>KOG0166|consensus

Probab=92.95  E-value=0.48  Score=44.40  Aligned_cols=112  Identities=14%  Similarity=0.233  Sum_probs=83.8

Q ss_pred             CCchhchHhhHHHHHHHHhcChh-HHHHHHHHHhh----cChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156          11 KGPVELFLPNIMPALLQAYENQD-SCVRKCSVFCM----VALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVI   77 (176)
Q Consensus        11 ~~~~e~~l~~iL~~LLd~~~d~e-~~VrkAav~~~----v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv   77 (176)
                      +.|-...+..++|.|.....+.+ ++.-+|+-+..    -+++.        +.+.|.+.+.+.+.++...||+++..++
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            34444677889999999998876 44444532211    23332        6677888899999999999999999977


Q ss_pred             hhcCCchHHhhh-chHHHHHHHhhc-CCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          78 EQNGKGPVELFL-PNIMPALLQAYE-NQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        78 ~~~~~d~l~~~L-~~iiP~l~~a~~-~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                       ..+.++....+ ...+|+|...+. +++..+||.|.+.+-.++.  |+.
T Consensus       308 -tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~  354 (514)
T KOG0166|consen  308 -TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQ  354 (514)
T ss_pred             -eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCH
Confidence             66666666665 489999998888 7888899999999988776  665

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.89  E-value=0.46  Score=36.35  Aligned_cols=69  Identities=13%  Similarity=0.227  Sum_probs=47.8

Q ss_pred             HHHHHhhhhhhhccC-cchHHHHHHHHHHHHhhcCCchHHhhhc--hHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156          48 YKVTRILFPLIIAEE-HPINLVAIKMLTKVIEQNGKGPVELFLP--NIMPALLQAYENQDSCVRKCSVFCMVAL  118 (176)
Q Consensus        48 ~~~l~vL~p~l~~~~-~~~~~~aLkmLtklv~~~~~d~l~~~L~--~iiP~l~~a~~~~~s~VRKaaVfClVal  118 (176)
                      +..++.|..++.+++ ..+...|+.=+..+++..+..  ...+.  ..-..+.+-|+|++++||+.|..|+=.+
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g--r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG--RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH--HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            459999999996554 444556888899999665332  22332  2455678899999999999999997655

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>TIGR02270 conserved hypothetical protein

Probab=92.85  E-value=0.77  Score=41.80  Aligned_cols=95  Identities=13%  Similarity=0.048  Sum_probs=55.8

Q ss_pred             HHHHHHHhcChhHHHHHHH--HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHH-----------HhhcCCc---hH
Q psy6156          22 MPALLQAYENQDSCVRKCS--VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKV-----------IEQNGKG---PV   85 (176)
Q Consensus        22 L~~LLd~~~d~e~~VrkAa--v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtkl-----------v~~~~~d---~l   85 (176)
                      +..|+++..|.++-||.++  -+..+....+...|.+.+.+.+....-+++..+..-           ++.-++.   +-
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~~~~~L~~~L~d~d~~Vra~A  167 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHDPGPALEAALTHEDALVRAAA  167 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhccChHHHHHHHhcCCCHHHHHHH
Confidence            6777777777777677654  223456666777777777666654444444443321           1100000   00


Q ss_pred             Hhh-----hchHHHHHHHhhcCCChhHHHHHHHHHH
Q psy6156          86 ELF-----LPNIMPALLQAYENQDSCVRKCSVFCMV  116 (176)
Q Consensus        86 ~~~-----L~~iiP~l~~a~~~~~s~VRKaaVfClV  116 (176)
                      -..     -.+..|.|..+.+|.+++||.+|+..+.
T Consensus       168 ~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~  203 (410)
T TIGR02270       168 LRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGL  203 (410)
T ss_pred             HHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence            011     1345677788888888888888888883

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=92.84  E-value=2  Score=39.74  Aligned_cols=127  Identities=14%  Similarity=0.286  Sum_probs=84.4

Q ss_pred             HHHHhcChh-HHHHHHH-----HHhhcChHHHH----HhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHH
Q psy6156          25 LLQAYENQD-SCVRKCS-----VFCMVALYKVT----RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIM   93 (176)
Q Consensus        25 LLd~~~d~e-~~VrkAa-----v~~~v~p~~~l----~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~ii   93 (176)
                      +++++.+.+ +.+..+.     ++...+|...+    ..|...+.+.+...+..+++.+.+++++ +...+.... .+++
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~-~~~~~~~~~~~~l~  121 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH-SEGAAQLLVDNELL  121 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-CHHHHHHhcCccHH
Confidence            677777552 3333322     44455665544    4455556777888888999999998843 333233233 6899


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHHHH-------HhcCCccccccccCcH-----HHHHHHHHHHhhhcccC
Q psy6156          94 PALLQAYENQDSCVRKCSVFCMVALYK-------EFGESVLSPYINKLSG-----AKLKLLQLYIKRSQTHS  153 (176)
Q Consensus        94 P~l~~a~~~~~s~VRKaaVfClVal~~-------~lGe~~l~P~L~~L~~-----~k~kLl~iYi~R~~~~~  153 (176)
                      |.+..+..|++.+|.|+|...+-.+..       ++++. +.++|..|..     .+.|..+++++-++.+.
T Consensus       122 ~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~-~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~  192 (503)
T PF10508_consen  122 PLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSN-LLSKLKSLMSQSSDIVRCRVYELLVEIASHSP  192 (503)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcc-hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH
Confidence            999999999999999999999998852       22222 3555654332     46888888888876553

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=92.64  E-value=0.32  Score=36.34  Aligned_cols=67  Identities=24%  Similarity=0.294  Sum_probs=58.2

Q ss_pred             chHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccccc
Q psy6156          64 PINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINK  133 (176)
Q Consensus        64 ~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~  133 (176)
                      .-+.-+|+.+..+++ .....+...+|+++=+|-.|.+  .++.|..|..|--.+...+.++++.|.+.+
T Consensus        30 ~ek~~~i~ai~~lI~-~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~   96 (107)
T smart00802       30 NEKKRALRSIGFLIK-LMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQ   96 (107)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            347789999999996 5668899999999999999998  456999999999999999999988887753

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.27  E-value=0.8  Score=39.47  Aligned_cols=93  Identities=20%  Similarity=0.230  Sum_probs=57.2

Q ss_pred             HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH---hhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE---LFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        49 ~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~---~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      ..+..+..+++..++.+...|.++++.++...+...-.   ..++.++..+..-..+.++++...++.|+..+   +..+
T Consensus       105 ~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~L---L~~~  181 (312)
T PF03224_consen  105 DPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNL---LRSK  181 (312)
T ss_dssp             --HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHH---HTSH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH---hCcc
Confidence            35555555778889999999999999999555554444   55666666666655566777888888888876   4556


Q ss_pred             ccccccccCcHHHHHHHHHH
Q psy6156         126 VLSPYINKLSGAKLKLLQLY  145 (176)
Q Consensus       126 ~l~P~L~~L~~~k~kLl~iY  145 (176)
                      ..+..+-+ +++-..|.++.
T Consensus       182 ~~R~~f~~-~~~v~~l~~iL  200 (312)
T PF03224_consen  182 EYRQVFWK-SNGVSPLFDIL  200 (312)
T ss_dssp             HHHHHHHT-HHHHHHHHHHH
T ss_pred             hhHHHHHh-cCcHHHHHHHH
Confidence            57666655 44445556644

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1943|consensus

Probab=91.96  E-value=0.56  Score=47.29  Aligned_cols=132  Identities=20%  Similarity=0.273  Sum_probs=88.2

Q ss_pred             hhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHHHHHhhhhhhh---cc-CcchHHHHHHHHHHHHhhcCCc
Q psy6156          14 VELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYKVTRILFPLII---AE-EHPINLVAIKMLTKVIEQNGKG   83 (176)
Q Consensus        14 ~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~~l~vL~p~l~---~~-~~~~~~~aLkmLtklv~~~~~d   83 (176)
                      +-..+|-++.-|+....|.+..||=.|      +...+|++-.-.++-.++.   -. ++-.-++++=.|.++. +.+- 
T Consensus       335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA-~rGl-  412 (1133)
T KOG1943|consen  335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELA-LRGL-  412 (1133)
T ss_pred             cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHH-hcCC-
Confidence            447888999999999999999998643      5556777653333333332   11 1223346666667665 2221 


Q ss_pred             hHHhhhchHHHHHHHhhc--------CCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhh
Q psy6156          84 PVELFLPNIMPALLQAYE--------NQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRS  149 (176)
Q Consensus        84 ~l~~~L~~iiP~l~~a~~--------~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~  149 (176)
                      .+...++++.|.+.++.+        .....||.||-|-.-|++..-...+|+|++.+|.+.=+  ....-+|.
T Consensus       413 Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL--~~AlFDre  484 (1133)
T KOG1943|consen  413 LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALL--IVALFDRE  484 (1133)
T ss_pred             cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHH--HHHhcCch
Confidence            123345677777776654        45567999999999999998888899999998887643  44444443

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=91.83  E-value=1.9  Score=41.56  Aligned_cols=115  Identities=14%  Similarity=0.258  Sum_probs=85.4

Q ss_pred             HHHHHHHHhcChh--HHHHHHHHHhhc-Ch--HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhc-hHHH
Q psy6156          21 IMPALLQAYENQD--SCVRKCSVFCMV-AL--YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLP-NIMP   94 (176)
Q Consensus        21 iL~~LLd~~~d~e--~~VrkAav~~~v-~p--~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~-~iiP   94 (176)
                      ++..|+|.|-..+  .+++   +++.+ .|  -..+..|..++...  +..+.+|.+|..++ +..+--+..++. .+++
T Consensus        40 l~~~l~~y~~~t~s~~~~~---il~~~~~P~~K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v-~~qp~~l~~i~~t~Lf~  113 (668)
T PF04388_consen   40 LVNGLVDYYLSTNSQRALE---ILVGVQEPHDKHLFDKLNDYFVKP--SYRLQALTLLGHFV-RSQPPWLYKILQTPLFK  113 (668)
T ss_pred             HHHHHHHHHhhcCcHHHHH---HHHhcCCccHHHHHHHHHHHHcCc--hhHHHHHHHHHHHH-hcCCchHHHHhcChhHH
Confidence            4888899988765  3333   55444 56  45899999999754  57789999999999 777777777776 7888


Q ss_pred             HHHHhhc-CCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhh
Q psy6156          95 ALLQAYE-NQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRS  149 (176)
Q Consensus        95 ~l~~a~~-~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~  149 (176)
                      .|.++.. |++..|=-+|+.|++.+-=.+... +.|||+       .|++||.-=.
T Consensus       114 ~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~-l~~~L~-------~Lf~If~Rl~  161 (668)
T PF04388_consen  114 SLLKCLQFDTSITVVSSALLVLIMLLPHIPSS-LGPHLP-------DLFNIFGRLL  161 (668)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHHhccccch-hhHHHH-------HHHHHHHHHH
Confidence            8887765 888888899999999765555554 555555       6788887544

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>KOG1967|consensus

Probab=91.81  E-value=0.9  Score=45.29  Aligned_cols=116  Identities=18%  Similarity=0.337  Sum_probs=79.3

Q ss_pred             hchHhhHHHHHHHHhcCh----hHHHHHH--HHHhhcChHHHH---Hhhhhhh----hccCcchHHHHHHHHHHHHhhcC
Q psy6156          15 ELFLPNIMPALLQAYENQ----DSCVRKC--SVFCMVALYKVT---RILFPLI----IAEEHPINLVAIKMLTKVIEQNG   81 (176)
Q Consensus        15 e~~l~~iL~~LLd~~~d~----e~~VrkA--av~~~v~p~~~l---~vL~p~l----~~~~~~~~~~aLkmLtklv~~~~   81 (176)
                      +-||-.+.|.|.+.|.-+    +....+|  =|...+|-+.++   +-|.|++    +-.+.-..+-++..+.-+. ...
T Consensus       862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l-~~~  940 (1030)
T KOG1967|consen  862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLL-TES  940 (1030)
T ss_pred             HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHH-Hhc
Confidence            457889999999999822    2333332  166677776533   3455543    3334445566666666555 444


Q ss_pred             CchHHhhhchHHHHHHHhhcCCC---hhHHHHHHHHHHHHHHHhcCCcccccc
Q psy6156          82 KGPVELFLPNIMPALLQAYENQD---SCVRKCSVFCMVALYKEFGESVLSPYI  131 (176)
Q Consensus        82 ~d~l~~~L~~iiP~l~~a~~~~~---s~VRKaaVfClVal~~~lGe~~l~P~L  131 (176)
                      ..-+..+++.++|.+..--.+.+   -.||-.|..||.++...+.-..+.||=
T Consensus       941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr  993 (1030)
T KOG1967|consen  941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR  993 (1030)
T ss_pred             cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc
Confidence            55667899999999876555544   689999999999999988888788774

>TIGR02270 conserved hypothetical protein

Probab=90.96  E-value=1.4  Score=40.14  Aligned_cols=57  Identities=12%  Similarity=0.032  Sum_probs=39.9

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHh-hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156          21 IMPALLQAYENQDSCVRKCSVFC-MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVI   77 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav~~-~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv   77 (176)
                      ..+.|+...+|.+.-||.+++.. ...-......|.+.+++.++.....|++.+.++-
T Consensus       118 a~~~L~~~L~~~~p~vR~aal~al~~r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~  175 (410)
T TIGR02270       118 AEPWLEPLLAASEPPGRAIGLAALGAHRHDPGPALEAALTHEDALVRAAALRALGELP  175 (410)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHhhccChHHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence            45666777788888888766421 1111236778888888888888888888887663

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1058|consensus

Probab=90.86  E-value=0.12  Score=50.38  Aligned_cols=44  Identities=27%  Similarity=0.489  Sum_probs=38.2

Q ss_pred             hhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156          87 LFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYIN  132 (176)
Q Consensus        87 ~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~  132 (176)
                      +.|..++|.+.++++|..+.|||.|++|+-.+|.. +|. +-|.-+
T Consensus       130 ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~-L~pDap  173 (948)
T KOG1058|consen  130 ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEH-LIPDAP  173 (948)
T ss_pred             HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhh-hcCChH
Confidence            46789999999999999999999999999999988 555 666554

>KOG0392|consensus

Probab=90.32  E-value=0.93  Score=46.65  Aligned_cols=122  Identities=16%  Similarity=0.107  Sum_probs=87.1

Q ss_pred             hhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChH---HHHHhhhhhhhccC-cchHHHHHHHHHHHHhhcCCc
Q psy6156          14 VELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALY---KVTRILFPLIIAEE-HPINLVAIKMLTKVIEQNGKG   83 (176)
Q Consensus        14 ~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~---~~l~vL~p~l~~~~-~~~~~~aLkmLtklv~~~~~d   83 (176)
                      +++ +-..+|.++.+-.....++|-|+      ++..-.-+   .|++.+.|.+.+.+ .-...+|.-.+..+. ...--
T Consensus       811 l~~-~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~-~~l~~  888 (1549)
T KOG0392|consen  811 LHP-LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLD-AVLMV  888 (1549)
T ss_pred             hhh-hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHH-Hhhcc
Confidence            444 55678888888888888888775      22111111   37777778776553 333344444444444 44555


Q ss_pred             hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHH
Q psy6156          84 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGA  137 (176)
Q Consensus        84 ~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~  137 (176)
                      .+....+=++|.+...|.|...+||-||-.|+..+.-+++.+..-|--..|+.-
T Consensus       889 ~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~e  942 (1549)
T KOG0392|consen  889 GLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKE  942 (1549)
T ss_pred             cccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHH
Confidence            567788899999999999999999999999999999999998777777677653

>KOG1061|consensus

Probab=89.90  E-value=0.88  Score=44.25  Aligned_cols=96  Identities=15%  Similarity=0.275  Sum_probs=68.7

Q ss_pred             HhhHHHHHHHHhcChhHHHHHH-----HHHhhcChHHHHHhhhhhhhcc---CcchHHHHHHHHHHHHhhcCCchHHhhh
Q psy6156          18 LPNIMPALLQAYENQDSCVRKC-----SVFCMVALYKVTRILFPLIIAE---EHPINLVAIKMLTKVIEQNGKGPVELFL   89 (176)
Q Consensus        18 l~~iL~~LLd~~~d~e~~VrkA-----av~~~v~p~~~l~vL~p~l~~~---~~~~~~~aLkmLtklv~~~~~d~l~~~L   89 (176)
                      ..-+.|.++.+.+-.+-.+.|-     .......|+.++.++..++.+.   +|-+...|++++..+-       +....
T Consensus        47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~-------v~~i~  119 (734)
T KOG1061|consen   47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR-------VDKIT  119 (734)
T ss_pred             hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe-------ehHHH
Confidence            4445666666665433222221     1344568888888888888655   5666777888887654       56677


Q ss_pred             chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          90 PNIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        90 ~~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      ..++-.+.++.+|..+.|||+|++|...+|.
T Consensus       120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~  150 (734)
T KOG1061|consen  120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD  150 (734)
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHhhc
Confidence            7888899999999999999999999998874

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=89.60  E-value=0.89  Score=27.31  Aligned_cols=29  Identities=21%  Similarity=0.312  Sum_probs=26.2

Q ss_pred             hHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          91 NIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        91 ~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      ..+|.|++.+++.+.+|++.|+.++-.|+
T Consensus        12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            57999999999999999999999987664

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=88.98  E-value=1.6  Score=47.11  Aligned_cols=137  Identities=12%  Similarity=0.126  Sum_probs=90.2

Q ss_pred             hhHHHHHHHHhcChhHHHHHH-H-----HHhhcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCch
Q psy6156          19 PNIMPALLQAYENQDSCVRKC-S-----VFCMVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGP   84 (176)
Q Consensus        19 ~~iL~~LLd~~~d~e~~VrkA-a-----v~~~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~   84 (176)
                      ...+|.+++...+.+.-+++. +     ++.....++        +++.|...+.+.+......|+..|..+++.-.  .
T Consensus       650 agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e--~  727 (2102)
T PLN03200        650 DEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE--V  727 (2102)
T ss_pred             cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch--H
Confidence            356788888888776555554 3     222223222        67777778888888888889999999884332  2


Q ss_pred             HHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc-----------cccccccCcHHHHHHHHH--------
Q psy6156          85 VELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV-----------LSPYINKLSGAKLKLLQL--------  144 (176)
Q Consensus        85 l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~-----------l~P~L~~L~~~k~kLl~i--------  144 (176)
                      ..+.. .+.+|.|++-+.+-+.++|+.|+..+..+|.....++           +.|...-|++.-.+-..+        
T Consensus       728 ~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~  807 (2102)
T PLN03200        728 AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALA  807 (2102)
T ss_pred             HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            22222 5779999999999999999999999999997766554           234444455444443333        


Q ss_pred             HHhhhcccCCCCC
Q psy6156         145 YIKRSQTHSSSVP  157 (176)
Q Consensus       145 Yi~R~~~~~~~~~  157 (176)
                      |+-|.+.+..-.+
T Consensus       808 ~l~~~~~~~~~~~  820 (2102)
T PLN03200        808 LLARTKGGANFSH  820 (2102)
T ss_pred             HHHhhcccCCCCC
Confidence            6667655544433

>KOG3961|consensus

Probab=88.62  E-value=1.3  Score=37.59  Aligned_cols=90  Identities=21%  Similarity=0.294  Sum_probs=70.7

Q ss_pred             cChHH-----HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          45 VALYK-----VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        45 v~p~~-----~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      ++|++     .+..+...+..-++|....|-.-++.++.+.+ +-+...||.+|+++..|+.+-.-+|-+.+.+.+.-|.
T Consensus       105 ~~pe~Ldy~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv  183 (262)
T KOG3961|consen  105 CDPEKLDYCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLV  183 (262)
T ss_pred             cCHHhccchHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            55654     45556666666789988888888888885555 8888999999999999999999999998888877666


Q ss_pred             HH---hcCCccccccccCcH
Q psy6156         120 KE---FGESVLSPYINKLSG  136 (176)
Q Consensus       120 ~~---lGe~~l~P~L~~L~~  136 (176)
                      ..   +|.. +.||..+|=+
T Consensus       184 ~~~~~vG~a-LVPfYRQlLp  202 (262)
T KOG3961|consen  184 VSVGCVGAA-LVPFYRQLLP  202 (262)
T ss_pred             Hhccccchh-hhhHHHHhhh
Confidence            55   4556 9999876643

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=88.47  E-value=0.6  Score=26.67  Aligned_cols=23  Identities=30%  Similarity=0.603  Sum_probs=17.4

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHh
Q psy6156          21 IMPALLQAYENQDSCVRKCSVFC   43 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav~~   43 (176)
                      ++|.+++...|...-||++|..+
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~   23 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAEC   23 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHH
Confidence            57888888888888888877553

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2149|consensus

Probab=88.12  E-value=2.5  Score=38.42  Aligned_cols=96  Identities=19%  Similarity=0.215  Sum_probs=76.0

Q ss_pred             HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156          50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP  129 (176)
Q Consensus        50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P  129 (176)
                      .++-|.+.+..-.-....-|+.-+..++.. -++++..++-.+++.+.....|.++.||++.+.-+-.+-...+.+++.|
T Consensus        59 tlkeLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp  137 (393)
T KOG2149|consen   59 TLKELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP  137 (393)
T ss_pred             cHHHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence            455555555555555666789999999955 7889999999999999999999999999999988887666677776888


Q ss_pred             ccccCcHHHHHHHHHHHhhhcccCC
Q psy6156         130 YINKLSGAKLKLLQLYIKRSQTHSS  154 (176)
Q Consensus       130 ~L~~L~~~k~kLl~iYi~R~~~~~~  154 (176)
                      |++        ++-.|+.++++..+
T Consensus       138 ~~~--------l~~~yi~~AMThit  154 (393)
T KOG2149|consen  138 MVS--------LLMPYISSAMTHIT  154 (393)
T ss_pred             hHH--------HHHHHHHHHHhhcc
Confidence            875        56678888886543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=88.04  E-value=11  Score=29.59  Aligned_cols=84  Identities=19%  Similarity=0.292  Sum_probs=61.9

Q ss_pred             HHHhhhhhhhccC-cchHHHHHHHHHHHHhhcCC------chHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156          50 VTRILFPLIIAEE-HPINLVAIKMLTKVIEQNGK------GPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF  122 (176)
Q Consensus        50 ~l~vL~p~l~~~~-~~~~~~aLkmLtklv~~~~~------d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l  122 (176)
                      -++.|..+++..+ .+++..++..+++++.....      |...+.+|.+++.+.+-.++  +++...+..++-++-..-
T Consensus        68 W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen   68 WLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH  145 (165)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence            3456666776654 45677899999999876653      34466788888888887776  688888888888877777


Q ss_pred             cCCccccccccCcH
Q psy6156         123 GESVLSPYINKLSG  136 (176)
Q Consensus       123 Ge~~l~P~L~~L~~  136 (176)
                      ..- ++||-+++..
T Consensus       146 ptt-~rp~~~ki~~  158 (165)
T PF08167_consen  146 PTT-FRPFANKIES  158 (165)
T ss_pred             Ccc-ccchHHHHHH
Confidence            777 9999876654

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=87.93  E-value=0.78  Score=29.05  Aligned_cols=32  Identities=25%  Similarity=0.628  Sum_probs=27.7

Q ss_pred             CchhchHhhHHHHHHHHhcChhHHHHHHHHHh
Q psy6156          12 GPVELFLPNIMPALLQAYENQDSCVRKCSVFC   43 (176)
Q Consensus        12 ~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~   43 (176)
                      +.+++++..++|.|+++.+|.++.||.+|...
T Consensus        20 ~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~a   51 (55)
T PF13513_consen   20 ELLQPYLPELLPALIPLLQDDDDSVRAAAAWA   51 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            45788999999999999999988999987653

...

