Psyllid ID: psy6213
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | 2.2.26 [Sep-21-2011] | |||||||
| Q7ZVL2 | 779 | WD repeat-containing prot | yes | N/A | 0.833 | 0.353 | 0.541 | 1e-89 | |
| Q7ZX22 | 780 | WD repeat-containing prot | N/A | N/A | 0.833 | 0.352 | 0.526 | 3e-89 | |
| Q8CFJ9 | 790 | WD repeat-containing prot | yes | N/A | 0.833 | 0.348 | 0.523 | 5e-88 | |
| Q5ZMV9 | 705 | WD repeat-containing prot | yes | N/A | 0.712 | 0.333 | 0.527 | 1e-73 | |
| Q54JS5 | 1023 | WD repeat-containing prot | yes | N/A | 0.818 | 0.263 | 0.458 | 1e-65 | |
| Q96S15 | 920 | WD repeat-containing prot | no | N/A | 0.481 | 0.172 | 0.509 | 1e-47 | |
| O14186 | 846 | Uncharacterized WD repeat | yes | N/A | 0.784 | 0.306 | 0.336 | 2e-39 | |
| Q54WA3 | 316 | Peroxisomal targeting sig | no | N/A | 0.763 | 0.797 | 0.298 | 2e-22 | |
| Q6CME1 | 1321 | Restriction of telomere c | yes | N/A | 0.675 | 0.168 | 0.248 | 5e-21 | |
| Q75AV6 | 1361 | Restriction of telomere c | yes | N/A | 0.606 | 0.146 | 0.269 | 2e-20 |
| >sp|Q7ZVL2|WDR24_DANRE WD repeat-containing protein 24 OS=Danio rerio GN=wdr24 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 330 bits (845), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 151/279 (54%), Positives = 202/279 (72%), Gaps = 4/279 (1%)
Query: 22 SRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81
RN+FKI+ +++ FVE NLRVG+ +LNFSC DV W +EEN +AT ATNGAVV WNL
Sbjct: 39 GRNIFKIYGLEEDGFVERLNLRVGRKPSLNFSCADVMWHQMEENLLATAATNGAVVTWNL 98
Query: 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTE 141
+ R+KQE++F +HKRTVNKV FH E N L+SGSQDG M+ FD+R +ES F +E
Sbjct: 99 SRPCRNKQEQLFTEHKRTVNKVCFHPTEVNMLLSGSQDGFMKCFDLRKKESVSTFSGQSE 158
Query: 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLA 200
SVRDV+F+ + FA+ ENG +Q WD+RRP++ FTAH+GP+F CDWHPE WLA
Sbjct: 159 SVRDVQFSMKDYFTFAASFENGNVQLWDIRRPDRYERMFTAHTGPVFCCDWHPEDRGWLA 218
Query: 201 TASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259
T RDK +KVWD+S E Y + T ASV+R+KWRP+R++HLA+CS++VD ++ VWD+R
Sbjct: 219 TGGRDKMVKVWDMSTNRVKEIYCVQTFASVARVKWRPERRYHLATCSMMVDHNIYVWDVR 278
Query: 260 RPYIPLASFTEHKDVVSGLAWR--GDPQLFIASSRVSII 296
RP+IP A+F EHKDV +G+ WR DP ++ S+ S +
Sbjct: 279 RPFIPFATFEEHKDVTTGIVWRHQHDPYFLLSGSKDSTL 317
|
Danio rerio (taxid: 7955) |
| >sp|Q7ZX22|WDR24_XENLA WD repeat-containing protein 24 OS=Xenopus laevis GN=wdr24 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (841), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 147/279 (52%), Positives = 204/279 (73%), Gaps = 4/279 (1%)
Query: 22 SRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81
RN+FKI+ +++ FVE NLRVG+ +LNFSC DV W +++N +AT ATNG VV WNL
Sbjct: 40 GRNIFKIYSMEEDHFVEKLNLRVGRKPSLNFSCADVVWHQMDDNLLATAATNGVVVTWNL 99
Query: 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTE 141
G+ SR+KQ+++F +HKRTVNKV FH E L+SGSQDG M+ FD+R ++S F +E
Sbjct: 100 GKPSRNKQDQLFTEHKRTVNKVCFHPTEVYMLLSGSQDGYMKCFDLRKKDSVSTFSGQSE 159
Query: 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLA 200
SVRDV+F+ + FA+ ENG +Q WD+RRP++C FTAH+GP+F CDWHPE WLA
Sbjct: 160 SVRDVQFSIRDYFTFAATFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGWLA 219
Query: 201 TASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259
T RDK +KVWD++ + E Y + TIASV+R+KWRP+RK+H+ +CS++VD ++ VWD+R
Sbjct: 220 TGGRDKMVKVWDMNTNRAKEIYCVQTIASVARVKWRPERKYHIGTCSMMVDHNIYVWDVR 279
Query: 260 RPYIPLASFTEHKDVVSGLAWR--GDPQLFIASSRVSII 296
RP+IP A+F EHKDV +G+ WR DP ++ S+ S +
Sbjct: 280 RPFIPFATFEEHKDVTTGIIWRHMHDPSFLLSGSKDSTL 318
|
Xenopus laevis (taxid: 8355) |
| >sp|Q8CFJ9|WDR24_MOUSE WD repeat-containing protein 24 OS=Mus musculus GN=Wdr24 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 205/279 (73%), Gaps = 4/279 (1%)
Query: 22 SRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81
R++FKI+ I++ +FVE NLRVG+ +LN SC DV W ++EN +AT ATNG VV WNL
Sbjct: 45 GRSIFKIYAIEEEQFVEKLNLRVGRKPSLNLSCADVVWHQMDENLLATAATNGVVVTWNL 104
Query: 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTE 141
G+ SR+KQ+++F +HKRTVNKV FH E++ L+SGSQDG M+ FD+R ++S F +E
Sbjct: 105 GRPSRNKQDQLFTEHKRTVNKVCFHPTEAHVLLSGSQDGFMKCFDLRRKDSVSTFSGQSE 164
Query: 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLA 200
SVRDV+F+ + FAS ENG +Q WD+RRP++C FTAH+GP+F CDWHPE WLA
Sbjct: 165 SVRDVQFSIRDYFTFASTFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGWLA 224
Query: 201 TASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259
T RDK +KVWD++ + E + + TIASV+R+KWRP+ + HLA+CS++VD ++ VWD+R
Sbjct: 225 TGGRDKMVKVWDMTTHRAKEIHCVQTIASVARVKWRPECRHHLATCSMMVDHNIYVWDVR 284
Query: 260 RPYIPLASFTEHKDVVSGLAWR--GDPQLFIASSRVSII 296
RP++P A F EH+DV +G+AWR DP ++ S+ S +
Sbjct: 285 RPFVPAAMFEEHRDVTTGIAWRHPHDPSFLLSGSKDSTL 323
|
Mus musculus (taxid: 10090) |
| >sp|Q5ZMV9|WDR24_CHICK WD repeat-containing protein 24 OS=Gallus gallus GN=WDR24 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (706), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 126/239 (52%), Positives = 173/239 (72%), Gaps = 4/239 (1%)
Query: 62 IEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGT 121
++EN +AT ATNG VV WNLG+ SR+KQ+++F +HKRTVNKV FH E L+SGSQDG
Sbjct: 1 MDENLLATAATNGVVVTWNLGKPSRNKQDQLFTEHKRTVNKVCFHPTEVYMLLSGSQDGY 60
Query: 122 MRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT 181
M+ FD+R ++S F +ESVRDV+F+ + FA+ ENG +Q WD+RRP++ FT
Sbjct: 61 MKCFDLRKKDSVSTFSGQSESVRDVQFSIRDYFTFAATFENGNVQLWDIRRPDRYERMFT 120
Query: 182 AHSGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRK 239
AH+GP+F CDWHPE WLAT RDK +KVWD++ + E Y + TIASV+R+KWRP+ K
Sbjct: 121 AHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMNTTRAKEIYCVQTIASVARVKWRPECK 180
Query: 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWR--GDPQLFIASSRVSII 296
H+A+CS++VD ++ VWD+RRP+IP A F EHKDV +G+ WR DP ++ S+ S +
Sbjct: 181 HHIATCSMMVDHNIYVWDVRRPFIPSAMFEEHKDVTTGIVWRHLHDPYFLLSGSKDSTL 239
|
Gallus gallus (taxid: 9031) |
| >sp|Q54JS5|WDR24_DICDI WD repeat-containing protein 24 homolog OS=Dictyostelium discoideum GN=wdr24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 128/279 (45%), Positives = 184/279 (65%), Gaps = 9/279 (3%)
Query: 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAW-SCIEENH---IATGATNGAVVV 78
R++ KI +++ EF T NLR GK +LN++ ND W + EN+ IAT ATNGAVV+
Sbjct: 38 RDIVKIVSVQNNEFKVTSNLRAGKTQSLNYTGNDCCWHPSLLENYRFLIATAATNGAVVI 97
Query: 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR--CQESTKIF 136
WN + ERVF DH R VNK+++H + + +++GSQD T+R++DIR S F
Sbjct: 98 WNTVREGSKSVERVFTDHSRAVNKLAWHPEKLDCILTGSQDNTLRMWDIRDSANASKITF 157
Query: 137 HSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH 196
+ES+RDV+FNP FA+ +NGTIQ WD+R+P + T+H G + DWHPE
Sbjct: 158 SPKSESIRDVQFNPSQANQFAAAFDNGTIQLWDIRKPTIAVEKITSHQGLVLTIDWHPEE 217
Query: 197 A-WLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNV 255
+A+ RD+ I+VWD S SL +++TI+SVSRIKWRP K+H+ASCS +VD +++
Sbjct: 218 KNIIASGGRDRAIRVWDFSNGKSLN-NVSTISSVSRIKWRPGNKWHIASCSSIVDFQIHI 276
Query: 256 WDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294
WD+++PYIPL SFT+H+DV +GL W+ P I+ S+ S
Sbjct: 277 WDVKKPYIPLFSFTDHRDVPTGLIWKS-PSSLISCSKDS 314
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q96S15|WDR24_HUMAN WD repeat-containing protein 24 OS=Homo sapiens GN=WDR24 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 83/163 (50%), Positives = 118/163 (72%), Gaps = 4/163 (2%)
Query: 138 SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-H 196
+ESVRDV+F+ + FAS ENG +Q WD+RRP++C FTAH+GP+F CDWHPE
Sbjct: 291 GQSESVRDVQFSIRDYFTFASTFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDR 350
Query: 197 AWLATASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNV 255
WLAT RDK +KVWD++ + E + + TIASV+R+KWRP+ + HLA+CS++VD ++ V
Sbjct: 351 GWLATGGRDKMVKVWDMTTHRAKEMHCVQTIASVARVKWRPECRHHLATCSMMVDHNIYV 410
Query: 256 WDIRRPYIPLASFTEHKDVVSGLAWR--GDPQLFIASSRVSII 296
WD+RRP++P A F EH+DV +G+AWR DP ++ S+ S +
Sbjct: 411 WDVRRPFVPAAMFEEHRDVTTGIAWRHPHDPSFLLSGSKDSSL 453
|
Homo sapiens (taxid: 9606) |
| >sp|O14186|YDSB_SCHPO Uncharacterized WD repeat-containing protein C4F8.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4F8.11 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 152/273 (55%), Gaps = 14/273 (5%)
Query: 52 FSCNDVAW-SCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVES 110
SCNDV W S N I T + G + VW+ ++ FN+H R V+K+
Sbjct: 91 ISCNDVKWGSSFASNLIFTCSPLGNLNVWD---VNLEALLYDFNEHSRAVHKLDISSFHP 147
Query: 111 NWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV 170
+++++ SQDG ++L+D + ST F N+E+ RDV F+P P F + ++G +Q+WD+
Sbjct: 148 SYVLTASQDGLIKLWDYKESSSTITFRGNSEAARDVVFSPSEPNEFVAAYDSGILQKWDI 207
Query: 171 RRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD-LSIKPSLEYSINTIASV 229
R P+ F + AH+G + ++ P +LA+ RDKTI++WD S K +IN ++ +
Sbjct: 208 RFPKLPFLKLAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNKKKSLITINNVSPL 267
Query: 230 SRIKWRPQRK-----FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDP 284
+ ++WRP + LAS SLV D+++NVWDI RPYIP + + H +VS + W
Sbjct: 268 NCVRWRPANQQSRGSNQLASSSLVGDTAINVWDITRPYIPYRTVSCHDSIVSTMHW-AST 326
Query: 285 QLFIASSRVSIIPRAKNIKIFIASSRVSIIPRA 317
+L + S+ I + + F + + ++PRA
Sbjct: 327 ELLWSCSKDGIFSQTRVENAF---NCIDMLPRA 356
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54WA3|PEX7_DICDI Peroxisomal targeting signal 2 receptor OS=Dictyostelium discoideum GN=pex7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 127/268 (47%), Gaps = 16/268 (5%)
Query: 17 GLAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAV 76
G+ R L +D +T + R G D WS E H+A+ + +G++
Sbjct: 32 GIIGNGRQYILDVLDRDIGAFKTFDTRDG--------LYDCTWSEENECHVASSSGDGSI 83
Query: 77 VVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF 136
+W+ S + + F +H + V V ++ V + I+GS D ++++++ R S K F
Sbjct: 84 KIWDTQAPSGGRPIKSFEEHTKEVYSVDWNLVTKDTFITGSWDQSIKIWNPRMDRSLKTF 143
Query: 137 HSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-E 195
+ + ++P + + FASVS + T++ WD R + AH I CDW+
Sbjct: 144 REHRYCIYSAIWSPRNAHLFASVSGDRTLKIWD-SRDNRSLNTIKAHDHEILTCDWNKYN 202
Query: 196 HAWLATASRDKTIKVWDLSI--KPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSV 253
+ T S DKTI++WD+ +P+ +T A V RIK P + LASCS D SV
Sbjct: 203 DKEVVTGSVDKTIRIWDIRYPDRPTTILRGHTYA-VRRIKCSPHSESMLASCSY--DMSV 259
Query: 254 NVWDIRRPYIP-LASFTEHKDVVSGLAW 280
VWD R P +A H + V GL W
Sbjct: 260 IVWDRAREQDPIIARMDHHTEFVVGLDW 287
|
Binds to the N-terminal PTS2-type peroxisomal targeting signal and plays an essential role in peroxisomal protein import. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q6CME1|RTC1_KLULA Restriction of telomere capping protein 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RTC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 135/282 (47%), Gaps = 59/282 (20%)
Query: 64 ENHIATGATNGAVVVWNLGQISRSKQERV--FNDHKRTVNKVSFHYVESNWLISGSQDGT 121
+N++A T+ +V ++++ + S V ++H R++N V F+ V+++ LISG QDG
Sbjct: 190 KNYVAICGTSTSVAIYDINKTSAIDNPVVTSLSEHTRSINSVDFNMVQTSLLISGGQDGC 249
Query: 122 MRLFDIRCQE-----STKIFHSNTESVRDVEFNPHSPYA------------FASVSENGT 164
++++D+R + S ++ ++S+RDV++ P ++ FASV ++G
Sbjct: 250 IKIWDLRSPKISTTRSDVSINTGSDSIRDVKWMPSYEFSNDTNGLSNRHFKFASVHDSGL 309
Query: 165 IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW------------- 211
+ ++D+R+P + + AHSGP +WHP ++ + RD +W
Sbjct: 310 LLKFDLRQPNQAEKKINAHSGPALCLNWHPHQDYIISGGRDGKCCLWYVGDKSNQVGNIS 369
Query: 212 ------------------DLSIKPSL---EYSINTIASVSRIKWRPQRKFH-----LASC 245
L + +L E +INT S++++K+RP+ + + + +
Sbjct: 370 STNLNSSNPATHNLSSSYPLGLSNTLAFPELTINTARSMNKLKFRPKYETNVFNSLIGTS 429
Query: 246 SLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLF 287
S+ DS V+V+ + R YIP V G W D +F
Sbjct: 430 SMGEDSDVSVYSLARKYIPKNVIASSAPSV-GFVWWDDDTIF 470
|
May be involved in a process influencing telomere capping. Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590) |
| >sp|Q75AV6|RTC1_ASHGO Restriction of telomere capping protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RTC1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 125/256 (48%), Gaps = 56/256 (21%)
Query: 64 ENHIATGATNGAVVVWNLGQISRSKQERV--FNDHKRTVNKVSFHYVESNWLISGSQDGT 121
+N+IA T+ +V ++++ + S + ++H R++N V F+ +++ LISG QDG
Sbjct: 196 KNYIAICGTSTSVSIYDINRASAKDSPLITTLSEHSRSINSVDFNMGQTHLLISGGQDGC 255
Query: 122 MRLFDIRCQESTKI------FHSNTESVRDVEFNPHSPYA----------------FASV 159
++++D+R S K+ F+S ++SVRDV++ P +A FASV
Sbjct: 256 IKVWDLRSH-SYKVNRSDLNFNSGSDSVRDVKWMPTYDFASLGADTSLCSSGRSNKFASV 314
Query: 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS- 218
++G + +D+R+P + + AHSGP WHP ++ + RD +W + K +
Sbjct: 315 HDSGLLLTFDMRQPNQVERKINAHSGPGLCMHWHPHMDYIISGGRDGKCALWYVGDKVNS 374
Query: 219 -------------------------LEYSINTIASVSRIKWRPQRKFHL-----ASCSLV 248
LE INT VS++K+RP+ ++ A+ S+
Sbjct: 375 MVSVPQGHNSATSYSINTAPITTGYLETVINTSHPVSKLKFRPKYVHNMLNSLIATSSMG 434
Query: 249 VDSSVNVWDIRRPYIP 264
DS V ++ + R +IP
Sbjct: 435 EDSDVTIYSLARKHIP 450
|
May be involved in a process influencing telomere capping. Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | ||||||
| 350421586 | 769 | PREDICTED: WD repeat-containing protein | 0.872 | 0.374 | 0.692 | 1e-116 | |
| 340717847 | 769 | PREDICTED: WD repeat-containing protein | 0.872 | 0.374 | 0.692 | 1e-116 | |
| 345490329 | 779 | PREDICTED: WD repeat-containing protein | 0.872 | 0.369 | 0.695 | 1e-116 | |
| 307173002 | 785 | WD repeat-containing protein 24 [Campono | 0.884 | 0.371 | 0.675 | 1e-116 | |
| 328780147 | 769 | PREDICTED: WD repeat-containing protein | 0.872 | 0.374 | 0.685 | 1e-115 | |
| 380023046 | 769 | PREDICTED: WD repeat-containing protein | 0.872 | 0.374 | 0.685 | 1e-115 | |
| 383856006 | 771 | PREDICTED: WD repeat-containing protein | 0.806 | 0.345 | 0.715 | 1e-115 | |
| 332024844 | 923 | WD repeat-containing protein 24 [Acromyr | 0.884 | 0.316 | 0.668 | 1e-114 | |
| 307199296 | 771 | WD repeat-containing protein 24 [Harpegn | 0.872 | 0.373 | 0.681 | 1e-114 | |
| 322796275 | 784 | hypothetical protein SINV_80416 [Solenop | 0.884 | 0.372 | 0.665 | 1e-113 |
| >gi|350421586|ref|XP_003492893.1| PREDICTED: WD repeat-containing protein 24-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/289 (69%), Positives = 238/289 (82%), Gaps = 1/289 (0%)
Query: 5 SPVHKHGLKADNG-LAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE 63
P + L DN + RNVFKIF + + F E NLRVGKN+NLNFSCNDVAW+ I+
Sbjct: 12 GPANALALNKDNSQVVIAGRNVFKIFTLLEDRFEEACNLRVGKNLNLNFSCNDVAWNLID 71
Query: 64 ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMR 123
++ +AT ATNGAVVVWNL + SRSKQE VF DHKRTVNKVSFH E WLISGSQDGTM+
Sbjct: 72 DHILATAATNGAVVVWNLNKSSRSKQEHVFIDHKRTVNKVSFHMTEPMWLISGSQDGTMK 131
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183
FD+R +E+T+ F+SNTESVRDV+F PHSP+ FA+VSENG +QQWD+R+P++ F FTAH
Sbjct: 132 CFDLRIKEATRTFYSNTESVRDVQFCPHSPHTFAAVSENGHVQQWDLRKPDRYFQHFTAH 191
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLA 243
SGPIFACDWHPE AWLATASRDKTIKVWDL KPS +Y I+TIASV RIKWRPQRK+H++
Sbjct: 192 SGPIFACDWHPETAWLATASRDKTIKVWDLLGKPSCDYIIHTIASVGRIKWRPQRKYHIS 251
Query: 244 SCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
SC+LVVD S+NVWDIRRPYIP ASF EHKDV +G+AWRG+PQ F+++SR
Sbjct: 252 SCALVVDCSINVWDIRRPYIPFASFNEHKDVPTGVAWRGNPQSFLSTSR 300
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340717847|ref|XP_003397386.1| PREDICTED: WD repeat-containing protein 24-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/289 (69%), Positives = 238/289 (82%), Gaps = 1/289 (0%)
Query: 5 SPVHKHGLKADNG-LAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE 63
P + L DN + RNVFKIF + + F E NLRVGKN+NLNFSCNDVAW+ I+
Sbjct: 12 GPANALALNKDNSQVVIAGRNVFKIFTLLEDRFEEACNLRVGKNLNLNFSCNDVAWNLID 71
Query: 64 ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMR 123
++ +AT ATNGAVVVWNL + SRSKQE VF DHKRTVNKVSFH E WLISGSQDGTM+
Sbjct: 72 DHILATAATNGAVVVWNLNKSSRSKQEHVFIDHKRTVNKVSFHMTEPMWLISGSQDGTMK 131
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183
FD+R +E+T+ F+SNTESVRDV+F PHSP+ FA+VSENG +QQWD+R+P++ F FTAH
Sbjct: 132 CFDLRIKEATRTFYSNTESVRDVQFCPHSPHTFAAVSENGHVQQWDLRKPDRYFQHFTAH 191
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLA 243
SGPIFACDWHPE AWLATASRDKTIKVWDL KPS +Y I+TIASV RIKWRPQRK+H++
Sbjct: 192 SGPIFACDWHPETAWLATASRDKTIKVWDLLGKPSCDYIIHTIASVGRIKWRPQRKYHIS 251
Query: 244 SCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
SC+LVVD S+NVWDIRRPYIP ASF EHKDV +G+AWRG+PQ F+++SR
Sbjct: 252 SCALVVDCSINVWDIRRPYIPFASFNEHKDVPTGVAWRGNPQSFLSTSR 300
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345490329|ref|XP_001605545.2| PREDICTED: WD repeat-containing protein 24-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/289 (69%), Positives = 236/289 (81%), Gaps = 1/289 (0%)
Query: 5 SPVHKHGLKADNG-LAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE 63
P + L DN + RNVFKIF + + F E NLRVGKN+NLNFSCNDVAW+ IE
Sbjct: 12 GPANALALNKDNSQVVIAGRNVFKIFTLLEDRFEEFCNLRVGKNLNLNFSCNDVAWNLIE 71
Query: 64 ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMR 123
++ +AT ATNGAVVVWNL + SRSKQE VF DHKRTVNKVSFH E WLISGSQDGTM+
Sbjct: 72 DHMLATAATNGAVVVWNLNRPSRSKQEHVFVDHKRTVNKVSFHMSEPMWLISGSQDGTMK 131
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183
FD+R +E+T+ F+SNTESVRDV+F+PH + FA+VSENG +Q WD+RRP+K F FTAH
Sbjct: 132 CFDLRIKEATRTFYSNTESVRDVQFSPHQAHTFAAVSENGHVQLWDLRRPDKYFQHFTAH 191
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLA 243
SGPIFACDWHPE WLATASRDKTIKVWDL+ KPS +Y+INTIASV IKWRPQRK+H+A
Sbjct: 192 SGPIFACDWHPETTWLATASRDKTIKVWDLTAKPSCDYTINTIASVGGIKWRPQRKYHIA 251
Query: 244 SCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
SC+LVVD S+NVWDIRRPYIP ASF EHKDV +G+AWRGDPQ F+++SR
Sbjct: 252 SCALVVDFSINVWDIRRPYIPFASFNEHKDVPTGIAWRGDPQSFLSTSR 300
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307173002|gb|EFN64144.1| WD repeat-containing protein 24 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 198/293 (67%), Positives = 239/293 (81%), Gaps = 1/293 (0%)
Query: 1 MAYLSPVHKHGLKADNG-LAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAW 59
+A P + L DN + RNVFKIF++ + +F E NLRVGKN+NLNFSCNDVAW
Sbjct: 8 IAQEGPANALALNKDNSQVVIAGRNVFKIFILLEDKFEEACNLRVGKNLNLNFSCNDVAW 67
Query: 60 SCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD 119
+ +++ +AT ATNGAVVVWNL + SRSKQE VF DHKRTVNKVSFH E WLISGSQD
Sbjct: 68 NLNDDHILATAATNGAVVVWNLNKQSRSKQEHVFIDHKRTVNKVSFHMTEPMWLISGSQD 127
Query: 120 GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ 179
GTM+ FD+R +E+ K F+SNTESVRDV+F P P+ FA+VSENG +QQWD+R+P++ F
Sbjct: 128 GTMKCFDLRIKEAIKTFYSNTESVRDVQFCPQQPHTFAAVSENGQVQQWDMRKPDRFFQH 187
Query: 180 FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239
FTAHSGPIFACDWHPE WLATASRDKTIKVWDLS KPS +Y+I+TIASV RIKWRPQ+K
Sbjct: 188 FTAHSGPIFACDWHPEATWLATASRDKTIKVWDLSGKPSCDYAIHTIASVGRIKWRPQKK 247
Query: 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
+H+ASC+LVVD S+NVWDIRRPYIP ASF EHKDV +G+AWRG+PQ F+++SR
Sbjct: 248 YHIASCALVVDCSINVWDIRRPYIPFASFNEHKDVPTGVAWRGNPQSFLSTSR 300
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328780147|ref|XP_397394.3| PREDICTED: WD repeat-containing protein 24-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/289 (68%), Positives = 237/289 (82%), Gaps = 1/289 (0%)
Query: 5 SPVHKHGLKADNG-LAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE 63
P + L DN + RNVFKIF + + F E NLRVGKN+NLNFSCNDVAW+ I+
Sbjct: 12 GPANALALNKDNSQVVIAGRNVFKIFTLLEDRFEEACNLRVGKNLNLNFSCNDVAWNLID 71
Query: 64 ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMR 123
++ +AT ATNGAVVVWNL + SRSKQE VF DHKRTVNKVSFH E WLISGSQDGTM+
Sbjct: 72 DHILATAATNGAVVVWNLNKSSRSKQEHVFIDHKRTVNKVSFHMTEPMWLISGSQDGTMK 131
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183
FD+R +E+T+ F+SNTESVRDV+F PHSP+ FA+VSENG +QQWD+R+P++ F FTAH
Sbjct: 132 CFDLRIKEATRTFYSNTESVRDVQFCPHSPHTFAAVSENGHVQQWDLRKPDRYFQHFTAH 191
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLA 243
SGPIFACDWHPE WLATASRDKTIKVWDL KP+ +Y I+TIASV RIKWRPQRK+H++
Sbjct: 192 SGPIFACDWHPETIWLATASRDKTIKVWDLLGKPTCDYIIHTIASVGRIKWRPQRKYHIS 251
Query: 244 SCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
SC+LVVD S+NVWDIRRPYIP ASF EHKDV +G+AWRG+PQ F+++SR
Sbjct: 252 SCALVVDCSINVWDIRRPYIPFASFNEHKDVPTGVAWRGNPQSFLSTSR 300
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380023046|ref|XP_003695341.1| PREDICTED: WD repeat-containing protein 24-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/289 (68%), Positives = 237/289 (82%), Gaps = 1/289 (0%)
Query: 5 SPVHKHGLKADNG-LAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE 63
P + L DN + RNVFKIF + + F E NLRVGKN+NLNFSCNDVAW+ I+
Sbjct: 12 GPANALALNKDNSQVVIAGRNVFKIFTLLEDRFEEACNLRVGKNLNLNFSCNDVAWNLID 71
Query: 64 ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMR 123
++ +AT ATNGAVVVWNL + SRSKQE VF DHKRTVNKVSFH E WLISGSQDGTM+
Sbjct: 72 DHILATAATNGAVVVWNLNKSSRSKQEHVFIDHKRTVNKVSFHMTEPMWLISGSQDGTMK 131
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183
FD+R +E+T+ F+SNTESVRDV+F PHSP+ FA+VSENG +QQWD+R+P++ F FTAH
Sbjct: 132 CFDLRIKEATRTFYSNTESVRDVQFCPHSPHTFAAVSENGHVQQWDLRKPDRYFQHFTAH 191
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLA 243
SGPIFACDWHPE WLATASRDKTIKVWDL KP+ +Y I+TIASV RIKWRPQRK+H++
Sbjct: 192 SGPIFACDWHPETIWLATASRDKTIKVWDLLGKPTCDYIIHTIASVGRIKWRPQRKYHIS 251
Query: 244 SCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
SC+LVVD S+NVWDIRRPYIP ASF EHKDV +G+AWRG+PQ F+++SR
Sbjct: 252 SCALVVDCSINVWDIRRPYIPFASFNEHKDVPTGVAWRGNPQSFLSTSR 300
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383856006|ref|XP_003703501.1| PREDICTED: WD repeat-containing protein 24-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/271 (71%), Positives = 231/271 (85%)
Query: 22 SRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81
RNVFKIF + + F E NLRVGKN+NLNFSCND+AW+ I+++ +A+ ATNGAVVVWNL
Sbjct: 30 GRNVFKIFTLLEDRFEEACNLRVGKNLNLNFSCNDIAWNLIDDHILASAATNGAVVVWNL 89
Query: 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTE 141
+ SRSKQE VF DHKRTVNKVSFH E WLISGSQDGTM+ FD+R +E+T+ F+SNTE
Sbjct: 90 NKSSRSKQEHVFIDHKRTVNKVSFHMTEPMWLISGSQDGTMKCFDLRIKEATRTFYSNTE 149
Query: 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLAT 201
SVRDV+F PHSP+ FA+VSENG +QQWD+R+PE+ F FTAHSGPIFACDWHPE WLAT
Sbjct: 150 SVRDVQFCPHSPHTFAAVSENGHVQQWDLRKPERYFQHFTAHSGPIFACDWHPETNWLAT 209
Query: 202 ASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261
ASRDKTIKVWDL KPS +Y I+TIASV RIKWRPQRK+H++SC+LVVD S+NVWDIRRP
Sbjct: 210 ASRDKTIKVWDLLGKPSCDYVIHTIASVGRIKWRPQRKYHISSCALVVDCSINVWDIRRP 269
Query: 262 YIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
YIP ASF EHKDV +G+AWRG+PQ F+++SR
Sbjct: 270 YIPFASFNEHKDVPTGVAWRGNPQSFLSTSR 300
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332024844|gb|EGI65032.1| WD repeat-containing protein 24 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 196/293 (66%), Positives = 236/293 (80%), Gaps = 1/293 (0%)
Query: 1 MAYLSPVHKHGLKADNG-LAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAW 59
+A P + L DN + RNVFKIF + + F E NLRVGKN+NLNFSCNDVAW
Sbjct: 146 IAQEGPANALALNKDNSQVVIAGRNVFKIFTLLEDRFEEASNLRVGKNLNLNFSCNDVAW 205
Query: 60 SCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD 119
+ +++ +AT ATNGAVV+WNL + SRSKQ+ VF DHKRTVNKVSFH E WLISGSQD
Sbjct: 206 NLNDDHILATAATNGAVVLWNLNRQSRSKQDHVFVDHKRTVNKVSFHMTEPMWLISGSQD 265
Query: 120 GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ 179
GTM+ FD+R +E+ K F+SNTESVRDV+F P P+ FA+VSENG +QQWD+R+PE+ F
Sbjct: 266 GTMKCFDLRIKEAIKTFYSNTESVRDVQFCPQQPHTFAAVSENGHVQQWDMRKPERYFQH 325
Query: 180 FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239
FTAHSGPIFACDWHPE WLATASRDKTIKVWDL KPS +Y+I+TIASV RIKWRPQ+K
Sbjct: 326 FTAHSGPIFACDWHPEATWLATASRDKTIKVWDLLGKPSCDYTIHTIASVGRIKWRPQKK 385
Query: 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
+H+ASC+LVVD S+NVWDIRRPYIP ASF EHKDV +G+AWRG+PQ F+++SR
Sbjct: 386 YHIASCALVVDCSINVWDIRRPYIPFASFNEHKDVPTGVAWRGNPQSFLSTSR 438
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307199296|gb|EFN79949.1| WD repeat-containing protein 24 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/289 (68%), Positives = 233/289 (80%), Gaps = 1/289 (0%)
Query: 5 SPVHKHGLKADNG-LAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE 63
P + L DN + RNVFKI + + F ET NLRVGKN+NLNFSCNDVAW+ I+
Sbjct: 12 GPANALALNKDNSQVVIAGRNVFKILTLLEDRFEETCNLRVGKNLNLNFSCNDVAWNLID 71
Query: 64 ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMR 123
++ +AT ATNGAVVVWNL + SRSKQE VF DHKRTVNKVSFH E WLISGSQDGTM+
Sbjct: 72 DHVLATAATNGAVVVWNLNRPSRSKQEHVFMDHKRTVNKVSFHTTEPMWLISGSQDGTMK 131
Query: 124 LFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183
FD+R +E+ K F SNTESVRDV+F PH + FA+VSENG +QQWD+RRP++ F FTAH
Sbjct: 132 CFDLRTKEAVKTFLSNTESVRDVQFCPHQLHMFAAVSENGHVQQWDMRRPDRYFQHFTAH 191
Query: 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLA 243
SGPIFACDWHPE WLATASRDKTIKVWDLS KPS +Y+I+TIASV RIKWRPQ+K+H+A
Sbjct: 192 SGPIFACDWHPESIWLATASRDKTIKVWDLSAKPSCDYTIHTIASVGRIKWRPQKKYHIA 251
Query: 244 SCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
SC+LVVD S+NVWDIRRPYIP ASF EHKD+ +G+AWRG Q F+++SR
Sbjct: 252 SCALVVDCSINVWDIRRPYIPFASFNEHKDIPTGVAWRGSSQSFLSTSR 300
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322796275|gb|EFZ18851.1| hypothetical protein SINV_80416 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/293 (66%), Positives = 235/293 (80%), Gaps = 1/293 (0%)
Query: 1 MAYLSPVHKHGLKADNG-LAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAW 59
+A P + L DN + RNVFKIF + + F E NLRVGKN+NLNFSCNDVAW
Sbjct: 8 VAQEGPANALALNKDNSQVVIAGRNVFKIFTLLEDRFEEACNLRVGKNLNLNFSCNDVAW 67
Query: 60 SCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD 119
+ +++ +AT ATNGAVV+WNL + SRSKQ+ VF DHKRTVNKVSFH E WLISGSQD
Sbjct: 68 NLNDDHILATAATNGAVVLWNLNRQSRSKQDHVFVDHKRTVNKVSFHMTEPMWLISGSQD 127
Query: 120 GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ 179
GTM+ FD+R +E+ K F+SNTESVRDV+F P P+ FA+VSENG +QQWD+R+PE+ F
Sbjct: 128 GTMKCFDLRIKEAIKTFYSNTESVRDVQFCPQQPHTFAAVSENGHVQQWDMRKPERYFQH 187
Query: 180 FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239
FTAHSGPIFACDWHPE WLATASRDKTIKVWDLS KPS +Y I+TIASV RIKWRPQ+K
Sbjct: 188 FTAHSGPIFACDWHPETTWLATASRDKTIKVWDLSGKPSCDYIIHTIASVGRIKWRPQKK 247
Query: 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
+H+ASC+LVVD S+NVWDIRRP+IP ASF EHKDV +G+AWRG+ Q F+++SR
Sbjct: 248 YHIASCALVVDCSINVWDIRRPFIPFASFNEHKDVPTGVAWRGNSQSFLSTSR 300
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 330 | ||||||
| FB|FBgn0027518 | 776 | CG7609 [Drosophila melanogaste | 0.857 | 0.364 | 0.543 | 1.1e-85 | |
| ZFIN|ZDB-GENE-040426-2012 | 779 | wdr24 "WD repeat domain 24" [D | 0.830 | 0.351 | 0.543 | 9.1e-84 | |
| UNIPROTKB|F1MJS7 | 790 | WDR24 "Uncharacterized protein | 0.830 | 0.346 | 0.528 | 3.9e-83 | |
| UNIPROTKB|F1RG37 | 790 | WDR24 "Uncharacterized protein | 0.830 | 0.346 | 0.525 | 5e-83 | |
| MGI|MGI:2446285 | 790 | Wdr24 "WD repeat domain 24" [M | 0.830 | 0.346 | 0.525 | 5e-83 | |
| UNIPROTKB|G3V8L0 | 790 | Wdr24 "RCG32838" [Rattus norve | 0.830 | 0.346 | 0.525 | 5e-83 | |
| UNIPROTKB|Q96S15 | 920 | WDR24 "WD repeat-containing pr | 0.469 | 0.168 | 0.522 | 2.3e-79 | |
| UNIPROTKB|I3LF05 | 928 | WDR24 "Uncharacterized protein | 0.475 | 0.169 | 0.515 | 2.4e-79 | |
| UNIPROTKB|Q5ZMV9 | 705 | WDR24 "WD repeat-containing pr | 0.712 | 0.333 | 0.527 | 4.3e-70 | |
| DICTYBASE|DDB_G0287817 | 1023 | wdr24 "WD40 repeat-containing | 0.818 | 0.263 | 0.462 | 7.1e-65 |
| FB|FBgn0027518 CG7609 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 155/285 (54%), Positives = 210/285 (73%)
Query: 13 KADNGLAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT 72
K +N +A R++ K++ I F E+ N+R GKN NL++S NDVAWS ++ N +AT AT
Sbjct: 28 KDNNQIALAGRSLLKVYSINSNGFTESCNMR-GKNQNLSYSANDVAWSTLDSNLLATAAT 86
Query: 73 NGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132
NG V VW+L + R KQ V+N+H+RT + V+FH E N LISGSQDGT++ FDIR +S
Sbjct: 87 NGVVSVWDLSKFGRQKQLLVYNEHERTAHTVTFHSSEPNILISGSQDGTIKCFDIRSDKS 146
Query: 133 TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDW 192
+ N+ESVRDV+F+PH+ F++VSENGT+Q WD+R+ +KC QFTAH GP++ CDW
Sbjct: 147 INTYFCNSESVRDVKFSPHTQNIFSAVSENGTVQLWDMRKWDKCMVQFTAHYGPVYTCDW 206
Query: 193 HPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSS 252
HP WLAT SRDK IKVW++ +P LE++I+TIA V R+KWRP+R +H+ASC+LVVD S
Sbjct: 207 HPTRNWLATGSRDKQIKVWNMDGRPGLEHTIHTIAVVGRVKWRPERTYHIASCALVVDYS 266
Query: 253 VNVWDIRRPYIPLASFTEHKDVVSGLAWRG-DPQLFIASSRVSII 296
V+VWDIRRPYIP ASF EH +V +G+AW+G D ++ S+ S I
Sbjct: 267 VHVWDIRRPYIPFASFNEHTNVTTGIAWQGSDSHCLLSISKDSTI 311
|
|
| ZFIN|ZDB-GENE-040426-2012 wdr24 "WD repeat domain 24" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 151/278 (54%), Positives = 202/278 (72%)
Query: 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82
RN+FKI+ +++ FVE NLRVG+ +LNFSC DV W +EEN +AT ATNGAVV WNL
Sbjct: 40 RNIFKIYGLEEDGFVERLNLRVGRKPSLNFSCADVMWHQMEENLLATAATNGAVVTWNLS 99
Query: 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES 142
+ R+KQE++F +HKRTVNKV FH E N L+SGSQDG M+ FD+R +ES F +ES
Sbjct: 100 RPCRNKQEQLFTEHKRTVNKVCFHPTEVNMLLSGSQDGFMKCFDLRKKESVSTFSGQSES 159
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLAT 201
VRDV+F+ + FA+ ENG +Q WD+RRP++ FTAH+GP+F CDWHPE WLAT
Sbjct: 160 VRDVQFSMKDYFTFAASFENGNVQLWDIRRPDRYERMFTAHTGPVFCCDWHPEDRGWLAT 219
Query: 202 ASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260
RDK +KVWD+S E Y + T ASV+R+KWRP+R++HLA+CS++VD ++ VWD+RR
Sbjct: 220 GGRDKMVKVWDMSTNRVKEIYCVQTFASVARVKWRPERRYHLATCSMMVDHNIYVWDVRR 279
Query: 261 PYIPLASFTEHKDVVSGLAWRG--DPQLFIASSRVSII 296
P+IP A+F EHKDV +G+ WR DP ++ S+ S +
Sbjct: 280 PFIPFATFEEHKDVTTGIVWRHQHDPYFLLSGSKDSTL 317
|
|
| UNIPROTKB|F1MJS7 WDR24 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 147/278 (52%), Positives = 205/278 (73%)
Query: 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82
R++FKI+ I++ +FVE NLRVG+ +LN SC DV W ++EN +AT ATNG VV WNLG
Sbjct: 46 RSIFKIYAIEEEQFVEKLNLRVGRKPSLNLSCADVVWHQMDENLLATAATNGVVVTWNLG 105
Query: 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES 142
+ SR+KQ+++F +HKRTVNKV FH E++ L+SGSQDG M+ FD+R ++S F +ES
Sbjct: 106 RPSRNKQDQLFTEHKRTVNKVCFHPTEAHVLLSGSQDGFMKCFDLRRKDSVSTFSGQSES 165
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLAT 201
VRDV+F+ + FAS ENG +Q WD+RRP++C FTAH+GP+F CDWHPE WLAT
Sbjct: 166 VRDVQFSIRDYFTFASTFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGWLAT 225
Query: 202 ASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260
RDK +KVWD++ + E + + TIASV+R+KWRP+ + HLA+CS++VD +V VWD+RR
Sbjct: 226 GGRDKMVKVWDMATHRAKEVHCVQTIASVARVKWRPECRHHLATCSMMVDHNVYVWDVRR 285
Query: 261 PYIPLASFTEHKDVVSGLAWRG--DPQLFIASSRVSII 296
P++P A F EH+DV +G+AWR DP ++ S+ S +
Sbjct: 286 PFVPAAMFEEHRDVTTGIAWRHPHDPSFLLSGSKDSTL 323
|
|
| UNIPROTKB|F1RG37 WDR24 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 146/278 (52%), Positives = 205/278 (73%)
Query: 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82
R++FKI+ I++ +FVE NLRVG+ +LN SC DV W ++EN +AT ATNG VV WNLG
Sbjct: 46 RSIFKIYAIEEEQFVEKLNLRVGRKPSLNLSCADVVWHQMDENLLATAATNGVVVTWNLG 105
Query: 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES 142
+ SR+KQ+++F +HKRTVNKV FH E++ L+SGSQDG M+ FD+R ++S F +ES
Sbjct: 106 RPSRNKQDQLFTEHKRTVNKVCFHPTEAHVLLSGSQDGFMKCFDLRRKDSVSTFSGQSES 165
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLAT 201
VRDV+F+ + FAS ENG +Q WD+RRP++C FTAH+GP+F CDWHPE WLAT
Sbjct: 166 VRDVQFSIRDYFTFASTFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGWLAT 225
Query: 202 ASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260
RDK +KVWD++ + E + + TIASV+R+KWRP+ + HLA+CS++VD ++ VWD+RR
Sbjct: 226 GGRDKMVKVWDMTTHRAKEVHCVQTIASVARVKWRPECRHHLATCSMMVDHNIYVWDVRR 285
Query: 261 PYIPLASFTEHKDVVSGLAWRG--DPQLFIASSRVSII 296
P++P A F EH+DV +G+AWR DP ++ S+ S +
Sbjct: 286 PFVPAAMFEEHRDVTTGIAWRHPHDPSFLLSGSKDSTL 323
|
|
| MGI|MGI:2446285 Wdr24 "WD repeat domain 24" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 146/278 (52%), Positives = 205/278 (73%)
Query: 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82
R++FKI+ I++ +FVE NLRVG+ +LN SC DV W ++EN +AT ATNG VV WNLG
Sbjct: 46 RSIFKIYAIEEEQFVEKLNLRVGRKPSLNLSCADVVWHQMDENLLATAATNGVVVTWNLG 105
Query: 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES 142
+ SR+KQ+++F +HKRTVNKV FH E++ L+SGSQDG M+ FD+R ++S F +ES
Sbjct: 106 RPSRNKQDQLFTEHKRTVNKVCFHPTEAHVLLSGSQDGFMKCFDLRRKDSVSTFSGQSES 165
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLAT 201
VRDV+F+ + FAS ENG +Q WD+RRP++C FTAH+GP+F CDWHPE WLAT
Sbjct: 166 VRDVQFSIRDYFTFASTFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGWLAT 225
Query: 202 ASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260
RDK +KVWD++ + E + + TIASV+R+KWRP+ + HLA+CS++VD ++ VWD+RR
Sbjct: 226 GGRDKMVKVWDMTTHRAKEIHCVQTIASVARVKWRPECRHHLATCSMMVDHNIYVWDVRR 285
Query: 261 PYIPLASFTEHKDVVSGLAWRG--DPQLFIASSRVSII 296
P++P A F EH+DV +G+AWR DP ++ S+ S +
Sbjct: 286 PFVPAAMFEEHRDVTTGIAWRHPHDPSFLLSGSKDSTL 323
|
|
| UNIPROTKB|G3V8L0 Wdr24 "RCG32838" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 146/278 (52%), Positives = 205/278 (73%)
Query: 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82
R++FKI+ I++ +FVE NLRVG+ +LN SC DV W ++EN +AT ATNG VV WNLG
Sbjct: 46 RSIFKIYAIEEEQFVEKLNLRVGRKPSLNLSCADVVWHQMDENLLATAATNGVVVTWNLG 105
Query: 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES 142
+ SR+KQ+++F +HKRTVNKV FH E++ L+SGSQDG M+ FD+R ++S F +ES
Sbjct: 106 RPSRNKQDQLFTEHKRTVNKVCFHPTEAHVLLSGSQDGFMKCFDLRRKDSVSTFSGQSES 165
Query: 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLAT 201
VRDV+F+ + FAS ENG +Q WD+RRP++C FTAH+GP+F CDWHPE WLAT
Sbjct: 166 VRDVQFSIRDYFTFASTFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGWLAT 225
Query: 202 ASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260
RDK +KVWD++ + E + + TIASV+R+KWRP+ + HLA+CS++VD ++ VWD+RR
Sbjct: 226 GGRDKMVKVWDMTTHRAKEIHCVQTIASVARVKWRPECRHHLATCSMMVDHNIYVWDVRR 285
Query: 261 PYIPLASFTEHKDVVSGLAWRG--DPQLFIASSRVSII 296
P++P A F EH+DV +G+AWR DP ++ S+ S +
Sbjct: 286 PFVPAAMFEEHRDVTTGIAWRHPHDPSFLLSGSKDSTL 323
|
|
| UNIPROTKB|Q96S15 WDR24 "WD repeat-containing protein 24" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 2.3e-79, Sum P(2) = 2.3e-79
Identities = 83/159 (52%), Positives = 117/159 (73%)
Query: 140 TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAW 198
+ESVRDV+F+ + FAS ENG +Q WD+RRP++C FTAH+GP+F CDWHPE W
Sbjct: 293 SESVRDVQFSIRDYFTFASTFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGW 352
Query: 199 LATASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257
LAT RDK +KVWD++ + E + + TIASV+R+KWRP+ + HLA+CS++VD ++ VWD
Sbjct: 353 LATGGRDKMVKVWDMTTHRAKEMHCVQTIASVARVKWRPECRHHLATCSMMVDHNIYVWD 412
Query: 258 IRRPYIPLASFTEHKDVVSGLAWRG--DPQLFIASSRVS 294
+RRP++P A F EH+DV +G+AWR DP ++ S+ S
Sbjct: 413 VRRPFVPAAMFEEHRDVTTGIAWRHPHDPSFLLSGSKDS 451
|
|
| UNIPROTKB|I3LF05 WDR24 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 2.4e-79, Sum P(2) = 2.4e-79
Identities = 83/161 (51%), Positives = 118/161 (73%)
Query: 140 TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAW 198
+ESVRDV+F+ + FAS ENG +Q WD+RRP++C FTAH+GP+F CDWHPE W
Sbjct: 301 SESVRDVQFSIRDYFTFASTFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGW 360
Query: 199 LATASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257
LAT RDK +KVWD++ + E + + TIASV+R+KWRP+ + HLA+CS++VD ++ VWD
Sbjct: 361 LATGGRDKMVKVWDMTTHRAKEVHCVQTIASVARVKWRPECRHHLATCSMMVDHNIYVWD 420
Query: 258 IRRPYIPLASFTEHKDVVSGLAWRG--DPQLFIASSRVSII 296
+RRP++P A F EH+DV +G+AWR DP ++ S+ S +
Sbjct: 421 VRRPFVPAAMFEEHRDVTTGIAWRHPHDPSFLLSGSKDSTL 461
|
|
| UNIPROTKB|Q5ZMV9 WDR24 "WD repeat-containing protein 24" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 126/239 (52%), Positives = 173/239 (72%)
Query: 62 IEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGT 121
++EN +AT ATNG VV WNLG+ SR+KQ+++F +HKRTVNKV FH E L+SGSQDG
Sbjct: 1 MDENLLATAATNGVVVTWNLGKPSRNKQDQLFTEHKRTVNKVCFHPTEVYMLLSGSQDGY 60
Query: 122 MRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT 181
M+ FD+R ++S F +ESVRDV+F+ + FA+ ENG +Q WD+RRP++ FT
Sbjct: 61 MKCFDLRKKDSVSTFSGQSESVRDVQFSIRDYFTFAATFENGNVQLWDIRRPDRYERMFT 120
Query: 182 AHSGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRK 239
AH+GP+F CDWHPE WLAT RDK +KVWD++ + E Y + TIASV+R+KWRP+ K
Sbjct: 121 AHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMNTTRAKEIYCVQTIASVARVKWRPECK 180
Query: 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG--DPQLFIASSRVSII 296
H+A+CS++VD ++ VWD+RRP+IP A F EHKDV +G+ WR DP ++ S+ S +
Sbjct: 181 HHIATCSMMVDHNIYVWDVRRPFIPSAMFEEHKDVTTGIVWRHLHDPYFLLSGSKDSTL 239
|
|
| DICTYBASE|DDB_G0287817 wdr24 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 666 (239.5 bits), Expect = 7.1e-65, P = 7.1e-65
Identities = 129/279 (46%), Positives = 187/279 (67%)
Query: 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWS-CIEENH---IATGATNGAVVV 78
R++ KI +++ EF T NLR GK +LN++ ND W + EN+ IAT ATNGAVV+
Sbjct: 38 RDIVKIVSVQNNEFKVTSNLRAGKTQSLNYTGNDCCWHPSLLENYRFLIATAATNGAVVI 97
Query: 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR-CQESTKI-F 136
WN + ERVF DH R VNK+++H + + +++GSQD T+R++DIR ++KI F
Sbjct: 98 WNTVREGSKSVERVFTDHSRAVNKLAWHPEKLDCILTGSQDNTLRMWDIRDSANASKITF 157
Query: 137 HSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH 196
+ES+RDV+FNP FA+ +NGTIQ WD+R+P + T+H G + DWHPE
Sbjct: 158 SPKSESIRDVQFNPSQANQFAAAFDNGTIQLWDIRKPTIAVEKITSHQGLVLTIDWHPEE 217
Query: 197 A-WLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNV 255
+A+ RD+ I+VWD S SL +++TI+SVSRIKWRP K+H+ASCS +VD +++
Sbjct: 218 KNIIASGGRDRAIRVWDFSNGKSLN-NVSTISSVSRIKWRPGNKWHIASCSSIVDFQIHI 276
Query: 256 WDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294
WD+++PYIPL SFT+H+DV +GL W+ P I+ S+ S
Sbjct: 277 WDVKKPYIPLFSFTDHRDVPTGLIWKS-PSSLISCSKDS 314
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5ZMV9 | WDR24_CHICK | No assigned EC number | 0.5271 | 0.7121 | 0.3333 | yes | N/A |
| Q7ZVL2 | WDR24_DANRE | No assigned EC number | 0.5412 | 0.8333 | 0.3530 | yes | N/A |
| Q8CFJ9 | WDR24_MOUSE | No assigned EC number | 0.5232 | 0.8333 | 0.3481 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 330 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-35 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-33 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-27 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-15 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-13 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-09 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 9e-09 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 1e-07 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 5e-06 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 2e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 2e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 3e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.001 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 2e-35
Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 17/240 (7%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
DVA S +A+G+++ + +W+L + R H V+ V+F + L
Sbjct: 55 RDVAASADGTY-LASGSSDKTIRLWDLET---GECVRTLTGHTSYVSSVAFS-PDGRILS 109
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
S S+D T++++D+ + +T+ V V F+P + AS S++GTI+ WD+R
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV-ASSSQDGTIKLWDLR-TG 167
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKP---SLEYSINTIASVSR 231
KC T H+G + + + P+ L ++S D TIK+WDLS +L N + SV+
Sbjct: 168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA- 226
Query: 232 IKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
+ P LAS S D ++ VWD+R + + + H + V+ LAW D + + S
Sbjct: 227 --FSPDGYL-LASGS--EDGTIRVWDLRTGE-CVQTLSGHTNSVTSLAWSPDGKRLASGS 280
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 8e-35
Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 12/229 (5%)
Query: 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRL 124
+ATG+ +G + VW+L + R H V V+ + +L SGS D T+RL
Sbjct: 22 KLLATGSGDGTIKVWDL---ETGELLRTLKGHTGPVRDVAA-SADGTYLASGSSDKTIRL 77
Query: 125 FDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHS 184
+D+ E + +T V V F+P +S S + TI+ WDV KC H+
Sbjct: 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS-SRDKTIKVWDV-ETGKCLTTLRGHT 135
Query: 185 GPIFACDWHPEHAWLATASRDKTIKVWDL-SIKPSLEYSINTIASVSRIKWRPQRKFHLA 243
+ + + P+ ++A++S+D TIK+WDL + K + +T V+ + + P + L+
Sbjct: 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT-GEVNSVAFSPDGEKLLS 194
Query: 244 SCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
S S D ++ +WD+ L + H++ V+ +A+ D L + S
Sbjct: 195 SSS---DGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSE 239
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 3e-33
Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 9/207 (4%)
Query: 91 RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150
R H V V+F L +GS DGT++++D+ E + +T VRDV +
Sbjct: 3 RTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210
Y AS S + TI+ WD+ E C T H+ + + + P+ L+++SRDKTIKV
Sbjct: 62 DGTY-LASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 211 WDLSIKPSLEYSINTI-ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT 269
WD+ ++ V+ + + P F +AS S D ++ +WD+R +A+ T
Sbjct: 120 WDV-ETGKCLTTLRGHTDWVNSVAFSPDGTF-VASSSQ--DGTIKLWDLRTGK-CVATLT 174
Query: 270 EHKDVVSGLAWRGDPQLFIASSRVSII 296
H V+ +A+ D + ++SS I
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTI 201
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-27
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNW 112
N VA+S + +A+ + +G + +W+L H VN V+F +
Sbjct: 137 WVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKC---VATLTGHTGEVNSVAFSP-DGEK 191
Query: 113 LISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR 172
L+S S DGT++L+D+ + + V V F+P Y AS SE+GTI+ WD+R
Sbjct: 192 LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLR- 249
Query: 173 PEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
+C + H+ + + W P+ LA+ S D TI++WD
Sbjct: 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (251), Expect = 6e-24
Identities = 70/283 (24%), Positives = 129/283 (45%), Gaps = 16/283 (5%)
Query: 55 NDVAWSCIEENHIATGAT--NGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNW 112
+ +A S + N I ++ +G V +W+L + K R H +V ++F
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLS--TPGKLIRTLEGHSESVTSLAFSPDGKLL 170
Query: 113 LISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR 172
S DGT++L+D+R + +T+ V + F+P AS S +GTI+ WD+
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230
Query: 173 PEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSR 231
+ + HS + + + P+ + LA+ S D TI++WDL SL +++ +SV
Sbjct: 231 GKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289
Query: 232 IKWRPQRKFHLASCSLVVDSSVNVWDIRRPY-IPLASFTEHKDVVSGLAWRGDPQLFIAS 290
+ + P K LAS S D +V +WD+ + + H+ VS L++ D L ++
Sbjct: 290 VAFSPDGKL-LASGS--SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346
Query: 291 S------RVSIIPRAKNIKIFIASSRVSIIPRAENIKIFITSS 327
R+ + K +K S V + + + ++ + S
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGS 389
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.1 bits (227), Expect = 9e-21
Identities = 55/253 (21%), Positives = 102/253 (40%), Gaps = 10/253 (3%)
Query: 37 VETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDH 96
+ T + + S +A+S + + + +G + +W+L K H
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT---GKPLSTLAGH 197
Query: 97 KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAF 156
V+ ++F + SGS DGT+RL+D+ + + S F+P
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSL-L 256
Query: 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS-- 214
AS S +GTI+ WD+R + HS + + + P+ LA+ S D T+++WDL
Sbjct: 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316
Query: 215 IKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDV 274
S VS + + P ++ S D ++ +WD+R E
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD--DGTIRLWDLRTGKPLK--TLEGHSN 372
Query: 275 VSGLAWRGDPQLF 287
V +++ D ++
Sbjct: 373 VLSVSFSPDGRVV 385
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (209), Expect = 2e-18
Identities = 64/263 (24%), Positives = 121/263 (46%), Gaps = 14/263 (5%)
Query: 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNW 112
+ +A+S IA+G+++G + +W+L + + + V+ S + +
Sbjct: 200 PVSSLAFSPDGGLLIASGSSDGTIRLWDL-STGKLLRSTLSGHSDSVVSSFSP---DGSL 255
Query: 113 LISGSQDGTMRLFDIR-CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR 171
L SGS DGT+RL+D+R + ++ SV V F+P AS S +GT++ WD+
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGTVRLWDLE 314
Query: 172 RPEK-CFYQFTAHSGPIFACDWHPEHAWLATA-SRDKTIKVWDLSIKPSLEYSINTIASV 229
+ H GP+ + + P+ + L + S D TI++WDL ++ ++V
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR-TGKPLKTLEGHSNV 373
Query: 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIA 289
+ + P ++S S D +V +WD+ + L + H V+ L + D + +
Sbjct: 374 LSVSFSPD-GRVVSSGS--TDGTVRLWDLSTGSL-LRNLDGHTSRVTSLDFSPDGKSLAS 429
Query: 290 SSRVSIIPRAKNIKIFIASSRVS 312
S + I R ++K + S S
Sbjct: 430 GSSDNTI-RLWDLKTSLKSVSFS 451
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.1 bits (188), Expect = 1e-15
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 9/216 (4%)
Query: 86 RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST--KIFHSNTESV 143
+ H+ ++ ++F + L+SGS DGT++L+D+ E + + SV
Sbjct: 54 PDLSSLLLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSV 112
Query: 144 RDVEFNPHS--PYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLAT 201
+ + AS S +GT++ WD+ P K HS + + + P+ LA+
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172
Query: 202 ASR-DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260
S D TIK+WDL L VS + + P +AS S D ++ +WD+
Sbjct: 173 GSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS--DGTIRLWDLST 230
Query: 261 PYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSII 296
+ ++ + H D V ++ D L + S I
Sbjct: 231 GKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGTI 265
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.1 bits (170), Expect = 2e-13
Identities = 61/246 (24%), Positives = 117/246 (47%), Gaps = 13/246 (5%)
Query: 37 VETHNLRVGKNINLNFSCNDVAWSCI---EENHIATGATNGAVVVWNLGQISRSKQERVF 93
+ +L GK + S + + + + +A+G+++G + +W+L S S R
Sbjct: 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDL--RSSSSLLRTL 280
Query: 94 NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE--STKIFHSNTESVRDVEFNPH 151
+ H +V V+F + L SGS DGT+RL+D+ + S+ + V + F+P
Sbjct: 281 SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339
Query: 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211
+ S++GTI+ WD+R K HS + + + P+ +++ S D T+++W
Sbjct: 340 GSLLVSGGSDDGTIRLWDLRT-GKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLW 397
Query: 212 DLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH 271
DLS L + V+ + + P K LAS S D+++ +WD++ ++ +
Sbjct: 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGK-SLASGSS--DNTIRLWDLKTSLKSVSFSPDG 454
Query: 272 KDVVSG 277
K + S
Sbjct: 455 KVLASK 460
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-09
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 174 EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
K H+GP+ + + P+ LA+ S D T++VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (135), Expect = 6e-09
Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 9/165 (5%)
Query: 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFAC 190
+ +++ S + S ++ + + D+ H I +
Sbjct: 17 KKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL-----LRGHEDSITSI 71
Query: 191 DWHPEHAWLATASRDKTIKVWDLSIKPSL--EYSINTIASVSRIKWR-PQRKFHLASCSL 247
+ P+ L + S D TIK+WDL L +SVS++ P L + S
Sbjct: 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131
Query: 248 VVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
+D +V +WD+ P + + H + V+ LA+ D +L + S
Sbjct: 132 -LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS 175
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 9e-09
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 173 PEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
+ H+GP+ + + P+ +LA+ S D TIK+WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (126), Expect = 1e-07
Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 5/162 (3%)
Query: 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISG 116
+ W+ ++ +A+ G V VW+ ++RS+ +H++ V + + + L SG
Sbjct: 538 ICWNSYIKSQVASSNFEGVVQVWD---VARSQLVTEMKEHEKRVWSIDYSSADPTLLASG 594
Query: 117 SQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC 176
S DG+++L+ I S + ++ V+F S + A S + + +D+R P+
Sbjct: 595 SDDGSVKLWSINQGVSIGTIKTKA-NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP 653
Query: 177 FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS 218
HS + + + + L ++S D T+K+WDLS+ S
Sbjct: 654 LCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMSIS 694
|
Length = 793 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 5e-06
Identities = 47/162 (29%), Positives = 63/162 (38%), Gaps = 43/162 (26%)
Query: 145 DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR 204
DV FNP P + SE+GTI W + PE+ Q S PI H
Sbjct: 80 DVAFNPFDPQKLFTASEDGTIMGWGI--PEEGLTQNI--SDPIVHLQGH----------- 124
Query: 205 DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP 264
T KV +S PS ++N +AS D VNVWD+ R
Sbjct: 125 --TKKVGIVSFHPS---AMNVLASAG------------------ADMVVNVWDVERG-KA 160
Query: 265 LASFTEHKDVVSGLAWRGDPQLFIASSR---VSII-PRAKNI 302
+ H D ++ L W D L +S+ ++II PR I
Sbjct: 161 VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202
|
Length = 493 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 148 FNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRDK 206
+N + AS + G +Q WDV R + + H +++ D+ + LA+ S D
Sbjct: 540 WNSYIKSQVASSNFEGVVQVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598
Query: 207 TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA 266
++K+W ++ S+ +I T A++ +++ + LA S D V +D+R P +PL
Sbjct: 599 SVKLWSINQGVSIG-TIKTKANICCVQFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLC 655
Query: 267 SFTEHKDVVS 276
+ H VS
Sbjct: 656 TMIGHSKTVS 665
|
Length = 793 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 170 VRRPEKCFYQFTAHSGPIFACDWHPEHA-WLATASRDKTIKVWDLSIKPSLEYSINTIA- 227
+R+P + H+ I ++P + LA+ S D TI+VW++ P + S+ I
Sbjct: 62 MRKPP--VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEI---PHNDESVKEIKD 116
Query: 228 ----------SVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258
+S I W P + + CS DS VN+WDI
Sbjct: 117 PQCILKGHKKKISIIDWNPMNYYIM--CSSGFDSFVNIWDI 155
|
Length = 568 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 138 SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ-------FTAHSGPIFAC 190
+T S+ D++FNP AS SE+ TI+ W++ ++ + H I
Sbjct: 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131
Query: 191 DWHPEHAW-LATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKW 234
DW+P + + + ++ D + +WD+ + IN +S +KW
Sbjct: 132 DWNPMNYYIMCSSGFDSFVNIWDIE-NEKRAFQINMPKKLSSLKW 175
|
Length = 568 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.001
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 88 KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126
K R H V V+F + N L SGS DGT+R++D
Sbjct: 2 KLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.4 bits (82), Expect = 0.001
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 88 KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126
+ + H V V+F + +L SGS DGT++L+D
Sbjct: 3 ELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0277|consensus | 311 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0269|consensus | 839 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0313|consensus | 423 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0305|consensus | 484 | 100.0 | ||
| KOG0275|consensus | 508 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0643|consensus | 327 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0310|consensus | 487 | 100.0 | ||
| KOG1407|consensus | 313 | 100.0 | ||
| KOG1446|consensus | 311 | 100.0 | ||
| KOG0264|consensus | 422 | 100.0 | ||
| KOG0640|consensus | 430 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0264|consensus | 422 | 100.0 | ||
| KOG0283|consensus | 712 | 100.0 | ||
| KOG0277|consensus | 311 | 100.0 | ||
| KOG0278|consensus | 334 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0973|consensus | 942 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0772|consensus | 641 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0288|consensus | 459 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0300|consensus | 481 | 100.0 | ||
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0289|consensus | 506 | 100.0 | ||
| KOG0310|consensus | 487 | 100.0 | ||
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG0274|consensus | 537 | 100.0 | ||
| KOG0268|consensus | 433 | 100.0 | ||
| KOG0641|consensus | 350 | 100.0 | ||
| KOG0299|consensus | 479 | 100.0 | ||
| KOG2096|consensus | 420 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG4283|consensus | 397 | 100.0 | ||
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG0301|consensus | 745 | 100.0 | ||
| KOG0278|consensus | 334 | 100.0 | ||
| KOG0647|consensus | 347 | 100.0 | ||
| KOG1446|consensus | 311 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| KOG0305|consensus | 484 | 100.0 | ||
| KOG1407|consensus | 313 | 100.0 | ||
| KOG2055|consensus | 514 | 100.0 | ||
| KOG0639|consensus | 705 | 100.0 | ||
| KOG0275|consensus | 508 | 99.98 | ||
| KOG0313|consensus | 423 | 99.98 | ||
| KOG0308|consensus | 735 | 99.97 | ||
| KOG1332|consensus | 299 | 99.97 | ||
| KOG0289|consensus | 506 | 99.97 | ||
| KOG0294|consensus | 362 | 99.97 | ||
| KOG1036|consensus | 323 | 99.97 | ||
| KOG1408|consensus | 1080 | 99.97 | ||
| KOG0647|consensus | 347 | 99.97 | ||
| KOG0274|consensus | 537 | 99.97 | ||
| KOG1063|consensus | 764 | 99.97 | ||
| KOG0772|consensus | 641 | 99.97 | ||
| KOG0294|consensus | 362 | 99.97 | ||
| KOG0308|consensus | 735 | 99.97 | ||
| KOG0299|consensus | 479 | 99.97 | ||
| KOG1274|consensus | 933 | 99.97 | ||
| KOG0302|consensus | 440 | 99.97 | ||
| KOG0973|consensus | 942 | 99.97 | ||
| KOG1036|consensus | 323 | 99.97 | ||
| KOG0643|consensus | 327 | 99.97 | ||
| KOG1273|consensus | 405 | 99.97 | ||
| KOG4328|consensus | 498 | 99.97 | ||
| KOG0268|consensus | 433 | 99.96 | ||
| KOG0321|consensus | 720 | 99.96 | ||
| KOG0641|consensus | 350 | 99.96 | ||
| KOG0640|consensus | 430 | 99.96 | ||
| KOG4378|consensus | 673 | 99.96 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.96 | |
| KOG0646|consensus | 476 | 99.96 | ||
| KOG2106|consensus | 626 | 99.96 | ||
| KOG0283|consensus | 712 | 99.96 | ||
| KOG1332|consensus | 299 | 99.96 | ||
| KOG0270|consensus | 463 | 99.96 | ||
| KOG0646|consensus | 476 | 99.96 | ||
| KOG2445|consensus | 361 | 99.96 | ||
| KOG0650|consensus | 733 | 99.96 | ||
| KOG0302|consensus | 440 | 99.96 | ||
| KOG0288|consensus | 459 | 99.96 | ||
| KOG0270|consensus | 463 | 99.96 | ||
| KOG2048|consensus | 691 | 99.96 | ||
| KOG1539|consensus | 910 | 99.96 | ||
| KOG0307|consensus | 1049 | 99.96 | ||
| KOG0267|consensus | 825 | 99.96 | ||
| KOG1274|consensus | 933 | 99.96 | ||
| KOG0639|consensus | 705 | 99.96 | ||
| KOG1539|consensus | 910 | 99.96 | ||
| KOG2106|consensus | 626 | 99.96 | ||
| KOG0269|consensus | 839 | 99.96 | ||
| KOG4283|consensus | 397 | 99.95 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG0301|consensus | 745 | 99.95 | ||
| KOG1034|consensus | 385 | 99.95 | ||
| KOG0267|consensus | 825 | 99.95 | ||
| KOG2048|consensus | 691 | 99.95 | ||
| KOG0290|consensus | 364 | 99.95 | ||
| KOG1445|consensus | 1012 | 99.95 | ||
| KOG0300|consensus | 481 | 99.95 | ||
| KOG0307|consensus | 1049 | 99.94 | ||
| KOG4328|consensus | 498 | 99.94 | ||
| KOG1273|consensus | 405 | 99.94 | ||
| KOG1408|consensus | 1080 | 99.94 | ||
| KOG1063|consensus | 764 | 99.94 | ||
| KOG2445|consensus | 361 | 99.94 | ||
| KOG0290|consensus | 364 | 99.94 | ||
| KOG0321|consensus | 720 | 99.94 | ||
| KOG2919|consensus | 406 | 99.94 | ||
| KOG1188|consensus | 376 | 99.94 | ||
| KOG4378|consensus | 673 | 99.93 | ||
| KOG1587|consensus | 555 | 99.93 | ||
| KOG4227|consensus | 609 | 99.93 | ||
| KOG1009|consensus | 434 | 99.93 | ||
| KOG1524|consensus | 737 | 99.92 | ||
| KOG0303|consensus | 472 | 99.92 | ||
| KOG1538|consensus | 1081 | 99.92 | ||
| KOG1007|consensus | 370 | 99.92 | ||
| KOG0303|consensus | 472 | 99.92 | ||
| KOG2055|consensus | 514 | 99.92 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.92 | |
| KOG1007|consensus | 370 | 99.92 | ||
| KOG2096|consensus | 420 | 99.91 | ||
| KOG0650|consensus | 733 | 99.91 | ||
| KOG2919|consensus | 406 | 99.91 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.91 | |
| KOG0322|consensus | 323 | 99.9 | ||
| KOG1445|consensus | 1012 | 99.9 | ||
| KOG1034|consensus | 385 | 99.9 | ||
| KOG1517|consensus | 1387 | 99.9 | ||
| KOG0649|consensus | 325 | 99.89 | ||
| KOG0642|consensus | 577 | 99.88 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.88 | |
| KOG2110|consensus | 391 | 99.88 | ||
| KOG1523|consensus | 361 | 99.87 | ||
| KOG0649|consensus | 325 | 99.87 | ||
| KOG1587|consensus | 555 | 99.87 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.87 | |
| KOG1272|consensus | 545 | 99.87 | ||
| KOG0644|consensus | 1113 | 99.86 | ||
| KOG4497|consensus | 447 | 99.86 | ||
| KOG0771|consensus | 398 | 99.85 | ||
| KOG1963|consensus | 792 | 99.85 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.85 | |
| KOG1523|consensus | 361 | 99.85 | ||
| KOG1188|consensus | 376 | 99.84 | ||
| KOG2139|consensus | 445 | 99.84 | ||
| KOG1538|consensus | 1081 | 99.84 | ||
| KOG2139|consensus | 445 | 99.84 | ||
| KOG0642|consensus | 577 | 99.84 | ||
| KOG0771|consensus | 398 | 99.84 | ||
| KOG1310|consensus | 758 | 99.83 | ||
| KOG1009|consensus | 434 | 99.83 | ||
| KOG1963|consensus | 792 | 99.83 | ||
| KOG1334|consensus | 559 | 99.83 | ||
| KOG1524|consensus | 737 | 99.83 | ||
| KOG4227|consensus | 609 | 99.83 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.83 | |
| KOG2110|consensus | 391 | 99.83 | ||
| KOG2111|consensus | 346 | 99.83 | ||
| KOG2394|consensus | 636 | 99.82 | ||
| KOG1310|consensus | 758 | 99.82 | ||
| KOG2321|consensus | 703 | 99.81 | ||
| KOG1240|consensus | 1431 | 99.81 | ||
| KOG3881|consensus | 412 | 99.81 | ||
| KOG4497|consensus | 447 | 99.8 | ||
| KOG1517|consensus | 1387 | 99.8 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.8 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.79 | |
| KOG1272|consensus | 545 | 99.79 | ||
| KOG0644|consensus | 1113 | 99.78 | ||
| KOG0280|consensus | 339 | 99.78 | ||
| KOG2111|consensus | 346 | 99.78 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.78 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.77 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.76 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.76 | |
| KOG1240|consensus | 1431 | 99.76 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.76 | |
| KOG0322|consensus | 323 | 99.76 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.76 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG3881|consensus | 412 | 99.75 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.75 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.74 | |
| KOG2394|consensus | 636 | 99.73 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG1354|consensus | 433 | 99.73 | ||
| KOG1334|consensus | 559 | 99.72 | ||
| KOG0309|consensus | 1081 | 99.7 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.7 | |
| KOG2315|consensus | 566 | 99.7 | ||
| KOG1354|consensus | 433 | 99.69 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG0974|consensus | 967 | 99.66 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.66 | |
| KOG2314|consensus | 698 | 99.66 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.66 | |
| KOG1409|consensus | 404 | 99.66 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.66 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.65 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.65 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.61 | |
| KOG4547|consensus | 541 | 99.61 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.6 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.59 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG4547|consensus | 541 | 99.58 | ||
| KOG0280|consensus | 339 | 99.57 | ||
| KOG2315|consensus | 566 | 99.57 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.56 | |
| KOG0974|consensus | 967 | 99.55 | ||
| KOG2321|consensus | 703 | 99.55 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.54 | |
| KOG2314|consensus | 698 | 99.53 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG4532|consensus | 344 | 99.51 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.48 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.48 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.47 | |
| KOG1064|consensus | 2439 | 99.46 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.46 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.46 | |
| KOG2041|consensus | 1189 | 99.46 | ||
| KOG2041|consensus | 1189 | 99.46 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.42 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG1064|consensus | 2439 | 99.41 | ||
| KOG4714|consensus | 319 | 99.39 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.37 | |
| KOG4714|consensus | 319 | 99.37 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.37 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.36 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.35 | |
| KOG1409|consensus | 404 | 99.33 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.3 | |
| KOG3914|consensus | 390 | 99.3 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.29 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.29 | |
| KOG4532|consensus | 344 | 99.28 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.28 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.27 | |
| KOG1275|consensus | 1118 | 99.25 | ||
| KOG0309|consensus | 1081 | 99.24 | ||
| KOG4190|consensus | 1034 | 99.24 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.23 | |
| KOG1912|consensus | 1062 | 99.23 | ||
| KOG1645|consensus | 463 | 99.23 | ||
| KOG1912|consensus | 1062 | 99.2 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.2 | |
| KOG3914|consensus | 390 | 99.19 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.18 | |
| KOG4190|consensus | 1034 | 99.18 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.11 | |
| KOG1275|consensus | 1118 | 99.08 | ||
| KOG2066|consensus | 846 | 99.07 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.02 | |
| KOG2114|consensus | 933 | 99.01 | ||
| KOG1008|consensus | 783 | 99.01 | ||
| KOG2695|consensus | 425 | 99.01 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.99 | |
| KOG1832|consensus | 1516 | 98.98 | ||
| KOG1832|consensus | 1516 | 98.96 | ||
| KOG1920|consensus | 1265 | 98.96 | ||
| KOG0882|consensus | 558 | 98.96 | ||
| KOG1645|consensus | 463 | 98.96 | ||
| KOG2695|consensus | 425 | 98.95 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.92 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.91 | |
| KOG1920|consensus | 1265 | 98.9 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.9 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.88 | |
| KOG0882|consensus | 558 | 98.88 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.88 | |
| KOG3617|consensus | 1416 | 98.87 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.84 | |
| KOG2114|consensus | 933 | 98.82 | ||
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.79 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.79 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.78 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.76 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.75 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.75 | |
| KOG1008|consensus | 783 | 98.73 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.68 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.67 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.66 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.65 | |
| KOG2066|consensus | 846 | 98.63 | ||
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.62 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.54 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.53 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.52 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.51 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.5 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.49 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.49 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.47 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.46 | |
| KOG3621|consensus | 726 | 98.44 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.41 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.34 | |
| KOG3621|consensus | 726 | 98.34 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.33 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 98.33 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.31 | |
| KOG4649|consensus | 354 | 98.27 | ||
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.25 | |
| KOG4649|consensus | 354 | 98.22 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.19 | |
| KOG2395|consensus | 644 | 98.18 | ||
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.17 | |
| KOG3617|consensus | 1416 | 98.14 | ||
| KOG4640|consensus | 665 | 98.13 | ||
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.13 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.12 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.09 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.06 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 98.02 | |
| KOG4640|consensus | 665 | 97.99 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.91 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.85 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.8 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.8 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.79 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.79 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.76 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.72 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.67 | |
| KOG2444|consensus | 238 | 97.64 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.62 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.58 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.55 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.52 | |
| KOG2079|consensus | 1206 | 97.43 | ||
| KOG3630|consensus | 1405 | 97.41 | ||
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.37 | |
| KOG4441|consensus | 571 | 97.36 | ||
| PRK10115 | 686 | protease 2; Provisional | 97.34 | |
| KOG2444|consensus | 238 | 97.33 | ||
| KOG4441|consensus | 571 | 97.32 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.3 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.27 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.22 | |
| KOG2395|consensus | 644 | 97.22 | ||
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 97.2 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.14 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.09 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.07 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.06 | |
| KOG2377|consensus | 657 | 97.05 | ||
| KOG2377|consensus | 657 | 97.01 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.01 | |
| KOG2079|consensus | 1206 | 97.01 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.99 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.98 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.89 | |
| PRK10115 | 686 | protease 2; Provisional | 96.89 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.8 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.77 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.75 | |
| KOG2280|consensus | 829 | 96.73 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.67 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.62 | |
| KOG2280|consensus | 829 | 96.61 | ||
| KOG3630|consensus | 1405 | 96.58 | ||
| KOG2247|consensus | 615 | 96.57 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.53 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.51 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.42 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.35 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.32 | |
| KOG4499|consensus | 310 | 96.31 | ||
| KOG1916|consensus | 1283 | 96.28 | ||
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.99 | |
| KOG1897|consensus | 1096 | 95.99 | ||
| KOG4499|consensus | 310 | 95.96 | ||
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.82 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 95.76 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 95.76 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.76 | |
| KOG4460|consensus | 741 | 95.73 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.69 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.63 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.63 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.51 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.34 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.32 | |
| KOG1916|consensus | 1283 | 95.26 | ||
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 95.2 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.17 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 95.13 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.01 | |
| KOG1897|consensus | 1096 | 95.0 | ||
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.95 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.73 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.66 | |
| KOG2247|consensus | 615 | 94.56 | ||
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 94.49 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 94.48 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.38 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 94.37 | |
| KOG1900|consensus | 1311 | 94.34 | ||
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.32 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.19 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 94.17 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.13 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 94.09 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 93.78 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.67 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 93.59 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 93.36 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.26 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.11 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.1 | |
| KOG1898|consensus | 1205 | 93.1 | ||
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 93.07 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 92.95 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.83 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 92.75 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 92.5 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 92.47 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 92.18 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 92.16 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 91.89 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.84 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 91.78 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 91.47 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 91.42 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 91.28 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 91.26 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 91.22 | |
| KOG1896|consensus | 1366 | 91.17 | ||
| KOG4659|consensus | 1899 | 91.08 | ||
| KOG3616|consensus | 1636 | 90.8 | ||
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 90.68 | |
| KOG4460|consensus | 741 | 90.55 | ||
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 90.11 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 89.76 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 89.6 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 89.5 | |
| KOG1900|consensus | 1311 | 89.41 | ||
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 89.01 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 88.84 | |
| KOG1983|consensus | 993 | 88.77 | ||
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 87.72 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 87.32 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 87.32 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 87.09 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.01 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 86.85 | |
| KOG1983|consensus | 993 | 86.33 |
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-55 Score=334.62 Aligned_cols=283 Identities=22% Similarity=0.349 Sum_probs=252.8
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|.|++|+|+|..+++| |.++++||+.+.......+.|..- |.|++|+| ++..||+|+.||.|++|
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~W-------VlcvawsP-Dgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNW-------VLCVAWSP-DGKKIASGSKDGSIRLW 184 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccE-------EEEEEECC-CcchhhccccCCeEEEe
Confidence 599999999999999997777 999999999998777766666544 69999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEe----cCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHY----VESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~----~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
|..++ ......+.+|+..|++++|.| ...++|++++.||.++|||+..++++..+.+|..+|+|+.|-.+| +
T Consensus 185 dpktg--~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--l 260 (480)
T KOG0271|consen 185 DPKTG--QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--L 260 (480)
T ss_pred cCCCC--CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc--e
Confidence 98874 345567899999999999976 246789999999999999999999999999999999999998666 7
Q ss_pred EEEEecCCcEEEEecCCCc-------------------------------------------------------------
Q psy6213 156 FASVSENGTIQQWDVRRPE------------------------------------------------------------- 174 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~~------------------------------------------------------------- 174 (330)
+++|+.|++|++|+...+.
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 8899999999999865411
Q ss_pred -----------------cceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCC
Q psy6213 175 -----------------KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQ 237 (330)
Q Consensus 175 -----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 237 (330)
+++..+.+|..-|+.+.|+||++++++++.|..|++||.++++.+..+.+|-..|..++|+.|
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD 420 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC
Confidence 233445678888999999999999999999999999999999889999999999999999999
Q ss_pred CCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 238 RKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
.+ |+++++ .|.++++||+++.+. ...+.+|.+.|.++.|+|||+.+++|+.|..+++|+
T Consensus 421 sR-LlVS~S--kDsTLKvw~V~tkKl-~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 421 SR-LLVSGS--KDSTLKVWDVRTKKL-KQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cc-EEEEcC--CCceEEEEEeeeeee-cccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 98 577887 799999999999876 888999999999999999999999999999999995
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-53 Score=327.20 Aligned_cols=282 Identities=24% Similarity=0.393 Sum_probs=262.3
Q ss_pred CcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc-CCcEEEEEcCCCcEEEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI-EENHIATGATNGAVVVW 79 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw 79 (330)
-..+|..+.|++|++.+++| +|.+++|+..+......+..|... +.++.|+|. ++..+|+|+.||++++|
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~-------v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR-------VGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccc-------eeeEEEccCCCccceeeeccCCceeee
Confidence 35789999999999995555 999999999999888888777665 489999995 36799999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
++++ ..++..+.+|...|..++|+| +|++|++++.|.+-++||++++..+...++|...|.+++|.|+|. ++++|
T Consensus 247 ~~~~---e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tG 321 (459)
T KOG0272|consen 247 KLSQ---ETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATG 321 (459)
T ss_pred ccCC---CcchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc-eeecc
Confidence 9998 688899999999999999999 999999999999999999999999999999999999999999999 89999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
+.|..-+|||+++ +.++..+.+|..+|.+++|+|+|..|+||+.|++++|||++....+.....|..-|+.+.|+|+..
T Consensus 322 GlD~~~RvWDlRt-gr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 322 GLDSLGRVWDLRT-GRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred Cccchhheeeccc-CcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCC
Confidence 9999999999999 788899999999999999999999999999999999999999988888888999999999999666
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+++++++ .|++++||..++... +..+.+|++.|.++..++|++.+++++.|.++++|.
T Consensus 401 ~fL~Tas--yD~t~kiWs~~~~~~-~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTAS--YDNTVKIWSTRTWSP-LKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEcc--cCcceeeecCCCccc-chhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 6688888 799999999998865 999999999999999999999999999999999995
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=289.26 Aligned_cols=284 Identities=22% Similarity=0.319 Sum_probs=253.0
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|.++.|++|.++ ++++ ||.+.|||.-+......++++... |..++|+| .++++|+|+.|+...||
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~W-------VMtCA~sP-Sg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSW-------VMTCAYSP-SGNFVACGGLDNKCSIY 124 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCcee-------EEEEEECC-CCCeEEecCcCceeEEE
Confidence 58999999999999999 5555 999999999988777666665544 58999999 99999999999999999
Q ss_pred ECCCCC---CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEE
Q psy6213 80 NLGQIS---RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 80 ~~~~~~---~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 156 (330)
++.+.. ..+..+.+.+|.+.+.++.|. +...|++++.|.+..+||+++++.+..|.+|.+.|.++.++|...+.|
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~--dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFL--DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEc--CCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence 998532 225566789999999999998 467899999999999999999999999999999999999999444479
Q ss_pred EEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec--cccceEEEEE
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN--TIASVSRIKW 234 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~ 234 (330)
++|+-|+..++||++. +.+.++|.+|...|+++.|.|+|.-|++|+.|++.++||++..+++....+ ...+|++++|
T Consensus 203 vSg~cD~~aklWD~R~-~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~F 281 (343)
T KOG0286|consen 203 VSGGCDKSAKLWDVRS-GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAF 281 (343)
T ss_pred EecccccceeeeeccC-cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEE
Confidence 9999999999999998 688999999999999999999999999999999999999999866444333 3578999999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+..|++|+++.. |..+.+||.-+++. +..+.+|+..|.++..+|||.-+++||.|..++||.
T Consensus 282 S~SGRlLfagy~---d~~c~vWDtlk~e~-vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 282 SKSGRLLFAGYD---DFTCNVWDTLKGER-VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccccEEEeeec---CCceeEeeccccce-EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999998777764 99999999988876 888999999999999999999999999999999993
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=268.59 Aligned_cols=282 Identities=22% Similarity=0.357 Sum_probs=236.9
Q ss_pred CCcccceEEEEeeCCCe--eecC-CCeEEEEEcCCc-----ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC
Q psy6213 2 AYLSPVHKHGLKADNGL--AQPS-RNVFKIFLIKDT-----EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN 73 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~--~~~g-d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 73 (330)
.|++.|+.++..+.+.- +.+. |..+.+|++... ...+.+..|.+. |..+..++ ++++.++++.|
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~-------v~dv~~s~-dg~~alS~swD 84 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF-------VSDVVLSS-DGNFALSASWD 84 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceE-------ecceEEcc-CCceEEecccc
Confidence 59999999999998665 4444 999999998763 344555554443 58999999 99999999999
Q ss_pred CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC-CCCeEEEEEcCCC
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN-TESVRDVEFNPHS 152 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~ 152 (330)
+.+++||+.+ ++..+.+.+|...|.+++|+| +.+.+++|+.|.+|++|+............. .+.|.|+.|+|+.
T Consensus 85 ~~lrlWDl~~---g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 85 GTLRLWDLAT---GESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ceEEEEEecC---CcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 9999999998 788899999999999999998 8999999999999999999854433333332 7899999999984
Q ss_pred -CcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEE
Q psy6213 153 -PYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSR 231 (330)
Q Consensus 153 -~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 231 (330)
+.++++++.|++|++||+++ .+....+.+|.+.++.++++|||.++++|+.||.+.+||++.++. .+...+...|.+
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-lysl~a~~~v~s 238 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-LYSLEAFDIVNS 238 (315)
T ss_pred CCcEEEEccCCceEEEEccCC-cchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-eEeccCCCeEee
Confidence 34799999999999999998 777888999999999999999999999999999999999999855 666778899999
Q ss_pred EEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec----C-----CCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 232 IKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE----H-----KDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~-----~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
++|+|+... ++.+. +..|+|||+.+... +..+.. . .....+++|++||+.|+++-.|+.|++|+..
T Consensus 239 l~fspnryw-L~~at---~~sIkIwdl~~~~~-v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 239 LCFSPNRYW-LCAAT---ATSIKIWDLESKAV-VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEecCCcee-Eeecc---CCceEEEeccchhh-hhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999999876 44443 77799999998765 333321 1 2235678999999999999999999999754
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=288.84 Aligned_cols=281 Identities=18% Similarity=0.348 Sum_probs=249.1
Q ss_pred ccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 5 SPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
.+|..+.|.|+|+.|.+| .|.+.+|+...-.+....+.| +..|.++.|++ ++..+++|+.+|.|++|+..
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaH-------Ds~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAH-------DSPVRTMKWSH-NGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhh-------cccceeEEEcc-CCCEEEEcCCCceEEecccc
Confidence 479999999999995555 999999998654444443333 44579999999 99999999999999999987
Q ss_pred CCCCCceeEEeccc-ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec
Q psy6213 83 QISRSKQERVFNDH-KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
. ..++.+..| ...|.+++|+| .+..|++++.||+|+|||....+....+.+|.-.|.+++|+|... ++++++.
T Consensus 169 m----nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-Liasgsk 242 (464)
T KOG0284|consen 169 M----NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGSK 242 (464)
T ss_pred h----hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEccC
Confidence 5 344445544 49999999999 888999999999999999999999899999999999999999988 7999999
Q ss_pred CCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeE
Q psy6213 162 NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFH 241 (330)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 241 (330)
|..|++||.++ +.++.++..|+..|..+.|+|++++|++++.|..++++|+++.+.+.....|...++++.|+|-.+-|
T Consensus 243 DnlVKlWDprS-g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 243 DNLVKLWDPRS-GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred CceeEeecCCC-cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccc
Confidence 99999999999 78899999999999999999999999999999999999999888888888999999999999999889
Q ss_pred EEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 242 LASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 242 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+++++ .||.|..|.+...+.......+|...|++++|+|-|.+|++|+.|.++++|...
T Consensus 322 ftsgg--~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 322 FTSGG--SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeecc--CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 899999999985544345567899999999999999999999999999999643
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=286.10 Aligned_cols=240 Identities=23% Similarity=0.397 Sum_probs=225.3
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEec-CCCEEEEEecCCcEEEEEeecC
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV-ESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
.++..+.|++ +++.|++|+.+|.+++|+..+ ...+.++.+|...+.++.|+|. ++..+++|+.||++++|++.+.
T Consensus 176 rPis~~~fS~-ds~~laT~swsG~~kvW~~~~---~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 176 RPISGCSFSR-DSKHLATGSWSGLVKVWSVPQ---CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred CcceeeEeec-CCCeEEEeecCCceeEeecCC---cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 4468899998 999999999999999999988 7889999999999999999996 3778999999999999999999
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
.++..+.+|...|..++|+|+|+ +|++++.|.+-++||+++ +..+...++|...|.+++|+|||.++++|+.|..-+|
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~t-k~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLET-KSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred cchhhhhcchhhheeeeecCCCc-eeeecccccchhhccccc-chhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 99999999999999999999999 599999999999999999 6667778899999999999999999999999999999
Q ss_pred EeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec-CCCEEEE
Q psy6213 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG-DPQLFIA 289 (330)
Q Consensus 211 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s 289 (330)
||+++++++....+|..+|..++|+|+|.. +++++ .|++++|||++.... +.++.+|..-|+.+.|+| .|.+|+|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~-lATgs--~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYH-LATGS--SDNTCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceE-EeecC--CCCcEEEeeeccccc-ceecccccchhhheEecccCCeEEEE
Confidence 999999999999999999999999999986 77777 699999999998876 899999999999999999 8999999
Q ss_pred eecCCeEeeeec
Q psy6213 290 SSRVSIIPRAKN 301 (330)
Q Consensus 290 ~~~dg~i~iw~~ 301 (330)
++.|+++++|..
T Consensus 406 asyD~t~kiWs~ 417 (459)
T KOG0272|consen 406 ASYDNTVKIWST 417 (459)
T ss_pred cccCcceeeecC
Confidence 999999999974
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=280.90 Aligned_cols=289 Identities=22% Similarity=0.391 Sum_probs=249.3
Q ss_pred CCcccceEEEEeeCCC-eeecC--CCeEEEEEcCC--cceeeeeceee-----ccccccccceeeeeecccCCcEEEEEc
Q psy6213 2 AYLSPVHKHGLKADNG-LAQPS--RNVFKIFLIKD--TEFVETHNLRV-----GKNINLNFSCNDVAWSCIEENHIATGA 71 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~-~~~~g--d~~i~iw~~~~--~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~ 71 (330)
.|..+|.+++|+|-.. .+++| +-..++|++.. ........++. +....-...|++++|+. +|+.||+|+
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~-~G~~LatG~ 254 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN-DGTLLATGS 254 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC-CCCeEEEee
Confidence 4889999999999776 45655 99999999975 11111111111 12222234589999998 999999999
Q ss_pred CCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 72 TNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 72 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
.||.+++|+.. +....++..|+++|.+++|+. .+++|++++.|+++.+||..+++..+.+..|..+-..+.|-.+
T Consensus 255 ~~G~~riw~~~----G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~ 329 (524)
T KOG0273|consen 255 EDGEARIWNKD----GNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN 329 (524)
T ss_pred cCcEEEEEecC----chhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC
Confidence 99999999986 477888999999999999996 9999999999999999999999999999988888788999887
Q ss_pred CCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEE
Q psy6213 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSR 231 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 231 (330)
.. |++.+.|+.|+++.+.. ..++.++.+|.++|.++.|+|.|.+|++++.|++++||.............|...|..
T Consensus 330 ~~--F~ts~td~~i~V~kv~~-~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 330 DE--FATSSTDGCIHVCKVGE-DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred ce--EeecCCCceEEEEEecC-CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceee
Confidence 75 89999999999999987 7889999999999999999999999999999999999999888778888889999999
Q ss_pred EEEcCCCC--------eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 232 IKWRPQRK--------FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 232 ~~~~~~~~--------~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+.|+|.|+ ..+++++ .|++|++||+..+.+ +..+..|..+|.+++|+|+|+++|+|+.||.|.+|...
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas--~dstV~lwdv~~gv~-i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASAS--FDSTVKLWDVESGVP-IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred EeecCCCCccCCCcCCceEEEee--cCCeEEEEEccCCce-eEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence 99999753 3456666 699999999999966 89999999999999999999999999999999999743
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=275.25 Aligned_cols=245 Identities=25% Similarity=0.446 Sum_probs=216.0
Q ss_pred cccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEE
Q psy6213 46 KNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125 (330)
Q Consensus 46 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~ 125 (330)
....+...|.+++|+| ++..|++|+.|.++++||+.+ ..+..+.++|..-|.|++|+| |+..||+|+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~T---eTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDT---ETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCC---CCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEe
Confidence 3445666789999999 999999999999999999999 788899999999999999999 99999999999999999
Q ss_pred EeecCcee-eeeecCCCCeEEEEEcCC-----CCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEE
Q psy6213 126 DIRCQEST-KIFHSNTESVRDVEFNPH-----SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWL 199 (330)
Q Consensus 126 d~~~~~~~-~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 199 (330)
|.++++++ ..+.+|...|++++|.|- .+ .+++++.||.++|||+.. +.++..+.+|..+|+|+.|-.+ .++
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~-~~~~~~lsgHT~~VTCvrwGG~-gli 261 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKL-GTCVRTLSGHTASVTCVRWGGE-GLI 261 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccC-ceEEEEeccCccceEEEEEcCC-ceE
Confidence 99988775 668899999999999863 44 699999999999999987 7888999999999999999755 489
Q ss_pred EEEecCCcEEEEeCCCCc--------------------------------------------------------------
Q psy6213 200 ATASRDKTIKVWDLSIKP-------------------------------------------------------------- 217 (330)
Q Consensus 200 ~~~~~dg~i~i~d~~~~~-------------------------------------------------------------- 217 (330)
++|+.|++|++|+...+.
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 999999999999865531
Q ss_pred -----------------cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEE
Q psy6213 218 -----------------SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAW 280 (330)
Q Consensus 218 -----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 280 (330)
.+....+|..-|+.+.|+||+++ +++++ .|..|++||.++++. +..+++|-+.|+.++|
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~-IASaS--FDkSVkLW~g~tGk~-lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY-IASAS--FDKSVKLWDGRTGKF-LASFRGHVAAVYQVAW 417 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccE-EEEee--cccceeeeeCCCcch-hhhhhhccceeEEEEe
Confidence 01122234556889999999997 77777 799999999999987 8999999999999999
Q ss_pred ecCCCEEEEeecCCeEeeeecc
Q psy6213 281 RGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 281 ~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+.|.++|++|+.|.++++|+..
T Consensus 418 saDsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 418 SADSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred ccCccEEEEcCCCceEEEEEee
Confidence 9999999999999999999854
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=252.27 Aligned_cols=268 Identities=19% Similarity=0.332 Sum_probs=229.7
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccc
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHK 97 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 97 (330)
+++| |.+|++|...+|.+...++..... |+.+...| ++..||+|+.- .|++||+.+.+ ..++.++.+|.
T Consensus 14 vsA~YDhTIRfWqa~tG~C~rTiqh~dsq-------VNrLeiTp-dk~~LAaa~~q-hvRlyD~~S~n-p~Pv~t~e~h~ 83 (311)
T KOG0315|consen 14 VSAGYDHTIRFWQALTGICSRTIQHPDSQ-------VNRLEITP-DKKDLAAAGNQ-HVRLYDLNSNN-PNPVATFEGHT 83 (311)
T ss_pred EeccCcceeeeeehhcCeEEEEEecCccc-------eeeEEEcC-CcchhhhccCC-eeEEEEccCCC-CCceeEEeccC
Confidence 5666 999999999999998887665544 59999999 99999988764 79999999843 45889999999
Q ss_pred cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccce
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF 177 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 177 (330)
..|+.+.|.. +++.+++|++||+++|||++...+.+.++ +..+|+++..+|+... |+++..+|.|++||+.......
T Consensus 84 kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQte-Lis~dqsg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 84 KNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTE-LISGDQSGNIRVWDLGENSCTH 160 (311)
T ss_pred CceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcce-EEeecCCCcEEEEEccCCcccc
Confidence 9999999997 99999999999999999999977777777 6799999999999884 8999999999999999843333
Q ss_pred eeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc------ccceeccccceEEEEEcCCCCeEEEEeecccCC
Q psy6213 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS------LEYSINTIASVSRIKWRPQRKFHLASCSLVVDS 251 (330)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 251 (330)
..+......|.++...|||++++.+...|..++|++-+... +.....|...+..+.+||++++ +++++ .|.
T Consensus 161 ~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~-lat~s--sdk 237 (311)
T KOG0315|consen 161 ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY-LATCS--SDK 237 (311)
T ss_pred ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE-EEeec--CCc
Confidence 33444567899999999999999999999999999976533 3344557889999999999998 55555 599
Q ss_pred eEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 252 SVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 252 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+++||+.++.-+.-..+.+|...+++.+||.||++|++++.|+.+++|+..
T Consensus 238 tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 238 TVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred eEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 999999998744356788999999999999999999999999999999754
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=294.17 Aligned_cols=272 Identities=20% Similarity=0.372 Sum_probs=238.0
Q ss_pred ccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 5 SPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
..++|..|++|+..+|+| |..|++|.+...++..... .+ .-..+=+.+.|-.+.+.|..
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~---------------~~----~l~~~d~~sad~~~~~~D~~ 439 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD---------------AS----DLSNIDTESADVDVDMLDDD 439 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccc---------------hh----hhccccccccchhhhhcccc
Confidence 458999999999999999 9999999998754332111 01 11222234445446666665
Q ss_pred CCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecC
Q psy6213 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN 162 (330)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 162 (330)
. ......+.+|.++|....|+| +.++|++++.|+++++|.+.+..++..+++|..||..+.|+|.|- .|++++.|
T Consensus 440 ~---~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy-YFatas~D 514 (707)
T KOG0263|consen 440 S---SGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY-YFATASHD 514 (707)
T ss_pred C---CceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce-EEEecCCC
Confidence 5 566667899999999999999 999999999999999999999999999999999999999999987 59999999
Q ss_pred CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEE
Q psy6213 163 GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHL 242 (330)
Q Consensus 163 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 242 (330)
++-++|.... ..+.+.+.+|.+.+.|+.|+|+..|+++|+.|.++|+||..++..+..+.+|.++|.+++|+|+|++ +
T Consensus 515 ~tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~-L 592 (707)
T KOG0263|consen 515 QTARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY-L 592 (707)
T ss_pred ceeeeeeccc-CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce-E
Confidence 9999999988 7789999999999999999999999999999999999999999899999999999999999999998 6
Q ss_pred EEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecccee
Q psy6213 243 ASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKIF 305 (330)
Q Consensus 243 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 305 (330)
++++ .|+.|.+||+.++.. +..+.+|.+.|.++.|+.||..||+|+.|.+|++|+..+..
T Consensus 593 aSg~--ed~~I~iWDl~~~~~-v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 593 ASGD--EDGLIKIWDLANGSL-VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred eecc--cCCcEEEEEcCCCcc-hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 6666 799999999999876 88899999999999999999999999999999999865444
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=265.37 Aligned_cols=283 Identities=23% Similarity=0.375 Sum_probs=258.0
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|..+|+.+-|+|+-.. ++++ |++|++||..++++...+..|... +.+++|+. .|.++++++.|-.+++|
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~s-------v~di~~~a-~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDS-------VFDISFDA-SGKYLATCSSDLSAKLW 177 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccc-------eeEEEEec-CccEEEecCCccchhhe
Confidence 47889999999999998 6666 999999999999997777666544 58999998 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|.++. .++++.+.+|+..|.+++|-| .++++++++.|.+|+.|++.++.++.++.+|...|..++.+.||. +++++
T Consensus 178 d~~~~--~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-i~As~ 253 (406)
T KOG0295|consen 178 DFDTF--FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-IIASC 253 (406)
T ss_pred eHHHH--HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-EEEec
Confidence 99763 567778889999999999999 789999999999999999999999999999999999999999998 89999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC---------------CCEEEEEecCCcEEEEeCCCCccccceec
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE---------------HAWLATASRDKTIKVWDLSIKPSLEYSIN 224 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 224 (330)
+.|.++++|-+.+ .++...+..|.-+|-+++|.|. ++++.+++.|++|++||+.++.++....+
T Consensus 254 s~dqtl~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g 332 (406)
T KOG0295|consen 254 SNDQTLRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG 332 (406)
T ss_pred CCCceEEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec
Confidence 9999999999998 6677888999999999999873 25899999999999999999999999999
Q ss_pred cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 225 TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 225 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
|...|..++|+|.|+|++ ++. +|+++++||+++.++ ...+..|+.-++++.|+.+..++++|+-|..+++|+.
T Consensus 333 hdnwVr~~af~p~Gkyi~-Sca--DDktlrvwdl~~~~c-mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYIL-SCA--DDKTLRVWDLKNLQC-MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccceeeeeEEcCCCeEEE-EEe--cCCcEEEEEecccee-eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999855 555 699999999999877 7888899999999999999999999999999999974
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=251.71 Aligned_cols=283 Identities=28% Similarity=0.482 Sum_probs=243.9
Q ss_pred eEEEEee--CCCe-eecC-------CCeEEEEEcCCcc-eeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcE
Q psy6213 8 HKHGLKA--DNGL-AQPS-------RNVFKIFLIKDTE-FVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAV 76 (330)
Q Consensus 8 ~~~~~s~--~~~~-~~~g-------d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 76 (330)
.++.||| ++++ ++++ .|.+.|.++...+ +........ .....+++|++...+.+++++.||.+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~------~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDT------EDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeec------ccceeEeeecCCCcceEEEEecCceE
Confidence 5788998 4555 4433 7899999986433 222222222 22358999999788899999999999
Q ss_pred EEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEE
Q psy6213 77 VVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 156 (330)
++||+... ..++..++.|+.+|.++.|++.....+++++.|++|++|+..-++.+.++.+|...|...+|+|..+.++
T Consensus 86 rl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 86 RLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred EEeccCCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE
Confidence 99996543 5688899999999999999998888999999999999999999999999999999999999999998899
Q ss_pred EEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCCCCcc-ccceeccccceEEEEE
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLSIKPS-LEYSINTIASVSRIKW 234 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~ 234 (330)
++++.|+.+++||++.+++.+. ++.|...|.++.|+. +...++||+.|+.|+.||+++.+. +.....|.-.|..++|
T Consensus 164 as~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKF 242 (311)
T ss_pred EEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEec
Confidence 9999999999999998776655 888999999999998 667899999999999999998865 4445668889999999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec-CCCEEEEeecCCeEeeeec
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG-DPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~ 301 (330)
||....++++++ .|-+++|||...+...+.+...|+.-+.++.|++ ++.++|+++.|+.++||.+
T Consensus 243 Sph~~~lLaSas--YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASAS--YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhcc--ccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999998999999 8999999999977766788888999999999998 7889999999999999974
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=245.09 Aligned_cols=284 Identities=17% Similarity=0.265 Sum_probs=234.4
Q ss_pred CCcccceEEEEeeC-CCe-eecC-CCeEEEEEcCCc-ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEE
Q psy6213 2 AYLSPVHKHGLKAD-NGL-AQPS-RNVFKIFLIKDT-EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVV 77 (330)
Q Consensus 2 ~H~~~v~~~~~s~~-~~~-~~~g-d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 77 (330)
.|.+++..++|+|- |.. +++| |+.|+||+...+ .......+. ..+...|..++|+| .+++|++|+.|.++.
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld----~~hkrsVRsvAwsp-~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD----DGHKRSVRSVAWSP-HGRYLASASFDATVV 86 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc----ccchheeeeeeecC-CCcEEEEeeccceEE
Confidence 58899999999998 887 6666 999999999852 222221111 13344579999999 999999999999999
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC---ceeeeeecCCCCeEEEEEcCCCCc
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ---ESTKIFHSNTESVRDVEFNPHSPY 154 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~ 154 (330)
||.-.. ...+++..+.+|...|.+++|++ ++++||+++.|+.|-+|.+..+ ++...++.|...|..+.|+|...
T Consensus 87 Iw~k~~-~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d- 163 (312)
T KOG0645|consen 87 IWKKED-GEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED- 163 (312)
T ss_pred EeecCC-CceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-
Confidence 998764 44788899999999999999998 9999999999999999998744 45778889999999999999888
Q ss_pred EEEEEecCCcEEEEecCC--CccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEE
Q psy6213 155 AFASVSENGTIQQWDVRR--PEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRI 232 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 232 (330)
+|++++.|.+|++|+-.. .-.+..++.+|...|.+++|+|.|..|++++.|++++||-.... ....+..++..+
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v 239 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDV 239 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEee
Confidence 899999999999997663 23578899999999999999999999999999999999986633 233456788999
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCC-Ccc-----ceEeecCCCCeEEEEEec-CCCEEEEeecCCeEeeeecc
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRP-YIP-----LASFTEHKDVVSGLAWRG-DPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~-~~~-----~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~ 302 (330)
.|. ++ ++++++ .|+.|++|.-... ..| ......|...|++++|.| -.++|++++.||.+++|+..
T Consensus 240 ~W~-~~--~IaS~g--gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 240 PWD-NG--VIASGG--GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eec-cc--ceEecc--CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 998 44 577766 6999999987642 111 234457889999999999 47899999999999999753
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=268.64 Aligned_cols=281 Identities=27% Similarity=0.442 Sum_probs=242.0
Q ss_pred CCcccceEEEEeeCCCee-ecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLA-QPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~-~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|+++++ +++ +|.+++|++.+++.......+. ..+..+.|+| +++.+++++.+|.|++|
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~-------~~i~~~~~~~-~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-------GPVRDVAASA-DGTYLASGSSDKTIRLW 78 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCC-------cceeEEEECC-CCCEEEEEcCCCeEEEE
Confidence 599999999999999994 445 9999999999877554444332 2347899999 88899999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
++.. .+....+..|...+.++.|+| ++.++++++.++.+++||+++++....+..|...+.+++|+|++. +++++
T Consensus 79 ~~~~---~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 153 (289)
T cd00200 79 DLET---GECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-FVASS 153 (289)
T ss_pred EcCc---ccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC-EEEEE
Confidence 9987 566777778888999999998 678888888899999999998888888888889999999999976 57777
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
+.++.|++||+++ .+....+..|...+.++.|+|+++.+++++.|+.+++||++..+.......+...+.++.|+|++.
T Consensus 154 ~~~~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 232 (289)
T cd00200 154 SQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY 232 (289)
T ss_pred cCCCcEEEEEccc-cccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCc
Confidence 7799999999987 566777788888999999999999999999999999999998755555556778999999999976
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+ +++++ .++.+++||+.++.. ...+..|...|.+++|+|++++|++++.||.+++|+
T Consensus 233 ~-~~~~~--~~~~i~i~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 233 L-LASGS--EDGTIRVWDLRTGEC-VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred E-EEEEc--CCCcEEEEEcCCcee-EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 5 55555 599999999987755 677778999999999999999999999999999995
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=259.54 Aligned_cols=283 Identities=22% Similarity=0.285 Sum_probs=251.6
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|.|+++.|.+.++++| |++++|||+.++++...+..+... |..+++|+ ...++++++.|+.|+.|
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~-------vr~vavS~-rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET-------VRGVAVSK-RHPYLFSAGEDKQVKCW 220 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhhe-------eeeeeecc-cCceEEEecCCCeeEEE
Confidence 489999999999999996666 999999999999998887766544 58899998 89999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|++. .+.++.+.+|-+.|.+++.+| .-+.|++|+.|.++++||+++...+..+.+|..+|.++.+.|.++ .+++|
T Consensus 221 DLe~---nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-qvit~ 295 (460)
T KOG0285|consen 221 DLEY---NKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP-QVITG 295 (460)
T ss_pred echh---hhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC-ceEEe
Confidence 9998 788999999999999999999 889999999999999999999999999999999999999999888 49999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
+.|++|++||++. ++....+..|+..+.+++.+|....+++++.| .|+-|++..+..+.....+..-+.+++...|+-
T Consensus 296 S~D~tvrlWDl~a-gkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v 373 (460)
T KOG0285|consen 296 SHDSTVRLWDLRA-GKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV 373 (460)
T ss_pred cCCceEEEeeecc-CceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCce
Confidence 9999999999998 66677888899999999999999999999987 599999999977777888899999999999984
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEee--------cCCCCeEEEEEecCCCEEEEeecCCeEeeeeccce
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFT--------EHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 304 (330)
+++++ ++|.+.+||.+++.. .+... ..+..|.+.+|...|..|++|..|.+|++|+..+.
T Consensus 374 --~~~G~--dng~~~fwdwksg~n-yQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 374 --LVSGG--DNGSIMFWDWKSGHN-YQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred --EEEcC--CceEEEEEecCcCcc-cccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 55555 699999999998764 32221 12357899999999999999999999999986544
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=251.56 Aligned_cols=280 Identities=21% Similarity=0.307 Sum_probs=239.4
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCc-ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDT-EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
.|.+.|+.+.|+|+|.+ +++| |..|.+|+.... +-.-..+.|. ..|..+.|.+ +++.+++++.|.+++.
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHs-------gAVM~l~~~~-d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHS-------GAVMELHGMR-DGSHILSCGTDKTVRG 116 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecccc-------ceeEeeeecc-CCCEEEEecCCceEEE
Confidence 58999999999999999 5555 999999996542 2222333443 3469999999 9999999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
||.++ ++....++.|..-++.+.-+..+..++.+++.|+++++||+++.+.++++. .+-+++++.|..++.. +.+
T Consensus 117 wD~~t---G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~q-v~s 191 (338)
T KOG0265|consen 117 WDAET---GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQ-VIS 191 (338)
T ss_pred Eeccc---ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccc-eee
Confidence 99999 889999999999999999665566778899999999999999999988886 4567999999999984 899
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc----ccceecc----ccceE
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS----LEYSINT----IASVS 230 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~----~~~v~ 230 (330)
|+-|+.|++||+++ ......+.+|.++|+.+..+|+|.++.+-+.|.++++||++.... +.....+ .....
T Consensus 192 ggIdn~ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 192 GGIDNDIKVWDLRK-NDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred ccccCceeeecccc-CcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 99999999999998 678899999999999999999999999999999999999986522 2222222 34566
Q ss_pred EEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 231 RIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
.++|+|++.+ +.+++ .|..+++||...... +..+.+|.+.|++++|+|...+|.+++.|.+|++=
T Consensus 271 ~cswsp~~~~-i~ags--~dr~vyvwd~~~r~~-lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 271 KCSWSPNGTK-ITAGS--ADRFVYVWDTTSRRI-LYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred eeeccCCCCc-ccccc--ccceEEEeecccccE-EEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 7899999998 55555 599999999988766 88999999999999999999999999999999874
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=262.52 Aligned_cols=276 Identities=20% Similarity=0.396 Sum_probs=247.4
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
+..|++++|+.+|.+|++| ||.++||+.. |.+...+..|.++ |.++.|+. .+++|++++.|+++.+||.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgP-------I~slKWnk-~G~yilS~~vD~ttilwd~ 305 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGP-------IFSLKWNK-KGTYILSGGVDGTTILWDA 305 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCc-------eEEEEEcC-CCCEEEeccCCccEEEEec
Confidence 3579999999999998888 9999999976 4555555555544 69999998 9999999999999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
.+ +...+.+..|..+...+.|- +...+++++.|+.|+++.+....++.++.+|.++|.++.|+|.+. +|++++.
T Consensus 306 ~~---g~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~Sd 379 (524)
T KOG0273|consen 306 HT---GTVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSD 379 (524)
T ss_pred cC---ceEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecC
Confidence 88 77888888898888889997 678899999999999999999999999999999999999999999 8999999
Q ss_pred CCcEEEEecCCCccceeeeccCCCCeEEEEEcCCC---------CEEEEEecCCcEEEEeCCCCccccceeccccceEEE
Q psy6213 162 NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH---------AWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRI 232 (330)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 232 (330)
|++++||.+.. ......+..|...|..+.|+|.| ..+++++.|++|++||+..+.++..+..|..+|.++
T Consensus 380 D~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysv 458 (524)
T KOG0273|consen 380 DGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSV 458 (524)
T ss_pred CCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEE
Confidence 99999999887 67788899999999999999954 579999999999999999998888888999999999
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+|+|+|++ +++++ .||.|.+|+.+.++. ++...+ .+.|..++|+.+|..|..+-.||.+++-+
T Consensus 459 afS~~g~y-lAsGs--~dg~V~iws~~~~~l-~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 459 AFSPNGRY-LASGS--LDGCVHIWSTKTGKL-VKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EecCCCcE-EEecC--CCCeeEeccccchhe-eEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 99999998 77777 799999999999976 666655 56699999999999999999999998754
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=296.48 Aligned_cols=290 Identities=20% Similarity=0.327 Sum_probs=232.3
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeee-eceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVET-HNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
.|.+.|++++|+|+|++ +++| |+.|+||+......... ..... ........+.+++|+|..+.+|++++.||.|++
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~l 559 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPV-VELASRSKLSGICWNSYIKSQVASSNFEGVVQV 559 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccce-EEecccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence 48899999999999999 5556 99999999864210000 00000 001112346899999856889999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
||+.+ .+.+..+.+|...|.+++|+|.++.+|++|+.|+.|++||+++++.+..+..+ ..+.++.|++.....+++
T Consensus 560 Wd~~~---~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 560 WDVAR---SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EECCC---CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 99987 67788889999999999999767899999999999999999999888888744 679999996543347999
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC------ccccceeccccceEEE
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK------PSLEYSINTIASVSRI 232 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~ 232 (330)
|+.||.|++||+++...+...+.+|...|.++.|. ++.+|++++.|+.|++||++.. ..+.....|...+..+
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 99999999999987555667788999999999997 6789999999999999999753 2344455677889999
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCccce-------------EeecCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA-------------SFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
+|+|++.+ +++++ .|+.|++|+...... .. ....|...|.+++|+|++..|++|+.||.|++|
T Consensus 715 ~~s~~~~~-lasgs--~D~~v~iw~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 715 GLSVSDGY-IATGS--ETNEVFVYHKAFPMP-VLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred EEcCCCCE-EEEEe--CCCEEEEEECCCCCc-eEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 99999996 66666 699999999865432 11 112345679999999999999999999999999
Q ss_pred ec
Q psy6213 300 KN 301 (330)
Q Consensus 300 ~~ 301 (330)
+.
T Consensus 791 ~~ 792 (793)
T PLN00181 791 EM 792 (793)
T ss_pred ec
Confidence 74
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=280.69 Aligned_cols=284 Identities=24% Similarity=0.409 Sum_probs=242.7
Q ss_pred CcccceEEEEeeCCCeeecC--CCeEEEEEcCCcc--eeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTE--FVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
|...|.++.|+++|++++++ ++.+++|+....+ ....+ ..+...|.+++|+| ++.++++++.|+++++
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-------~~h~~~v~~~~fs~-d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-------SGHTRGVSDVAFSP-DGSYLLSGSDDKTLRI 229 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-------cccccceeeeEECC-CCcEEEEecCCceEEE
Confidence 46789999999999995555 9999999997665 22222 33445579999999 9999999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
||+.. .....+++.+|...|++++|+| .++++++|+.|++|++||++++++...+.+|...|++++|++++. .+++
T Consensus 230 wd~~~--~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~-~l~s 305 (456)
T KOG0266|consen 230 WDLKD--DGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGN-LLVS 305 (456)
T ss_pred eeccC--CCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCC-EEEE
Confidence 99943 2688899999999999999999 669999999999999999999999999999999999999999999 5888
Q ss_pred EecCCcEEEEecCCCcc-ceeeeccCCCC--eEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecccc---ceEEE
Q psy6213 159 VSENGTIQQWDVRRPEK-CFYQFTAHSGP--IFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIA---SVSRI 232 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~~ 232 (330)
++.|+.|++||+.++.. +...+..+... ++++.|+|++.++++++.|+.+++||+...........+.. .+.+.
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence 89999999999998442 34566655554 99999999999999999999999999998877666666654 44455
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC-CCCeEEEEEecCCCEEEEee--cCCeEeeeecc
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH-KDVVSGLAWRGDPQLFIASS--RVSIIPRAKNI 302 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~--~dg~i~iw~~~ 302 (330)
..++.+++ +.+++ .|+.|++||+.++.. +..+.+| ...+..+.++|..+++++++ .|+.+++|+..
T Consensus 386 ~~~~~~~~-i~sg~--~d~~v~~~~~~s~~~-~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 386 TLSTGGKL-IYSGS--EDGSVYVWDSSSGGI-LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cccCCCCe-EEEEe--CCceEEEEeCCccch-hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 66788887 55555 699999999998765 8889999 88999999999999999998 78999999753
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=259.22 Aligned_cols=289 Identities=18% Similarity=0.291 Sum_probs=227.1
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecc------------------
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSC------------------ 61 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------ 61 (330)
.|..+++-..|+|.|-|+++| .|+|||||....+.....++ ..+..+|.+++|++
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef-----~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEF-----QVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeee-----eecccccccceeCCCCcEEEEEecCccceeEE
Confidence 588999999999999998888 99999999876443322211 12223345555555
Q ss_pred --------------------------cCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEE
Q psy6213 62 --------------------------IEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLIS 115 (330)
Q Consensus 62 --------------------------~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~ 115 (330)
...-++++|+.|+.|.+|+-.. .+....+..|..-|+++.|+| ++.++++
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP---FKFk~s~r~HskFV~~VRysP-DG~~Fat 207 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP---FKFKSSFREHSKFVNCVRYSP-DGSRFAT 207 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC---eeeeecccccccceeeEEECC-CCCeEEE
Confidence 2333444444444444444332 455556678999999999999 8999999
Q ss_pred EecCCcEEEEEeecCceeeeee---cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCc------------------
Q psy6213 116 GSQDGTMRLFDIRCQESTKIFH---SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE------------------ 174 (330)
Q Consensus 116 ~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~------------------ 174 (330)
++.||++.+||=.+++.+..+. +|.+.|.+++|+||+. .+++++.|.++++||+.+..
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~ 286 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC 286 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence 9999999999999999999998 7999999999999999 59999999999999987532
Q ss_pred ------------------------cceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCc-------------
Q psy6213 175 ------------------------KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKP------------- 217 (330)
Q Consensus 175 ------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------- 217 (330)
.+.+.+.+|...|+++..+|++++|++|+.||.|.-||...+.
T Consensus 287 lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 287 LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 2334567899999999999999999999999999999875442
Q ss_pred --------------------------------------------------------------------------------
Q psy6213 218 -------------------------------------------------------------------------------- 217 (330)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (330)
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~ 446 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES 446 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence
Q ss_pred --------------------------------cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccc
Q psy6213 218 --------------------------------SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPL 265 (330)
Q Consensus 218 --------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~ 265 (330)
.......|.++++.++|+||+.| ++++. ..+.+.+||+.+.+...
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y-la~~D--a~rkvv~yd~~s~~~~~ 523 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY-LAAGD--ASRKVVLYDVASREVKT 523 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE-EEEec--cCCcEEEEEcccCceec
Confidence 01112234567888999999998 56665 68999999999887655
Q ss_pred eEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 266 ASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
..+.-|...|.+++|+|+..++|+|+.|-.|.||+..+
T Consensus 524 ~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 524 NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 66677999999999999999999999999999997543
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=250.71 Aligned_cols=280 Identities=20% Similarity=0.320 Sum_probs=238.5
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|+++|++++.+|+.+++++| |..-.+|++.+++....+..|.. +|+++.|+. ++.+||+|..+|.|+||
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKD-------SVt~~~Fsh-dgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKD-------SVTCCSFSH-DGTLLATGDMSGKVLVF 133 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCC-------ceEEEEEcc-CceEEEecCCCccEEEE
Confidence 499999999999988885555 99999999999997766655544 469999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
+..+ +.....+...-..+.-+.|+| .+..|+.|+.||.+-+|.+.++...+.+.+|..++++=.|.|+|+ .++++
T Consensus 134 ~~st---g~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK-r~~tg 208 (399)
T KOG0296|consen 134 KVST---GGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK-RILTG 208 (399)
T ss_pred Eccc---CceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc-eEEEE
Confidence 9988 555556655667889999999 999999999999999999999888999999999999999999999 59999
Q ss_pred ecCCcEEEEecCCCccceeeec---------------------------------------------------cCCCCeE
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFT---------------------------------------------------AHSGPIF 188 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~---------------------------------------------------~~~~~i~ 188 (330)
..||+|++||+.+. +++..+. .+...+.
T Consensus 209 y~dgti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred ecCceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 99999999999874 3333222 1111222
Q ss_pred EEEEcC---CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccc
Q psy6213 189 ACDWHP---EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPL 265 (330)
Q Consensus 189 ~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~ 265 (330)
++.+.| .=.+.|+|+.||+|.|||+... .++....|..+|..+.|-+ ..+|++++. +|.|+.||.+++.. +
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~~R~~c~he~~V~~l~w~~-t~~l~t~c~---~g~v~~wDaRtG~l-~ 361 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAAS-TLRHICEHEDGVTKLKWLN-TDYLLTACA---NGKVRQWDARTGQL-K 361 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccc-hhheeccCCCceEEEEEcC-cchheeecc---CceEEeeeccccce-E
Confidence 333333 3457899999999999999887 6777778889999999999 677788876 99999999999987 8
Q ss_pred eEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 266 ASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
..+.+|...|.+++.+|+.++++++|.|++.+||+.
T Consensus 362 ~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 362 FTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred EEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 999999999999999999999999999999999975
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=266.20 Aligned_cols=280 Identities=20% Similarity=0.341 Sum_probs=240.4
Q ss_pred ccceEEEEeeCCCeeecC---CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 5 SPVHKHGLKADNGLAQPS---RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
.+|..++|+..|.+++.| -|.+.||++.+...+-..+.|.. .+++++++| +++++|+|+.||.|+|||.