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=87.79  E-value=6.1  Score=36.61  Aligned_cols=100  Identities=17%  Similarity=0.237  Sum_probs=72.0

Q ss_pred             HhhHHHHHHHHhcChhHHHHHHHH-------------HhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCch
Q psy6156          18 LPNIMPALLQAYENQDSCVRKCSV-------------FCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGP   84 (176)
Q Consensus        18 l~~iL~~LLd~~~d~e~~VrkAav-------------~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~   84 (176)
                      +..+.+-|..+..+....||.-++             ...+.-..++..+...+.+.+......|++.|.++.+.  +..
T Consensus        75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~  152 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH--PEG  152 (503)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC--chh
Confidence            566777777777777777776431             11223344777777778888888888999999999953  344


Q ss_pred             HHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          85 VELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        85 l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      +...+ +.+.+.|.+.+...++.||--+.-++|.+.
T Consensus       153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~  188 (503)
T PF10508_consen  153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA  188 (503)
T ss_pred             HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            44443 355889999999989999998888888774

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=87.57  E-value=6  Score=33.85  Aligned_cols=99  Identities=17%  Similarity=0.239  Sum_probs=72.5

Q ss_pred             HHHH-hhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcc
Q psy6156          49 KVTR-ILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVL  127 (176)
Q Consensus        49 ~~l~-vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l  127 (176)
                      .++. .+.|.+++.+..+...|+++|.-.. -++++.-    .+.+|-+.+++.....+||-.|..+++++...-|-+-+
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~-Lld~~~a----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCC-LLDKELA----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HhChHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            4554 4448899998899999999999987 5555433    45566666677666999999999999999999998833


Q ss_pred             ccccc-cCcHHHHHHHHHHHhhhccc
Q psy6156         128 SPYIN-KLSGAKLKLLQLYIKRSQTH  152 (176)
Q Consensus       128 ~P~L~-~L~~~k~kLl~iYi~R~~~~  152 (176)
                      ...-. .=+.....+++++.+--...
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~  126 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSE  126 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcC
Confidence            33322 12345667788887776655

>PTZ00429 beta-adaptin; Provisional

Probab=86.87  E-value=4.1  Score=39.97  Aligned_cols=108  Identities=15%  Similarity=0.140  Sum_probs=67.4

Q ss_pred             CCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhhcC-----hH-----HHHHhhhhhhhccCcchHHHHHHHHHHHHhh
Q psy6156          10 GKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVA-----LY-----KVTRILFPLIIAEEHPINLVAIKMLTKVIEQ   79 (176)
Q Consensus        10 ~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~-----p~-----~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~   79 (176)
                      ++-.....++.+++.+.++..|...-|||+|.++...     |+     ..+..|...+++.+.-....|+.+|.++.+.
T Consensus       130 s~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        130 MCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             HcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence            3344566788899999999999999999988665433     32     1344555555555555555555555555432


Q ss_pred             cC------------------------------------CchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156          80 NG------------------------------------KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVAL  118 (176)
Q Consensus        80 ~~------------------------------------~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal  118 (176)
                      .+                                    +++ ....-+++..+...+.|.++.|-=+|+.|+..+
T Consensus       210 ~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l  283 (746)
T PTZ00429        210 GSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANL  283 (746)
T ss_pred             CchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            11                                    100 111235666777778888887777777777654

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=86.75  E-value=5.6  Score=31.35  Aligned_cols=95  Identities=17%  Similarity=0.199  Sum_probs=70.7

Q ss_pred             hHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcC-CChhHHHHHHHHHHHHHHHhcCC
Q psy6156          47 LYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYEN-QDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        47 p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~-~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      .+.....+...+++++...+-.++.++..+++..+.|-+.++-...+..+..-... ....+.++++.|+..++..++..
T Consensus        23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            34455667778888888888899999999998888888878888888877766664 45678999999999999887763


Q ss_pred             -c-----cccccccCcHHHHHH
Q psy6156         126 -V-----LSPYINKLSGAKLKL  141 (176)
Q Consensus       126 -~-----l~P~L~~L~~~k~kL  141 (176)
                       +     ..|+++.+-++=.+|
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l  124 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQL  124 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHH
Confidence             3     355555443333333

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=86.73  E-value=16  Score=31.87  Aligned_cols=110  Identities=12%  Similarity=0.070  Sum_probs=71.9

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHHH-------HhhcChHHH-------HHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCSV-------FCMVALYKV-------TRILFPLIIAEEHPINLVAIKMLTKVIEQNG   81 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAav-------~~~v~p~~~-------l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~   81 (176)
                      ..++.-|...|+...|+....|++++       ...+.++.+       +..+.-.+..++-.-...|++.+.-++=.++
T Consensus        39 ~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg  118 (309)
T PF05004_consen   39 EDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG  118 (309)
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC
Confidence            45555677777888888788888762       122334433       2222223444443445568888888865665


Q ss_pred             -CchHHhhhchHHHHHHHhhcCCCh--hHHHHHHHHHHHHHHHhcCC
Q psy6156          82 -KGPVELFLPNIMPALLQAYENQDS--CVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        82 -~d~l~~~L~~iiP~l~~a~~~~~s--~VRKaaVfClVal~~~lGe~  125 (176)
                       -+.......++.|.|.+.+.|.+.  .+|-++..||--++++.|++
T Consensus       119 ~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d  165 (309)
T PF05004_consen  119 AGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD  165 (309)
T ss_pred             CCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence             455677889999999999887765  46667777887777777765

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2933|consensus

Probab=86.48  E-value=2.5  Score=37.57  Aligned_cols=109  Identities=17%  Similarity=0.216  Sum_probs=84.8

Q ss_pred             hhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156          14 VELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL   87 (176)
Q Consensus        14 ~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~   87 (176)
                      +.+-++.++.-|+....+.+..||+++      ....+.|...++-|.|+++.....+..-+-.+....+.+++...+..
T Consensus       164 i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~  243 (334)
T KOG2933|consen  164 IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL  243 (334)
T ss_pred             HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence            445777888888888887777787764      44457889999999999988888777778888888888888666644


Q ss_pred             h-hchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156          88 F-LPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF  122 (176)
Q Consensus        88 ~-L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l  122 (176)
                      . ..+..+.+-+-..|.=+++|++|-|-.-..-.++
T Consensus       244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~  279 (334)
T KOG2933|consen  244 QGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVL  279 (334)
T ss_pred             HhHHHHHHHHHhhhcccccccccchhHHHHhHHHHH
Confidence            3 3477888888889999999999988776554443

>KOG1058|consensus

Probab=86.24  E-value=6.6  Score=38.86  Aligned_cols=132  Identities=20%  Similarity=0.343  Sum_probs=81.1

Q ss_pred             hchHhhHHHHHHHHhcChhHHHHHHHHHhhcChHHHHHhhhh--------hhhccCcchHH-------------HHHHHH
Q psy6156          15 ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFP--------LIIAEEHPINL-------------VAIKML   73 (176)
Q Consensus        15 e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p~~~l~vL~p--------~l~~~~~~~~~-------------~aLkmL   73 (176)
                      .+.+++++|.+.+|+.|...-||+=|+++.+..++.+.-|.|        ++.+...|...             -|++.+
T Consensus       129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl  208 (948)
T KOG1058|consen  129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYL  208 (948)
T ss_pred             HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHH
Confidence            357899999999999999999999988888888877666665        23333333221             366666


Q ss_pred             HHHHhhcCC--chHHhhh---------------chHHHHHHHhhcCCChhHH-----------------HHHHHHHHHHH
Q psy6156          74 TKVIEQNGK--GPVELFL---------------PNIMPALLQAYENQDSCVR-----------------KCSVFCMVALY  119 (176)
Q Consensus        74 tklv~~~~~--d~l~~~L---------------~~iiP~l~~a~~~~~s~VR-----------------KaaVfClVal~  119 (176)
                      ...+..++.  +.+....               ...|-++..-...++|+|+                 |+|..|..++-
T Consensus       209 ~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~  288 (948)
T KOG1058|consen  209 LSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLL  288 (948)
T ss_pred             HhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHH
Confidence            666655552  2221111               2344455556666666665                 78888888777


Q ss_pred             HHhcCCccc----cccccCcHHHHHHHHHHH
Q psy6156         120 KEFGESVLS----PYINKLSGAKLKLLQLYI  146 (176)
Q Consensus       120 ~~lGe~~l~----P~L~~L~~~k~kLl~iYi  146 (176)
                      -...+..++    -.|..|++...+.++-|+
T Consensus       289 ~kesdnnvklIvldrl~~l~~~~~~il~~l~  319 (948)
T KOG1058|consen  289 VKESDNNVKLIVLDRLSELKALHEKILQGLI  319 (948)
T ss_pred             HhccCcchhhhhHHHHHHHhhhhHHHHHHHH
Confidence            666554332    122444544455444443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=86.16  E-value=11  Score=32.94  Aligned_cols=113  Identities=14%  Similarity=0.172  Sum_probs=79.1

Q ss_pred             CchhchHhhHHHHHHHHhcChhH--HHHHHH--------HHhhcChHH---HHHhhhhh-----hhcc-C---------c
Q psy6156          12 GPVELFLPNIMPALLQAYENQDS--CVRKCS--------VFCMVALYK---VTRILFPL-----IIAE-E---------H   63 (176)
Q Consensus        12 ~~~e~~l~~iL~~LLd~~~d~e~--~VrkAa--------v~~~v~p~~---~l~vL~p~-----l~~~-~---------~   63 (176)
                      +..+..++.+.|-|.....|...  .+|.++        +++.-.++.   +++.+.-+     .+.+ +         .
T Consensus       121 ~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  121 EDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             ccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence            44678888888888888887642  344332        222233332   23444422     2222 1         2


Q ss_pred             chHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156          64 PINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE  124 (176)
Q Consensus        64 ~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe  124 (176)
                      +...+||..-+=++...+...+...+...+|.|..-.++...+||.||=.++.-+|-...+
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            4566789998888878887778888899999999999999999999999999888766664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1248|consensus

Probab=85.11  E-value=7.5  Score=39.82  Aligned_cols=138  Identities=13%  Similarity=0.187  Sum_probs=90.9

Q ss_pred             HHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhh---c----------Ch-HHHHHhhhhhhhcc---CcchH
Q psy6156           4 KVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM---V----------AL-YKVTRILFPLIIAE---EHPIN   66 (176)
Q Consensus         4 ~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~---v----------~p-~~~l~vL~p~l~~~---~~~~~   66 (176)
                      -+++-++.+ ...++.-.+|-++=.++|-+..-|+-++.|.   .          .| ...++-..+.|..+   +-+..
T Consensus       723 ~L~~~~~~e-~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~  801 (1176)
T KOG1248|consen  723 RLLKLLSAE-HCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRV  801 (1176)
T ss_pred             HHHHhccHH-HHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHH
Confidence            345555544 5566777777777778776655555442221   1          11 22333333333322   33444


Q ss_pred             HHH-HHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHH
Q psy6156          67 LVA-IKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLL  142 (176)
Q Consensus        67 ~~a-LkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl  142 (176)
                      .++ |=+++.++.......=...+..++--+.-.....+.++||+||--+-.++..+.++-+.||++.|=++=.+|.
T Consensus       802 ~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls  878 (1176)
T KOG1248|consen  802 VASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALS  878 (1176)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHH
Confidence            444 7777777655444444556788888888889999999999999999999999999999999988777665553

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=84.61  E-value=11  Score=33.38  Aligned_cols=101  Identities=13%  Similarity=0.287  Sum_probs=66.5

Q ss_pred             HHHHHhcChhHHHHHHHHHhh---cChHHHHHhhhhhhhcc-------CcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156          24 ALLQAYENQDSCVRKCSVFCM---VALYKVTRILFPLIIAE-------EHPINLVAIKMLTKVIEQNGKGPVELFLPNIM   93 (176)
Q Consensus        24 ~LLd~~~d~e~~VrkAav~~~---v~p~~~l~vL~p~l~~~-------~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii   93 (176)
                      ++.++..+..+..|++++-.+   -..+.+++.+..+|..+       ++......++|...++ ..+.=.+...|-.+|
T Consensus       182 ~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl-~N~~l~le~Ylh~Li  260 (343)
T cd08050         182 EITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL-DNPNLHLEPYLHQLI  260 (343)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh-cCCCCchHHhHHHHH
Confidence            444444445566666554431   12233444444444322       4666666778888887 445556777888888


Q ss_pred             HHHHHhh----------cCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          94 PALLQAY----------ENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        94 P~l~~a~----------~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      |.+..+.          .+.....|.-|-.+|..+|..+|+.
T Consensus       261 p~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~  302 (343)
T cd08050         261 PSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS  302 (343)
T ss_pred             HHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence            8887776          3455799999999999999999987

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=84.52  E-value=6.9  Score=33.39  Aligned_cols=102  Identities=22%  Similarity=0.320  Sum_probs=69.1

Q ss_pred             hHHHHHHHHhcChhHHHHHHH--HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCS--VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALL   97 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAa--v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~   97 (176)
                      .....+++.+.|.+..+|..+  ......-...++.|...+.+.+++....|..+|.++-           .+.-+|.++
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-----------~~~a~~~li  111 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAAADALGELG-----------DPEAVPPLV  111 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-----------ChhHHHHHH
Confidence            567788888888877777765  3445566678888888888888876766766444332           245567777


Q ss_pred             Hhhc-CCChhHHHHHHHHHHHHHHHhcCCc-cccccccCcH
Q psy6156          98 QAYE-NQDSCVRKCSVFCMVALYKEFGESV-LSPYINKLSG  136 (176)
Q Consensus        98 ~a~~-~~~s~VRKaaVfClVal~~~lGe~~-l~P~L~~L~~  136 (176)
                      ..+. |.+..||.++.+.+-.+    |+++ +.|.+..|+.
T Consensus       112 ~~l~~d~~~~vR~~aa~aL~~~----~~~~a~~~l~~~l~~  148 (335)
T COG1413         112 ELLENDENEGVRAAAARALGKL----GDERALDPLLEALQD  148 (335)
T ss_pred             HHHHcCCcHhHHHHHHHHHHhc----CchhhhHHHHHHhcc
Confidence            7777 79999999888877543    3332 4444444443

>KOG2032|consensus

Probab=84.35  E-value=19  Score=33.97  Aligned_cols=121  Identities=21%  Similarity=0.170  Sum_probs=87.6

Q ss_pred             HHHHHhCCCchh--chHhhHHHHHHHHhcChhHHHHHHH-----HHhhcChHHHHHhhhh-------hh-hccCcchHHH
Q psy6156           4 KVIEQNGKGPVE--LFLPNIMPALLQAYENQDSCVRKCS-----VFCMVALYKVTRILFP-------LI-IAEEHPINLV   68 (176)
Q Consensus         4 ~~~e~~~~~~~e--~~l~~iL~~LLd~~~d~e~~VrkAa-----v~~~v~p~~~l~vL~p-------~l-~~~~~~~~~~   68 (176)
                      .+.|..++..+.  +.+..++.-+.....|....+|.-+     .....+|++|...-..       .+ ...+.+.-+-
T Consensus       240 f~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~le  319 (533)
T KOG2032|consen  240 FFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLE  319 (533)
T ss_pred             HHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHH
Confidence            455555555455  5677777778888888776666533     1223467765442222       22 2234677778


Q ss_pred             HHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156          69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE  124 (176)
Q Consensus        69 aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe  124 (176)
                      |+++|+.+.+...-+.++..+-++.=-+..-+++..+++|-||.+-+-++-..-|.
T Consensus       320 am~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~  375 (533)
T KOG2032|consen  320 AMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG  375 (533)
T ss_pred             HHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC
Confidence            99999999999999999999999988999999999999999999988877665554

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=84.19  E-value=3.1  Score=33.49  Aligned_cols=78  Identities=17%  Similarity=0.220  Sum_probs=58.9

Q ss_pred             HHHHHHHHhcChhHHHHHHHH--H------hhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchH
Q psy6156          21 IMPALLQAYENQDSCVRKCSV--F------CMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNI   92 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav--~------~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~i   92 (176)
                      .++.+++++-+.+..||.+|+  +      -.++|-.|++.|.....+.+..+...|.++++.+.++.+ +-+   -..+
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~-s~v---~~~~   84 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE-SLV---ESRY   84 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH-HHH---HHHH
Confidence            567788888899999998872  1      148999999999999988888888999999999986642 112   2345


Q ss_pred             HHHHHHhhcC
Q psy6156          93 MPALLQAYEN  102 (176)
Q Consensus        93 iP~l~~a~~~  102 (176)
                      .-|+..||+-
T Consensus        85 ~~gi~~af~~   94 (187)
T PF12830_consen   85 SEGIRLAFDY   94 (187)
T ss_pred             HHHHHHHHHH
Confidence            5566666653

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=83.17  E-value=3.3  Score=30.61  Aligned_cols=65  Identities=15%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             hHHHHHhhhhhhhccC----cchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHH
Q psy6156          47 LYKVTRILFPLIIAEE----HPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM  115 (176)
Q Consensus        47 p~~~l~vL~p~l~~~~----~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfCl  115 (176)
                      ...++..+...++...    ......+|+++...++-.+.+.+.+  ..+++.+.+.+++++  .|.+|+.|+
T Consensus        80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~~~--~~~~A~~cl  148 (148)
T PF08389_consen   80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQSPE--LREAAAECL  148 (148)
T ss_dssp             HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence            4557777777775543    4556689999999998766666654  669999999995544  499999996

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>KOG0166|consensus

Probab=82.91  E-value=3.5  Score=38.81  Aligned_cols=105  Identities=13%  Similarity=0.267  Sum_probs=75.4

Q ss_pred             hhchHh-hHHHHHHHHhcChhHHHHHHHHHhh-------------cChHHHHHhhhhhhh-ccCcchHHHHHHHHHHHHh
Q psy6156          14 VELFLP-NIMPALLQAYENQDSCVRKCSVFCM-------------VALYKVTRILFPLII-AEEHPINLVAIKMLTKVIE   78 (176)
Q Consensus        14 ~e~~l~-~iL~~LLd~~~d~e~~VrkAav~~~-------------v~p~~~l~vL~p~l~-~~~~~~~~~aLkmLtklv~   78 (176)
                      ++-.++ -+.|.|++..++.+..|+-.++=..             +=-...+++|..++. +.+..++..|.-.+..+. 
T Consensus       272 iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt-  350 (514)
T KOG0166|consen  272 IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT-  350 (514)
T ss_pred             HHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh-
Confidence            444444 4788888988887654443321110             111126677777776 445557788889999988 


Q ss_pred             hcCCchHHhhhc-hHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          79 QNGKGPVELFLP-NIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        79 ~~~~d~l~~~L~-~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      ...++++...++ .++|.|+..+...+=..||.|.+.+-.++
T Consensus       351 AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t  392 (514)
T KOG0166|consen  351 AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT  392 (514)
T ss_pred             cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence            688889988885 99999999999999999999999876543

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=82.55  E-value=13  Score=33.08  Aligned_cols=83  Identities=14%  Similarity=0.176  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc-c----ccccccCcHHHHHHH
Q psy6156          68 VAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV-L----SPYINKLSGAKLKLL  142 (176)
Q Consensus        68 ~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~-l----~P~L~~L~~~k~kLl  142 (176)
                      .+|..+.+++ ...++.+..+.+.-+|.+...+-|....+|-.|.-++..+...+|.+. +    ..-++.-...+ +++
T Consensus       153 erL~i~~~ll-~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~  230 (372)
T PF12231_consen  153 ERLNIYKRLL-SQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG-KLI  230 (372)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc-cHH
Confidence            5788899999 667788888999999999999999999999999999999999998641 1    12223223333 889


Q ss_pred             HHHHhhhccc
Q psy6156         143 QLYIKRSQTH  152 (176)
Q Consensus       143 ~iYi~R~~~~  152 (176)
                      +.|.+|.+.=
T Consensus       231 ~~~~~~L~~m  240 (372)
T PF12231_consen  231 QLYCERLKEM  240 (372)
T ss_pred             HHHHHHHHHH
Confidence            9998887543

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=82.36  E-value=4.8  Score=34.96  Aligned_cols=85  Identities=14%  Similarity=0.129  Sum_probs=64.0

Q ss_pred             HHHHHhhhhhhhc-cCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc
Q psy6156          48 YKVTRILFPLIIA-EEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV  126 (176)
Q Consensus        48 ~~~l~vL~p~l~~-~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~  126 (176)
                      ..+...|.|++.. ..+.+....++++.......+.    +.-++++..+.++|.|.++.|||+-..|+-+.....++.+
T Consensus        21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~----~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~   96 (339)
T PF12074_consen   21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS----ELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD   96 (339)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc----CCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence            4588889999865 4677888889999888766511    1235788889999999999999999999998887555555


Q ss_pred             cccccccCcH
Q psy6156         127 LSPYINKLSG  136 (176)
Q Consensus       127 l~P~L~~L~~  136 (176)
                      ..+++..+-+
T Consensus        97 ~~~~~~~~~~  106 (339)
T PF12074_consen   97 SLKFAEPFLP  106 (339)
T ss_pred             HHHHHHHHHH
Confidence            5555555444

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=81.87  E-value=13  Score=31.66  Aligned_cols=61  Identities=18%  Similarity=0.213  Sum_probs=44.6

Q ss_pred             hhHHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhh-ccCcchHHHHHHHHHHHHhh
Q psy6156          19 PNIMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLII-AEEHPINLVAIKMLTKVIEQ   79 (176)
Q Consensus        19 ~~iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~-~~~~~~~~~aLkmLtklv~~   79 (176)
                      +..+|.+.+...|.+..||..++..  .+........|...++ +.++.+...+...|.++-..
T Consensus        73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~  136 (335)
T COG1413          73 EEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDE  136 (335)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch
Confidence            4578888888888888888877543  3455667788888887 47777887777777776433

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=81.78  E-value=9.5  Score=32.60  Aligned_cols=126  Identities=17%  Similarity=0.272  Sum_probs=77.0

Q ss_pred             HhCCCchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHH------------HHHhhhhhhh--------cc
Q psy6156           8 QNGKGPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYK------------VTRILFPLII--------AE   61 (176)
Q Consensus         8 ~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~------------~l~vL~p~l~--------~~   61 (176)
                      +.+...++.++..++|.+|-..+|.+..++.-.      ++..+++..            ..+.|.|.+.        +.
T Consensus       107 ~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~  186 (282)
T PF10521_consen  107 QLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE  186 (282)
T ss_pred             cCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh
Confidence            667777899999999999999999754444332      222233222            2234555443        33


Q ss_pred             CcchHHHHHHHHHHHHhhc---CCchHHhhhchHH-HHHHHhhcCC----ChhHHHHHHHHHHHHHHHhcCCcccccccc
Q psy6156          62 EHPINLVAIKMLTKVIEQN---GKGPVELFLPNIM-PALLQAYENQ----DSCVRKCSVFCMVALYKEFGESVLSPYINK  133 (176)
Q Consensus        62 ~~~~~~~aLkmLtklv~~~---~~d~l~~~L~~ii-P~l~~a~~~~----~s~VRKaaVfClVal~~~lGe~~l~P~L~~  133 (176)
                      ..+....|...+.+++...   +...=...+.+++ -++...|.+.    ...+|.+-...+-.+...+|-. ...||+.
T Consensus       187 s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~r  265 (282)
T PF10521_consen  187 SLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQR  265 (282)
T ss_pred             hHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence            3455556777777765431   1222222333333 3355555544    3688888888899999999988 7778765


Q ss_pred             C
Q psy6156         134 L  134 (176)
Q Consensus       134 L  134 (176)
                      +
T Consensus       266 i  266 (282)
T PF10521_consen  266 I  266 (282)
T ss_pred             H
Confidence            4

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=81.64  E-value=11  Score=29.71  Aligned_cols=71  Identities=13%  Similarity=0.220  Sum_probs=51.1

Q ss_pred             HHHhhhhhhhccCcchHH-HHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          50 VTRILFPLIIAEEHPINL-VAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        50 ~l~vL~p~l~~~~~~~~~-~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      +++.|.-++++.-..... .++..+..+++..+..- -..|+.++|.+...+.+..+..|.....-|..+...
T Consensus        87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i  158 (160)
T PF11865_consen   87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI  158 (160)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            566666666655333332 47777788887777776 789999999999999998888888655555555443

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=81.57  E-value=2.7  Score=36.00  Aligned_cols=65  Identities=14%  Similarity=0.144  Sum_probs=52.9

Q ss_pred             CcchHHH-HHHHHHHHHh-hcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc
Q psy6156          62 EHPINLV-AIKMLTKVIE-QNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV  126 (176)
Q Consensus        62 ~~~~~~~-aLkmLtklv~-~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~  126 (176)
                      .|+.+-+ +.-.+.-++. +.+...+..+++-++|++....||.++++|--++.|+-.+...++..+
T Consensus        88 ~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~  154 (282)
T PF10521_consen   88 PWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE  154 (282)
T ss_pred             CcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence            5665543 2134444454 889999999999999999999999999999999999999998777665

>KOG1241|consensus

Probab=81.48  E-value=4.8  Score=39.63  Aligned_cols=128  Identities=16%  Similarity=0.270  Sum_probs=93.3

Q ss_pred             hhHHHHHhCCCchhchHhhHHHHHHHHhcChh-HHHHHHH---HHh---hcCh--HHHHHhhhhhh-----hccCcchHH
Q psy6156           2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQD-SCVRKCS---VFC---MVAL--YKVTRILFPLI-----IAEEHPINL   67 (176)
Q Consensus         2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e-~~VrkAa---v~~---~v~p--~~~l~vL~p~l-----~~~~~~~~~   67 (176)
                      +.-++.+.+++ +.+.-+.++..+++-+.-++ ..|++-+   +.+   .+.+  .+-.+.+.|++     +..++|...
T Consensus       579 Lq~i~rk~~~~-~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~  657 (859)
T KOG1241|consen  579 LQSIIRKVGSD-IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCA  657 (859)
T ss_pred             HHHHHHHcccc-chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            45567777875 77888888888888887643 3334322   222   2222  13445566654     556899999


Q ss_pred             HHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156          68 VAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD--SCVRKCSVFCMVALYKEFGESVLSPYIN  132 (176)
Q Consensus        68 ~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~--s~VRKaaVfClVal~~~lGe~~l~P~L~  132 (176)
                      +|+-+.+.+.+.+ .+.+.+.-+++|-.|++...++.  -+|.=+..-|.=++-..+|++ +.||+.
T Consensus       658 ~aVglVgdl~raL-~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~-F~~Yl~  722 (859)
T KOG1241|consen  658 AAVGLVGDLARAL-EDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGAD-FEPYLE  722 (859)
T ss_pred             HHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHh-HHHHHH
Confidence            9999999999444 45567888999999999988654  467778888999999999999 999985

>KOG1824|consensus

Probab=81.35  E-value=6.8  Score=39.70  Aligned_cols=119  Identities=15%  Similarity=0.210  Sum_probs=84.5

Q ss_pred             hHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH-----HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156           3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS-----VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVI   77 (176)
Q Consensus         3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa-----v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv   77 (176)
                      -+++-+.+-+.+-++.+.|.--|.......|+-.|.-.     ..+.+.|+..+.-|.-.+.++..-+...++-...-.+
T Consensus       915 kevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsi  994 (1233)
T KOG1824|consen  915 KEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSI  994 (1233)
T ss_pred             HHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeee
Confidence            45666667777778888888888777777765555421     4557899999999988887765544444444333344