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~-------~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~ 379 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD-------RITSLAYSP-DGQLIATGAEDGKVKVWNT 379 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc-------ceeeEEECC-CCcEEEeccCCCcEEEEec
Confidence 568899999999996666 57999999998776655554443 369999999 9999999999999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCC-CCeEEEEEcCCCCcEEEEEe
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNT-ESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~ 160 (330)
.. +-+..++..|+..|+.+.|+. .++.+++++.||+|+.||+...+..+++.... ....|++..|.|. ++.+|+
T Consensus 380 ~S---gfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~ 454 (893)
T KOG0291|consen 380 QS---GFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGA 454 (893)
T ss_pred cC---ceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeec
Confidence 88 899999999999999999996 99999999999999999999999888887533 4567899999998 677777
Q ss_pred cCC-cEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 161 ENG-TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 161 ~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
.|. .|.+|++++ ++.+..+.+|.++|.+++|+|++..|++++.|.+|++||+-..............+..++|.|+|+
T Consensus 455 ~d~F~IfvWS~qT-GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 455 QDSFEIFVWSVQT-GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGK 533 (893)
T ss_pred cceEEEEEEEeec-CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCC
Confidence 665 599999999 788999999999999999999999999999999999999987766777777888999999999999
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEe--------------------ecCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASF--------------------TEHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~--------------------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
.+.++. .||.|.+||.....+ ...+ .......+.+++++||..|++||....|++|
T Consensus 534 elaVaT---ldgqItf~d~~~~~q-~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 534 ELAVAT---LDGQITFFDIKEAVQ-VGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred eEEEEE---ecceEEEEEhhhcee-eccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 855555 599999999876533 1111 1123578999999999999999999999999
Q ss_pred ecc
Q psy6213 300 KNI 302 (330)
Q Consensus 300 ~~~ 302 (330)
+..
T Consensus 610 ~v~ 612 (893)
T KOG0291|consen 610 DVP 612 (893)
T ss_pred ECc
Confidence 843
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=255.31 Aligned_cols=289 Identities=18% Similarity=0.281 Sum_probs=238.1
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|..-|+|+.|+|||.+ +++| ||++.+||=.+++.+..+.- ...+..+|.+++|+| ++..+++++.|.+++||
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~----~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED----SDAHKGSIFALSWSP-DSTQFLTVSADKTIKIW 262 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC----CCCccccEEEEEECC-CCceEEEecCCceEEEE
Confidence 58889999999999999 8888 99999999999998877653 334456689999999 99999999999999999
Q ss_pred ECCCCCC----------------------------------------CceeEEecccccceeEEEEEecCCCEEEEEecC
Q psy6213 80 NLGQISR----------------------------------------SKQERVFNDHKRTVNKVSFHYVESNWLISGSQD 119 (330)
Q Consensus 80 ~~~~~~~----------------------------------------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 119 (330)
|+.+... ......+.+|...|+++..+| ++.+|++|+.|
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyD 341 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYD 341 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccC
Confidence 9865211 223445678999999999998 88999999999
Q ss_pred CcEEEEEeecCcee-------------------------------ee---------------------------------
Q psy6213 120 GTMRLFDIRCQEST-------------------------------KI--------------------------------- 135 (330)
Q Consensus 120 ~~i~i~d~~~~~~~-------------------------------~~--------------------------------- 135 (330)
|.|.-||..++..- +.
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 99999987543110 00
Q ss_pred ---------eecC--------CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCc-cceeeeccCCCCeEEEEEcCCCC
Q psy6213 136 ---------FHSN--------TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE-KCFYQFTAHSGPIFACDWHPEHA 197 (330)
Q Consensus 136 ---------~~~~--------~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~ 197 (330)
++.+ .-...+++++|++. .++.|++||.|++|.+.... ........|.++|++++|+||+.
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~ 500 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS-EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGA 500 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCC-EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCc
Confidence 0000 11245678889988 59999999999999998643 33446677999999999999999
Q ss_pred EEEEEecCCcEEEEeCCCCccc-cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeE
Q psy6213 198 WLATASRDKTIKVWDLSIKPSL-EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVS 276 (330)
Q Consensus 198 ~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~ 276 (330)
+|+++...+.+.+||..+.+.. ....-|...|.+++|+|+... +|+++ .|..|.||++.++...+....+|...|+
T Consensus 501 yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~-vATGS--lDt~Viiysv~kP~~~i~iknAH~~gVn 577 (603)
T KOG0318|consen 501 YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKL-VATGS--LDTNVIIYSVKKPAKHIIIKNAHLGGVN 577 (603)
T ss_pred EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceE-EEecc--ccceEEEEEccChhhheEeccccccCce
Confidence 9999999999999999988553 334448899999999999994 88888 8999999999999877777789999999
Q ss_pred EEEEecCCCEEEEeecCCeEeeeec
Q psy6213 277 GLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 277 ~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.+.|- |...+++.+.|..|++|..
T Consensus 578 ~v~wl-de~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 578 SVAWL-DESTVVSSGQDANIKVWNV 601 (603)
T ss_pred eEEEe-cCceEEeccCcceeEEecc
Confidence 99996 5678999999999999964
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=236.50 Aligned_cols=240 Identities=25% Similarity=0.365 Sum_probs=210.7
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCC--CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQI--SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
.|+.++..+.+.+.+++++.|..+.+|++... +.+...+.+.+|...|..+..++ +++++++++.|+++++||+.++
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g 95 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATG 95 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCC
Confidence 36888888867899999999999999998763 23567889999999999999998 9999999999999999999999
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc--CCCCeEEEEEcCC--CCEEEEEecCC
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA--HSGPIFACDWHPE--HAWLATASRDK 206 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~--~~~l~~~~~dg 206 (330)
+..+.|.+|...|.+++|++++. .+++|+.|.+|++|+... .+..++.. +.+.|+++.|+|+ ..+|++++.|+
T Consensus 96 ~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk 172 (315)
T KOG0279|consen 96 ESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK 172 (315)
T ss_pred cEEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc
Confidence 99999999999999999999998 599999999999999985 33333333 3789999999997 78999999999
Q ss_pred cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCE
Q psy6213 207 TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQL 286 (330)
Q Consensus 207 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 286 (330)
++++||+++.+......+|...++.+++||||.. .++++ .||.+.+||++.++. ++.+ +|...|.+++|+|+...
T Consensus 173 tvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGsl-casGg--kdg~~~LwdL~~~k~-lysl-~a~~~v~sl~fspnryw 247 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSL-CASGG--KDGEAMLWDLNEGKN-LYSL-EAFDIVNSLCFSPNRYW 247 (315)
T ss_pred eEEEEccCCcchhhccccccccEEEEEECCCCCE-EecCC--CCceEEEEEccCCce-eEec-cCCCeEeeEEecCCcee
Confidence 9999999999888888899999999999999994 77777 799999999999876 5555 56789999999998877
Q ss_pred EEEeecCCeEeeeecc
Q psy6213 287 FIASSRVSIIPRAKNI 302 (330)
Q Consensus 287 l~s~~~dg~i~iw~~~ 302 (330)
|+.+. +..|+||+..
T Consensus 248 L~~at-~~sIkIwdl~ 262 (315)
T KOG0279|consen 248 LCAAT-ATSIKIWDLE 262 (315)
T ss_pred Eeecc-CCceEEEecc
Confidence 77665 4459999865
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=275.66 Aligned_cols=295 Identities=43% Similarity=0.811 Sum_probs=264.0
Q ss_pred cccceEEEEeeCCCe-eecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 4 LSPVHKHGLKADNGL-AQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
.....+++..++-.. +.+|...++||.+.............+......+++.++.|.....++||+++..|.|.+||+.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 456778888888888 5555889999999887666655555555666677889999998789999999999999999998
Q ss_pred CCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecC
Q psy6213 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN 162 (330)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 162 (330)
...+.+.+..+..|+..++++.|++...++|++|+.||.|++||++..+...++.+....|+.++|+|...+.|+++.+.
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 86667777889999999999999998999999999999999999999999999998899999999999988899999999
Q ss_pred CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc-ccceeccccceEEEEEcCCCCeE
Q psy6213 163 GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS-LEYSINTIASVSRIKWRPQRKFH 241 (330)
Q Consensus 163 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l 241 (330)
|.+++||++.+.++...+.+|.++|.++.|+|++.+||+|+.|+.|+|||..+.+. ....+....++.++.|-|..++.
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYH 278 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccch
Confidence 99999999999999999999999999999999999999999999999999986543 55566678999999999999999
Q ss_pred EEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec-CCCEEEEeecCCeEee
Q psy6213 242 LASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG-DPQLFIASSRVSIIPR 298 (330)
Q Consensus 242 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~i 298 (330)
+++++...|-.|+|||++.+-.|..++..|...++.++|.. |...|.+++.||.+..
T Consensus 279 LAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 279 LATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred hhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 99998777999999999999999999999999999999976 6778999999998765
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=232.96 Aligned_cols=260 Identities=21% Similarity=0.382 Sum_probs=218.5
Q ss_pred cccceEEEEeeCCCeeecC-CCeEEEEEcCCcceee--eeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 4 LSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVE--THNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.+.|+.+++.||++.|+++ ...|++||+.+++... .+..+.. .|+++.|.. +++.+++|++||+++|||
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-------NVtaVgF~~-dgrWMyTgseDgt~kIWd 111 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-------NVTAVGFQC-DGRWMYTGSEDGTVKIWD 111 (311)
T ss_pred ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC-------ceEEEEEee-cCeEEEecCCCceEEEEe
Confidence 3679999999999997777 9999999999876533 3333322 369999998 999999999999999999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec-CCCCeEEEEEcCCCCcEEEEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS-NTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~ 159 (330)
++. ..+.+.+ .|..+|+++..+| +...|++|..+|.|++||+.+..+...+-. ...+|.++...|+|. +++.+
T Consensus 112 lR~---~~~qR~~-~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~ 185 (311)
T KOG0315|consen 112 LRS---LSCQRNY-QHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAA 185 (311)
T ss_pred ccC---cccchhc-cCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-EEEEe
Confidence 987 4444444 4779999999999 888899999999999999988766655543 446899999999999 68888
Q ss_pred ecCCcEEEEecCCC-----ccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC-ccccceeccccceEEEE
Q psy6213 160 SENGTIQQWDVRRP-----EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK-PSLEYSINTIASVSRIK 233 (330)
Q Consensus 160 ~~dg~i~i~d~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~ 233 (330)
...|+.++|++-+. -.++..++.|.+.+..+.+||++++|++++.|.+++||+.++. +.......+...+..++
T Consensus 186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence 99999999998652 2456778899999999999999999999999999999999988 44455566788999999
Q ss_pred EcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEe
Q psy6213 234 WRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWR 281 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 281 (330)
||.||+||+.+++ |+..++|+++.++. +....+|.....+++..
T Consensus 266 FS~dg~YlvTass---d~~~rlW~~~~~k~-v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 266 FSADGEYLVTASS---DHTARLWDLSAGKE-VRQYQGHHKAAVCVALN 309 (311)
T ss_pred eccCccEEEecCC---CCceeecccccCce-eeecCCcccccEEEEee
Confidence 9999999666665 99999999999987 78888988877777653
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=260.95 Aligned_cols=282 Identities=16% Similarity=0.275 Sum_probs=240.1
Q ss_pred CCcccceEEEEee-CCCe-eecC-CCeEEEEEcCC-cceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEE
Q psy6213 2 AYLSPVHKHGLKA-DNGL-AQPS-RNVFKIFLIKD-TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVV 77 (330)
Q Consensus 2 ~H~~~v~~~~~s~-~~~~-~~~g-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 77 (330)
.|+..|+++.|.| .+.+ |++| |+.|+||++.. +++++.+..|... |.+++|++ ++..+++++.|+.++
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~-------Vrd~~~s~-~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKP-------VRDASFNN-CGTSFLSASFDRFLK 283 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhh-------hhhhhccc-cCCeeeeeecceeee
Confidence 5999999999999 7777 7777 99999999987 7888888777654 58899998 999999999999999
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
+||+++ +++...+. ....+.|+.|+|++.+.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+++.+ ++
T Consensus 284 lwDtET---G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~r-Fi 358 (503)
T KOG0282|consen 284 LWDTET---GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRR-FI 358 (503)
T ss_pred eecccc---ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCce-Ee
Confidence 999999 78877775 34678999999966799999999999999999999999999999999999999999995 99
Q ss_pred EEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc---ccceecc--ccceEEE
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS---LEYSINT--IASVSRI 232 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~--~~~v~~~ 232 (330)
++++|+.+++|+.+.+-........+.-...++..+|++++++.-+.|+.|.+|.+...-. .....+| .+.-..+
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence 9999999999999874333333333444567899999999999999999999998754422 2222233 4567789
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec-CCCEEEEeecCCeEeeee
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG-DPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~ 300 (330)
.|||||.+ +++++ .+|.+.+||.++-+. +..+.+|.+++..+.|+| ....+|+|+.||.|++|+
T Consensus 439 ~fSpDG~~-l~SGd--sdG~v~~wdwkt~kl-~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 439 DFSPDGRT-LCSGD--SDGKVNFWDWKTTKL-VSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEcCCCCe-EEeec--CCccEEEeechhhhh-hhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999998 55555 599999999999877 889999999999999999 567899999999999995
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=236.91 Aligned_cols=256 Identities=16% Similarity=0.265 Sum_probs=224.4
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC--
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-- 130 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-- 130 (330)
.|.++.|++ +.++|++++.||.+.|||.-+ ......++-....|..++|+| .++++|+|+.|+...||++.+.
T Consensus 57 Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~T---tnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 57 KIYAMDWST-DSRRIVSASQDGKLIVWDSFT---TNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred ceeeeEecC-CcCeEEeeccCCeEEEEEccc---ccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecccccc
Confidence 369999999 999999999999999999988 566666777788999999999 9999999999999999999865
Q ss_pred ----ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEecC
Q psy6213 131 ----ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRD 205 (330)
Q Consensus 131 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 205 (330)
...+.+.+|.+.+.|+.|-+++. +++++.|.+..+||+++ ++.+..|.+|.+.|.+++++| +++.+++|+.|
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred cccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccc
Confidence 34567889999999999999764 89999999999999999 777899999999999999999 99999999999
Q ss_pred CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec--CCCCeEEEEEecC
Q psy6213 206 KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE--HKDVVSGLAWRGD 283 (330)
Q Consensus 206 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~ 283 (330)
+..++||++.+.....+..|+..|++++|.|+|.- +++++ +|++.++||++...+ +..+.. -..+|++++|+..
T Consensus 209 ~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~a-fatGS--DD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 209 KSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDA-FATGS--DDATCRLYDLRADQE-LAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred cceeeeeccCcceeEeecccccccceEEEccCCCe-eeecC--CCceeEEEeecCCcE-EeeeccCcccCCceeEEEccc
Confidence 99999999999889999999999999999999996 77887 799999999998876 555542 2358999999999
Q ss_pred CCEEEEeecCCeEeeeecccee------eeccccccccChhhh
Q psy6213 284 PQLFIASSRVSIIPRAKNIKIF------IASSRVSIIPRAENI 320 (330)
Q Consensus 284 ~~~l~s~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~~~ 320 (330)
|++|++|..|..+.+|+..+.- -+.++++.+...++.
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG 327 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDG 327 (343)
T ss_pred ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCC
Confidence 9999999999999999876432 345566655554443
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=261.81 Aligned_cols=280 Identities=18% Similarity=0.305 Sum_probs=251.3
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|+.+|.++.|+|...++.++ +|.|.|||.++..+.+.+.....+ |.+..|-+ ..+.+++|+.|..|++|
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~P-------vRa~kfia-RknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVP-------VRAAKFIA-RKNWIVTGSDDMQIRVF 82 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccc-------hhhheeee-ccceEEEecCCceEEEE
Confidence 478899999999999995555 999999999998888877665443 57788888 89999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC-ceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-ESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
+..+ ...+..+..|...|.+++.+| ...++++++.|-.|++||.+.. .+.+++++|...|.+++|+|.+++.|++
T Consensus 83 nynt---~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 83 NYNT---GEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred eccc---ceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee
Confidence 9999 889999999999999999999 8889999999999999998754 5678899999999999999999889999
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC--CCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcC
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE--HAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRP 236 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 236 (330)
++-|++|++|.+.+ ..+..++++|...|+++++-+- ..+|++|+.|..++|||.++..++....+|...|..+.|+|
T Consensus 159 ~sLDrTVKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred eeccccEEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 99999999999998 6678899999999999999884 46999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEee
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPR 298 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 298 (330)
.-+ ++++|+ +||+++||+-.+-++ ..++.-.-+.+++++-.+.++.++.|...|.+.+
T Consensus 238 ~lp-iiisgs--EDGTvriWhs~Ty~l-E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 238 ELP-IIISGS--EDGTVRIWNSKTYKL-EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCc-EEEEec--CCccEEEecCcceeh-hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999 588888 799999999988765 5556656678999999998888999888887765
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=248.40 Aligned_cols=287 Identities=14% Similarity=0.219 Sum_probs=232.2
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
+|.++|+-+.||++|+|+|++ |.+..||++......... ....++..+|..+.||| +.++|++++.+..+.+|
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~----~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLK----KTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLW 296 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeee----eeeecccCceEEEEECC-CCCeEEecCchHheeec
Confidence 699999999999999996666 999999998764432111 12233445679999999 99999999999999999
Q ss_pred ECCCCCCCceeEEec-ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCC-CCeEEEEEcCCCCcEEE
Q psy6213 80 NLGQISRSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNT-ESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~ 157 (330)
|..+ +.....+. ++...+.+++|.| |+..+++|+.|+.+..||++ |+.....++.. ..|.+++..+||++ ++
T Consensus 297 Dv~t---gd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~-vl 370 (519)
T KOG0293|consen 297 DVDT---GDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKY-VL 370 (519)
T ss_pred cCCc---chhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcE-EE
Confidence 9998 45444443 3467899999999 99999999999999999997 55555555433 46899999999996 66
Q ss_pred EEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecccc--ceEEEEEc
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIA--SVSRIKWR 235 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~ 235 (330)
+.+.|..|++++..+ ..... +.....+|++++.+.+++++++.-.+..+++||++....+....+|.. .+-.-+|-
T Consensus 371 ~v~~d~~i~l~~~e~-~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREA-RVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred EEecccceeeechhh-hhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 667899999999886 33232 333457899999999999999999999999999997766666666543 35555676
Q ss_pred CCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec-CCCEEEEeecCCeEeeeeccce
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG-DPQLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~~~ 304 (330)
-....++++|+ +|+.|+||+..+++. +..+.+|...|++++|+| +..++|++|.||+|+||.+.+.
T Consensus 449 g~~~~fiaSGS--ED~kvyIWhr~sgkl-l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 449 GGNDKFIASGS--EDSKVYIWHRISGKL-LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CCCcceEEecC--CCceEEEEEccCCce-eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 65555799999 899999999999876 999999999999999999 7889999999999999987643
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=227.80 Aligned_cols=276 Identities=21% Similarity=0.261 Sum_probs=234.6
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|+++|.++.|+-||+| ++|| |.+|++|+...+.+++.+..|..++ .+++.+. ++..+++|+.|..+.+|
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EV-------lD~~~s~-Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEV-------LDAALSS-DNSKFASCGGDKAVQVW 86 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCcee-------eeccccc-cccccccCCCCceEEEE
Confidence 37899999999999999 9999 9999999999999999998887664 6777777 88999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec--CceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC--QESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
|+++ ++..+.+.+|.+.|+.++|+. +...+++|+.|.++++||.++ .++++.+......|.++..+.. .++
T Consensus 87 DV~T---Gkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---eIv 159 (307)
T KOG0316|consen 87 DVNT---GKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---EIV 159 (307)
T ss_pred Eccc---CeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---EEE
Confidence 9999 899999999999999999996 899999999999999999975 4678888888889999988754 599
Q ss_pred EEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccc--eEEEEEc
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIAS--VSRIKWR 235 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--v~~~~~~ 235 (330)
+|+.||+++.||++.+ ...... ...+|+++.|+++++..++++.|+++++.|-.+++.+....+|... -...+++
T Consensus 160 aGS~DGtvRtydiR~G-~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKG-TLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred eeccCCcEEEEEeecc-eeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence 9999999999999984 333322 3468999999999999999999999999999999877777776543 3445666
Q ss_pred CCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCC-eEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDV-VSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
.... .+++++ +||.+++||+..... +..+..+... |.+++++|.-..++++. ++.+..|.
T Consensus 237 qsdt-hV~sgS--EDG~Vy~wdLvd~~~-~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 237 QSDT-HVFSGS--EDGKVYFWDLVDETQ-ISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred ccce-eEEecc--CCceEEEEEecccee-eeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 6555 488888 799999999998876 6777777776 89999999777777765 44556664
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=260.62 Aligned_cols=283 Identities=19% Similarity=0.280 Sum_probs=251.7
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.|...|.++++|.|...+++| .+.++||+.++.++.+++... -+.+..|-| .++++++|...|.+.+||
T Consensus 371 GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~---------y~l~~~Fvp-gd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 371 GHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG---------YILASKFVP-GDRYIVLGTKNGELQVFD 440 (888)
T ss_pred cchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc---------cEEEEEecC-CCceEEEeccCCceEEEE
Confidence 589999999999999888888 999999999999888776543 147889999 999999999999999999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec-----Ccee--------eeeecCCCCeEEEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC-----QEST--------KIFHSNTESVRDVE 147 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~--------~~~~~~~~~v~~~~ 147 (330)
+.. ...+.+.+.|.+.|.+++.+| ++..+++|+.|.+|++||+.- +... ++++ -+..|.|+.
T Consensus 441 laS---~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~ 515 (888)
T KOG0306|consen 441 LAS---ASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVS 515 (888)
T ss_pred eeh---hhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEE
Confidence 998 677778889999999999999 899999999999999999752 1111 2222 456899999
Q ss_pred EcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecccc
Q psy6213 148 FNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIA 227 (330)
Q Consensus 148 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 227 (330)
+||+++ +++++--|.++++|-+.+ -+....+-+|.-||.|+..+||+++++||+.|..|++|-+.-+.+......|..
T Consensus 516 ~Spdgk-~LaVsLLdnTVkVyflDt-lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 516 VSPDGK-LLAVSLLDNTVKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred EcCCCc-EEEEEeccCeEEEEEecc-eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence 999999 589999999999999998 666778889999999999999999999999999999999999989999999999
Q ss_pred ceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecccee
Q psy6213 228 SVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKIF 305 (330)
Q Consensus 228 ~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 305 (330)
.|.++.|-|.... +.+++ .|+.++-||-.+.+. ++.+.+|...|++++.+|+|.+++++|.|..|++|+..+..
T Consensus 594 Svm~V~F~P~~~~-FFt~g--KD~kvKqWDg~kFe~-iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 594 SVMSVQFLPKTHL-FFTCG--KDGKVKQWDGEKFEE-IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred ceeEEEEccccee-EEEec--CcceEEeechhhhhh-heeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 9999999997775 66666 799999999998877 89999999999999999999999999999999999876543
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=253.68 Aligned_cols=241 Identities=27% Similarity=0.509 Sum_probs=214.8
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
..-+|..+.|.| +|+.|++|+..|.+.+|+... ......+..|+.+|.++.|++ ++.++++|..+|.|++|+.+-
T Consensus 95 vkc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcC-CCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccch
Confidence 344589999999 999999999999999999866 555566788999999999998 999999999999999999874
Q ss_pred Cceeeeeec-CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcE
Q psy6213 130 QESTKIFHS-NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTI 208 (330)
Q Consensus 130 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 208 (330)
. .++.+.. |...|++++|+|++. .|+++++||+|+|||... .+....+.+|.-.|.+++|+|...++++++.|..|
T Consensus 170 n-nVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~-~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlV 246 (464)
T KOG0284|consen 170 N-NVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRM-PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLV 246 (464)
T ss_pred h-hhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccC-CchhheeccCCCCcceeccCCccceeEEccCCcee
Confidence 4 4455554 448999999999887 699999999999999998 55567789999999999999999999999999999
Q ss_pred EEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec-CCCEE
Q psy6213 209 KVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG-DPQLF 287 (330)
Q Consensus 209 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 287 (330)
++||.+++.++.....|...|..+.|+|++++ +++++ .|..++++|+++.+. +..+++|...|+++.|+| ...+|
T Consensus 247 KlWDprSg~cl~tlh~HKntVl~~~f~~n~N~-Llt~s--kD~~~kv~DiR~mkE-l~~~r~Hkkdv~~~~WhP~~~~lf 322 (464)
T KOG0284|consen 247 KLWDPRSGSCLATLHGHKNTVLAVKFNPNGNW-LLTGS--KDQSCKVFDIRTMKE-LFTYRGHKKDVTSLTWHPLNESLF 322 (464)
T ss_pred EeecCCCcchhhhhhhccceEEEEEEcCCCCe-eEEcc--CCceEEEEehhHhHH-HHHhhcchhhheeeccccccccce
Confidence 99999999999999999999999999999987 55555 699999999997665 889999999999999999 77899
Q ss_pred EEeecCCeEeeeecc
Q psy6213 288 IASSRVSIIPRAKNI 302 (330)
Q Consensus 288 ~s~~~dg~i~iw~~~ 302 (330)
.+|+.||.|..|...
T Consensus 323 tsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 323 TSGGSDGSVVHWVVG 337 (464)
T ss_pred eeccCCCceEEEecc
Confidence 999999999999644
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=254.25 Aligned_cols=281 Identities=20% Similarity=0.337 Sum_probs=247.4
Q ss_pred ccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC-CcEEEEEC
Q psy6213 5 SPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN-GAVVVWNL 81 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iw~~ 81 (330)
..|+|.+|++.-+.+++| .|...+|.+..-.++..+.....+ |..++|+. .|+.||.|+.. |.+.+|+.
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~-------I~t~~~N~-tGDWiA~g~~klgQLlVweW 337 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQK-------ILTVSFNS-TGDWIAFGCSKLGQLLVWEW 337 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccce-------eeEEEecc-cCCEEEEcCCccceEEEEEe
Confidence 679999999988888888 999999999988877766655433 58999998 99999998765 89999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
.. ...+...++|...+++++++| |++++++|+.||.|++||...+-+..++..|+..|+.+.|+..++ .+++++-
T Consensus 338 qs---EsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssSL 412 (893)
T KOG0291|consen 338 QS---ESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSL 412 (893)
T ss_pred ec---cceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEeec
Confidence 87 667777789999999999999 999999999999999999999999999999999999999999998 6999999
Q ss_pred CCcEEEEecCCCccceeeeccC-CCCeEEEEEcCCCCEEEEEecCCc-EEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 162 NGTIQQWDVRRPEKCFYQFTAH-SGPIFACDWHPEHAWLATASRDKT-IKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
||+|+.||+.. .+..+++... +....+++..|.|.++++|+.|.. |.+|++++++.+....+|.++|.+++|+|.+.
T Consensus 413 DGtVRAwDlkR-YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 413 DGTVRAWDLKR-YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS 491 (893)
T ss_pred CCeEEeeeecc-cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence 99999999998 6667777643 345678999999999999998864 99999999998999999999999999999999
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
++++++ .|.+|++||+-.....+.++ .+...+.+++|+|||+.|++++-||.|.+|+...
T Consensus 492 -~LaS~S--WDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 492 -LLASGS--WDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred -eEEecc--ccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 588888 89999999997665434444 3567799999999999999999999999998543
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=238.35 Aligned_cols=286 Identities=23% Similarity=0.349 Sum_probs=235.0
Q ss_pred CCCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecc--cCCcEEEEEcCCCcE
Q psy6213 1 MAYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSC--IEENHIATGATNGAV 76 (330)
Q Consensus 1 ~~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i 76 (330)
|-|.+-|.++... +++ +++. ||.+++||.. |+.......|.+. +.+++|.- .....|++++.|.++
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~-------ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGP-------IKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcc-------eeeeEEEecCCccceEEEecCCceE
Confidence 4577888888877 566 5555 9999999977 5555555555544 46666643 133469999999999
Q ss_pred EEEECCCCCC-CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee-------------------------cC
Q psy6213 77 VVWNLGQISR-SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR-------------------------CQ 130 (330)
Q Consensus 77 ~iw~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~-------------------------~~ 130 (330)
++|..+.+.. .+......+|+..|.++...+ ++..+++|+.|.+|.+|+.. ++
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 9999876332 233344459999999999997 99999999999999999932 12
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
.++..+.+|..+|.++.|++.+ .+++++.|.+|+.||+.++ .....+. ....+++++++|..++|++|+.|..+++
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~~--v~yS~SwDHTIk~WDletg-~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDAT--VIYSVSWDHTIKVWDLETG-GLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred CceEEecccccceeeEEEcCCC--ceEeecccceEEEEEeecc-cceeeee-cCcceeEeecccccceeeecCCCCceee
Confidence 3466778999999999999944 6999999999999999984 4454544 3567999999999999999999999999
Q ss_pred EeCCCCcc---ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEE
Q psy6213 211 WDLSIKPS---LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLF 287 (330)
Q Consensus 211 ~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 287 (330)
||.+++.. .....+|...|.++.|+|...+++++++ .|+++++||+++.+.|+..+.+|...|.++.|. ++..|
T Consensus 327 ~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S--~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~I 403 (423)
T KOG0313|consen 327 WDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS--YDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLI 403 (423)
T ss_pred cCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe--cCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceE
Confidence 99998743 4566788999999999999999999999 899999999999998899999999999999997 56789
Q ss_pred EEeecCCeEeeeeccce
Q psy6213 288 IASSRVSIIPRAKNIKI 304 (330)
Q Consensus 288 ~s~~~dg~i~iw~~~~~ 304 (330)
++||.|.+|++++....
T Consensus 404 vSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 404 VSGGADNKLRIFKGSPI 420 (423)
T ss_pred EeccCcceEEEeccccc
Confidence 99999999999976543
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=257.15 Aligned_cols=285 Identities=19% Similarity=0.287 Sum_probs=242.9
Q ss_pred CcccceEEEEe-eCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 3 YLSPVHKHGLK-ADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 3 H~~~v~~~~~s-~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
..+.|..|+|- |+.++ +++. .+.+++|+..+..+. .+..|... |.+++... ++.+|++|+.|.++++|
T Consensus 322 ~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~-------vlSL~~~~-~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 322 YNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEA-------VLSLDVWS-SGDLLATGSKDKSVILW 392 (775)
T ss_pred CchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhh-------eeeeeecc-cCcEEEEecCCceEEEE
Confidence 46778888876 45566 5555 999999998887665 44444433 46776333 57899999999999999
Q ss_pred ECCCC-CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-----e----eeeecCCCCeEEEEEc
Q psy6213 80 NLGQI-SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-----T----KIFHSNTESVRDVEFN 149 (330)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~----~~~~~~~~~v~~~~~~ 149 (330)
.+++. ....+.....+|...|.+++++......|++++.|+++++|++...+. . .....|...|++++.+
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 88442 123445566799999999999877788999999999999999975221 1 1234588999999999
Q ss_pred CCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccce
Q psy6213 150 PHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASV 229 (330)
Q Consensus 150 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 229 (330)
|+.+ ++++|+.|.+.++|++.+ .....++.+|...+.++.|+|..+.++|++.|++|+||.+.+..++..+.+|...|
T Consensus 473 ~ndk-LiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aV 550 (775)
T KOG0319|consen 473 PNDK-LIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAV 550 (775)
T ss_pred CCCc-eEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcccee
Confidence 9998 899999999999999995 77888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
..+.|-.+++.++.+++ ||-+++|++++..+ ..++..|.+.|++++-+|.+.++++|+.||.|.+|+..
T Consensus 551 lra~F~~~~~qliS~~a---dGliKlWnikt~eC-~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 551 LRASFIRNGKQLISAGA---DGLIKLWNIKTNEC-EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred EeeeeeeCCcEEEeccC---CCcEEEEeccchhh-hhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 99999999998777765 99999999999987 89999999999999999999999999999999999854
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=240.94 Aligned_cols=275 Identities=20% Similarity=0.319 Sum_probs=234.2
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
...|+|+.+. | ..+++| |++|+|||.++-++...+..|.+. |.|+.| +...+++|+.|.+|++||.
T Consensus 197 skgVYClQYD-D-~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGS-------VLCLqy---d~rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 197 SKGVYCLQYD-D-EKIVSGLRDNTIKIWDKNSLECLKILTGHTGS-------VLCLQY---DERVIVSGSSDSTVRVWDV 264 (499)
T ss_pred CCceEEEEec-c-hhhhcccccCceEEeccccHHHHHhhhcCCCc-------EEeeec---cceEEEecCCCceEEEEec
Confidence 4568888875 3 345555 999999999998888887777665 477777 4579999999999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce---eeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES---TKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
++ ++++.++-.|...|..+.|+ ..++++++.|.++.+||+..... .+.+.+|...|+.+.|+.. ++++
T Consensus 265 ~t---ge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVs 335 (499)
T KOG0281|consen 265 NT---GEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVS 335 (499)
T ss_pred cC---CchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEE
Confidence 99 89999999999999999997 57999999999999999986543 4567789999999998754 5999
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCC
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQR 238 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 238 (330)
++.|.+|++|++.+ ...++++.+|...|.|+.+. ++++++|+.|.+|++||+..+.++....+|+.-|.++.|...
T Consensus 336 ASgDRTikvW~~st-~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k- 411 (499)
T KOG0281|consen 336 ASGDRTIKVWSTST-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK- 411 (499)
T ss_pred ecCCceEEEEeccc-eeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc-
Confidence 99999999999998 78899999999999999885 899999999999999999999889999999999999999655
Q ss_pred CeEEEEeecccCCeEEEEEccCCCcc--------ceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccceeeecc
Q psy6213 239 KFHLASCSLVVDSSVNVWDIRRPYIP--------LASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKIFIASS 309 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i~d~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 309 (330)
. ++++. .||.|++||+.....| +..+..|++.|..+.| |...+++++.|.+|.+|+-..-.....
T Consensus 412 -r-IVSGa--YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 412 -R-IVSGA--YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPSAA 484 (499)
T ss_pred -e-eeecc--ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcccc
Confidence 3 55555 6999999999866543 4556789999999999 678899999999999998665544433
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=259.02 Aligned_cols=219 Identities=23% Similarity=0.398 Sum_probs=198.2
Q ss_pred EEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEE
Q psy6213 26 FKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSF 105 (330)
Q Consensus 26 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~ 105 (330)
+.+.|-+.+.....+..| ..+|..+.|+| +.++|++++.|+++++|.+.+ ......+++|..+|..+.|
T Consensus 433 ~~~~D~~~~~~~~~L~GH-------~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t---~s~~V~y~GH~~PVwdV~F 501 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGH-------SGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDT---WSCLVIYKGHLAPVWDVQF 501 (707)
T ss_pred hhhccccCCceeEEeecC-------CCceeeeeecc-cccceeeccCCcceeeeeccc---ceeEEEecCCCcceeeEEe
Confidence 555555555444444444 44579999999 999999999999999999999 8889999999999999999
Q ss_pred EecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCC
Q psy6213 106 HYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSG 185 (330)
Q Consensus 106 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 185 (330)
+| .|.+||+++.|++.++|......+++.+.+|.+.|.|+.|+|+..| +++|+.|.++++||..+ +..++.|.+|.+
T Consensus 502 ~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 502 AP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNY-VATGSSDRTVRLWDVST-GNSVRIFTGHKG 578 (707)
T ss_pred cC-CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccc-cccCCCCceEEEEEcCC-CcEEEEecCCCC
Confidence 99 8999999999999999999999999999999999999999999996 99999999999999998 677999999999
Q ss_pred CeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 186 PIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 186 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
+|.+++|+|+|++|++|+.||.|.+||+.+++.+.....|.+.+.++.|+.+|.. +++++ .|++|++||+...
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v-Lasgg--~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV-LASGG--ADNSVRLWDLTKV 651 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCE-EEecC--CCCeEEEEEchhh
Confidence 9999999999999999999999999999999888889999999999999999996 66665 6999999998654
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=236.05 Aligned_cols=240 Identities=19% Similarity=0.351 Sum_probs=222.9
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
+...|.|+++.| .+..|++|+.|++++|||+.+ ++...++.+|...|..+++++ ...|+++++.|+.|+.||++.
T Consensus 150 HlgWVr~vavdP-~n~wf~tgs~DrtikIwDlat---g~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 150 HLGWVRSVAVDP-GNEWFATGSADRTIKIWDLAT---GQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred ccceEEEEeeCC-CceeEEecCCCceeEEEEccc---CeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechh
Confidence 344579999999 899999999999999999999 888999999999999999997 889999999999999999999
Q ss_pred CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 130 QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 130 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
.+.++.+.+|-..|.|++.+|.-+ ++++|+.|.++++||+++ ...+..+.+|..+|.++.+.|-...+++|+.|++|+
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRt-r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRT-RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecc-cceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 999999999999999999999988 799999999999999999 778999999999999999999888899999999999
Q ss_pred EEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEE
Q psy6213 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIA 289 (330)
Q Consensus 210 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 289 (330)
+||++.++.......|...+.+++.+|... ++++++ ...|+-|++..+.. ++.+.+|..-|++++...|+ ++++
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~-~fASas---~dnik~w~~p~g~f-~~nlsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKEN-LFASAS---PDNIKQWKLPEGEF-LQNLSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchh-hhhccC---CccceeccCCccch-hhccccccceeeeeeeccCc-eEEE
Confidence 999999988999999999999999999977 488886 88899999999887 66799999999999998776 7888
Q ss_pred eecCCeEeeeecc
Q psy6213 290 SSRVSIIPRAKNI 302 (330)
Q Consensus 290 ~~~dg~i~iw~~~ 302 (330)
|+..|.+.+|+..
T Consensus 377 G~dng~~~fwdwk 389 (460)
T KOG0285|consen 377 GGDNGSIMFWDWK 389 (460)
T ss_pred cCCceEEEEEecC
Confidence 9999999999744
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=248.77 Aligned_cols=275 Identities=20% Similarity=0.361 Sum_probs=239.2
Q ss_pred EEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCc
Q psy6213 10 HGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSK 88 (330)
Q Consensus 10 ~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 88 (330)
++|+ ..+.++.+ ...|++|+..+++........ ...|+++.|++ +|.+|++|..+|.|.|||..+ .+
T Consensus 183 ldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~-------~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~---~k 250 (484)
T KOG0305|consen 183 LDWS-SANVLAVALGQSVYLWSASSGSVTELCSFG-------EELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKE---QK 250 (484)
T ss_pred hhcc-cCCeEEEEecceEEEEecCCCceEEeEecC-------CCceEEEEECC-CCCEEEEeecCCeEEEEehhh---cc
Confidence 5677 34456666 889999999999876665554 33479999999 999999999999999999988 67
Q ss_pred eeEEecc-cccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeee-eecCCCCeEEEEEcCCCCcEEEEEecCCcEE
Q psy6213 89 QERVFND-HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI-FHSNTESVRDVEFNPHSPYAFASVSENGTIQ 166 (330)
Q Consensus 89 ~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~ 166 (330)
....+.. |...|-+++|. ...+.+|+.|+.|..+|++..+.... +.+|...|..+.|++++. .+++|+.|+.+.
T Consensus 251 ~~~~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~ 326 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVF 326 (484)
T ss_pred ccccccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceE
Confidence 7777777 99999999997 68899999999999999998877655 888999999999999999 599999999999
Q ss_pred EEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEe--cCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEE
Q psy6213 167 QWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATAS--RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLA 243 (330)
Q Consensus 167 i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 243 (330)
|||... ..+...+..|...|..++|+| ...+||+|+ .|++|++||..++ ...........|..+.|++..+.+++
T Consensus 327 Iwd~~~-~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 327 IWDGLS-PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-ARIDSVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred eccCCC-ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-cEecccccCCceeeEEEcCCCCEEEE
Confidence 999966 677888889999999999999 567888876 7999999999988 45555667789999999999987676
Q ss_pred EeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccce
Q psy6213 244 SCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 244 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 304 (330)
+.+. .++.|.||+..+.+. +..+.+|...|..++++|||..+++|+.|.++++|+....
T Consensus 405 thG~-s~n~i~lw~~ps~~~-~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 405 THGY-SENQITLWKYPSMKL-VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCC-CCCcEEEEeccccce-eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 6654 578999999998765 8899999999999999999999999999999999987765
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=237.86 Aligned_cols=286 Identities=15% Similarity=0.268 Sum_probs=246.5
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeec-cccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVG-KNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.+-+-|..|||||+|+++| ||.|.+||..+|++...++.... ...-++..|.|++|+. +...+|+|+.||.|++|.
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWR 291 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEE
Confidence 4567899999999997777 99999999999988776665442 2334466789999998 999999999999999999
Q ss_pred CCCCCCCceeEEec-ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 81 LGQISRSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
+.+ +.+++.+. .|...|+++.|+. ++..+++++.|.++++.-+++|++++.+++|.+.|+...|.++|.+ ++++
T Consensus 292 i~t---G~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~-iisa 366 (508)
T KOG0275|consen 292 IET---GQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH-IISA 366 (508)
T ss_pred Eec---chHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCe-EEEe
Confidence 999 88888887 8999999999997 8899999999999999999999999999999999999999999995 8999
Q ss_pred ecCCcEEEEecCCCccceeeecc--CCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCCCCccccce---eccccceEEEE
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTA--HSGPIFACDWHP-EHAWLATASRDKTIKVWDLSIKPSLEYS---INTIASVSRIK 233 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~ 233 (330)
+.||+|++|+.++ ..+..+++. ...+|+++-.-| +...++++...+++.|.++... .+... ....+...+.+
T Consensus 367 SsDgtvkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 367 SSDGTVKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VVRSFSSGKREGGDFINAI 444 (508)
T ss_pred cCCccEEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EEeeeccCCccCCceEEEE
Confidence 9999999999998 677777764 345788888877 4567888989999999998765 22222 22456678889
Q ss_pred EcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 234 WRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.+|.|.++.+.+ +|+.++.|.+.+++. -.++..|+..|.+++-+|..+.||+-++||.+++|++
T Consensus 445 lSpkGewiYcig---ED~vlYCF~~~sG~L-E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 445 LSPKGEWIYCIG---EDGVLYCFSVLSGKL-ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred ecCCCcEEEEEc---cCcEEEEEEeecCce-eeeeecccccccccccCcccchhhhhcccchhhhcCC
Confidence 999999977776 599999999999986 7788899999999999999999999999999999974
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=235.59 Aligned_cols=244 Identities=21% Similarity=0.334 Sum_probs=223.7
Q ss_pred ccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee
Q psy6213 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 49 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~ 128 (330)
++..+|+.+-|+| +...+++++.|++|++||..+ ++....+++|...+.++.|+. .+.++++++.|-.+++||..
T Consensus 106 g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~t---g~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 106 GHRSSVTRVIFHP-SEALVVSASEDATIKVFDTET---GELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred ccccceeeeeecc-CceEEEEecCCceEEEEEccc---hhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeHH
Confidence 3556689999999 999999999999999999999 778889999999999999996 89999999999999999998
Q ss_pred c-CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCc
Q psy6213 129 C-QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKT 207 (330)
Q Consensus 129 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 207 (330)
+ .++++.+.+|...|.++.|-|.|.+ +++++.|.+|+.|++.+ +.++.++.+|...+..+..+.||.++++++.|.+
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~-ilS~srD~tik~We~~t-g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDH-ILSCSRDNTIKAWECDT-GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCe-eeecccccceeEEeccc-ceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 7 5678888899999999999999985 99999999999999999 7889999999999999999999999999999999
Q ss_pred EEEEeCCCCccccceeccccceEEEEEcCC--------------CCeEEEEeecccCCeEEEEEccCCCccceEeecCCC
Q psy6213 208 IKVWDLSIKPSLEYSINTIASVSRIKWRPQ--------------RKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKD 273 (330)
Q Consensus 208 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 273 (330)
+++|-+.++++......|..++.+++|.|. +..++.+++ .|++|++||+.++.+ +.++.+|..
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S--rDktIk~wdv~tg~c-L~tL~ghdn 335 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS--RDKTIKIWDVSTGMC-LFTLVGHDN 335 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec--ccceEEEEeccCCeE-EEEEecccc
Confidence 999999999888888889999999999874 113577777 799999999999977 899999999
Q ss_pred CeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 274 VVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 274 ~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.|.+++|+|.|++|+++.+|+++++|+..
T Consensus 336 wVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 336 WVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred eeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 99999999999999999999999999843
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=220.76 Aligned_cols=285 Identities=15% Similarity=0.219 Sum_probs=239.8
Q ss_pred CCCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 1 MAYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 1 ~~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
|.|..+++.+.|+.+|.+ ++|+ |....+|-..+|+.+..+..|.+.+ .+++..- +.+.+++|+.|.++++
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGav-------W~~Did~-~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAV-------WCCDIDW-DSKHLITGSADQTAKL 78 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceE-------EEEEecC-CcceeeeccccceeEE
Confidence 579999999999999999 8888 9999999998999998888887764 6777776 8899999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec-----CCcEEEEEee-------cCceeeeeecCCCCeEEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ-----DGTMRLFDIR-------CQESTKIFHSNTESVRDV 146 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-----d~~i~i~d~~-------~~~~~~~~~~~~~~v~~~ 146 (330)
||+++ ++++..++ ...+|..+.|++ ++++++.... .+.|.++|++ ..++...+..+.+.++.+
T Consensus 79 WDv~t---Gk~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a 153 (327)
T KOG0643|consen 79 WDVET---GKQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA 153 (327)
T ss_pred EEcCC---CcEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence 99999 77777765 468899999998 8887776654 4679999998 445677777788999999
Q ss_pred EEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccc
Q psy6213 147 EFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI 226 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 226 (330)
-|.|-++ .+++|.+||.|.+||++++.+.+...+.|...|+.+.++|+..++++++.|.+-++||.++. .........
T Consensus 154 ~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te 231 (327)
T KOG0643|consen 154 LWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTE 231 (327)
T ss_pred eecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce-eeEEEeeec
Confidence 9999999 59999999999999999977888888889999999999999999999999999999999998 445555667
Q ss_pred cceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC-----------ccceEeecCCCCeEEEEEecCCCEEEEeecCCe
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY-----------IPLASFTEHKDVVSGLAWRGDPQLFIASSRVSI 295 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 295 (330)
.|+++.+++|....++.+++. +-..|.-=+.+.++ ..+...++|-++|++++|+|+|+..++|++||.
T Consensus 232 ~PvN~aaisP~~d~VilgGGq-eA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 232 RPVNTAAISPLLDHVILGGGQ-EAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred ccccceecccccceEEecCCc-eeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence 899999999998887777652 11222222222221 126678899999999999999999999999999
Q ss_pred Eeeeec
Q psy6213 296 IPRAKN 301 (330)
Q Consensus 296 i~iw~~ 301 (330)
|++..-
T Consensus 311 VR~h~F 316 (327)
T KOG0643|consen 311 VRLHHF 316 (327)
T ss_pred EEEEEe
Confidence 999743
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=227.55 Aligned_cols=246 Identities=20% Similarity=0.295 Sum_probs=213.4
Q ss_pred cccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEe
Q psy6213 48 INLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDI 127 (330)
Q Consensus 48 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~ 127 (330)
..+...|+.+.|+| ++.+||+|+.|..|.+|+.... .+....+++|+++|..+.|.+ +++.+++++.|.+++.||.
T Consensus 44 ~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred CCCcceEEEEEECC-CCCeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEec
Confidence 34455589999999 9999999999999999997653 344456779999999999998 9999999999999999999
Q ss_pred ecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCc
Q psy6213 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKT 207 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 207 (330)
++++.++.++.|..-++++.-+.-|..++.+++.|+++++||+++ ...+++++ .+.+++++.|..++..+.+|+-|+.
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhccc-cceeEEEEEecccccceeeccccCc
Confidence 999999999999999999997777888999999999999999997 56666665 4678999999999999999999999
Q ss_pred EEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC---CccceEeecCCC----CeEEEEE
Q psy6213 208 IKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP---YIPLASFTEHKD----VVSGLAW 280 (330)
Q Consensus 208 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~----~v~~~~~ 280 (330)
|++||++.........+|..+|+.+..+|+|.++ .+-+ .|.++++||++-. +..+..+.+|.. .....+|
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~l-lsns--Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFL-LSNS--MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCcc-cccc--ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 9999999998888889999999999999999984 4444 6999999999743 222566666542 4567899
Q ss_pred ecCCCEEEEeecCCeEeeeecc
Q psy6213 281 RGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 281 ~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+|++..+.+++.|..+++|+..
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~ 296 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTT 296 (338)
T ss_pred cCCCCccccccccceEEEeecc
Confidence 9999999999999999999853
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=257.49 Aligned_cols=281 Identities=20% Similarity=0.326 Sum_probs=246.1
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
+.+|..++|+|...++.++ .|.|++||..-+.++..+.-|.+. |..++|+| ...++++|+.|-.|++|+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGp-------VRgv~FH~-~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGP-------VRGVDFHP-TQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCc-------cceeeecC-CCCeEEecCCccEEEEEec
Confidence 5678999999999995555 999999999999888877766655 58999999 9999999999999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
.+ .+++.++.+|-+.|..+.|++ .-..+++++.|.+|+||+..+++++..+.+|...|.|.+|+|... ++++++-
T Consensus 81 k~---rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaSL 155 (1202)
T KOG0292|consen 81 KT---RRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSASL 155 (1202)
T ss_pred cc---ceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEecc
Confidence 88 899999999999999999998 889999999999999999999999999999999999999999888 7999999
Q ss_pred CCcEEEEecCCC-------c---------------------cceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeC
Q psy6213 162 NGTIQQWDVRRP-------E---------------------KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 162 dg~i~i~d~~~~-------~---------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 213 (330)
|.+|++||+..- + -....+++|...|+-++|+|.-.++++|+.|..|++|..
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 235 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe
Confidence 999999997521 0 012356789999999999999999999999999999998
Q ss_pred CCCcc--ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEee
Q psy6213 214 SIKPS--LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 214 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
...+. .....+|...|+++.|+|.... +.+.+ +|++|++||+.+... ++.++...+.-+.++-+|..+++++|
T Consensus 236 netKaWEvDtcrgH~nnVssvlfhp~q~l-IlSns--EDksirVwDm~kRt~-v~tfrrendRFW~laahP~lNLfAAg- 310 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYNNVSSVLFHPHQDL-ILSNS--EDKSIRVWDMTKRTS-VQTFRRENDRFWILAAHPELNLFAAG- 310 (1202)
T ss_pred ccccceeehhhhcccCCcceEEecCccce-eEecC--CCccEEEEecccccc-eeeeeccCCeEEEEEecCCcceeeee-
Confidence 76543 5566789999999999998885 66666 799999999998765 88888778899999999999877755
Q ss_pred cCCeEeeeecc
Q psy6213 292 RVSIIPRAKNI 302 (330)
Q Consensus 292 ~dg~i~iw~~~ 302 (330)
.|+-+.+|+..
T Consensus 311 HDsGm~VFkle 321 (1202)
T KOG0292|consen 311 HDSGMIVFKLE 321 (1202)
T ss_pred cCCceEEEEEc
Confidence 56667777654
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=255.39 Aligned_cols=243 Identities=26% Similarity=0.483 Sum_probs=211.8
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEe-ec
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDI-RC 129 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~ 129 (330)
..+|.++.|+| +++.+++++.++.+++|+...... .....+.+|...|.+++|+| ++.++++++.|++|++||+ ..
T Consensus 159 ~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 159 CPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cCceEEEEEcC-CCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCC
Confidence 45579999999 999999999999999999966221 25666689999999999999 8999999999999999999 55
Q ss_pred CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 130 QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 130 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
+..++++++|...|++++|+|+++ ++++|+.|++|++||+++ +++...+.+|.+.|++++|++++++|++++.|+.|+
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred CeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 588999999999999999999995 899999999999999998 889999999999999999999999999999999999
Q ss_pred EEeCCCCcc--ccceecccc--ceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCC---eEEEEEec
Q psy6213 210 VWDLSIKPS--LEYSINTIA--SVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDV---VSGLAWRG 282 (330)
Q Consensus 210 i~d~~~~~~--~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~---v~~~~~~~ 282 (330)
+||+.++.. ......+.. +++.+.|+|++.+++.+. .|+.+++||+..+.. .....+|... +.+...++
T Consensus 314 vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 389 (456)
T KOG0266|consen 314 VWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKS-VGTYTGHSNLVRCIFSPTLST 389 (456)
T ss_pred EEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcc-eeeecccCCcceeEecccccC
Confidence 999999962 233333333 699999999999966666 499999999998876 6777777764 44455677
Q ss_pred CCCEEEEeecCCeEeeeecc
Q psy6213 283 DPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 283 ~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+.++++++.|+.|++|...
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred CCCeEEEEeCCceEEEEeCC
Confidence 99999999999999999865
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=249.15 Aligned_cols=239 Identities=23% Similarity=0.407 Sum_probs=222.6
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
.|.++.++| ....++++-.+|.|.|||.++ ...++.+.....+|.+..|-+ ..+.+++|+.|..|++|+.++++.
T Consensus 15 RVKsVd~HP-tePw~la~LynG~V~IWnyet---qtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ek 89 (794)
T KOG0276|consen 15 RVKSVDFHP-TEPWILAALYNGDVQIWNYET---QTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEK 89 (794)
T ss_pred ceeeeecCC-CCceEEEeeecCeeEEEeccc---ceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEeccccee
Confidence 368999999 999999999999999999998 788888888899999999997 899999999999999999999999
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEecCCcEEEE
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRDKTIKVW 211 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~ 211 (330)
+..++.|.+.|++++.+|..++ ++++++|-+|++||-+..-.+.+++++|..-|++++|+| |.+.+++++-|++|++|
T Consensus 90 V~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 90 VKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred eEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 9999999999999999999995 899999999999999998889999999999999999999 67899999999999999
Q ss_pred eCCCCccccceeccccceEEEEEcCCC--CeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEE
Q psy6213 212 DLSIKPSLEYSINTIASVSRIKWRPQR--KFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIA 289 (330)
Q Consensus 212 d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 289 (330)
.+..........+|...|+++.+-+.| ++ +++++ +|..++|||..+..+ ++++.+|...|..+.|+|.-..+++
T Consensus 169 slgs~~~nfTl~gHekGVN~Vdyy~~gdkpy-lIsga--DD~tiKvWDyQtk~C-V~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 169 SLGSPHPNFTLEGHEKGVNCVDYYTGGDKPY-LISGA--DDLTIKVWDYQTKSC-VQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred EcCCCCCceeeeccccCcceEEeccCCCcce-EEecC--CCceEEEeecchHHH-HHHhhcccccceEEEecCCCcEEEE
Confidence 999987888888999999999998765 66 44555 699999999999876 9999999999999999999999999
Q ss_pred eecCCeEeeeec
Q psy6213 290 SSRVSIIPRAKN 301 (330)
Q Consensus 290 ~~~dg~i~iw~~ 301 (330)
||+||+++||..
T Consensus 245 gsEDGTvriWhs 256 (794)
T KOG0276|consen 245 GSEDGTVRIWNS 256 (794)
T ss_pred ecCCccEEEecC
Confidence 999999999963
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=239.43 Aligned_cols=278 Identities=18% Similarity=0.263 Sum_probs=236.1
Q ss_pred cccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
.++|.+++|+|...+ ++.. .-.+.||+..+......+.- ....+.+++|-. +|.+||+|...|.|++||.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~sr-------Fk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~ 97 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSR-------FKDVVYSVDFRS-DGRLLAAGDESGHVKVFDM 97 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHh-------hccceeEEEeec-CCeEEEccCCcCcEEEecc
Confidence 367999999999998 5555 89999999887654442221 112268899998 9999999999999999996
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
.+ ...+..+..|+.++..+.|+|+++..+++|+.|+.+++||+.+......+.+|++.|+|.+|+|..++++++|+.
T Consensus 98 k~---r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 98 KS---RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred cc---HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCC
Confidence 55 567788999999999999999999999999999999999999888766888999999999999999999999999
Q ss_pred CCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc-ceeccccceEEEEEcCCCCe
Q psy6213 162 NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKF 240 (330)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 240 (330)
||.|++||++.....+..+. |..+|.++.+-|.|..+++++. ..+++||+.++.+.. ....|...|+|+++..++..
T Consensus 175 Dg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~r 252 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTR 252 (487)
T ss_pred CceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCce
Confidence 99999999998555555665 8999999999999999999887 589999999665544 44448999999999999988
Q ss_pred EEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 241 HLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 241 l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
|++++ .|+.+++||+.+.+. +..+. -.++|.+++.+|+++.++.|-.||.+.+=
T Consensus 253 LlS~s---LD~~VKVfd~t~~Kv-v~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 253 LLSGS---LDRHVKVFDTTNYKV-VHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred Eeecc---cccceEEEEccceEE-EEeee-cccceeeEEecCCCceEEEecccceeeee
Confidence 55555 699999999777654 55554 46899999999999999999999988775
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=216.13 Aligned_cols=274 Identities=14% Similarity=0.237 Sum_probs=234.5
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|...|.+++|+.+|..+++| |+++.+|+++..++....... .+..+|..++|+|...+++++++.|..|++|
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~-----gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYR-----GHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhccc-----CCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 478899999999999998888 999999999987655443322 2334468899999889999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|... .++........+. .-+.|+| ++++++.++.|..|...|.++.+.....+ ....+..+.|+.++. +|+..
T Consensus 93 d~r~---~k~~~~i~~~~en-i~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd-~Fflt 165 (313)
T KOG1407|consen 93 DIRS---GKCTARIETKGEN-INITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSND-LFFLT 165 (313)
T ss_pred Eecc---CcEEEEeeccCcc-eEEEEcC-CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCC-EEEEe
Confidence 9998 7777776654444 4578998 89999999999999999999888777665 556688899997666 67777
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
...|+|.|..... -+++..+++|.....|+.|+|+|++||+|+.|-.+.+||+...-+......+.-+|..+.|+.+|+
T Consensus 166 ~GlG~v~ILsyps-Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 166 NGLGCVEILSYPS-LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred cCCceEEEEeccc-cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc
Confidence 7789999999886 788999999999999999999999999999999999999998877888888899999999999999
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
+ +|+++ +|-.|-|=+++++.. +..+ .+.++...++|+|...+||-++.|
T Consensus 245 ~-lASaS--EDh~IDIA~vetGd~-~~eI-~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 245 M-LASAS--EDHFIDIAEVETGDR-VWEI-PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred e-eeccC--ccceEEeEecccCCe-EEEe-eccCCceeEEecCCCceeeEEecC
Confidence 6 88888 799999999999987 5444 357889999999999999988876
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=214.98 Aligned_cols=278 Identities=18% Similarity=0.247 Sum_probs=222.8
Q ss_pred cccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC--CCcEEEE
Q psy6213 4 LSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT--NGAVVVW 79 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iw 79 (330)
.+.|+++.|+++|.+ +++. |..++|||..+++...+...+. +.|..++|.. ..+.++.++. |.+|+..
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk-------yG~~~~~Fth-~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK-------YGVDLACFTH-HSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc-------ccccEEEEec-CCceEEEccCCCCCceEEE
Confidence 578999999999999 6656 9999999999998887665443 3357788876 5555555555 7899999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
++.+ .+.++.+.+|...|.+++.+| .++.+++++.|++|++||++..++...+.....+ .++|.|+|- ++|++
T Consensus 86 sl~d---NkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GL-ifA~~ 158 (311)
T KOG1446|consen 86 SLHD---NKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGL-IFALA 158 (311)
T ss_pred Eeec---CceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCc-EEEEe
Confidence 9998 899999999999999999999 6799999999999999999988887777654443 478999997 67777
Q ss_pred ecCCcEEEEecCCC-ccceeeec---cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecccc---ceEEE
Q psy6213 160 SENGTIQQWDVRRP-EKCFYQFT---AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIA---SVSRI 232 (330)
Q Consensus 160 ~~dg~i~i~d~~~~-~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~~ 232 (330)
.....|++||++.- +.+..++. +.....+.+.|+|+|++++.++..+.+++.|.-.+........+.. -....
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred cCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 77779999999974 33444443 3356789999999999999999999999999988854443333222 23678
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec-CCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE-HKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+|+||+++++.+. .||+|.+|+++++.. +..+.+ +.+++.++.|+|.-.+++++ +..+.+|-+.
T Consensus 239 ~ftPds~Fvl~gs---~dg~i~vw~~~tg~~-v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 239 TFTPDSKFVLSGS---DDGTIHVWNLETGKK-VAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred EECCCCcEEEEec---CCCcEEEEEcCCCcE-eeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 9999999855555 599999999999987 667766 78999999999977666655 5678888543
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=232.52 Aligned_cols=262 Identities=26% Similarity=0.397 Sum_probs=221.9
Q ss_pred cccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC-------CceeEEecccccceeEEEEEecCCCEEEEEecCC
Q psy6213 48 INLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR-------SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG 120 (330)
Q Consensus 48 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~ 120 (330)
..+...|+.+.+.|++...+|+++..+.+.|||..+... ..+...+.+|.+.-.+++|++.....|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 455667899999999999999999999999999876322 1233478899998899999998899999999999
Q ss_pred cEEEEEeecCc-------eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCC-CccceeeeccCCCCeEEEEE
Q psy6213 121 TMRLFDIRCQE-------STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR-PEKCFYQFTAHSGPIFACDW 192 (330)
Q Consensus 121 ~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~i~~~~~ 192 (330)
+|++||++... +...+.+|...|..++|++....+|++++.|+.+.|||+|+ ..++.....+|.+.+++++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999997543 34567889999999999999988999999999999999996 35667788899999999999
Q ss_pred cC-CCCEEEEEecCCcEEEEeCCCCcc-ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC--------
Q psy6213 193 HP-EHAWLATASRDKTIKVWDLSIKPS-LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY-------- 262 (330)
Q Consensus 193 ~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~-------- 262 (330)
+| ++..||+|+.|++|.+||+|+... +.....|...|.++.|+|....++++++ .|+.+.+||+..-.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG--TDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc--cCCcEEEEeccccccccChhhh
Confidence 99 667899999999999999998865 5556678999999999999999999998 89999999996422
Q ss_pred -----ccceEeecCCCCeEEEEEecC-CCEEEEeecCCeEeeeeccceeeecccc
Q psy6213 263 -----IPLASFTEHKDVVSGLAWRGD-PQLFIASSRVSIIPRAKNIKIFIASSRV 311 (330)
Q Consensus 263 -----~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 311 (330)
.++....+|...|..+.|+|+ ...|+++++|+.+.||+...........
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~~~e~~ 413 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENIYNPEDP 413 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccccCcccc
Confidence 224667799999999999995 5578888999999999988766554443
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=223.74 Aligned_cols=293 Identities=17% Similarity=0.289 Sum_probs=235.5
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCc----ceeeeeceee-------ccccccccceeeeeecccCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDT----EFVETHNLRV-------GKNINLNFSCNDVAWSCIEENHIA 68 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~----~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~l~ 68 (330)
.|.+++++.+|+|||.++++| |..|+|.|++.. +..+...... .....+...|+++.|+| ....|+
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~ILi 188 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETILI 188 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhheEE
Confidence 599999999999999997777 999999999731 1111111100 11223455689999999 999999
Q ss_pred EEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee---cCCCCeEE
Q psy6213 69 TGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH---SNTESVRD 145 (330)
Q Consensus 69 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~ 145 (330)
+|+.|++|+++|+......+..+.+. ...+|.++.|+| .|.++++|.....+++||+++.++...-. .|.+.|++
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~ 266 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQ 266 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeE
Confidence 99999999999998743333333333 457899999999 99999999999999999999988755432 47889999
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec-cCC-CCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee
Q psy6213 146 VEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT-AHS-GPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI 223 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 223 (330)
+.+++.++ +.++++.||.|++||--+ .+++.++. .|. ..|.+..|..+|+++++.+.|..+++|.+.+++.+....
T Consensus 267 V~Ys~t~~-lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 267 VRYSSTGS-LYVTASKDGAIKLWDGVS-NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred EEecCCcc-EEEEeccCCcEEeecccc-HHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 99999999 899999999999999877 66777664 454 469999999999999999999999999999997766554
Q ss_pred cc-----ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEee
Q psy6213 224 NT-----IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPR 298 (330)
Q Consensus 224 ~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 298 (330)
+. ...-+...|+....|++.--. ..+.+.-||.++.........+|.+.+..+.-+|.+..+++|+.|-.+++
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDE--as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDE--ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEcccc--ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 43 123456678888888776655 67899999999887644455689999999999999999999999999999
Q ss_pred eec
Q psy6213 299 AKN 301 (330)
Q Consensus 299 w~~ 301 (330)
|..
T Consensus 423 Wyr 425 (430)
T KOG0640|consen 423 WYR 425 (430)
T ss_pred eee
Confidence 964
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=212.58 Aligned_cols=239 Identities=16% Similarity=0.223 Sum_probs=211.9
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
...|.++.|+- +|++.++++.|.+|++|+... +..++++.+|...|..++.+. +...|++|+.|..+.+||+++|
T Consensus 17 qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~r---g~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 17 QGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLR---GALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred ccceEEEEEcc-CCCEEEEcCCCceEEeecccc---cceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEcccC
Confidence 34479999998 999999999999999999887 899999999999999999996 8899999999999999999999
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCC-ccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP-EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
+..+.+.+|.+.|+.++|+.+.. ++++|+.|..+++||.++. .++++.+......|.++... +..+++|+.||+++
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVR 168 (307)
T ss_pred eeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEE
Confidence 99999999999999999999988 8999999999999999863 45777888888899999986 66899999999999
Q ss_pred EEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeE--EEEEecCCCEE
Q psy6213 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVS--GLAWRGDPQLF 287 (330)
Q Consensus 210 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l 287 (330)
.||++.++...-. ...+|+++.|+++++..++++ .++++++.|-.+++. +..+.+|...=. ..+++.....+
T Consensus 169 tydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGkl-L~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 169 TYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKL-LKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred EEEeecceeehhh--cCCcceeEEecCCCCEEEEee---ccceeeecccchhHH-HHHhcccccceeeeeeeecccceeE
Confidence 9999998544333 357899999999999988887 599999999999987 888999986543 44666777899
Q ss_pred EEeecCCeEeeeeccc
Q psy6213 288 IASSRVSIIPRAKNIK 303 (330)
Q Consensus 288 ~s~~~dg~i~iw~~~~ 303 (330)
++|++||.+++|++..
T Consensus 243 ~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVD 258 (307)
T ss_pred EeccCCceEEEEEecc
Confidence 9999999999998653
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=231.42 Aligned_cols=253 Identities=21% Similarity=0.437 Sum_probs=213.3
Q ss_pred CCCcccceEEEEeeCCCe-eecC--CCeEEEEEcCCcceeee--------eceeeccccccccceeeeeecccCCcEEEE
Q psy6213 1 MAYLSPVHKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVET--------HNLRVGKNINLNFSCNDVAWSCIEENHIAT 69 (330)
Q Consensus 1 ~~H~~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 69 (330)
+-|.+.|+.+.+.|+... ++++ .+.+.|||.....-... +.+..+. ..-.+++|++.....|++
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~-----~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE-----KEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec-----ccccccccccccceeEee
Confidence 358999999999999998 5555 99999999876322221 1121111 113789999988899999
Q ss_pred EcCCCcEEEEECCCCCC----CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee--cCceeeeeecCCCCe
Q psy6213 70 GATNGAVVVWNLGQISR----SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR--CQESTKIFHSNTESV 143 (330)
Q Consensus 70 ~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~v 143 (330)
++.|+.|++||+..... ......+.+|...|..++|++....+|++++.|+.+.|||++ +.++.....+|.+++
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 99999999999987443 345667889999999999999999999999999999999999 566677788899999
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCcc----
Q psy6213 144 RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPS---- 218 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~---- 218 (330)
.|++|+|-+.++||+|+.|++|++||+|+...++..+.+|...|.++.|+|. ...|++++.|+.+.+||+..-..
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 9999999999999999999999999999988999999999999999999995 57899999999999999864321
Q ss_pred ----------ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 219 ----------LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 219 ----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
+..-.+|...|..+.|+|+.++++++.+ +|+.+.||.+..
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva--eDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA--EDNILQIWQMAE 405 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEec--CCceEEEeeccc
Confidence 1233457788999999999999999999 899999999863
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=247.68 Aligned_cols=291 Identities=18% Similarity=0.223 Sum_probs=207.6
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeecccc---ccccceeeeeecc--cCCc--EEEEEcC
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNI---NLNFSCNDVAWSC--IEEN--HIATGAT 72 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~--~~~~--~l~~~~~ 72 (330)
+|.++|++|.||+||+| +++| |+.|+||.+...+............. .....+..+.-++ ..+. ..-.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 69999999999999999 5555 99999999877443211111100000 0000000000000 0001 1111222
Q ss_pred CCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCC
Q psy6213 73 NGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHS 152 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 152 (330)
...+.+-+....-..++...+.+|.+.|.++.|+ ..++|++++.|.+|++|++...+++..|. |.+.|+|++|+|.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccC
Confidence 2222221111111246778889999999999999 58899999999999999999999999998 99999999999988
Q ss_pred CcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccce--------ec
Q psy6213 153 PYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYS--------IN 224 (330)
Q Consensus 153 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~ 224 (330)
++.|++|+-||.|+||++.. .+. .....-..-|++++|.|+|++.++|+.+|..++|+....+..... ..
T Consensus 422 DryFiSGSLD~KvRiWsI~d-~~V-v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISD-KKV-VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred CCcEeecccccceEEeecCc-Cee-EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 87899999999999999986 443 333344588999999999999999999999999999876431111 01
Q ss_pred cccceEEEEEcCCCCe-EEEEeecccCCeEEEEEccCCCccceEeecCC--CCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 225 TIASVSRIKWRPQRKF-HLASCSLVVDSSVNVWDIRRPYIPLASFTEHK--DVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 225 ~~~~v~~~~~~~~~~~-l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
....|+.+.|.|...- ++++.. |..|+|||.+.... +..+.++. ..-....|+.||++|+++++|..|++|+.
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSn---DSrIRI~d~~~~~l-v~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSN---DSRIRIYDGRDKDL-VHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecC---CCceEEEeccchhh-hhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 1237999999987653 566664 99999999977655 66666544 23456789999999999999999999986
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=216.53 Aligned_cols=243 Identities=18% Similarity=0.342 Sum_probs=208.6
Q ss_pred cccceEEEEeeCCCe--eecC-CCeEEEEEcCCcc-eeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 4 LSPVHKHGLKADNGL--AQPS-RNVFKIFLIKDTE-FVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~--~~~g-d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.+.++.++|+++... +++. ||.++|||+.... .+..++-| ...|.++.|++..+..+++++.|++|++|
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH-------~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEH-------KREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhh-------hhheEEeccccccceeEEeeccCCceEee
Confidence 467899999997665 5555 9999999965432 22223333 23369999999888889999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
+... .+.+.++.+|...|...+|+|..++++++++.|+.+++||++.......+..|...+.++.|+.-+.+++++|
T Consensus 133 ~~~r---~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 133 DPNR---PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred cCCC---CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence 9877 7888999999999999999999999999999999999999987655556888999999999999999999999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCcc-ccceeccccceEEEEEcCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPS-LEYSINTIASVSRIKWRPQ 237 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~ 237 (330)
+.|+.|+.||+++-..++..+.+|.-.|..++|+|. ...|++++.|=+++|||...+.. +.....|.+-+..+.|++-
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc
Confidence 999999999999988899999999999999999995 46899999999999999986544 4455567888999999998
Q ss_pred CCeEEEEeecccCCeEEEEEc
Q psy6213 238 RKFHLASCSLVVDSSVNVWDI 258 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~ 258 (330)
....+|+++ .|+.++||+.
T Consensus 290 ~~~~vAs~g--WDe~l~Vw~p 308 (311)
T KOG0277|consen 290 DPGQVASTG--WDELLYVWNP 308 (311)
T ss_pred cCceeeecc--cccceeeecc
Confidence 777899999 8999999984
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=218.52 Aligned_cols=279 Identities=19% Similarity=0.278 Sum_probs=236.2
Q ss_pred CCcccceEEEEee---CCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcE
Q psy6213 2 AYLSPVHKHGLKA---DNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAV 76 (330)
Q Consensus 2 ~H~~~v~~~~~s~---~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 76 (330)
.|+.+|-.++||| +|-+ ++++ |+.=.+-+-++|..+..+..|.+.+ .....+. +..+-|+++.|=+-
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgav-------w~~~l~~-na~~aasaaadfta 83 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAV-------WSATLNK-NATRAASAAADFTA 83 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcce-------eeeecCc-hhhhhhhhcccchh
Confidence 5899999999986 6777 6666 9999999999999999999888765 5556665 77788899999999
Q ss_pred EEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc-eeeeeecCCCCeEEEEEcCCCCcE
Q psy6213 77 VVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE-STKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
++||.-+ +..+..+ .|+.-|..++|+. +.++|++|+.+..+++||++..+ +...+.+|.+.|+.+.|....+ .
T Consensus 84 kvw~a~t---gdelhsf-~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~-~ 157 (334)
T KOG0278|consen 84 KVWDAVT---GDELHSF-EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK-C 157 (334)
T ss_pred hhhhhhh---hhhhhhh-hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc-e
Confidence 9999888 5666665 4889999999996 99999999999999999998654 5677889999999999999888 5
Q ss_pred EEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEc
Q psy6213 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWR 235 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 235 (330)
+++++.|++||+||.++ +..++++. .+.+|+++.++++|.+|.++. .+.|.+||..+. .+.........|.+..++
T Consensus 158 iLSSadd~tVRLWD~rT-gt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf-~~lKs~k~P~nV~SASL~ 233 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRT-GTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF-GLLKSYKMPCNVESASLH 233 (334)
T ss_pred EEeeccCCceEEEEecc-CcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccc-cceeeccCcccccccccc
Confidence 88889999999999999 56666666 467899999999998776654 478999999988 344445556789999999
Q ss_pred CCCCeEEEEeecccCCeEEEEEccCCCccceE-eecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDIRRPYIPLAS-FTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
|+... +++++ +|..++.||..++.. +.. ..+|.++|.++.|+|||..-++||+||+|++|+..
T Consensus 234 P~k~~-fVaGg--ed~~~~kfDy~TgeE-i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 234 PKKEF-FVAGG--EDFKVYKFDYNTGEE-IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred CCCce-EEecC--cceEEEEEeccCCce-eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 99976 44444 699999999999987 445 48999999999999999999999999999999854
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=210.48 Aligned_cols=241 Identities=21% Similarity=0.358 Sum_probs=202.2
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|+..|++++|+|.|++|+++ |.++.||.-..+++.....+.. +...|.+++|++ +|++||+++.|..|-||
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-----HEnEVK~Vaws~-sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG-----HENEVKCVAWSA-SGNYLATCSRDKSVWIW 132 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeec-----cccceeEEEEcC-CCCEEEEeeCCCeEEEE
Confidence 489999999999999996666 9999999988776655433332 233479999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee---cCceeeeeecCCCCeEEEEEcCCCCcEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR---CQESTKIFHSNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 156 (330)
......+..+...+..|...|..+.|+| ...+|++++.|.+|++|+-. .-++..++.+|...|.+++|+|.|. .+
T Consensus 133 e~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl 210 (312)
T KOG0645|consen 133 EIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RL 210 (312)
T ss_pred EecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eE
Confidence 9998777889999999999999999999 88999999999999999876 2357889999999999999999998 49
Q ss_pred EEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc-------ccceeccccce
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS-------LEYSINTIASV 229 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~v 229 (330)
+++++|++++||-.... .-..|..++..+.|. ...|++++.|+.|++|....... ......|...|
T Consensus 211 ~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred EEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence 99999999999987641 122377899999998 55799999999999998764311 12334477799
Q ss_pred EEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
++++|.|....++++++ .||.+++|.+.
T Consensus 284 NsV~w~p~~~~~L~s~~--DDG~v~~W~l~ 311 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGG--DDGIVNFWELE 311 (312)
T ss_pred ceEEEcCCCCCceeecC--CCceEEEEEec
Confidence 99999997555688887 79999999874
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=258.66 Aligned_cols=270 Identities=15% Similarity=0.250 Sum_probs=215.5
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC-C----ceeEEecccc
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR-S----KQERVFNDHK 97 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~----~~~~~~~~~~ 97 (330)
+|.+++|+....+..... ..+....+...|.+++|+| +++++|+|+.|+.|++|+...... . .....+. +.
T Consensus 457 ~gl~~~~~~~~~~~~~~~--~~~~~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~ 532 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--KQGDLLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SR 532 (793)
T ss_pred hhhhhhhcccceEEEEee--ccccccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-cc
Confidence 566788887765443322 2233444566689999999 999999999999999999754110 0 1122233 34
Q ss_pred cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccce
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF 177 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 177 (330)
..+.+++|+|..+.+|++++.||+|++||+.+++.+..+.+|...|.+++|+|.+..+|++|+.||.|++||+++ ...+
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~ 611 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSI 611 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEE
Confidence 689999999867889999999999999999999999999999999999999974433799999999999999987 5556
Q ss_pred eeeccCCCCeEEEEEc-CCCCEEEEEecCCcEEEEeCCCCcc-ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEE
Q psy6213 178 YQFTAHSGPIFACDWH-PEHAWLATASRDKTIKVWDLSIKPS-LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNV 255 (330)
Q Consensus 178 ~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i 255 (330)
..+.. ...+.++.|+ +++.+|++|+.||.|++||++.... ......|...|..+.|. ++.+ +++++ .|+.|++
T Consensus 612 ~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~-lvs~s--~D~~iki 686 (793)
T PLN00181 612 GTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSST-LVSSS--TDNTLKL 686 (793)
T ss_pred EEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCE-EEEEE--CCCEEEE
Confidence 66664 4678999995 5799999999999999999987653 44455788899999997 5665 44455 5999999
Q ss_pred EEccCC-----CccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 256 WDIRRP-----YIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 256 ~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
||++.+ ..++..+.+|...+..++|+|++++|++|+.||.|++|+..
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 999753 23477888999999999999999999999999999999853
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=250.77 Aligned_cols=293 Identities=18% Similarity=0.255 Sum_probs=236.9
Q ss_pred CcccceEEEEeeCCCeeecC----CCeEEEEEcCCc-----ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC
Q psy6213 3 YLSPVHKHGLKADNGLAQPS----RNVFKIFLIKDT-----EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN 73 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g----d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 73 (330)
+...|.+++.+|||..+++| |+.++||+.+.- +......-+......+...|+|+.|+| ++.+||+|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeeccCc
Confidence 34678999999999995555 889999998651 111112222233445667789999999 99999999999
Q ss_pred CcEEEEECCC---------------CCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec
Q psy6213 74 GAVVVWNLGQ---------------ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS 138 (330)
Q Consensus 74 g~i~iw~~~~---------------~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 138 (330)
+.|.||+... .+..+....+.+|+..|..++|+| ++.+|++++.|++|.+||..+.+.+..+++
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeec
Confidence 9999999872 112456778899999999999999 999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccC------CCCeEEEEEcCCCCEEEEEe----cCCcE
Q psy6213 139 NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH------SGPIFACDWHPEHAWLATAS----RDKTI 208 (330)
Q Consensus 139 ~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~----~dg~i 208 (330)
|.+.|..+.|.|-|+| |++-+.|++|++|++.+ ....+.+..+ ......+.|+|||.+|++.. .-.++
T Consensus 170 H~s~VKGvs~DP~Gky-~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKY-FASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred ccccccceEECCccCe-eeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 9999999999999995 99999999999999765 3444444433 23478899999999999875 23468
Q ss_pred EEEeCCCCccccceeccccceEEEEEcCC--------C-------Ce-EEEEeecccCCeEEEEEccCCCccceEeecCC
Q psy6213 209 KVWDLSIKPSLEYSINTIASVSRIKWRPQ--------R-------KF-HLASCSLVVDSSVNVWDIRRPYIPLASFTEHK 272 (330)
Q Consensus 209 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--------~-------~~-l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 272 (330)
.|.+..+.+.-....+|..++.+++|+|. | .| ++|+++ .|++|.||.....+..+....-..
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS--qDrSlSVW~T~~~RPl~vi~~lf~ 325 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS--QDRSLSVWNTALPRPLFVIHNLFN 325 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec--CCccEEEEecCCCCchhhhhhhhc
Confidence 89998888778888899999999999982 1 22 677777 899999999976654333334455
Q ss_pred CCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 273 DVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 273 ~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
..|.+++|+|||..|++||.||+|.+...
T Consensus 326 ~SI~DmsWspdG~~LfacS~DGtV~~i~F 354 (942)
T KOG0973|consen 326 KSIVDMSWSPDGFSLFACSLDGTVALIHF 354 (942)
T ss_pred CceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence 78999999999999999999999999863
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=229.66 Aligned_cols=229 Identities=19% Similarity=0.382 Sum_probs=205.1
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
+|.|+.+ +...+++|..|++|+|||..+ ..+...+.+|++.|.|+.|. .+.+++|+.|.+|++||.+++++
T Consensus 199 gVYClQY---DD~kiVSGlrDnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 199 GVYCLQY---DDEKIVSGLRDNTIKIWDKNS---LECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred ceEEEEe---cchhhhcccccCceEEecccc---HHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCch
Confidence 4688887 678899999999999999988 78888999999999999985 56999999999999999999999
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc--ceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK--CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
+.++-.|...|..+.|+.. ++++++.|.++.+||+..+.. +.+.+.+|...|+.+.|+ .+++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~ng---~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSNG---YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEeCC---EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 9999999999999999854 699999999999999987542 345678999999999996 569999999999999
Q ss_pred EeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEe
Q psy6213 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIAS 290 (330)
Q Consensus 211 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 290 (330)
|++.+.+.+....+|...|.|+.+. ++ ++++++ .|.+|++||++.+.+ +..+.+|+.-|.++.| |.+.+++|
T Consensus 345 W~~st~efvRtl~gHkRGIAClQYr--~r-lvVSGS--SDntIRlwdi~~G~c-LRvLeGHEeLvRciRF--d~krIVSG 416 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQYR--DR-LVVSGS--SDNTIRLWDIECGAC-LRVLEGHEELVRCIRF--DNKRIVSG 416 (499)
T ss_pred Eeccceeeehhhhcccccceehhcc--Ce-EEEecC--CCceEEEEeccccHH-HHHHhchHHhhhheee--cCceeeec
Confidence 9999998899999999999988874 44 577777 799999999999987 8899999999999999 67889999
Q ss_pred ecCCeEeeeeccc
Q psy6213 291 SRVSIIPRAKNIK 303 (330)
Q Consensus 291 ~~dg~i~iw~~~~ 303 (330)
+.||+|++|+...
T Consensus 417 aYDGkikvWdl~a 429 (499)
T KOG0281|consen 417 AYDGKIKVWDLQA 429 (499)
T ss_pred cccceEEEEeccc
Confidence 9999999998653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=227.20 Aligned_cols=240 Identities=27% Similarity=0.470 Sum_probs=211.1
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE 131 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 131 (330)
.+|.+++|+| ++++|++++.||.+.+|++.+ ......+..|...+..+.|+| +++++++++.+|.|++||+.+++
T Consensus 10 ~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~---~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~ 84 (289)
T cd00200 10 GGVTCVAFSP-DGKLLATGSGDGTIKVWDLET---GELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGE 84 (289)
T ss_pred CCEEEEEEcC-CCCEEEEeecCcEEEEEEeeC---CCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCccc
Confidence 4579999999 899999999999999999987 556677788999999999998 77899999999999999999888
Q ss_pred eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 132 STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 132 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
....+..+...+.++.|+|++. ++++++.+|.+++||+++ .+....+..|...+.+++|+|++.++++++.|+.+++|
T Consensus 85 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 85 CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVET-GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCC-cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 8888888888999999999976 677777799999999986 56677777899999999999999999988889999999
Q ss_pred eCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEee
Q psy6213 212 DLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 212 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
|++..+.......+...+.++.|+|+++.+++++. ++.+++||++.++. ...+..|...+.+++|+|++.++++++
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecC---CCcEEEEECCCCce-ecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 99987666666677779999999999987666664 99999999988765 666778888999999999999999888
Q ss_pred cCCeEeeeecc
Q psy6213 292 RVSIIPRAKNI 302 (330)
Q Consensus 292 ~dg~i~iw~~~ 302 (330)
.||.|++|+..
T Consensus 239 ~~~~i~i~~~~ 249 (289)
T cd00200 239 EDGTIRVWDLR 249 (289)
T ss_pred CCCcEEEEEcC
Confidence 89999999865
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=236.18 Aligned_cols=275 Identities=14% Similarity=0.195 Sum_probs=210.6
Q ss_pred cccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeecee------eccccccccceeeeeecccCCcEEEEEcCCCc
Q psy6213 4 LSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLR------VGKNINLNFSCNDVAWSCIEENHIATGATNGA 75 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 75 (330)
-..|+....++|+.. +++. +.....|+...+.......-. ......+...|.+++|+|.++++|++|+.|+.
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 345677777888555 7777 888888887655332211100 01123355678999999967789999999999
Q ss_pred EEEEECCCCCC----CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 76 VVVWNLGQISR----SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 76 i~iw~~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
|++||+..... ...+..+.+|...|.+++|+|..+++|++++.|+.|++||+++++.+..+..|...|.+++|+|+
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence 99999976321 23566788999999999999955689999999999999999999999899999999999999999
Q ss_pred CCcEEEEEecCCcEEEEecCCCccceeeeccCCCC-eEEEEEcCCCCEEEEEe----cCCcEEEEeCCCCcccccee--c
Q psy6213 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGP-IFACDWHPEHAWLATAS----RDKTIKVWDLSIKPSLEYSI--N 224 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~--~ 224 (330)
+. +|++++.|+.|++||+++ ++.+..+..|.+. ...+.|.+++..+++++ .|+.|++||+++........ .
T Consensus 180 G~-lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d 257 (493)
T PTZ00421 180 GS-LLCTTSKDKKLNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD 257 (493)
T ss_pred CC-EEEEecCCCEEEEEECCC-CcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC
Confidence 98 699999999999999998 5567778888764 45678999888877765 47899999998765433322 2
Q ss_pred cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEe-ecCCCCeEEEEEecC
Q psy6213 225 TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASF-TEHKDVVSGLAWRGD 283 (330)
Q Consensus 225 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~ 283 (330)
....+....|++++..+++++. .|+.|++||+.++.. +... ..+..++.+++|.|.
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggk--gDg~Iriwdl~~~~~-~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSK--GEGNIRCFELMNERL-TFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEe--CCCeEEEEEeeCCce-EEEeeccCCCCCcceEeccc
Confidence 3345667789999998777664 599999999998865 3333 234567889999884
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=229.40 Aligned_cols=293 Identities=15% Similarity=0.143 Sum_probs=224.4
Q ss_pred CcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
|+..|.++++.|.|..+++| |-.|++||+......... +.. -...-...|.+++|++ +++.|++.+.....+++|
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~-l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-FRQ-LQPCETHQINSLQYSV-TGDQILVVSGSAQAKLLD 242 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchh-hhc-cCcccccccceeeecC-CCCeEEEEecCcceeEEc
Confidence 67789999999999996666 999999999863321111 000 0001112368999999 888888888888999999
Q ss_pred CCCCCCCce---------eEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc-eeeeee-----cCCCCeEE
Q psy6213 81 LGQISRSKQ---------ERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE-STKIFH-----SNTESVRD 145 (330)
Q Consensus 81 ~~~~~~~~~---------~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~-----~~~~~v~~ 145 (330)
-+.....++ ....++|...++|.+|+|.....+++++.||++++||++..+ ....++ +..-+++.
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence 765211111 123468999999999999889999999999999999997654 333333 23347899
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEecCCCc--cceeeeccCCC--CeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc
Q psy6213 146 VEFNPHSPYAFASVSENGTIQQWDVRRPE--KCFYQFTAHSG--PIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY 221 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 221 (330)
++|+|+++ +|++|+.||.|.+|+..... .....-.+|.. .|+++.|+++|++|++-+.|+++++||++..+....
T Consensus 323 C~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 323 CAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred eecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence 99999999 59999999999999976422 12334456776 899999999999999999999999999998866333
Q ss_pred e---eccccceEEEEEcCCCCeEEEEeec---ccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCe
Q psy6213 222 S---INTIASVSRIKWRPQRKFHLASCSL---VVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSI 295 (330)
Q Consensus 222 ~---~~~~~~v~~~~~~~~~~~l~~~~~~---~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 295 (330)
. +....+-+.++|||+.+.++++.+. ...|.+.+||..+... ++.+.-....|..+.|+|.-+.|..++.||.
T Consensus 402 ~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~-v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 402 VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT-VYKIDISTASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee-EEEecCCCceEEEEeecchhhheeeecCCCc
Confidence 2 2345667889999999975555441 2357899999988876 7777767888999999998888999999999
Q ss_pred Eeeee
Q psy6213 296 IPRAK 300 (330)
Q Consensus 296 i~iw~ 300 (330)
++++-
T Consensus 481 ~~vyY 485 (641)
T KOG0772|consen 481 AHVYY 485 (641)
T ss_pred eEEEE
Confidence 99973
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=235.57 Aligned_cols=274 Identities=21% Similarity=0.288 Sum_probs=230.4
Q ss_pred EeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCcee
Q psy6213 12 LKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQE 90 (330)
Q Consensus 12 ~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 90 (330)
....++.+... |..+.++|.++.+....+-..... |.+++|-..+.++||++++.+.+++|++.+ ..+
T Consensus 290 ~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE-------I~Dm~~lG~e~~~laVATNs~~lr~y~~~~---~~c- 358 (775)
T KOG0319|consen 290 IESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE-------ILDMKFLGPEESHLAVATNSPELRLYTLPT---SYC- 358 (775)
T ss_pred ccccCceEEEEccceEEEEEccccEEehhhcCCchh-------heeeeecCCccceEEEEeCCCceEEEecCC---Cce-
Confidence 33445554444 999999999887766555444333 578887544889999999999999998877 333
Q ss_pred EEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc----eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEE
Q psy6213 91 RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE----STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQ 166 (330)
Q Consensus 91 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~ 166 (330)
..+.+|+..|.++.... ++.+|++|+.|+++++|.++++. ++....+|...|.+++++..+..+|++++.|++++
T Consensus 359 ~ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred EEEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 37899999999999442 67899999999999999885433 35556789999999999998888999999999999
Q ss_pred EEecCCCc--cce------eeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCC
Q psy6213 167 QWDVRRPE--KCF------YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQR 238 (330)
Q Consensus 167 i~d~~~~~--~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 238 (330)
+|++.... ... .....|...|++++++|+.++++||+.|++.+||+++.........+|...+.++.|+|..
T Consensus 438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d 517 (775)
T KOG0319|consen 438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKND 517 (775)
T ss_pred EecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecccc
Confidence 99998621 111 1334699999999999999999999999999999999877788888999999999999999
Q ss_pred CeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 239 KFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
+. +++++ .|++|+||.+.+..+ +.++.+|...|..+.|-.++..|++++.||.|++|..
T Consensus 518 q~-laT~S--gD~TvKIW~is~fSC-lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 518 QL-LATCS--GDKTVKIWSISTFSC-LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred ce-eEecc--CCceEEEEEecccee-eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 85 77777 699999999999987 9999999999999999999999999999999999974
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=230.89 Aligned_cols=244 Identities=19% Similarity=0.373 Sum_probs=210.5
Q ss_pred ccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee
Q psy6213 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 49 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~ 128 (330)
++...|+++.|.|..+.+|++++.|+.|+||++.. ...+++++.+|..+|.+++|++ ++..+++++.|+.|++||++
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtE 288 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--DRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTE 288 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEec--Ccceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccc
Confidence 34455799999998899999999999999999876 3789999999999999999997 99999999999999999999
Q ss_pred cCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcE
Q psy6213 129 CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTI 208 (330)
Q Consensus 129 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 208 (330)
+|+++..+. ....++|+.|+|++.++|++|+.|+.|+.||+++ ++.++.+..|-+.|..+.|-++|+.+++.+.|+.+
T Consensus 289 TG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ 366 (503)
T KOG0282|consen 289 TGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSV 366 (503)
T ss_pred cceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-hHHHHHHHhhhhheeeeEEccCCceEeeeccCccE
Confidence 999999998 4567899999999988999999999999999998 67888899999999999999999999999999999
Q ss_pred EEEeCCCCcccccee-ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc--cceEeecCC--CCeEEEEEecC
Q psy6213 209 KVWDLSIKPSLEYSI-NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI--PLASFTEHK--DVVSGLAWRGD 283 (330)
Q Consensus 209 ~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~--~~~~~~~~~--~~v~~~~~~~~ 283 (330)
+||+.+.+-.+.... .......++..+|++++ +++-+ .|+.|.+|.+..... ....+.+|. +--..+.||||
T Consensus 367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~-~~aQs--~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW-FAAQS--MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred EEEEcCCCccchhhcchhhccCcceecCCCCCe-ehhhc--cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 999998874433332 23456778999999998 55555 699999999754322 134556665 34567899999
Q ss_pred CCEEEEeecCCeEeeee
Q psy6213 284 PQLFIASSRVSIIPRAK 300 (330)
Q Consensus 284 ~~~l~s~~~dg~i~iw~ 300 (330)
|.+|++|+.||.+.+|+
T Consensus 444 G~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWD 460 (503)
T ss_pred CCeEEeecCCccEEEee
Confidence 99999999999999996
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=226.98 Aligned_cols=277 Identities=17% Similarity=0.284 Sum_probs=225.3
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcc--eeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTE--FVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVV 77 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 77 (330)
+|.+.+..+.|-++... ++.| |..|++|+...++ +...+... ..++++++|.+ ++..+++++.|+.++
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs-------~g~it~~d~d~-~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGS-------LGNITSIDFDS-DNKHVIAASNDKNLR 244 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhcc-------CCCcceeeecC-CCceEEeecCCCcee
Confidence 58999999999999444 6667 9999999998766 22222222 23369999999 899999999999999
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
+|++.. .+...++.+|++.|+++.|.. ....+++|+.|.+|+.||+....+.+++. ..+.+..+..++. .++
T Consensus 245 ~Wnvd~---~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~~---~~~ 316 (459)
T KOG0288|consen 245 LWNVDS---LRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSIS---DVI 316 (459)
T ss_pred eeeccc---hhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheecccc-ccccccceEecce---eee
Confidence 999998 788889999999999999985 55559999999999999999888877765 3455666666622 588
Q ss_pred EEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec----cccceEEEE
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN----TIASVSRIK 233 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~ 233 (330)
+|-.|++|++||.+. ..+......+ +.|+++..++++..+.+++.|..+.+.|+++.+....... .....+.+.
T Consensus 317 SgH~DkkvRfwD~Rs-~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRS-ADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred ecccccceEEEeccC-CceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 999999999999998 5566666655 5899999999999999999999999999998854332221 234589999
Q ss_pred EcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCC--CeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 234 WRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKD--VVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
|||++.|+++++ .||.|+||++.+++. ...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 395 fSpd~~YvaAGS---~dgsv~iW~v~tgKl-E~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 395 FSPDGSYVAAGS---ADGSVYIWSVFTGKL-EKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ECCCCceeeecc---CCCcEEEEEccCceE-EEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999855554 599999999999986 444443333 699999999999999999999999994
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=232.13 Aligned_cols=278 Identities=18% Similarity=0.288 Sum_probs=235.7
Q ss_pred ccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 5 SPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
.+|+|+.-+|+..+++.| ||.|+||+..++.....++.|... |+++.|.. .|.+|++|+.|+.|.+||+-
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~A-------Vt~l~fd~-~G~rlaSGskDt~IIvwDlV 137 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAA-------VTTLKFDK-IGTRLASGSKDTDIIVWDLV 137 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccc-------eEEEEEcc-cCceEeecCCCccEEEEEec
Confidence 478999988888888889 999999999988777777767654 59999998 99999999999999999997
Q ss_pred CCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecC
Q psy6213 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN 162 (330)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 162 (330)
. ..-...+.+|+..|+..-|.. +.+.+++.+.|+.|++||+.+..+..+.-.|...+..+++.+ + ++++++.|
T Consensus 138 ~---E~Gl~rL~GHkd~iT~~~F~~-~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~-~lvt~~~d 210 (888)
T KOG0306|consen 138 G---EEGLFRLRGHKDSITQALFLN-GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--K-LLVTAGTD 210 (888)
T ss_pred c---ceeeEEeecchHHHhHHhccC-CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--c-eEEEEecC
Confidence 7 566778899999999999985 789999999999999999999999988888999999999988 3 68888888
Q ss_pred CcEEEEecCCCc--------------------------------------------------------------------
Q psy6213 163 GTIQQWDVRRPE-------------------------------------------------------------------- 174 (330)
Q Consensus 163 g~i~i~d~~~~~-------------------------------------------------------------------- 174 (330)
+.+++|++..+.
T Consensus 211 se~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~ 290 (888)
T KOG0306|consen 211 SELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRA 290 (888)
T ss_pred CceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHh
Confidence 899999871100
Q ss_pred --------------------------------------------------------------------------------
Q psy6213 175 -------------------------------------------------------------------------------- 174 (330)
Q Consensus 175 -------------------------------------------------------------------------------- 174 (330)
T Consensus 291 Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~ 370 (888)
T KOG0306|consen 291 KKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIG 370 (888)
T ss_pred hhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeec
Confidence
Q ss_pred --------------------------------------------------------------------------cceeee
Q psy6213 175 --------------------------------------------------------------------------KCFYQF 180 (330)
Q Consensus 175 --------------------------------------------------------------------------~~~~~~ 180 (330)
..+.+.
T Consensus 371 GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti 450 (888)
T KOG0306|consen 371 GHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETI 450 (888)
T ss_pred cchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhh
Confidence 112234
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc------c------cceeccccceEEEEEcCCCCeEEEEeecc
Q psy6213 181 TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS------L------EYSINTIASVSRIKWRPQRKFHLASCSLV 248 (330)
Q Consensus 181 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 248 (330)
++|.+.|.+++.+||++.+++|+.|.+|++||..-... . .........|.++.+||||++|+++-
T Consensus 451 ~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL--- 527 (888)
T KOG0306|consen 451 RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL--- 527 (888)
T ss_pred hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe---
Confidence 57899999999999999999999999999999742211 1 12233467899999999999866655
Q ss_pred cCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 249 VDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 249 ~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.|+++++|-+.+.+. ...+-+|.-||.+|..+||+++++|||.|..|++|-.
T Consensus 528 LdnTVkVyflDtlKF-flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKF-FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred ccCeEEEEEecceee-eeeecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence 599999999999876 6778899999999999999999999999999999963
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=213.71 Aligned_cols=286 Identities=16% Similarity=0.261 Sum_probs=245.9
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|+.++....... -+++ |.+.+||.++++.++..+..|.+. |++++|++ .+.++++++.|++-.||
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS-------VNsikfh~-s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGS-------VNSIKFHN-SGLLLLTASGDETAHIW 217 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccc-------eeeEEecc-ccceEEEccCCcchHHH
Confidence 58899999998776666 3444 999999999999999988877665 59999999 99999999999999999
Q ss_pred EC------CCC-------------------------------CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcE
Q psy6213 80 NL------GQI-------------------------------SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTM 122 (330)
Q Consensus 80 ~~------~~~-------------------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i 122 (330)
.. ..+ .-..++..+.+|.+.|.+..|.. +++.+++++.|.+.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTA 296 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccc
Confidence 72 110 00123456778999999999996 99999999999999
Q ss_pred EEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEE
Q psy6213 123 RLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATA 202 (330)
Q Consensus 123 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 202 (330)
.+||+++++.+..+.+|....+.++-+|..+ ++++++.|.+.++||++..-..+..|++|...|++..|..+. .+++|
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQr-LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQR-LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcce-EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 9999999999999999999999999999988 899999999999999997667788999999999999998765 58999
Q ss_pred ecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc---cceEeecCCCCeEEEE
Q psy6213 203 SRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI---PLASFTEHKDVVSGLA 279 (330)
Q Consensus 203 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~ 279 (330)
+.|.+|++||+++.+.....+....+++.++.+..++. ++.-- ++..|++||++.... |...-++|...|.+.+
T Consensus 375 SDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~i-IAiPh--DNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPI-IAIPH--DNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeeccccCcceeeecCCccceeEeecCCce-EEecc--CCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 99999999999999888888889999999999998885 66655 689999999987653 3445678999999999
Q ss_pred EecCC--CEEEEeecCCeEeeeec
Q psy6213 280 WRGDP--QLFIASSRVSIIPRAKN 301 (330)
Q Consensus 280 ~~~~~--~~l~s~~~dg~i~iw~~ 301 (330)
|..+. .-|++|+.|..+.=|+.
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred ccccCcccccccccccceeeeeEe
Confidence 98643 45889999999999974
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=231.69 Aligned_cols=210 Identities=19% Similarity=0.301 Sum_probs=174.6
Q ss_pred EecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC-------ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 92 VFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-------ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 92 ~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
.+.+|.+.|.+++|+|.++++|++|+.|++|++||+.++ +++..+.+|...|.+++|+|++..+|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 467899999999999867889999999999999999764 3466788899999999999987668999999999
Q ss_pred EEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecccc-ceEEEEEcCCCCeEEE
Q psy6213 165 IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIA-SVSRIKWRPQRKFHLA 243 (330)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~ 243 (330)
|++||+++ ......+..|...|.+++|+|+|.+|++++.|+.|++||+++++.......|.. ....+.|.+++..+++
T Consensus 150 VrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 150 VNVWDVER-GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEECCC-CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 99999998 566778888999999999999999999999999999999998866555555544 3457889999887666
Q ss_pred Eee-cccCCeEEEEEccCCCccceEeecCC-CCeEEEEEecCCCEEEEee-cCCeEeeeecc
Q psy6213 244 SCS-LVVDSSVNVWDIRRPYIPLASFTEHK-DVVSGLAWRGDPQLFIASS-RVSIIPRAKNI 302 (330)
Q Consensus 244 ~~~-~~~~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~-~dg~i~iw~~~ 302 (330)
++. ...|+.|++||+++...++.....+. ..+....|++++++|++++ .|+.|++|+..
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 552 12479999999998766565554333 4566678899999999988 49999999865
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=241.38 Aligned_cols=239 Identities=21% Similarity=0.380 Sum_probs=215.5
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
+..++|+| ....++++-..|.|++||.+- ...+..+..|.++|..+.|+| .+.++++|+.|-.|++|+.++.+++
T Consensus 12 vKglsFHP-~rPwILtslHsG~IQlWDYRM---~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 12 VKGLSFHP-KRPWILTSLHSGVIQLWDYRM---GTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCL 86 (1202)
T ss_pred ccceecCC-CCCEEEEeecCceeeeehhhh---hhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceeh
Confidence 58899999 999999999999999999988 788999999999999999999 8999999999999999999999999
Q ss_pred eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeC
Q psy6213 134 KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 134 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 213 (330)
.++.+|-+.|+.+.|++.-++ ++++++|.+|+||+..+ .+++..+.+|...|.|..|+|...++++++-|.+||+||+
T Consensus 87 ftL~GHlDYVRt~~FHheyPW-IlSASDDQTIrIWNwqs-r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPW-ILSASDDQTIRIWNWQS-RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred hhhccccceeEEeeccCCCce-EEEccCCCeEEEEeccC-CceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 999999999999999999995 99999999999999998 8899999999999999999999999999999999999998
Q ss_pred CCCcc-----------------------------ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc-
Q psy6213 214 SIKPS-----------------------------LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI- 263 (330)
Q Consensus 214 ~~~~~-----------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~- 263 (330)
...+. .....+|+..|+-++|+|.-+. +++++ +|..|++|.++..+.
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl-iVSG~--DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL-IVSGA--DDRQVKLWRMNETKAW 241 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce-EEecC--CcceeeEEEeccccce
Confidence 64321 0112346778999999999985 67776 799999999975442
Q ss_pred cceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 264 PLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 264 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+-+..+|...|.++-|+|...++++.|+|++|++|+..
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence 266778999999999999999999999999999999854
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=215.95 Aligned_cols=279 Identities=18% Similarity=0.340 Sum_probs=235.9
Q ss_pred ccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 5 SPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 5 ~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
..+.++...|.... ++.| |..+.++|...++.+..+..|... |+.+.++| +...+++++.|..|++|...
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kk-------i~~v~~~~-~~~~v~~aSad~~i~vws~~ 291 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKK-------ITSVKFHK-DLDTVITASADEIIRVWSVP 291 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceE-------EEEEEecc-chhheeecCCcceEEeeccc
Confidence 45788888887555 6666 999999999999998888877554 58999999 99999999999999999987
Q ss_pred CCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec--CCCCeEEEEEcCCCCcEEEEEe
Q psy6213 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS--NTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
. .........|..+|+.+..+| .+.||++++.|++..+.|++++..+..... ..-.+++.+|+|||- +|.+|.
T Consensus 292 ~---~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt 366 (506)
T KOG0289|consen 292 L---SSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGT 366 (506)
T ss_pred c---ccCccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccC
Confidence 7 456666788999999999999 999999999999999999999988776654 234589999999998 899999
Q ss_pred cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc-eeccccceEEEEEcCCCC
Q psy6213 161 ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY-SINTIASVSRIKWRPQRK 239 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 239 (330)
.||.+++||+.. +.....|.+|.++|..++|+.+|-+|++++.|+.|++||++..+.... ......++.++.|.+.|.
T Consensus 367 ~d~~vkiwdlks-~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 367 PDGVVKIWDLKS-QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred CCceEEEEEcCC-ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence 999999999998 557889999999999999999999999999999999999998754333 233345799999999999
Q ss_pred eEEEEeecccCCeEEEEEccCCC-ccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPY-IPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+|.++++ +=.|++++-.+.. ..+..+..|.+..+++.|....++++++|.|..++++.
T Consensus 446 ~L~~~g~---~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 446 YLGIAGS---DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred eEEeecc---eeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 9777654 7677777643322 23666778888999999999999999999999988874
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=224.10 Aligned_cols=240 Identities=20% Similarity=0.311 Sum_probs=212.9
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
..+|.+++|+|....-+|+.+. -.+.+|+..+ ....+.+...+..+.++.|.. ||.++++|...|.|++||+++.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~---~~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT---RSVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecch---hhhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEeccccH
Confidence 3457999999977777777765 4699999887 556666777788999999996 9999999999999999998877
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC-CCEEEEEecCCcEE
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLATASRDKTIK 209 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~ 209 (330)
..++.+..|+.++....|+|+++.++++|++|+.+++||+.+.. ....+.+|++.|.+.+|+|. +.++++|+.||.|+
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 78889999999999999999999899999999999999999844 46688899999999999995 55899999999999
Q ss_pred EEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEE
Q psy6213 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIA 289 (330)
Q Consensus 210 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 289 (330)
+||++..........|..+|..+.+-|.|.. +++++ .+.+++||+.++.+.+.....|...|+|+.+..++..|++
T Consensus 180 l~DtR~~~~~v~elnhg~pVe~vl~lpsgs~-iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS 255 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELNHGCPVESVLALPSGSL-IASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS 255 (487)
T ss_pred EEEeccCCceeEEecCCCceeeEEEcCCCCE-EEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee
Confidence 9999998777788899999999999999985 77776 8999999999777767667679999999999999999999
Q ss_pred eecCCeEeeee
Q psy6213 290 SSRVSIIPRAK 300 (330)
Q Consensus 290 ~~~dg~i~iw~ 300 (330)
++-|+.+++|+
T Consensus 256 ~sLD~~VKVfd 266 (487)
T KOG0310|consen 256 GSLDRHVKVFD 266 (487)
T ss_pred cccccceEEEE
Confidence 99999999997
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=229.91 Aligned_cols=249 Identities=11% Similarity=0.133 Sum_probs=182.9
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC-----CceeEEecccc
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR-----SKQERVFNDHK 97 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~ 97 (330)
++.+++|+.........+..| ...|.+++|+|.++++|++|+.||.|++||+.+... ......+.+|.
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH-------~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGH-------TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred eeEEEeeecCCCceEEEEcCC-------CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 778888887665443333333 334799999995588999999999999999975321 12344678899
Q ss_pred cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccce
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF 177 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 177 (330)
..|.+++|+|....++++++.|+.|++||+++++....+. +...|.+++|+|+|. +|++++.|+.|++||+++ +..+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rs-g~~i 202 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRK-QEIA 202 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCC-CcEE
Confidence 9999999999444556899999999999999988777776 567899999999998 688899999999999998 5667
Q ss_pred eeeccCCCCeEEE-----EEcCCCCEEEEEecCC----cEEEEeCCCCccccceecccc---ceEEEEEcCCCCeEEEEe
Q psy6213 178 YQFTAHSGPIFAC-----DWHPEHAWLATASRDK----TIKVWDLSIKPSLEYSINTIA---SVSRIKWRPQRKFHLASC 245 (330)
Q Consensus 178 ~~~~~~~~~i~~~-----~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~ 245 (330)
..+.+|.+.+... .|++++.+|++++.|+ +|++||++............. .+......+++.+ ++++
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l-~lsG 281 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLI-YLIG 281 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCE-EEEE
Confidence 7888898765433 3458889999988774 799999996544333333222 2222333444665 5555
Q ss_pred ecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCC
Q psy6213 246 SLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDP 284 (330)
Q Consensus 246 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 284 (330)
+ .|+.|++|++..+.........+..++.+++|.|..
T Consensus 282 k--GD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 282 K--GDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred E--CCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 5 599999999987643111112355788999999953
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=231.99 Aligned_cols=272 Identities=24% Similarity=0.358 Sum_probs=233.7
Q ss_pred CcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeee-eceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVET-HNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
|...+.+..|. ++..++.. +++|++|+..++..... +..|.+. |.++++.. .+++|++|+.|.++++||
T Consensus 207 ~~~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~-------V~~l~~~~-~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGG-------VWGLAFPS-GGDKLVSGSTDKTERVWD 277 (537)
T ss_pred Ccchhhhheee-cCeEEecCCCceeEEeecccceEEEeeccCCCCC-------ceeEEEec-CCCEEEEEecCCcEEeEe
Confidence 45667788888 55555555 99999999999887766 6666554 58889886 799999999999999999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
..+ +.+...+.+|...+.++... +..+++|+.|.+|++|+++++..+..+.+|.++|+++..+ ++ ++++|+
T Consensus 278 ~~s---g~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs 348 (537)
T KOG0274|consen 278 CST---GECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP-LLVSGS 348 (537)
T ss_pred cCC---CcEEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC-EEEEEe
Confidence 888 89999999999999999864 5778889999999999999999999999999999999998 44 799999
Q ss_pred cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC-ccccceeccccceEEEEEcCCCC
Q psy6213 161 ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK-PSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
.|++|++||..+ .+++..+.+|...|.++.+.+. ..+++|+.|+.|++||+++. ++......|..-+..+.+.. +
T Consensus 349 ~d~~v~VW~~~~-~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~--~ 424 (537)
T KOG0274|consen 349 YDGTVKVWDPRT-GKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD--N 424 (537)
T ss_pred cCceEEEEEhhh-ceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccccc--c
Confidence 999999999997 8899999999999999988765 89999999999999999999 77777778888886666544 4
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeec-CCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTE-HKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
++.+++ .|+.|++||...++. +..+.+ |...|..+++. ...+++++.||.+++|+..
T Consensus 425 -~Lvs~~--aD~~Ik~WD~~~~~~-~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 425 -FLVSSS--ADGTIKLWDAEEGEC-LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred -eeEecc--ccccEEEeecccCce-eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 466666 699999999999987 778877 67889888875 4678899999999999643
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=218.51 Aligned_cols=277 Identities=15% Similarity=0.197 Sum_probs=226.5
Q ss_pred CCcccceEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
.|.+.|.|++=+|.... +++| ||.|+|||+...++...+..|.+.+ ..+++.. ..+++++.|.+|+.
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V-------~Gi~v~~---~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLV-------RGICVTQ---TSFFTVGDDKTVKQ 133 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCce-------eeEEecc---cceEEecCCcceee
Confidence 58999999999998755 6666 9999999999988888888877654 6777753 77888899999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
|.++. .+..++. .+..+..+.-+. .++.++++|. .|.|||..-..++..+......|.++.|+|....+|++
T Consensus 134 wk~~~----~p~~til-g~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 134 WKIDG----PPLHTIL-GKSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILAS 205 (433)
T ss_pred eeccC----Ccceeee-cccccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheee
Confidence 99875 3444443 346677777765 6788999986 59999999889999999888999999999999889999
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc-ccceeccccceEEEEEcCC
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS-LEYSINTIASVSRIKWRPQ 237 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~ 237 (330)
+..|+.|.+||+++ ..+++... ....-+.|+|+|++-.|+++..|..++.||++.... +.....|.+.|..+.|+|.
T Consensus 206 ~~sDrsIvLyD~R~-~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQ-ASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred eccCCceEEEeccc-CCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC
Confidence 99999999999998 45554443 234567899999888899999999999999998755 4455678899999999999
Q ss_pred CCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 238 RKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
|+. +++++ .|.+|+||..+.+...-.....--+.|.++.|+.|.+++++||.|+.|++|+.
T Consensus 284 G~E-fvsgs--yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 284 GQE-FVSGS--YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred cch-hcccc--ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 998 66666 79999999998775311111222357999999999999999999999999974
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=191.69 Aligned_cols=291 Identities=20% Similarity=0.273 Sum_probs=228.3
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcce--------eeeeceeeccccccccceeeeeecccCCcEEEEEcCC
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEF--------VETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN 73 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 73 (330)
+..|.+++|+|.|.+.+.| ..+++|-....-.. .+...........+..+|.|.+|+| .++++++|+.|
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatgsnd 110 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATGSND 110 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEecCCC
Confidence 4679999999999995555 88888875432110 0010111122334556789999999 99999999999
Q ss_pred CcEEEEECCCC--CCCceeEEecccccceeEEEEEe---cCCCEEEEEe-cCCcEEEEEeecCceeeeeecCCCCeEEEE
Q psy6213 74 GAVVVWNLGQI--SRSKQERVFNDHKRTVNKVSFHY---VESNWLISGS-QDGTMRLFDIRCQESTKIFHSNTESVRDVE 147 (330)
Q Consensus 74 g~i~iw~~~~~--~~~~~~~~~~~~~~~i~~i~~~~---~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 147 (330)
..|++.-++.. +.......+.-|.+.|..++|.. ..+.+|++++ .|..|++-|...++..+.+.+|.+.|.++-
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 99999766542 12233456778999999999963 2345677665 477888889999999999999999998773
Q ss_pred EcCCCCcEEEEEecCCcEEEEecCCCccceeeecc--C-----CCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc
Q psy6213 148 FNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA--H-----SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE 220 (330)
Q Consensus 148 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 220 (330)
+-++- ++++|+.|.+|++||++- ..++.++.. | ...|.+++..|.|++|++|-.|....+||++.++.+.
T Consensus 191 -swn~~-m~~sgsqdktirfwdlrv-~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 191 -SWNGA-MFASGSQDKTIRFWDLRV-NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred -EecCc-EEEccCCCceEEEEeeec-cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 22344 899999999999999997 444544432 2 2578999999999999999999999999999998899
Q ss_pred ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC---CccceEeecCCCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 221 YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP---YIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 221 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
...+|...|.++.|+|...| +.+++ .|..|++-|+... +.++.....|...+..+.|+|..-.+++.+.|.++.
T Consensus 268 ~f~phsadir~vrfsp~a~y-llt~s--yd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~t 344 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHY-LLTCS--YDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTAT 344 (350)
T ss_pred eeCCCccceeEEEeCCCceE-EEEec--ccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEE
Confidence 99999999999999999998 55555 6999999999743 345667788999999999999998999999999999
Q ss_pred eeec
Q psy6213 298 RAKN 301 (330)
Q Consensus 298 iw~~ 301 (330)
+|..
T Consensus 345 lwa~ 348 (350)
T KOG0641|consen 345 LWAL 348 (350)
T ss_pred Eecc
Confidence 9953
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=215.06 Aligned_cols=293 Identities=17% Similarity=0.202 Sum_probs=236.6
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCccee-eeece------ee---ccc-cccccceeeeeecccCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFV-ETHNL------RV---GKN-INLNFSCNDVAWSCIEENHIA 68 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~-~~~~~------~~---~~~-~~~~~~v~~~~~~~~~~~~l~ 68 (330)
-|.-+|.||+++||+++ +.++ +++|.=|++.+++.. ....- +. ... ..+...+.+++.+| ++.+||
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dgkyla 218 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DGKYLA 218 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CCcEEE
Confidence 38899999999999999 8888 999999999987643 11111 11 111 14445579999999 999999
Q ss_pred EEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEE
Q psy6213 69 TGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEF 148 (330)
Q Consensus 69 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 148 (330)
+|+.|..|.||+..+ .+.++.+.+|.+.|.+++|-. +.+.+++++.|+.|++|+++....+.++.+|.+.|..+..
T Consensus 219 tgg~d~~v~Iw~~~t---~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDT---LEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred ecCCCceEEEecCcc---cchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 999999999999999 788888999999999999996 8888999999999999999999999999999999999988
Q ss_pred cCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee-----
Q psy6213 149 NPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI----- 223 (330)
Q Consensus 149 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----- 223 (330)
...++ ++.+|+.|+++++|++. ......+.++.+.+-|++|-. ...+++|+.+|.|.+|++...+.+....
T Consensus 295 L~reR-~vtVGgrDrT~rlwKi~--eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 295 LSRER-CVTVGGRDRTVRLWKIP--EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred hcccc-eEEeccccceeEEEecc--ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 88777 67777899999999995 445567788899999999984 4679999999999999998775532221
Q ss_pred -------ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc---cceEeecCCCCeEEEEEecCCCEEE-Eeec
Q psy6213 224 -------NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI---PLASFTEHKDVVSGLAWRGDPQLFI-ASSR 292 (330)
Q Consensus 224 -------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~ 292 (330)
.....|++++..|... |+++++ .+|.|++|-+..+.. ++..+. -.+-|++++|+++|+.|+ ..+.
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sd-L~asGS--~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSD-LLASGS--WSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred cCCccccccccceeeeEecccCc-eEEecC--CCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccc
Confidence 1123799999999988 588888 799999999998843 233343 457899999999999554 4566
Q ss_pred CCeEeeeeccceeee
Q psy6213 293 VSIIPRAKNIKIFIA 307 (330)
Q Consensus 293 dg~i~iw~~~~~~~~ 307 (330)
...+--|...+....
T Consensus 447 EhRlGRW~~~k~~~~ 461 (479)
T KOG0299|consen 447 EHRLGRWWCLKSGKN 461 (479)
T ss_pred ccccceeeEeecccc
Confidence 777777876554433
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=205.75 Aligned_cols=293 Identities=14% Similarity=0.200 Sum_probs=217.1
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|++++|+.||++ +++. |+.|++|++.+-....--.+...- ... ..+.+.|+|+....+++.-...++++|
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~d-hpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYD-HPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCC-CceEEEECCCcceEEEEEccCCEEEEE
Confidence 58999999999999999 5555 999999999873322111111111 111 238999999555566666667789999
Q ss_pred ECCCCCCCceeE---------EecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcC
Q psy6213 80 NLGQISRSKQER---------VFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150 (330)
Q Consensus 80 ~~~~~~~~~~~~---------~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 150 (330)
.+.....+.... .-..|.-.+..+-.. .++.+|++++.|..|.+|+++ |+.+..+......-+..+.+|
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 876532222111 112355666666666 478999999999999999999 888988887777788899999
Q ss_pred CCCcEEEEEecCCcEEEEecCCC-------ccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc-----
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRP-------EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS----- 218 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----- 218 (330)
+|+ ++++++..-.|++|.+--. -..+..+++|...|..++|+|+...+++.+.||++++||..-.-.
T Consensus 239 ~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 239 DGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 999 5788877888999986321 123457889999999999999999999999999999999753311
Q ss_pred -cc-----ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeec
Q psy6213 219 -LE-----YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 219 -~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
+. ......+....++++|+|+. ++.+. ...+++|..++++..-.....|...|.+++|+++|+++++++
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~-lA~s~---gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG- 392 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDS-LAVSF---GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG- 392 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcE-EEeec---CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-
Confidence 11 11112344558999999996 55554 889999999988764445567999999999999999999987
Q ss_pred CCeEeeeecccee
Q psy6213 293 VSIIPRAKNIKIF 305 (330)
Q Consensus 293 dg~i~iw~~~~~~ 305 (330)
|..+++..+...+
T Consensus 393 dr~vrv~~ntpg~ 405 (420)
T KOG2096|consen 393 DRYVRVIRNTPGW 405 (420)
T ss_pred ceeeeeecCCCch
Confidence 6778887654433
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=208.62 Aligned_cols=239 Identities=16% Similarity=0.260 Sum_probs=197.7
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|+++.|+.||.++++| +|.|+||+..++.....+...... +.=+.|+| .+..|++|+.||.+.+|
T Consensus 104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~d-------ieWl~WHp-~a~illAG~~DGsvWmw 175 (399)
T KOG0296|consen 104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVED-------IEWLKWHP-RAHILLAGSTDGSVWMW 175 (399)
T ss_pred CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCc-------eEEEEecc-cccEEEeecCCCcEEEE
Confidence 599999999999999997777 999999999998766555422211 36688999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC--------------------
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN-------------------- 139 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------- 139 (330)
.+.+ ....+.+.+|..++++=.|.| +|+.++++..||+|++||+.+++++..+...
T Consensus 176 ~ip~---~~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 176 QIPS---QALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG 251 (399)
T ss_pred ECCC---cceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec
Confidence 9987 578888999999999999999 8999999999999999999998876665410
Q ss_pred -------------------------------CCCeEEE---EEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCC
Q psy6213 140 -------------------------------TESVRDV---EFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSG 185 (330)
Q Consensus 140 -------------------------------~~~v~~~---~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 185 (330)
...+.|+ .++..-+ +.++|+-||+|.|||+.. .... ..-.|..
T Consensus 252 ~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~-~~~R-~~c~he~ 328 (399)
T KOG0296|consen 252 NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAA-STLR-HICEHED 328 (399)
T ss_pred cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc-hhhcccccceEEEEeccc-chhh-eeccCCC
Confidence 0011111 2222223 688899999999999986 4444 4445889
Q ss_pred CeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 186 PIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 186 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
+|..+.|.+ ..+|++++.+|.|+.||.++++......+|...|.+++++|+.+. +++++ .|+..++|+..
T Consensus 329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~-vvT~s--~D~~a~VF~v~ 398 (399)
T KOG0296|consen 329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRL-VVTVS--DDNTALVFEVP 398 (399)
T ss_pred ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcE-EEEec--CCCeEEEEecC
Confidence 999999998 789999999999999999999889999999999999999999996 55555 69999999864
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=199.53 Aligned_cols=291 Identities=16% Similarity=0.293 Sum_probs=229.1
Q ss_pred CCcccceEEEEee-CCCe-eecC-CCeEEEEEcCCcce------eee--eceeeccccccccceeeeeecccCCcEEEEE
Q psy6213 2 AYLSPVHKHGLKA-DNGL-AQPS-RNVFKIFLIKDTEF------VET--HNLRVGKNINLNFSCNDVAWSCIEENHIATG 70 (330)
Q Consensus 2 ~H~~~v~~~~~s~-~~~~-~~~g-d~~i~iw~~~~~~~------~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 70 (330)
.|.+.|+++...+ .|+| ++.| ||.|.+||++.... ... ..........+.+.|.++.|-|.+...+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4889999999988 5777 5556 99999999987431 111 1122334456778899999999899999999
Q ss_pred cCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecC--CCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEE
Q psy6213 71 ATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE--SNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEF 148 (330)
Q Consensus 71 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 148 (330)
+.|.++++||..+ .+....++ .++.|.+-+++|.. ..++|+|..+-+|++-|+.+|...+++.+|.+.|.++.|
T Consensus 121 SFDhtlKVWDtnT---lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 121 SFDHTLKVWDTNT---LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred cccceEEEeeccc---ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 9999999999988 55555554 56788888888733 357888888999999999999999999999999999999
Q ss_pred cCCCCcEEEEEecCCcEEEEecCCCccceee--------------eccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCC
Q psy6213 149 NPHSPYAFASVSENGTIQQWDVRRPEKCFYQ--------------FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214 (330)
Q Consensus 149 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~--------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 214 (330)
+|..+++|++|+.||.|++||++....+... -..|.+.++.++|..++.++++++.|..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 9999999999999999999999875333332 23577889999999999999999999999999998
Q ss_pred CCccccceec---c---ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEE
Q psy6213 215 IKPSLEYSIN---T---IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFI 288 (330)
Q Consensus 215 ~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 288 (330)
+++....... + ...-..+. +-+.. +++..- .++.+.++++-.+.. +..+..|-..|.+.++.|+-+...