Q ss_pred             hhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          78 EQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        78 ~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                       .-.+..+...+...|--+..++.|+..+||..|+   |++-...-|.
T Consensus       995 -sd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaL---vv~nSaahNK 1038 (1233)
T KOG1824|consen  995 -SDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVAL---VVLNSAAHNK 1038 (1233)
T ss_pred             -cCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHH---HHHHHHHccC
Confidence             5567778888999999999999999999999775   4444444443

>KOG0213|consensus

Probab=80.22  E-value=8.1  Score=38.45  Aligned_cols=94  Identities=16%  Similarity=0.203  Sum_probs=70.6

Q ss_pred             ChhHHHHHHH------HHhhcChHHHHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCC
Q psy6156          31 NQDSCVRKCS------VFCMVALYKVTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQ  103 (176)
Q Consensus        31 d~e~~VrkAa------v~~~v~p~~~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~  103 (176)
                      +.++-||.-.      ++..+-...+++.|...-.+. .|+.....||+.+++..-++- .+.++|..++.++..+..|.
T Consensus       487 n~deYVRnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gc-svlphl~~lv~ii~~gl~De  565 (1172)
T KOG0213|consen  487 NKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGC-SVLPHLKPLVKIIEHGLKDE  565 (1172)
T ss_pred             cccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcc-hhhhhhHHHHHHHHHhhccc
Confidence            3467787742      444444455555555555555 699999999999999844444 46789999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHhcCC
Q psy6156         104 DSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus       104 ~s~VRKaaVfClVal~~~lGe~  125 (176)
                      +--||--+-.||-++.-..|.-
T Consensus       566 ~qkVR~itAlalsalaeaa~Py  587 (1172)
T KOG0213|consen  566 QQKVRTITALALSALAEAATPY  587 (1172)
T ss_pred             chhhhhHHHHHHHHHHHhcCCc
Confidence            9999998888888877665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	6e-15
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	2e-08
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-05
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	3e-06
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	7e-05

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 69.3 bits (169), Expect = 6e-15
 Identities = 19/141 (13%), Positives = 54/141 (38%), Gaps = 7/141 (4%)

Query: 17  FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVT---RILFPLIIAEEHPINLV---AI 70
           +    +P+LL+ ++ +   V       + A+Y  T        ++ +  +    V     
Sbjct: 95  YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETA 154

Query: 71  KMLTKVIEQNG-KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSP 129
             + + + +       +  L  +  +L++     D  VR  S   +  L K  G+  ++P
Sbjct: 155 LFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTP 214

Query: 130 YINKLSGAKLKLLQLYIKRSQ 150
            +  +   K+  ++   ++++
Sbjct: 215 LLADVDPLKMAKIKECQEKAE 235

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 16/147 (10%)

Query: 17  FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEE----------HPIN 66
           ++  +   LL   + +   V +     ++ + K    L      E+          H   
Sbjct: 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTP 160

Query: 67  LV---AIKMLTKVIEQNGKGPVEL---FLPNIMPALLQAYENQDSCVRKCSVFCMVALYK 120
            +     ++    +++   G   L       ++P ++Q   +    +R         L K
Sbjct: 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220

Query: 121 EFGESVLSPYINKLSGAKLKLLQLYIK 147
            FG +     +  L   K K ++  +K
Sbjct: 221 IFGMNTFVKTLEHLDNLKRKKIEETVK 247

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 14  VELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK----------VTRILFPLIIAEEH 63
           +     +++PA+++  E+    VR   +  M  L            +  +    ++   +
Sbjct: 396 IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 455

Query: 64  PINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFG 123
            I   A   L K++E+ GK   E     I+P +L    + +   R  ++FC+  L +  G
Sbjct: 456 AIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512

Query: 124 ESVLSPYI 131
           + + + ++
Sbjct: 513 QDITTKHM 520

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 17/132 (12%), Positives = 45/132 (34%), Gaps = 13/132 (9%)

Query: 13  PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTR------ILFPLIIA-EEHPI 65
            VE F   +    +    +    +R+ +   +  L +          + P ++A    P 
Sbjct: 434 GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN 493

Query: 66  NLV---AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122
            L     +  +  + E  G+   ++   +++P +L+   +  + VR      +  +    
Sbjct: 494 YLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL 550

Query: 123 GESVLSPYINKL 134
             S L   +  +
Sbjct: 551 DNSTLQSEVKPI 562

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 22/135 (16%), Positives = 51/135 (37%), Gaps = 9/135 (6%)

Query: 21  IMPALLQAYENQDSCVRKCSVFCMVALYKVT---RILFPLIIAEEHPINLV---AIKMLT 74
            +P LL         +R      +  L  V    ++   L+ A +          + ++ 
Sbjct: 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIE 192

Query: 75  KVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL 134
             I   G  P++    ++   +     ++D  VR  ++  +VA +K  G+ +      ++
Sbjct: 193 YYITNAGISPLKS--LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW-KAAGRM 249

Query: 135 SGAKLKLLQLYIKRS 149
           +     L++  IKR+
Sbjct: 250 ADKDKSLVEERIKRT 264

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 69  AIKMLTKVIEQNG--KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES- 125
           A   + +++   G     V+ FLP ++  + Q   + D  VR  ++  +V +YK  G + 
Sbjct: 159 AANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218

Query: 126 --VLSPYINKLSGAKLKLLQ 143
             +      KL   ++K L 
Sbjct: 219 DLLEEILFKKLKPIQVKDLH 238

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.87
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.79
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.73
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.54
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.25
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.63
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.37
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.25
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.22
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.21
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.19
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.16
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.14
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.09
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.02
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.99
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.78
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.74
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.7
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.46
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.34
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	97.29
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	97.27
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.18
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	97.17
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	97.1
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	97.05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	96.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	96.95
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	96.9
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	96.85
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	96.84
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	96.83
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	96.71
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	96.7
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	96.66
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.65
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	96.53
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	96.52
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.43
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	96.11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	96.1
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	95.84
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	95.78
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.58
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.11
2x1g_F	971	Cadmus; transport protein, developmental protein,	94.84
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	94.83
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	94.81
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	94.72
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	94.61
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	94.58
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	94.21
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	94.15
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	93.82
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	93.77
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	93.63
2x1g_F	971	Cadmus; transport protein, developmental protein,	93.22
2x19_B	963	Importin-13; nuclear transport, protein transport;	93.18
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	92.98
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	92.8
2x19_B	963	Importin-13; nuclear transport, protein transport;	92.23
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	92.12
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	91.82
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	91.65
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	91.43
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	90.45
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	90.1
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	90.05
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	89.35
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	89.26
4flb_A	132	Regulation of nuclear PRE-mRNA domain-containing;	89.07
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	88.69
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.27
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	87.01
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	86.86
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	86.71
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	84.49
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	84.12
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	84.02
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	83.81
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	83.57
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	83.23
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	83.18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	83.1
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	82.3
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	81.93
1sz9_A	144	PCF11 protein; RNA polymerase II CTD interacting d	80.8

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.4e-21  Score=161.93  Aligned_cols=148  Identities=11%  Similarity=0.211  Sum_probs=132.3

Q ss_pred             hhHHHHHhCCCchh-chHhhHHHHHHHHhcChhHHHHHHH------HHhhc------C-hHHHHHhhhhhhhccCcchHH
Q psy6156           2 LTKVIEQNGKGPVE-LFLPNIMPALLQAYENQDSCVRKCS------VFCMV------A-LYKVTRILFPLIIAEEHPINL   67 (176)
Q Consensus         2 ~t~~~e~~~~~~~e-~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v------~-p~~~l~vL~p~l~~~~~~~~~   67 (176)
                      +..+.++.+++.++ +|...++|.+++.++|+...|++++      ++..+      + ++.+++.|.+.+++++|+.+.
T Consensus        85 l~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~  164 (249)
T 2qk1_A           85 VELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRM  164 (249)
T ss_dssp             HHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHH
Confidence            34566777734598 9999999999999999988888874      45455      4 678999999999999999999


Q ss_pred             HHHHHHHHHHhhcCC--chHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHH
Q psy6156          68 VAIKMLTKVIEQNGK--GPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQL  144 (176)
Q Consensus        68 ~aLkmLtklv~~~~~--d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~i  144 (176)
                      ++++.+.++++..+.  +.+..++ +.++|.+.+.++|++++||++|++|+.++|..+|++++.||++.|+++|++.++-
T Consensus       165 ~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ki~~  244 (249)
T 2qk1_A          165 ECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEE  244 (249)
T ss_dssp             HHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHHHHHH
Confidence            999999999987775  7788999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh
Q psy6156         145 YIKRS  149 (176)
Q Consensus       145 Yi~R~  149 (176)
                      |++++
T Consensus       245 ~~~~~  249 (249)
T 2qk1_A          245 TVKTL  249 (249)
T ss_dssp             HHHC-
T ss_pred             HHhcC
Confidence            99874

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.79  E-value=2.1e-18  Score=139.49  Aligned_cols=151  Identities=11%  Similarity=0.225  Sum_probs=135.6

Q ss_pred             hHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHH
Q psy6156           3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKV   76 (176)
Q Consensus         3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtkl   76 (176)
                      ..+....++ .+++|.+.++|.|+++++|+...||+++      ++...++..+++.|...+++.+|+.+..++..+..+
T Consensus        82 ~~la~~l~~-~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~  160 (242)
T 2qk2_A           82 ALLAKGLAK-RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARA  160 (242)
T ss_dssp             HHHHHHHGG-GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh-hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            455566664 4899999999999999999999999986      444567778999999999999999999999999999


Q ss_pred             HhhcCCc-hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhcccCC
Q psy6156          77 IEQNGKG-PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQTHSS  154 (176)
Q Consensus        77 v~~~~~d-~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~~~~~  154 (176)
                      +...+++ ....+++.++|.+...++|++++||++|..|+..++..+|++.+.||++.|++++++.+.-|+++++.+..
T Consensus       161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v~~~  239 (242)
T 2qk2_A          161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEIKIK  239 (242)
T ss_dssp             HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCCCSC
T ss_pred             HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence            9888776 45789999999999999999999999999999999999999889999999999999999999999987653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.73  E-value=7.1e-18  Score=163.39  Aligned_cols=123  Identities=15%  Similarity=0.281  Sum_probs=110.8

Q ss_pred             CCchhchHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHH---HHHhhhhhhhcc-CcchHHHHHHHHHHHHhhc
Q psy6156          11 KGPVELFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYK---VTRILFPLIIAE-EHPINLVAIKMLTKVIEQN   80 (176)
Q Consensus        11 ~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~---~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~   80 (176)
                      +.++|||+-.++|.+++++.|++..||+||      ++..++|+.   +++.|...+.++ |||.+++||+++.++++..
T Consensus        86 ~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~  165 (986)
T 2iw3_A           86 SPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA  165 (986)
T ss_dssp             CTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence            346899999999999999999999999985      777899987   455555556544 8999999999999999766


Q ss_pred             CCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156          81 GKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL  134 (176)
Q Consensus        81 ~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L  134 (176)
                       ++++...||+++|.+.++|||++++|.|+|..||.++|..+||.|++||++.|
T Consensus       166 -~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~  218 (986)
T 2iw3_A          166 -KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSL  218 (986)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHH
T ss_pred             -HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHH
Confidence             89999999999999999999999999999999999999999999999999866

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.54  E-value=4.9e-14  Score=119.17  Aligned_cols=143  Identities=17%  Similarity=0.226  Sum_probs=122.4

Q ss_pred             hhHHHHHhCCC--chhch-HhhHHHHHHHHhcChhHHHHHHH------HHhhcChHHHHHhhhhhhhccCcchHHHHHHH
Q psy6156           2 LTKVIEQNGKG--PVELF-LPNIMPALLQAYENQDSCVRKCS------VFCMVALYKVTRILFPLIIAEEHPINLVAIKM   72 (176)
Q Consensus         2 ~t~~~e~~~~~--~~e~~-l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkm   72 (176)
                      ++.++++.+..  .+.++ ...++|-|++..+|+.+.||+++      +....+|..+++.+...+.+..|++..+++..
T Consensus       111 L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~  190 (266)
T 2of3_A          111 CKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLV  190 (266)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            34455555332  23333 46899999999999999999986      33346888899999999999999999999999


Q ss_pred             HHHHHhhcCCchHHhhhchHH---HHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhh
Q psy6156          73 LTKVIEQNGKGPVELFLPNIM---PALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRS  149 (176)
Q Consensus        73 Ltklv~~~~~d~l~~~L~~ii---P~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~  149 (176)
                      +..+++..|...     ...+   |.+.+.++|.+++||+||+.|++++|..+|+. +..|+..|++.++.+++-.++|+
T Consensus       191 l~~li~~~G~~~-----~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~-v~k~lg~L~~~~~~~l~er~~r~  264 (266)
T 2of3_A          191 IEYYITNAGISP-----LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERIKRT  264 (266)
T ss_dssp             HHHHHHHHCSGG-----GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH-HHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCc-----cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH-HHHHHhcCCHHHHHHHHHHHhhc
Confidence            999999999872     3457   99999999999999999999999999999999 99999999999999999999997


Q ss_pred             c
Q psy6156         150 Q  150 (176)
Q Consensus       150 ~  150 (176)
                      .
T Consensus       265 ~  265 (266)
T 2of3_A          265 G  265 (266)
T ss_dssp             T
T ss_pred             c
Confidence            4

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.25  E-value=6.7e-11  Score=97.67  Aligned_cols=137  Identities=16%  Similarity=0.232  Sum_probs=107.7

Q ss_pred             hchHhhHHHHHHHH-hcChhHHHHHHHH------H-hhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCch--
Q psy6156          15 ELFLPNIMPALLQA-YENQDSCVRKCSV------F-CMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGP--   84 (176)
Q Consensus        15 e~~l~~iL~~LLd~-~~d~e~~VrkAav------~-~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~--   84 (176)
                      ..+...++|.|++. .+|....+|++++      + ...+++.++..+.+.+++..++...+++..|.++++..+...  
T Consensus        97 ~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~  176 (278)
T 4ffb_C           97 ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVN  176 (278)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCC
Confidence            45667899999986 6887766666541      1 123567799999999999999999999999999999887764  


Q ss_pred             HHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc---cccccccCcHHHHHHHHHHHhhhcc
Q psy6156          85 VELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV---LSPYINKLSGAKLKLLQLYIKRSQT  151 (176)
Q Consensus        85 l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~---l~P~L~~L~~~k~kLl~iYi~R~~~  151 (176)
                      ....++.+++.+..+++|++++||++|..|++++|..+|+..   ..+++..|.+.|++-++-..++..+
T Consensus       177 ~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~  246 (278)
T 4ffb_C          177 VQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGD  246 (278)
T ss_dssp             HHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC
T ss_pred             chhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCC
Confidence            456788999999999999999999999999999999999862   2468899999999988777766543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.63  E-value=1.1e-07  Score=80.80  Aligned_cols=119  Identities=16%  Similarity=0.226  Sum_probs=92.4

Q ss_pred             hhchHhhHHHHHHHHhcCh-------hHHHHHHH------HHhhcChHHHHHhhhh----hhhccCcchHHHHHHHHHHH
Q psy6156          14 VELFLPNIMPALLQAYENQ-------DSCVRKCS------VFCMVALYKVTRILFP----LIIAEEHPINLVAIKMLTKV   76 (176)
Q Consensus        14 ~e~~l~~iL~~LLd~~~d~-------e~~VrkAa------v~~~v~p~~~l~vL~p----~l~~~~~~~~~~aLkmLtkl   76 (176)
                      +++++..++|.+++.+.+.       +..+|+++      ++..++ ..+++.+.|    .+++.+|..+.+|+..+..+
T Consensus       315 ~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l  393 (462)
T 1ibr_B          315 AKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCI  393 (462)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            3456788999998888532       23677765      222233 445554444    55778999999999999999


Q ss_pred             HhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcc--ccccccC
Q psy6156          77 IEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVL--SPYINKL  134 (176)
Q Consensus        77 v~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l--~P~L~~L  134 (176)
                      .+..+++.+..+++.++|.+...++|+++.||++|..|+-.++..+|+. +  .||++.+
T Consensus       394 ~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~-~~~~~~l~~l  452 (462)
T 1ibr_B          394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA-AINDVYLAPL  452 (462)
T ss_dssp             SSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG-CCSTTTHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc-cccHHHHHHH
Confidence            9877667788899999999999999999999999999999999999986 4  4666543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.37  E-value=1.6e-06  Score=79.35  Aligned_cols=129  Identities=16%  Similarity=0.281  Sum_probs=103.4

Q ss_pred             hHHHHHhCCCchhchHhhHHHHHHHHhcChhH-HHHHHHH------Hhh----cChH--HHHHhhhhhhhccCcchHHHH
Q psy6156           3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDS-CVRKCSV------FCM----VALY--KVTRILFPLIIAEEHPINLVA   69 (176)
Q Consensus         3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~-~VrkAav------~~~----v~p~--~~l~vL~p~l~~~~~~~~~~a   69 (176)
                      +.+++..++ .+.++++.+++.+++.+.+.+. .||++++      +..    +.|+  .+++.|...+++.++.....+
T Consensus       581 ~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a  659 (861)
T 2bpt_A          581 AAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA  659 (861)
T ss_dssp             HHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            455666664 4789999999999999988765 7787642      111    2222  366677777777788889999


Q ss_pred             HHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156          70 IKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD--SCVRKCSVFCMVALYKEFGESVLSPYINKL  134 (176)
Q Consensus        70 LkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~--s~VRKaaVfClVal~~~lGe~~l~P~L~~L  134 (176)
                      ++++..+++..+ +.+.+.++.++|.+.+.+++.+  .+||.++..|+-.+...+|+. +.||++.+
T Consensus       660 ~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~-~~~~l~~~  724 (861)
T 2bpt_A          660 VGFIADISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD-FIPYLNDI  724 (861)
T ss_dssp             HHHHHHHHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG-GHHHHHHH
T ss_pred             HHHHHHHHHHhc-hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhh-HHHHHHHH
Confidence            999999997766 5788899999999999999876  899999999999999999997 99999754

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.25  E-value=1.8e-06  Score=80.43  Aligned_cols=117  Identities=20%  Similarity=0.337  Sum_probs=89.4

Q ss_pred             hhchHhhHHHHHHHHh-----------cC-----------hhHHHHHHH------HHhhcChHHHHH----hhhhhhhcc
Q psy6156          14 VELFLPNIMPALLQAY-----------EN-----------QDSCVRKCS------VFCMVALYKVTR----ILFPLIIAE   61 (176)
Q Consensus        14 ~e~~l~~iL~~LLd~~-----------~d-----------~e~~VrkAa------v~~~v~p~~~l~----vL~p~l~~~   61 (176)
                      +.+++..++|.+++.+           .|           .+-.||+++      ++... ++.++.    .+...+++.
T Consensus       293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~-~~~~~~~l~~~l~~~l~~~  371 (852)
T 4fdd_A          293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY-RDELLPHILPLLKELLFHH  371 (852)
T ss_dssp             HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhcCC
Confidence            5678888899998887           33           122567765      22222 334444    444456778


Q ss_pred             CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156          62 EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYIN  132 (176)
Q Consensus        62 ~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~  132 (176)
                      +|..+.+|+..+..+.+.. .+.+..++++++|.+...++|+++.||++|.+|+-.+...+++....+|+.
T Consensus       372 ~~~~R~aa~~alg~i~~~~-~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~  441 (852)
T 4fdd_A          372 EWVVKESGILVLGAIAEGC-MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLK  441 (852)
T ss_dssp             SHHHHHHHHHHHHHTTTTT-HHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH
T ss_pred             CHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            9999999999999999554 457778999999999999999999999999999999999888766666664

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.22  E-value=2.9e-06  Score=74.04  Aligned_cols=107  Identities=11%  Similarity=0.159  Sum_probs=85.7

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHH----HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchH
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYK----VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPV   85 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~----~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l   85 (176)
                      .+...++|.+++...|.+..||+++      +...++++.    +++.+...+++.+|.....|++.+..+.+..+++. 
T Consensus       199 ~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-  277 (588)
T 1b3u_A          199 NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI-  277 (588)
T ss_dssp             HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH-
T ss_pred             hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc-
Confidence            4567788889999999888999876      233355544    44445555677789999999999999997776643 


Q ss_pred             HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          86 ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        86 ~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                        ..++++|.+.+.++|++++||++|.+++-.+...+|.+
T Consensus       278 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  315 (588)
T 1b3u_A          278 --TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD  315 (588)
T ss_dssp             --HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred             --chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence              46788999999999999999999999999999988865

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.21  E-value=2.3e-06  Score=82.72  Aligned_cols=130  Identities=15%  Similarity=0.303  Sum_probs=101.6

Q ss_pred             hhHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHh-----hcChH----HHHHhhhhhhhccC-cchHHHHHH
Q psy6156           2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFC-----MVALY----KVTRILFPLIIAEE-HPINLVAIK   71 (176)
Q Consensus         2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~----~~l~vL~p~l~~~~-~~~~~~aLk   71 (176)
                      +.++.+..++. +.+|+..+++.++....|.+..||++++-+     ...+.    .+++.|.+.+.+.+ +.....++.
T Consensus       158 l~~~~~~~~~~-l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~  236 (1230)
T 1u6g_C          158 MADMLSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQ  236 (1230)
T ss_dssp             HHHHHHHTCSS-CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHHHHhHhH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence            45666766654 889999999999999999888999986221     11222    24566666665543 456667899


Q ss_pred             HHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156          72 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL  134 (176)
Q Consensus        72 mLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L  134 (176)
                      .+..+++..+ +.+.+++++++|.+.+.+.|.+.+||.++..++-.+....|++ +.||++.+
T Consensus       237 ~l~~l~~~~~-~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~l~~l  297 (1230)
T 1u6g_C          237 CIAAISRQAG-HRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VYPHVSTI  297 (1230)
T ss_dssp             HHHHHHHHSS-GGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHHHHHHH
T ss_pred             HHHHHHHHhH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-HHHhHHHH
Confidence            9999986655 4678899999999999999999999999999999999999988 99998654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.19  E-value=6.5e-06  Score=76.74  Aligned_cols=127  Identities=15%  Similarity=0.251  Sum_probs=101.3

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHHHHhh--c--------Ch--HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCc
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCSVFCM--V--------AL--YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKG   83 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAav~~~--v--------~p--~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d   83 (176)
                      ..+..++|.+.+...|.+.-+|++++...  +        .+  ...++.|.+.+++.++.....|...+.++.+..+.+
T Consensus       355 ~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~  434 (852)
T 4fdd_A          355 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ  434 (852)
T ss_dssp             GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence            34567888888888888888999873321  1        11  247777788888888889999999999998777666


Q ss_pred             hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHH
Q psy6156          84 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQ  143 (176)
Q Consensus        84 ~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~  143 (176)
                      .....++.++|.+.+.++|.++.||++|..++..++...|++ +.||++.+=+.=.++++
T Consensus       435 ~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~  493 (852)
T 4fdd_A          435 PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVFAFS  493 (852)
T ss_dssp             CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHH
Confidence            667789999999999999999999999999999999999988 99999766554444443

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.16  E-value=1.3e-05  Score=69.99  Aligned_cols=106  Identities=14%  Similarity=0.199  Sum_probs=86.1

Q ss_pred             hHhhHHHHHHHHhcChhHHHHHHH------HHhhcChH----HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          17 FLPNIMPALLQAYENQDSCVRKCS------VFCMVALY----KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        17 ~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~----~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      +...++|.+++.++|.++-||.++      +...+.++    .+++.|...+++.+|.....++..+..+.+..+.+.  
T Consensus       360 ~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--  437 (588)
T 1b3u_A          360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--  437 (588)
T ss_dssp             HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--
Confidence            345678888888899888899875      33334443    356666667788899999999999999998887763  


Q ss_pred             hhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          87 LFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        87 ~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                       ..+.++|.+.+.++|.+++||++|+.|+-.+...+|++
T Consensus       438 -~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~  475 (588)
T 1b3u_A          438 -FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE  475 (588)
T ss_dssp             -CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH
T ss_pred             -HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch
Confidence             34689999999999999999999999999999999875

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.14  E-value=1.1e-05  Score=73.74  Aligned_cols=111  Identities=16%  Similarity=0.238  Sum_probs=87.5

Q ss_pred             hhchHhhHHHHHHHHhcCh-------hHHHHHHH------HHhhcChHH----HHHhhhhhhhccCcchHHHHHHHHHHH
Q psy6156          14 VELFLPNIMPALLQAYENQ-------DSCVRKCS------VFCMVALYK----VTRILFPLIIAEEHPINLVAIKMLTKV   76 (176)
Q Consensus        14 ~e~~l~~iL~~LLd~~~d~-------e~~VrkAa------v~~~v~p~~----~l~vL~p~l~~~~~~~~~~aLkmLtkl   76 (176)
                      ..+++..++|.+++.+.+.       +-.+|+++      ++..++ ..    +++.+...+++.+|..+.+|+..+..+
T Consensus       318 ~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i  396 (861)
T 2bpt_A          318 ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNWRNREAAVMAFGSI  396 (861)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Confidence            4567788999999988742       23677765      222222 23    444445556788999999999999999


Q ss_pred             HhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          77 IEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        77 v~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      ++..+++.+.++++.++|.+...+.|+++.||.++.+|+-.++..+|+.
T Consensus       397 ~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  445 (861)
T 2bpt_A          397 MDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES  445 (861)
T ss_dssp             SSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhh
Confidence            9766668888999999999999999999999999999999999998864

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.09  E-value=2.3e-05  Score=75.82  Aligned_cols=130  Identities=12%  Similarity=0.248  Sum_probs=98.5

Q ss_pred             hhHHHHHhCCCchhchHhhHHHHHHHHhcChhH--HHHHHH------HHhhcChHH-------HHHhhhhhhhccCcchH
Q psy6156           2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDS--CVRKCS------VFCMVALYK-------VTRILFPLIIAEEHPIN   66 (176)
Q Consensus         2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~--~VrkAa------v~~~v~p~~-------~l~vL~p~l~~~~~~~~   66 (176)
                      +..+++.. ++.+.+|++.+++.+++...|...  .++.++      ++....++.       +++.|...+++..|...
T Consensus       458 L~~l~~~~-~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~  536 (1230)
T 1u6g_C          458 LTELVNVL-PGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKIT  536 (1230)
T ss_dssp             HHHHHHHS-TTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHc-hhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHH
Confidence            34566664 455789999999999999998752  555543      222234442       44444445566677777


Q ss_pred             HHHHHHHHHHHhhcCC------chHHhhhchHHHHHHHhh--cCCChhHHHHHHHHHHHHHHHhcCCcccccccc
Q psy6156          67 LVAIKMLTKVIEQNGK------GPVELFLPNIMPALLQAY--ENQDSCVRKCSVFCMVALYKEFGESVLSPYINK  133 (176)
Q Consensus        67 ~~aLkmLtklv~~~~~------d~l~~~L~~iiP~l~~a~--~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~  133 (176)
                      ..|+..+..+++..+.      ..+.+.++.++|.+...+  .|.+++||.+|++|+-.+....|+. +.||++.
T Consensus       537 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~-~~~~~~~  610 (1230)
T 1u6g_C          537 SEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN-LGSDLPN  610 (1230)
T ss_dssp             HHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG-CCTHHHH
T ss_pred             HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch-hhhhHHH
Confidence            7889999998877665      577889999999999999  8899999999999999999999988 8887754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.02  E-value=1.4e-05  Score=73.24  Aligned_cols=117  Identities=15%  Similarity=0.212  Sum_probs=88.8

Q ss_pred             hchHhhHHHHHHHHhc-------ChhHHHHHHHHHh------hcChHH----HHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156          15 ELFLPNIMPALLQAYE-------NQDSCVRKCSVFC------MVALYK----VTRILFPLIIAEEHPINLVAIKMLTKVI   77 (176)
Q Consensus        15 e~~l~~iL~~LLd~~~-------d~e~~VrkAav~~------~v~p~~----~l~vL~p~l~~~~~~~~~~aLkmLtklv   77 (176)
                      .+++..++|.+++...       |.+..+|+++..+      .++ +.    +++.+...+++.+|....+|+..+..+.
T Consensus       316 ~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~  394 (876)
T 1qgr_A          316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL  394 (876)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence            3456778888888874       2234677765221      122 23    4444455567789999999999999999


Q ss_pred             hhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc-cccccc
Q psy6156          78 EQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV-LSPYIN  132 (176)
Q Consensus        78 ~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~-l~P~L~  132 (176)
                      +..+++.+..+++.++|.+..+++|+++.||.+|.+|+-.++..+++.- ..||++
T Consensus       395 ~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~  450 (876)
T 1qgr_A          395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA  450 (876)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHH
Confidence            7777778888999999999999999999999999999999999888641 345654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.99  E-value=2.6e-05  Score=71.50  Aligned_cols=129  Identities=13%  Similarity=0.133  Sum_probs=96.6

Q ss_pred             HHHHhCCCchhchHhhHHHHHHHHhcChh--HHHHHHH------HHh----hcCh--HHHHHhhhhhhhcc-CcchHHHH
Q psy6156           5 VIEQNGKGPVELFLPNIMPALLQAYENQD--SCVRKCS------VFC----MVAL--YKVTRILFPLIIAE-EHPINLVA   69 (176)
Q Consensus         5 ~~e~~~~~~~e~~l~~iL~~LLd~~~d~e--~~VrkAa------v~~----~v~p--~~~l~vL~p~l~~~-~~~~~~~a   69 (176)
                      +++..+.+.+.+|+..++|.+++.+++..  ..+|+.+      ++.    .+.|  ..+++.|.+.+.+. ++.....|
T Consensus       591 l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a  670 (876)
T 1qgr_A          591 VLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAA  670 (876)
T ss_dssp             HHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence            33333424578999999999999998763  2566653      111    1334  34778888888776 78888899


Q ss_pred             HHHHHHHHhhcCCchHHhhhchHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHhcCCccccccccCc
Q psy6156          70 IKMLTKVIEQNGKGPVELFLPNIMPALLQAYEN--QDSCVRKCSVFCMVALYKEFGESVLSPYINKLS  135 (176)
Q Consensus        70 LkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~--~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~  135 (176)
                      +..+..++...+ +.+.+.+++++|.+.+.+.+  .+.++|.++..|+-.+...+|++ +.||++.+-
T Consensus       671 ~~~l~~l~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~-~~~~l~~~~  736 (876)
T 1qgr_A          671 VGLVGDLCRALQ-SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE-FKKYLEVVL  736 (876)
T ss_dssp             HHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG-GGGGHHHHH
T ss_pred             HHHHHHHHHHHH-HhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchh-HHHHHHHHH
Confidence            999999987666 56788899999999999987  46789999999999999999988 999986543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.78  E-value=0.00017  Score=58.96  Aligned_cols=127  Identities=11%  Similarity=0.064  Sum_probs=94.9

Q ss_pred             chHhhHHHHHHHHh-cChhHHHHHHH------HHh-----hcC-hHH--HHHhhhhhhhccCcchHHHHHHHHHHHHhhc
Q psy6156          16 LFLPNIMPALLQAY-ENQDSCVRKCS------VFC-----MVA-LYK--VTRILFPLIIAEEHPINLVAIKMLTKVIEQN   80 (176)
Q Consensus        16 ~~l~~iL~~LLd~~-~d~e~~VrkAa------v~~-----~v~-p~~--~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~   80 (176)
                      ..+..++..|.... +|++-.||.++      ++.     .+. ++.  ++..+...+.+.+....-++-..+..+++..
T Consensus        56 ~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~  135 (249)
T 2qk1_A           56 QNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYY  135 (249)
T ss_dssp             CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence            34456688888888 78887777664      222     333 553  6666666777777777778888999999888


Q ss_pred             CCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC--Ccccccc-ccCcHHHHHHH
Q psy6156          81 GKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE--SVLSPYI-NKLSGAKLKLL  142 (176)
Q Consensus        81 ~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe--~~l~P~L-~~L~~~k~kLl  142 (176)
                      ++......++.+++.+..+++|.++.||.++..++..+....+.  ..+.||+ +.+=+.=.+++
T Consensus       136 ~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l  200 (249)
T 2qk1_A          136 DPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV  200 (249)
T ss_dssp             CTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH
T ss_pred             cccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh
Confidence            77554334899999999999999999999999999999988885  4477787 76666544444

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.74  E-value=0.00018  Score=57.19  Aligned_cols=125  Identities=8%  Similarity=0.094  Sum_probs=82.9

Q ss_pred             HHHHHhCCCchhchHhhHHHHHHHHh-cChhHHHHHHHH------Hhh----cChH--HHHHhhhhhhhccCcchHHHHH
Q psy6156           4 KVIEQNGKGPVELFLPNIMPALLQAY-ENQDSCVRKCSV------FCM----VALY--KVTRILFPLIIAEEHPINLVAI   70 (176)
Q Consensus         4 ~~~e~~~~~~~e~~l~~iL~~LLd~~-~d~e~~VrkAav------~~~----v~p~--~~l~vL~p~l~~~~~~~~~~aL   70 (176)
                      .+++.+++ .....+..+++.|.... +|.+..||+++.      +..    +.++  .+++.|...+.+.+.....+|.
T Consensus        41 ~l~~~~~~-~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~  119 (242)
T 2qk2_A           41 KLLTDHPK-LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALR  119 (242)
T ss_dssp             HHHHHCSS-BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHH
T ss_pred             HHHccCCC-CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            44554332 23344567788888888 488877777652      211    2232  2666666666777778888888


Q ss_pred             HHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC-ccccccccCcH
Q psy6156          71 KMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES-VLSPYINKLSG  136 (176)
Q Consensus        71 kmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~-~l~P~L~~L~~  136 (176)
                      ..+..+++..+       ++.++|.+..+++|.++.||.+++.++-.+....|.+ .+.+|++.+-+
T Consensus       120 ~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p  179 (242)
T 2qk2_A          120 EAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT  179 (242)
T ss_dssp             HHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred             HHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence            88888886543       5678888888888889999998888888776666543 34566654433

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.70  E-value=0.00035  Score=58.97  Aligned_cols=120  Identities=9%  Similarity=0.123  Sum_probs=92.4

Q ss_pred             hhHHHHHhCCCchhchHhhHHHHHHHHhcCh--hHHHHHHHHHhh------cC----h----HHHHHhhhhhhhccCcch
Q psy6156           2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRKCSVFCM------VA----L----YKVTRILFPLIIAEEHPI   65 (176)
Q Consensus         2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~--e~~VrkAav~~~------v~----p----~~~l~vL~p~l~~~~~~~   65 (176)
                      +.++.++..++.+.+++..+++.++++..|.  ...||.+++-+.      +.    .    ..++++|...+++.++..
T Consensus       154 l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v  233 (462)
T 1ibr_B          154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV  233 (462)
T ss_dssp             HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHH
Confidence            3456666655667899999999999999998  578888763221      11    1    114556666666777888


Q ss_pred             HHHHHHHHHHHHhhcCCchHHhhhc-hHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156          66 NLVAIKMLTKVIEQNGKGPVELFLP-NIMPALLQAYENQDSCVRKCSVFCMVALYKEF  122 (176)
Q Consensus        66 ~~~aLkmLtklv~~~~~d~l~~~L~-~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l  122 (176)
                      ...+++.+..+++.. ++.+.++++ .++|.+..++.+...+||..|+..+..++...
T Consensus       234 r~~~~~~l~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~  290 (462)
T 1ibr_B          234 RVAALQNLVKIMSLY-YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE  290 (462)
T ss_dssp             HHHHHHHHHHHHHHC-GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            889999999999654 567778899 99999999999999999999999888887653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.46  E-value=0.00038  Score=53.26  Aligned_cols=87  Identities=17%  Similarity=0.259  Sum_probs=51.3

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALL   97 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~   97 (176)
                      ..++.|++.+.|.+..||.+++..  .+.....++.|...+++.++.....|++.|.++-.           ++.+|.+.
T Consensus        45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~  113 (201)
T 3ltj_A           45 RAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLI  113 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHH
Confidence            356666677777766677665322  23333456666666766666666777777666421           23455556


Q ss_pred             HhhcCCChhHHHHHHHHHHH
Q psy6156          98 QAYENQDSCVRKCSVFCMVA  117 (176)
Q Consensus        98 ~a~~~~~s~VRKaaVfClVa  117 (176)
                      +.++|+++.||.+|+.++-.
T Consensus       114 ~~l~d~~~~vr~~a~~aL~~  133 (201)
T 3ltj_A          114 KALKDEDWFVRIAAAFALGE  133 (201)
T ss_dssp             HHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHH
Confidence            66666666666666665543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.34  E-value=0.00082  Score=51.75  Aligned_cols=85  Identities=18%  Similarity=0.264  Sum_probs=37.3

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHH
Q psy6156          21 IMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQ   98 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~   98 (176)
                      .++.|++.+.|.+..||.+++..  .+.....++.|...+++.++.....|+..|.++-.           ++.+|.|.+
T Consensus        51 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~  119 (211)
T 3ltm_A           51 AVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIK  119 (211)
T ss_dssp             GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHH
Confidence            34444444444444444443211  11222334444444444444444444444443321           234455555


Q ss_pred             hhcCCChhHHHHHHHHHH
Q psy6156          99 AYENQDSCVRKCSVFCMV  116 (176)
Q Consensus        99 a~~~~~s~VRKaaVfClV  116 (176)
                      .++|+++.||.+|+.++-
T Consensus       120 ~l~d~~~~vr~~a~~aL~  137 (211)
T 3ltm_A          120 ALKDEDWFVRIAAAFALG  137 (211)
T ss_dssp             HTTCSSHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHH
Confidence            555555555555555554

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=97.29  E-value=0.0025  Score=49.22  Aligned_cols=105  Identities=13%  Similarity=0.083  Sum_probs=80.1

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHh-----hcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFC-----MVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      ..++.|++...+.+.-+++.+...     .-++..        .++.|..++.+.++.....|+..|..+.. .+++...
T Consensus       128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~  206 (252)
T 4hxt_A          128 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPTSAIK  206 (252)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT-SBHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            478899999988776666654221     123332        77888888998888899999999999984 3343333


Q ss_pred             hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      ... ..++|.+.+.+++.+++||+.|..++-.+...-+++
T Consensus       207 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  246 (252)
T 4hxt_A          207 AIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE  246 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred             HHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence            333 578999999999999999999999999998877666

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=97.27  E-value=0.0018  Score=49.43  Aligned_cols=96  Identities=16%  Similarity=0.275  Sum_probs=69.9

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHH
Q psy6156          21 IMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQ   98 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~   98 (176)
                      .++.|++.+.|.+..||.+++..  .+.....+..|...+++.++.....|+..|.++-.           ++.+|.|.+
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~  145 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIK  145 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------GGGHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHH
Confidence            56777788888888888876433  23344577778888888888888888888877631           467788888


Q ss_pred             hhcCCChhHHHHHHHHHHHHHHHhcCCcccccc
Q psy6156          99 AYENQDSCVRKCSVFCMVALYKEFGESVLSPYI  131 (176)
Q Consensus        99 a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L  131 (176)
                      .++|+++.||.+|+.++-.+    |.++..|.|
T Consensus       146 ~l~d~~~~vr~~A~~aL~~~----~~~~~~~~L  174 (201)
T 3ltj_A          146 ALKDEDGWVRQSAADALGEI----GGERVRAAM  174 (201)
T ss_dssp             HTTCSSHHHHHHHHHHHHHH----CSHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHh----CchhHHHHH
Confidence            88899999999998888765    554444433

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.18  E-value=0.0024  Score=46.24  Aligned_cols=83  Identities=17%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             HHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHh
Q psy6156          22 MPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQA   99 (176)
Q Consensus        22 L~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a   99 (176)
                      ++.|++..+|.+..||.+++..  .+.-...+..|...+++.+|.....|+..|.++-.           ++.+|.|.+.
T Consensus        44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~  112 (131)
T 1te4_A           44 FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKL  112 (131)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHH
Confidence            4888888889888888876433  23334577888888888889888899988887631           3568888999


Q ss_pred             hcCCChhHHHHHHHHH
Q psy6156         100 YENQDSCVRKCSVFCM  115 (176)
Q Consensus       100 ~~~~~s~VRKaaVfCl  115 (176)
                      ++|+++.||.+|+.++
T Consensus       113 l~d~~~~vr~~A~~aL  128 (131)
T 1te4_A          113 AETGTGFARKVAVNYL  128 (131)
T ss_dssp             TTSCCTHHHHHHHHHG
T ss_pred             HhCCCHHHHHHHHHHH
Confidence            9999999999998876

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=97.17  E-value=0.0025  Score=48.91  Aligned_cols=98  Identities=15%  Similarity=0.274  Sum_probs=75.3

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALL   97 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~   97 (176)
                      ..++.|++.++|.+..||.+++..  .+.-...+..|...+++.++.....|+..|.++-.           ++.+|.|.
T Consensus        81 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~  149 (211)
T 3ltm_A           81 RAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLI  149 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------HHHHHHHH
Confidence            367888888899888899887433  23344577888888999899999999999988731           35788899


Q ss_pred             HhhcCCChhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156          98 QAYENQDSCVRKCSVFCMVALYKEFGESVLSPYIN  132 (176)
Q Consensus        98 ~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~  132 (176)
                      +.++|+++.||.+|+.++-.+    |.++..|.|.
T Consensus       150 ~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~  180 (211)
T 3ltm_A          150 KALKDEDGWVRQSAADALGEI----GGERVRAAME  180 (211)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHH----CSHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHh----CchhHHHHHH
Confidence            999999999999999998865    5544444443

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=97.10  E-value=0.0025  Score=48.56  Aligned_cols=100  Identities=14%  Similarity=0.270  Sum_probs=76.0

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHhh-----cChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFCM-----VALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~~-----v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      ..+|.|++...+.+..+|+.+....     -.++.        .++.|...+++.++.....|+..|..+. ..+++...
T Consensus        54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~  132 (210)
T 4db6_A           54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQIQ  132 (210)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHH-cCCHHHHH
Confidence            4789999999888777777652221     12332        5677888888888888889999999998 34444443


Q ss_pred             hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      ..+ ...+|.|++.+++.+.+||+.|++|+-.++.
T Consensus       133 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A          133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            433 5799999999999999999999999998874

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=97.05  E-value=0.0029  Score=53.33  Aligned_cols=104  Identities=12%  Similarity=0.114  Sum_probs=76.4

Q ss_pred             hchHhhHHHHHHHHhcChhHHHHHHHHHh-----hcChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156          15 ELFLPNIMPALLQAYENQDSCVRKCSVFC-----MVALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNG   81 (176)
Q Consensus        15 e~~l~~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~   81 (176)
                      ...+..++|.|++...+.+..++..+...     ...++        .+++.|...+.+.++.....|+..|..+... .
T Consensus       187 ~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~  265 (450)
T 2jdq_A          187 FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG-D  265 (450)
T ss_dssp             GGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-C
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC-C
Confidence            34557889999999988776666654211     11222        2677777888888899999999999999843 3


Q ss_pred             CchHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          82 KGPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        82 ~d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      .+.....+ ..++|.+.+.+++.++.||++|++++-.+.
T Consensus       266 ~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~  304 (450)
T 2jdq_A          266 DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT  304 (450)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            33333333 369999999999999999999999997765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=96.96  E-value=0.0042  Score=52.27  Aligned_cols=101  Identities=14%  Similarity=0.193  Sum_probs=77.7

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHh-----hcChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFC-----MVALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      .++|.|++...+.+..+|.+++..     .-.++        ..++.|..++++.++.....|+..|..+. ..+++...
T Consensus       234 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~-~~~~~~~~  312 (450)
T 2jdq_A          234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT-AGNRAQIQ  312 (450)
T ss_dssp             TTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT-TSCHHHHH
T ss_pred             CcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHH
Confidence            478899999988877777765221     11222        36777888888888999999999999998 34455555


Q ss_pred             hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      ..+ ..++|.+.+.+.+.+++||++|.+++..+...
T Consensus       313 ~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          313 TVIDANIFPALISILQTAEFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            445 48999999999999999999999999988754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=96.95  E-value=0.007  Score=47.25  Aligned_cols=98  Identities=14%  Similarity=0.260  Sum_probs=74.9

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHh-----hcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156          21 IMPALLQAYENQDSCVRKCSVFC-----MVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL   87 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav~~-----~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~   87 (176)
                      .+|.|++...+.+..+|+.+...     .-++..        .++.|...+++.++.....|+..|..+. ..+++....
T Consensus        97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~-~~~~~~~~~  175 (252)
T 4db8_A           97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA-SGGNEQIQA  175 (252)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSCHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCChHHHHH
Confidence            78999999988777777765221     122222        6778888888888889999999999998 334443333


Q ss_pred             hh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          88 FL-PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        88 ~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      .. ...+|.|++.+++.+.+||+.|..++-.++
T Consensus       176 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  208 (252)
T 4db8_A          176 VIDAGALPALVQLLSSPNEQILQEALWALSNIA  208 (252)
T ss_dssp             HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence            33 688999999999999999999999998886

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=96.90  E-value=0.0064  Score=53.35  Aligned_cols=105  Identities=10%  Similarity=0.188  Sum_probs=77.9

Q ss_pred             hchHhhHHHHHHHHhcChhHHHHHHHHHh-----hcChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156          15 ELFLPNIMPALLQAYENQDSCVRKCSVFC-----MVALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNG   81 (176)
Q Consensus        15 e~~l~~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~   81 (176)
                      ......++|.|++...+.+..|+..+...     .-+++        .+++.|...+.+.+|.....|+..|..++. .+
T Consensus       252 ~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~-~~  330 (530)
T 1wa5_B          252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT-GN  330 (530)
T ss_dssp             HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT-SC
T ss_pred             HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc-CC
Confidence            34556789999999988776676654221     12232        356778888888899999999999999983 33


Q ss_pred             CchHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          82 KGPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        82 ~d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      .+.....+ ..++|.+...+.+.++.||++|++++-.+..
T Consensus       331 ~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          331 DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA  370 (530)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            33333333 4799999999999999999999999988763

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=96.85  E-value=0.0052  Score=49.21  Aligned_cols=89  Identities=11%  Similarity=0.106  Sum_probs=46.6

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHh--hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFC--MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALL   97 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~--~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~   97 (176)
                      .+++.|+....|.+..||.++...  .+.....+..|...+++.++.....|+..|.++-    .     .-+..+|.+.
T Consensus       128 ~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~-----~~~~~~~~L~  198 (280)
T 1oyz_A          128 KIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININK----Y-----DNSDIRDCFV  198 (280)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHT----C-----CCHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc----c-----CcHHHHHHHH
Confidence            345555555555555555544222  1222234555555555555555555555554431    0     1235566677


Q ss_pred             HhhcCCChhHHHHHHHHHHH
Q psy6156          98 QAYENQDSCVRKCSVFCMVA  117 (176)
Q Consensus        98 ~a~~~~~s~VRKaaVfClVa  117 (176)
                      +.++|.++.||++|+.++-.
T Consensus       199 ~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          199 EMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             HHTTCSCHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHH
Confidence            77777777777777766643

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=96.84  E-value=0.0063  Score=47.54  Aligned_cols=100  Identities=14%  Similarity=0.266  Sum_probs=73.4

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHh--hc---ChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFC--MV---ALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~--~v---~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      ..+|.|++...+.+..++..+...  .+   .++        ..++.|...+++.++.....|+..|..+.. .......
T Consensus        54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~  132 (252)
T 4db8_A           54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQ  132 (252)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT-SCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc-CCchHHH
Confidence            478899999988776666654221  11   222        167778888888888888899999999873 2222212


Q ss_pred             hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      ... ...+|.+++.+++.+..||+.|.+|+..+..
T Consensus       133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~  167 (252)
T 4db8_A          133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            233 4689999999999999999999999988764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=96.83  E-value=0.0042  Score=47.94  Aligned_cols=100  Identities=14%  Similarity=0.155  Sum_probs=74.8

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHh---h--cChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFC---M--VALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~---~--v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      ..++.|++...+.+..++..+...   +  ..++        ..++.|...+.+.++.....|+..|..+... +++...
T Consensus        86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~  164 (252)
T 4hxt_A           86 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIK  164 (252)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHH
Confidence            368888999888777677654211   1  2232        2677888888888888999999999999843 333322


Q ss_pred             hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      ... ...+|.+.+.+++.+++||+.|.+|+-.++.
T Consensus       165 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  199 (252)
T 4hxt_A          165 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS  199 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence            222 5799999999999999999999999988874

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=96.71  E-value=0.00056  Score=49.69  Aligned_cols=96  Identities=10%  Similarity=0.078  Sum_probs=59.5

Q ss_pred             CCchhchHhhHHHHHHHHhcChhHHHHHHHHHhh--cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhh
Q psy6156          11 KGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM--VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELF   88 (176)
Q Consensus        11 ~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~--v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~   88 (176)
                      +.+...+-...++.++...+|.+..||.+++..+  +.... +..|...+++.++.....|+..|.++-.          
T Consensus         3 ~~~~~~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~----------   71 (131)
T 1te4_A            3 SSHHHHHHSSGLVPRGSHMADENKWVRRDVSTALSRMGDEA-FEPLLESLSNEDWRIRGAAAWIIGNFQD----------   71 (131)
T ss_dssp             ------------------CCSSCCCSSSSCCSSTTSCSSTT-HHHHHHGGGCSCHHHHHHHHHHHGGGCS----------
T ss_pred             cccccccccccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH-HHHHHHHHcCCCHHHHHHHHHHHHhcCC----------
Confidence            3445556667888899999998888888763322  22222 5788888888888888888888766431          


Q ss_pred             hchHHHHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156          89 LPNIMPALLQAYENQDSCVRKCSVFCMVAL  118 (176)
Q Consensus        89 L~~iiP~l~~a~~~~~s~VRKaaVfClVal  118 (176)
                       +..+|.|.+.++|+++.||.+|+.++-.+
T Consensus        72 -~~a~~~L~~~L~d~~~~VR~~A~~aL~~~  100 (131)
T 1te4_A           72 -ERAVEPLIKLLEDDSGFVRSGAARSLEQI  100 (131)
T ss_dssp             -HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence             35688899999999999999999998754

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=96.70  E-value=0.0099  Score=54.11  Aligned_cols=72  Identities=11%  Similarity=0.076  Sum_probs=55.7

Q ss_pred             ChHHHH---HhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156          46 ALYKVT---RILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF  122 (176)
Q Consensus        46 ~p~~~l---~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l  122 (176)
                      .|+..+   +.|.--+++.++-....|++.|..+..       .+..+.++|.+.+++.|+++.|||+|++|+..+|..-
T Consensus       101 ~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-------~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~  173 (618)
T 1w63_A          101 RQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-------SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV  173 (618)
T ss_dssp             CHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence            455433   344444566677777889999998861       2356789999999999999999999999999999865


Q ss_pred             cC
Q psy6156         123 GE  124 (176)
Q Consensus       123 Ge  124 (176)
                      .+
T Consensus       174 p~  175 (618)
T 1w63_A          174 PE  175 (618)
T ss_dssp             GG
T ss_pred             hH
Confidence            54

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=96.66  E-value=0.016  Score=44.05  Aligned_cols=98  Identities=14%  Similarity=0.156  Sum_probs=73.0