T Consensus 277 ~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~-vfv~~p--~~~~lall~~~sgs~-ir~l~~h~k~i~c~~~~~~fq~~~ 351 (397)
T KOG4283|consen 277 SGRNTLREFGPIIHNQTTSFAVHIQ-SMDSD-VFVLFP--NDGSLALLNLLEGSF-VRRLSTHLKRINCAAYRPDFEQCF 351 (397)
T ss_pred cCcccccccccccccccccceEEEe-ecccc-eEEEEe--cCCeEEEEEccCceE-EEeeecccceeeEEeecCchhhhh
Confidence 8754222211 1 11111122 22333 233333 479999999998887 888999989999999999999999
Q ss_pred EeecCCeEeeeec
Q psy6213 289 ASSRVSIIPRAKN 301 (330)
Q Consensus 289 s~~~dg~i~iw~~ 301 (330)
++..|+.+..|.+
T Consensus 352 tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 352 TGDMNGNIYMWSP 364 (397)
T ss_pred ccccCCccccccc
Confidence 9999999999976
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=226.77 Aligned_cols=225 Identities=14% Similarity=0.203 Sum_probs=178.5
Q ss_pred EcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc--------eeeeeecCCC
Q psy6213 70 GATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE--------STKIFHSNTE 141 (330)
Q Consensus 70 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~ 141 (330)
|+.++.+++|+... ...+..+.+|.+.|.+++|+|.++++|++|+.|+.|++||+.++. ++..+.+|..
T Consensus 50 GG~~gvI~L~~~~r---~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMR---KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCC---CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 55678899999876 567778899999999999999558999999999999999997542 3346778999
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc
Q psy6213 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY 221 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 221 (330)
.|.+++|+|++.+++++++.|+.|++||++++ .....+. |...|.+++|+|+|.+|++++.|+.|++||+++++....
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENE-KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 99999999999877789999999999999984 4445554 567899999999999999999999999999999876665
Q ss_pred eeccccceE-----EEEEcCCCCeEEEEeecccC----CeEEEEEccCCCccceEeec--CCCCeEEEEEecCCCEEEEe
Q psy6213 222 SINTIASVS-----RIKWRPQRKFHLASCSLVVD----SSVNVWDIRRPYIPLASFTE--HKDVVSGLAWRGDPQLFIAS 290 (330)
Q Consensus 222 ~~~~~~~v~-----~~~~~~~~~~l~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~ 290 (330)
...|.+.+. ...|++++.++++++. + +.|++||+++...++..... +.+.+......+++.++++|
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~---d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGF---SKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEc---CCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence 556655433 2345688888676665 4 47999999975555655433 23333334344568999999
Q ss_pred ecCCeEeeeecc
Q psy6213 291 SRVSIIPRAKNI 302 (330)
Q Consensus 291 ~~dg~i~iw~~~ 302 (330)
+.|+.|++|+..
T Consensus 282 kGD~tIr~~e~~ 293 (568)
T PTZ00420 282 KGDGNCRYYQHS 293 (568)
T ss_pred ECCCeEEEEEcc
Confidence 999999999864
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=221.06 Aligned_cols=278 Identities=19% Similarity=0.254 Sum_probs=229.5
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.|...|..+++.+....++++ ||++++|+-..++......+..... +-...+++-+.++.++++|+.|+.+.+|.
T Consensus 12 gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g----~i~~~i~y~e~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKG----FIANSICYAESDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred cCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcc----eeeccceeccccCcceEeecccceEEEEe
Confidence 589999999988877678888 9999999988777665443332211 11133677654667799999999999999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
..+ ..+...+.+|+..|+++.... ++. +++|+.|.++++|-. +++...+.+|+..|.+++.-|++ .+++|+
T Consensus 88 ~~~---~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~--~~vTgs 158 (745)
T KOG0301|consen 88 LSQ---AEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN--TYVTGS 158 (745)
T ss_pred cCC---CCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC--cEEecc
Confidence 988 788999999999999999774 444 999999999999976 56677799999999999999998 489999
Q ss_pred cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCe
Q psy6213 161 ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKF 240 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 240 (330)
.|.+|++|.- ++.++++.+|.+.|+.+++-+++ .|++++.||.|+.|++ +++.+....+|...+.++...+++..
T Consensus 159 aDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 159 ADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred CcceeeeccC---CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence 9999999985 56788999999999999999765 4889999999999999 55588889999999999997777664
Q ss_pred EEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccce
Q psy6213 241 HLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 241 l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 304 (330)
+++++ +|++++||+.. ...+.+.-....|+++.+-++|. |++|++||.||||...+.
T Consensus 234 -Ivs~g--EDrtlriW~~~---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 234 -IVSTG--EDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred -EEEec--CCceEEEeecC---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 66776 79999999977 22566665566899999988886 677899999999975543
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=202.33 Aligned_cols=242 Identities=15% Similarity=0.272 Sum_probs=207.6
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|+...++.+...++++ |-+-++||.-+|..+..+... .+ |.+++|+. +.++|++|+.+..+++|
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hk--hi------vk~~af~~-ds~~lltgg~ekllrvf 127 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHK--HI------VKAVAFSQ-DSNYLLTGGQEKLLRVF 127 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhh--he------eeeEEecc-cchhhhccchHHHhhhh
Confidence 599999999999988885555 999999999998766554322 11 68999998 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|++.+ ..+...+.+|.+.|..+.|.. ..+.+++++.|++|++||.+++..++++. .+.+|+++.++++|. +++-
T Consensus 128 dln~p--~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~--ilTi 201 (334)
T KOG0278|consen 128 DLNRP--KAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGR--ILTI 201 (334)
T ss_pred hccCC--CCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCC--EEEE
Confidence 99874 456677889999999999997 78889998999999999999999999998 677899999999998 4555
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc-eeccccceEEEEEcCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY-SINTIASVSRIKWRPQR 238 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~ 238 (330)
...+.|.+||..+ ...++.++ ....|.+..++|+...+++|+.|..++.||..++..+.. ..+|.++|.++.|+|+|
T Consensus 202 a~gssV~Fwdaks-f~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 202 AYGSSVKFWDAKS-FGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG 279 (334)
T ss_pred ecCceeEEecccc-ccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC
Confidence 6678899999987 55555555 456789999999999999999999999999999977666 47889999999999999
Q ss_pred CeEEEEeecccCCeEEEEEccCCCc
Q psy6213 239 KFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
. +.++++ +||+|++|....++.
T Consensus 280 E-~yAsGS--EDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 280 E-LYASGS--EDGTIRLWQTTPGKT 301 (334)
T ss_pred c-eeeccC--CCceEEEEEecCCCc
Confidence 9 588888 899999999876543
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=196.90 Aligned_cols=268 Identities=14% Similarity=0.226 Sum_probs=210.5
Q ss_pred cccceEEEEeeCCCe-eecC--CCeEEEEEcCCc-ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 4 LSPVHKHGLKADNGL-AQPS--RNVFKIFLIKDT-EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.+.|.+++|||.... +++| ||+||+|+++.. .... .....+..+|.+++|+. ++..+++|+.|+.+++|
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------KAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLW 99 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc------hhhhccCCCeEEEEEcc-CCceEEeeccCCceEEE
Confidence 567999999995555 6566 999999999874 3322 23344566789999998 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCC--EEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESN--WLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
|+.+ + ....+..|.++|..+.|-+ ... .|++|+.|++|+.||.+...++.++. -.+.+.++..- .+ +++
T Consensus 100 DL~S---~-Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~p-m~v 170 (347)
T KOG0647|consen 100 DLAS---G-QVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YP-MAV 170 (347)
T ss_pred EccC---C-CeeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--Cc-eeE
Confidence 9998 3 5666788999999999986 544 79999999999999999999988887 45567776543 33 688
Q ss_pred EEecCCcEEEEecCCCccceeeec-cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc--ccceecc---------
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFT-AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS--LEYSINT--------- 225 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~--------- 225 (330)
++..+..|.+|+++++....+..+ ..+-.+++++..++....+.|+-+|.+.+..+..+.. -..+.-|
T Consensus 171 Vata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 171 VATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred EEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 889999999999987543333222 2344688999999888889999999999998877522 1111111
Q ss_pred ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEee
Q psy6213 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 226 ~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
-..|.+++|+|.-..++..++ ||+..+||-....+ +.....|..+|++.+|+.+|.++|-+.
T Consensus 251 VYaVNsi~FhP~hgtlvTaGs---DGtf~FWDkdar~k-Lk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGS---DGTFSFWDKDARTK-LKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEEecceEeecccceEEEecC---CceEEEecchhhhh-hhccCcCCCccceeEecCCCCEEEEEe
Confidence 246889999998887666665 99999999877655 777788999999999999999887763
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-30 Score=194.00 Aligned_cols=238 Identities=20% Similarity=0.253 Sum_probs=199.5
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec--CCcEEEEEeec
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ--DGTMRLFDIRC 129 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--d~~i~i~d~~~ 129 (330)
..|+++.|++ +|.++++++.|..+++||..+ +++..++..++-.+..++|.. ..+.++.++. |.+|+..++.+
T Consensus 15 ~~i~sl~fs~-~G~~litss~dDsl~LYd~~~---g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 15 GKINSLDFSD-DGLLLITSSEDDSLRLYDSLS---GKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred CceeEEEecC-CCCEEEEecCCCeEEEEEcCC---CceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeec
Confidence 3479999999 999999999999999999988 788888888888899999986 5666666665 88999999999
Q ss_pred CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 130 QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 130 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
.+.++.+.+|...|.+++.+|.++ .+++++.|++|++||++. .++...+... .-..++|.|+|-++|++...+.|+
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~-~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRV-KKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecC-CCCceEEecC--CCcceeECCCCcEEEEecCCCeEE
Confidence 999999999999999999999997 799999999999999996 4444444432 233578999999999999888999
Q ss_pred EEeCCCCcc-cccee----ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCe---EEEEEe
Q psy6213 210 VWDLSIKPS-LEYSI----NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV---SGLAWR 281 (330)
Q Consensus 210 i~d~~~~~~-~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~ 281 (330)
+||++.... +.... +.....+.+.|+|||++++.+.. .+.+++.|.-++.. ...+..+...- .+..|+
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~---~s~~~~lDAf~G~~-~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN---ASFIYLLDAFDGTV-KSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC---CCcEEEEEccCCcE-eeeEeeccCCCCcceeEEEC
Confidence 999987632 22111 34578999999999999888885 99999999988875 66776665432 577899
Q ss_pred cCCCEEEEeecCCeEeeeecc
Q psy6213 282 GDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 282 ~~~~~l~s~~~dg~i~iw~~~ 302 (330)
||++++++|+.||+|.+|...
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcC
Confidence 999999999999999999863
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=211.03 Aligned_cols=243 Identities=15% Similarity=0.324 Sum_probs=204.5
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|..+|.-+.||||.++ ++|| +..+.+||..+|+....+... +.+++.+++|.| ++..+++|+.|+.+..|
T Consensus 267 gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~------~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~w 339 (519)
T KOG0293|consen 267 GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG------LGFSVSSCAWCP-DGFRFVTGSPDRTIIMW 339 (519)
T ss_pred cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC------cCCCcceeEEcc-CCceeEecCCCCcEEEe
Confidence 58999999999999999 8999 999999999999877655422 346679999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecc-cccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 80 NLGQISRSKQERVFND-HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
|++. .......+ ....|.+++..+ ||+++++.+.|..|++++.++........ ...+|+++..+.+++ ++++
T Consensus 340 dlDg----n~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k-~~Lv 412 (519)
T KOG0293|consen 340 DLDG----NILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGK-LALV 412 (519)
T ss_pred cCCc----chhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCc-EEEE
Confidence 9986 23333332 236799999998 89999999999999999998776665444 557899999999999 4777
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCC--eEEEEEcC-CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEc
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGP--IFACDWHP-EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWR 235 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 235 (330)
.-.+..+++||++. ...+..+.+|+.. +..-+|.. +..++++|++|+.|+||+..+++.+....+|...|++++|+
T Consensus 413 nL~~qei~LWDl~e-~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 413 NLQDQEIHLWDLEE-NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred EcccCeeEEeecch-hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecC
Confidence 77889999999995 6777888888764 33334544 55899999999999999999998899999999999999999
Q ss_pred CCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
|..+.++|+++ +||+|+||-....
T Consensus 492 P~~p~m~ASas--DDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 492 PADPEMFASAS--DDGTIRIWGPSDN 515 (519)
T ss_pred CCCHHHhhccC--CCCeEEEecCCcc
Confidence 99999999999 8999999987644
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=216.52 Aligned_cols=241 Identities=14% Similarity=0.256 Sum_probs=206.3
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
.+.|+++.|+++|.+|+.| +|.|.|||..+.+....+..+ +...|.+++|+ ...+.+|+.++.|..+|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~------h~~rvg~laW~---~~~lssGsr~~~I~~~dv 287 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS------HASRVGSLAWN---SSVLSSGSRDGKILNHDV 287 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC------cCceeEEEecc---CceEEEecCCCcEEEEEE
Confidence 5789999999999998888 999999999987777666652 22336899996 589999999999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe-
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS- 160 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~- 160 (330)
.... .....+.+|...|..++|++ ++.++|+|+.|+.+.|||....++...+..|...|..++|+|-...+||+|+
T Consensus 288 R~~~--~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG 364 (484)
T KOG0305|consen 288 RISQ--HVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG 364 (484)
T ss_pred ecch--hhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC
Confidence 8732 22224889999999999998 9999999999999999999888999999999999999999998888899974
Q ss_pred -cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe--cCCcEEEEeCCCCccccceeccccceEEEEEcCC
Q psy6213 161 -ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS--RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQ 237 (330)
Q Consensus 161 -~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 237 (330)
.|++|++||..+ +..+.... -...|.++.|++..+-|+++. .++.|.||+..+.+.......|...|..++++||
T Consensus 365 s~D~~i~fwn~~~-g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 365 SADRCIKFWNTNT-GARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPD 442 (484)
T ss_pred CcccEEEEEEcCC-CcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCC
Confidence 589999999997 55555544 467899999999887666654 5678999999999889999999999999999999
Q ss_pred CCeEEEEeecccCCeEEEEEccCC
Q psy6213 238 RKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
|..++.+++ |.++++|++-..
T Consensus 443 g~~i~t~a~---DETlrfw~~f~~ 463 (484)
T KOG0305|consen 443 GETIVTGAA---DETLRFWNLFDE 463 (484)
T ss_pred CCEEEEecc---cCcEEeccccCC
Confidence 998666554 999999998764
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=191.33 Aligned_cols=239 Identities=20% Similarity=0.360 Sum_probs=204.8
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
...|.+++|+. +|..|++|+.|+++.+|+++.. +........+|.+.|-.++|+|....++++++.|.+|++||++.+
T Consensus 20 ~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 20 VQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhcceEEEEcc-cCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 34468999999 9999999999999999999874 233344567899999999999989999999999999999999999
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
++........+.+ -+.|+|+|++ +++++.|..|...|.++ .+.....+ ....+..++|+.++.+++.....|+|.|
T Consensus 98 k~~~~i~~~~eni-~i~wsp~g~~-~~~~~kdD~it~id~r~-~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 98 KCTARIETKGENI-NITWSPDGEY-IAVGNKDDRITFIDART-YKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred cEEEEeeccCcce-EEEEcCCCCE-EEEecCcccEEEEEecc-cceeehhc-ccceeeeeeecCCCCEEEEecCCceEEE
Confidence 9998887555544 5789999995 88999999999999997 44444333 4566888999988888888888899999
Q ss_pred EeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEe
Q psy6213 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIAS 290 (330)
Q Consensus 211 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 290 (330)
......+.+.....|.....++.|+|+|+| +|+++ .|-.+.+||+...-+ ...+..+.=+|..+.|+.||++||++
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~Gry-fA~Gs--ADAlvSLWD~~ELiC-~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRY-FATGS--ADALVSLWDVDELIC-ERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCce-Eeecc--ccceeeccChhHhhh-heeeccccCceEEEEeccCcceeecc
Confidence 999988888888889999999999999998 66666 699999999987755 78888899999999999999999999
Q ss_pred ecCCeEeee
Q psy6213 291 SRVSIIPRA 299 (330)
Q Consensus 291 ~~dg~i~iw 299 (330)
|+|..|-|=
T Consensus 250 SEDh~IDIA 258 (313)
T KOG1407|consen 250 SEDHFIDIA 258 (313)
T ss_pred CccceEEeE
Confidence 999988663
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=205.55 Aligned_cols=285 Identities=13% Similarity=0.230 Sum_probs=221.8
Q ss_pred cccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCc-EEEEEcCCCcEEEEE
Q psy6213 4 LSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEEN-HIATGATNGAVVVWN 80 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iw~ 80 (330)
.++|+++.|+|.... +++| |+.++||.++.........++. ..+++.+.+|.| +|. .+++++....++.||
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-----~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-----EKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-----ccCccceeeecC-CCceEEEecccceEEEEee
Confidence 478999999999999 8999 9999999988643322222221 134578999999 776 899999999999999
Q ss_pred CCCCCCCceeEEecccc-cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 81 LGQISRSKQERVFNDHK-RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
+.+.+ ...+....++. ..+.....+| ++++|+..|..|.|.+....+++.+..++ -.+.|..++|+.+++ .+++.
T Consensus 287 le~ak-~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk-~l~~~ 362 (514)
T KOG2055|consen 287 LETAK-VTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSK-ELLAS 362 (514)
T ss_pred ccccc-cccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCc-EEEEE
Confidence 98732 23333333443 4677888898 88999999999999999999999999998 567899999999998 57777
Q ss_pred ecCCcEEEEecCCCccceeeeccCCC-CeEEEEEcCCCCEEEEEecCCcEEEEeCCCC------ccccceeccccceEEE
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSG-PIFACDWHPEHAWLATASRDKTIKVWDLSIK------PSLEYSINTIASVSRI 232 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~~ 232 (330)
+.+|.|.+||++. ..+++.+....+ .-++++.++++.+||+|+..|.|.|||..+. +.+.........|+.+
T Consensus 363 ~~~GeV~v~nl~~-~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl 441 (514)
T KOG2055|consen 363 GGTGEVYVWNLRQ-NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL 441 (514)
T ss_pred cCCceEEEEecCC-cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence 7789999999998 466777764222 2356777899999999999999999996543 2344444556789999
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee---cCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT---EHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.|+|+++. ++.++......+++-.+.+... ...++ ..-+.|+||+|+|.+.+||.|..+|.+.+|+.
T Consensus 442 ~Fn~d~qi-LAiaS~~~knalrLVHvPS~TV-FsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 442 QFNHDAQI-LAIASRVKKNALRLVHVPSCTV-FSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eeCcchhh-hhhhhhccccceEEEeccceee-eccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 99999995 6666655788999999876532 22222 22356999999999999999999999999975
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=210.82 Aligned_cols=287 Identities=13% Similarity=0.179 Sum_probs=229.4
Q ss_pred CCCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 1 MAYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 1 ~~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
++|-+-|.++.+|...+.+.+| .|.|+|||+....-.. ....-....-..-+.++...| +++-|++|+.-.++.||
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~--PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKS--PVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIW 492 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCC--ccccccccCcccceeeeEecC-CCceEEeccccceeeee
Confidence 4788999999999999986666 9999999998642111 111111111122368888999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|+.... ......+.........++.+| |.+..+++..||.|.|||+.+...++.+++|.+.+.|+..+++|.. |.+|
T Consensus 493 DLAapT-prikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtk-lWTG 569 (705)
T KOG0639|consen 493 DLAAPT-PRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTK-LWTG 569 (705)
T ss_pred eccCCC-cchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCce-eecC
Confidence 998732 223333444446678899999 8999999999999999999999999999999999999999999985 9999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
+-|.+|+.||+++..++ ... .....|.++.++|++.+++.|-.++.+.+...... .......|++-|.++.|.+.|+
T Consensus 570 GlDntvRcWDlregrql-qqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGk 646 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQL-QQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGK 646 (705)
T ss_pred CCccceeehhhhhhhhh-hhh-hhhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCc
Confidence 99999999999984432 222 23578999999999999999999999999887655 4555566789999999999999
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
+++.++ .|+-+..|...-+.. +.... ....|.++..+.|.++|++|+.|....+|+.
T Consensus 647 wfvStG---kDnlLnawrtPyGas-iFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 647 WFVSTG---KDNLLNAWRTPYGAS-IFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeeecC---chhhhhhccCccccc-eeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 855555 599999999887765 33333 3568999999999999999999999888864
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-31 Score=200.91 Aligned_cols=241 Identities=20% Similarity=0.307 Sum_probs=205.3
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCc-----eeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSK-----QERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~ 128 (330)
+.|..|+| ++++|++|+.||-|.+||..+++..+ ....+--+..+|.|+.|+. +..++++|+.||.|++|.++
T Consensus 216 ~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 216 VECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred hhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEe
Confidence 57899999 99999999999999999998732111 1123345778999999997 99999999999999999999
Q ss_pred cCceeeeee-cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCc
Q psy6213 129 CQESTKIFH-SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKT 207 (330)
Q Consensus 129 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 207 (330)
+|.+++.+. .|...|+|+.|+.|+.. +++++.|.++++.-+++ +++++.+++|.+.|+...|.++|..+++++.||+
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKS-GK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKS-GKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCcch-hhcccccceEEEecccc-chhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 999999987 79999999999999995 88999999999999998 7889999999999999999999999999999999
Q ss_pred EEEEeCCCCccccceec--cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec---CCCCeEEEEEec
Q psy6213 208 IKVWDLSIKPSLEYSIN--TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE---HKDVVSGLAWRG 282 (330)
Q Consensus 208 i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~ 282 (330)
|++|+.++.++...... .+.+|..+..-|.++.-++.|. ..++++|.++... . +..+.. ..+...+.+.+|
T Consensus 372 vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~qGQ-v-VrsfsSGkREgGdFi~~~lSp 447 (508)
T KOG0275|consen 372 VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQGQ-V-VRSFSSGKREGGDFINAILSP 447 (508)
T ss_pred EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEeccce-E-EeeeccCCccCCceEEEEecC
Confidence 99999999877655443 5678899988888776688887 7999999998743 2 444432 234566778999
Q ss_pred CCCEEEEeecCCeEeeeecc
Q psy6213 283 DPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 283 ~~~~l~s~~~dg~i~iw~~~ 302 (330)
.|.++.+.++|+.++.|...
T Consensus 448 kGewiYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 448 KGEWIYCIGEDGVLYCFSVL 467 (508)
T ss_pred CCcEEEEEccCcEEEEEEee
Confidence 99999999999999998643
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-30 Score=199.21 Aligned_cols=229 Identities=25% Similarity=0.408 Sum_probs=193.1
Q ss_pred CcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecC--CCEEEEEecCCcEEEEEeecCce----eeeee
Q psy6213 64 ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE--SNWLISGSQDGTMRLFDIRCQES----TKIFH 137 (330)
Q Consensus 64 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~----~~~~~ 137 (330)
++.+++|+.||.+++||.. ++....+.+|.++|.+++|.-.+ ...|++++.|.++++|-.+.++. +...+
T Consensus 115 ~~~IltgsYDg~~riWd~~----Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~ 190 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK----GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR 190 (423)
T ss_pred CceEEEeecCCeeEEEecC----CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhc
Confidence 5899999999999999987 58888999999999998886412 23599999999999999987754 33445
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCC------------------------ccceeeeccCCCCeEEEEEc
Q psy6213 138 SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP------------------------EKCFYQFTAHSGPIFACDWH 193 (330)
Q Consensus 138 ~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~------------------------~~~~~~~~~~~~~i~~~~~~ 193 (330)
+|...|.++...+++. .+++|+.|.+|.+|+..+. ..++..+.+|..+|.++.|+
T Consensus 191 GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred ccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 8999999999999998 6999999999999993211 13556788999999999999
Q ss_pred CCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC--ccceEeecC
Q psy6213 194 PEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY--IPLASFTEH 271 (330)
Q Consensus 194 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~ 271 (330)
+ ...+++++.|.+|+.||+.++.. .........+.++..+|.... +++++ .|..+++||.+++. .+.+.+.+|
T Consensus 270 d-~~v~yS~SwDHTIk~WDletg~~-~~~~~~~ksl~~i~~~~~~~L-l~~gs--sdr~irl~DPR~~~gs~v~~s~~gH 344 (423)
T KOG0313|consen 270 D-ATVIYSVSWDHTIKVWDLETGGL-KSTLTTNKSLNCISYSPLSKL-LASGS--SDRHIRLWDPRTGDGSVVSQSLIGH 344 (423)
T ss_pred C-CCceEeecccceEEEEEeecccc-eeeeecCcceeEeecccccce-eeecC--CCCceeecCCCCCCCceeEEeeecc
Confidence 7 67899999999999999999844 444556788999999998885 55555 59999999998764 456788999
Q ss_pred CCCeEEEEEec-CCCEEEEeecCCeEeeeecc
Q psy6213 272 KDVVSGLAWRG-DPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 272 ~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~ 302 (330)
...|.++.|+| +...|++++.|+++++|+..
T Consensus 345 ~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 345 KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred hhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 99999999999 67789999999999999864
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-31 Score=215.15 Aligned_cols=285 Identities=16% Similarity=0.197 Sum_probs=227.1
Q ss_pred EEEEe-eCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC
Q psy6213 9 KHGLK-ADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS 85 (330)
Q Consensus 9 ~~~~s-~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 85 (330)
++..+ |.+++ +++| ||.|++|+.....-..... .......+...|++++... +++.|++++.|-+|++|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCc
Confidence 34444 45665 7777 9999999987633211000 0011122233357777776 88899999999999999998733
Q ss_pred CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc--eeee--------ee-cCCCCeEEEEEcCCCCc
Q psy6213 86 RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE--STKI--------FH-SNTESVRDVEFNPHSPY 154 (330)
Q Consensus 86 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~--------~~-~~~~~v~~~~~~~~~~~ 154 (330)
..+..++..|+..|.|+++-..+..++|+||-|+.|.+||++++. .+.. +. ++...|++++.++.+.
T Consensus 107 -~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t- 184 (735)
T KOG0308|consen 107 -TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT- 184 (735)
T ss_pred -chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-
Confidence 367788899999999999944488999999999999999999772 2222 22 5778899999999996
Q ss_pred EEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEE
Q psy6213 155 AFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKW 234 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 234 (330)
++++|+.++.+++||.++ .+.+..+++|...|..+..++||+.+++++.||+|++||+...+++....-|...+.++..
T Consensus 185 ~ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred EEEecCcccceEEecccc-ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEee
Confidence 899999999999999999 5667778899999999999999999999999999999999999888888889889999999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+|+-..+++++ .||.|..=|+++... ...+-....+|..+..+...+-+-+++.|+.|+-|+..
T Consensus 264 ~~sf~~vYsG~---rd~~i~~Tdl~n~~~-~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 264 SPSFTHVYSGG---RDGNIYRTDLRNPAK-STLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred CCCcceEEecC---CCCcEEecccCCchh-heEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 99998855555 599999999998755 44444556788888888655556788899999999854
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=187.66 Aligned_cols=245 Identities=22% Similarity=0.308 Sum_probs=200.3
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEE-EecCCCEEEEEecCCcEEEEEeecCce-
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSF-HYVESNWLISGSQDGTMRLFDIRCQES- 132 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~- 132 (330)
.++...- .+.+||+++.|+.|+|+..++....+.+..+.+|.++|..++| +|.-+.+||+++.||.|.||.-.+++-
T Consensus 15 Hda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~ 93 (299)
T KOG1332|consen 15 HDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT 93 (299)
T ss_pred hHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh
Confidence 3444444 7899999999999999999986656888999999999999999 566789999999999999999887743
Q ss_pred -eeeeecCCCCeEEEEEcCCC-CcEEEEEecCCcEEEEecCCCc--cceeeeccCCCCeEEEEEcCC---C---------
Q psy6213 133 -TKIFHSNTESVRDVEFNPHS-PYAFASVSENGTIQQWDVRRPE--KCFYQFTAHSGPIFACDWHPE---H--------- 196 (330)
Q Consensus 133 -~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~---~--------- 196 (330)
......|...|++++|.|.+ ..+|++++.||.|.+.+.+..+ ...+....|.-.+++++|.|. |
T Consensus 94 k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~ 173 (299)
T KOG1332|consen 94 KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAA 173 (299)
T ss_pred hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccc
Confidence 44456789999999999974 2478899999999999988752 223455679999999999995 4
Q ss_pred --CEEEEEecCCcEEEEeCCCCc--cccceeccccceEEEEEcCCC---CeEEEEeecccCCeEEEEEccCCCcc--ceE
Q psy6213 197 --AWLATASRDKTIKVWDLSIKP--SLEYSINTIASVSRIKWRPQR---KFHLASCSLVVDSSVNVWDIRRPYIP--LAS 267 (330)
Q Consensus 197 --~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~~~~i~i~d~~~~~~~--~~~ 267 (330)
+.|++|+.|..|+||+....+ ....+..|...|+.++|.|.- +..+++++ .||++.||-.+....+ ...
T Consensus 174 ~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tl 251 (299)
T KOG1332|consen 174 KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTL 251 (299)
T ss_pred ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCcccccc
Confidence 569999999999999998762 233466789999999999973 45688998 8999999987743221 333
Q ss_pred eecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 268 FTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 268 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+......++.+.|++.|+.|+.++.|+.+.+|+..
T Consensus 252 l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 252 LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 44456789999999999999999999999999754
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=200.25 Aligned_cols=236 Identities=17% Similarity=0.299 Sum_probs=205.1
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
+.++...| ..+.+++|+.|..+.++|... .+.+..+++|...|+.+.++| +...+++++.|..|++|........
T Consensus 222 i~ald~~~-s~~~ilTGG~d~~av~~d~~s---~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 222 ITALDIIP-SSSKILTGGEDKTAVLFDKPS---NQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred eeEEeecC-CCCcceecCCCCceEEEecch---hhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCc
Confidence 57788888 678999999999999999988 788999999999999999998 8899999999999999999888888
Q ss_pred eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc--CCCCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 134 KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA--HSGPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 134 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
.....|..+|+.+..+|.|+| |++++.||+..+.|++++.. +..... ..-.+++.+|+|||.+|.+|..||.++||
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeY-llsAs~d~~w~Fsd~~~g~~-lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEY-LLSASNDGTWAFSDISSGSQ-LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW 374 (506)
T ss_pred cccccccccceeeeeccCCcE-EEEecCCceEEEEEccCCcE-EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence 888889999999999999996 88999999999999998543 333322 23458999999999999999999999999
Q ss_pred eCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC-CCCeEEEEEecCCCEEEEe
Q psy6213 212 DLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH-KDVVSGLAWRGDPQLFIAS 290 (330)
Q Consensus 212 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~ 290 (330)
|+..+.....+.+|.++|..++|+.+|-||++++ +|+.|++||+++.+. ..++... ..++.++.|.+.|.+|+.+
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a---dd~~V~lwDLRKl~n-~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA---DDGSVKLWDLRKLKN-FKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEEEe---cCCeEEEEEehhhcc-cceeeccccccceeEEEcCCCCeEEee
Confidence 9999988888888999999999999999866665 499999999998875 4444432 3479999999999999999
Q ss_pred ecCCeEeeee
Q psy6213 291 SRVSIIPRAK 300 (330)
Q Consensus 291 ~~dg~i~iw~ 300 (330)
+.|=.|++++
T Consensus 451 g~~l~Vy~~~ 460 (506)
T KOG0289|consen 451 GSDLQVYICK 460 (506)
T ss_pred cceeEEEEEe
Confidence 8887777665
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=188.19 Aligned_cols=236 Identities=17% Similarity=0.285 Sum_probs=193.7
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCC--CEEEEEecCCcEEEEEe
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVES--NWLISGSQDGTMRLFDI 127 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~~l~~~~~d~~i~i~d~ 127 (330)
+..++++++. ++.++|+|+.|.+|+|||+.. ......+-.|.+.|+++.|.+ .. +.|++|+.||.|.+|+.
T Consensus 42 H~~sitavAV---s~~~~aSGssDetI~IYDm~k---~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~ 114 (362)
T KOG0294|consen 42 HAGSITALAV---SGPYVASGSSDETIHIYDMRK---RKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRV 114 (362)
T ss_pred cccceeEEEe---cceeEeccCCCCcEEEEeccc---hhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEc
Confidence 4456788888 579999999999999999988 677778888999999999987 33 38999999999999999
Q ss_pred ecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCc
Q psy6213 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKT 207 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 207 (330)
...+++..+++|...|+.++.+|.++ +.++.+.|+.++.||+-++.. -..++ -....+.+.|+|.|.+++.+..+ .
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~-a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~ 190 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRV-AFVLN-LKNKATLVSWSPQGDHFVVSGRN-K 190 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCcc-ceeec-cCCcceeeEEcCCCCEEEEEecc-E
Confidence 99999999999999999999999999 788999999999999987433 33332 12233459999999999998885 5
Q ss_pred EEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEE--ecCCC
Q psy6213 208 IKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAW--RGDPQ 285 (330)
Q Consensus 208 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~ 285 (330)
|-+|.+.+.... ........+.++.|-..+. +++++ +++.|.+||.... .+...+.+|...|.++.+ .|++.
T Consensus 191 i~i~q~d~A~v~-~~i~~~~r~l~~~~l~~~~-L~vG~---d~~~i~~~D~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 191 IDIYQLDNASVF-REIENPKRILCATFLDGSE-LLVGG---DNEWISLKDTDSD-TPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred EEEEecccHhHh-hhhhccccceeeeecCCce-EEEec---CCceEEEeccCCC-ccceeeecchhheeeeEEEecCCce
Confidence 899998877333 3333335677777766554 46655 4999999999885 458899999999999984 45789
Q ss_pred EEEEeecCCeEeeeecc
Q psy6213 286 LFIASSRVSIIPRAKNI 302 (330)
Q Consensus 286 ~l~s~~~dg~i~iw~~~ 302 (330)
+|+++|.||.|++|+..
T Consensus 265 ~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 265 YLVTASSDGFIKVWDID 281 (362)
T ss_pred EEEEeccCceEEEEEcc
Confidence 99999999999999854
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=187.29 Aligned_cols=266 Identities=17% Similarity=0.235 Sum_probs=208.8
Q ss_pred cccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
.+.|.++.|+|.+.. |+++ ||.+++|+....++...+. +..++.+++|.+ ...+++|+.||.|+.+|+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~--------~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK--------HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee--------cCCceeeeeccC--CceEEEeccCceEEEEEe
Confidence 467999999998888 7777 9999999999875544332 223368999984 788999999999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
.+ .....+..|..+|.|+.+++ ..+.+++|+.|++|++||.++......+. ....|.++....+ .|++|+.
T Consensus 83 n~----~~~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~---~LvVg~~ 153 (323)
T KOG1036|consen 83 NT----GNEDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGN---RLVVGTS 153 (323)
T ss_pred cC----CcceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccc-cCceEEEEeccCC---EEEEeec
Confidence 87 33445667999999999998 88899999999999999999866666665 3447888876643 5889999
Q ss_pred CCcEEEEecCCCccceeee-ccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc----cccee---------cccc
Q psy6213 162 NGTIQQWDVRRPEKCFYQF-TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS----LEYSI---------NTIA 227 (330)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~---------~~~~ 227 (330)
+..+.+||+++...+.+.. ..-+-.+.++++-|++.-+++++-||.+.+=.+...+. ...+. ....
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 9999999999865544222 22345789999999888899999999988866554411 11111 1235
Q ss_pred ceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeec
Q psy6213 228 SVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 228 ~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
+|++++|+|-... +++++ .||.|.+||+.+.+. +..+...+..|..++|+.||..||.++.
T Consensus 234 PVNai~Fhp~~~t-faTgG--sDG~V~~Wd~~~rKr-l~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 234 PVNAIAFHPIHGT-FATGG--SDGIVNIWDLFNRKR-LKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EeceeEeccccce-EEecC--CCceEEEccCcchhh-hhhccCCCCceEEEEeccCCCeEEEEec
Confidence 8999999999877 55555 599999999998876 6677766778999999999999999875
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=213.08 Aligned_cols=292 Identities=15% Similarity=0.232 Sum_probs=230.5
Q ss_pred CCcccceEEEEee------------CCCeeecC-CCeEEEEEcCCc---ceeee--ecee--------------------
Q psy6213 2 AYLSPVHKHGLKA------------DNGLAQPS-RNVFKIFLIKDT---EFVET--HNLR-------------------- 43 (330)
Q Consensus 2 ~H~~~v~~~~~s~------------~~~~~~~g-d~~i~iw~~~~~---~~~~~--~~~~-------------------- 43 (330)
-|...|+.+.--| .+.+++|+ |++|++|+++.+ +.... +...
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 4666677766555 45567888 999999999862 11110 0000
Q ss_pred -----eccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEe--cCCCEEEEE
Q psy6213 44 -----VGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHY--VESNWLISG 116 (330)
Q Consensus 44 -----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~~l~~~ 116 (330)
......-.+.+.+++.+| ++++||+|..-|++++|++.+ ......+..|+..|.|+.|+. ...++|+++
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~---l~~~~~~eAHesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQE---LEYTCFMEAHESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred cccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehh---hhhhhheecccceeEEEeecCchhhhHhhhhc
Confidence 000112234579999999 999999999999999999988 677777889999999999984 135689999
Q ss_pred ecCCcEEEEEeec-CceeeeeecCCCCeEEEEEcCCC-CcEEEEEecCCcEEEEecCCCccceeeeccC-----CCCeEE
Q psy6213 117 SQDGTMRLFDIRC-QESTKIFHSNTESVRDVEFNPHS-PYAFASVSENGTIQQWDVRRPEKCFYQFTAH-----SGPIFA 189 (330)
Q Consensus 117 ~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~ 189 (330)
+.|.-|.+||... ..+++++.+|...|+++.|...| +..+++++.|..|.+--.++ ......+..| ...++.
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk-~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQK-ASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcc-ccCceeccccccccccceEEE
Confidence 9999999999863 45678889999999999998776 33578888887765443332 2222223222 356899
Q ss_pred EEEcCCCCEEEEEecCCcEEEEeCCCCccccceec---cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccce
Q psy6213 190 CDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN---TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA 266 (330)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~ 266 (330)
++..|..+++++++.|..|+|||+.++++...+.+ +++....+...|.|.|++.+++ |.++.++|+.++++ +.
T Consensus 602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs---dktl~~~Df~sgEc-vA 677 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS---DKTLCFVDFVSGEC-VA 677 (1080)
T ss_pred eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec---CCceEEEEeccchh-hh
Confidence 99999999999999999999999999977655544 5677889999999999888887 99999999999987 88
Q ss_pred EeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 267 SFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+.+|...|+++.|.+|.+.|++.+.||.|.||+..
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 999999999999999999999999999999999854
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=187.81 Aligned_cols=241 Identities=17% Similarity=0.223 Sum_probs=192.1
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE 131 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 131 (330)
.+|.+++|||+...++++++.||+|++|+++..+.... +....|.++|.+++|+. ++..+++|+.|+.+++||+.+++
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCCC
Confidence 44799999997788888999999999999987432222 45567999999999995 89999999999999999999984
Q ss_pred eeeeeecCCCCeEEEEEcCCCC-cEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 132 STKIFHSNTESVRDVEFNPHSP-YAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 132 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
...+..|.++|.++.|-+... .+|++|+.|.+|+.||++. ..++.++. ..+.+.++..- ..+++.+..++.|.+
T Consensus 106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-SNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC-CCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 556777999999999987654 3689999999999999997 55666665 35667666653 568899999999999
Q ss_pred EeCCCCccccc--eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC-ccceEeecCCC---------CeEEE
Q psy6213 211 WDLSIKPSLEY--SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY-IPLASFTEHKD---------VVSGL 278 (330)
Q Consensus 211 ~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~---------~v~~~ 278 (330)
|+++++..... ..+..-.+.+++..++.... +.++ -+|.+.+..+..+. ..-..++.|.. .|+++
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~-alGs--iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi 257 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGF-ALGS--IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSI 257 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCce-Eeee--ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecce
Confidence 99988744332 22345678899998888764 5555 59999999998752 12456666652 57889
Q ss_pred EEecCCCEEEEeecCCeEeeeecc
Q psy6213 279 AWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 279 ~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+|+|....|+++|.||+..+|+..
T Consensus 258 ~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 258 AFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EeecccceEEEecCCceEEEecch
Confidence 999999999999999999999743
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=214.30 Aligned_cols=241 Identities=21% Similarity=0.337 Sum_probs=205.2
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|.++++..-+.++.+| |.++++||..++++...+..|... +.++.. .+.++++|+.|.+|++|
T Consensus 247 GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st-------v~~~~~---~~~~~~sgs~D~tVkVW 316 (537)
T KOG0274|consen 247 GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS-------VRCLTI---DPFLLVSGSRDNTVKVW 316 (537)
T ss_pred CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce-------EEEEEc---cCceEeeccCCceEEEE
Confidence 599999999998856665555 999999999999999988877554 355554 45788889999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
++.+ +..+..+.+|.++|.++..+ +.++++|+.|++|++||+.+++++..+.+|...|.++.+.+. + .+++|
T Consensus 317 ~v~n---~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~-~~~Sg 388 (537)
T KOG0274|consen 317 DVTN---GACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-N-RLLSG 388 (537)
T ss_pred eccC---cceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-c-eEEee
Confidence 9998 88999998999999999975 789999999999999999999999999999999999988876 4 69999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec-cccceEEEEEcCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN-TIASVSRIKWRPQR 238 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~ 238 (330)
+.|+.|++||+++..+++..+.+|..-+..+.+ .+++|++++.|++|++||..++++...... +...+..+++. .
T Consensus 389 s~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~ 464 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--K 464 (537)
T ss_pred eeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--c
Confidence 999999999999843889999999998877665 478999999999999999999977666666 56888888887 2
Q ss_pred CeEEEEeecccCCeEEEEEccCCCccceEe
Q psy6213 239 KFHLASCSLVVDSSVNVWDIRRPYIPLASF 268 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~ 268 (330)
+.+++++ .++.+++||++++.. ...+
T Consensus 465 ~~il~s~---~~~~~~l~dl~~~~~-~~~l 490 (537)
T KOG0274|consen 465 EEILCSS---DDGSVKLWDLRSGTL-IRTL 490 (537)
T ss_pred ceEEEEe---cCCeeEEEecccCch-hhhh
Confidence 3345555 499999999999876 4433
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=206.86 Aligned_cols=298 Identities=16% Similarity=0.229 Sum_probs=234.4
Q ss_pred CCCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 1 MAYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 1 ~~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
|.|.+-|+++.|+|.+.. |+++ |.++.+|..++..-+-......+....-...-...-|+| +++.+++-+..|..++
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHL 342 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEE
Confidence 789999999999999955 8888 999999988764322222233333333233347889999 9999999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc----eeeeeecCCCCeEEEEEcCCCCc
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE----STKIFHSNTESVRDVEFNPHSPY 154 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~ 154 (330)
|...+.........+.+|.+.|.+++|.| .|.+|++.+.|.+-++|-.-..+ .+..-+-|.-.++|++|-+.. .
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~-~ 420 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED-L 420 (764)
T ss_pred EeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC-c
Confidence 99555444566677889999999999999 89999999999999998654221 122233477789999998853 3
Q ss_pred EEEEEecCCcEEEEecCCCc------------------------------------------------------------
Q psy6213 155 AFASVSENGTIQQWDVRRPE------------------------------------------------------------ 174 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~------------------------------------------------------------ 174 (330)
.|++|.+...+|+|+.....
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 68999999999999853200
Q ss_pred ---------------cceeeeccCCCCeEEEEEcCCCCEEEEEecCC-----cEEEEeCCCCccccceeccccceEEEEE
Q psy6213 175 ---------------KCFYQFTAHSGPIFACDWHPEHAWLATASRDK-----TIKVWDLSIKPSLEYSINTIASVSRIKW 234 (330)
Q Consensus 175 ---------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 234 (330)
..++.+-+|...|++++.+|+++++|+++... .|++|+..+.........|.-.|+.++|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 11223456888999999999999999998654 4999999998777778889999999999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCcc---ceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccce
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIP---LASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 304 (330)
|||+++|++.+ .|.++.+|........ ......|..-|++..|+|++.+++|+|.|.+|.+|+..+.
T Consensus 581 Spdg~~LLsvs---RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 581 SPDGRYLLSVS---RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCCCcEEEEee---cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99999977666 5999999998655432 2336789999999999999999999999999999986543
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=205.33 Aligned_cols=245 Identities=16% Similarity=0.302 Sum_probs=190.7
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC-CceeEEe-cccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR-SKQERVF-NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
..|.++++.| .|-+|++|+.|..|++||+..... .+..+.+ ......|+++.|++ .++.|++.+...+.+++|-..
T Consensus 168 k~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqakl~DRdG 245 (641)
T KOG0772|consen 168 KIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQAKLLDRDG 245 (641)
T ss_pred eEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCcceeEEccCC
Confidence 3479999999 999999999999999999976321 1112222 33456899999998 777777777788999999764
Q ss_pred Cceeee------------eecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc-----CCCCeEEEEE
Q psy6213 130 QESTKI------------FHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA-----HSGPIFACDW 192 (330)
Q Consensus 130 ~~~~~~------------~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~i~~~~~ 192 (330)
.+.... .++|...++|.+|+|..+..|++++.||++++||+.+.......++. ..-++++++|
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW 325 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence 433222 34688889999999999889999999999999999986655555542 2346899999
Q ss_pred cCCCCEEEEEecCCcEEEEeCCCCcc---ccceeccc--cceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceE
Q psy6213 193 HPEHAWLATASRDKTIKVWDLSIKPS---LEYSINTI--ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLAS 267 (330)
Q Consensus 193 ~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~ 267 (330)
+|+|++||+|+.||.|.+|+...... ......|. ..|+++.||++|++|+ +-+ .|+++++||++..++++..
T Consensus 326 nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll-SRg--~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 326 NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL-SRG--FDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh-hcc--CCCceeeeeccccccchhh
Confidence 99999999999999999999865522 22223344 4899999999999855 444 5999999999999888776
Q ss_pred eecCC--CCeEEEEEecCCCEEEEeec------CCeEeeeec
Q psy6213 268 FTEHK--DVVSGLAWRGDPQLFIASSR------VSIIPRAKN 301 (330)
Q Consensus 268 ~~~~~--~~v~~~~~~~~~~~l~s~~~------dg~i~iw~~ 301 (330)
..+-. .+-+.++|+|+.++|++|+. .|.+.+|+.
T Consensus 403 ~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 65533 35678899999999999874 467888864
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=185.96 Aligned_cols=237 Identities=16% Similarity=0.283 Sum_probs=190.1
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCc--EEEEEcCCCcEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEEN--HIATGATNGAVV 77 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~ 77 (330)
+|.++|++++.+ +.++++| |.+|+|||+........+..| ...|+++.|.+ ... .|++|+.||.|.
T Consensus 41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~H-------agsitaL~F~~-~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 41 AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSH-------AGSITALKFYP-PLSKSHLLSGSDDGHII 110 (362)
T ss_pred ccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceecc-------ccceEEEEecC-CcchhheeeecCCCcEE
Confidence 699999999986 8997766 999999999986655544444 34479999987 443 899999999999
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
+|+... ...+..++.|.+.|+.++.+| .+++.++.+.|+.++.||+-.|+.-..+.- ....+.+.|+|.|.+ |+
T Consensus 111 iw~~~~---W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~-F~ 184 (362)
T KOG0294|consen 111 IWRVGS---WELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDH-FV 184 (362)
T ss_pred EEEcCC---eEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCE-EE
Confidence 999988 899999999999999999999 899999999999999999998887655543 223445999999996 66
Q ss_pred EEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEE--c
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKW--R 235 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~ 235 (330)
.+..+ .|-+|.+.+ ......+. ....+.++.|. ++..|++|+.|+.|.+||............|..+|..+.+ .
T Consensus 185 v~~~~-~i~i~q~d~-A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 185 VSGRN-KIDIYQLDN-ASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTN 260 (362)
T ss_pred EEecc-EEEEEeccc-HhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEec
Confidence 65544 688998886 33333332 23557777776 5678999999999999999988788888999999999984 4
Q ss_pred CCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
|++.+ +++.+ .||.|++||++..
T Consensus 261 ~~~~~-lvTaS--SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 261 PEHEY-LVTAS--SDGFIKVWDIDME 283 (362)
T ss_pred CCceE-EEEec--cCceEEEEEcccc
Confidence 55665 55555 5999999999865
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=210.82 Aligned_cols=239 Identities=17% Similarity=0.256 Sum_probs=205.6
Q ss_pred eeeecccCCcEEEEEcCCCcEEEEECCCCCC---CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC--
Q psy6213 56 DVAWSCIEENHIATGATNGAVVVWNLGQISR---SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-- 130 (330)
Q Consensus 56 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-- 130 (330)
.+..++.++++|++|+.||.|++|+...... ......+..|...|+.+.... +++.|++++.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~ 107 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNT 107 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcc
Confidence 3444544778899999999999999876432 123667788999999999885 8889999999999999999877
Q ss_pred ceeeeeecCCCCeEEEEE-cCCCCcEEEEEecCCcEEEEecCCCcc---------ceeeec-cCCCCeEEEEEcCCCCEE
Q psy6213 131 ESTKIFHSNTESVRDVEF-NPHSPYAFASVSENGTIQQWDVRRPEK---------CFYQFT-AHSGPIFACDWHPEHAWL 199 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~dg~i~i~d~~~~~~---------~~~~~~-~~~~~i~~~~~~~~~~~l 199 (330)
-+..++..|.+.|.|+++ .++.. ++++|+-|+.|.+||++++.. ....+. ++..+|++++.++.|..+
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i 186 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII 186 (735)
T ss_pred hhHhhhhcccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence 567788889999999999 55555 899999999999999996421 122233 678899999999999999
Q ss_pred EEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEE
Q psy6213 200 ATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLA 279 (330)
Q Consensus 200 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 279 (330)
++|+.++.+++||.++.+......+|...|..+..++||..++.+++ ||+|++||+...++ +.++..|...|+++.
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS---DgtIrlWdLgqQrC-l~T~~vH~e~VWaL~ 262 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS---DGTIRLWDLGQQRC-LATYIVHKEGVWALQ 262 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC---CceEEeeeccccce-eeeEEeccCceEEEe
Confidence 99999999999999999888888899999999999999999777665 99999999998876 888999999999999
Q ss_pred EecCCCEEEEeecCCeEeeee
Q psy6213 280 WRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 280 ~~~~~~~l~s~~~dg~i~iw~ 300 (330)
.+|+-..+++|+.||.|+.=+
T Consensus 263 ~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 263 SSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred eCCCcceEEecCCCCcEEecc
Confidence 999999999999999998754
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=197.47 Aligned_cols=254 Identities=15% Similarity=0.277 Sum_probs=208.1
Q ss_pred ccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC--------------ceeEEe-cccccceeEEEEEecCCCEE
Q psy6213 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS--------------KQERVF-NDHKRTVNKVSFHYVESNWL 113 (330)
Q Consensus 49 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--------------~~~~~~-~~~~~~i~~i~~~~~~~~~l 113 (330)
.+..+|.+++++| ++.+.++++.+|+|.=|++.+.... .+...- ..|...+.+++.++ ++++|
T Consensus 140 ~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dgkyl 217 (479)
T KOG0299|consen 140 KHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DGKYL 217 (479)
T ss_pred cccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CCcEE
Confidence 3445679999999 9999999999999999998763321 011111 37888999999998 99999
Q ss_pred EEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEc
Q psy6213 114 ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWH 193 (330)
Q Consensus 114 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 193 (330)
++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.... -+++++.|+.+++|++.. ...+.++.+|.+.|.++...
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~-~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQ-LSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EecCCCceEEEecCcccchhhcccccccceeeeeeecCcc-ceeeeecCCceEEEehhH-hHHHHHHhCCccceeeechh
Confidence 9999999999999999999999999999999999987766 488999999999999997 56778889999999999998
Q ss_pred CCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCC-
Q psy6213 194 PEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK- 272 (330)
Q Consensus 194 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~- 272 (330)
.-++.+-+|+.|+++++|++... ......++.+.+.+++|-.+.. +++++ .+|.|.+|++.+.+.......+|.
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~H--fvsGS--dnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEH--FVSGS--DNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred cccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccc--eeecc--CCceEEEeeecccCceeEeeccccc
Confidence 88888888889999999999554 3444556678999999998876 44455 699999999987764222223332
Q ss_pred ----------CCeEEEEEecCCCEEEEeecCCeEeeeeccceeeecccc
Q psy6213 273 ----------DVVSGLAWRGDPQLFIASSRVSIIPRAKNIKIFIASSRV 311 (330)
Q Consensus 273 ----------~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 311 (330)
..|++++..|...++|+|+.+|.|++|+....+..-..+
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l 419 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL 419 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccccee
Confidence 278999999999999999999999999877665433333
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=208.53 Aligned_cols=275 Identities=18% Similarity=0.289 Sum_probs=219.5
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCc-ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDT-EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
+|.+.-+.++|.|+|.+ ++|| ||.|++|+.... +....... ....|.+++. +.++|++|+.++.|.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-------~g~~v~~ia~---~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-------SGELVSSIAC---YSNHFLTGSEQNTVLR 80 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-------cCceeEEEee---cccceEEeeccceEEE
Confidence 79999999999999999 8888 999999998765 32222221 1122355554 5679999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
|.+.. +..-..+....-++.+++++. ++++++.|+.|-.|++.+..+......+++|.++|.++.|+|+++ +|++
T Consensus 81 y~fps---~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~-fLAv 155 (933)
T KOG1274|consen 81 YKFPS---GEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN-FLAV 155 (933)
T ss_pred eeCCC---CCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC-EEEE
Confidence 99988 444444445668899999996 999999999999999999999999999999999999999999999 7999
Q ss_pred EecCCcEEEEecCCCccceeeecc--------CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec--cccc
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTA--------HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN--TIAS 228 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~ 228 (330)
.+.||.|++||+.+ +....++.+ ....+..++|+|+|..++..+.|+.|++|+..+......... +...
T Consensus 156 ss~dG~v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 156 SSCDGKVQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred EecCceEEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc
Confidence 99999999999997 444443332 134577899999988899999999999999998855333222 3344
Q ss_pred eEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 229 VSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 229 v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+..++|+|+|+||+++. .+|.|.|||..+-. . ......|.+++|.|+.+.+-.-...|...+|.
T Consensus 235 ~~~~~wsPnG~YiAAs~---~~g~I~vWnv~t~~--~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAAST---LDGQILVWNVDTHE--R---HEFKRAVCCEAWKPNANAITLITALGTLGVSP 298 (933)
T ss_pred eEEEEEcCCCcEEeeec---cCCcEEEEecccch--h---ccccceeEEEecCCCCCeeEEEeeccccccCh
Confidence 99999999999955554 69999999998732 1 23346899999999998887777778777775
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=191.12 Aligned_cols=242 Identities=22% Similarity=0.412 Sum_probs=184.6
Q ss_pred CCCcccceEEEEeeCCCe-eecC---CCeEEEEEcCCc----------------ceeeeeceeeccccccccceeeeeec
Q psy6213 1 MAYLSPVHKHGLKADNGL-AQPS---RNVFKIFLIKDT----------------EFVETHNLRVGKNINLNFSCNDVAWS 60 (330)
Q Consensus 1 ~~H~~~v~~~~~s~~~~~-~~~g---d~~i~iw~~~~~----------------~~~~~~~~~~~~~~~~~~~v~~~~~~ 60 (330)
+.|.+.++.+.-++-|+- +++. .|.|+||++... +.+..+..|.+. -.+++||
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E-------Gy~LdWS 220 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE-------GYGLDWS 220 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc-------ceeeecc
Confidence 358889999999988766 5554 999999998641 111112222211 2789999
Q ss_pred ccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce--eeeeec
Q psy6213 61 CIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES--TKIFHS 138 (330)
Q Consensus 61 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~ 138 (330)
|.....|++|..-+.|++|...++.=..-...+.+|+..|..++|+|.....|++|+.||+|+|||++.+.. ....+.
T Consensus 221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA 300 (440)
T KOG0302|consen 221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA 300 (440)
T ss_pred cccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec
Confidence 966777999988899999998872211222345679999999999998899999999999999999998732 233377
Q ss_pred CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCC--CccceeeeccCCCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCC
Q psy6213 139 NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR--PEKCFYQFTAHSGPIFACDWHPE-HAWLATASRDKTIKVWDLSI 215 (330)
Q Consensus 139 ~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~ 215 (330)
|.+.|+-+.|+...+ +|++|++||+++|||+++ .++++..++-|..+|+++.|+|. ...|++++.|.+|.+||+..
T Consensus 301 h~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 301 HNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999999988 899999999999999985 34678899999999999999994 56788999999999999864
Q ss_pred Ccc------------------ccceeccccceEEEEEcCCCCeEEEEeecccCCe
Q psy6213 216 KPS------------------LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSS 252 (330)
Q Consensus 216 ~~~------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 252 (330)
... +.+.......+..+.|+++-+-++++.+ .||-
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa--~dGf 432 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA--IDGF 432 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec--ccce
Confidence 321 1111112456778889988776677766 4553
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=213.63 Aligned_cols=243 Identities=19% Similarity=0.306 Sum_probs=200.9
Q ss_pred eeeeeecccCCcEEEEEc--CCCcEEEEECCCCC---------CCceeEEecccccceeEEEEEecCCCEEEEEecCCcE
Q psy6213 54 CNDVAWSCIEENHIATGA--TNGAVVVWNLGQIS---------RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTM 122 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~---------~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i 122 (330)
|.+++.+| ++..+++|+ .||.++||+.+.-. ..+.+.....|.+.|+|+.|+| ++.+||+|++|+.|
T Consensus 16 IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 16 IFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLV 93 (942)
T ss_pred EEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEeeccCcceE
Confidence 68999999 999999999 89999999975421 2345566778999999999998 99999999999999
Q ss_pred EEEEeec------------------CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCC
Q psy6213 123 RLFDIRC------------------QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHS 184 (330)
Q Consensus 123 ~i~d~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 184 (330)
.+|.... .+....+.+|...|..++|+|++. ++++++.|++|.+||.++ ...+..+++|.
T Consensus 94 ~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~t-F~~~~vl~~H~ 171 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKT-FELLKVLRGHQ 171 (942)
T ss_pred EEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEcccc-ceeeeeeeccc
Confidence 9998762 135677889999999999999998 699999999999999999 48899999999
Q ss_pred CCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccce------eccccceEEEEEcCCCCeEEEEeec-ccCCeEEEEE
Q psy6213 185 GPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYS------INTIASVSRIKWRPQRKFHLASCSL-VVDSSVNVWD 257 (330)
Q Consensus 185 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~~-~~~~~i~i~d 257 (330)
+.|-.+.|.|-|++|++-+.|++|++|+..+....... ......+..+.|+|||++|.+..+. ..-..+.|.+
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 99999999999999999999999999997765332221 2234568899999999986554441 1234677877
Q ss_pred ccCCCccceEeecCCCCeEEEEEec-----CCC------------EEEEeecCCeEeeeec
Q psy6213 258 IRRPYIPLASFTEHKDVVSGLAWRG-----DPQ------------LFIASSRVSIIPRAKN 301 (330)
Q Consensus 258 ~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~------------~l~s~~~dg~i~iw~~ 301 (330)
-.+-+. -..+.+|.+++..+.|+| ..+ .+|+||.|++|.||..
T Consensus 252 R~tWk~-~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 252 RGTWKV-DKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred cCCcee-eeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 655443 667889999999999999 122 6899999999999974
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=180.19 Aligned_cols=234 Identities=15% Similarity=0.222 Sum_probs=186.9
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
.|.++.|+| .++.|++++.||.+++|+... .. ....-.|..++.+++|. +...+++|+.||.|+.+|+++++.
T Consensus 15 ~IS~v~f~~-~~~~LLvssWDgslrlYdv~~---~~-l~~~~~~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 15 GISSVKFSP-SSSDLLVSSWDGSLRLYDVPA---NS-LKLKFKHGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ceeeEEEcC-cCCcEEEEeccCcEEEEeccc---hh-hhhheecCCceeeeecc--CCceEEEeccCceEEEEEecCCcc
Confidence 379999998 888888888999999999987 33 33334588999999998 478899999999999999998875
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEe
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 212 (330)
.. +..|..+++|+.+++... .+++|+.|++|++||.+. ......+.. ...|.++... ++.|++|+.|..+.+||
T Consensus 88 ~~-igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~-~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 88 DQ-IGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN-KVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYD 161 (323)
T ss_pred ee-eccCCCceEEEEeeccCC-eEEEcccCccEEEEeccc-ccccccccc-CceEEEEecc--CCEEEEeecCceEEEEE
Confidence 54 445999999999998776 699999999999999996 344444443 3478888775 77899999999999999
Q ss_pred CCCCccccc--eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC---ccceEeecCCC---------CeEEE
Q psy6213 213 LSIKPSLEY--SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY---IPLASFTEHKD---------VVSGL 278 (330)
Q Consensus 213 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~~~~---------~v~~~ 278 (330)
+++...... .......+.++++-|++.-.+++. -||++.+=.+.... .....++.|.. +|++|
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai 238 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI 238 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence 999865442 333467899999999877645554 59999987665441 11455666652 79999
Q ss_pred EEecCCCEEEEeecCCeEeeeecc
Q psy6213 279 AWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 279 ~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+|+|-.+.|+||+.||.|.+|+..