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHh--h---cChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156          21 IMPALLQAYENQDSCVRKCSVFC--M---VALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL   87 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav~~--~---v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~   87 (176)
                      .+|.|++...+.+..+++.+...  .   -.++.        .++.|...+++.+......|+..|..++. .+++....
T Consensus        97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~-~~~~~~~~  175 (210)
T 4db6_A           97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQKQA  175 (210)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT-SCHHHHHH
T ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc-CCcHHHHH
Confidence            78899999998876666654211  1   12222        57788888888888888899999999984 33433333


Q ss_pred             hh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          88 FL-PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        88 ~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      .. ...+|.|.+.+++.+++||+.|..++-.++
T Consensus       176 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            32 478999999999999999999999987663

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=96.65  E-value=0.0049  Score=55.64  Aligned_cols=93  Identities=13%  Similarity=0.229  Sum_probs=60.0

Q ss_pred             HHHHHHHHhcChhHHHHHHH-H----HhhcChHHHHHhh---hhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchH
Q psy6156          21 IMPALLQAYENQDSCVRKCS-V----FCMVALYKVTRIL---FPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNI   92 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAa-v----~~~v~p~~~l~vL---~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~i   92 (176)
                      .++.++..+.+.+..+|+.+ +    +....|+..+-+.   ..-+++.++.....|++.|..+.       ..+..+.+
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~l  122 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------VDKITEYL  122 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHHH
Confidence            34455566777777777764 1    1112455433333   33355666667777877776653       23355677


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          93 MPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        93 iP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      +|.+.++..|+++.|||+|+.|+..+|.
T Consensus       123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~  150 (591)
T 2vgl_B          123 CEPLRKCLKDEDPYVRKTAAVCVAKLHD  150 (591)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence            8888888888888888888888888887

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=96.53  E-value=0.0061  Score=53.47  Aligned_cols=102  Identities=13%  Similarity=0.159  Sum_probs=79.0

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHh--hc---ChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFC--MV---ALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~--~v---~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      .++|.|++...+.+..||.+++..  .+   .++        ..++.|..++++.+|.....|+..|..+. ..+++...
T Consensus       299 ~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~-~~~~~~~~  377 (530)
T 1wa5_B          299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT-AGNTEQIQ  377 (530)
T ss_dssp             TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCHHHHH
T ss_pred             CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHH
Confidence            578899999988877777765221  11   122        36777888888889999999999999998 44555555


Q ss_pred             hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156          87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKEF  122 (176)
Q Consensus        87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l  122 (176)
                      ..+ ..++|.|++.+.+.+.+||++|.+++-.+....
T Consensus       378 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~  414 (530)
T 1wa5_B          378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG  414 (530)
T ss_dssp             HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence            555 479999999999999999999999999887653

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=96.52  E-value=0.0076  Score=55.26  Aligned_cols=95  Identities=8%  Similarity=0.122  Sum_probs=66.4

Q ss_pred             HHHHHHHhcChhHHHHHHH-----HHhhcChHHHHHhhhhh---hhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156          22 MPALLQAYENQDSCVRKCS-----VFCMVALYKVTRILFPL---IIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM   93 (176)
Q Consensus        22 L~~LLd~~~d~e~~VrkAa-----v~~~v~p~~~l~vL~p~---l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii   93 (176)
                      .+.++..+.+++-..++..     ....-.|+..+-+...+   +++.++-..-.||+.|..+..       .+..+.++
T Consensus        76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~~~~l~  148 (621)
T 2vgl_A           76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-------REMAEAFA  148 (621)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHHHHHHT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHHHHHHH
Confidence            3444555555566666654     11123455544444444   455566667789999999862       44678999


Q ss_pred             HHHHHhh--cCCChhHHHHHHHHHHHHHHHhc
Q psy6156          94 PALLQAY--ENQDSCVRKCSVFCMVALYKEFG  123 (176)
Q Consensus        94 P~l~~a~--~~~~s~VRKaaVfClVal~~~lG  123 (176)
                      |.+.+++  .|.++.|||+|+.|+..+|..-.
T Consensus       149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p  180 (621)
T 2vgl_A          149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTSP  180 (621)
T ss_dssp             THHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh
Confidence            9999999  99999999999999999998543

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.43  E-value=0.0043  Score=53.95  Aligned_cols=106  Identities=15%  Similarity=0.180  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHhcChhHHHHHHH--HHhhcC--hHHHHHhhhhhh---hccCcchHHHHHHHHHHHHhhcCCchHHhhhch
Q psy6156          19 PNIMPALLQAYENQDSCVRKCS--VFCMVA--LYKVTRILFPLI---IAEEHPINLVAIKMLTKVIEQNGKGPVELFLPN   91 (176)
Q Consensus        19 ~~iL~~LLd~~~d~e~~VrkAa--v~~~v~--p~~~l~vL~p~l---~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~   91 (176)
                      -.+.+.++.++..++-.+|+-.  -++.++  ++.++=+...+.   ++.++-..-.||+.|.++.       ..+.+..
T Consensus        67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~-------~~~m~~~  139 (355)
T 3tjz_B           67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT-------DSTMLQA  139 (355)
T ss_dssp             HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHC-------CTTTHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCC-------CHHHHHH
Confidence            3678888888888888888854  111122  344554444443   4445555567999999987       3446788


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccc
Q psy6156          92 IMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYIN  132 (176)
Q Consensus        92 iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~  132 (176)
                      +.|.+.+++.|.++.|||+|++|...++..-.|- ++.+++
T Consensus       140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~-v~~~~~  179 (355)
T 3tjz_B          140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV-VKRWVN  179 (355)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH-HHTTHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH-HHHHHH
Confidence            9999999999999999999999998887665554 444444

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=96.11  E-value=0.039  Score=48.09  Aligned_cols=104  Identities=13%  Similarity=0.205  Sum_probs=77.6

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHHHHh-----hcChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCC
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCSVFC-----MVALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGK   82 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~   82 (176)
                      .....++|.|++...+.+.-|+..+...     .-+..        .+++.|..++.+.++.....|+..|..++ ..+.
T Consensus       240 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~-~~~~  318 (528)
T 4b8j_A          240 EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV-TGDD  318 (528)
T ss_dssp             HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH-cCCH
Confidence            4456789999999988776666654221     11222        25677888888888889999999999998 3344


Q ss_pred             chHHhhh-chHHHHHHHhhcCC-ChhHHHHHHHHHHHHHH
Q psy6156          83 GPVELFL-PNIMPALLQAYENQ-DSCVRKCSVFCMVALYK  120 (176)
Q Consensus        83 d~l~~~L-~~iiP~l~~a~~~~-~s~VRKaaVfClVal~~  120 (176)
                      +.....+ ..++|.|...+.+. ++.||+.|++++-.+..
T Consensus       319 ~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          319 AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            4444444 57899999999999 99999999999988864

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=96.10  E-value=0.041  Score=43.87  Aligned_cols=91  Identities=14%  Similarity=0.221  Sum_probs=47.6

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHhh--cC-hH----HHHHhhhh-hhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchH
Q psy6156          21 IMPALLQAYENQDSCVRKCSVFCM--VA-LY----KVTRILFP-LIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNI   92 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav~~~--v~-p~----~~l~vL~p-~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~i   92 (176)
                      .++.|++...|.+..||.++...+  +. +.    ..++.|.. .+++.++.....++..|.++....+     ..-+.+
T Consensus        55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-----~~~~~~  129 (280)
T 1oyz_A           55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKI  129 (280)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----cccHHH
Confidence            566777777777777777653222  21 11    13333332 2345566666677777776642211     112344


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHH
Q psy6156          93 MPALLQAYENQDSCVRKCSVFCMV  116 (176)
Q Consensus        93 iP~l~~a~~~~~s~VRKaaVfClV  116 (176)
                      +|.+.+.++|+++.||.+|+.++-
T Consensus       130 ~~~L~~~l~d~~~~vR~~a~~aL~  153 (280)
T 1oyz_A          130 VEQSQITAFDKSTNVRRATAFAIS  153 (280)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHH
Confidence            555555555555555555555554

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=95.84  E-value=0.042  Score=47.85  Aligned_cols=101  Identities=13%  Similarity=0.189  Sum_probs=72.4

Q ss_pred             hHHHHHHHHhcChh-HHHHHHHHHhh-----cChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchH
Q psy6156          20 NIMPALLQAYENQD-SCVRKCSVFCM-----VALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPV   85 (176)
Q Consensus        20 ~iL~~LLd~~~d~e-~~VrkAav~~~-----v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l   85 (176)
                      .++|.|++...+.+ ..+|..+....     -.++        ..++.|..++.+.++.....|+..|..+... +++.-
T Consensus       117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~  195 (528)
T 4b8j_A          117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGD-SPKCR  195 (528)
T ss_dssp             TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHT-CHHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-ChhhH
Confidence            57899999998775 66666542221     1232        2677777888888888888899999999842 22212


Q ss_pred             Hhhh-chHHHHHHHhh-cCCChhHHHHHHHHHHHHHHH
Q psy6156          86 ELFL-PNIMPALLQAY-ENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        86 ~~~L-~~iiP~l~~a~-~~~~s~VRKaaVfClVal~~~  121 (176)
                      ...+ ...+|.|++.+ ++.+.+|++.|++|+..++..
T Consensus       196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            2222 26899999999 789999999999999988753

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=95.78  E-value=0.039  Score=49.70  Aligned_cols=101  Identities=13%  Similarity=0.119  Sum_probs=74.6

Q ss_pred             HhhHHHHHHHHhcChhHHHHHHHHHh--hcChHH----HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhch
Q psy6156          18 LPNIMPALLQAYENQDSCVRKCSVFC--MVALYK----VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPN   91 (176)
Q Consensus        18 l~~iL~~LLd~~~d~e~~VrkAav~~--~v~p~~----~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~   91 (176)
                      ...+++.+.....|.+..+|..|+-.  .+....    ++..+...+.+.++-....|...+.++. +.++|.+..  +.
T Consensus        84 ~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~-~~~p~~~~~--~~  160 (591)
T 2vgl_B           84 AIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLH-DINAQMVED--QG  160 (591)
T ss_dssp             HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH-HSSCCCHHH--HH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-hhChhhccc--cc
Confidence            34456666667778888888876322  222233    3444555667778888889999999999 467776643  57


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          92 IMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        92 iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      ++|.+.+.++|+++.||.+|+.++-.++..
T Consensus       161 ~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          161 FLDSLRDLIADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence            999999999999999999999999886543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.58  E-value=0.014  Score=48.87  Aligned_cols=81  Identities=11%  Similarity=0.132  Sum_probs=66.0

Q ss_pred             HHhhhhhhh----ccCcchHHHHHHHHHHHHhhcCCc---hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhc
Q psy6156          51 TRILFPLII----AEEHPINLVAIKMLTKVIEQNGKG---PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFG  123 (176)
Q Consensus        51 l~vL~p~l~----~~~~~~~~~aLkmLtklv~~~~~d---~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lG  123 (176)
                      +..+..++.    +.+......++.+|+.+++++...   ........++|.|++-+.|++..||.++.-++..++.+.+
T Consensus        85 lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~  164 (266)
T 2of3_A           85 SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG  164 (266)
T ss_dssp             HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC
Confidence            334566654    667888889999999998777554   3455678999999999999999999999999999998887


Q ss_pred             CCcccccc
Q psy6156         124 ESVLSPYI  131 (176)
Q Consensus       124 e~~l~P~L  131 (176)
                      ...+.+|+
T Consensus       165 ~~~v~~~l  172 (266)
T 2of3_A          165 PLKMTPML  172 (266)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777777

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.11  E-value=0.071  Score=50.50  Aligned_cols=103  Identities=11%  Similarity=0.116  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHh------hcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhhc----------CCchHHhhhchHH
Q psy6156          33 DSCVRKCSVFC------MVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQN----------GKGPVELFLPNIM   93 (176)
Q Consensus        33 e~~VrkAav~~------~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~----------~~d~l~~~L~~ii   93 (176)
                      ...||.++.+.      .++++.   +++.+...+.+.+.+....|...+..+++..          .++.+.++++.++
T Consensus       471 ~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll  550 (960)
T 1wa5_C          471 HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILL  550 (960)
T ss_dssp             CHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHH
T ss_pred             CceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHH
Confidence            67888876322      235543   5555556667767788899999999998743          3567889999999


Q ss_pred             HHHHHhhcCC-----ChhHHHHHHHHHHHHHHHhcCCccccccccCcH
Q psy6156          94 PALLQAYENQ-----DSCVRKCSVFCMVALYKEFGESVLSPYINKLSG  136 (176)
Q Consensus        94 P~l~~a~~~~-----~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~  136 (176)
                      +.+...++..     +......+..|+-.+....|++ +.||+..+-+
T Consensus       551 ~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~-~~p~~~~l~~  597 (960)
T 1wa5_C          551 KNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS-IQPLFPQLLA  597 (960)
T ss_dssp             HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT-TGGGHHHHHH
T ss_pred             HHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHh-hhhHHHHHHH
Confidence            9999999885     2335568899999999999987 9999987664

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=94.84  E-value=0.055  Score=50.96  Aligned_cols=129  Identities=12%  Similarity=0.204  Sum_probs=80.5

Q ss_pred             HHHHHhCCCchhchHhhHHHHHHHHhcCh--hHHHHH----H--HHHhhcChHHHHH----hhhhhhh-------cc--C
Q psy6156           4 KVIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRK----C--SVFCMVALYKVTR----ILFPLII-------AE--E   62 (176)
Q Consensus         4 ~~~e~~~~~~~e~~l~~iL~~LLd~~~d~--e~~Vrk----A--av~~~v~p~~~l~----vL~p~l~-------~~--~   62 (176)
                      .+.+..+ +.+.||++.++..+.+.....  +.-.+.    |  .++..++++...+    .+.|+++       ..  +
T Consensus       569 ~l~~~~~-~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~  647 (971)
T 2x1g_F          569 ELCRDCQ-LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKT  647 (971)
T ss_dssp             HHHHHCH-HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---C
T ss_pred             HHHHHHH-HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4454444 347899999999888887752  222222    2  1444455343222    2233321       11  1


Q ss_pred             c---chHHHHHHHHHHHHhhcC------------CchHHhhhchHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHhcCC
Q psy6156          63 H---PINLVAIKMLTKVIEQNG------------KGPVELFLPNIMPALLQAYEN--QDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        63 ~---~~~~~aLkmLtklv~~~~------------~d~l~~~L~~iiP~l~~a~~~--~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      .   .....++.+|++++...+            ++.+....+.++|.+.+.+++  .+++|..++..++=.+...+|++
T Consensus       648 ~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~  727 (971)
T 2x1g_F          648 PAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSS  727 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhh
Confidence            1   233457888888876554            346777889999998888754  36799999999999999999998


Q ss_pred             ccccccccC
Q psy6156         126 VLSPYINKL  134 (176)
Q Consensus       126 ~l~P~L~~L  134 (176)
                       +.||++.+
T Consensus       728 -~~p~l~~~  735 (971)
T 2x1g_F          728 -FQPMLQDL  735 (971)
T ss_dssp             --CTHHHHH
T ss_pred             -ccccHHHH
Confidence             99997643

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=94.83  E-value=0.11  Score=45.85  Aligned_cols=99  Identities=9%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHh-----hcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156          21 IMPALLQAYENQDSCVRKCSVFC-----MVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL   87 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav~~-----~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~   87 (176)
                      ++|.|++...+.+..++..++..     .-..+.        .++.|..++.+.+......|...|..+. ..+.+....
T Consensus       275 ~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~-a~~~~~~~~  353 (510)
T 3ul1_B          275 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT-AGRQDQIQQ  353 (510)
T ss_dssp             CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHT-TSCHHHHHH
T ss_pred             cchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHH-cCcHHHHHH
Confidence            67888888887766666544211     122222        4556667778888778888999999887 445555544


Q ss_pred             hh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          88 FL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        88 ~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      .. ..++|.+++.+.+.+.+|||.|.+++..+..
T Consensus       354 v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~  387 (510)
T 3ul1_B          354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS  387 (510)
T ss_dssp             HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            44 3799999999999999999999999987754

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=94.81  E-value=0.16  Score=44.83  Aligned_cols=100  Identities=9%  Similarity=0.157  Sum_probs=72.8

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHh-----hcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFC-----MVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      .++|.|++...+.+..|+..++..     .-.++.        .++.|..++.+.+......|...|..+. ..+++...
T Consensus       293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~-~~~~~~~~  371 (529)
T 3tpo_A          293 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT-AGRQDQIQ  371 (529)
T ss_dssp             TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHH-TSCHHHHH
T ss_pred             cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHh-cccHHHHH
Confidence            367888888888776666554211     112222        5667777888888878888888998887 44555555


Q ss_pred             hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      ... ..++|.++..+.+.+.+||+.|++++-.+..
T Consensus       372 ~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~  406 (529)
T 3tpo_A          372 QVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS  406 (529)
T ss_dssp             HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            444 3699999999999999999999999987754

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=94.72  E-value=0.1  Score=46.03  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=73.5

Q ss_pred             hHhhHHHHHHHHhcChhHHHHHHHHHhh-----cChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCc
Q psy6156          17 FLPNIMPALLQAYENQDSCVRKCSVFCM-----VALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKG   83 (176)
Q Consensus        17 ~l~~iL~~LLd~~~d~e~~VrkAav~~~-----v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d   83 (176)
                      ....++|.|.+...+.+.-|+..+.++.     -+.+        .+++.|..++.+.++.....|++.+..++ ..+.+
T Consensus       248 ~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~-~~~~~  326 (529)
T 3tpo_A          248 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV-TGTDE  326 (529)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT-TSCHH
T ss_pred             HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH-ccchH
Confidence            3457889999988877655554432211     1222        25567777888888888899999999987 33433


Q ss_pred             hHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          84 PVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        84 ~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      .....+ ...+|.|...+.+++.+|||.|.+++-.++.
T Consensus       327 ~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~  364 (529)
T 3tpo_A          327 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA  364 (529)
T ss_dssp             HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            333333 4688999999999999999999999987753

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=94.61  E-value=0.17  Score=42.26  Aligned_cols=101  Identities=16%  Similarity=0.144  Sum_probs=72.0

Q ss_pred             hHHHHHHH-HhcChhHHHHHHHHHhh-----cChHH--------HHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCch
Q psy6156          20 NIMPALLQ-AYENQDSCVRKCSVFCM-----VALYK--------VTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKGP   84 (176)
Q Consensus        20 ~iL~~LLd-~~~d~e~~VrkAav~~~-----v~p~~--------~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d~   84 (176)
                      -.+|.|++ ...+.+.-||+.|.++.     -.|..        .++.|..+++++ +......|+..|..++ +..++.
T Consensus        81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~-~~~~~~  159 (296)
T 1xqr_A           81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV-REQEAG  159 (296)
T ss_dssp             THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH-TTCHHH
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH-cCCcHH
Confidence            36788888 88887777777653322     23432        556666677754 5556677889999988 444443


Q ss_pred             HHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          85 VELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        85 l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      ..... ...+|.|.+.+.+.+..|++.|.+++-.++..
T Consensus       160 ~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~  197 (296)
T 1xqr_A          160 LLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG  197 (296)
T ss_dssp             HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            33333 36899999999999999999999999988754

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=94.58  E-value=0.21  Score=41.74  Aligned_cols=101  Identities=11%  Similarity=0.152  Sum_probs=73.3

Q ss_pred             hHHHHHHHHhc-ChhHHHHHHHH---Hhhc---ChH-------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchH
Q psy6156          20 NIMPALLQAYE-NQDSCVRKCSV---FCMV---ALY-------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPV   85 (176)
Q Consensus        20 ~iL~~LLd~~~-d~e~~VrkAav---~~~v---~p~-------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l   85 (176)
                      ..+|.|++... +....+|+.++   ..++   ++.       ..++.|..++++++.....-|...|..+... +++..
T Consensus       124 g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~  202 (296)
T 1xqr_A          124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHK  202 (296)
T ss_dssp             THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHH
Confidence            47888888887 33445555442   2221   221       1566777888888888888999999999855 66655


Q ss_pred             Hhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          86 ELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        86 ~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      .... ..++|.|+..+.+++.+||..|..++-.+...
T Consensus       203 ~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          203 GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            5554 37999999999999999999999998877643

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=94.21  E-value=0.09  Score=49.28  Aligned_cols=99  Identities=13%  Similarity=0.090  Sum_probs=70.2

Q ss_pred             HhhHHHHHHHHhcChhHHHHHHHHHhhc---ChH---HHHHhhhhhhhcc-Cc-chHHHHHHHHHHHHhhcCCchHHhhh
Q psy6156          18 LPNIMPALLQAYENQDSCVRKCSVFCMV---ALY---KVTRILFPLIIAE-EH-PINLVAIKMLTKVIEQNGKGPVELFL   89 (176)
Q Consensus        18 l~~iL~~LLd~~~d~e~~VrkAav~~~v---~p~---~~l~vL~p~l~~~-~~-~~~~~aLkmLtklv~~~~~d~l~~~L   89 (176)
                      ++.+++.++.+.+|.++=||.+|-.+.+   .|+   .++.+|-..+.+- |- ...-..+.+|.+++. .++.  ...-
T Consensus       297 Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s-~p~~--a~~d  373 (800)
T 3oc3_A          297 KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYR-ENPE--LSIP  373 (800)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH-HCTT--CCCC
T ss_pred             HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc-CCcc--cccC
Confidence            7889999999999998888876533332   222   2444444444332 32 445567999999984 4442  2344


Q ss_pred             chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          90 PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        90 ~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      |+++|.|.--++|+-++||+|++.|+-++.
T Consensus       374 p~LVPRL~PFLRHtITSVR~AVL~TL~tfL  403 (800)
T 3oc3_A          374 PERLKDIFPCFTSPVPEVRTSILNMVKNLS  403 (800)
T ss_dssp             SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred             hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence            699999999999999999999999997654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=94.15  E-value=0.16  Score=47.46  Aligned_cols=101  Identities=10%  Similarity=0.096  Sum_probs=71.9

Q ss_pred             hhHHHHHHHHhcChhHHHHHHHHHhh--cC-----------hHHHHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcC-Cc
Q psy6156          19 PNIMPALLQAYENQDSCVRKCSVFCM--VA-----------LYKVTRILFPLIIAE-EHPINLVAIKMLTKVIEQNG-KG   83 (176)
Q Consensus        19 ~~iL~~LLd~~~d~e~~VrkAav~~~--v~-----------p~~~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~-~d   83 (176)
                      ...+|.|+....+.+..||+.|+..+  +.           -..++..|...+.++ +......|...|.++...-. .+
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~  228 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLL  228 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence            45788888888877777777653222  11           124677777777665 66777888899888753211 11


Q ss_pred             hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          84 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        84 ~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      .+..  ...+|.|++...+.+++||+.|+.||..++..
T Consensus       229 ~i~~--~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~  264 (780)
T 2z6g_A          229 AIFK--SGGIPALVNMLGSPVDSVLFHAITTLHNLLLH  264 (780)
T ss_dssp             HHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence            2222  37899999999999999999999999999865

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=93.82  E-value=0.37  Score=46.08  Aligned_cols=118  Identities=14%  Similarity=0.169  Sum_probs=79.6

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHH------HHhhcC------------hH--HHHHhhhhhhhccCcchHHHHHHHHHH
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCS------VFCMVA------------LY--KVTRILFPLIIAEEHPINLVAIKMLTK   75 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~------------p~--~~l~vL~p~l~~~~~~~~~~aLkmLtk   75 (176)
                      +++..+++.++++..|....|+.+|      ++....            |+  .++..|..+++.-+...+...++.+..
T Consensus       536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~  615 (1049)
T 3m1i_C          536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI  615 (1049)
T ss_dssp             HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            6899999999999998777777654      111111            22  355555555555455556778899999


Q ss_pred             HHhhcCC-chHHhhhchHHHHHHHhhcCC------------ChhHHHHH---HHHHHHHHHHhcCCccccccccC
Q psy6156          76 VIEQNGK-GPVELFLPNIMPALLQAYENQ------------DSCVRKCS---VFCMVALYKEFGESVLSPYINKL  134 (176)
Q Consensus        76 lv~~~~~-d~l~~~L~~iiP~l~~a~~~~------------~s~VRKaa---VfClVal~~~lGe~~l~P~L~~L  134 (176)
                      ++...+. +...+.+..++|.+.+.++..            .++..++.   ..|+..++..+|+. +.|++...
T Consensus       616 ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~-f~p~~~~i  689 (1049)
T 3m1i_C          616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGAD-FYPQLGHI  689 (1049)
T ss_dssp             HHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGG-GHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHH
Confidence            9977763 567888899998877655411            22333432   45889999999988 88887643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=93.77  E-value=0.17  Score=49.43  Aligned_cols=133  Identities=15%  Similarity=0.244  Sum_probs=82.6

Q ss_pred             hHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhhc---------ChHHHHHhhhhhhhccCcchHHHHHHHH
Q psy6156           3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMV---------ALYKVTRILFPLIIAEEHPINLVAIKML   73 (176)
Q Consensus         3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~v---------~p~~~l~vL~p~l~~~~~~~~~~aLkmL   73 (176)
                      .++++.. ++.+...+..++|-+-+++-|.+.-|.+|+.-++.         +.+..++.|..-+.+-  ..--.+++.|
T Consensus       159 ~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p--~~~~~~~~~l  235 (986)
T 2iw3_A          159 SAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP--TEVPETVHLL  235 (986)
T ss_dssp             HHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT--THHHHHHHHH
T ss_pred             HHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh--hhhHHHHHHh
Confidence            4455555 46677888888888888888888777776532221         2223344443333321  1111233333