T Consensus 239 ~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 239 AFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred EeccccceEEecCCCceEEEccCc
Confidence 999999999999999999999853
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-28 Score=177.28 Aligned_cols=232 Identities=17% Similarity=0.295 Sum_probs=195.3
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
++.+++.+.++. +|++|.+++.|....+|-..+ ++.+.++.+|.+.|+++.... +.+.+++|+.|.++++||+++
T Consensus 9 HERplTqiKyN~-eGDLlFscaKD~~~~vw~s~n---GerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 9 HERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLN---GERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred CccccceEEecC-CCcEEEEecCCCCceEEEecC---CceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence 344579999998 999999999999999998777 788999999999999999996 899999999999999999999
Q ss_pred CceeeeeecCCCCeEEEEEcCCCCcEEEEE----ecCCcEEEEecCCC------ccceeeeccCCCCeEEEEEcCCCCEE
Q psy6213 130 QESTKIFHSNTESVRDVEFNPHSPYAFASV----SENGTIQQWDVRRP------EKCFYQFTAHSGPIFACDWHPEHAWL 199 (330)
Q Consensus 130 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~dg~i~i~d~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l 199 (330)
|+++..++ ...+|..+.|+++|...+++. +..+.|.++|++.. ..+...+..+...++.+-|.|-+++|
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999998 667899999999998533332 23467999999842 35567777788999999999999999
Q ss_pred EEEecCCcEEEEeCCCCcccc-ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEE
Q psy6213 200 ATASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGL 278 (330)
Q Consensus 200 ~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~ 278 (330)
++|..||.|.+||.+++.... ....|...|+.++++|+..+ +++++ .|.+-++||+++... +.++. ...||++.
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~-FiT~s--~Dttakl~D~~tl~v-~Kty~-te~PvN~a 237 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY-FITGS--KDTTAKLVDVRTLEV-LKTYT-TERPVNTA 237 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce-EEecc--cCccceeeeccceee-EEEee-ecccccce
Confidence 999999999999999985544 34567889999999999998 44555 699999999998865 55554 36799999
Q ss_pred EEecCCCEEEEeec
Q psy6213 279 AWRGDPQLFIASSR 292 (330)
Q Consensus 279 ~~~~~~~~l~s~~~ 292 (330)
+++|....++.++.
T Consensus 238 aisP~~d~VilgGG 251 (327)
T KOG0643|consen 238 AISPLLDHVILGGG 251 (327)
T ss_pred ecccccceEEecCC
Confidence 99996666666554
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-28 Score=181.79 Aligned_cols=277 Identities=10% Similarity=0.165 Sum_probs=217.8
Q ss_pred ceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 7 VHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
..|+.|++.|.+++.| +|.|.|||+.+....+.+..|... |++++||+ +|+.|++++.|..|.+||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p-------i~sl~WS~-dgr~LltsS~D~si~lwDl~~- 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP-------ITSLCWSR-DGRKLLTSSRDWSIKLWDLLK- 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccc-------eeEEEecC-CCCEeeeecCCceeEEEeccC-
Confidence 7899999999998888 999999999998766666655443 69999999 999999999999999999988
Q ss_pred CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCC----CCeEEEEEcCCCCcEEEEEe
Q psy6213 85 SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNT----ESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~ 160 (330)
+.+.+.+. ..++|....|+|.+.+.+++.-.+..-.+-++..++....-.... ....+..|.+.|++ +++|.
T Consensus 97 --gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y-IitGt 172 (405)
T KOG1273|consen 97 --GSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY-IITGT 172 (405)
T ss_pred --CCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCE-EEEec
Confidence 56666655 568999999999777777777777777777776532211111111 11233468899995 99999
Q ss_pred cCCcEEEEecCCCccceeeeccCC-CCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc------cccee-----ccccc
Q psy6213 161 ENGTIQQWDVRRPEKCFYQFTAHS-GPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS------LEYSI-----NTIAS 228 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~-----~~~~~ 228 (330)
..|.+.++|..+ .+++..++-.. ..|..+.++..|+.|++-+.|..||.|+++.--. +.... -....
T Consensus 173 sKGkllv~~a~t-~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 173 SKGKLLVYDAET-LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred CcceEEEEecch-heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 999999999998 67777776555 7899999999999999999999999999863211 11000 11234
Q ss_pred eEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCC-CCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 229 VSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK-DVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 229 v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
-.+++|+.+|.|++++.. ....++||.-..+.. +..+.+.. .....+.|+|-...+++- ..|.+++|..
T Consensus 252 Wk~ccfs~dgeYv~a~s~--~aHaLYIWE~~~GsL-VKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSA--RAHALYIWEKSIGSL-VKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred hhheeecCCccEEEeccc--cceeEEEEecCCcce-eeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 567899999999888877 789999999999977 88888777 578899999988888877 7899999964
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=192.56 Aligned_cols=289 Identities=15% Similarity=0.208 Sum_probs=212.8
Q ss_pred CcccceEEEEeeCCCe--eecC--CCeEEEEEcCCcce--eeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcE
Q psy6213 3 YLSPVHKHGLKADNGL--AQPS--RNVFKIFLIKDTEF--VETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAV 76 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~--~~~g--d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 76 (330)
|.++|++++|+|..+. +++| .|.|-+||+.+.+. ...+.++ .+..+|.++.|+|.+...+++.+.||+|
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-----~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-----PHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-----cCCccccceEecCCChhheeeeccCcee
Confidence 6789999999998874 7777 99999999963221 1111111 1233479999999888999999999999
Q ss_pred EEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-eeeeecCCCCeEEEEEcCCCCcE
Q psy6213 77 VVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-TKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
++-|++.. ....+..+......+..+.|+. +...++.+..=|...+||++++.. ...+..|...|++++++|..+++
T Consensus 260 R~~D~~~~-i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 260 RLQDFEGN-ISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeecch-hhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 99999872 1222333333456677888886 566666777667999999998765 56666788899999999999999
Q ss_pred EEEEecCCcEEEEecCCCcc---ceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCC---CCccccceecccc--
Q psy6213 156 FASVSENGTIQQWDVRRPEK---CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS---IKPSLEYSINTIA-- 227 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~-- 227 (330)
+++++.|++.+|||+++-.. ++.....|...|.+..|+|++..|++.+.|..|+|||.. ..-+....+.|..
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT 417 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence 99999999999999986322 234455699999999999988889999999999999984 3323334444432
Q ss_pred ----ceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC-CCCeEEE-EEecCCC-EEEEeecCCeEeeee
Q psy6213 228 ----SVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH-KDVVSGL-AWRGDPQ-LFIASSRVSIIPRAK 300 (330)
Q Consensus 228 ----~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~~v~~~-~~~~~~~-~l~s~~~dg~i~iw~ 300 (330)
.....+|.|+..+ ++.+. .-..|-|+|-+.++. +..+... ...|.++ .|+|-+. +++.++..|.|+||.
T Consensus 418 ~RwlT~fKA~W~P~~~l-i~vg~--~~r~IDv~~~~~~q~-v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNL-IVVGR--YPRPIDVFDGNGGQM-VCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cccccchhheeCCCccE-EEEec--cCcceeEEcCCCCEE-eeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 2456789998885 66665 578899999887765 4443332 2355554 7999777 555556678999986
Q ss_pred cc
Q psy6213 301 NI 302 (330)
Q Consensus 301 ~~ 302 (330)
..
T Consensus 494 ~k 495 (498)
T KOG4328|consen 494 NK 495 (498)
T ss_pred cC
Confidence 43
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=192.06 Aligned_cols=239 Identities=18% Similarity=0.281 Sum_probs=196.2
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
+|.+.|..+++.. +.++++| |.+|+.|.++.. ....+.. ...+..+.-+. .++.+++++. .|.|||
T Consensus 107 AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~-p~~tilg--------~s~~~gIdh~~-~~~~FaTcGe--~i~IWD 173 (433)
T KOG0268|consen 107 AHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP-PLHTILG--------KSVYLGIDHHR-KNSVFATCGE--QIDIWD 173 (433)
T ss_pred cccCceeeEEecc-cceEEecCCcceeeeeccCC-cceeeec--------ccccccccccc-ccccccccCc--eeeecc
Confidence 6999999999997 6679999 999999998863 2222211 22245566555 6788888875 499999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
... ..++..+.--...|.++.|+|.....|++|+.|+.|.+||+++..+++.+. ....-+.++|+|.+ +.|++|+
T Consensus 174 ~~R---~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPea-fnF~~a~ 248 (433)
T KOG0268|consen 174 EQR---DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEA-FNFVAAN 248 (433)
T ss_pred ccc---CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccc-cceeecc
Confidence 877 677788877788999999999888899999999999999999999887765 34456789999955 4699999
Q ss_pred cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc-ceeccccceEEEEEcCCCC
Q psy6213 161 ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 239 (330)
+|..++.||++....++....+|.+.|.+++|+|.|+-+++|+.|.+|+||..+.+.... ....-...|.++.|+.|.+
T Consensus 249 ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 249 EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence 999999999999889999999999999999999999999999999999999998774322 2223356799999999999
Q ss_pred eEEEEeecccCCeEEEEEccCC
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
| +.+|+ +|+.|++|.....
T Consensus 329 y-i~SGS--dd~nvRlWka~As 347 (433)
T KOG0268|consen 329 Y-IISGS--DDGNVRLWKAKAS 347 (433)
T ss_pred E-EEecC--CCcceeeeecchh
Confidence 8 55666 6999999987543
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=197.95 Aligned_cols=286 Identities=16% Similarity=0.247 Sum_probs=206.1
Q ss_pred eEEEEeeCCC--e-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 8 HKHGLKADNG--L-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 8 ~~~~~s~~~~--~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
.+..|++-.+ . |+.+ +|.|.++|....... ..+........+...|.++.|.| ....|++++.|.++++||++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk 130 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-LEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVK 130 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc-hhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeec
Confidence 3456665333 3 6666 999999998875443 00111112233444579999999 99999999999999999999
Q ss_pred CCCCCceeEE--ecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc---------------------------ee
Q psy6213 83 QISRSKQERV--FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE---------------------------ST 133 (330)
Q Consensus 83 ~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------------------~~ 133 (330)
+ .+.... +.+|...+.+++|.|.+...|++|+.||.|.|||++-.. .+
T Consensus 131 ~---s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 131 T---SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred c---ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 8 455544 889999999999999999999999999999999987321 01
Q ss_pred eeeecCCCCeEE---EEEcCCCCcEEEEEec-CCcEEEEecCCCcccee-------eeccC---CCCeEEEEEcCCCCEE
Q psy6213 134 KIFHSNTESVRD---VEFNPHSPYAFASVSE-NGTIQQWDVRRPEKCFY-------QFTAH---SGPIFACDWHPEHAWL 199 (330)
Q Consensus 134 ~~~~~~~~~v~~---~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~-------~~~~~---~~~i~~~~~~~~~~~l 199 (330)
...+.+...|.+ +.+..|.. .|++++. |+.|++||+++...... .+.-| .-.+.++.....|.+|
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 111223334444 44555665 5777776 99999999997532211 11222 3357788888889999
Q ss_pred EEEecCCcEEEEeCCCCcc--ccceecc--ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCe
Q psy6213 200 ATASRDKTIKVWDLSIKPS--LEYSINT--IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275 (330)
Q Consensus 200 ~~~~~dg~i~i~d~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v 275 (330)
++.+.|+.|++||+..... .....++ ...-..-..+|++.+ +++++ .|...++|.+.+.+.+...+.+|...|
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~-l~SgS--sd~~ayiw~vs~~e~~~~~l~Ght~eV 363 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS-LLSGS--SDEQAYIWVVSSPEAPPALLLGHTREV 363 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce-EeccC--CCcceeeeeecCccCChhhhhCcceEE
Confidence 9999999999999987633 1111111 122233457899998 55555 599999999999999899999999999
Q ss_pred EEEEEec-CCCEEEEeecCCeEeeeecc
Q psy6213 276 SGLAWRG-DPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 276 ~~~~~~~-~~~~l~s~~~dg~i~iw~~~ 302 (330)
++++|.| .-.-+++++.|-.+++|...
T Consensus 364 t~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 364 TTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred EEEeeccccCCCceeeccCcceEEEecc
Confidence 9999998 33457778999999999863
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-27 Score=168.66 Aligned_cols=243 Identities=21% Similarity=0.293 Sum_probs=193.9
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCC----------CCC--ceeEEecccccceeEEEEEecCCCEEEEEecCC
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQI----------SRS--KQERVFNDHKRTVNKVSFHYVESNWLISGSQDG 120 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~--~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~ 120 (330)
.|.+++|+| .+.+.++|+...+++|-..... ... -..+.-+.|++.|.|.+|+| .+.++++|+.|+
T Consensus 34 airav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatgsndk 111 (350)
T KOG0641|consen 34 AIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATGSNDK 111 (350)
T ss_pred heeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEecCCCc
Confidence 368999999 9999999999999888643210 001 11233457899999999999 999999999999
Q ss_pred cEEEEEeecCce-----eeeeecCCCCeEEEEEcCC---CCcEEEEEe-cCCcEEEEecCCCccceeeeccCCCCeEEEE
Q psy6213 121 TMRLFDIRCQES-----TKIFHSNTESVRDVEFNPH---SPYAFASVS-ENGTIQQWDVRRPEKCFYQFTAHSGPIFACD 191 (330)
Q Consensus 121 ~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~~~---~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~ 191 (330)
+|++.-++...+ -..+..|.+.|+.++|..+ +..++++++ .|..|++-|..+ ++..+.+.+|.+.|.++
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~-g~~~~a~sghtghilal- 189 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR-GQGFHALSGHTGHILAL- 189 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC-CCcceeecCCcccEEEE-
Confidence 999987764332 3456678999999999654 334566654 466788888887 67788899999999877
Q ss_pred EcCCCCEEEEEecCCcEEEEeCCCCccccceec-------cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc
Q psy6213 192 WHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN-------TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP 264 (330)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~ 264 (330)
++-++-++++|+.|.+|++||++-..++..... ..+.|.+++..|.|+ |++++. .|....+||++.++.
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~--~dssc~lydirg~r~- 265 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGH--ADSSCMLYDIRGGRM- 265 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeecc--CCCceEEEEeeCCce-
Confidence 333688999999999999999998755433222 236799999999999 477777 799999999998876
Q ss_pred ceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 265 LASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 265 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
++.+..|...|.++.|+|...++++|+.|..|++-+...
T Consensus 266 iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 999999999999999999999999999999999976543
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=185.11 Aligned_cols=214 Identities=28% Similarity=0.469 Sum_probs=176.1
Q ss_pred ccccceeeeeecccCCcEEEEEcCCCcEEEEECCC------C---------CCCceeEEecccccceeEEEEEecCCCEE
Q psy6213 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ------I---------SRSKQERVFNDHKRTVNKVSFHYVESNWL 113 (330)
Q Consensus 49 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~---------~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 113 (330)
.+..+|.+.+|+| +|.++|+|+.|..|+|.|++. . .....++++..|..+|+++.|+| ...+|
T Consensus 110 ~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~IL 187 (430)
T KOG0640|consen 110 SHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETIL 187 (430)
T ss_pred ecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhheE
Confidence 3455689999999 999999999999999999872 0 11245678889999999999999 89999
Q ss_pred EEEecCCcEEEEEeecCceeeeee--cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceee---eccCCCCeE
Q psy6213 114 ISGSQDGTMRLFDIRCQESTKIFH--SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ---FTAHSGPIF 188 (330)
Q Consensus 114 ~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~i~ 188 (330)
++|+.|++|++||+......+.++ ....+|.++.|+|.|+ ++++|.+..++++||+++ .++... -..|.+.|+
T Consensus 188 iS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T-~QcfvsanPd~qht~ai~ 265 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNT-YQCFVSANPDDQHTGAIT 265 (430)
T ss_pred EeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccc-eeEeeecCccccccccee
Confidence 999999999999997544333222 2457899999999999 588899999999999998 444332 235889999
Q ss_pred EEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec--cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccce
Q psy6213 189 ACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN--TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA 266 (330)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~ 266 (330)
++.+++.+++.++++.||.|++||--..+++..... ....|.+..|..+++|++.++ .|..+++|.+.+++. +.
T Consensus 266 ~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG---~DS~vkLWEi~t~R~-l~ 341 (430)
T KOG0640|consen 266 QVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG---KDSTVKLWEISTGRM-LK 341 (430)
T ss_pred EEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC---CcceeeeeeecCCce-EE
Confidence 999999999999999999999999888767554433 367899999999999977777 599999999999976 55
Q ss_pred Eeec
Q psy6213 267 SFTE 270 (330)
Q Consensus 267 ~~~~ 270 (330)
.+.+
T Consensus 342 ~YtG 345 (430)
T KOG0640|consen 342 EYTG 345 (430)
T ss_pred EEec
Confidence 5544
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=193.67 Aligned_cols=263 Identities=21% Similarity=0.347 Sum_probs=212.9
Q ss_pred cceEEEEeeCCCeee--cC-CCeEEEEEcCCc--ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 6 PVHKHGLKADNGLAQ--PS-RNVFKIFLIKDT--EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~--~g-d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.++++.|+....+++ .+ |..+++|.-... +....-...... -.|++... ...++++|+..+.|+|||
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~-------~~Cv~~~s-~S~y~~sgG~~~~Vkiwd 107 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDN-------AFCVACAS-QSLYEISGGQSGCVKIWD 107 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccch-------HHHHhhhh-cceeeeccCcCceeeehh
Confidence 388999998876633 33 999999975432 111111111111 14555544 557999999999999999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC-CCCeEEEEEcCCCCcEEEEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN-TESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 159 (330)
+.. ..+.+.+++|+..|+++.++. .+.+||+++..|.|.+..+.++.....+... ...|+-+.|+|..+++|.++
T Consensus 108 l~~---kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~a 183 (673)
T KOG4378|consen 108 LRA---KLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIA 183 (673)
T ss_pred hHH---HHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEee
Confidence 986 677788899999999999996 8899999999999999999998887777754 34567999999999999999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQR 238 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 238 (330)
+.+|.|.+||+........-.+.|..+...++|+| +..+|++.+.|..|.+||.+.. .....+....+.+.++|+++|
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~l~y~~Plstvaf~~~G 262 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDRLTYSHPLSTVAFSECG 262 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cccceeeecCCcceeeecCCc
Confidence 99999999999875544555678999999999999 4568899999999999999976 444445567899999999999
Q ss_pred CeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCC
Q psy6213 239 KFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDP 284 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 284 (330)
.+|+++.+ .|.|..||++..+.|+..+..|...|++++|-|..
T Consensus 263 ~~L~aG~s---~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 263 TYLCAGNS---KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eEEEeecC---CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 98666654 99999999999999999999999999999998754
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-26 Score=187.76 Aligned_cols=263 Identities=11% Similarity=0.091 Sum_probs=189.2
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEE-EEEcCCCcEEEEECCCCCCCceeEEeccc
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHI-ATGATNGAVVVWNLGQISRSKQERVFNDH 96 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 96 (330)
++.+ |+.+++||+.+++....+..+. .+..++|+| +++.+ ++++.++.|++||..+ .+....+..+
T Consensus 5 ~s~~~d~~v~~~d~~t~~~~~~~~~~~--------~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~~~~ 72 (300)
T TIGR03866 5 VSNEKDNTISVIDTATLEVTRTFPVGQ--------RPRGITLSK-DGKLLYVCASDSDTIQVIDLAT---GEVIGTLPSG 72 (300)
T ss_pred EEecCCCEEEEEECCCCceEEEEECCC--------CCCceEECC-CCCEEEEEECCCCeEEEEECCC---CcEEEeccCC
Confidence 4556 9999999999887766554321 136799999 77765 6677889999999987 4555555444
Q ss_pred ccceeEEEEEecCCCEEE-EEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC-cEEEEecCCCc
Q psy6213 97 KRTVNKVSFHYVESNWLI-SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG-TIQQWDVRRPE 174 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg-~i~i~d~~~~~ 174 (330)
. .+..++|+| +++.++ +++.++.+++||+++.+.+..+.. ...+.+++|+|++. +++++..++ .+..||.++ .
T Consensus 73 ~-~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~-~ 147 (300)
T TIGR03866 73 P-DPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKT-Y 147 (300)
T ss_pred C-CccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCC-EEEEEecCCCeEEEEeCCC-C
Confidence 3 356788998 666655 455689999999998877776653 34568899999998 466666654 577889876 3
Q ss_pred cceeeeccCCCCeEEEEEcCCCCEEEEE-ecCCcEEEEeCCCCccccceecc-------ccceEEEEEcCCCCeEEEEee
Q psy6213 175 KCFYQFTAHSGPIFACDWHPEHAWLATA-SRDKTIKVWDLSIKPSLEYSINT-------IASVSRIKWRPQRKFHLASCS 246 (330)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~ 246 (330)
....... ....+..++|+|++++|+++ ..++.+++||+++++.......+ ......++|+|++++++++..
T Consensus 148 ~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 148 EIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred eEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 3333332 23345789999999988655 46899999999987543322111 112456889999998666655
Q ss_pred cccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEe-ecCCeEeeeeccc
Q psy6213 247 LVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIAS-SRVSIIPRAKNIK 303 (330)
Q Consensus 247 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iw~~~~ 303 (330)
.++.+.+||+++.+. .... .+...+.+++|+|+|++|+++ +.+|.|++|+...
T Consensus 227 --~~~~i~v~d~~~~~~-~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 227 --PANRVAVVDAKTYEV-LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred --CCCeEEEEECCCCcE-EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 478899999987764 3333 344579999999999999886 4689999998653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=189.10 Aligned_cols=263 Identities=15% Similarity=0.194 Sum_probs=207.6
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-CCcEEEEECCCCCCCceeEEeccccccee
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-NGAVVVWNLGQISRSKQERVFNDHKRTVN 101 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~i~ 101 (330)
...+.+||+.+|...-.+........ .++..- ++.+++++.. ...+.+|.+... ........-.+++.
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~------~sl~~l--~~~yllsaq~~rp~l~vw~i~k~---~~~~q~~v~Pg~v~ 85 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQA------ASLTAL--NNEYLLSAQLKRPLLHVWEILKK---DQVVQYIVLPGPVH 85 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccc------hhhhhh--chhheeeecccCccccccccCch---hhhhhhccccccee
Confidence 55699999999876665554311100 111111 4466666654 346889998762 22223334568899
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCC--------C
Q psy6213 102 KVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR--------P 173 (330)
Q Consensus 102 ~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~--------~ 173 (330)
+++-+| .|.+++.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.|+. .|++|+.||.|.+|++.. .
T Consensus 86 al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 86 ALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS-HIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred eeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc-EEEecCCCccEEEEEEEeecccccCCC
Confidence 999998 899999988999999999999999999999999999999999999 699999999999998642 2
Q ss_pred ccceeeeccCCCCeEEEEEcCC--CCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCC
Q psy6213 174 EKCFYQFTAHSGPIFACDWHPE--HAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDS 251 (330)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 251 (330)
-.+...+..|.-+|+++...+. ..++++++.|.++++||+..+ .+......+..+.+++.+|-+..++++. .+|
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~fp~si~av~lDpae~~~yiGt---~~G 239 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTITFPSSIKAVALDPAERVVYIGT---EEG 239 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEecCCcceeEEEcccccEEEecC---Ccc
Confidence 3567888999999999988764 468999999999999999998 5555666788999999999999766665 499
Q ss_pred eEEEEEccCCC---------------ccceEeecCCC--CeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 252 SVNVWDIRRPY---------------IPLASFTEHKD--VVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 252 ~i~i~d~~~~~---------------~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.|.+.++.... ..+..+.+|.+ .|++++.+-||.+|++|+.||.++||+..
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 99998875432 11455678888 99999999999999999999999999853
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=183.86 Aligned_cols=279 Identities=15% Similarity=0.243 Sum_probs=215.8
Q ss_pred cccceEEEEeeCCCe--eecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGL--AQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~--~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
++.|..+.|+|.+.. +++|.+.+..|+++.+.+.+....-..... ..|.|++|.+ +++ +++|..+|.|.||+.
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek---k~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK---KFVLCVTFLE-NGD-VITGDSGGNILIWSK 274 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc---eEEEEEEEcC-CCC-EEeecCCceEEEEeC
Confidence 456889999998776 556699999999999877665443332222 2379999998 555 679999999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc------------------------------
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE------------------------------ 131 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------------------------ 131 (330)
.. .+..+....|.+.|.+++... ++ .|++|+.|..|..||-+-.+
T Consensus 275 ~~---~~~~k~~~aH~ggv~~L~~lr-~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN 349 (626)
T KOG2106|consen 275 GT---NRISKQVHAHDGGVFSLCMLR-DG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRN 349 (626)
T ss_pred CC---ceEEeEeeecCCceEEEEEec-Cc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccc
Confidence 77 555566569999999999985 54 56669999999999832100
Q ss_pred ----------eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEE
Q psy6213 132 ----------STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLAT 201 (330)
Q Consensus 132 ----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 201 (330)
......+|......++.+|+.+ ++++++.|+.+++|+ . .++.-+.. -..+..++.|+|.| .++.
T Consensus 350 ~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~-~--~k~~wt~~-~~d~~~~~~fhpsg-~va~ 423 (626)
T KOG2106|consen 350 FILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN-D--HKLEWTKI-IEDPAECADFHPSG-VVAV 423 (626)
T ss_pred eEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc-C--CceeEEEE-ecCceeEeeccCcc-eEEE
Confidence 0011234666778889999988 699999999999999 2 33333332 45788999999999 9999
Q ss_pred EecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEe-ecCCCCeEEEEE
Q psy6213 202 ASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASF-TEHKDVVSGLAW 280 (330)
Q Consensus 202 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~ 280 (330)
|...|...+.|.++. .+.......++++.++|+|+|.+ +|.++ .|+.|++|-+.......... ..+..+|+.+.|
T Consensus 424 Gt~~G~w~V~d~e~~-~lv~~~~d~~~ls~v~ysp~G~~-lAvgs--~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDw 499 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQ-DLVTIHTDNEQLSVVRYSPDGAF-LAVGS--HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDW 499 (626)
T ss_pred eeccceEEEEecccc-eeEEEEecCCceEEEEEcCCCCE-EEEec--CCCeEEEEEECCCCcEEEEeeeecCceeEEeee
Confidence 999999999999985 44444444899999999999997 66666 69999999997665433333 334589999999
Q ss_pred ecCCCEEEEeecCCeEeeeecc
Q psy6213 281 RGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 281 ~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
++|+++|.+-+.|-.|..|+..
T Consensus 500 S~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 500 SSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred cCCCceEEeccCceEEEEEccc
Confidence 9999999999999999999643
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=206.43 Aligned_cols=201 Identities=18% Similarity=0.369 Sum_probs=167.2
Q ss_pred EEec-ccccceeEEEEEecCCCEEEEEecCCcEEEEEeec--------------------------------C-------
Q psy6213 91 RVFN-DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC--------------------------------Q------- 130 (330)
Q Consensus 91 ~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~--------------------------------~------- 130 (330)
+.+. .|++.|.++.|++ +|+|||+||.|+.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eccccccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 3445 8999999999998 999999999999999998754 0
Q ss_pred ---------------------ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEE
Q psy6213 131 ---------------------ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFA 189 (330)
Q Consensus 131 ---------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~ 189 (330)
+++..+.+|.+.|..+.|+.++ +|++++.|.+|++|++.. ..++..|. |..-|+|
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTC 414 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCC-cceeeEEe-cCCeeEE
Confidence 2334566889999999999887 699999999999999997 77888887 9999999
Q ss_pred EEEcC-CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEe
Q psy6213 190 CDWHP-EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASF 268 (330)
Q Consensus 190 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~ 268 (330)
++|+| |.++|++|+-||.+|||++... .+........-|++++|.|+|++.+++. .+|.+++|+....+. ....
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~-~Vv~W~Dl~~lITAvcy~PdGk~avIGt---~~G~C~fY~t~~lk~-~~~~ 489 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDK-KVVDWNDLRDLITAVCYSPDGKGAVIGT---FNGYCRFYDTEGLKL-VSDF 489 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcC-eeEeehhhhhhheeEEeccCCceEEEEE---eccEEEEEEccCCeE-EEee
Confidence 99999 8899999999999999999887 5555555668999999999999855555 599999999987754 2222
Q ss_pred e--cC------CCCeEEEEEec-CCCEEEEeecCCeEeeeec
Q psy6213 269 T--EH------KDVVSGLAWRG-DPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 269 ~--~~------~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~ 301 (330)
. .| ...|+++.|.| +...++..+.|..|||++.
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 1 11 23799999998 4445777899999999986
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=176.97 Aligned_cols=249 Identities=19% Similarity=0.263 Sum_probs=195.3
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcc---eeeeeceeeccccccccceeeeee-cccCCcEEEEEcCCCc
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTE---FVETHNLRVGKNINLNFSCNDVAW-SCIEENHIATGATNGA 75 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~dg~ 75 (330)
.|.+.|..+...--|+. ++|+ |++|+|+....+. ++..+..|. .+|..++| +|.-|++||+++.||.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~-------GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS-------GPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCC-------CCeeEEeecccccCcEeeEeecCce
Confidence 48888888888888888 6666 9999999998754 333333443 44688898 5678999999999999
Q ss_pred EEEEECCCCCCCceeEEecccccceeEEEEEecC-CCEEEEEecCCcEEEEEeecC---ceeeeeecCCCCeEEEEEcCC
Q psy6213 76 VVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE-SNWLISGSQDGTMRLFDIRCQ---ESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~ 151 (330)
|.||.-+++ +.........|+..|++++|.|.+ +-.|++++.||.|.+.+.++. ...+....|.-.|++++|.|.
T Consensus 82 VIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa 160 (299)
T KOG1332|consen 82 VIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA 160 (299)
T ss_pred EEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence 999998773 566667778899999999999843 557889999999999998765 223455678889999999986
Q ss_pred ---C----------CcEEEEEecCCcEEEEecCCCc-cceeeeccCCCCeEEEEEcCCC----CEEEEEecCCcEEEEeC
Q psy6213 152 ---S----------PYAFASVSENGTIQQWDVRRPE-KCFYQFTAHSGPIFACDWHPEH----AWLATASRDKTIKVWDL 213 (330)
Q Consensus 152 ---~----------~~~~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~ 213 (330)
| .+.|++|+.|..|+||+..+.. .....+.+|.+.|+.++|.|.- .+|++++.||++.||-.
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence 3 1349999999999999998742 2334588999999999999953 57999999999999987
Q ss_pred CCCcc---ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 214 SIKPS---LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 214 ~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
+.... ..........+..+.|++.|..|.++++ |+.+.+|.-...
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G---dNkvtlwke~~~ 288 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG---DNKVTLWKENVD 288 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecC---CcEEEEEEeCCC
Confidence 63311 2222235678999999999997666665 999999976543
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=190.23 Aligned_cols=243 Identities=22% Similarity=0.356 Sum_probs=192.9
Q ss_pred CCeeecC--CCeEEEEEcCCcc-eeeeecee-------------eccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 16 NGLAQPS--RNVFKIFLIKDTE-FVETHNLR-------------VGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 16 ~~~~~~g--d~~i~iw~~~~~~-~~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
|+|++.| +..|.|||++--. ....+.+. ......+...|.+++|+....+.||+|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 6787777 9999999986311 11111111 011112344456888988778899999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|+.+ +++..++..|.+.|.++.|+|..+..|++|+.|++|.+.|.+........-...+.|-.++|.|...+.++++
T Consensus 272 D~~~---g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 272 DVDT---GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EcCC---CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 9999 8888899999999999999999999999999999999999985333322222567899999999999889999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCccccce--eccccceEEEEEcC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPSLEYS--INTIASVSRIKWRP 236 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~ 236 (330)
..||+|+-+|+|+.++++.+++.|.++|.++++++. ..++++++.|+.+++|++......... .-.-+...|.++.|
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCC
Confidence 999999999999999999999999999999999985 457899999999999998765331111 11234578889999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
+-.++++.++ ..+.+++||+.+...
T Consensus 429 ~~a~~la~GG--~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 429 DVAFTLAFGG--EKAVLRVWDIFTNSP 453 (463)
T ss_pred CcceEEEecC--ccceEEEeecccChh
Confidence 9888888888 677899999987654
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=191.18 Aligned_cols=244 Identities=17% Similarity=0.232 Sum_probs=202.6
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
.++|.|++-+|+|.++++| .|.+++|.+.+|.++..+..|... |+++.|+- ++.+|++|+.||.|.+|.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~-------ITcL~fs~-dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS-------ITCLKFSD-DGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccc-------eeEEEEeC-CCcEEEecCCCccEEEEEE
Confidence 5789999999999996666 999999999999998877666544 59999998 9999999999999999987
Q ss_pred CC------CCCCceeEEecccccceeEEEEEec-CCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCc
Q psy6213 82 GQ------ISRSKQERVFNDHKRTVNKVSFHYV-ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPY 154 (330)
Q Consensus 82 ~~------~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 154 (330)
.. ....++...+..|.-+|+++...+. -..++++++.|.++++||+..+..+.++. ....+.+++.+|.+.
T Consensus 153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~- 230 (476)
T KOG0646|consen 153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAER- 230 (476)
T ss_pred EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEccccc-
Confidence 43 1235778889999999999998862 24689999999999999999999888876 677899999999998
Q ss_pred EEEEEecCCcEEEEecCCCc---------------cceeeeccCCC--CeEEEEEcCCCCEEEEEecCCcEEEEeCCCCc
Q psy6213 155 AFASVSENGTIQQWDVRRPE---------------KCFYQFTAHSG--PIFACDWHPEHAWLATASRDKTIKVWDLSIKP 217 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 217 (330)
.++.|+.+|.|.+.++.+.. ..+..+.+|.+ .|+|++++-||.+|++|+.||.++|||+.+.+
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 69999999999998875421 23445677888 99999999999999999999999999999987
Q ss_pred cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 218 SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 218 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
.+.......++|+.+.+.|-.+..+..-. ....+-.|++.
T Consensus 311 ~iRtl~~~kgpVtnL~i~~~~~~~~l~~~--~~ps~~~~~lk 350 (476)
T KOG0646|consen 311 CIRTLQTSKGPVTNLQINPLERGIILFEH--KQPSLPNPHLK 350 (476)
T ss_pred HHHHHhhhccccceeEeeccccceecccc--cCccCCchHhh
Confidence 77776667899999999776554444333 45566666654
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=174.70 Aligned_cols=244 Identities=16% Similarity=0.315 Sum_probs=189.7
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCC-CCCCceeEEecccccceeEEEEE-ecCCCEEEEEecCCcEEEEEeecC-
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQ-ISRSKQERVFNDHKRTVNKVSFH-YVESNWLISGSQDGTMRLFDIRCQ- 130 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~i~~i~~~-~~~~~~l~~~~~d~~i~i~d~~~~- 130 (330)
|.++.|.+ .|+++|+++.|++++|||... .+...+....+.|.+.|..+.|. |.-|+.+|+++.|+++.||.-...
T Consensus 16 ihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 16 IHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 69999999 999999999999999999543 34466777888999999999995 445889999999999999975211
Q ss_pred --------ceeeeeecCCCCeEEEEEcCCCC-cEEEEEecCCcEEEEecCCCcc-----ceeeec-------cCCCCeEE
Q psy6213 131 --------ESTKIFHSNTESVRDVEFNPHSP-YAFASVSENGTIQQWDVRRPEK-----CFYQFT-------AHSGPIFA 189 (330)
Q Consensus 131 --------~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~-----~~~~~~-------~~~~~i~~ 189 (330)
....++......|+++.|.|... ..+++++.||.+|||+.-.... ....++ .+..+..|
T Consensus 95 ~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C 174 (361)
T KOG2445|consen 95 EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC 174 (361)
T ss_pred cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE
Confidence 12445566778899999999632 3688999999999998765322 112222 35667889
Q ss_pred EEEcCC---CCEEEEEecC-----CcEEEEeCCCCc----cccceeccccceEEEEEcCCC---CeEEEEeecccCCeEE
Q psy6213 190 CDWHPE---HAWLATASRD-----KTIKVWDLSIKP----SLEYSINTIASVSRIKWRPQR---KFHLASCSLVVDSSVN 254 (330)
Q Consensus 190 ~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~~~~i~ 254 (330)
+.|+|. ..+|+.|+.+ +.+.||...... .......+..+|+.++|.|+- -+++|+++ .|| |+
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--kDg-v~ 251 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--KDG-VR 251 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--cCc-EE
Confidence 999983 4678888866 478899875543 244455788999999999972 34677777 688 99
Q ss_pred EEEccCCC-------------------ccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 255 VWDIRRPY-------------------IPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 255 i~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
||.+.... ..+..+..|.+.|+.+.|+-.|..|++.|.||.|++|+.
T Consensus 252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred EEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 99987311 114556789999999999999999999999999999973
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=191.42 Aligned_cols=283 Identities=18% Similarity=0.264 Sum_probs=220.7
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|++.|.|++..|.|.++++| ||+|+||.+.++.++....+.. .|.+++|+|.....++++..++.+.|.
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~--------~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS--------EIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc--------eeEEEEecCCCCceeEEEEecCceEEe
Confidence 599999999999999998877 9999999999999988776654 279999999333333333333445444
Q ss_pred ECCCCC----------------------------------CCceeEEecccccceeEEEEEecCCCEEEEEecC---CcE
Q psy6213 80 NLGQIS----------------------------------RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD---GTM 122 (330)
Q Consensus 80 ~~~~~~----------------------------------~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---~~i 122 (330)
+..-+. ...-+...-.|...|..+.|+. .|.||++...+ ..|
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSV 548 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceE
Confidence 431110 0011223345788999999997 99999987653 579
Q ss_pred EEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEE
Q psy6213 123 RLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATA 202 (330)
Q Consensus 123 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 202 (330)
.|+++.......-|....+.+.++.|+|...++| +++ ...|++||+.. +..++.+......|.+++.+|.|..|+.+
T Consensus 549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lf-VaT-q~~vRiYdL~k-qelvKkL~tg~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLF-VAT-QRSVRIYDLSK-QELVKKLLTGSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEecccccccCchhhcCCceeEEEecCCCceEE-EEe-ccceEEEehhH-HHHHHHHhcCCeeeeeeeecCCCCeEEEe
Confidence 9999987766666666678899999999999644 444 36799999997 66777777777889999999999999999
Q ss_pred ecCCcEEEEeCCCCcc-ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc-------CC-CccceEeecCCC
Q psy6213 203 SRDKTIKVWDLSIKPS-LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR-------RP-YIPLASFTEHKD 273 (330)
Q Consensus 203 ~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~-------~~-~~~~~~~~~~~~ 273 (330)
+.|+.+..||+.-... ......|...+++++|++.-+ |+++++ .||.+.|+.-. ++ -.|+..+++|..
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~s--dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGS--DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeec--CCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 9999999999986644 455566888999999999988 588888 78999998632 11 135677888876
Q ss_pred C----eEEEEEecCCCEEEEeecCCeEeee
Q psy6213 274 V----VSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 274 ~----v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
. |....|+|...+|++++.||+|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEee
Confidence 5 9999999999999999999999998
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=183.78 Aligned_cols=247 Identities=26% Similarity=0.434 Sum_probs=194.9
Q ss_pred ceeeeeeccc-CCcEEEEEcCCCcEEEEECCCC-------------CCCceeEEecccccceeEEEEEecCCCEEEEEec
Q psy6213 53 SCNDVAWSCI-EENHIATGATNGAVVVWNLGQI-------------SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ 118 (330)
Q Consensus 53 ~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~-------------~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 118 (330)
.++.+.-++. +..+.++=+..|.|.||++... ...+++.++.+|...-..++|+|.....|++|..
T Consensus 153 ~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc 232 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDC 232 (440)
T ss_pred ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCcc
Confidence 3566665552 4456666778899999998531 2356777888999999999999977777999988
Q ss_pred CCcEEEEEeecCcee---eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCC-ccceeeeccCCCCeEEEEEcC
Q psy6213 119 DGTMRLFDIRCQEST---KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP-EKCFYQFTAHSGPIFACDWHP 194 (330)
Q Consensus 119 d~~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~~ 194 (330)
-+.|++|...++.-. ..+.+|+..|-.++|+|..+.+|++++.||.|+|||+|.+ .+.....+.|.+.|+-|.|+.
T Consensus 233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr 312 (440)
T KOG0302|consen 233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR 312 (440)
T ss_pred ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC
Confidence 899999999886532 3355699999999999999889999999999999999985 233444588999999999999
Q ss_pred CCCEEEEEecCCcEEEEeCCCCcc---ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC---------
Q psy6213 195 EHAWLATASRDKTIKVWDLSIKPS---LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY--------- 262 (330)
Q Consensus 195 ~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~--------- 262 (330)
...+|++|+.||+++|||++..+. +..+..|..+|+++.|+|.....+++++ .|.+|.+||+....
T Consensus 313 ~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg--~D~QitiWDlsvE~D~ee~~~~a 390 (440)
T KOG0302|consen 313 REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG--EDNQITIWDLSVEADEEEIDQEA 390 (440)
T ss_pred CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc--CCCcEEEEEeeccCChhhhcccc
Confidence 888999999999999999987633 4566778999999999998777777777 79999999986321
Q ss_pred ------ccceEeecCC--CCeEEEEEecC-CCEEEEeecCCeEeeeecc
Q psy6213 263 ------IPLASFTEHK--DVVSGLAWRGD-PQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 263 ------~~~~~~~~~~--~~v~~~~~~~~-~~~l~s~~~dg~i~iw~~~ 302 (330)
.|.+.+.-|. ..+..+.|+++ ..+|++.+.|| +.||+.+
T Consensus 391 ~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfktI 438 (440)
T KOG0302|consen 391 AEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFKTI 438 (440)
T ss_pred ccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEEec
Confidence 2233444453 46888999994 55788888888 6666543
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-29 Score=193.58 Aligned_cols=239 Identities=18% Similarity=0.253 Sum_probs=199.7
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
...|..+.|-+ +...|++|+.|..|++|+....+ .....++.+..++|+.+.|.+ ++..+++++.|+.+++|++...
T Consensus 175 ~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 175 EGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred ccccceeEEcc-Ccchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccch
Confidence 34468999998 88999999999999999987622 456777888889999999998 8889999999999999999999
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
+...++.+|.+.|+++.|...... +++|+.|.+|++||+.+ ..+.++... ...+..|..+ ...+++|..|+.|++
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k-~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRf 326 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQK-AYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRF 326 (459)
T ss_pred hhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhh-hheeccccc-cccccceEec--ceeeeecccccceEE
Confidence 999999999999999999988764 99999999999999998 555555442 3455666665 567889999999999
Q ss_pred EeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC----CCCeEEEEEecCCCE
Q psy6213 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH----KDVVSGLAWRGDPQL 286 (330)
Q Consensus 211 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~ 286 (330)
||.+... .....+..+.|+++..++++..++++ + .|..+.+.|+++... ...+.+. ....+.+.|||++.+
T Consensus 327 wD~Rs~~-~~~sv~~gg~vtSl~ls~~g~~lLss-s--RDdtl~viDlRt~eI-~~~~sA~g~k~asDwtrvvfSpd~~Y 401 (459)
T KOG0288|consen 327 WDIRSAD-KTRSVPLGGRVTSLDLSMDGLELLSS-S--RDDTLKVIDLRTKEI-RQTFSAEGFKCASDWTRVVFSPDGSY 401 (459)
T ss_pred EeccCCc-eeeEeecCcceeeEeeccCCeEEeee-c--CCCceeeeecccccE-EEEeeccccccccccceeEECCCCce
Confidence 9999884 44455556799999999999986666 4 599999999998865 4444332 234889999999999
Q ss_pred EEEeecCCeEeeeecc
Q psy6213 287 FIASSRVSIIPRAKNI 302 (330)
Q Consensus 287 l~s~~~dg~i~iw~~~ 302 (330)
+++||.||.|+||+..
T Consensus 402 vaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 402 VAAGSADGSVYIWSVF 417 (459)
T ss_pred eeeccCCCcEEEEEcc
Confidence 9999999999999854
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=184.97 Aligned_cols=289 Identities=17% Similarity=0.218 Sum_probs=212.9
Q ss_pred EEEEeeCCCeeecC-----CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecc------cCCcEEEEEcCCCcEE
Q psy6213 9 KHGLKADNGLAQPS-----RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSC------IEENHIATGATNGAVV 77 (330)
Q Consensus 9 ~~~~s~~~~~~~~g-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~l~~~~~dg~i~ 77 (330)
.+..-|+..++.|+ ...+.+|=.+..+ ..+..|..-. +.....|++|.- ..++++|.|+.|..|.
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e--~nlYvHHD~i--lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEE--ENLYVHHDFI--LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCC--cceeEeccee--ccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 34556777775555 2345555444332 1222232211 111126777753 2368999999999999
Q ss_pred EEECCCCCCCceeEE------------------ecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC
Q psy6213 78 VWNLGQISRSKQERV------------------FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN 139 (330)
Q Consensus 78 iw~~~~~~~~~~~~~------------------~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 139 (330)
|||+.-.....+... -.+|+..|..+.|+..-.+.||+|+.|.+|++||+.++++..++..|
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~ 285 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHH 285 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhc
Confidence 999864222111111 23688899999998877889999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCC-CEEEEEecCCcEEEEeCCCC-c
Q psy6213 140 TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIK-P 217 (330)
Q Consensus 140 ~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~ 217 (330)
...|.++.|+|..+..+++|+.|+++.+.|.|.....-..++ -.+.|-.++|.|.. ..+++++.||.++-+|+|.. +
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~ 364 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK 364 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCC
Confidence 999999999999988999999999999999996444434443 45789999999954 56788889999999999988 4
Q ss_pred cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc-cceEeecCCCCeEEEEEecCC-CEEEEeecCCe
Q psy6213 218 SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI-PLASFTEHKDVVSGLAWRGDP-QLFIASSRVSI 295 (330)
Q Consensus 218 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~ 295 (330)
.+.....|..+|.++++++.-+.++++++ .++.+++|++..... .+......-+...|+++.|+- -.++.|+..+.
T Consensus 365 ~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~ 442 (463)
T KOG0270|consen 365 PVWTLKAHDDEISGLSVNIQTPGLLSTAS--TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAV 442 (463)
T ss_pred ceeEEEeccCCcceEEecCCCCcceeecc--ccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccce
Confidence 56667779999999999999999999988 899999999975432 011111112346777888854 46777888888
Q ss_pred Eeeeeccce
Q psy6213 296 IPRAKNIKI 304 (330)
Q Consensus 296 i~iw~~~~~ 304 (330)
+++|+....
T Consensus 443 ~~vwd~~~~ 451 (463)
T KOG0270|consen 443 LRVWDIFTN 451 (463)
T ss_pred EEEeecccC
Confidence 999986543
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-26 Score=188.48 Aligned_cols=279 Identities=15% Similarity=0.223 Sum_probs=222.9
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
.++|.+|||+.+.+.+|.+ +|.|.||++..+=+. ...++.+. +.+|.+++|++ +.+|.+.+.+|.|.-||+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~-~~vi~g~~----drsIE~L~W~e--~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL-EPVIHGPE----DRSIESLAWAE--GGRLFSSGLSGSITEWDL 97 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCcee-eEEEecCC----CCceeeEEEcc--CCeEEeecCCceEEEEec
Confidence 4689999999999998777 999999999875433 23333322 34479999995 777888889999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee--eeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK--IFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
.+ .++...+....+.|++++.+| .+..++.|+.||.++.++...++... .+...++.+.+++|+|++. .++.|
T Consensus 98 ~~---lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i~~G 172 (691)
T KOG2048|consen 98 HT---LKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KIAGG 172 (691)
T ss_pred cc---CceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EEEec
Confidence 98 788888888899999999998 88999999999988888777665432 3344568999999999997 49999
Q ss_pred ecCCcEEEEecCCCcccee------eecc-CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEE
Q psy6213 160 SENGTIQQWDVRRPEKCFY------QFTA-HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRI 232 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~------~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 232 (330)
+.||.|++||..++..... .+.. ...-|.++.|-.++ .|++|..-|+|.+||...+........|...|.++
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLAL 251 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEE
Confidence 9999999999998544320 1111 23347777777554 68999999999999999998888888899999999
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCc---cceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYI---PLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+.++++.+++.++ .|+.|..|...+... .......|...|.+++..++ .|++|+.|..+.+-.
T Consensus 252 av~~~~d~vfsaG---vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 252 AVADNEDRVFSAG---VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred EEcCCCCeEEEcc---CCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 9999999866666 499999888876643 23344578888999999876 899999999998854
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=196.33 Aligned_cols=282 Identities=17% Similarity=0.253 Sum_probs=221.0
Q ss_pred CcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
|.+.|+++.=+|-=..++.| +|+|.|+++..++.+..++...+. |+.++|..+....+++|+..|.+.+||
T Consensus 201 ~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~-------VtslSFrtDG~p~las~~~~G~m~~wD 273 (910)
T KOG1539|consen 201 FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGR-------VTSLSFRTDGNPLLASGRSNGDMAFWD 273 (910)
T ss_pred cccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccc-------eeEEEeccCCCeeEEeccCCceEEEEE
Confidence 56789999988887788888 999999999999988887765444 599999984555778888889999999
Q ss_pred CCCCCCCceeEEe-cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC-----------------------------
Q psy6213 81 LGQISRSKQERVF-NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ----------------------------- 130 (330)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------------- 130 (330)
++. .+..... ..|.+.+....|.| +...+++++.|+.+++|=.+++
T Consensus 274 Le~---kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 274 LEK---KKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred cCC---CeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence 987 3333333 36667777777776 6677777777777666633211
Q ss_pred -------------------------c---------------------ee-------------------------------
Q psy6213 131 -------------------------E---------------------ST------------------------------- 133 (330)
Q Consensus 131 -------------------------~---------------------~~------------------------------- 133 (330)
+ ++
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence 0 00
Q ss_pred -------eeee-----cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeee---ccCCCCeEEEEEcCCCCE
Q psy6213 134 -------KIFH-----SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQF---TAHSGPIFACDWHPEHAW 198 (330)
Q Consensus 134 -------~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~ 198 (330)
..+. .....+++++.++-|+ +.+.|...|.|-+|++++ +.....+ ..|.++|+.++...-++.
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQS-Gi~r~sf~~~~ah~~~V~gla~D~~n~~ 507 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQS-GIHRKSFGDSPAHKGEVTGLAVDGTNRL 507 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEccc-CeeecccccCccccCceeEEEecCCCce
Confidence 0000 0113477888888888 578889999999999998 5555566 579999999999998999
Q ss_pred EEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEE
Q psy6213 199 LATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGL 278 (330)
Q Consensus 199 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~ 278 (330)
+++++.+|.+.+||.... .+.........+..+..+.....+++.+ +|-.|+++|..+.+. ++.+.+|.+.|+++
T Consensus 508 ~vsa~~~Gilkfw~f~~k-~l~~~l~l~~~~~~iv~hr~s~l~a~~~---ddf~I~vvD~~t~kv-vR~f~gh~nritd~ 582 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKK-VLKKSLRLGSSITGIVYHRVSDLLAIAL---DDFSIRVVDVVTRKV-VREFWGHGNRITDM 582 (910)
T ss_pred EEEccCcceEEEEecCCc-ceeeeeccCCCcceeeeeehhhhhhhhc---CceeEEEEEchhhhh-hHHhhccccceeee
Confidence 999999999999999887 4555555677888888888887655555 499999999998876 88999999999999
Q ss_pred EEecCCCEEEEeecCCeEeeeecc
Q psy6213 279 AWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 279 ~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+|||||++|++++.|++|++|+..
T Consensus 583 ~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 583 TFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred EeCCCCcEEEEeecCCcEEEEecc
Confidence 999999999999999999999854
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=214.22 Aligned_cols=290 Identities=20% Similarity=0.328 Sum_probs=221.3
Q ss_pred eEEEEeeCCCe-eecC------------CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcE----EEEE
Q psy6213 8 HKHGLKADNGL-AQPS------------RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENH----IATG 70 (330)
Q Consensus 8 ~~~~~s~~~~~-~~~g------------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~ 70 (330)
-.++|+|++.. +++| +.++.||.++...... .+..-........-+.++|.+ .+.. ||.|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~--dlk~~~s~~s~~rF~kL~W~~-~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS--DLKPVGSLQSSNRFNKLAWGS-YGSHSHGLIAGG 86 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc--cccccccccccccceeeeecc-cCCCccceeecc
Confidence 35789999873 5544 3345666554321111 011111122233348999998 5544 8999
Q ss_pred cCCCcEEEEECCC---CCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee--cCCCCeEE
Q psy6213 71 ATNGAVVVWNLGQ---ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH--SNTESVRD 145 (330)
Q Consensus 71 ~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~ 145 (330)
..||.|.+||... +.....+.+...|++.|..+.|++..+++||+|+.||.|.|||+++.+...... ...+.|.+
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ 166 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC 166 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence 9999999999876 333455667788999999999999888899999999999999998766555442 24578999
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCC--CeEEEEEcCCC-CEEEEEecCC---cEEEEeCCCCccc
Q psy6213 146 VEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSG--PIFACDWHPEH-AWLATASRDK---TIKVWDLSIKPSL 219 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~ 219 (330)
++|+..-.++|++++.+|.+.|||++. .+++..+..+.+ .+..++|+|+. ..+++++.|. .|.+||+|.....
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence 999999999999999999999999998 455655554443 47899999976 4566666554 4999999877554
Q ss_pred c-ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecC-CCEEEEeecCCeEe
Q psy6213 220 E-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGD-PQLFIASSRVSIIP 297 (330)
Q Consensus 220 ~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~ 297 (330)
. ....|...|.++.|++.+..++++++ .|+.|.+|+.++++. +..+......+..+.|+|. ...++.++-||.|.
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~tgEv-l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNTGEV-LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhccc--CCCCeeEecCCCceE-eeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 3 34578999999999999976788887 799999999999876 7788777889999999994 55899999999999
Q ss_pred eeeccce
Q psy6213 298 RAKNIKI 304 (330)
Q Consensus 298 iw~~~~~ 304 (330)
|+.....
T Consensus 323 I~sl~~~ 329 (1049)
T KOG0307|consen 323 IYSLQGT 329 (1049)
T ss_pred eeeeecC
Confidence 9986543
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-29 Score=209.38 Aligned_cols=229 Identities=22% Similarity=0.465 Sum_probs=203.2
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK 134 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 134 (330)
.++..-. ..+.+++|+.|..+-+|.+.. ...+..+.+|..+|.++.|++ ...+|++|+.+|+|++||++..+.++
T Consensus 32 ~~lk~~~-s~r~~~~Gg~~~k~~L~~i~k---p~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vr 106 (825)
T KOG0267|consen 32 GCLKIRK-SSRSLVTGGEDEKVNLWAIGK---PNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVR 106 (825)
T ss_pred ceeeeec-cceeeccCCCceeeccccccC---CchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhhh
Confidence 4454433 778999999999999999877 566667899999999999997 88999999999999999999999999
Q ss_pred eeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCC
Q psy6213 135 IFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214 (330)
Q Consensus 135 ~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 214 (330)
++.+|...+.++.|+|-+.+ ++.|+.|+.+++||.+. ..+.+.+.+|...+..+.|+|+|++++.++.|..++|||+.
T Consensus 107 tLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 107 TLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT 184 (825)
T ss_pred hhhccccCcceeeeccceEE-eccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence 99999999999999999995 79999999999999997 56788899999999999999999999999999999999999
Q ss_pred CCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 215 IKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
.++....+..|...+..+.|+|..- |++.++ .|+++++||+++.+. +.........|.+.+|+|++..+++|..+.
T Consensus 185 agk~~~ef~~~e~~v~sle~hp~e~-Lla~Gs--~d~tv~f~dletfe~-I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 185 AGKLSKEFKSHEGKVQSLEFHPLEV-LLAPGS--SDRTVRFWDLETFEV-ISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccccccccccccccccccccCchhh-hhccCC--CCceeeeeccceeEE-eeccCCccCCceeeeecCCceeeecCchhh
Confidence 9977777778999999999999865 688887 799999999998765 555555578999999999999888876554
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=195.88 Aligned_cols=237 Identities=16% Similarity=0.258 Sum_probs=197.5
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
-+.++|.| +++.|++++.||.|++|+..... .....+..+...|.+++. ..++|++|+.+++|.+|.+..++.-
T Consensus 16 ~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~--e~P~ti~~~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 16 LTLICYDP-DGEFICTCGSDGDIRKWKTNSDE--EEPETIDISGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred eEEEEEcC-CCCEEEEecCCCceEEeecCCcc--cCCchhhccCceeEEEee---cccceEEeeccceEEEeeCCCCCcc
Confidence 38899999 99999999999999999987631 222233337788888885 4569999999999999999988877
Q ss_pred eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeC
Q psy6213 134 KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 134 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 213 (330)
..+....-++++++|+.+|+ .++.|++|-.|++.++.. ......+++|.++|.++.|+|++.+||+.+.||.|++||+
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D-~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccc-cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 67776778999999999999 599999999999999988 5667889999999999999999999999999999999999
Q ss_pred CCCccccceec--------cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee--cCCCCeEEEEEecC
Q psy6213 214 SIKPSLEYSIN--------TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT--EHKDVVSGLAWRGD 283 (330)
Q Consensus 214 ~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~ 283 (330)
.++........ ....+..++|+|++..+++.+. |+.|.+|+..+... ...+. .+...+..++|+|+
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~---d~~Vkvy~r~~we~-~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV---DNTVKVYSRKGWEL-QFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc---CCeEEEEccCCcee-heeecccccccceEEEEEcCC
Confidence 98854322221 1356788999999777777775 99999999988765 34333 34455999999999
Q ss_pred CCEEEEeecCCeEeeeecc
Q psy6213 284 PQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 284 ~~~l~s~~~dg~i~iw~~~ 302 (330)
|++||+++.||.|.||+..
T Consensus 244 G~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWNVD 262 (933)
T ss_pred CcEEeeeccCCcEEEEecc
Confidence 9999999999999999865
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=190.96 Aligned_cols=241 Identities=18% Similarity=0.300 Sum_probs=201.5
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecc--cccceeEEEEEecCCCEEEEEecCCcEEEEEee
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFND--HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~ 128 (330)
..-|.++.++. ..+++++|+. |.|+|||+.......++..+.. ....|.++.+.| +++.|++|+.-.++.|||+.
T Consensus 419 GEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 419 GEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred CcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeecc
Confidence 33467888887 7888999875 6799999988655555555543 356799999998 99999999999999999998
Q ss_pred cCceeee--eecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCC
Q psy6213 129 CQESTKI--FHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDK 206 (330)
Q Consensus 129 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 206 (330)
...+... +....-....++.+||.+ +.+++..||.|.|||+.+ +..++.|++|.+.+.||..+++|..|.+|+-|.
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 6654332 333334577899999998 788889999999999998 788999999999999999999999999999999
Q ss_pred cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCE
Q psy6213 207 TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQL 286 (330)
Q Consensus 207 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 286 (330)
++|.||++.++++. .....+.|.++-.+|++.+++++. +++.+.+......+ .+.+..|+..|.++.|.+-|++
T Consensus 574 tvRcWDlregrqlq-qhdF~SQIfSLg~cP~~dWlavGM---ens~vevlh~skp~--kyqlhlheScVLSlKFa~cGkw 647 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQ-QHDFSSQIFSLGYCPTGDWLAVGM---ENSNVEVLHTSKPE--KYQLHLHESCVLSLKFAYCGKW 647 (705)
T ss_pred ceeehhhhhhhhhh-hhhhhhhheecccCCCccceeeec---ccCcEEEEecCCcc--ceeecccccEEEEEEecccCce
Confidence 99999999985433 344567899999999999966665 58999999888776 4677789999999999999999
Q ss_pred EEEeecCCeEeeeecc
Q psy6213 287 FIASSRVSIIPRAKNI 302 (330)
Q Consensus 287 l~s~~~dg~i~iw~~~ 302 (330)
+++.+.|..+..|+..
T Consensus 648 fvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTP 663 (705)
T ss_pred eeecCchhhhhhccCc
Confidence 9999999999999854
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-26 Score=192.09 Aligned_cols=202 Identities=15% Similarity=0.279 Sum_probs=172.9
Q ss_pred cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee---ecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCc
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF---HSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 174 (330)
..+++++.++ -|++.+.|+..|.|-+|++++|-....+ ..|.++|+.++....++ ++++++.+|.+.+||..+ .
T Consensus 449 ~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~-k 525 (910)
T KOG1539|consen 449 INATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKK-K 525 (910)
T ss_pred cceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCC-c
Confidence 4577888886 8899999999999999999999888888 46999999999998888 799999999999999987 4
Q ss_pred cceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEE
Q psy6213 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVN 254 (330)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~ 254 (330)
.....+. -..++..+..+.....++++..|-.|+++|..+.+......+|...++.++|||||++++.++ .|++|+
T Consensus 526 ~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas---mD~tIr 601 (910)
T KOG1539|consen 526 VLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS---MDSTIR 601 (910)
T ss_pred ceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee---cCCcEE
Confidence 4444444 456788899998888999999999999999999988888889999999999999999966665 599999
Q ss_pred EEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC-CeEeeeeccceeeec
Q psy6213 255 VWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV-SIIPRAKNIKIFIAS 308 (330)
Q Consensus 255 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~iw~~~~~~~~~ 308 (330)
+||+.++.+ +-.+ .-..+..++.|+|+|.+||++..| .-|++|.+...|...
T Consensus 602 ~wDlpt~~l-ID~~-~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~v 654 (910)
T KOG1539|consen 602 TWDLPTGTL-IDGL-LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKSV 654 (910)
T ss_pred EEeccCcce-eeeE-ecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHheec
Confidence 999999875 3333 235788999999999999999999 679999877666544
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-25 Score=180.28 Aligned_cols=278 Identities=16% Similarity=0.211 Sum_probs=214.7
Q ss_pred cccceEEEEeeC--CCe-eecC---CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEE
Q psy6213 4 LSPVHKHGLKAD--NGL-AQPS---RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVV 77 (330)
Q Consensus 4 ~~~v~~~~~s~~--~~~-~~~g---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 77 (330)
...|.|++|++- |.+ ++.. +..+.+||...+....... ..+..|....|+|.+.+++++.+ .|.+.