Q ss_pred             HHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC-ccccccccCcHHHHH
Q psy6156          74 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES-VLSPYINKLSGAKLK  140 (176)
Q Consensus        74 tklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~-~l~P~L~~L~~~k~k  140 (176)
                      ....  .=.+--.+.|.-+.|-|.++++..+.++..-++--.=.||..+.++ +..|||+.|=|+=.|
T Consensus       236 ~~~t--fv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~  301 (986)
T 2iw3_A          236 GATT--FVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKS  301 (986)
T ss_dssp             TTCC--CCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHH
T ss_pred             hcCe--eEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHH
Confidence            3321  1112235568889999999999877777544444455699999997 899999998887554

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=93.63  E-value=0.18  Score=44.33  Aligned_cols=102  Identities=17%  Similarity=0.257  Sum_probs=72.4

Q ss_pred             hHhhHHHHHHHHhcChhHHHHHHHHHh---h--cChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCc
Q psy6156          17 FLPNIMPALLQAYENQDSCVRKCSVFC---M--VALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKG   83 (176)
Q Consensus        17 ~l~~iL~~LLd~~~d~e~~VrkAav~~---~--v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d   83 (176)
                      ....++|.|.+...+.+.-|+..+..+   +  -+.+.        .++.|..++.+.+++....+++.+..++ ..+.+
T Consensus       229 ~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~-~~~~~  307 (510)
T 3ul1_B          229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV-TGTDE  307 (510)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT-TSCHH
T ss_pred             HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhh-cCCHH
Confidence            345788999998887765555443211   1  12221        4567777888889999999999999987 44444


Q ss_pred             hHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          84 PVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        84 ~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      .....+ ...+|.|...+.+++.+|||.|.+++-.+.
T Consensus       308 ~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~  344 (510)
T 3ul1_B          308 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT  344 (510)
T ss_dssp             HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            443333 468888999999999999999999998775

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=93.22  E-value=0.41  Score=44.97  Aligned_cols=115  Identities=10%  Similarity=0.106  Sum_probs=82.3

Q ss_pred             hchHhhHHHHHHHHhc--ChhHHHHHHHHHhh------cC--h---HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156          15 ELFLPNIMPALLQAYE--NQDSCVRKCSVFCM------VA--L---YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNG   81 (176)
Q Consensus        15 e~~l~~iL~~LLd~~~--d~e~~VrkAav~~~------v~--p---~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~   81 (176)
                      .++++.+++ ++-...  |....||.++....      +.  |   ..+++.|...++   .+....|...+.++++. .
T Consensus       500 ~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~-~  574 (971)
T 2x1g_F          500 KRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRD-C  574 (971)
T ss_dssp             -CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHH-C
T ss_pred             hHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHH-H
Confidence            456666666 333333  45678888763321      11  2   235666666662   56777888888899855 4


Q ss_pred             CchHHhhhchHHHHHHHhhcC--CChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156          82 KGPVELFLPNIMPALLQAYEN--QDSCVRKCSVFCMVALYKEFGESVLSPYINKL  134 (176)
Q Consensus        82 ~d~l~~~L~~iiP~l~~a~~~--~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L  134 (176)
                      .+.+.++++.++..+.+.+++  .+.+++-.+..|+..+...++.++..||+..|
T Consensus       575 ~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~l  629 (971)
T 2x1g_F          575 QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDII  629 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            567889999999999999998  57899999999999999888856688888654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=93.18  E-value=0.34  Score=45.31  Aligned_cols=68  Identities=18%  Similarity=0.298  Sum_probs=54.5

Q ss_pred             CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156          62 EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL  134 (176)
Q Consensus        62 ~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L  134 (176)
                      .......++.++.++.+-.....  ..++.++|.+..++++  +.||.+|..++..++...++. +.||++.+
T Consensus       502 ~~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~-l~p~~~~i  569 (963)
T 2x19_B          502 NVQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYD-LPPYAANI  569 (963)
T ss_dssp             SHHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGG-CTTTHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHH-HHhhHHHH
Confidence            44456678888888775443332  6799999999999987  899999999999999988877 99998754

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=92.98  E-value=0.12  Score=49.00  Aligned_cols=86  Identities=16%  Similarity=0.143  Sum_probs=64.2

Q ss_pred             Hhhhhhhhcc---CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhc-----
Q psy6156          52 RILFPLIIAE---EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFG-----  123 (176)
Q Consensus        52 ~vL~p~l~~~---~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lG-----  123 (176)
                      +.+.|.+++.   ....+..|++.+.++.+.+.+    +.+..++|.+.++++|++.-||.+|.+++..++....     
T Consensus       458 ~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~----~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~  533 (960)
T 1wa5_C          458 KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK----AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP  533 (960)
T ss_dssp             HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH----HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred             HHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccc
Confidence            4567777765   344566899999999877643    4689999999999999999999999999998886432     


Q ss_pred             -----CCccccccccCcHHHHHH
Q psy6156         124 -----ESVLSPYINKLSGAKLKL  141 (176)
Q Consensus       124 -----e~~l~P~L~~L~~~k~kL  141 (176)
                           .+.+.||++.+=..=.++
T Consensus       534 ~~~~~~~~l~p~l~~ll~~L~~l  556 (960)
T 1wa5_C          534 AFIFHKEDISNSTEILLKNLIAL  556 (960)
T ss_dssp             CBSSCGGGTTTTHHHHHHHHHHH
T ss_pred             cccccHHHhhhhHHHHHHHHHHH
Confidence                 234888887554433333

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=92.80  E-value=0.82  Score=37.74  Aligned_cols=65  Identities=6%  Similarity=0.202  Sum_probs=27.4

Q ss_pred             CCCchhchHhhHHHHHH---HHhcChhHHHHHHHHHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHH
Q psy6156          10 GKGPVELFLPNIMPALL---QAYENQDSCVRKCSVFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKV   76 (176)
Q Consensus        10 ~~~~~e~~l~~iL~~LL---d~~~d~e~~VrkAav~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtkl   76 (176)
                      |...+++|+..++..+.   +.+++-++..+.  ++...+.+.++.....+.++..+.....|.+++++.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~gf~~~~~~a~~--~~~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~   98 (240)
T 3l9t_A           31 GRGSMKQYVARLEKDFSLIEHGFKEEEQRALT--DYKSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL   98 (240)
T ss_dssp             ---CHHHHHHHHHHHHTC-----CHHHHHHHH--HHHHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHhhcccHHHHHHHHH--HHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc
Confidence            44445555555544443   233333333332  444444455555444444444444555555544443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=92.23  E-value=1.1  Score=41.80  Aligned_cols=130  Identities=11%  Similarity=0.163  Sum_probs=79.6

Q ss_pred             hHHHHHhCCCchhchHhhHHHHHHHHhcC--hhHHHHHH------HHHhhcChHHHHH---hhh-hh---hh----cc-C
Q psy6156           3 TKVIEQNGKGPVELFLPNIMPALLQAYEN--QDSCVRKC------SVFCMVALYKVTR---ILF-PL---II----AE-E   62 (176)
Q Consensus         3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d--~e~~VrkA------av~~~v~p~~~l~---vL~-p~---l~----~~-~   62 (176)
                      .++.+..+ +.+.||++.++..+.+....  .+.-.+..      .++...+++...+   .+. |+   ++    .. +
T Consensus       552 ~~l~~~~~-~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~  630 (963)
T 2x19_B          552 KKICRECK-YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPN  630 (963)
T ss_dssp             HHHHHHTG-GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSC
T ss_pred             HHHHHHHH-HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            34566555 44889999999998887763  12222222      1333344343222   222 22   21    11 1


Q ss_pred             c---chHHHHHHHHHHHHhhcCC---------------------chHHhhhchHHHHHHHhhc--CCChhHHHHHHHHHH
Q psy6156          63 H---PINLVAIKMLTKVIEQNGK---------------------GPVELFLPNIMPALLQAYE--NQDSCVRKCSVFCMV  116 (176)
Q Consensus        63 ~---~~~~~aLkmLtklv~~~~~---------------------d~l~~~L~~iiP~l~~a~~--~~~s~VRKaaVfClV  116 (176)
                      .   ......+.+++.+++..+.                     +........++|.+.+.+.  ..+++|...+-.++-
T Consensus       631 ~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~  710 (963)
T 2x19_B          631 PSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFE  710 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence            1   1222467777777766542                     3466678888998776653  346799999999999


Q ss_pred             HHHHHhcCCccccccccC
Q psy6156         117 ALYKEFGESVLSPYINKL  134 (176)
Q Consensus       117 al~~~lGe~~l~P~L~~L  134 (176)
                      ++...+|+. +.||++.+
T Consensus       711 ~~~~~~~~~-~~~~l~~~  727 (963)
T 2x19_B          711 KSVKTLLDD-FAPMVPQL  727 (963)
T ss_dssp             HHHHHSSST-TGGGHHHH
T ss_pred             HHHHhhccc-ccccHHHH
Confidence            999999998 89998754

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=92.12  E-value=0.64  Score=39.69  Aligned_cols=102  Identities=10%  Similarity=0.129  Sum_probs=68.9

Q ss_pred             HhhHHHHHHHHhcChhHHHHHHHHHhh--c--C---------hHHHHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCc
Q psy6156          18 LPNIMPALLQAYENQDSCVRKCSVFCM--V--A---------LYKVTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKG   83 (176)
Q Consensus        18 l~~iL~~LLd~~~d~e~~VrkAav~~~--v--~---------p~~~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d   83 (176)
                      -...+|.|++...+.+..+|..++...  +  .         -...+..|...+.++ ++.....|...|.++...  .+
T Consensus        15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~   92 (529)
T 1jdh_A           15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--RE   92 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HH
T ss_pred             hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--ch
Confidence            345688888888877777776542211  1  1         113555666666655 777888888888887632  22


Q ss_pred             hHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          84 PVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        84 ~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      ...... ...+|.|++.+.+..++|+..|+.++..++..
T Consensus        93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  131 (529)
T 1jdh_A           93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH  131 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            111111 36899999999999999999999999998765

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=91.82  E-value=0.81  Score=44.19  Aligned_cols=70  Identities=9%  Similarity=-0.005  Sum_probs=53.8

Q ss_pred             HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q psy6156          49 KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF  122 (176)
Q Consensus        49 ~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~l  122 (176)
                      .++.+|....+.........+|+++..++.-++...+.+  +.+++.+.+..++  +++|.+|+.|+.++..+-
T Consensus       193 ~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~--~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~  262 (980)
T 3ibv_A          193 FVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN--EPCMNLLYSFLQI--EELRCAACETMTEIVNKK  262 (980)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC--HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc--chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcC
Confidence            355555555443444556689999999997667666654  7899999999987  899999999999998863

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=91.65  E-value=0.58  Score=44.66  Aligned_cols=114  Identities=11%  Similarity=0.109  Sum_probs=79.9

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHh--hc--Ch---------HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFC--MV--AL---------YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~--~v--~p---------~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      -.+|.|.+...+....|+++|..+  .+  .+         ...++.|..++.+.+..+...|...|..+.. .+++...
T Consensus       623 G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~-~s~~~~~  701 (810)
T 3now_A          623 QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS-VSVKCCE  701 (810)
T ss_dssp             THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCHHHHH
Confidence            357888888887777777765221  11  11         1266777788888888888887777777773 2445555


Q ss_pred             hhhc--hHHHHHHHhhcCCChhHHHHHHHHHHHHHH-------HhcCCccccccccC
Q psy6156          87 LFLP--NIMPALLQAYENQDSCVRKCSVFCMVALYK-------EFGESVLSPYINKL  134 (176)
Q Consensus        87 ~~L~--~iiP~l~~a~~~~~s~VRKaaVfClVal~~-------~lGe~~l~P~L~~L  134 (176)
                      ..+.  ..+|.|++-..+.+.++|+.|++|+..+..       .+.+.+.-|.|-.|
T Consensus       702 ~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~L  758 (810)
T 3now_A          702 KILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGL  758 (810)
T ss_dssp             HHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            5554  799999999999999999999999977653       34444455555555

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=91.43  E-value=0.44  Score=43.50  Aligned_cols=105  Identities=9%  Similarity=0.054  Sum_probs=75.2

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHHH---HhhcChHHHHHhhhh----hh--hccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCSV---FCMVALYKVTRILFP----LI--IAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAav---~~~v~p~~~l~vL~p----~l--~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      +.+..++..+..-+.|.++.+|-.|+   .....|+ ..+.+.|    .+  .+.++-..-.|+-.+.+++ +..+|.+.
T Consensus       107 e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e-~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~-~~~p~~~~  184 (621)
T 2vgl_A          107 ELIRLINNAIKNDLASRNPTFMGLALHCIANVGSRE-MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLY-RTSPDLVP  184 (621)
T ss_dssp             HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH-HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHH-HHCGGGCC
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HhChhhcC
Confidence            44566777777777888888887763   3334444 3333333    45  5566777778888899999 46666553


Q ss_pred             hhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC
Q psy6156          87 LFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE  124 (176)
Q Consensus        87 ~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe  124 (176)
                      .  +++++.+.+.++|.++.|.-+|+..+-+++..=++
T Consensus       185 ~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~  220 (621)
T 2vgl_A          185 M--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE  220 (621)
T ss_dssp             C--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             c--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence            2  58999999999999999999999988888765433

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=90.45  E-value=0.39  Score=46.41  Aligned_cols=81  Identities=12%  Similarity=0.217  Sum_probs=60.7

Q ss_pred             HHHhhhhhhh-----ccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHH--hhcCCChhHHHHHHHHHHHHHHHh
Q psy6156          50 VTRILFPLII-----AEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQ--AYENQDSCVRKCSVFCMVALYKEF  122 (176)
Q Consensus        50 ~l~vL~p~l~-----~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~--a~~~~~s~VRKaaVfClVal~~~l  122 (176)
                      .+..+..+++     .........++..+.++.+=.....  +.++.+++.+..  +++|++..||.+|.+.+..+|...
T Consensus       491 l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~--~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~  568 (980)
T 3ibv_A          491 LSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES--AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI  568 (980)
T ss_dssp             HHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC--TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence            4555555554     2234455677888888654443332  578888999999  999999999999999999999999


Q ss_pred             cCCcccccccc
Q psy6156         123 GESVLSPYINK  133 (176)
Q Consensus       123 Ge~~l~P~L~~  133 (176)
                      +.. +.||++.
T Consensus       569 ~~~-L~~~~~~  578 (980)
T 3ibv_A          569 KKQ-VVNYTES  578 (980)
T ss_dssp             TTT-CSSSHHH
T ss_pred             hHH-hhhHHHH
Confidence            987 9998854

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=90.10  E-value=0.77  Score=42.82  Aligned_cols=67  Identities=10%  Similarity=0.144  Sum_probs=51.0

Q ss_pred             HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhch--HHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPN--IMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~--iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      +++.|..++.+....+...|...|..+...   .+....+.+  .+|.|.+..+|.+.+||+.|..++-.+.
T Consensus       594 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~---~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~  662 (780)
T 2z6g_A          594 TIPLFVQLLYSPIENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  662 (780)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHHTS---HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            567777788888777888888888887622   334444443  7899999999999999999888876654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=90.05  E-value=1.4  Score=39.47  Aligned_cols=100  Identities=10%  Similarity=0.115  Sum_probs=67.0

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHh-----hcC--------hHHHHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCchH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFC-----MVA--------LYKVTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKGPV   85 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~-----~v~--------p~~~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d~l   85 (176)
                      -.+|.|+....+.+..+|..+...     .-.        -..++..|...+.++ +......|...|..+...  .+..
T Consensus        14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~   91 (644)
T 2z6h_A           14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGL   91 (644)
T ss_dssp             TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhH
Confidence            467777777777776677654111     111        123566677777765 455666788877776532  2222


Q ss_pred             Hhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          86 ELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        86 ~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      .... ...+|.|++.+.+..++||+.|+.++..+...
T Consensus        92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~  128 (644)
T 2z6h_A           92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH  128 (644)
T ss_dssp             HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhC
Confidence            2221 36899999999999999999999999998764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=89.35  E-value=0.56  Score=37.77  Aligned_cols=72  Identities=13%  Similarity=0.057  Sum_probs=55.4

Q ss_pred             hhhhhhccCcchHHHHHHHHHHHHhhcCC----chHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          54 LFPLIIAEEHPINLVAIKMLTKVIEQNGK----GPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        54 L~p~l~~~~~~~~~~aLkmLtklv~~~~~----d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      |..-+.+++|+....|+.-+.++++....    |+....+..+.+.+...+.|++..|...+..|+-++...+|..
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~   89 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS   89 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence            34568899999999999999999976544    3444457788999999999999999999999998887666554

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=89.26  E-value=0.78  Score=41.54  Aligned_cols=99  Identities=12%  Similarity=0.074  Sum_probs=72.7

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHHH---HhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCSV---FCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL   89 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAav---~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L   89 (176)
                      +....++..+..-..|.++.+|-.|+   ...-.++-   ++..+...+++.+.-..-.|+..+.++.. ..++.+    
T Consensus       103 e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~-~~p~~v----  177 (618)
T 1w63_A          103 DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR-KVPELM----  177 (618)
T ss_dssp             HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-HCGGGG----
T ss_pred             HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HChHHH----
Confidence            34556777888888888888887652   22233321   35555556778888888899999999994 566544    


Q ss_pred             chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          90 PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        90 ~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      ..++|.+.+..+|.++.|+-+|+..+-.++
T Consensus       178 ~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~  207 (618)
T 1w63_A          178 EMFLPATKNLLNEKNHGVLHTSVVLLTEMC  207 (618)
T ss_dssp             GGGGGGTTTSTTCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCHhHHHHHHHHHHHHH
Confidence            477888888999999999999998888765

>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}

Probab=89.07  E-value=2.5  Score=30.71  Aligned_cols=66  Identities=14%  Similarity=0.138  Sum_probs=51.3

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHHHHhhcCh---HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcC
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCSVFCMVAL---YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNG   81 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAav~~~v~p---~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~   81 (176)
                      .+++..+...|+...+..+.+..++.+++-..   ..+..++...+.....+.++..|=++..++....
T Consensus         4 ~~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~   72 (132)
T 4flb_A            4 GALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCK   72 (132)
T ss_dssp             HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhc
Confidence            45677788888888888899999887766433   3477888888888888888999988888886543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=88.69  E-value=1.8  Score=42.04  Aligned_cols=130  Identities=15%  Similarity=0.134  Sum_probs=83.3

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHH------HHhh-----c-------ChH--HHHHhhhhhhhccCcchHHHHHHHHHH
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCS------VFCM-----V-------ALY--KVTRILFPLIIAEEHPINLVAIKMLTK   75 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~-----v-------~p~--~~l~vL~p~l~~~~~~~~~~aLkmLtk   75 (176)
                      .+|.+++.+|++.+.|..+-|..+|      +...     +       .|+  .++..+...+..-+......+...+..
T Consensus       536 ~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~  615 (1023)
T 4hat_C          536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI  615 (1023)
T ss_dssp             HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            5799999999999976654444443      1110     1       122  244444555554456666789999999


Q ss_pred             HHhhcCCch-HHhhhchHHHHHHHhhcCCC------------hhHHHH---HHHHHHHHHHHhcCCccccccccCcHHHH
Q psy6156          76 VIEQNGKGP-VELFLPNIMPALLQAYENQD------------SCVRKC---SVFCMVALYKEFGESVLSPYINKLSGAKL  139 (176)
Q Consensus        76 lv~~~~~d~-l~~~L~~iiP~l~~a~~~~~------------s~VRKa---aVfClVal~~~lGe~~l~P~L~~L~~~k~  139 (176)
                      +++..+.++ ....+..++|.+.+.++.-.            ++..|.   ...|++.++..+|.. +.|++...-+.=+
T Consensus       616 vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~-f~~~~~~i~~~~l  694 (1023)
T 4hat_C          616 IISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGAD-FYPQLGHIYYNML  694 (1023)
T ss_dssp             HHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHH
T ss_pred             HHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHH-HHHHHHHHHHHHH
Confidence            998888666 56677888887776664422            122332   356889999999998 7777765544444


Q ss_pred             HHHHHHH
Q psy6156         140 KLLQLYI  146 (176)
Q Consensus       140 kLl~iYi  146 (176)
                      ++.+.|-
T Consensus       695 ~~y~~~s  701 (1023)
T 4hat_C          695 QLYRAVS  701 (1023)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444553

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.27  E-value=1.4  Score=43.04  Aligned_cols=118  Identities=16%  Similarity=0.195  Sum_probs=75.7

Q ss_pred             HHHHHHHh-cChhHHHHHHHHHh-----hcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHH
Q psy6156          22 MPALLQAY-ENQDSCVRKCSVFC-----MVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPA   95 (176)
Q Consensus        22 L~~LLd~~-~d~e~~VrkAav~~-----~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~   95 (176)
                      +.+||+.. .|.++-||++|+..     +=.++.+.+++.-+.++.++-++-+|.-.|.-+.-..+       .++++..
T Consensus       579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~-------~~~aid~  651 (963)
T 4ady_A          579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-------LQSAIDV  651 (963)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-------CHHHHHH
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC-------cHHHHHH
Confidence            44566554 36667788887433     22556677777667777888888888877777652222       2456667


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhc
Q psy6156          96 LLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQ  150 (176)
Q Consensus        96 l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~  150 (176)
                      |....+|+...||.+|++.|=- ...-.++...|.+.   +-.+.|...|-+|.+
T Consensus       652 L~~L~~D~d~~Vrq~Ai~ALG~-Ig~gtnna~~~rva---~~l~~L~~~~~dk~~  702 (963)
T 4ady_A          652 LDPLTKDPVDFVRQAAMIALSM-ILIQQTEKLNPQVA---DINKNFLSVITNKHQ  702 (963)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHH-HSTTCCTTTCTTHH---HHHHHHHHHHHCSSS
T ss_pred             HHHHccCCCHHHHHHHHHHHHH-HhcCCccccchHHH---HHHHHHHHHHhcccc
Confidence            7777899999999999998752 22222333555543   334456677766554

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=87.01  E-value=4  Score=36.51  Aligned_cols=100  Identities=11%  Similarity=0.170  Sum_probs=69.0

Q ss_pred             hHHHHHHHHhcCh-hHHHHHHH--HHhhc--ChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          20 NIMPALLQAYENQ-DSCVRKCS--VFCMV--ALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        20 ~iL~~LLd~~~d~-e~~VrkAa--v~~~v--~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      .+++.|++...+. +.-+++++  .+..+  .++        ..++.|...+++.+......|+..|..+.... .+...
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~  134 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKM  134 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHH
Confidence            5678888887653 33344433  11111  111        26777888888888888889999999998543 33333


Q ss_pred             hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      ... ...+|.|++.+.+.++.++.++..|+-.+..
T Consensus       135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~  169 (644)
T 2z6h_A          135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY  169 (644)
T ss_dssp             HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence            333 6889999999999999999999888877664

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=86.86  E-value=1.2  Score=42.67  Aligned_cols=122  Identities=12%  Similarity=0.096  Sum_probs=81.9

Q ss_pred             chHhhHHHHHHHHhc-----ChhHHHHHHHH--Hhh------cChHH---HHHhhhhhhhccCcchHHHHHHHHHHHHhh
Q psy6156          16 LFLPNIMPALLQAYE-----NQDSCVRKCSV--FCM------VALYK---VTRILFPLIIAEEHPINLVAIKMLTKVIEQ   79 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~-----d~e~~VrkAav--~~~------v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv~~   79 (176)
                      +++..+++.++....     |....|+..+.  +..      -.|..   +++.|...+.+...+....|...+.++++.
T Consensus       491 ~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~  570 (1049)
T 3m1i_C          491 RFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK  570 (1049)
T ss_dssp             HHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            356677777766432     34455553221  111      13332   555555566666778888899999999976


Q ss_pred             cCCchH-------HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcC-CccccccccCcHH
Q psy6156          80 NGKGPV-------ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGE-SVLSPYINKLSGA  137 (176)
Q Consensus        80 ~~~d~l-------~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe-~~l~P~L~~L~~~  137 (176)
                      ....-+       .+++++++..+...++..+.+-.-....|+..+....|+ +...||+..|-+-
T Consensus       571 ~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~  636 (1049)
T 3m1i_C          571 CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL  636 (1049)
T ss_dssp             HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred             HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            543322       378899999999999988888888888899988888885 4578888765443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=86.71  E-value=3.7  Score=34.84  Aligned_cols=69  Identities=10%  Similarity=0.108  Sum_probs=52.7

Q ss_pred             HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      .++.|...+++.+......|+..|..+... +.+.-.... ...+|.+++.+.+.+.++|..+..|+-.+.
T Consensus       102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la  171 (529)
T 1jdh_A          102 GIPALVKMLGSPVDSVLFYAITTLHNLLLH-QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA  171 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            666777788888877888899999999844 222222222 578999999999999999999988887554

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=84.49  E-value=1  Score=44.19  Aligned_cols=78  Identities=14%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             CcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcC------------CChhHHHHHHHHHHHHHHHhcCCcccc
Q psy6156          62 EHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYEN------------QDSCVRKCSVFCMVALYKEFGESVLSP  129 (176)
Q Consensus        62 ~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~------------~~s~VRKaaVfClVal~~~lGe~~l~P  129 (176)
                      +......++.++.++.+-....  .+.|+.++..+..++.+            ...+||.+|-.|+..+|...++. +.|
T Consensus       545 ~p~l~~~~i~~l~~l~~~~~~~--p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~-L~p  621 (1204)
T 3a6p_A          545 DPLILSCVLTNVSALFPFVTYR--PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQL-VLP  621 (1204)
T ss_dssp             CHHHHHHHHHHHHHHGGGGGTC--GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHH-HGG
T ss_pred             ChHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHH-HHH
Confidence            4445557888877765433321  23556666666666655            34589999999999999999998 999


Q ss_pred             ccccCcHHHHHHH
Q psy6156         130 YINKLSGAKLKLL  142 (176)
Q Consensus       130 ~L~~L~~~k~kLl  142 (176)
                      |++.|-..-..++
T Consensus       622 ~~~~i~~~~~~~l  634 (1204)
T 3a6p_A          622 NFDMLYNHVKQLL  634 (1204)
T ss_dssp             GHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9986555444333

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=84.12  E-value=2.6  Score=40.99  Aligned_cols=124  Identities=12%  Similarity=0.112  Sum_probs=83.4

Q ss_pred             hhchHhhHHHHHHHHhc-----ChhHHHHHHHH--------HhhcChHH---HHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156          14 VELFLPNIMPALLQAYE-----NQDSCVRKCSV--------FCMVALYK---VTRILFPLIIAEEHPINLVAIKMLTKVI   77 (176)
Q Consensus        14 ~e~~l~~iL~~LLd~~~-----d~e~~VrkAav--------~~~v~p~~---~l~vL~p~l~~~~~~~~~~aLkmLtklv   77 (176)
                      ..+++..+++.|++...     |....||..+.        +..-+|+.   ++..|...+.+.....-..|...+.+++
T Consensus       489 e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~  568 (1023)
T 4hat_C          489 EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIV  568 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence            45788889999998876     35566776541        11234443   4444444554444446667888888888


Q ss_pred             hhcCCc-------hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCc-cccccccCcHH
Q psy6156          78 EQNGKG-------PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESV-LSPYINKLSGA  137 (176)
Q Consensus        78 ~~~~~d-------~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~-l~P~L~~L~~~  137 (176)
                      +.....       +..+++++++..+.++.++-+++-+-.+..++-.+-..+|++. ...+++.|-+-
T Consensus       569 ~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~  636 (1023)
T 4hat_C          569 QKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL  636 (1023)
T ss_dssp             HHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHH
T ss_pred             HHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHh
Confidence            765543       2346888899889999888888888888888888888888664 34455554443

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=84.02  E-value=2.6  Score=33.57  Aligned_cols=118  Identities=19%  Similarity=0.333  Sum_probs=74.6

Q ss_pred             hhchHhhHHHHHHHHhcChhHHHHHHHHHh---hcChHHHHHhhhhhhhc------cCcchHHHHHHHHHHHHhhcCCch
Q psy6156          14 VELFLPNIMPALLQAYENQDSCVRKCSVFC---MVALYKVTRILFPLIIA------EEHPINLVAIKMLTKVIEQNGKGP   84 (176)
Q Consensus        14 ~e~~l~~iL~~LLd~~~d~e~~VrkAav~~---~v~p~~~l~vL~p~l~~------~~~~~~~~aLkmLtklv~~~~~d~   84 (176)
                      .+.||+.+...++.       ..|++|+..   --..++.++.+..++.+      .++......++|...++ ..+.=.
T Consensus         9 lq~yf~~It~a~~~-------~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl-~N~~l~   80 (196)
T 4atg_A            9 LQLYFDKILSMIKS-------DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLI-KNKHVF   80 (196)
T ss_dssp             HHHHHHHHHHHHTS-------TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HCTTCC
T ss_pred             HHHHHHHHHHHHHh-------HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH-cCCCCC
Confidence            55666666655554       246655332   12334455555544422      25666667788888888 555557


Q ss_pred             HHhhhchHHHHHHHhhcCC---ChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHh
Q psy6156          85 VELFLPNIMPALLQAYENQ---DSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIK  147 (176)
Q Consensus        85 l~~~L~~iiP~l~~a~~~~---~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~  147 (176)
                      ++..+-.++|.+..+.=..   ...+|.-|-..+..+|...|+.    |    +.-|.|+.+.|.+
T Consensus        81 lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~----y----~~L~~RI~~tl~k  138 (196)
T 4atg_A           81 IDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRS----Y----KTLAPRVLKTLKG  138 (196)
T ss_dssp             CGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTT----S----TTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCcc----C----chHHHHHHHHHHH
Confidence            7788888888777665211   1179999999999999999985    1    3334566666655

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=83.81  E-value=5.5  Score=32.73  Aligned_cols=106  Identities=13%  Similarity=0.113  Sum_probs=68.8

Q ss_pred             HHHHHHH-HHhhcChH---HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHH
Q psy6156          34 SCVRKCS-VFCMVALY---KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRK  109 (176)
Q Consensus        34 ~~VrkAa-v~~~v~p~---~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRK  109 (176)
                      +.+++|- ++..-.|.   .+++-+.++..+...+...-....+.+.+..-     ...++..++.|..-++|.++.|-|
T Consensus        34 ~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-----~~l~~~~l~~L~~Ll~d~d~~V~K  108 (257)
T 3gs3_A           34 ELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-----VELLPHVINVVSMLLRDNSAQVIK  108 (257)
T ss_dssp             HHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCCHHHHH
Confidence            4444443 33333454   46777777655555556666777777777331     247889999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCC-----c----cccccccCcHHHHHHHHH
Q psy6156         110 CSVFCMVALYKEFGES-----V----LSPYINKLSGAKLKLLQL  144 (176)
Q Consensus       110 aaVfClVal~~~lGe~-----~----l~P~L~~L~~~k~kLl~i  144 (176)
                      .++.|+..+|..+=+.     .    ...--..++.-|-+.++.
T Consensus       109 ~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~  152 (257)
T 3gs3_A          109 RVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDM  152 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999765332     1    122234555556555555

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=83.57  E-value=1.2  Score=41.97  Aligned_cols=88  Identities=11%  Similarity=0.103  Sum_probs=60.6

Q ss_pred             HHHHhcCh-----hHHHHHHH-----HHhhcChH-HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHH
Q psy6156          25 LLQAYENQ-----DSCVRKCS-----VFCMVALY-KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIM   93 (176)
Q Consensus        25 LLd~~~d~-----e~~VrkAa-----v~~~v~p~-~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~ii   93 (176)
                      .+|.++|-     -..||+++     .+..++++ .++..|...+....|+..++++-.|.-+     .|-+.. ++.++
T Consensus       228 ALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~-Ld~Vv  301 (800)
T 3oc3_A          228 VTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVED-KDGLC  301 (800)
T ss_dssp             HHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCC-HHHHH
T ss_pred             HhccccccccCeeeeehHHHHHHHHHHHHhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHH-HHHHH
Confidence            35667662     26788863     12445444 2444444444777899999887777655     333322 89999


Q ss_pred             HHHHHhhcCCChhHHHHHHHHHHHH
Q psy6156          94 PALLQAYENQDSCVRKCSVFCMVAL  118 (176)
Q Consensus        94 P~l~~a~~~~~s~VRKaaVfClVal  118 (176)
                      |.+..+..|..-+||-.|--+++-+
T Consensus       302 ~aVL~GL~D~DDDVRAVAAetLiPI  326 (800)
T 3oc3_A          302 RKLVSLLSSPDEDIKLLSAELLCHF  326 (800)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHTTS
T ss_pred             HHHHhhcCCcccHHHHHHHHHhhhh
Confidence            9999999999999999998887644

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=83.23  E-value=5.1  Score=39.30  Aligned_cols=126  Identities=13%  Similarity=0.128  Sum_probs=81.6

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHHHHhh-----------cC-------h--HHHHHhhhhhhhccCcchHHHHHHHHHH
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCSVFCM-----------VA-------L--YKVTRILFPLIIAEEHPINLVAIKMLTK   75 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAav~~~-----------v~-------p--~~~l~vL~p~l~~~~~~~~~~aLkmLtk   75 (176)
                      .||+.++.+|++.+.+..+-|.+||.-+.           +.       |  +.+++.+..+...-+......-.+.+..
T Consensus       562 ~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~  641 (1073)
T 3gjx_A          562 KFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGY  641 (1073)
T ss_dssp             HHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            58999999999999988777777651111           11       1  1233333333333344455567888889


Q ss_pred             HHhhcCCch-HHhhhchHHHHHHHhhcCCC------------hh-HHH--HHHHHHHHHHHHhcCCccccccccCcHHHH
Q psy6156          76 VIEQNGKGP-VELFLPNIMPALLQAYENQD------------SC-VRK--CSVFCMVALYKEFGESVLSPYINKLSGAKL  139 (176)
Q Consensus        76 lv~~~~~d~-l~~~L~~iiP~l~~a~~~~~------------s~-VRK--aaVfClVal~~~lGe~~l~P~L~~L~~~k~  139 (176)
                      ++...+.+. ....+..+||...+.++.-.            ++ ++.  ....|.+++|..+|.. +.|++...-+   
T Consensus       642 vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~-f~~~~~~i~~---  717 (1073)
T 3gjx_A          642 MIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHP-FVIQLGRIYL---  717 (1073)
T ss_dssp             HHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHH---
T ss_pred             HHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchh-HHHHHHHHHH---
Confidence            998888766 46677888888777665422            22 222  2345889999999998 7777766544   


Q ss_pred             HHHHHH
Q psy6156         140 KLLQLY  145 (176)
Q Consensus       140 kLl~iY  145 (176)
                      .++++|
T Consensus       718 ~~l~~y  723 (1073)
T 3gjx_A          718 DMLNVY  723 (1073)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            456666

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=83.18  E-value=4.2  Score=34.50  Aligned_cols=101  Identities=9%  Similarity=0.043  Sum_probs=70.2

Q ss_pred             hHHHHHHHHhcChh-----HHHHHHH--H--Hhh---cChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhh
Q psy6156          20 NIMPALLQAYENQD-----SCVRKCS--V--FCM---VALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQ   79 (176)
Q Consensus        20 ~iL~~LLd~~~d~e-----~~VrkAa--v--~~~---v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~   79 (176)
                      -.+|.|++...+..     ++++.|+  +  ++.   ..++.        .++.|..++.+++......|...|..+. .
T Consensus       214 Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa-~  292 (354)
T 3nmw_A          214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS-A  292 (354)
T ss_dssp             THHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-S
T ss_pred             CcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh-C
Confidence            46777777776432     3455553  1  111   23432        5667777788888888888999999887 3


Q ss_pred             cCCchHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          80 NGKGPVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        80 ~~~d~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      .+++...... ...+|.|++-+++.+..+|+.|...+-.+..-
T Consensus       293 ~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          293 RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            3455544444 36799999999999999999999888877654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=83.10  E-value=3.7  Score=35.43  Aligned_cols=69  Identities=4%  Similarity=0.036  Sum_probs=52.7

Q ss_pred             HHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh-hhchHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          51 TRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL-FLPNIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        51 l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~-~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      ++.|...++++++.....|...|.++.. .+.+.-.. .-...+|.|++.+.+.+++++..|+.++-.|..
T Consensus         4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~   73 (457)
T 1xm9_A            4 IPKAVQYLSSQDEKYQAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF   73 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTS-SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHc-CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            4566677788888888889999999873 23221112 235789999999999999999999999988764

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=82.30  E-value=3.6  Score=40.37  Aligned_cols=45  Identities=13%  Similarity=0.325  Sum_probs=36.9

Q ss_pred             hhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC-------ccccccc
Q psy6156          88 FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES-------VLSPYIN  132 (176)
Q Consensus        88 ~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~-------~l~P~L~  132 (176)
                      .|+.++..+.+.|+++++.|..+|..|+-.+|...++.       +..||+.
T Consensus       563 ~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~  614 (1073)
T 3gjx_A          563 FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFID  614 (1073)
T ss_dssp             HHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHH
Confidence            46667777888899999999999999999999998875       2356764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=81.93  E-value=7.3  Score=33.56  Aligned_cols=105  Identities=8%  Similarity=0.113  Sum_probs=68.1

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHhh----cChH-------HHHHhhhhhhhccCc------chHHHHHHHHHHHHhhcCC
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFCM----VALY-------KVTRILFPLIIAEEH------PINLVAIKMLTKVIEQNGK   82 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~~----v~p~-------~~l~vL~p~l~~~~~------~~~~~aLkmLtklv~~~~~   82 (176)
                      ..+|.|++...+.+.-|++.|.+..    -.++       .+++.|...+..++.      .+...++..+..++ ..+.
T Consensus       331 ~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~-~~~~  409 (457)
T 1xm9_A          331 KGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLM-ASQP  409 (457)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHH-TTCT
T ss_pred             CCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHH-hcCH
Confidence            5788999999887655555432111    1111       255666666766543      24557888888888 4455


Q ss_pred             chHHhhhc-hHHHHHHHhhcCC-ChhHHHHHHHHHHHHHHHhcCCccc
Q psy6156          83 GPVELFLP-NIMPALLQAYENQ-DSCVRKCSVFCMVALYKEFGESVLS  128 (176)
Q Consensus        83 d~l~~~L~-~iiP~l~~a~~~~-~s~VRKaaVfClVal~~~lGe~~l~  128 (176)
                      +....... ..+|.|++-..+. +..++|.|...+   +...+..+++
T Consensus       410 ~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L---~~~~~~~~l~  454 (457)
T 1xm9_A          410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLL---SDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHH---HTTSSSTTCS
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHH---HHHHcchhhh
Confidence            54444443 7899999999999 999999887765   3444555454

>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X

Probab=80.80  E-value=12  Score=27.83  Aligned_cols=127  Identities=13%  Similarity=0.108  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHhcChhHHHHHHHHHhhcC---hHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHH
Q psy6156          19 PNIMPALLQAYENQDSCVRKCSVFCMVA---LYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPA   95 (176)
Q Consensus        19 ~~iL~~LLd~~~d~e~~VrkAav~~~v~---p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~   95 (176)
                      +....+|-+...+.+..+...+.++.-+   ...+..++...+.......++++|=++..+++..+.+-....-+.+.+.
T Consensus        10 ~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~   89 (144)
T 1sz9_A           10 KDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNL   89 (144)
T ss_dssp             HHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHH
T ss_pred             HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            3333333343336677777776665433   2348888888898888889999999999999888776555455666667


Q ss_pred             HHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccCcHHHHHHHHHHHhhhc
Q psy6156          96 LLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKLSGAKLKLLQLYIKRSQ  150 (176)
Q Consensus        96 l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~~k~kLl~iYi~R~~  150 (176)
                      +..+|.....++|+.... ++.++..-....    .+-.++..++=++-+++.++
T Consensus        90 f~~~~~~~d~~~r~k~~r-L~~~W~~~~~~~----~~vF~~~~l~~i~~~l~~a~  139 (144)
T 1sz9_A           90 YKRTYLLVDNTTRTKLIN-MFKLWLNPNDTG----LPLFEGSALEKIEQFLIKAS  139 (144)
T ss_dssp             HHHHHHTSCHHHHHHHHH-HHHHHTSGGGCS----SCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCHHHHHHHHH-HHHHHhCcccCC----CCCCCHHHHHHHHHHHHhhh
Confidence            778888777777765444 333442110000    22345555555555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	176
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-04
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.001
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.003

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 7/138 (5%)

Query: 2    LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKVTR-----ILFP 56
            L ++I       ++ ++ NI   LL+  E  +   R     C+  L  +        L  
Sbjct: 910  LKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKG 969

Query: 57   LIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMV 116
             +I+         +  +   I  + + P++  L N +   L+  E+ D  VR+ ++    
Sbjct: 970  YLISGSSYARSSVVTAVKFTISDHPQ-PIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFN 1028

Query: 117  ALYKEFGESVLSPYINKL 134
            +        ++   ++ +
Sbjct: 1029 SAAHNKPS-LIRDLLDTV 1045

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 15/132 (11%), Positives = 45/132 (34%), Gaps = 13/132 (9%)

Query: 13  PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYK------VTRILFPLIIA----EE 62
            VE F   +    +    +    +R+ +   +  L +          + P ++A      
Sbjct: 434 GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN 493

Query: 63  HPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEF 122
           +   +  +  +  + E  G+   ++   +++P +L+   +  + VR      +  +    
Sbjct: 494 YLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL 550

Query: 123 GESVLSPYINKL 134
             S L   +  +
Sbjct: 551 DNSTLQSEVKPI 562

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 12/121 (9%), Positives = 32/121 (26%), Gaps = 6/121 (4%)

Query: 17  FLPNIMPALLQAYENQDSCVRKCSVFCMVAL------YKVTRILFPLIIAEEHPINLVAI 70
           ++  ++P L      +++ VR  +V  + A+        +     PL+          + 
Sbjct: 84  YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143

Query: 71  KMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPY 130
                +               +         +    VR+ +   +    K      +   
Sbjct: 144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203

Query: 131 I 131
           I
Sbjct: 204 I 204

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.51
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.3
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.98
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.93
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.92
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.77
d1b3ua_	588	Constant regulatory domain of protein phosphatase	97.71
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.64
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.62
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.31
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.19
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.04
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.27
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	96.24
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	96.22
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	95.96
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	95.45
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.34
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.01
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	94.75
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	94.34
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	94.33
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	94.15
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	93.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	93.81
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	91.97
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	89.74
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	89.14
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	86.56
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	84.14

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.6e-08  Score=90.69  Aligned_cols=129  Identities=14%  Similarity=0.209  Sum_probs=111.1

Q ss_pred             hHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHH-----HHhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHH
Q psy6156           3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCS-----VFCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVI   77 (176)
Q Consensus         3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAa-----v~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv   77 (176)
                      .+++++.+.+.+.++.+.+++.|+....+.++.+|.++     -++.+.|...++.|...+++.++....+++..+..++
T Consensus       911 ~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~  990 (1207)
T d1u6gc_         911 KEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTI  990 (1207)
T ss_dssp             HHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGC
T ss_pred             HHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            45777778888899999999999999999888888864     2446788999999999999999999999999999988


Q ss_pred             hhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccccc
Q psy6156          78 EQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINK  133 (176)
Q Consensus        78 ~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~  133 (176)
                      ... .+...+.+..++|.+.+.+.|++.+||++|+.|+-.+...-++- +.||++.
T Consensus       991 ~~~-~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~l-i~~~l~~ 1044 (1207)
T d1u6gc_         991 SDH-PQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSL-IRDLLDT 1044 (1207)
T ss_dssp             CSS-CCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGG-TGGGHHH
T ss_pred             Hhc-chhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHH
Confidence            654 46678899999999999999999999999999999888776666 8999854

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.5e-06  Score=69.99  Aligned_cols=110  Identities=14%  Similarity=0.187  Sum_probs=83.5

Q ss_pred             chHhhHHHHHHHHhcC-------hhHHHHHHH-----HHhhcChHHHHHhhh----hhhhccCcchHHHHHHHHHHHHhh
Q psy6156          16 LFLPNIMPALLQAYEN-------QDSCVRKCS-----VFCMVALYKVTRILF----PLIIAEEHPINLVAIKMLTKVIEQ   79 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d-------~e~~VrkAa-----v~~~v~p~~~l~vL~----p~l~~~~~~~~~~aLkmLtklv~~   79 (176)
                      ..++.++|.+.+...+       .+..+|.++     .+....+..+++.+.    ..+++.+|+...+|+..+..+.+.
T Consensus       316 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~  395 (458)
T d1ibrb_         316 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG  395 (458)
T ss_dssp             HHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            3455566666666542       234566654     222223344454444    456788999999999999999987


Q ss_pred             cCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          80 NGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        80 ~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      ...+.+.+.+++++|.+..+++|+++.||.+|.+|+-.+...+++.
T Consensus       396 ~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~  441 (458)
T d1ibrb_         396 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA  441 (458)
T ss_dssp             SCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred             cCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            7788888999999999999999999999999999999999988876

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=2e-05  Score=67.89  Aligned_cols=130  Identities=15%  Similarity=0.273  Sum_probs=100.2

Q ss_pred             HHHHHhCCCchhchHhhHHHHHHHHhcChh-HHHHHHH------HHhh----cChH--HHHHhhhhhhhccCcchHHHHH
Q psy6156           4 KVIEQNGKGPVELFLPNIMPALLQAYENQD-SCVRKCS------VFCM----VALY--KVTRILFPLIIAEEHPINLVAI   70 (176)
Q Consensus         4 ~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e-~~VrkAa------v~~~----v~p~--~~l~vL~p~l~~~~~~~~~~aL   70 (176)
                      .++++.+ +.+.++.+.+++.++....+.+ ..+|+.+      ++..    +.|+  .+++.|...+++.+++....|+
T Consensus       582 ~~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~  660 (861)
T d2bpta1         582 AVIRKSP-SSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAV  660 (861)
T ss_dssp             HHHHHCG-GGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HHHhcch-hhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHH
Confidence            3444444 4588999999999998887654 4556543      2211    2332  3777788888888999999999


Q ss_pred             HHHHHHHhhcCCchHHhhhchHHHHHHHhhcCC--ChhHHHHHHHHHHHHHHHhcCCccccccccCcH
Q psy6156          71 KMLTKVIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRKCSVFCMVALYKEFGESVLSPYINKLSG  136 (176)
Q Consensus        71 kmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~--~s~VRKaaVfClVal~~~lGe~~l~P~L~~L~~  136 (176)
                      .++..++ +...+.+.+.++++++.+.+.+.+.  ..++|.++..|+-.+...+|+. +.||++.+-+
T Consensus       661 ~~l~~i~-~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~-~~~~l~~~~~  726 (861)
T d2bpta1         661 GFIADIS-NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD-FIPYLNDIMA  726 (861)
T ss_dssp             HHHHHHH-HHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGG-GHHHHHHHHH
T ss_pred             HHHHHHH-HHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            9999988 5556778899999999999999765  4589999999999999999988 9999986543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=6.3e-06  Score=75.43  Aligned_cols=129  Identities=13%  Similarity=0.283  Sum_probs=100.0

Q ss_pred             hhHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHhh------cChH---HHHHhhhhhh-hccCcchHHHHHH
Q psy6156           2 LTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM------VALY---KVTRILFPLI-IAEEHPINLVAIK   71 (176)
Q Consensus         2 ~t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~~------v~p~---~~l~vL~p~l-~~~~~~~~~~aLk   71 (176)
                      +.+++.+.|. .+.++...+++.++....|.+..||++|+.+.      .+..   ..++.+...+ ....+.....++.
T Consensus       155 l~~l~~~~g~-~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         155 MADMLSRQGG-LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHHHHHTCS-SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHHHHhhH-hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            4567777774 48899999999999999999999999874332      2221   2344343333 3445666678899


Q ss_pred             HHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCcccccccc
Q psy6156          72 MLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINK  133 (176)
Q Consensus        72 mLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~  133 (176)
                      ++..+++ ..+..+..++++++|.+.+++++.+.++|.++..++-.+....+++ +.||+..
T Consensus       234 ~l~~l~~-~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~  293 (1207)
T d1u6gc_         234 CIAAISR-QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VYPHVST  293 (1207)
T ss_dssp             HHHHHHH-HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHHHHHH
T ss_pred             HHHHHHH-HcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhh-hhhhHHH
Confidence            9999994 4556788999999999999999999999999999999999999888 8888754

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2e-05  Score=70.82  Aligned_cols=118  Identities=16%  Similarity=0.278  Sum_probs=96.9

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHHHHhh----------cCh--HHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCc
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCSVFCM----------VAL--YKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKG   83 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAav~~~----------v~p--~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d   83 (176)
                      ..++.+++.+.+...+.+--+|+|++++.          +.|  ..+++.|.+.+++.++.....++..+.++.+....+
T Consensus       391 ~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~  470 (888)
T d1qbkb_         391 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ  470 (888)
T ss_dssp             SSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSS
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            45677888888888888888898875431          111  346666777778888888889999999998877777


Q ss_pred             hHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156          84 PVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGESVLSPYINKL  134 (176)
Q Consensus        84 ~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~~l~P~L~~L  134 (176)
                      ....++..++|.+.+.+.|.++.||.+|..++..++...|+. +.||++.+
T Consensus       471 ~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~-l~p~~~~i  520 (888)
T d1qbkb_         471 PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAYI  520 (888)
T ss_dssp             CHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTS-SGGGHHHH
T ss_pred             hhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-hhhHHHHH
Confidence            777899999999999999999999999999999999999988 99998643

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.1e-05  Score=66.77  Aligned_cols=104  Identities=8%  Similarity=0.047  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHhcChhHHHHHHH------HHhhcChHH----HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhh
Q psy6156          19 PNIMPALLQAYENQDSCVRKCS------VFCMVALYK----VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELF   88 (176)
Q Consensus        19 ~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~----~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~   88 (176)
                      +.+.+-++....|....||++|      ++..+.++.    .++.+....++.+|....+++.++..+.+..+.+..   
T Consensus       440 ~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~---  516 (588)
T d1b3ua_         440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT---  516 (588)
T ss_dssp             HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHH---
Confidence            3455666677788888888876      222334443    333444445677888899999999998876665543   


Q ss_pred             hchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          89 LPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        89 L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      ..+++|.+.+..+|+.+.||.++..++-.+...+++.
T Consensus       517 ~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~  553 (588)
T d1b3ua_         517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS  553 (588)
T ss_dssp             HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence            4578999999999999999999999998886665553

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=8.9e-05  Score=62.77  Aligned_cols=107  Identities=13%  Similarity=0.170  Sum_probs=81.9

Q ss_pred             chHhhHHHHHHHHhcChhHHHHHHH------HHhhcChHH----HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchH
Q psy6156          16 LFLPNIMPALLQAYENQDSCVRKCS------VFCMVALYK----VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPV   85 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~e~~VrkAa------v~~~v~p~~----~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l   85 (176)
                      .+.+.++|.+....+|...-||.++      +...+.+..    +++.+...+++.+|....++++.+..+++..+.+..
T Consensus       359 ~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~  438 (588)
T d1b3ua_         359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF  438 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhH
Confidence            4556677888888888777777654      333344444    444444556788999999999999999988877654


Q ss_pred             HhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          86 ELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        86 ~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                         -+.+.|.+...+.|+...||++|..|+..+...+|.+
T Consensus       439 ---~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~  475 (588)
T d1b3ua_         439 ---DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE  475 (588)
T ss_dssp             ---CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH
T ss_pred             ---HHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH
Confidence               3567888889999999999999999999999998875