T Consensus 154 ~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk-------~sne~v~~a~FHPtd~nliit~G-k~H~~ 225 (626)
T KOG2106|consen 154 DRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK-------TSNEVVFLATFHPTDPNLIITCG-KGHLY 225 (626)
T ss_pred cccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce-------eccceEEEEEeccCCCcEEEEeC-CceEE
Confidence 456999999984 444 3333 7789999998876553332 22333688999996777777766 57899
Q ss_pred EEECCCCCCCceeEEeccc-ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEE
Q psy6213 78 VWNLGQISRSKQERVFNDH-KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 156 (330)
+|+++.....+....+..+ +..|.|++|.+ ++ -+++|..+|.|.+|+..+.+..+....|.+.|.++....+|. |
T Consensus 226 Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e-ng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt--l 301 (626)
T KOG2106|consen 226 FWTLRGGSLVKRQGIFEKREKKFVLCVTFLE-NG-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT--L 301 (626)
T ss_pred EEEccCCceEEEeeccccccceEEEEEEEcC-CC-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc--E
Confidence 9999885444444444433 36799999997 44 488999999999999988877777778999999999999996 6
Q ss_pred EEEecCCcEEEEecCCCc---------------------------------------cceeeeccCCCCeEEEEEcCCCC
Q psy6213 157 ASVSENGTIQQWDVRRPE---------------------------------------KCFYQFTAHSGPIFACDWHPEHA 197 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~---------------------------------------~~~~~~~~~~~~i~~~~~~~~~~ 197 (330)
++|+.|..|..||-.-.. .......+|......++.+|+..
T Consensus 302 lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~ 381 (626)
T KOG2106|consen 302 LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN 381 (626)
T ss_pred eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh
Confidence 779999999999832100 00012235777888999999999
Q ss_pred EEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEE
Q psy6213 198 WLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSG 277 (330)
Q Consensus 198 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~ 277 (330)
++++++.|+.+++|+ ..++........+..++.|+|.| . ++.+. ..|...+.|.++... +..... ..+++.
T Consensus 382 q~~T~gqdk~v~lW~---~~k~~wt~~~~d~~~~~~fhpsg-~-va~Gt--~~G~w~V~d~e~~~l-v~~~~d-~~~ls~ 452 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN---DHKLEWTKIIEDPAECADFHPSG-V-VAVGT--ATGRWFVLDTETQDL-VTIHTD-NEQLSV 452 (626)
T ss_pred heeeccCcceEEEcc---CCceeEEEEecCceeEeeccCcc-e-EEEee--ccceEEEEeccccee-EEEEec-CCceEE
Confidence 999999999999999 33556666677899999999999 4 55555 599999999998543 554444 889999
Q ss_pred EEEecCCCEEEEeecCCeEeeeecc
Q psy6213 278 LAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 278 ~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
++|+|+|.+||.|+.|+.|++|...
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEEC
Confidence 9999999999999999999999744
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=198.84 Aligned_cols=247 Identities=19% Similarity=0.346 Sum_probs=194.4
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCcee-EEecc---cccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQE-RVFND---HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~---~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
.+++..++ +...++.++.. .+.+|.+......... ..+.. -.-.+..++|.....++||+++..|.|.+||+..
T Consensus 42 ~nAIs~nr-~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 42 ANAISVNR-DINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cceEeecC-CcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 47778888 77778777754 6888887653222221 11111 1134667888877889999999999999999986
Q ss_pred ---CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEecC
Q psy6213 130 ---QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRD 205 (330)
Q Consensus 130 ---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 205 (330)
.+.+..+..|+..+.++.|++..+++|++|++||+|++||++. .....++.+....|..+.|+| .+..|+++...
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-KKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-ccccccccccchhhhceeeccCCCceEEEecCC
Confidence 4556778889999999999999999999999999999999998 556677777888999999999 57889999999
Q ss_pred CcEEEEeCCCCcc-ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc-cceEeecCCCCeEEEEEecC
Q psy6213 206 KTIKVWDLSIKPS-LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI-PLASFTEHKDVVSGLAWRGD 283 (330)
Q Consensus 206 g~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~ 283 (330)
|.+++||++.... ......|.++|.++.|+|++.+ +|+|+ .|+.|+|||..+++. +..++ ....+|..+.|-|+
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~-lATGG--RDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREW-LATGG--RDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPA 274 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEeecCCCce-eeecC--CCccEEEEeccCCCccceeEE-eecceeeeeeeccC
Confidence 9999999998755 5566679999999999998886 77777 799999999986653 22222 23578999999995
Q ss_pred C-CEEEEeec--CCeEeeeeccceeee
Q psy6213 284 P-QLFIASSR--VSIIPRAKNIKIFIA 307 (330)
Q Consensus 284 ~-~~l~s~~~--dg~i~iw~~~~~~~~ 307 (330)
. ..||+++. |-.|+||+..+.+.+
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred ccchhhhhhccccceEEEEeecccccc
Confidence 4 46777654 778999997655543
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=172.08 Aligned_cols=210 Identities=19% Similarity=0.369 Sum_probs=172.1
Q ss_pred ccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCc---------e---eEEecccccceeEEEEEecCCCEEEEE
Q psy6213 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSK---------Q---ERVFNDHKRTVNKVSFHYVESNWLISG 116 (330)
Q Consensus 49 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---------~---~~~~~~~~~~i~~i~~~~~~~~~l~~~ 116 (330)
.+..+|+++...+..++++++|+.||.|.+||+++....+ + ...-.+|+-.|.++.|.|.+..++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 3445678999988889999999999999999998733111 1 011236788899999999999999999
Q ss_pred ecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCC--cEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC
Q psy6213 117 SQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSP--YAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP 194 (330)
Q Consensus 117 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 194 (330)
+.|.++++||.++.+....|+ .++.|.+-+++|-.. .++++|..+-.|++.|+.. +...+.+.+|.+.|.++.|+|
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEEEEecc
Confidence 999999999999998888887 667899999998542 4788888999999999998 778899999999999999999
Q ss_pred CCCE-EEEEecCCcEEEEeCCCCc-c--------------ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEc
Q psy6213 195 EHAW-LATASRDKTIKVWDLSIKP-S--------------LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258 (330)
Q Consensus 195 ~~~~-l~~~~~dg~i~i~d~~~~~-~--------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~ 258 (330)
...+ |++|+.||.|++||++... + ......|.+.+..++|+.++.+++..+ .|..+++|+.
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g---td~r~r~wn~ 275 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG---TDDRIRVWNM 275 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc---CccceEEeec
Confidence 7765 7899999999999997541 1 122344678899999999999855555 5999999999
Q ss_pred cCCCc
Q psy6213 259 RRPYI 263 (330)
Q Consensus 259 ~~~~~ 263 (330)
.+++.
T Consensus 276 ~~G~n 280 (397)
T KOG4283|consen 276 ESGRN 280 (397)
T ss_pred ccCcc
Confidence 87753
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=181.27 Aligned_cols=257 Identities=14% Similarity=0.109 Sum_probs=184.9
Q ss_pred ccceEEEEeeCCCe-eec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEE-EcCCCcEEEEE
Q psy6213 5 SPVHKHGLKADNGL-AQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIAT-GATNGAVVVWN 80 (330)
Q Consensus 5 ~~v~~~~~s~~~~~-~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~iw~ 80 (330)
..+.+++|+|+|+. +++ + ++.|++||..+++....+..+. .+..++|+| +++.+++ +..++.+++||
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--------~~~~~~~~~-~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP--------DPELFALHP-NGKILYIANEDDNLVTVID 101 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC--------CccEEEECC-CCCEEEEEcCCCCeEEEEE
Confidence 44778999999987 344 4 8999999999887655443221 135688999 7776654 45689999999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC-cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG-TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
+.+ .+.+..+.. ...+.+++|+| ++.+++++..++ .+.+||.++++...... ......+++|+|+++.+++++
T Consensus 102 ~~~---~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 102 IET---RKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred CCC---CeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEc
Confidence 987 455554442 34568899998 888888888765 56778998877665544 234567899999999655666
Q ss_pred ecCCcEEEEecCCCccceeeeccC-------CCCeEEEEEcCCCCEEEE-EecCCcEEEEeCCCCccccceeccccceEE
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAH-------SGPIFACDWHPEHAWLAT-ASRDKTIKVWDLSIKPSLEYSINTIASVSR 231 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 231 (330)
..++.|++||+++ .+....+..+ ......++|+|+++++++ .+.++.+.+||.++++... ...+...+.+
T Consensus 176 ~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~ 253 (300)
T TIGR03866 176 EIGGTVSVIDVAT-RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD-YLLVGQRVWQ 253 (300)
T ss_pred CCCCEEEEEEcCc-ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE-EEEeCCCcce
Confidence 6799999999987 4444433211 112356889999998654 4556789999998774433 2334567899
Q ss_pred EEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 232 IKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
++|+|++++++++.. .++.|.+||+++++. +..+... ...++++++|
T Consensus 254 ~~~~~~g~~l~~~~~--~~~~i~v~d~~~~~~-~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 254 LAFTPDEKYLLTTNG--VSNDVSVIDVAALKV-IKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEECCCCCEEEEEcC--CCCeEEEEECCCCcE-EEEEEcc-cccceeEeCC
Confidence 999999998776655 589999999998875 6666543 5568888765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=189.73 Aligned_cols=232 Identities=22% Similarity=0.353 Sum_probs=197.4
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeE-EEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNK-VSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
|..++.. ++..+++++.||++++|+-.. +.......+.+|.+-|.. +++-+.++..+++|+.|+.+.+|...+..+
T Consensus 17 Vr~v~~~--~~~~i~s~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P 93 (745)
T KOG0301|consen 17 VRAVAVT--DGVCIISGSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP 93 (745)
T ss_pred hheeEec--CCeEEeecCCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCc
Confidence 4566665 466899999999999999765 223344556778887777 888875667799999999999999999999
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEe
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 212 (330)
...+++|+..|++++...++. +++|+.|.++++|-.. ++...+++|...|.++..-|++ .+++|+.|.+|++|.
T Consensus 94 ~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk 167 (745)
T KOG0301|consen 94 LYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWK 167 (745)
T ss_pred hhhhhccccceeeeecCCcCc--eEecccccceEEecch---hhhcccCCcchheeeeeecCCC-cEEeccCcceeeecc
Confidence 999999999999999887774 8999999999999864 4566799999999999999988 789999999999998
Q ss_pred CCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeec
Q psy6213 213 LSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
- ++.+..+.+|...|..+++-+++.+ + +|+ .||.|+.|++. ++. +.++.+|+.-|.+++..+++..++++++
T Consensus 168 ~--~~~l~tf~gHtD~VRgL~vl~~~~f-l-Scs--NDg~Ir~w~~~-ge~-l~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 168 G--GTLLKTFSGHTDCVRGLAVLDDSHF-L-SCS--NDGSIRLWDLD-GEV-LLEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred C--CchhhhhccchhheeeeEEecCCCe-E-eec--CCceEEEEecc-Cce-eeeeeccceEEEEEEecCCCCeEEEecC
Confidence 6 4467777889999999999999873 4 444 59999999994 444 7889999999999998888999999999
Q ss_pred CCeEeeeecc
Q psy6213 293 VSIIPRAKNI 302 (330)
Q Consensus 293 dg~i~iw~~~ 302 (330)
|+++++|+..
T Consensus 240 DrtlriW~~~ 249 (745)
T KOG0301|consen 240 DRTLRIWKKD 249 (745)
T ss_pred CceEEEeecC
Confidence 9999999854
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-26 Score=173.90 Aligned_cols=291 Identities=17% Similarity=0.282 Sum_probs=213.5
Q ss_pred CCCcccceEEEEee----CCCe--eecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc---CCcEEEEEc
Q psy6213 1 MAYLSPVHKHGLKA----DNGL--AQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI---EENHIATGA 71 (330)
Q Consensus 1 ~~H~~~v~~~~~s~----~~~~--~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~ 71 (330)
++|..+|..++|++ +... +++|.+.+.+|+.........++.-..+ ..+.+-..++|+.+ ...++|+|+
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~--d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADE--DHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCC--CCCcceEEEEEEecCCCCCeeEEeec
Confidence 57899999999995 2222 4444889999998765433333222221 22333477788752 245888999
Q ss_pred CCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee---ecCCCCeEEEEE
Q psy6213 72 TNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF---HSNTESVRDVEF 148 (330)
Q Consensus 72 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~ 148 (330)
.-|.|+|.|+.+ .+....+.+|...|+.+.+.|...+++++++.|..|++|++++..++..+ .+|.+.|.++.|
T Consensus 113 ~~GvIrVid~~~---~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 113 YLGVIRVIDVVS---GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ceeEEEEEecch---hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 999999999988 88889999999999999999988899999999999999999999998876 458999999999
Q ss_pred cCCCCcEEEEEecCCcEEEEecCCCcc-----ce----------------e------eeccCCCCeEEEEEcCCCCEEEE
Q psy6213 149 NPHSPYAFASVSENGTIQQWDVRRPEK-----CF----------------Y------QFTAHSGPIFACDWHPEHAWLAT 201 (330)
Q Consensus 149 ~~~~~~~~~~~~~dg~i~i~d~~~~~~-----~~----------------~------~~~~~~~~i~~~~~~~~~~~l~~ 201 (330)
++++. .+++++.|..+++|++..+.- .. . +-.-|...|-|+.|- |.++++
T Consensus 190 ~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilS 266 (385)
T KOG1034|consen 190 SLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILS 266 (385)
T ss_pred cCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheee
Confidence 99999 599999999999999984210 00 0 112355566666665 678999
Q ss_pred EecCCcEEEEeCCCC-ccccceec-------------cccceEEE--EEcCCCCeEEEEeecccCCeEEEEEccCCCccc
Q psy6213 202 ASRDKTIKVWDLSIK-PSLEYSIN-------------TIASVSRI--KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPL 265 (330)
Q Consensus 202 ~~~dg~i~i~d~~~~-~~~~~~~~-------------~~~~v~~~--~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~ 265 (330)
-+-++.|..|..... +......+ ....+.-+ +|.|-++. ++.+. ..|.+.+||++....+.
T Consensus 267 kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~-la~gn--q~g~v~vwdL~~~ep~~ 343 (385)
T KOG1034|consen 267 KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM-LALGN--QSGKVYVWDLDNNEPPK 343 (385)
T ss_pred cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH-Hhhcc--CCCcEEEEECCCCCCcc
Confidence 999999999987322 11111101 12234444 55666776 55555 69999999998776532
Q ss_pred e-Eee--cCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 266 A-SFT--EHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 266 ~-~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
. ++. .....|...+|+.|+.+|+....|++|--|+..
T Consensus 344 ~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 344 CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 2 222 223579999999999999999999999999754
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-28 Score=200.92 Aligned_cols=229 Identities=22% Similarity=0.404 Sum_probs=202.5
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
+|...|.++..-..++.+++| |..+.+|.+........+.+|. .+|.++.|++ ...+|++|+.+|+|++|
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he-------spIeSl~f~~-~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE-------SPIESLTFDT-SERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC-------CcceeeecCc-chhhhcccccCCceeee
Confidence 688889999987777885555 8889999987655444444443 3468999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|++. .+.++++.+|...+.++.|+| -+.+++.|+.|+.+++||.+...+...+.+|...+..+.|+|+|. .++.+
T Consensus 98 Dlee---Ak~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g 172 (825)
T KOG0267|consen 98 DLEE---AKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR-WVASG 172 (825)
T ss_pred ehhh---hhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc-eeecc
Confidence 9998 788889999999999999999 889999999999999999998889999999999999999999999 59999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
++|..+++||+.. ++....|+.|.+.+.++.|+|..-+++.|+.|+++++||+++.+.+....+....|.+.+|+|++.
T Consensus 173 ~ed~tvki~d~~a-gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 173 GEDNTVKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred CCcceeeeecccc-cccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCce
Confidence 9999999999987 778889999999999999999999999999999999999998877777667788999999999998
Q ss_pred eEEEEe
Q psy6213 240 FHLASC 245 (330)
Q Consensus 240 ~l~~~~ 245 (330)
. +.++
T Consensus 252 ~-~~~G 256 (825)
T KOG0267|consen 252 I-VLSG 256 (825)
T ss_pred e-eecC
Confidence 6 4444
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-25 Score=180.98 Aligned_cols=239 Identities=18% Similarity=0.303 Sum_probs=198.1
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEeccc-ccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDH-KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
..|.++||+. ..+.||.+-.+|.|.+|++... .-+...+.++ ...|.+++|.+ +..|++.+.+|.|.-||+.+.
T Consensus 26 s~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~--w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 26 SEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNN--WFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred cceEEEEEec-cCCceeeeccCCcEEEEccCCC--ceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEEecccC
Confidence 3479999998 8888999999999999999873 4444555544 46899999994 677888889999999999999
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccce--eeeccCCCCeEEEEEcCCCCEEEEEecCCcE
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF--YQFTAHSGPIFACDWHPEHAWLATASRDKTI 208 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 208 (330)
++...+....+.|.+++.+|.+. .++.|++||.+..++... +... ..+...++.+.+++|+|++..+++|+.||.|
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p-~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGP-DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI 178 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCC-ceEEEEeecccccceEEEEEecCCccEEEecccCceE
Confidence 99999999999999999999998 699999999777777765 3322 2344456899999999999999999999999
Q ss_pred EEEeCCCCccccce-------e-ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEE
Q psy6213 209 KVWDLSIKPSLEYS-------I-NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAW 280 (330)
Q Consensus 209 ~i~d~~~~~~~~~~-------~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 280 (330)
++||...+...... . ....-|.++.|-.++. ++++. ..|.|.+||...+.+ ++....|.+.|.+++.
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t--I~sgD--S~G~V~FWd~~~gTL-iqS~~~h~adVl~Lav 253 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST--IASGD--SAGTVTFWDSIFGTL-IQSHSCHDADVLALAV 253 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc--EEEec--CCceEEEEcccCcch-hhhhhhhhcceeEEEE
Confidence 99999988654311 1 1234578888887774 55555 599999999999877 8889999999999999
Q ss_pred ecCCCEEEEeecCCeEeeeecc
Q psy6213 281 RGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 281 ~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+++.++++++.|+.|..++..
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred cCCCCeEEEccCCCceEEEEec
Confidence 9999999999999999888644
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=166.06 Aligned_cols=253 Identities=19% Similarity=0.346 Sum_probs=198.1
Q ss_pred CCCcccceEEEEeeCC--Ce---eecCCCeEEEEEcCC--cceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC
Q psy6213 1 MAYLSPVHKHGLKADN--GL---AQPSRNVFKIFLIKD--TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN 73 (330)
Q Consensus 1 ~~H~~~v~~~~~s~~~--~~---~~~gd~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 73 (330)
++|.=+++.+.|.|+. .+ +++.+..+|+|.+.. .+......+..........++++..|+..+.+++.+.+-|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 4688899999999987 34 555588999999884 3333333334444445556789999998889999999999
Q ss_pred CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee-ec--CCCCeEEEEEcC
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF-HS--NTESVRDVEFNP 150 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~--~~~~v~~~~~~~ 150 (330)
-+..|||++.+..+.....+-.|..+|..++|...+.+.|++.+.||.+++||++..+.-..+ +. ...+...++|++
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 999999999843344566778899999999999766788999999999999999977654333 22 245788999999
Q ss_pred CCCcEEEEEec-CCcEEEEecCCCccceeeeccCCCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCcc-----cccee
Q psy6213 151 HSPYAFASVSE-NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPS-----LEYSI 223 (330)
Q Consensus 151 ~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~ 223 (330)
+..+++++-.. ...|.+.|++.+..++..+++|.+.|+.++|.|. ...|++++.|..+.+||+..... .....
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay 332 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY 332 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh
Confidence 98877776544 4569999999999999999999999999999994 57899999999999999987633 22222
Q ss_pred ccccceEEEEEcCCCCeEEEEeecccCCeEEEE
Q psy6213 224 NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW 256 (330)
Q Consensus 224 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~ 256 (330)
...+.|..+.|++...--++.+. ++.+.+.
T Consensus 333 ~a~~EVNqi~Ws~~~~Dwiai~~---~kkleiL 362 (364)
T KOG0290|consen 333 TAGGEVNQIQWSSSQPDWIAICF---GKKLEIL 362 (364)
T ss_pred hccceeeeeeecccCCCEEEEEe---cCeeeEE
Confidence 35688999999977655577775 6666553
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-26 Score=185.56 Aligned_cols=115 Identities=20% Similarity=0.390 Sum_probs=99.8
Q ss_pred CeEEEEEcC-CCCEEEEEecCCcEEEEeCCCCcc-------ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEE
Q psy6213 186 PIFACDWHP-EHAWLATASRDKTIKVWDLSIKPS-------LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257 (330)
Q Consensus 186 ~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d 257 (330)
.|+.+.|.| |...|++++.||.|++|.+..+.. ......|...|+.+.|+|-...++++++ .|.+|++||
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as--yd~Ti~lWD 706 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS--YDSTIELWD 706 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh--ccceeeeee
Confidence 478888998 778899999999999999876522 3334457889999999998777888888 799999999
Q ss_pred ccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 258 IRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 258 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
+.+... ...+.+|.+.|.+++|+|||+.+|+.+.||+|++|++.+
T Consensus 707 l~~~~~-~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 707 LANAKL-YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred hhhhhh-hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 999876 778999999999999999999999999999999998653
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=170.69 Aligned_cols=239 Identities=19% Similarity=0.308 Sum_probs=206.5
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee----
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR---- 128 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~---- 128 (330)
.|..++-.. ....+.+++.|.+-+||.+++ +.++..+.+|.+.|++++|++ .+.++++++.|++..||...
T Consensus 150 GiW~Vaa~~-tqpi~gtASADhTA~iWs~Es---g~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 150 GIWHVAADS-TQPICGTASADHTARIWSLES---GACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred ceeeehhhc-CCcceeecccccceeEEeecc---ccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCc
Confidence 356666665 667899999999999999999 899999999999999999998 89999999999999999521
Q ss_pred --c----------------------------------CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCC
Q psy6213 129 --C----------------------------------QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR 172 (330)
Q Consensus 129 --~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 172 (330)
. ..++..+.+|...|.+..|...++ .+++++.|.+..+||+++
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVET 303 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeecc
Confidence 0 023456778889999999999998 599999999999999999
Q ss_pred CccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCc-cccceeccccceEEEEEcCCCCeEEEEeecccCC
Q psy6213 173 PEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKP-SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDS 251 (330)
Q Consensus 173 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 251 (330)
+.++..+.+|....+.++-+|..+++++++.|.+.++||++..- .+..+.+|...|+++.|.-+.+ +++++ +|.
T Consensus 304 -ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgS--DDr 378 (481)
T KOG0300|consen 304 -GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGS--DDR 378 (481)
T ss_pred -CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecC--CCc
Confidence 78899999999999999999999999999999999999998542 2556778899999999998876 55666 699
Q ss_pred eEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 252 SVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 252 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
+|++||+++...++.++.. ..+++.++.+..+..|+.--.+..|++|+...
T Consensus 379 TvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred eEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 9999999999888888865 56899999998888888888888999998653
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-27 Score=202.74 Aligned_cols=251 Identities=16% Similarity=0.274 Sum_probs=203.0
Q ss_pred ccceEEEEeeCCCe----eecC--CCeEEEEEcCCc---ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCc
Q psy6213 5 SPVHKHGLKADNGL----AQPS--RNVFKIFLIKDT---EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA 75 (330)
Q Consensus 5 ~~v~~~~~s~~~~~----~~~g--d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 75 (330)
.+-+.++|.+.|.. +++| ||.|.+||...- ..... ......+..+|..+.|++..+++||+|+.||.
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----LATKSKHTGPVLGLDFNPFQGNLLASGADDGE 140 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----HhhhcccCCceeeeeccccCCceeeccCCCCc
Confidence 45678999998776 6666 999999998762 11111 12223345567899999977789999999999
Q ss_pred EEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCC--CeEEEEEcCCCC
Q psy6213 76 VVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTE--SVRDVEFNPHSP 153 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~ 153 (330)
|.|||+.+.+...... -....+.|.+++|+....+.|++++.+|.+.|||++..+++..+..+.. .+..++|+|+..
T Consensus 141 I~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred EEEeccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence 9999998732211111 1234678999999987888999999999999999998888777765443 477899999988
Q ss_pred cEEEEEecCC---cEEEEecCCCccceeeeccCCCCeEEEEEcCCC-CEEEEEecCCcEEEEeCCCCccccceeccccce
Q psy6213 154 YAFASVSENG---TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIKPSLEYSINTIASV 229 (330)
Q Consensus 154 ~~~~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 229 (330)
..++++++|. .|.+||+|....+.+.++.|...|.++.|++.+ .++++++.|+.|.+|+.++++.+.........+
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~ 299 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWC 299 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcce
Confidence 7788877664 499999998888999999999999999999965 899999999999999999997776666677899
Q ss_pred EEEEEcCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
..+.|.|....+++..+ .||.|.||.+....
T Consensus 300 fdv~w~pr~P~~~A~as--fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 300 FDVQWCPRNPSVMAAAS--FDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeecCCCcchhhhhe--eccceeeeeeecCC
Confidence 99999999998888888 89999999997654
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=175.74 Aligned_cols=247 Identities=23% Similarity=0.335 Sum_probs=195.9
Q ss_pred ccceeeeeecccCC-cEEEEEcCCCcEEEEECCC-CCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee
Q psy6213 51 NFSCNDVAWSCIEE-NHIATGATNGAVVVWNLGQ-ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 51 ~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~ 128 (330)
...|++++|+|... +++|+|...|.|-+||+.. .........+..|..+|.++.|+|.+...+++.+.||+|++-|++
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 44579999999544 6889999999999999953 222344566778999999999999999999999999999999998
Q ss_pred cCceeeeeec--CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC-CCEEEEEecC
Q psy6213 129 CQESTKIFHS--NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLATASRD 205 (330)
Q Consensus 129 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 205 (330)
+......+.. ....+.++.|+.+... ++.+..=|...+||+++++.....+.-|...|.+++++|. ..+|++++.|
T Consensus 266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D 344 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD 344 (498)
T ss_pred chhhHHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence 7654333333 4556788889888884 6677777799999999988778888889999999999995 4578999999
Q ss_pred CcEEEEeCCCCcc----ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc---CCCccceEeecCCC-----
Q psy6213 206 KTIKVWDLSIKPS----LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR---RPYIPLASFTEHKD----- 273 (330)
Q Consensus 206 g~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~---~~~~~~~~~~~~~~----- 273 (330)
++.+|||++.... ......|...|.++.|||.+-.|+.++. |..|+|||.. ....+..++. |..
T Consensus 345 ~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~---D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~Rw 420 (498)
T KOG4328|consen 345 QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ---DNEIRVFDSSCISAKDEPLGTIP-HNNRTGRW 420 (498)
T ss_pred cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc---CCceEEeecccccccCCccceee-ccCccccc
Confidence 9999999987633 3456678899999999999988777774 9999999984 2223333332 221
Q ss_pred -CeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 274 -VVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 274 -~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.....+|.|+..++++|-.-..|-|++..
T Consensus 421 lT~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 421 LTPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred ccchhheeCCCccEEEEeccCcceeEEcCC
Confidence 23456899999999999988889888744
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-25 Score=166.42 Aligned_cols=238 Identities=15% Similarity=0.217 Sum_probs=183.9
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK 134 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 134 (330)
.|+.|++ .|.+||+|+.||.|.|||+.+ ...-+.+.+|..+|++++|++ +++.|++++.|..|.+||+..|.+++
T Consensus 27 ~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T---~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 27 ECCQFSR-WGDYLAVGCANGRVVIYDFDT---FRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred ceEEecc-CcceeeeeccCCcEEEEEccc---cchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCcee
Confidence 8999999 999999999999999999998 667778899999999999998 99999999999999999999999998
Q ss_pred eeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc---CCCCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 135 IFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA---HSGPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 135 ~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
.+. ..++|..+.|+|...+.+++.-.+..-.+-++..+......... ......+..|.+.|+++++|...|.+.++
T Consensus 102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 888 77899999999988776666655555566666542211111111 11122334688999999999999999999
Q ss_pred eCCCCccccceecc-ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC------c--cceEeec--CCCCeEEEEE
Q psy6213 212 DLSIKPSLEYSINT-IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY------I--PLASFTE--HKDVVSGLAW 280 (330)
Q Consensus 212 d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~------~--~~~~~~~--~~~~v~~~~~ 280 (330)
|..+.+......-. ...|..+.++..|++++.-++ |..||.|+++.-. . +.+.++. ....-.+++|
T Consensus 181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts---DRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf 257 (405)
T KOG1273|consen 181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS---DRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF 257 (405)
T ss_pred ecchheeeeeeeechheeeeEEEEeccCcEEEEecC---CceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence 99998665544444 378999999999999777776 9999999987321 1 0111110 1123467889
Q ss_pred ecCCCEEEEeec-CCeEeeeec
Q psy6213 281 RGDPQLFIASSR-VSIIPRAKN 301 (330)
Q Consensus 281 ~~~~~~l~s~~~-dg~i~iw~~ 301 (330)
+.+|.++++++. -..++||+.
T Consensus 258 s~dgeYv~a~s~~aHaLYIWE~ 279 (405)
T KOG1273|consen 258 SGDGEYVCAGSARAHALYIWEK 279 (405)
T ss_pred cCCccEEEeccccceeEEEEec
Confidence 999999988774 357999974
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=186.18 Aligned_cols=242 Identities=15% Similarity=0.263 Sum_probs=199.5
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecc--cCCcEEEEEcCCCcEEEE
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSC--IEENHIATGATNGAVVVW 79 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iw 79 (330)
...+++++.+|+|++|++| .|+++||++..-+.....+.|..+ |.|+.|+. ...++||+++.|..|.+|
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE-------ilcLeyS~p~~~~kLLASasrdRlIHV~ 531 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE-------ILCLEYSFPVLTNKLLASASRDRLIHVY 531 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccce-------eEEEeecCchhhhHhhhhccCCceEEEE
Confidence 4568999999999999999 899999999987777666666555 47777764 235789999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCC--CEEEEEecCCcEEEEEeecCceeeeee-----cCCCCeEEEEEcCCC
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVES--NWLISGSQDGTMRLFDIRCQESTKIFH-----SNTESVRDVEFNPHS 152 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~ 152 (330)
|.... ...++++.+|...|++++|.. .+ ..+++++.|+.|++--.+.......+. .....++.++..|..
T Consensus 532 Dv~rn--y~l~qtld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~ 608 (1080)
T KOG1408|consen 532 DVKRN--YDLVQTLDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS 608 (1080)
T ss_pred ecccc--cchhhhhcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc
Confidence 99763 677888999999999999986 44 678999999877643322111111111 123568999999999
Q ss_pred CcEEEEEecCCcEEEEecCCCccceeeecc---CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccce
Q psy6213 153 PYAFASVSENGTIQQWDVRRPEKCFYQFTA---HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASV 229 (330)
Q Consensus 153 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 229 (330)
+ ++++++.|..|+|||+.+ ++..+.|++ |.+....+...|.|.|+++.+.|+++.++|..+++++....+|...|
T Consensus 609 k-~v~t~cQDrnirif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 609 K-LVVTVCQDRNIRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAV 686 (1080)
T ss_pred c-eEEEEecccceEEEeccc-cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhe
Confidence 9 599999999999999998 666777764 66778889999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
+.+.|.+|.+.|+...+ ||.|.+|.+..
T Consensus 687 TG~kF~nDCkHlISvsg---DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSG---DGCIFVWKLPL 714 (1080)
T ss_pred eeeeecccchhheeecC---CceEEEEECch
Confidence 99999999999776665 99999999853
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-25 Score=181.63 Aligned_cols=292 Identities=17% Similarity=0.264 Sum_probs=223.5
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|..++|.|.|.+ +++| |.+-|+|-.-. +...- .......-+.+..+|++|-+ ....+++|..+..+++|
T Consensus 359 GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg-~q~~w--HEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF 434 (764)
T KOG1063|consen 359 GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG-RQQEW--HEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVF 434 (764)
T ss_pred cccccceeeeecCCCCEEEEeccccceeeecccc-cccce--eeecccccccccceeeehcc-CCceeeecccceeeeee
Confidence 58999999999999999 8899 99999997652 21111 11123334455679999987 68888999888889999
Q ss_pred ECCCC-------------------------------------------CC------------------------------
Q psy6213 80 NLGQI-------------------------------------------SR------------------------------ 86 (330)
Q Consensus 80 ~~~~~-------------------------------------------~~------------------------------ 86 (330)
+.... ..
T Consensus 435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL 514 (764)
T KOG1063|consen 435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL 514 (764)
T ss_pred cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence 86110 00
Q ss_pred CceeEEecccccceeEEEEEecCCCEEEEEecCC-----cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec
Q psy6213 87 SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG-----TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 87 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
...+..+.+|.-.|.+++.+| +++++|+++... .|++|+..+......+..|.-.|+.++|+|++++ |++++.
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~-LLsvsR 592 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRY-LLSVSR 592 (764)
T ss_pred chhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcE-EEEeec
Confidence 011123457888999999998 999999998653 5999999998888899999999999999999995 889999
Q ss_pred CCcEEEEecCCCcccee---eeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC--cccc--ceeccccceEEEEE
Q psy6213 162 NGTIQQWDVRRPEKCFY---QFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK--PSLE--YSINTIASVSRIKW 234 (330)
Q Consensus 162 dg~i~i~d~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~--~~~~~~~~v~~~~~ 234 (330)
|.++.+|.......... ..+.|..-|.+..|+|++.+|+|++.|+++++|..... +.+. ....+...|+.+++
T Consensus 593 DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~ 672 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAY 672 (764)
T ss_pred CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEe
Confidence 99999999865433333 36789999999999999999999999999999998776 2222 34456788999998
Q ss_pred cCC----CCeEEEEeecccCCeEEEEEccCCCc-----------cceEeecCCCCeEEEEEecC----------CCEEEE
Q psy6213 235 RPQ----RKFHLASCSLVVDSSVNVWDIRRPYI-----------PLASFTEHKDVVSGLAWRGD----------PQLFIA 289 (330)
Q Consensus 235 ~~~----~~~l~~~~~~~~~~~i~i~d~~~~~~-----------~~~~~~~~~~~v~~~~~~~~----------~~~l~s 289 (330)
.|- ..++++.+- +.|.|.+|....... ......+|...|+.+.|.|- ...|++
T Consensus 673 ~~~~~~e~~~~vavGl--e~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~ 750 (764)
T KOG1063|consen 673 LPVDHNEKGDVVAVGL--EKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAV 750 (764)
T ss_pred eccccccccceEEEEe--cccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEee
Confidence 774 334677777 799999999652111 01222356778999999973 335799
Q ss_pred eecCCeEeeeec
Q psy6213 290 SSRVSIIPRAKN 301 (330)
Q Consensus 290 ~~~dg~i~iw~~ 301 (330)
|+.|..+++++.
T Consensus 751 ~g~D~~vri~nv 762 (764)
T KOG1063|consen 751 GGDDESVRIFNV 762 (764)
T ss_pred ecccceeEEeec
Confidence 999999999864
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=162.52 Aligned_cols=251 Identities=18% Similarity=0.257 Sum_probs=183.8
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeec-ccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWS-CIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~i 78 (330)
.|.+-|+++.|.+-|+. ++|+ |++++|||.+...-.- ... .....+..+|..+.|. |.-|+.+|+++.|+++.|
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W--~~T-s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW--SCT-SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce--EEe-eeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 48888999999999999 5555 9999999975432111 111 1223344557899995 566899999999999999
Q ss_pred EECCCC------CCCceeEEecccccceeEEEEEecC-CCEEEEEecCCcEEEEEeecC------ceeeeee-------c
Q psy6213 79 WNLGQI------SRSKQERVFNDHKRTVNKVSFHYVE-SNWLISGSQDGTMRLFDIRCQ------ESTKIFH-------S 138 (330)
Q Consensus 79 w~~~~~------~~~~~~~~~~~~~~~i~~i~~~~~~-~~~l~~~~~d~~i~i~d~~~~------~~~~~~~-------~ 138 (330)
|.-... .+.....++......|++++|.|.. |-.+++++.||.++||+.... .....++ .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 986321 1234455677788999999999833 557899999999999986533 2222232 3
Q ss_pred CCCCeEEEEEcCCC--CcEEEEEecC-----CcEEEEecCCCcc---ceeeeccCCCCeEEEEEcCC----CCEEEEEec
Q psy6213 139 NTESVRDVEFNPHS--PYAFASVSEN-----GTIQQWDVRRPEK---CFYQFTAHSGPIFACDWHPE----HAWLATASR 204 (330)
Q Consensus 139 ~~~~v~~~~~~~~~--~~~~~~~~~d-----g~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~ 204 (330)
+..+..|+.|+|.. +.+|+.|+.+ +.++||......+ .+..+.+|..+|+.++|.|+ -.+||+++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 55678899999752 2367777765 4789998776442 34567789999999999995 357999999
Q ss_pred CCcEEEEeCCCCc--------------------cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 205 DKTIKVWDLSIKP--------------------SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 205 dg~i~i~d~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
|| |+||.++... .+.....|.+.|..+.|+-.|.. +++.+ .||.+++|...
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGti-LsStG--dDG~VRLWkan 318 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTI-LSSTG--DDGCVRLWKAN 318 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeE-EeecC--CCceeeehhhh
Confidence 99 9999987421 12234457889999999999986 55555 69999999764
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=160.64 Aligned_cols=276 Identities=21% Similarity=0.405 Sum_probs=205.2
Q ss_pred cceEEEEe--eCCCe-eecC------CCeEEEEEcCC--cceeeeeceeeccccccccceeeeeecccCC-----cEEEE
Q psy6213 6 PVHKHGLK--ADNGL-AQPS------RNVFKIFLIKD--TEFVETHNLRVGKNINLNFSCNDVAWSCIEE-----NHIAT 69 (330)
Q Consensus 6 ~v~~~~~s--~~~~~-~~~g------d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~l~~ 69 (330)
+++++.|+ |+.++ ++.| .+.|.|-.++. ++... .....+.++++.+-|.| +. ++||+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~------~a~fd~~YP~tK~~wiP-d~~g~~pdlLAT 118 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVE------DANFDHPYPVTKLMWIP-DSKGVYPDLLAT 118 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceec------cCCCCCCCCccceEecC-CccccCcchhhc
Confidence 46788888 45555 6665 67888877664 33332 22356778899999999 43 45665
Q ss_pred EcCCCcEEEEECCCCCC-CceeEEe-----cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce---eeeeecCC
Q psy6213 70 GATNGAVVVWNLGQISR-SKQERVF-----NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES---TKIFHSNT 140 (330)
Q Consensus 70 ~~~dg~i~iw~~~~~~~-~~~~~~~-----~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~ 140 (330)
.+ ..+++|.+...+. ..+...+ ..+..+++++.|+..+.+++.+++-|-+..+||++++.. ...+-.|.
T Consensus 119 s~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD 196 (364)
T KOG0290|consen 119 SS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD 196 (364)
T ss_pred cc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecC
Confidence 44 4799999875221 1121122 245678999999988999999999999999999998743 45566799
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc--CCCCeEEEEEcCC-CCEEEEEecC-CcEEEEeCCCC
Q psy6213 141 ESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA--HSGPIFACDWHPE-HAWLATASRD-KTIKVWDLSIK 216 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~-~~~l~~~~~d-g~i~i~d~~~~ 216 (330)
.+|..++|...+..+|++.+.||.+|+||++........++. ...+...++|+++ -+++|+-..| ..|.|.|++..
T Consensus 197 KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P 276 (364)
T KOG0290|consen 197 KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP 276 (364)
T ss_pred cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC
Confidence 999999999988889999999999999999975444333333 2467888999984 4677776655 45999999987
Q ss_pred cc-ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc-----cceEeecCCCCeEEEEEec-CCCEEEE
Q psy6213 217 PS-LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI-----PLASFTEHKDVVSGLAWRG-DPQLFIA 289 (330)
Q Consensus 217 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~s 289 (330)
.. +.....|.+.|+.++|.|.....+++++ +|....+||+..... |+.... ..+.|+.+.|++ .+..++.
T Consensus 277 ~tpva~L~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 277 CTPVARLRNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred CcceehhhcCcccccceEecCCCCceeeecC--CcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEE
Confidence 44 5567789999999999999888888888 899999999975432 233333 457899999997 6667777
Q ss_pred eecC
Q psy6213 290 SSRV 293 (330)
Q Consensus 290 ~~~d 293 (330)
+...
T Consensus 354 ~~~k 357 (364)
T KOG0290|consen 354 CFGK 357 (364)
T ss_pred EecC
Confidence 6543
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-25 Score=179.83 Aligned_cols=242 Identities=22% Similarity=0.303 Sum_probs=183.0
Q ss_pred eeecc--cCCcEEEEEcCCCcEEEEECCCCCC---CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc
Q psy6213 57 VAWSC--IEENHIATGATNGAVVVWNLGQISR---SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE 131 (330)
Q Consensus 57 ~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 131 (330)
..|++ .....|+.+.+||.|.++|...... .........|...|..+.|-| ....|++++.|.++++||+++.+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccce
Confidence 45543 3567899999999999999876221 122345668999999999999 88999999999999999999998
Q ss_pred eeee--eecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc-------------------c-------eeeeccC
Q psy6213 132 STKI--FHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK-------------------C-------FYQFTAH 183 (330)
Q Consensus 132 ~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-------------------~-------~~~~~~~ 183 (330)
.... +.+|...+.+++|.|.++.+|++|+.||.|.|||++-... + +...+.+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8776 8899999999999999999999999999999999975320 0 0111223
Q ss_pred CCCeEE---EEEcCCCCEEEEEec-CCcEEEEeCCCCcccccee--------cc---ccceEEEEEcCCCCeEEEEeecc
Q psy6213 184 SGPIFA---CDWHPEHAWLATASR-DKTIKVWDLSIKPSLEYSI--------NT---IASVSRIKWRPQRKFHLASCSLV 248 (330)
Q Consensus 184 ~~~i~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~--------~~---~~~v~~~~~~~~~~~l~~~~~~~ 248 (330)
...|.+ +.+..|...|++++. |+.|++||++......... .+ ...+.++.....|.+|+|+|.
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-- 291 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-- 291 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec--
Confidence 344444 455568888998887 9999999998774321111 11 345788888888999999997
Q ss_pred cCCeEEEEEccCCCc-cceEeecCCCC--eEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 249 VDSSVNVWDIRRPYI-PLASFTEHKDV--VSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 249 ~~~~i~i~d~~~~~~-~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
|+.|++|++..... |+..+.++... -..-..+||+.++++|+.|...++|...
T Consensus 292 -D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 292 -DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred -CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence 99999999986543 34444443321 1122467899999999999999999754
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-24 Score=161.78 Aligned_cols=277 Identities=18% Similarity=0.304 Sum_probs=202.5
Q ss_pred ceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeee------eceeeccccccccceeeeeec-------ccCCcEEEEEc
Q psy6213 7 VHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVET------HNLRVGKNINLNFSCNDVAWS-------CIEENHIATGA 71 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~-------~~~~~~l~~~~ 71 (330)
...+.|+|||.- |+.. |..+++|++........ +..+..-.......|...+|- | +.+++|+.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeecc
Confidence 456899999999 6767 99999999865322111 111111111112235666775 5 778999999
Q ss_pred CCCcEEEEECCCCCCCceeEEec--cccc---ceeEEEEEecCCCEEEEEecCCcEEEEEe-ecCceeeee-------ec
Q psy6213 72 TNGAVVVWNLGQISRSKQERVFN--DHKR---TVNKVSFHYVESNWLISGSQDGTMRLFDI-RCQESTKIF-------HS 138 (330)
Q Consensus 72 ~dg~i~iw~~~~~~~~~~~~~~~--~~~~---~i~~i~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-------~~ 138 (330)
.+.-|++||.-+ ++....+. .|.. ...+++|+| ++.+|++|. ...|++||+ +.|.-...+ .+
T Consensus 131 r~~PIh~wdaft---G~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~g 205 (406)
T KOG2919|consen 131 RDQPIHLWDAFT---GKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFG 205 (406)
T ss_pred ccCceeeeeccc---cccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccc
Confidence 999999999988 44444443 3333 456899999 899998876 568999999 444322111 12
Q ss_pred CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec-CCcEEEEeCCCCc
Q psy6213 139 NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR-DKTIKVWDLSIKP 217 (330)
Q Consensus 139 ~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~ 217 (330)
..+-+.+++|+|....+++.++....+-||.-.. ..++..+-+|.+.|+.+.|.++|+.|++|.. |-.|..||++...
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 3567899999999887899999888888887665 6678888899999999999999999999984 6789999999875
Q ss_pred ccccee-cccc-ceEEE--EEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC
Q psy6213 218 SLEYSI-NTIA-SVSRI--KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 218 ~~~~~~-~~~~-~v~~~--~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
.+.... .|.. .-..| ...|++++ +++++ .+|.|++||+.+...++..+..+...++.++++|--.++|+++..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~-LasG~--tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEI-LASGD--TDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCce-eeccC--CCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 543332 2322 22333 45688886 77776 699999999998555577888899999999999998888887654
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=165.18 Aligned_cols=271 Identities=13% Similarity=0.262 Sum_probs=192.0
Q ss_pred eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc-CCcEEEEEcCCCcEEEEECCCCCCCceeEEecc
Q psy6213 19 AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI-EENHIATGATNGAVVVWNLGQISRSKQERVFND 95 (330)
Q Consensus 19 ~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 95 (330)
++++ .|.|++||..+++.++.++.+.... +.++|... ....+.+|+.||.|++||++...+ .....+..
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~-------N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-~a~~~~~~ 114 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATT-------NGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-SARISWTQ 114 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecCCCCcc-------cceEEecCCCCCeeEEeccCCeEEEEEeecchh-hhheeccC
Confidence 5556 9999999999999988888776554 66777642 467899999999999999987432 23333444
Q ss_pred cc-cceeEEEEEecCCCEEEEEec----CCcEEEEEeecCce-eeee-ecCCCCeEEEEEcCCCCcEEEEEecCCcEEEE
Q psy6213 96 HK-RTVNKVSFHYVESNWLISGSQ----DGTMRLFDIRCQES-TKIF-HSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168 (330)
Q Consensus 96 ~~-~~i~~i~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~ 168 (330)
+. .+..+++... .++.+++|+. +-.|.+||++..+. +..+ ..|...|+++.|+|..+.+|++|+.||.|.+|
T Consensus 115 ~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 115 QSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred CCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence 44 5667777664 6777887753 66899999998776 5444 46999999999999999999999999999999
Q ss_pred ecCCCcc--ceeeeccCCCCeEEEEEcCCC-CEEEEEecCCcEEEEeCCCCccccceeccc------------cceEEEE
Q psy6213 169 DVRRPEK--CFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIKPSLEYSINTI------------ASVSRIK 233 (330)
Q Consensus 169 d~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------~~v~~~~ 233 (330)
|++.... .+...-.|...|.++.|..++ +.+.+-+..+...+|+++.+.......... ..+-..
T Consensus 194 D~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~- 272 (376)
T KOG1188|consen 194 DTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE- 272 (376)
T ss_pred ecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-
Confidence 9986422 222333477889999999876 458888888999999998875432222110 111111
Q ss_pred EcCCC-CeEEEEeecccCCeEEEEEcc---CC--CccceEeec-CCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 234 WRPQR-KFHLASCSLVVDSSVNVWDIR---RP--YIPLASFTE-HKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 234 ~~~~~-~~l~~~~~~~~~~~i~i~d~~---~~--~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.+|.+ ...+..++ .-+...++-+. ++ ..+...+.+ |..-|+++.|...+.++.|||+||.+.+|+.
T Consensus 273 ~~~~~~~~~~l~g~--~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 273 HSPGDKDTCALAGT--DSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccCCCcceEEEecc--ccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 22333 33233332 24455544433 22 123455555 7778899999889999999999999999983
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=173.85 Aligned_cols=269 Identities=18% Similarity=0.228 Sum_probs=200.8
Q ss_pred eecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEE--cCCCcEEEEECCCCCCCceeEEeccc
Q psy6213 19 AQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATG--ATNGAVVVWNLGQISRSKQERVFNDH 96 (330)
Q Consensus 19 ~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~ 96 (330)
++++...+++||....+....+..+.... .+..++|+. .. .|+++ +.|..+++|.-... .+.....-...
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~p-----g~~s~~w~~-~n-~lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~ 78 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEP-----GDFSFNWQR-RN-FLVVASMAGDKVMRIKEKDGK-TPEVPRVRKLT 78 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCC-----cceeeeccc-cc-eEEEeecCCceeEEEecccCC-CCccceeeccc
Confidence 44447789999998766554444333222 258899986 33 34444 45677888876542 11111111111
Q ss_pred ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc
Q psy6213 97 KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC 176 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 176 (330)
...-.|++... ...++++|+..+.|+|||++...+.+.++.|...|+++.++..+.| +++++..|.|.+..+.++ ..
T Consensus 79 gd~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdiiih~~~t~-~~ 155 (673)
T KOG4378|consen 79 GDNAFCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDIIIHGTKTK-QK 155 (673)
T ss_pred cchHHHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce-eEEeccCCcEEEEecccC-cc
Confidence 22334444443 4588999999999999999977778889999999999999999985 999999999999999984 44
Q ss_pred eeeeccC-CCCeEEEEEcCCCC-EEEEEecCCcEEEEeCCCCccc-cceeccccceEEEEEcCCCCeEEEEeecccCCeE
Q psy6213 177 FYQFTAH-SGPIFACDWHPEHA-WLATASRDKTIKVWDLSIKPSL-EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSV 253 (330)
Q Consensus 177 ~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i 253 (330)
...+... ...+.-+.|+|..+ +|.+++.+|.|.+||....... .....|..+...++|+|..+.|+++.+ .|..|
T Consensus 156 tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki 233 (673)
T KOG4378|consen 156 TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKI 233 (673)
T ss_pred ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec--ccceE
Confidence 4455533 34566899999765 5678889999999999887553 344568899999999999999999999 89999
Q ss_pred EEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 254 NVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 254 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+||.+.... ...+. -..+...++|.++|.+|++|+..|.|..|+..
T Consensus 234 ~~yD~~s~~s-~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 234 NIYDIRSQAS-TDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred EEeecccccc-cceee-ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 9999986654 33332 35679999999999999999999999999743
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=176.45 Aligned_cols=273 Identities=19% Similarity=0.298 Sum_probs=203.2
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC--Cce-eEEecccccc
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR--SKQ-ERVFNDHKRT 99 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~-~~~~~~~~~~ 99 (330)
++.+.+|++.... .... .......|++++|+|.+.++++.|..+|.|.+||+..... ... ......|..+
T Consensus 221 ~~~~~vW~~~~p~-~Pe~------~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 221 DGVLLVWSLKNPN-TPEL------VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP 293 (555)
T ss_pred CceEEEEecCCCC-CceE------EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC
Confidence 3478999998752 1111 1222334799999999999999999999999999987433 111 1223468899
Q ss_pred eeEEEEEecCC--CEEEEEecCCcEEEEEeecCcee------eeee------cCCCCeEEEEEcCCCCcEEEEEecCCcE
Q psy6213 100 VNKVSFHYVES--NWLISGSQDGTMRLFDIRCQEST------KIFH------SNTESVRDVEFNPHSPYAFASVSENGTI 165 (330)
Q Consensus 100 i~~i~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~------~~~~------~~~~~v~~~~~~~~~~~~~~~~~~dg~i 165 (330)
+..+.|.. +. .-+++++.||.|..|+++.-... .... .....+++++|.+..++.|+.|++.|.|
T Consensus 294 v~~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 294 VTAVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred eEEEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 99999975 33 34899999999999987643221 1111 1234689999999999899999999998
Q ss_pred EEEecC---CCc----cceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCC-CCccccceeccccceEEEEEcCC
Q psy6213 166 QQWDVR---RPE----KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS-IKPSLEYSINTIASVSRIKWRPQ 237 (330)
Q Consensus 166 ~i~d~~---~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~ 237 (330)
..-+.. ... +....+..|.++|+++.++|=+..++..+.|.+++||... ....+.....+...+++++|||.
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence 874332 222 2233556688999999999976655555559999999987 44445555556667999999999
Q ss_pred CCeEEEEeecccCCeEEEEEccCCC-ccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecccee
Q psy6213 238 RKFHLASCSLVVDSSVNVWDIRRPY-IPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKIF 305 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 305 (330)
...+++++. .+|.|.+||+.... .|+.....+....+.+.|+++|+.|+.|...|.+++|+....+
T Consensus 453 rpavF~~~d--~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l 519 (555)
T KOG1587|consen 453 RPAVFATVD--GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL 519 (555)
T ss_pred CceEEEEEc--CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence 999999998 79999999997543 4556665566777888999999999999999999999876444
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-24 Score=165.63 Aligned_cols=294 Identities=13% Similarity=0.187 Sum_probs=221.9
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|+++.|+.++++|++| |..+++|+++..-..+..+.-.-....+...|.|++|.. .+..+++|..+++|..-
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcceeEee
Confidence 599999999999999996666 999999999763222211111111122234579999998 88999999999999999
Q ss_pred ECCCCCCCceeEEec--ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc-ee--eeeecCCCCeEEEEEcCCCCc
Q psy6213 80 NLGQISRSKQERVFN--DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE-ST--KIFHSNTESVRDVEFNPHSPY 154 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~--~~~~~~~~~v~~~~~~~~~~~ 154 (330)
|+++ .+.+..+. ...+.|..+..+| -.+.|++.+.++.|.+||.+... .. ............+.|+|..+.
T Consensus 133 DiEt---~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 133 DIET---KQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eccc---ceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 9988 44444443 2335899999999 68999999999999999998665 22 222334566889999999999
Q ss_pred EEEEEecCCcEEEEecCCCccceeeeccC------CCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccc--
Q psy6213 155 AFASVSENGTIQQWDVRRPEKCFYQFTAH------SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI-- 226 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-- 226 (330)
++++.+..+-+-+||.+....++...... ...-.+..|+|+|+.|.+.-....-.+||+-..++......|.
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 99999999999999999866555433221 2234678899999999988877778889998876655544432
Q ss_pred -----cceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC----------------------ccceEeecCCCCeEEEE
Q psy6213 227 -----ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY----------------------IPLASFTEHKDVVSGLA 279 (330)
Q Consensus 227 -----~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~----------------------~~~~~~~~~~~~v~~~~ 279 (330)
..+.+++|..|.. +++++ .+-.|++|.+.... ..+..+++|..-++.+.
T Consensus 289 GY~N~~T~KS~~F~~D~~--v~tGS--D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFIDDYT--VATGS--DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred cceeeeeeeeeeeeccee--eeccC--cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 2466778876654 77777 68899999885311 11566789999999999
Q ss_pred EecCCCEEEEeecCCeEeeeeccce
Q psy6213 280 WRGDPQLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 280 ~~~~~~~l~s~~~dg~i~iw~~~~~ 304 (330)
|+|...+|++.+-...+++|...+.
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~~r~ 389 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSDHRL 389 (609)
T ss_pred ecCCcceEeccchhhheeccccccC
Confidence 9999999999999999999986643
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=164.06 Aligned_cols=287 Identities=18% Similarity=0.285 Sum_probs=205.0
Q ss_pred cccceEEEEeeCCC-e-eecC-CCeEEEEEcCCcceee---eeceeeccccccccceeeeeecccCCcEEEEEcCCCcEE
Q psy6213 4 LSPVHKHGLKADNG-L-AQPS-RNVFKIFLIKDTEFVE---THNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVV 77 (330)
Q Consensus 4 ~~~v~~~~~s~~~~-~-~~~g-d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 77 (330)
..+|..+.|.++.. . +++| |..|+||.++.++... ..... .....+...|+++.|+| ++++||+|+.+|.+.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~-s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYL-SSLSRHTRAVNVVRFSP-DGELLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEe-ecccCCcceeEEEEEcC-CcCeeeecCCCceEE
Confidence 36789999999877 4 5556 9999999887643322 11111 12223445579999999 999999999999999
Q ss_pred EEECC--------C-----CCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeE
Q psy6213 78 VWNLG--------Q-----ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVR 144 (330)
Q Consensus 78 iw~~~--------~-----~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 144 (330)
+|... + .+.....+.+.+|...|..++|+| ++.++++++.|..+++||+..|+....+..|...+.
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 99876 2 122344566778999999999998 999999999999999999999999999999999999
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEecCCCccceeee----------cc---------CC----CCeEEEEEcCCCCEEEE
Q psy6213 145 DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQF----------TA---------HS----GPIFACDWHPEHAWLAT 201 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~----------~~---------~~----~~i~~~~~~~~~~~l~~ 201 (330)
.++|.|-+++ +++-+.|...+.+.+.... .+... .. |. .-...++|+|+|.++++
T Consensus 170 gvawDpl~qy-v~s~s~dr~~~~~~~~~~~-~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt 247 (434)
T KOG1009|consen 170 GVAWDPLNQY-VASKSSDRHPEGFSAKLKQ-VIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT 247 (434)
T ss_pred eeecchhhhh-hhhhccCcccceeeeeeee-eeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence 9999999996 7787778777776655311 11100 00 11 12356789999999887
Q ss_pred Eec----CC-----cEEEEeCCCCccccceec-cccceEEEEEcCC-----------------CCeEEEEeecccCCeEE
Q psy6213 202 ASR----DK-----TIKVWDLSIKPSLEYSIN-TIASVSRIKWRPQ-----------------RKFHLASCSLVVDSSVN 254 (330)
Q Consensus 202 ~~~----dg-----~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~-----------------~~~l~~~~~~~~~~~i~ 254 (330)
... .+ ..++|+-...+......+ ...+...+.|+|- -+.+++.+. .+.++
T Consensus 248 Pag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt---~~svy 324 (434)
T KOG1009|consen 248 PAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT---KNSVY 324 (434)
T ss_pred ccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee---cceEE
Confidence 652 22 235555443333222222 2334444444441 123466665 89999
Q ss_pred EEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEee
Q psy6213 255 VWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPR 298 (330)
Q Consensus 255 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 298 (330)
+||.+........-.-|-..|++++|++||..|+..|.||...+
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 99999876534444568889999999999999999999997655
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=168.83 Aligned_cols=269 Identities=14% Similarity=0.195 Sum_probs=198.2
Q ss_pred CcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccc-eeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFS-CNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
|...|.|+.|+.....+.++ |..+.+|.-.+.+-......+.......... -.+..=- ...+.|+.++.||.+.+.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g-~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGG-KGSDTLLICSNDGRFVILN 91 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCC-CCcceEEEEcCCceEEEec
Confidence 67788899999888885555 7766666544333223222222221110000 0000000 1345788889999999987
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
-. ++.......|.+.+.+-.|+| +|.-|++++.||.|++|.- +|-...++.....+|+|++|.|+.+.++++.+
T Consensus 92 k~----~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 92 KS----ARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred cc----chhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 54 466677889999999999999 9999999999999999984 46555556667789999999999987666544
Q ss_pred cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCe
Q psy6213 161 ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKF 240 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 240 (330)
+.+.+=.+.. ...+...+.|.+-|.++.|++..+++++|+.|-..++||-... .+.....|+.+|++++|.|+.
T Consensus 166 --~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-~Lf~S~~~ey~ITSva~npd~-- 239 (737)
T KOG1524|consen 166 --GHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-NLFTSAAEEYAITSVAFNPEK-- 239 (737)
T ss_pred --CeEEEeeccc-ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc-ccccCChhccceeeeeecccc--
Confidence 5677777665 4456678899999999999999999999999999999997655 677777889999999999994
Q ss_pred EEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 241 HLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 241 l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
+++.++ -++++ + -....+.|..++|++||..++.|+..|.+.+=
T Consensus 240 ~~~v~S---~nt~R---~---------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 240 DYLLWS---YNTAR---F---------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ceeeee---eeeee---e---------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 355554 44444 1 12335789999999999999999999988764
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=158.63 Aligned_cols=248 Identities=18% Similarity=0.255 Sum_probs=192.7
Q ss_pred ccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC----CCceeEEecccccceeEEEEEecCCCEEEEEecCCcE
Q psy6213 47 NINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS----RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTM 122 (330)
Q Consensus 47 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i 122 (330)
+.++..+|..++|+|.+.+.||+|+.|.+|.||++.... ...++..+.+|...|--+.|+|...+.|++++.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 345566789999999999999999999999999987632 2355678899999999999999889999999999999
Q ss_pred EEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCC-CeEEEEEcCCCCEEEE
Q psy6213 123 RLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSG-PIFACDWHPEHAWLAT 201 (330)
Q Consensus 123 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~ 201 (330)
.+||+.+++.+.++. |...|.++.|+.+|. ++++++.|..|++||.++ ++.+..-.+|.+ .-....|-.+|..+-|
T Consensus 157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~-~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRR-GTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEeccCCceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCC-CcEeeecccccCCCcceeEEeccCceeee
Confidence 999999999988888 999999999999999 699999999999999998 666666667765 3445667778885444
Q ss_pred Ee---cCCcEEEEeCCCCccc--cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec--CCCC
Q psy6213 202 AS---RDKTIKVWDLSIKPSL--EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE--HKDV 274 (330)
Q Consensus 202 ~~---~dg~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~ 274 (330)
|- .+.++-+||..+.+.. .........|.---|.||...+...+. .|+.|+-|.+......+..+.. ...+
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK--GD~~IRYyEit~d~P~~hyln~f~S~ep 311 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK--GDSSIRYFEITNEPPFVHYLNTFSSKEP 311 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEec--CCcceEEEEecCCCceeEEecccccCCc
Confidence 43 5678999998877553 334445677888889999998777776 7999999999877643444432 2346
Q ss_pred eEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 275 VSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 275 v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
-.++.|-|... +-.+..-..++|+.
T Consensus 312 QRG~g~mPKRG--l~Vs~cEI~rfyKl 336 (472)
T KOG0303|consen 312 QRGMGFMPKRG--LDVSKCEIARFYKL 336 (472)
T ss_pred ccccccccccc--ccchHHHHHHHHHh
Confidence 67778877432 22333344455543
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=173.02 Aligned_cols=273 Identities=16% Similarity=0.202 Sum_probs=214.2
Q ss_pred cceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 6 PVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
.|+.++|-|||..+... +..+.+||.+.|...+.++.|... |++++|+. +|+++|+|+.|..|.+|+..-
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDt-------VycVAys~-dGkrFASG~aDK~VI~W~~kl- 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDT-------VYCVAYAK-DGKRFASGSADKSVIIWTSKL- 84 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccce-------EEEEEEcc-CCceeccCCCceeEEEecccc-
Confidence 68999999999995544 889999999999999888887665 59999998 999999999999999998543
Q ss_pred CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 85 SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
...+ . ..|.+.|.|+.|+| -...|++++-. ..-+|....... ...+ ....+.+++|..||.+ ++.|-.+|+
T Consensus 85 --EG~L-k-YSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqy-lalG~~nGT 155 (1081)
T KOG1538|consen 85 --EGIL-K-YSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQY-LALGMFNGT 155 (1081)
T ss_pred --ccee-e-eccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCCCcE-EEEeccCce
Confidence 1111 1 35999999999999 77888888754 577888764432 2222 3457889999999994 999999999
Q ss_pred EEEEecCCCccc-eeeeccCCCCeEEEEEcCCC-----CEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCC
Q psy6213 165 IQQWDVRRPEKC-FYQFTAHSGPIFACDWHPEH-----AWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQR 238 (330)
Q Consensus 165 i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 238 (330)
|.+-+.....+. +..-.+...+|.+++|+|.. ..+++.....++.+|.+... .+.......-...++.+.++|
T Consensus 156 IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 156 ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred EEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhheeccCC
Confidence 999875532221 12222467799999999953 47888888889999988754 443344445567899999999
Q ss_pred CeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 239 KFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+|++.+++ |+.+.+|--+.- . +.++......|+.++..|+++.++.|+.||+|--|+..