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=0.00015  Score=62.22  Aligned_cols=130  Identities=18%  Similarity=0.272  Sum_probs=95.6

Q ss_pred             hHHHHHhCCCchhchHhhHHHHHHHHhcChhHHHHHHHHHh------hc----ChH--HHHHhhhhhhhcc--CcchHHH
Q psy6156           3 TKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFC------MV----ALY--KVTRILFPLIIAE--EHPINLV   68 (176)
Q Consensus         3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~e~~VrkAav~~------~v----~p~--~~l~vL~p~l~~~--~~~~~~~   68 (176)
                      ..+++..+ +.+.+|++.++|.|+++..|.+..||.+++..      .+    .|+  ..+..|...+++.  ....+..
T Consensus       623 ~~l~~~~~-~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~  701 (861)
T d2bpta1         623 SALAASLG-KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPA  701 (861)
T ss_dssp             HHHHHHHG-GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHH
T ss_pred             HHHHHHhh-HHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHH
Confidence            45666666 44899999999999999999988888766321      11    222  2555555666554  3456778


Q ss_pred             HHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCC-----------hhHHHHHHHHHHHHHHHhcCC--ccccccccC
Q psy6156          69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD-----------SCVRKCSVFCMVALYKEFGES--VLSPYINKL  134 (176)
Q Consensus        69 aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~-----------s~VRKaaVfClVal~~~lGe~--~l~P~L~~L  134 (176)
                      ++.+++.++...+ +.+.+.++.++|.+.++.+...           .+||+++..|+..+...+++.  .+.||++.+
T Consensus       702 ~~~~l~~i~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i  779 (861)
T d2bpta1         702 VLSVFGDIASNIG-ADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTI  779 (861)
T ss_dssp             HHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999997766 4577899999999999887554           358999999998887776554  588888643

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.62  E-value=0.00018  Score=49.20  Aligned_cols=84  Identities=17%  Similarity=0.199  Sum_probs=68.0

Q ss_pred             HHHHHHHHhcChhHHHHHHHHHhh--cChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHH
Q psy6156          21 IMPALLQAYENQDSCVRKCSVFCM--VALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQ   98 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav~~~--v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~   98 (176)
                      .++.|++..+|.+.-||.+++..+  +.-...++.|...+++.++.....|+..|.++-    .       +..+|.+.+
T Consensus        23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~----~-------~~~~~~L~~   91 (111)
T d1te4a_          23 AFEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIG----G-------ERVRAAMEK   91 (111)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----S-------HHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcchhhhHHHHHhhhccchhHHHHHHHHHHHHhC----c-------cchHHHHHH
Confidence            456678889999888998874433  444568888999999999999999999998762    1       467899999


Q ss_pred             hhcCCChhHHHHHHHHH
Q psy6156          99 AYENQDSCVRKCSVFCM  115 (176)
Q Consensus        99 a~~~~~s~VRKaaVfCl  115 (176)
                      ..+|++++||++|+..|
T Consensus        92 ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          92 LAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HTTSCCTHHHHHHHHHG
T ss_pred             HHcCCCHHHHHHHHHHH
Confidence            99999999999998764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00059  Score=60.96  Aligned_cols=129  Identities=15%  Similarity=0.180  Sum_probs=95.8

Q ss_pred             hHHHHHhCCCchhchHh--hHHHHHHHHhcChhHHHHHHHHH------hhc----ChH--HHHHhhhhhhhccCcchHHH
Q psy6156           3 TKVIEQNGKGPVELFLP--NIMPALLQAYENQDSCVRKCSVF------CMV----ALY--KVTRILFPLIIAEEHPINLV   68 (176)
Q Consensus         3 t~~~e~~~~~~~e~~l~--~iL~~LLd~~~d~e~~VrkAav~------~~v----~p~--~~l~vL~p~l~~~~~~~~~~   68 (176)
                      +.+++..+.. +++++.  .+++.++.+..|...-||++++.      ..+    .|+  ..+..|...+++..+.....
T Consensus       647 ~~l~~~l~~~-~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~  725 (888)
T d1qbkb_         647 SGLAEGLGGN-IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNN  725 (888)
T ss_dssp             HHHHHHHTTT-THHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHH
T ss_pred             HHHHHHhhhh-hhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            4556666644 666664  37888899999998889987632      222    222  24445555556666777788


Q ss_pred             HHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156          69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD--SCVRKCSVFCMVALYKEFGESVLSPYINKL  134 (176)
Q Consensus        69 aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~--s~VRKaaVfClVal~~~lGe~~l~P~L~~L  134 (176)
                      |+..+..++.+.+ +++.+.++.+++.|.+.+++++  ..|+.++.-|+=.+....++. +.||++..
T Consensus       726 a~~~ig~ia~~~~-~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~-~~~~l~~~  791 (888)
T d1qbkb_         726 ATWAIGEISIQMG-IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQE-VAPMLQQF  791 (888)
T ss_dssp             HHHHHHHHHHHTG-GGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHH-HGGGGGGT
T ss_pred             HHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHH-HHhhHHHH
Confidence            9999999996655 7799999999999999998765  458888888888888888887 99999865

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00075  Score=58.13  Aligned_cols=129  Identities=13%  Similarity=0.187  Sum_probs=90.1

Q ss_pred             HHHHHhCCCchhchHhhHHHHHHHHhcCh--hHHHHHHH------HHhh----cChH--HHHHhhhhhhhccC-cchHHH
Q psy6156           4 KVIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRKCS------VFCM----VALY--KVTRILFPLIIAEE-HPINLV   68 (176)
Q Consensus         4 ~~~e~~~~~~~e~~l~~iL~~LLd~~~d~--e~~VrkAa------v~~~----v~p~--~~l~vL~p~l~~~~-~~~~~~   68 (176)
                      .++.+.+++...++.+.+++.+++.+.+.  +.-+++.+      ++..    +.|+  .+++.+...+++.. +.+...
T Consensus       590 ~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~  669 (876)
T d1qgra_         590 NVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLA  669 (876)
T ss_dssp             HHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            34445555556677788888888876542  22333322      2111    2222  35666666665554 557889


Q ss_pred             HHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCC--hhHHHHHHHHHHHHHHHhcCCccccccccC
Q psy6156          69 AIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQD--SCVRKCSVFCMVALYKEFGESVLSPYINKL  134 (176)
Q Consensus        69 aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~--s~VRKaaVfClVal~~~lGe~~l~P~L~~L  134 (176)
                      |+.+++.+. +...+.+.+.++++++.+.+...+.+  .+||-+++.|+-++...+|+. +.||++.+
T Consensus       670 a~~~l~~l~-~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~-~~~yl~~~  735 (876)
T d1qgra_         670 AVGLVGDLC-RALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE-FKKYLEVV  735 (876)
T ss_dssp             HHHHHHHHH-HHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG-GGGGHHHH
T ss_pred             HHHHHHHHH-HHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHh-hHHHHHHH
Confidence            999999888 55567788999999999999997654  689999999999999999987 99998644

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.002  Score=55.39  Aligned_cols=110  Identities=15%  Similarity=0.217  Sum_probs=81.5

Q ss_pred             chHhhHHHHHHHHhcCh-------hHHHHHHH-----HHhhcChHHHHHhhhh----hhhccCcchHHHHHHHHHHHHhh
Q psy6156          16 LFLPNIMPALLQAYENQ-------DSCVRKCS-----VFCMVALYKVTRILFP----LIIAEEHPINLVAIKMLTKVIEQ   79 (176)
Q Consensus        16 ~~l~~iL~~LLd~~~d~-------e~~VrkAa-----v~~~v~p~~~l~vL~p----~l~~~~~~~~~~aLkmLtklv~~   79 (176)
                      .++..+++.+.+...+.       +..+|+++     .+....+..+++.+.|    .+++.+|..+.+++..+..+.+.
T Consensus       317 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~  396 (876)
T d1qgra_         317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG  396 (876)
T ss_dssp             HHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhh
Confidence            34445566666555321       23466654     1112223344444444    45677999999999999999888


Q ss_pred             cCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhcCC
Q psy6156          80 NGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALYKEFGES  125 (176)
Q Consensus        80 ~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~lGe~  125 (176)
                      .+.+.+.+.++.++|.+...++|+++.||.++.+|+-.++..+++.
T Consensus       397 ~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  442 (876)
T d1qgra_         397 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA  442 (876)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchh
Confidence            8888899999999999999999999999999999999999888775

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.27  E-value=0.00022  Score=48.66  Aligned_cols=86  Identities=13%  Similarity=0.121  Sum_probs=60.8

Q ss_pred             cChhHHHHHHHHH--hhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhH
Q psy6156          30 ENQDSCVRKCSVF--CMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCV  107 (176)
Q Consensus        30 ~d~e~~VrkAav~--~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~V  107 (176)
                      .|.+.-||.+++.  ..+.++ .+..|...+++.+|.....|++.|.++-           -++.+|.+.++++|.++.|
T Consensus         2 ~D~~~~VR~~A~~aL~~~~~~-~~~~L~~~l~d~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~V   69 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMGDE-AFEPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFV   69 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCSST-THHHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHCCTHH
T ss_pred             CCcCHHHHHHHHHHHHHhCHH-HHHHHHHHHcCCCHHHHHHHHHHHHhcc-----------hhhhHHHHHhhhccchhHH
Confidence            4556667776532  233433 4566778889999999999988876532           1356889999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcccccc
Q psy6156         108 RKCSVFCMVALYKEFGESVLSPYI  131 (176)
Q Consensus       108 RKaaVfClVal~~~lGe~~l~P~L  131 (176)
                      |.+|+.+|-.    +|.++..|.|
T Consensus        70 R~~a~~aL~~----i~~~~~~~~L   89 (111)
T d1te4a_          70 RSGAARSLEQ----IGGERVRAAM   89 (111)
T ss_dssp             HHHHHHHHHH----HCSHHHHHHH
T ss_pred             HHHHHHHHHH----hCccchHHHH
Confidence            9999999864    4665444433

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.01  Score=44.22  Aligned_cols=52  Identities=15%  Similarity=0.266  Sum_probs=25.1

Q ss_pred             hccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHH
Q psy6156          59 IAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCM  115 (176)
Q Consensus        59 ~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfCl  115 (176)
                      ++.+|.....|+..|.++....     ....+.++|.+....+|+.+.||.+++.++
T Consensus        97 ~d~~~~vr~~a~~aL~~~~~~~-----~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l  148 (276)
T d1oyza_          97 NDKSACVRATAIESTAQRCKKN-----PIYSPKIVEQSQITAFDKSTNVRRATAFAI  148 (276)
T ss_dssp             HCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             cCCChhHHHHHHHHHHHHcccc-----chhhHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence            3444444445555555444221     112234555555555666666665555443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.012  Score=45.16  Aligned_cols=99  Identities=11%  Similarity=0.161  Sum_probs=69.9

Q ss_pred             hHHHHHHHHhc-ChhHHHHHHHHH---hh--cChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchH
Q psy6156          20 NIMPALLQAYE-NQDSCVRKCSVF---CM--VALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPV   85 (176)
Q Consensus        20 ~iL~~LLd~~~-d~e~~VrkAav~---~~--v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l   85 (176)
                      ..+|.|++... +....+|..+.+   .+  -.+.        ..++.|...+.+.+......++.++..++.. +++.-
T Consensus       101 ~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~  179 (264)
T d1xqra1         101 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHK  179 (264)
T ss_dssp             THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGH
T ss_pred             CchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHH
Confidence            56788888775 344445554311   11  1221        2578888889888888888899999998843 44444


Q ss_pred             Hhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          86 ELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        86 ~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      .... ...+|.++..+.++++++|+.|.+++..+.
T Consensus       180 ~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~  214 (264)
T d1xqra1         180 GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV  214 (264)
T ss_dssp             HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            3333 358999999999999999999999998765

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.056  Score=39.95  Aligned_cols=89  Identities=13%  Similarity=0.129  Sum_probs=62.9

Q ss_pred             HHHHHHHHhcChhHHHHHHHH--HhhcChHHHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHH-H
Q psy6156          21 IMPALLQAYENQDSCVRKCSV--FCMVALYKVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPAL-L   97 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAav--~~~v~p~~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l-~   97 (176)
                      ....|++..+|.+..||.+|.  +.....+..++.|...+++.++.....|+..|.++......      .+.+.+-+ .
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~------~~~~~~~l~~   93 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC------EDNVFNILNN   93 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT------HHHHHHHHHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc------ccchHHHHHH
Confidence            455678888999999998873  33456667888888899988888888888888776422111      22223332 3


Q ss_pred             HhhcCCChhHHHHHHHHH
Q psy6156          98 QAYENQDSCVRKCSVFCM  115 (176)
Q Consensus        98 ~a~~~~~s~VRKaaVfCl  115 (176)
                      ...+|+++.||++++.++
T Consensus        94 ~~l~d~~~~vr~~a~~aL  111 (276)
T d1oyza_          94 MALNDKSACVRATAIEST  111 (276)
T ss_dssp             HHHHCSCHHHHHHHHHHH
T ss_pred             HHhcCCChhHHHHHHHHH
Confidence            446788999999998887

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.074  Score=41.43  Aligned_cols=117  Identities=9%  Similarity=0.109  Sum_probs=81.9

Q ss_pred             hHHHHHhCCCchhchHhhHHHHHHHHhcCh--hHHHHHHHHHhh---c--Ch-----H----HHHHhhhhhhhccCcchH
Q psy6156           3 TKVIEQNGKGPVELFLPNIMPALLQAYENQ--DSCVRKCSVFCM---V--AL-----Y----KVTRILFPLIIAEEHPIN   66 (176)
Q Consensus         3 t~~~e~~~~~~~e~~l~~iL~~LLd~~~d~--e~~VrkAav~~~---v--~p-----~----~~l~vL~p~l~~~~~~~~   66 (176)
                      .++.+...++...+++..+++.+++...+.  ...||.+++.+.   +  .+     +    ..+.++...+++.++...
T Consensus       154 ~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  233 (458)
T d1ibrb_         154 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVR  233 (458)
T ss_dssp             HHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHH
Confidence            345566666777889999999999998753  355776652211   1  11     1    144556666677788888


Q ss_pred             HHHHHHHHHHHhhcCCchHHhhhchHH-HHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          67 LVAIKMLTKVIEQNGKGPVELFLPNIM-PALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        67 ~~aLkmLtklv~~~~~d~l~~~L~~ii-P~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      ..+++.+.++++. .++.+.+++.+++ +.+..+.++...++|+.|+..+..++.
T Consensus       234 ~~~~~~l~~i~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         234 VAALQNLVKIMSL-YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             HHHHHHHHHHHHH-CGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            8999999999955 4555666665544 556788899999999999988776653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.01  E-value=0.046  Score=43.15  Aligned_cols=103  Identities=17%  Similarity=0.235  Sum_probs=72.2

Q ss_pred             hHhhHHHHHHHHhcChhHHHHHHHHHh-----hcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCc
Q psy6156          17 FLPNIMPALLQAYENQDSCVRKCSVFC-----MVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKG   83 (176)
Q Consensus        17 ~l~~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d   83 (176)
                      ....+++.+.....+.+.-++..++.+     .-+++.        .++.|..++.+++++....+++.+..++ ..+.+
T Consensus       185 ~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~-~~~~~  263 (434)
T d1q1sc_         185 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV-TGTDE  263 (434)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT-TSCHH
T ss_pred             hhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHH-hhhhH
Confidence            455678888887776554455443211     112222        5566777788888999999999999988 33433


Q ss_pred             hHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          84 PVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        84 ~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      .....+ ..+++.+.+.+.+.+.+||+.|.+++..+..
T Consensus       264 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  301 (434)
T d1q1sc_         264 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA  301 (434)
T ss_dssp             HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhcc
Confidence            333333 5788889999999999999999999988754

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.75  E-value=0.082  Score=46.05  Aligned_cols=122  Identities=13%  Similarity=0.126  Sum_probs=88.5

Q ss_pred             hhchHhhHHHHHHHHhcChhHHHHHHHHHh------hcChH---HHHHhhhhhhhccCcchHHHHHHHHHHHHhhc----
Q psy6156          14 VELFLPNIMPALLQAYENQDSCVRKCSVFC------MVALY---KVTRILFPLIIAEEHPINLVAIKMLTKVIEQN----   80 (176)
Q Consensus        14 ~e~~l~~iL~~LLd~~~d~e~~VrkAav~~------~v~p~---~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~----   80 (176)
                      +.+++...+...+..-.+....+|..+...      ...++   .++..+...+++.+.+....|...+.++++..    
T Consensus       452 ~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~  531 (959)
T d1wa5c_         452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNT  531 (959)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSS
T ss_pred             HHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccc
Confidence            455555555555655566666677654221      12332   47777778888888888889999999998643    


Q ss_pred             ------CCchHHhhhchHHHHHHHhhcCCChhHHHH-----HHHHHHHHHHHhcCCccccccccCcH
Q psy6156          81 ------GKGPVELFLPNIMPALLQAYENQDSCVRKC-----SVFCMVALYKEFGESVLSPYINKLSG  136 (176)
Q Consensus        81 ------~~d~l~~~L~~iiP~l~~a~~~~~s~VRKa-----aVfClVal~~~lGe~~l~P~L~~L~~  136 (176)
                            ..+.+.+.++.++..+...+........|.     ++.|+..+....|+. +.||...+-+
T Consensus       532 ~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~-~~~~~~~i~~  597 (959)
T d1wa5c_         532 SPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS-IQPLFPQLLA  597 (959)
T ss_dssp             SCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT-TGGGHHHHHH
T ss_pred             cchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence                  346778899999999999998887776664     788899999999998 9999875543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.34  E-value=0.12  Score=42.17  Aligned_cols=101  Identities=13%  Similarity=0.174  Sum_probs=73.0

Q ss_pred             hHHHHHHHHhcChhHHHHHHHH-----HhhcChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSV-----FCMVALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav-----~~~v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      .+++.+++...+....++..++     ++.-..+        ..++.|..++++.+++....++..+..++ ..+++...
T Consensus       288 ~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~-~~~~~~~~  366 (503)
T d1wa5b_         288 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT-AGNTEQIQ  366 (503)
T ss_dssp             TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TSCHHHHH
T ss_pred             hhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh-hccHHHHH
Confidence            4677788877766555555431     1111122        15667777888888888888999999987 44555555


Q ss_pred             hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      ..+ ..++|.+++.+.+.+.+|++.|++|+..+...
T Consensus       367 ~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~  402 (503)
T d1wa5b_         367 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG  402 (503)
T ss_dssp             HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccccchhHHhcccCChhHHHHHHHHHHHHHhc
Confidence            555 58999999999999999999999999887654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.15  E-value=0.11  Score=40.93  Aligned_cols=101  Identities=9%  Similarity=0.141  Sum_probs=71.4

Q ss_pred             hHHHHHHHHhcChhHHHHHHHHHh-----hcChHH--------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHH
Q psy6156          20 NIMPALLQAYENQDSCVRKCSVFC-----MVALYK--------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVE   86 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~~--------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~   86 (176)
                      .+++.+++..++.+..++.+++..     .-.++.        +++.|..++++.+......|+..+..+. ..+.+...
T Consensus       230 ~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~-~~~~~~~~  308 (434)
T d1q1sc_         230 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT-AGRQDQIQ  308 (434)
T ss_dssp             TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHT-TSCHHHHH
T ss_pred             ccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhc-cccchhHH
Confidence            367888888887766666554211     112221        5556777788777777888999999987 44444444


Q ss_pred             hhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          87 LFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        87 ~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      ... ..++|.+++.+.+.+.+||+.|++++..+...
T Consensus       309 ~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~  344 (434)
T d1q1sc_         309 QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  344 (434)
T ss_dssp             HHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhc
Confidence            343 35899999999999999999999999877654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.97  E-value=0.088  Score=42.97  Aligned_cols=102  Identities=11%  Similarity=0.216  Sum_probs=71.0

Q ss_pred             hHhhHHHHHHHHhcChhHHHHHHHHHh-----hcChH--------HHHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCc
Q psy6156          17 FLPNIMPALLQAYENQDSCVRKCSVFC-----MVALY--------KVTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKG   83 (176)
Q Consensus        17 ~l~~iL~~LLd~~~d~e~~VrkAav~~-----~v~p~--------~~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d   83 (176)
                      ....++|.++....+.+.-++..+.++     .-+++        .+++.|..++.++++.....|++.+..++ ....+
T Consensus       243 ~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~-~~~~~  321 (503)
T d1wa5b_         243 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDL  321 (503)
T ss_dssp             HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT-TSCHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHH-HHHHH
Confidence            455788888888876553333332111     11222        14556677788888888889999999988 33334


Q ss_pred             hHHhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          84 PVELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        84 ~l~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      .....+ ..++|.+...++++++++||.+.+|+-.+.
T Consensus       322 ~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~  358 (503)
T d1wa5b_         322 QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT  358 (503)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence            443333 478999999999999999999999998764

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.1  Score=39.94  Aligned_cols=67  Identities=4%  Similarity=0.021  Sum_probs=53.5

Q ss_pred             HHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhh--chHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          51 TRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFL--PNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        51 l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L--~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      ++.|...+++++......|.+.|..++.  +.++....+  ...+|.|++.+.+.+.+||++|..|+-.+.
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~   72 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV   72 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTS--SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            5677788899999999999999999982  223333332  356999999999999999999999987775

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.74  E-value=0.47  Score=35.93  Aligned_cols=99  Identities=12%  Similarity=0.020  Sum_probs=65.7

Q ss_pred             HHHHHHHHhcChhHHHHHHH--HHhh--c-ChH-H-------HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHh
Q psy6156          21 IMPALLQAYENQDSCVRKCS--VFCM--V-ALY-K-------VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVEL   87 (176)
Q Consensus        21 iL~~LLd~~~d~e~~VrkAa--v~~~--v-~p~-~-------~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~   87 (176)
                      .+|.|++...+.+.-|+..+  .+..  . ..+ +       .++.|...+.+++......|+..|.++.. .+++.-..
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~~   81 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF-RSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS-SCHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            57888888887766666544  1111  1 222 1       46778888888888888899999999983 22221111


Q ss_pred             hh-chHHHHHHHhhc-CCChhHHHHHHHHHHHHHH
Q psy6156          88 FL-PNIMPALLQAYE-NQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        88 ~L-~~iiP~l~~a~~-~~~s~VRKaaVfClVal~~  120 (176)
                      .. ...+|.+++.+. +.++++|..|..|+..+..
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~  116 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS  116 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHh
Confidence            11 235788887764 5778899999998887753

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.14  E-value=1.8  Score=32.24  Aligned_cols=71  Identities=14%  Similarity=0.175  Sum_probs=51.8

Q ss_pred             HHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCchHHh-hhchHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q psy6156          50 VTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKGPVEL-FLPNIMPALLQAYENQDSCVRKCSVFCMVALYKE  121 (176)
Q Consensus        50 ~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d~l~~-~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~~~  121 (176)
                      .++.|...++++ +......++..+..++ +..++.... .-...+|.+.+.+++.+..+++.+.+++..++..
T Consensus       102 ~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~-~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~  174 (264)
T d1xqra1         102 ALRKLLRLLDRDACDTVRVKALFAISCLV-REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG  174 (264)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHH-TTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHHh-ccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc
Confidence            566777777655 4445677888888888 333333322 3356789999999999999999999999887654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.56  E-value=1.8  Score=34.85  Aligned_cols=70  Identities=10%  Similarity=0.120  Sum_probs=54.8

Q ss_pred             HHHhhhhhhhccCcchHHHHHHHHHHHHhhcCCchHHhhhchHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q psy6156          50 VTRILFPLIIAEEHPINLVAIKMLTKVIEQNGKGPVELFLPNIMPALLQAYENQDSCVRKCSVFCMVALY  119 (176)
Q Consensus        50 ~l~vL~p~l~~~~~~~~~~aLkmLtklv~~~~~d~l~~~L~~iiP~l~~a~~~~~s~VRKaaVfClVal~  119 (176)
                      .++.|...+.+++......|+..|..+........-.-.-...+|.|++-+++.+.+++..+..|+-.+.
T Consensus       102 ~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~  171 (529)
T d1jdha_         102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA  171 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHh
Confidence            5778888888888888889999999988544433222234568899999999999999999999987664

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.14  E-value=3.2  Score=33.23  Aligned_cols=99  Identities=10%  Similarity=0.132  Sum_probs=63.4

Q ss_pred             hHHHHHHHHhcChhHHHHH-HH-HHhhc-----------ChHHHHHhhhhhhhcc-CcchHHHHHHHHHHHHhhcCCchH
Q psy6156          20 NIMPALLQAYENQDSCVRK-CS-VFCMV-----------ALYKVTRILFPLIIAE-EHPINLVAIKMLTKVIEQNGKGPV   85 (176)
Q Consensus        20 ~iL~~LLd~~~d~e~~Vrk-Aa-v~~~v-----------~p~~~l~vL~p~l~~~-~~~~~~~aLkmLtklv~~~~~d~l   85 (176)
                      -.+|.|++..+|.+..+|. |+ .+..+           .-..+++.|...+... +......|...|..+..  +.+..
T Consensus        17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~--~~~~~   94 (529)
T d1jdha_          17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH--HREGL   94 (529)
T ss_dssp             CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--SHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--CchhH
Confidence            4588888888877655554 43 11111           1123566666666554 45566667777777752  22222


Q ss_pred             Hhhh-chHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q psy6156          86 ELFL-PNIMPALLQAYENQDSCVRKCSVFCMVALYK  120 (176)
Q Consensus        86 ~~~L-~~iiP~l~~a~~~~~s~VRKaaVfClVal~~  120 (176)
                      .... ...+|.|++...+..++|++.|+.++-.++.
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~  130 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL  130 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhc
Confidence            2222 2568999999999999999999999887764