T Consensus 235 Ey~LiGGs---dk~L~~fTR~Gv-r-LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 235 EYILLGGS---DKQLSLFTRDGV-R-LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cEEEEccC---CCceEEEeecCe-E-EeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99888887 999999975432 2 55666667899999999999999999999999988743
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=154.51 Aligned_cols=252 Identities=18% Similarity=0.293 Sum_probs=189.8
Q ss_pred CCcccceEEEEeeCCCe-eecC-C--------CeEEEEEcCCcceee-eeceee--ccccccccceeeeeecccCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-R--------NVFKIFLIKDTEFVE-THNLRV--GKNINLNFSCNDVAWSCIEENHIA 68 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d--------~~i~iw~~~~~~~~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~ 68 (330)
-|.+.|+.++-+|-.+. +++. . ..+.||.+....-.. ...+.. .-....-..+.|+.|.| ++..++
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P-ns~kla 139 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP-NSDKLA 139 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC-CCCeeE
Confidence 36789999999997766 5443 1 357899887532110 000000 00001112479999999 888888
Q ss_pred EEcCCCcEEEEECCCCCCCceeEEe-----cccccceeEEEEEe-cCCCEEEEEecCCcEEEEEeecCceeeeee-cCCC
Q psy6213 69 TGATNGAVVVWNLGQISRSKQERVF-----NDHKRTVNKVSFHY-VESNWLISGSQDGTMRLFDIRCQESTKIFH-SNTE 141 (330)
Q Consensus 69 ~~~~dg~i~iw~~~~~~~~~~~~~~-----~~~~~~i~~i~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~ 141 (330)
+-. |..|.+|+++..... ...+ ..+....++-+|+| -+++.+++.+ |+++..||+++.+....++ .|..
T Consensus 140 sm~-dn~i~l~~l~ess~~--vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq 215 (370)
T KOG1007|consen 140 SMD-DNNIVLWSLDESSKI--VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQ 215 (370)
T ss_pred Eec-cCceEEEEcccCcch--heeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcc
Confidence 776 778999999874321 1111 23566788889998 5677777766 7899999999887766654 4778
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCc---
Q psy6213 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKP--- 217 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--- 217 (330)
.+..+.|+|+.++.|+++++||.|++||.++...++..+.+|...+.++.|+|. .+++++++.|..|.+|....-.
T Consensus 216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 899999999999999999999999999999989999999999999999999994 5788999999999999653211
Q ss_pred --------------------------cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 218 --------------------------SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 218 --------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
.+.....|...|.+++|+.-.++++|+-+ .||++.|=.+..
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS--YDGRviIs~V~r 362 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS--YDGRVIISSVPR 362 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec--cCceEEeecCCh
Confidence 12233446788999999999999999999 899999877654
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=160.05 Aligned_cols=237 Identities=17% Similarity=0.239 Sum_probs=183.8
Q ss_pred CCcEEEEE---cCCCcEEEEECCCCC-CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC-------c
Q psy6213 63 EENHIATG---ATNGAVVVWNLGQIS-RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-------E 131 (330)
Q Consensus 63 ~~~~l~~~---~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~ 131 (330)
+..++|.. +..|...+.-+...+ -....-.+.+|+++|..++|+|.+.+.+|+|+.|.+|.+|++..+ +
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 45566543 334555555544322 123334567999999999999999999999999999999998643 4
Q ss_pred eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 132 STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 132 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
++..+.+|...|..++|+|...++|++++.|.+|.+||+.+ +..+.++. |...|.++.|+.+|.+|++.+.|..|+||
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~ 200 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVI 200 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC-CceeeecC-CCCeEEEEEeccCCceeeeecccceeEEE
Confidence 57778899999999999999998999999999999999999 45555566 99999999999999999999999999999
Q ss_pred eCCCCccccceecc-ccceEEEEEcCCCCeEEEEe-ecccCCeEEEEEccCCCccceEee-cCCCCeEEEEEecCCCEEE
Q psy6213 212 DLSIKPSLEYSINT-IASVSRIKWRPQRKFHLASC-SLVVDSSVNVWDIRRPYIPLASFT-EHKDVVSGLAWRGDPQLFI 288 (330)
Q Consensus 212 d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~~~~~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~ 288 (330)
|.++++.+.....| ......+.|-.++. ++.++ +...+..+.+||..+.+.|+.... ..+..|.---|.||..+++
T Consensus 201 dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 201 DPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVY 279 (472)
T ss_pred cCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEE
Confidence 99999766655444 45567788888888 45554 333578999999887776543322 2234566667888888887
Q ss_pred Eee-cCCeEeeeecc
Q psy6213 289 ASS-RVSIIPRAKNI 302 (330)
Q Consensus 289 s~~-~dg~i~iw~~~ 302 (330)
.++ .|+.|+-|+..
T Consensus 280 l~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 280 LCGKGDSSIRYFEIT 294 (472)
T ss_pred EEecCCcceEEEEec
Confidence 766 58999999854
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=163.65 Aligned_cols=240 Identities=14% Similarity=0.212 Sum_probs=192.2
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE 131 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 131 (330)
..|+++.|+| ....+++|+.||.++||.++. +....++.+.-...+|.+..|.|++...+++++....++.||+.+.+
T Consensus 214 ~~I~sv~FHp-~~plllvaG~d~~lrifqvDG-k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 214 GGITSVQFHP-TAPLLLVAGLDGTLRIFQVDG-KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecC-CCceEEEecCCCcEEEEEecC-ccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 4479999999 999999999999999999986 33456666777788999999999444489999999999999998876
Q ss_pred eeee--eecC-CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcE
Q psy6213 132 STKI--FHSN-TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTI 208 (330)
Q Consensus 132 ~~~~--~~~~-~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 208 (330)
..+. ..++ ...+.....+|+++ +++..+..|.|.+....+ .+.+..++ -.+.+..++|+.+++.|++++.+|.|
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKT-KELITSFK-IEGVVSDFTFSSDSKELLASGGTGEV 368 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhh-hhhhheee-eccEEeeEEEecCCcEEEEEcCCceE
Confidence 5432 2222 24577888999999 588999999999999988 66666766 56889999999999999999999999
Q ss_pred EEEeCCCCccccceecc-ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC-----CCccceEeecCCCCeEEEEEec
Q psy6213 209 KVWDLSIKPSLEYSINT-IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR-----PYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 209 ~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
.+||++...++...... .-.-+.++.++++.| +|+++ ..|.|.|||.++ ..+|+..+..-...|++|+|+|
T Consensus 369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y-lA~GS--~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY-LATGS--DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred EEEecCCcceEEEEeecCccceeeeeecCCCce-EEecc--CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 99999998555444432 223567788899996 78887 799999999653 3345666666677899999999
Q ss_pred CCCEEEEeec--CCeEeee
Q psy6213 283 DPQLFIASSR--VSIIPRA 299 (330)
Q Consensus 283 ~~~~l~s~~~--dg~i~iw 299 (330)
|+++||.+|. +..+++-
T Consensus 446 d~qiLAiaS~~~knalrLV 464 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLV 464 (514)
T ss_pred chhhhhhhhhccccceEEE
Confidence 9999998876 4456654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-21 Score=159.78 Aligned_cols=270 Identities=11% Similarity=0.148 Sum_probs=178.3
Q ss_pred eecC-CCeEEEEEcCC-cceeeeeceeeccccccccceeeeeecccCCcEEEEEc-CCCcEEEEECCCCCCCceeEEecc
Q psy6213 19 AQPS-RNVFKIFLIKD-TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA-TNGAVVVWNLGQISRSKQERVFND 95 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~ 95 (330)
++.+ ++.|.+|++.+ ++.......... .....++++| ++++|++++ .++.|.+|++.............
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~------~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~- 77 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVP------GQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESP- 77 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecC------CCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeec-
Confidence 5555 99999999974 332222112111 1236789999 888887664 57889999987422222222222
Q ss_pred cccceeEEEEEecCCCEEEEEe-cCCcEEEEEeecCc----eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEec
Q psy6213 96 HKRTVNKVSFHYVESNWLISGS-QDGTMRLFDIRCQE----STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV 170 (330)
Q Consensus 96 ~~~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~ 170 (330)
.......++++| +++++++++ .++.|.+|++++.. .+..+. +......++++|++++++++...++.|.+||+
T Consensus 78 ~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 78 LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 234567899998 777777665 48899999997432 222222 23456778999999977777778899999999
Q ss_pred CCCccce------eeeccCCCCeEEEEEcCCCCEEEEEec-CCcEEEEeCCCC--cc--cccee--c----cccceEEEE
Q psy6213 171 RRPEKCF------YQFTAHSGPIFACDWHPEHAWLATASR-DKTIKVWDLSIK--PS--LEYSI--N----TIASVSRIK 233 (330)
Q Consensus 171 ~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~--~~~~~--~----~~~~v~~~~ 233 (330)
++.+... .... .......+.|+|+|++++++.. ++.|.+||+... +. ..... + .......+.
T Consensus 156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred CCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 8633221 1111 2344678999999999988876 899999999742 11 11110 0 112234688
Q ss_pred EcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC---CCCeEEEEEecCCCEEEEeec-CCeEeeeecc
Q psy6213 234 WRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH---KDVVSGLAWRGDPQLFIASSR-VSIIPRAKNI 302 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~-dg~i~iw~~~ 302 (330)
++|++++++++.. .++.|.+|++....... .+..+ ......+.++|||++|+++.. ++.|.+|+..
T Consensus 235 ~~pdg~~lyv~~~--~~~~I~v~~i~~~~~~~-~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 235 ITPDGRHLYACDR--TASLISVFSVSEDGSVL-SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECCCCCEEEEecC--CCCeEEEEEEeCCCCeE-EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999999777755 58999999996543211 22222 124568999999999998775 8999999753
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=149.78 Aligned_cols=269 Identities=19% Similarity=0.251 Sum_probs=196.1
Q ss_pred CCeEEEEEcCCcc--eeeeeceeeccccccccceeeeeecccCCcEEEEEcCC-------CcEEEEECCCCCCC------
Q psy6213 23 RNVFKIFLIKDTE--FVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN-------GAVVVWNLGQISRS------ 87 (330)
Q Consensus 23 d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~~~~------ 87 (330)
|+.|.+.+++.+. +....-.| ....|..++-+|.+...|+++..+ ....||.+..+...
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h------~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tl 112 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFH------HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTL 112 (370)
T ss_pred cceeEEEEecCccchhhhhhhhc------CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchh
Confidence 7888888776632 22211111 122368888889777788877553 24779998764322
Q ss_pred ceeEEec-ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-eeeee-----cCCCCeEEEEEcC--CCCcEEEE
Q psy6213 88 KQERVFN-DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-TKIFH-----SNTESVRDVEFNP--HSPYAFAS 158 (330)
Q Consensus 88 ~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~~~~~ 158 (330)
+++..+. .+-+.|.|+.|.| ++..+++-. |..|.+|++..+.. ...+. .+....++-+|+| ++. .++
T Consensus 113 E~v~~Ldteavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~- 188 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVA- 188 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEE-
Confidence 2223333 4557899999999 788888776 78999999987765 33332 2345678889999 344 344
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCC-EEEEEecCCcEEEEeCCCCcc-ccceeccccceEEEEEcC
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHA-WLATASRDKTIKVWDLSIKPS-LEYSINTIASVSRIKWRP 236 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~ 236 (330)
...|+++..||+++..+....-.+|...+..+.|+|+.+ +|++++.||.|++||.+..+. +....+|...+.++.|+|
T Consensus 189 tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 189 TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred EeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence 456899999999986555555567889999999999765 688999999999999998765 455566889999999999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCC----------------------------ccceEeecCCCCeEEEEEec-CCCEE
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPY----------------------------IPLASFTEHKDVVSGLAWRG-DPQLF 287 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~-~~~~l 287 (330)
.-..|+.+++ .|..|.+|....-. -.+.++..|+..|++++|+. |.-.+
T Consensus 269 ~hdqLiLs~~--SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF 346 (370)
T KOG1007|consen 269 EHDQLILSGG--SDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF 346 (370)
T ss_pred ccceEEEecC--CCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence 8887888887 79999998653210 01456778999999999997 77788
Q ss_pred EEeecCCeEeeeeccc
Q psy6213 288 IASSRVSIIPRAKNIK 303 (330)
Q Consensus 288 ~s~~~dg~i~iw~~~~ 303 (330)
|+-+.||.+.|-+..+
T Consensus 347 ASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 347 ASLSYDGRVIISSVPR 362 (370)
T ss_pred EEeccCceEEeecCCh
Confidence 8899999999865443
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.8e-23 Score=154.61 Aligned_cols=207 Identities=20% Similarity=0.233 Sum_probs=160.0
Q ss_pred EEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee--eee--ecCCCCeEEEEEcCCCCcEEEEEecCCcEE
Q psy6213 91 RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST--KIF--HSNTESVRDVEFNPHSPYAFASVSENGTIQ 166 (330)
Q Consensus 91 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~--~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~ 166 (330)
..+++|.+.|++++|+. +|++|++++.|+.|++|+++..+.. +.+ ...-+..+.+.|.||-+.++++.-....++
T Consensus 80 ~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45789999999999996 9999999999999999999864321 111 112235788999999987777777778899
Q ss_pred EEecCCCc--cce---------eeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEc
Q psy6213 167 QWDVRRPE--KCF---------YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWR 235 (330)
Q Consensus 167 i~d~~~~~--~~~---------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 235 (330)
+|.+.... ... ..-+.|.-.+..+-...++.+|++++.|..|.+|+++ ++.+.........-...+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 99775421 111 1112356667777777788999999999999999999 54555555555667788999
Q ss_pred CCCCeEEEEeecccCCeEEEEEcc---CCC----ccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDIR---RPY----IPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~~---~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
|+|+++++++ ..-.+++|.+- .+. ..+..+.+|...|..++|+++...+++.|.||+.++|+..
T Consensus 238 P~GRFia~~g---FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 238 PDGRFIAVSG---FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CCCcEEEEec---CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 9999855555 58999999873 221 1266789999999999999999999999999999999854
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=166.30 Aligned_cols=239 Identities=15% Similarity=0.287 Sum_probs=190.8
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
...|.++...| .+..|++|+.||+|+||.+.+ +.++.++. ..+.|.|++|+|.....++.+.....+.+.+..-|
T Consensus 400 tg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~T---gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 400 TGLVRSISVDP-SGEWLASGSDDGTVRIWEIAT---GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred CCeEEEEEecC-CcceeeecCCCCcEEEEEeec---ceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 34478999999 999999999999999999999 88888775 45799999999954444444444444555442211
Q ss_pred ---------------------------------c----eeeeeecCCCCeEEEEEcCCCCcEEEEEec---CCcEEEEec
Q psy6213 131 ---------------------------------E----STKIFHSNTESVRDVEFNPHSPYAFASVSE---NGTIQQWDV 170 (330)
Q Consensus 131 ---------------------------------~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---dg~i~i~d~ 170 (330)
+ -+...-.|...|..+.|+..|.| |++... ...|.|+++
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDY-latV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDY-LATVMPDSGNKSVLIHQL 553 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCce-EEEeccCCCcceEEEEec
Confidence 0 01222236778999999999997 555543 345889998
Q ss_pred CCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccC
Q psy6213 171 RRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVD 250 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 250 (330)
.. .....-|....+.+.++.|+|...+|++++. ..|+|||+...............+..++.+|.|..+++++ .|
T Consensus 554 SK-~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs---~d 628 (733)
T KOG0650|consen 554 SK-RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS---YD 628 (733)
T ss_pred cc-ccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec---CC
Confidence 86 4444566667788999999999999998887 6899999998766666667778899999999999977776 49
Q ss_pred CeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 251 SSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 251 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+.+..||+.-...+.+.+..|...+++++|++.-.++++|+.||.+.|+.
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999999988888999999999999999999999999999999999985
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=154.66 Aligned_cols=236 Identities=16% Similarity=0.231 Sum_probs=183.8
Q ss_pred ccceEEEEe-------eCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCc
Q psy6213 5 SPVHKHGLK-------ADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA 75 (330)
Q Consensus 5 ~~v~~~~~s-------~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 75 (330)
+.|...+|- |+..+ +++. +.-|++||.-+|+....+..-.+.. .+.. -.+++|+| +|.+|++|. ...
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~d-e~ta-AhsL~Fs~-DGeqlfaGy-krc 180 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQD-EYTA-AHSLQFSP-DGEQLFAGY-KRC 180 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHH-hhhh-heeEEecC-CCCeEeecc-cce
Confidence 345566665 56667 5556 9999999999999887766433211 1111 27899999 999998775 568
Q ss_pred EEEEECCCCCCCceeEEec-----ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcC
Q psy6213 76 VVVWNLGQISRSKQERVFN-----DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 150 (330)
|+++|+..+++.-...... +..+.+.+++|+|.+...++.|+....+-||.-..+.++..+.+|.+.|+.++|.+
T Consensus 181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence 9999996644433333222 23678999999998888999999999999999888999999999999999999999
Q ss_pred CCCcEEEEEe-cCCcEEEEecCCCccceeeeccCCC-CeEE--EEEcCCCCEEEEEecCCcEEEEeCCC-Cccccceecc
Q psy6213 151 HSPYAFASVS-ENGTIQQWDVRRPEKCFYQFTAHSG-PIFA--CDWHPEHAWLATASRDKTIKVWDLSI-KPSLEYSINT 225 (330)
Q Consensus 151 ~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~--~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~ 225 (330)
+|+. |++|. .+-.|..||++....++..+..|.+ .-.. ....|++++|++|+.||.|++||++. +........+
T Consensus 261 dGn~-lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~ 339 (406)
T KOG2919|consen 261 DGNK-LFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY 339 (406)
T ss_pred CcCe-ecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc
Confidence 9996 55554 5788999999998888888887765 3333 45568899999999999999999998 4446666677
Q ss_pred ccceEEEEEcCCCCeEEEEee
Q psy6213 226 IASVSRIKWRPQRKFHLASCS 246 (330)
Q Consensus 226 ~~~v~~~~~~~~~~~l~~~~~ 246 (330)
...++.++++|--+ ++++++
T Consensus 340 sd~vNgvslnP~mp-ilatss 359 (406)
T KOG2919|consen 340 SDTVNGVSLNPIMP-ILATSS 359 (406)
T ss_pred cccccceecCcccc-eeeecc
Confidence 88899999999977 477765
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-20 Score=159.57 Aligned_cols=287 Identities=26% Similarity=0.432 Sum_probs=219.3
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcc-eeeeeceeeccccccccceeeeee-cccCCc-EEEEEcC-CCc
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTE-FVETHNLRVGKNINLNFSCNDVAW-SCIEEN-HIATGAT-NGA 75 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-~l~~~~~-dg~ 75 (330)
.|...+.++.+.+.+.. +..+ |+.+.+|+...+. ....+..... ..+..+.+ ++ ++. .++..+. |+.
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~d~~ 135 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD------SSVSKLALSSP-DGNSILLASSSLDGT 135 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC------CceeeEEEECC-CcceEEeccCCCCcc
Confidence 47889999999999998 5555 9999999998875 3333332211 12345555 77 555 5555444 899
Q ss_pred EEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec-CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCc
Q psy6213 76 VVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ-DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPY 154 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 154 (330)
+.+|+... .......+..|...|..++|+| ++..+++++. |+.+++|+...+..+..+..|...+.+++|+|++..
T Consensus 136 ~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 136 VKLWDLST--PGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred EEEEEecC--CCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence 99999875 1356667788999999999998 7778888875 999999999988888888889999999999999874
Q ss_pred EEEEEecCCcEEEEecCCCcccee-eeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc-ccceeccccceEEE
Q psy6213 155 AFASVSENGTIQQWDVRRPEKCFY-QFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS-LEYSINTIASVSRI 232 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~ 232 (330)
++++++.|+.+++||... ..... .+..|.... ...|+|++.++++++.|+.+++|+.+.... ......+...+.++
T Consensus 213 ~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 290 (466)
T COG2319 213 LIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290 (466)
T ss_pred EEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEE
Confidence 455558999999998885 44455 577777775 448999998999999999999999987754 22224567899999
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCccceEe--ecCCCCeEEEEEecCCCEEEEe-ecCCeEeeeeccce
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASF--TEHKDVVSGLAWRGDPQLFIAS-SRVSIIPRAKNIKI 304 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iw~~~~~ 304 (330)
.|.|++..+++ ++ .|+.+.+||...... .... ..|...+..+.|.+++..++.+ ..|+.+.+|.....
T Consensus 291 ~~~~~~~~~~~-~~--~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 291 AFSPDGKLLAS-GS--SDGTVRLWDLETGKL-LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred EECCCCCEEEE-ee--CCCcEEEEEcCCCce-EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 99998887666 55 478899999887765 3333 3777789999994342556555 68888999875543
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=150.09 Aligned_cols=282 Identities=18% Similarity=0.193 Sum_probs=194.8
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.|.+.|+++.|-.++++++.. -|.|++|++.+......+.+..... |+.+.--| ++.+.+-+.|+.+.+|+
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~------it~lq~~p--~d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLF------ITNLQSIP--NDSLDTQGRDPLLILWT 83 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccce------eeceeecC--CcchhhcCCCceEEEEE
Confidence 488899999999998866666 9999999999987666665443322 46666666 37788889999999999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEec----CC----CEEEEEecCC-cEEEEEeecCceeeeee----cCCCCeEEEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYV----ES----NWLISGSQDG-TMRLFDIRCQESTKIFH----SNTESVRDVE 147 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~----~~----~~l~~~~~d~-~i~i~d~~~~~~~~~~~----~~~~~v~~~~ 147 (330)
+.. ...+. .|.-.++++.|.+. ++ .+++.-+... .+.+-|......+.... ...+.+.+..
T Consensus 84 ia~---s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 84 IAY---SAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred ccC---cceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 976 23222 24445555555431 00 1111111100 01222221111122111 2334566665
Q ss_pred EcC--CCCcEEEEEecCCcEEEEecCCCcc---------ceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC
Q psy6213 148 FNP--HSPYAFASVSENGTIQQWDVRRPEK---------CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK 216 (330)
Q Consensus 148 ~~~--~~~~~~~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 216 (330)
+.. ....++++|.++|.+.+||+.++.+ .......|..++.++.+.+.-..=++|+.+..+..|.+...
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 432 2334677888999999999998422 22234468899999999986666678888888999988654
Q ss_pred cc----ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeec
Q psy6213 217 PS----LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 217 ~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
.. .....-....+..+..-||++ ++|+++ .|++||+|+.++... +..+.-|.+.|++++|+|+...+|+++.
T Consensus 238 ~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAG--WD~RiRVyswrtl~p-LAVLkyHsagvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 238 TGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAG--WDHRIRVYSWRTLNP-LAVLKYHSAGVNAVAFSPDCELMAAASK 313 (323)
T ss_pred cCcccccceEEecCCCccceEEccCCc-EEeecc--cCCcEEEEEeccCCc-hhhhhhhhcceeEEEeCCCCchhhhccC
Confidence 11 112222345688899999999 588888 899999999999864 8999999999999999999999999999
Q ss_pred CCeEeeeec
Q psy6213 293 VSIIPRAKN 301 (330)
Q Consensus 293 dg~i~iw~~ 301 (330)
|++|.+|+.
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 999999985
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=165.89 Aligned_cols=254 Identities=16% Similarity=0.273 Sum_probs=185.8
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC----CCceeEEeccccc
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS----RSKQERVFNDHKR 98 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~ 98 (330)
.|.|-||++.....+..--... ..-...|+++.|.|.+...||+++.||.|++|.+..++ ...+...+..|..
T Consensus 602 gG~iai~el~~PGrLPDgv~p~---l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPG---LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccc---cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 8999999998633221111110 00112379999999999999999999999999987633 2455677889999
Q ss_pred ceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee
Q psy6213 99 TVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY 178 (330)
Q Consensus 99 ~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 178 (330)
.|+++.|+|-..+.|++++.|-+|++||+.+++....+.+|.+.|..++|+|+|+ .+++.+.||+|++|+.++..++++
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~ 757 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVY 757 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccc
Confidence 9999999998899999999999999999999999999999999999999999999 699999999999999998776666
Q ss_pred eeccCC-CCeEEEEEcCCCCEEEEEecCC----cEEEEeCCCCcc-ccce--eccccceEEEEEcCCCCeEEEEeecccC
Q psy6213 179 QFTAHS-GPIFACDWHPEHAWLATASRDK----TIKVWDLSIKPS-LEYS--INTIASVSRIKWRPQRKFHLASCSLVVD 250 (330)
Q Consensus 179 ~~~~~~-~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~-~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~ 250 (330)
.-++.. ..-..+.|.-+|+++++.+.|. +|.+||..+... .... ......+.--.+.+|...++.++. .|
T Consensus 758 Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK--GD 835 (1012)
T KOG1445|consen 758 EGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK--GD 835 (1012)
T ss_pred cCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecC--CC
Confidence 544322 2345678888999998888664 588888765521 1111 111112222346778888888887 79
Q ss_pred CeEEEEEccCCCccceEeecCCCCe--EEEEEec
Q psy6213 251 SSVNVWDIRRPYIPLASFTEHKDVV--SGLAWRG 282 (330)
Q Consensus 251 ~~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~ 282 (330)
..|.+|.+-.....+..+..|..++ .+++|.+
T Consensus 836 ~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~ 869 (1012)
T KOG1445|consen 836 RFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQ 869 (1012)
T ss_pred ceEEEEEecCCCceeeecccccCCCcccceeeec
Confidence 9999999876543233333333222 3455544
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=152.52 Aligned_cols=241 Identities=17% Similarity=0.259 Sum_probs=181.0
Q ss_pred CCcccceEEEEeeCCC----e-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCc
Q psy6213 2 AYLSPVHKHGLKADNG----L-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA 75 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~----~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 75 (330)
+|.+.-+.++|+-|-. + +++| -|.|+|.|+.++++...+..|... |+.+.+.|.+.+++++++.|..
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s-------INeik~~p~~~qlvls~SkD~s 159 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS-------INEIKFHPDRPQLVLSASKDHS 159 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCcc-------chhhhcCCCCCcEEEEecCCce
Confidence 4677788888886533 4 5666 999999999999988777666554 5899999988899999999999
Q ss_pred EEEEECCCCCCCceeEEe---cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee------------------
Q psy6213 76 VVVWNLGQISRSKQERVF---NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK------------------ 134 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~------------------ 134 (330)
|++|++++ ..++..+ .+|...|.++.|++ ++.++++++.|.++++|+++..+...
T Consensus 160 vRlwnI~~---~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfp 235 (385)
T KOG1034|consen 160 VRLWNIQT---DVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFP 235 (385)
T ss_pred EEEEeccC---CeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCC
Confidence 99999998 6777665 47999999999998 88999999999999999997432111
Q ss_pred ----------eeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc-------------eeeeccCCCCeEEE-
Q psy6213 135 ----------IFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC-------------FYQFTAHSGPIFAC- 190 (330)
Q Consensus 135 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~~~i~~~- 190 (330)
+-..|...|-|+.|-- + ++++-+-++.|..|....-++. +..+.-....|.-+
T Consensus 236 t~~~~fp~fst~diHrnyVDCvrw~g--d-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfir 312 (385)
T KOG1034|consen 236 TPKTHFPDFSTTDIHRNYVDCVRWFG--D-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIR 312 (385)
T ss_pred ccccccccccccccccchHHHHHHHh--h-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEE
Confidence 1112445555666653 4 5788888889999987321211 12222223344444
Q ss_pred -EEcCCCCEEEEEecCCcEEEEeCCCCcccc-cee---ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 191 -DWHPEHAWLATASRDKTIKVWDLSIKPSLE-YSI---NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 191 -~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
+|.|-+++|+.|...|.+.+||++..+... ... .....|...+|+.|+..|++.+. |+.|.-||..
T Consensus 313 f~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd---d~~Vwrwdrv 383 (385)
T KOG1034|consen 313 FAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD---DGTVWRWDRV 383 (385)
T ss_pred EeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC---CCcEEEEEee
Confidence 456778999999999999999999875522 122 23567999999999999888885 9999999854
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-21 Score=166.02 Aligned_cols=290 Identities=13% Similarity=0.180 Sum_probs=205.7
Q ss_pred cceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeec-ccCCcEEEEEcCCCcEEEEECC
Q psy6213 6 PVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWS-CIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 6 ~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
+-..+.|+|-... +++. .-.|++||.+.++....+..... ....|+.+.+- .++..++++|+.||.|+||+-.
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~----~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAF----PDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCC----CCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 4566888988888 5555 77999999999988766654432 22336777764 3567799999999999999854
Q ss_pred CC--CCCceeEEecc-------cccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec-CCCCeEEEEEcCCC
Q psy6213 83 QI--SRSKQERVFND-------HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS-NTESVRDVEFNPHS 152 (330)
Q Consensus 83 ~~--~~~~~~~~~~~-------~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~ 152 (330)
.. ++.+.+..+.+ ..+.-.-+.|.. ...+|+++|.-..|+|||.........+.. ....++++.-+-..
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhh-hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 43 22333332221 112224466775 445555555578999999987766666543 33456777655444
Q ss_pred CcEEEEEecCCcEEEEecCCCcc--ceeeeccCCCC--eEEEEEcCCCC-EEEEEecCCcEEEEeCCCCccccc-ee-cc
Q psy6213 153 PYAFASVSENGTIQQWDVRRPEK--CFYQFTAHSGP--IFACDWHPEHA-WLATASRDKTIKVWDLSIKPSLEY-SI-NT 225 (330)
Q Consensus 153 ~~~~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~-~~ 225 (330)
..++++|..||.|++||.+.... .+...+.|... |..+.+.++|- .|++|+.||.|++||++....... .. .+
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 44899999999999999987543 56677888877 99999998765 499999999999999998522111 11 11
Q ss_pred ---ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEe-----ecCCCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 226 ---IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASF-----TEHKDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 226 ---~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
.+..+++..+++.+ ++|+++ .+.|+||++.......... ....+.+.+++|+|-.-++|+|+.|..|.
T Consensus 1301 ~~yGs~lTal~VH~hap-iiAsGs---~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAP-IIASGS---AQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred cccCccceeeeeccCCC-eeeecC---cceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence 23599999999998 588887 5999999997654311111 11235689999999999999999999999
Q ss_pred eeeccce
Q psy6213 298 RAKNIKI 304 (330)
Q Consensus 298 iw~~~~~ 304 (330)
||...+.
T Consensus 1377 iYs~~k~ 1383 (1387)
T KOG1517|consen 1377 IYSCEKP 1383 (1387)
T ss_pred EeecCCc
Confidence 9976553
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=136.74 Aligned_cols=281 Identities=13% Similarity=0.191 Sum_probs=190.6
Q ss_pred cceEEEEeeCCCeeecC--CCeEEEEEcCC---cceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 6 PVHKHGLKADNGLAQPS--RNVFKIFLIKD---TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g--d~~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.|.+-+++|.++++++| +|.|.+..+++ ++....-+...-....++.+++.++|. ..+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEee
Confidence 46677899999997777 99999998865 111111111111124456668999996 46777766 59999998
Q ss_pred CCCCCCCceeE-----Eeccc-----ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcC
Q psy6213 81 LGQISRSKQER-----VFNDH-----KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150 (330)
Q Consensus 81 ~~~~~~~~~~~-----~~~~~-----~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 150 (330)
.....+....+ ....| -..|+++...|..+..| .++.|+.++-||+++|+..+++++|.+.+.++.-..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 76532211110 11112 24688999999555544 445799999999999999999999999999998844
Q ss_pred CCCcEEEEEecCCcEEEEecCCCccceeeecc---------CC-CCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTA---------HS-GPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE 220 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 220 (330)
... .+++|++||++++||.++ .+.+..+.. |- ..|.+++- +..++++|+. ..+.+|.++.. ...
T Consensus 167 ~~~-qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrss-e~t 240 (325)
T KOG0649|consen 167 ANG-QILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSS-EST 240 (325)
T ss_pred cCc-ceeecCCCccEEEEeccc-cceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCC-Cce
Confidence 444 489999999999999998 555555432 22 23556655 4568887765 57999999988 444
Q ss_pred ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecC-CCEEEEeecCCeEeee
Q psy6213 221 YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGD-PQLFIASSRVSIIPRA 299 (330)
Q Consensus 221 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~iw 299 (330)
...+-..++..+.|..+ .+.+++ ..+.+.-|.+..-- ....+......++..|+.. -++|-.++..+.+.++
T Consensus 241 ~vfpipa~v~~v~F~~d---~vl~~G--~g~~v~~~~l~Gvl--~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 241 CVFPIPARVHLVDFVDD---CVLIGG--EGNHVQSYTLNGVL--QANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEEecccceeEeeeecc---eEEEec--cccceeeeeeccEE--EEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 55566788999999877 344444 47889999886432 1222222334556666543 3466667888899998
Q ss_pred eccce
Q psy6213 300 KNIKI 304 (330)
Q Consensus 300 ~~~~~ 304 (330)
+....
T Consensus 314 ~~~~~ 318 (325)
T KOG0649|consen 314 KDFRF 318 (325)
T ss_pred ecccc
Confidence 76543
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=159.54 Aligned_cols=244 Identities=19% Similarity=0.249 Sum_probs=181.1
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCC-----CCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEE
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQ-----ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d 126 (330)
..+..++|.| ....|++++.||.+.+|++.. ....+++.++.+|.++|.|+++.+ ++..+++|+-||+|+.|+
T Consensus 295 d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~ 372 (577)
T KOG0642|consen 295 DCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWN 372 (577)
T ss_pred hhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeec
Confidence 3467888998 889999999999999999932 223567788999999999999997 999999999999999996
Q ss_pred eecC----------ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCC
Q psy6213 127 IRCQ----------ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH 196 (330)
Q Consensus 127 ~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 196 (330)
+... .....+.+|.+.+..+++++...+ |++++.||+++.|+......+........+...++++-...
T Consensus 373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~ 451 (577)
T KOG0642|consen 373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSR 451 (577)
T ss_pred cCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccch
Confidence 6421 234567789999999999998885 89999999999999886433222222222344556654332
Q ss_pred -CEEEEEecCCcEEEEeCCCCccccceec-------cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEe
Q psy6213 197 -AWLATASRDKTIKVWDLSIKPSLEYSIN-------TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASF 268 (330)
Q Consensus 197 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~ 268 (330)
...++...-+.-.+++............ ....+..+.++|.+.. ..++. +++.|+++|..++.. +...
T Consensus 452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~-~~~~h--ed~~Ir~~dn~~~~~-l~s~ 527 (577)
T KOG0642|consen 452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADI-TFTAH--EDRSIRFFDNKTGKI-LHSM 527 (577)
T ss_pred hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCe-eEecc--cCCceeccccccccc-chhe
Confidence 2222222333333334333322211111 1245778899999986 45555 699999999999976 8888
Q ss_pred ecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 269 TEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 269 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
..|...++++++.|+|.+|++++.||.+++|+..
T Consensus 528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred eeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 9999999999999999999999999999999873
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-18 Score=149.71 Aligned_cols=280 Identities=23% Similarity=0.432 Sum_probs=211.2
Q ss_pred cceEEEE-eeCCC-eeec-C--CCeEEEEEcCC-cceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-CCcEEE
Q psy6213 6 PVHKHGL-KADNG-LAQP-S--RNVFKIFLIKD-TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-NGAVVV 78 (330)
Q Consensus 6 ~v~~~~~-s~~~~-~~~~-g--d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i 78 (330)
.+..+.+ ++++. .+.. + |+.+.+|+... .........+... +..++|+| ++..+++++. |+.+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~-~~~~~~~~~~~~~~~~~ 182 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSES-------VTSLAFSP-DGKLLASGSSLDGTIKL 182 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCccc-------EEEEEECC-CCCEEEecCCCCCceEE
Confidence 5666777 78888 4333 3 99999999987 4544444444333 57899999 8878888885 999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCC-EEEEEecCCcEEEEEeecCceee-eeecCCCCeEEEEEcCCCCcEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESN-WLISGSQDGTMRLFDIRCQESTK-IFHSNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~ 156 (330)
|+... ......+..|...+.+++|+| ++. .+++++.|+.|++||...+.... .+..|.... ...|+|++. .+
T Consensus 183 ~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 256 (466)
T COG2319 183 WDLRT---GKPLSTLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS-LL 256 (466)
T ss_pred EEcCC---CceEEeeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCC-EE
Confidence 99987 677778888999999999997 665 55666999999999988777777 577777765 448999996 57
Q ss_pred EEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee--ccccceEEEEE
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI--NTIASVSRIKW 234 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~ 234 (330)
++++.++.+++|+.+........+..|...+.++.|+|++..+++++.|+.+.+||........... .+...+..+.|
T Consensus 257 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (466)
T COG2319 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336 (466)
T ss_pred EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE
Confidence 8999999999999997554344446788999999999988888889999899999988775544443 55567899999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEE-eecCCeEeeeeccce
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIA-SSRVSIIPRAKNIKI 304 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~iw~~~~~ 304 (330)
.+++..+..+.. .++.+.+|++.... ........ ..+..+.+.+ ...+.. +..++.+.+|+....
T Consensus 337 ~~~~~~~~~~~~--~d~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 337 SPDGSLLVSGGS--DDGTIRLWDLRTGK-PLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred CCCCCEEEEeec--CCCcEEeeecCCCc-eeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccC
Confidence 433245555544 57999999998876 23333222 2288999988 544444 688999999986533
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-18 Score=135.11 Aligned_cols=277 Identities=16% Similarity=0.181 Sum_probs=191.7
Q ss_pred cccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC--CcEEEEE
Q psy6213 4 LSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN--GAVVVWN 80 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iw~ 80 (330)
...+..+.|+.|...++.| ....++|+.+..+..... ..-...|-.+-|+. .++|..+.+ ..+++++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~-------~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSK-------DTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVH 74 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcc-------cCCCeEEEEeeccc---ceeEEEecCCCceEEEEE
Confidence 3457788899999999999 666789988774431111 11112245555654 666655544 3488888
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC---CCCeEEEEEcCCCCcEEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN---TESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~ 157 (330)
+.. ...+..+. ...+|.++.++. +.|+++-.+ .|+|||+++.+.++++..- ...+.++.+++.+.++.+
T Consensus 75 ~Kk---~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAy 146 (391)
T KOG2110|consen 75 FKK---KTTICEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAY 146 (391)
T ss_pred ccc---CceEEEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEe
Confidence 876 44444433 457899999863 445555544 5999999999998887643 344555666666665433
Q ss_pred EEe-cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCc-EEEEeCCCCccccceecc--ccceEEEE
Q psy6213 158 SVS-ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKT-IKVWDLSIKPSLEYSINT--IASVSRIK 233 (330)
Q Consensus 158 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~--~~~v~~~~ 233 (330)
-++ ..|.|.+||..+ -++...+..|++++.+++|+++|.+||+++..|+ |||+.+.+++....+... ...|.+++
T Consensus 147 p~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~ 225 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLS 225 (391)
T ss_pred cCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEE
Confidence 333 368999999998 6788899999999999999999999999999998 899999999765554443 45789999
Q ss_pred EcCCCCeEEEEeecccCCeEEEEEccCCCcc------------------------------------ceEeecCCC---C
Q psy6213 234 WRPQRKFHLASCSLVVDSSVNVWDIRRPYIP------------------------------------LASFTEHKD---V 274 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~------------------------------------~~~~~~~~~---~ 274 (330)
|+|++++|.++++ .++|++|.++..... ......... .
T Consensus 226 Fs~ds~~L~~sS~---TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~ 302 (391)
T KOG2110|consen 226 FSPDSQFLAASSN---TETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKN 302 (391)
T ss_pred ECCCCCeEEEecC---CCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccc
Confidence 9999998666664 999999988642100 000011111 2
Q ss_pred eEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 275 VSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 275 v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+..+.-.+....+..++.||.++.|+..
T Consensus 303 ~~~l~~~~~~~~v~vas~dG~~y~y~l~ 330 (391)
T KOG2110|consen 303 ICSLSSIQKIPRVLVASYDGHLYSYRLP 330 (391)
T ss_pred eEEeeccCCCCEEEEEEcCCeEEEEEcC
Confidence 2222223477889999999999999754
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-20 Score=140.13 Aligned_cols=235 Identities=17% Similarity=0.230 Sum_probs=184.3
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee-cC
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR-CQ 130 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~ 130 (330)
.+|+|.+|++ ++..+|++.....|.||........+...++..|...|+.+.|+| ..+.|++++.|..-++|... .+
T Consensus 11 ~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 11 EPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred CceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCC
Confidence 3579999999 999999999999999999887555778889999999999999999 88899999999999999983 33
Q ss_pred --ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc---ceeeeccCCCCeEEEEEcCCCCEEEEEecC
Q psy6213 131 --ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK---CFYQFTAHSGPIFACDWHPEHAWLATASRD 205 (330)
Q Consensus 131 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 205 (330)
++...+..++...+++.|+|.++ .|++|+....|.+|-++.... ..+..+.+...|++++|+|++-+|++|+.|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 34445556888999999999998 699999999999998876322 122345677889999999999999999999
Q ss_pred CcEEEEeCC-----CCc-------------cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceE
Q psy6213 206 KTIKVWDLS-----IKP-------------SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLAS 267 (330)
Q Consensus 206 g~i~i~d~~-----~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~ 267 (330)
+..++|..- ..+ .+.......+.+..+.|+|+|..|...+. |..+.+-|...+.+.+..
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H---ds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH---DSTVSFVDAAGPSERVQS 244 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC---CCceEEeecCCCchhccc
Confidence 999998642 111 11222245678999999999998666664 999999999887643444
Q ss_pred eecCCCCeEEEEEecCCCEEEEeecC
Q psy6213 268 FTEHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 268 ~~~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
......+..++.|-.+.. ++.++.|
T Consensus 245 ~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCCc-eeecCCC
Confidence 444447788888865443 4444455
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=131.56 Aligned_cols=234 Identities=13% Similarity=0.199 Sum_probs=170.1
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCC-------CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEE
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQI-------SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d 126 (330)
|.+-+|+| .+++|++|..+|.|.+..+... .....+...+.|++++..++|. ..+|++|+ ||.|+-|.
T Consensus 13 vf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 13 VFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEee
Confidence 46678999 9999999999999999998641 1123344457899999999997 45677776 59999997
Q ss_pred eecCce------eeeee-------cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEc
Q psy6213 127 IRCQES------TKIFH-------SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWH 193 (330)
Q Consensus 127 ~~~~~~------~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 193 (330)
-+.... +...+ ..-..|+++...|..+. ++.++.|+.++.||+++ ++..+.+++|.+.+.++.--
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~-G~i~r~~rGHtDYvH~vv~R 165 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLED-GRIQREYRGHTDYVHSVVGR 165 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecC-CEEEEEEcCCcceeeeeeec
Confidence 653321 11111 11235889999998886 55555899999999998 78889999999999999985
Q ss_pred CCCCEEEEEecCCcEEEEeCCCCccccceec---------c-ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 194 PEHAWLATASRDKTIKVWDLSIKPSLEYSIN---------T-IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 194 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
.....+++|+.||++|+||.++.+....... + ...|.+++-+.+ + ++.++ ...+.+|+++..+.
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed--W-lvCGg---Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED--W-LVCGG---GPKLSLWHLRSSES 239 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc--e-EEecC---CCceeEEeccCCCc
Confidence 5566799999999999999999866433222 1 234556655544 4 55554 78999999998764
Q ss_pred cceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccce
Q psy6213 264 PLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 264 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 304 (330)
...+. -.+++..+.|.. ..+++++..+.+.-|.....
T Consensus 240 -t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 240 -TCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred -eEEEe-cccceeEeeeec--ceEEEeccccceeeeeeccE
Confidence 44443 356788888854 46777787777888865433
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-20 Score=157.17 Aligned_cols=251 Identities=16% Similarity=0.279 Sum_probs=185.1
Q ss_pred cccceEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCC--cEEEEEcCCCcEEE
Q psy6213 4 LSPVHKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEE--NHIATGATNGAVVV 78 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~i 78 (330)
..+|+|++|+|.... +++| +|.|.+||+..+......... .....+..+|+.+.|.. +. .-+++++.||.|..
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls-~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS-ALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICS 319 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc-cccccCCcCeEEEEEec-cCCCCceEEEecCCcEee
Confidence 468999999998887 7777 999999999987652111111 22334456689999976 33 45899999999999
Q ss_pred EECCCCCCCceeEEe---c------ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce--------eeeeecCCC
Q psy6213 79 WNLGQISRSKQERVF---N------DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES--------TKIFHSNTE 141 (330)
Q Consensus 79 w~~~~~~~~~~~~~~---~------~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~ 141 (330)
|+++........... . .....+++++|.+.+...+++|+.+|.|.-=+-...+. ...+..|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 988753221111111 1 12346889999998999999999999998744332221 234556889
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCC-CEEEEEecCCcEEEEeCCCCcc--
Q psy6213 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIKPS-- 218 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-- 218 (330)
+|+++.++|-+..+|++++ |.++++|.......++..+..+...+++++|||.. ..|+++..||.+.+||+.....
T Consensus 400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred ceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 9999999999987666666 99999999884477788888888889999999954 5788888999999999976532
Q ss_pred ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 219 LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 219 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
...........+.+.|+++|+. ++.+. ..|.+.+|++..
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~-lavGd--~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKL-LAVGD--ANGTTHILKLSE 517 (555)
T ss_pred cccccccccccceeecCCCCcE-EEEec--CCCcEEEEEcCc
Confidence 2222223566788889999996 66666 699999999964
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-19 Score=145.59 Aligned_cols=246 Identities=14% Similarity=0.163 Sum_probs=160.7
Q ss_pred cccceEEEEeeCCCee-ecC--CCeEEEEEcCC-cceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-CCcEEE
Q psy6213 4 LSPVHKHGLKADNGLA-QPS--RNVFKIFLIKD-TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-NGAVVV 78 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~-~~g--d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~i 78 (330)
.+....++++|+++++ +++ ++.|.+|+++. +.+....... .......++|+| +++++++++. ++.|.+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v 106 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------LPGSPTHISTDH-QGRFLFSASYNANCVSV 106 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec------CCCCceEEEECC-CCCEEEEEEcCCCeEEE
Confidence 3567789999999984 333 89999999973 3332211111 111246899999 8887777654 789999
Q ss_pred EECCCCCCC-ceeEEecccccceeEEEEEecCCCEEE-EEecCCcEEEEEeecCceeee-----ee-cCCCCeEEEEEcC
Q psy6213 79 WNLGQISRS-KQERVFNDHKRTVNKVSFHYVESNWLI-SGSQDGTMRLFDIRCQESTKI-----FH-SNTESVRDVEFNP 150 (330)
Q Consensus 79 w~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~-----~~-~~~~~v~~~~~~~ 150 (330)
|++++.... .....+. +......++++| ++++++ +...++.|.+||+++...+.. .. ........++|+|
T Consensus 107 ~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p 184 (330)
T PRK11028 107 SPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP 184 (330)
T ss_pred EEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC
Confidence 999752211 2222222 234567788998 666665 555679999999976332211 11 1234467899999
Q ss_pred CCCcEEEEEecCCcEEEEecCCC-c--cceeeeccC------CCCeEEEEEcCCCCEEEEEec-CCcEEEEeCCCCcccc
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRP-E--KCFYQFTAH------SGPIFACDWHPEHAWLATASR-DKTIKVWDLSIKPSLE 220 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~-~--~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~ 220 (330)
++++++++...++.|.+||++.. + +.+..+..+ ......+.++|++++++++.. ++.|.+|++.......
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~ 264 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL 264 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE
Confidence 99965455445899999999742 1 122222211 122346889999999988864 7899999986543222
Q ss_pred cee---ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 221 YSI---NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 221 ~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
... ........+.++|+|++++++.. .++.|.+|++..
T Consensus 265 ~~~~~~~~~~~p~~~~~~~dg~~l~va~~--~~~~v~v~~~~~ 305 (330)
T PRK11028 265 SFEGHQPTETQPRGFNIDHSGKYLIAAGQ--KSHHISVYEIDG 305 (330)
T ss_pred EEeEEEeccccCCceEECCCCCEEEEEEc--cCCcEEEEEEcC
Confidence 111 22235668899999999888776 689999998853
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=154.98 Aligned_cols=263 Identities=15% Similarity=0.191 Sum_probs=208.9
Q ss_pred ceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 7 VHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
-+.+.++.+|+. +..| .|.+..+|+.++++...+... ..|.++.|-. +.+++|++- ...+.|||-.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~--------Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD~~-- 199 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM--------ETVRDVTFLH-NEQFFAVAQ-KKYVYVYDNN-- 199 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehh--------hhhhhhhhhc-chHHHHhhh-hceEEEecCC--
Confidence 356889999999 6666 999999999998877655433 2368899987 888888875 4579999865
Q ss_pred CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 85 SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
+..+..++.| ..|..+.|.| .--+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+. ++-+|..+|+
T Consensus 200 --GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGt 274 (545)
T KOG1272|consen 200 --GTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGT 274 (545)
T ss_pred --CcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eEEEcCCCce
Confidence 4566666655 6788999999 778889999999999999999999999998889999999999888 7899999999
Q ss_pred EEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEE
Q psy6213 165 IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLAS 244 (330)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 244 (330)
|.+|.... ..++..+..|.++|.++++.++|++++|.+.|..++|||+++...+..... ..+...+++|..| ++|.
T Consensus 275 VSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~ 350 (545)
T KOG1272|consen 275 VSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLAL 350 (545)
T ss_pred EEecCCCC-cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceee
Confidence 99999988 667777778999999999999999999999999999999999865444433 6678889999887 4555
Q ss_pred eecccCCeEEEEEc-cCC----CccceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 245 CSLVVDSSVNVWDI-RRP----YIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 245 ~~~~~~~~i~i~d~-~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
+- ...+.||.= -.+ ..|.. -....++|.++.|.|-...|-.|-..|
T Consensus 351 ~~---G~~v~iw~d~~~~s~~~~~pYm-~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 351 SY---GDHVQIWKDALKGSGHGETPYM-NHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred ec---CCeeeeehhhhcCCCCCCcchh-hhccCcccccceeccHHHeeeccccCC
Confidence 53 788999953 221 11111 112235899999999666666555544
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=165.23 Aligned_cols=271 Identities=18% Similarity=0.240 Sum_probs=212.5
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|..+|+|+.|...|.++.+| |..++||..+++.+......|.+. ++.++.+. ++.++++++.|..|++|
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d-------itdlavs~-~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGD-------ITDLAVSS-NNTMIAAASNDKVIRVW 259 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccc-------cchhccch-hhhhhhhcccCceEEEE
Confidence 588999999999999996666 999999999999988877777655 48888887 88899999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee----e-cCCCCeEEEEEcCCCCc
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF----H-SNTESVRDVEFNPHSPY 154 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~-~~~~~v~~~~~~~~~~~ 154 (330)
.+.. +.++..+.+|++.|++++|+| ..+.+.||++++||.+ ...+... + ....-+.++.|...+.
T Consensus 260 rl~~---~~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~- 329 (1113)
T KOG0644|consen 260 RLPD---GAPVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGD- 329 (1113)
T ss_pred ecCC---CchHHHHhccccceeeeccCc-----cccCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccc-
Confidence 9998 888999999999999999999 3378889999999987 2221111 1 1234567777888777
Q ss_pred EEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCccccceeccccceEEEE
Q psy6213 155 AFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIK 233 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 233 (330)
-+++++.|+.-..|.+.. +..+...+.-+.++.+ ..+.+++-.+..+.+|++.++........+...+..+.
T Consensus 330 ~f~Tgs~d~ea~n~e~~~-------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd 402 (1113)
T KOG0644|consen 330 RFLTGSRDGEARNHEFEQ-------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD 402 (1113)
T ss_pred ccccccCCcccccchhhH-------hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeee
Confidence 489999999888887653 1112222222222222 24667777888899999999988888888999999999
Q ss_pred EcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 234 WRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
++|-+..+..+.+ .||...|||+-.+........+| ..+..-+|++||..++....-|.++|..
T Consensus 403 ~Hpfn~ri~msag--~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 403 VHPFNPRIAMSAG--YDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred ecCCCcHhhhhcc--CCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEec
Confidence 9999988777877 79999999998875533333454 5677779999999999888889999874
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=137.11 Aligned_cols=277 Identities=12% Similarity=0.178 Sum_probs=192.6
Q ss_pred EEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC
Q psy6213 9 KHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS 87 (330)
Q Consensus 9 ~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 87 (330)
-++|||+|+++++. +-.+.|-|.++-+..+.+..- ..|..+.|..+....|.....++.|.+|++.. .
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cl--------dki~yieW~ads~~ilC~~yk~~~vqvwsl~Q---p 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCL--------DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ---P 81 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHH--------HHhhheeeeccceeeeeeeeccceEEEEEeec---c
Confidence 46899999997777 888889898887665544431 12467889883444555667888999999988 6
Q ss_pred ceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe-cC----
Q psy6213 88 KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS-EN---- 162 (330)
Q Consensus 88 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~d---- 162 (330)
.-...+......+..++|+|++..+|.+...+-.|.+|.+.+.+.... +..+..+..++|+|+|++ .+..+ .|
T Consensus 82 ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f-~ai~sRrDCkdy 159 (447)
T KOG4497|consen 82 EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQF-CAILSRRDCKDY 159 (447)
T ss_pred eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCce-eeeeecccHHHH
Confidence 666777778899999999994447777888899999999987765443 223445688899999985 33332 11
Q ss_pred -------------------------------CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 163 -------------------------------GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 163 -------------------------------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
.-+.+||.--.. .+.... -.-.+..++|+|.+++|++|+.|+.+|+.
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley-kv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY-KVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhh-eeeeee-eccceeEEEeccccceEEeeccchhhhhh
Confidence 223344422101 111111 22468899999999999999999999886
Q ss_pred eCCCCcc------------------------------------------------------------ccc------eecc
Q psy6213 212 DLSIKPS------------------------------------------------------------LEY------SINT 225 (330)
Q Consensus 212 d~~~~~~------------------------------------------------------------~~~------~~~~ 225 (330)
+--+.+. ... ....
T Consensus 238 nh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP 317 (447)
T KOG4497|consen 238 NHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP 317 (447)
T ss_pred ceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc
Confidence 5321100 000 0001
Q ss_pred ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 226 ~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
...+..++|++|..| +++-+...-+.+.+||+++.+. ...-....+|....|+|....|+.+.....+++|.+..
T Consensus 318 k~g~g~lafs~Ds~y-~aTrnd~~PnalW~Wdlq~l~l--~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTY-AATRNDKYPNALWLWDLQNLKL--HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred ccccceeeecCCceE-EeeecCCCCceEEEEechhhhh--hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 234667999999987 6666533557899999998764 33333456899999999988999998888999998654
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-19 Score=139.42 Aligned_cols=195 Identities=21% Similarity=0.315 Sum_probs=153.1
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeee
Q psy6213 101 NKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQF 180 (330)
Q Consensus 101 ~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~ 180 (330)
..++|++ ++..+++++.||++|+|+..+...+.....|...|.++.|+||++ ++++.+.| ..++|+.+++ ..+...
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g-~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTG-AALARK 223 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccC-chhhhc
Confidence 6789997 889999999999999999888888877888999999999999999 68888888 8999999984 444433
Q ss_pred c--cCCCCeEEEEEcCCC---C--EEEEEecCCcEEEEeCCCCcc-----ccceeccccceEEEEEcCCCCeEEEEeecc
Q psy6213 181 T--AHSGPIFACDWHPEH---A--WLATASRDKTIKVWDLSIKPS-----LEYSINTIASVSRIKWRPQRKFHLASCSLV 248 (330)
Q Consensus 181 ~--~~~~~i~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 248 (330)
. ..+.....+.|+.++ . .++....-+.|+.||+..... ..........+++++.+++|++ ++.++
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf-~AlGT-- 300 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF-LALGT-- 300 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE-EEEec--
Confidence 3 223345677787766 2 233333456677777654432 2222233568999999999997 55555
Q ss_pred cCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 249 VDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 249 ~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+|.|.|++..+.+......+.|...|+.+.|+||.+++++.+.|....+.+..
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 699999999998887666778899999999999999999999999999988654
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-18 Score=146.95 Aligned_cols=286 Identities=16% Similarity=0.222 Sum_probs=191.8
Q ss_pred eEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCC-CC
Q psy6213 8 HKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ-IS 85 (330)
Q Consensus 8 ~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~ 85 (330)
.++.+++.|.+...- +..+.+|+...+. ...........+.+.+++.+++| +++++|+|..||+|.+|.--. ..
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~---~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~ 239 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHT---KHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSD 239 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccc---eeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEecccccc
Confidence 567888888885555 8889999988755 11122222334455579999999 999999999999999997433 23
Q ss_pred CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcE
Q psy6213 86 RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTI 165 (330)
Q Consensus 86 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i 165 (330)
.......+.-|..+|.+++|++ +|.+|++||..|.+.+|.+.+++ .+-+..-.++|..+.++|++. +.+....|..|
T Consensus 240 ~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI 316 (792)
T KOG1963|consen 240 DSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQI 316 (792)
T ss_pred ccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC-eEEEEecCceE
Confidence 3445566778999999999998 99999999999999999999988 444555778999999999999 57888889999
Q ss_pred EEEecCCCcc--ceeeec--------cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc-----------------
Q psy6213 166 QQWDVRRPEK--CFYQFT--------AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS----------------- 218 (330)
Q Consensus 166 ~i~d~~~~~~--~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------------- 218 (330)
.+....+... .+.-+. ...+-.+.++++|.-+.++-.+..|.|.+||+.+.+.
T Consensus 317 ~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 317 HLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred EEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 9887643110 000010 1122344555566444455555556666665533211
Q ss_pred ---------------------------------------------------ccceeccccceEEEEE-cCCCCeEEEEee
Q psy6213 219 ---------------------------------------------------LEYSINTIASVSRIKW-RPQRKFHLASCS 246 (330)
Q Consensus 219 ---------------------------------------------------~~~~~~~~~~v~~~~~-~~~~~~l~~~~~ 246 (330)
.....+|...+...++ ++.....+++++
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~ 476 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS 476 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec
Confidence 0111123223333333 333331355555
Q ss_pred cccCCeEEEEEccCCCc---------cceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 247 LVVDSSVNVWDIRRPYI---------PLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 247 ~~~~~~i~i~d~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
.||.+++|-+...+. +...-.-|..++++++|+.||. +++++.|+.|.+|+..+
T Consensus 477 --~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 477 --VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred --cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence 699999999843321 1222224678999999999996 55577899999998665
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-19 Score=151.88 Aligned_cols=236 Identities=14% Similarity=0.115 Sum_probs=158.0
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC---CcEEEEECCCCCCCceeEEecccccc
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN---GAVVVWNLGQISRSKQERVFNDHKRT 99 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~ 99 (330)
+..|.+||.+.... ..+..+ ...+...+|+| +++.|+..+.+ ..|.+||+.+.. .+.+..+.+ .
T Consensus 183 ~~~i~i~d~dg~~~-~~lt~~-------~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~-~~~l~~~~g---~ 249 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIVNRS-------SQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGA-RKVVASFRG---H 249 (429)
T ss_pred eEEEEEECCCCCCc-eEeccC-------CCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCc-eEEEecCCC---c
Confidence 46899999876543 222211 12258899999 99988887654 369999997621 223333333 3
Q ss_pred eeEEEEEecCCCEEEEE-ecCCcEEEE--EeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc
Q psy6213 100 VNKVSFHYVESNWLISG-SQDGTMRLF--DIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC 176 (330)
Q Consensus 100 i~~i~~~~~~~~~l~~~-~~d~~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 176 (330)
...++|+| +++.|+.+ +.+|.+.+| |+.+++ ...+..+...+....|+|+++.+++++..+|...+|++......
T Consensus 250 ~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 250 NGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred cCceeECC-CCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 44689999 78777765 467776655 555554 44455566678899999999976666667888888887653333
Q ss_pred eeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEE
Q psy6213 177 FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW 256 (330)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~ 256 (330)
...+ .+.. ....|+|+|++|+..+.++ +.+||+.+++....... .....+.|+|+|+.++.+.. ++...+|
T Consensus 328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~---~g~~~~l 398 (429)
T PRK01742 328 ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST---QGLGKVL 398 (429)
T ss_pred eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc---CCCceEE
Confidence 3333 3333 4678999999998888765 66699987743322111 23356789999998666664 7777777
Q ss_pred Ecc--CCCccceEeecCCCCeEEEEEecC
Q psy6213 257 DIR--RPYIPLASFTEHKDVVSGLAWRGD 283 (330)
Q Consensus 257 d~~--~~~~~~~~~~~~~~~v~~~~~~~~ 283 (330)
++. ++.. ...+..|.+.+...+|+|-
T Consensus 399 ~~~~~~G~~-~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 399 QLVSADGRF-KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEECCCCc-eEEccCCCCCCCCcccCCC
Confidence 753 3433 6777788888999999984
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-19 Score=134.03 Aligned_cols=229 Identities=15% Similarity=0.217 Sum_probs=174.7
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
.++|+|.+|++|+..++.+ ...|.||.....+.-... +....++..|+.++|+| ..+.|++++.|..-++|..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~----htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPA----HTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceec----eehhhhCcceeEEeecC-CCCceeEccCCCCcccccc
Confidence 4789999999999996666 779999998876622221 11222334479999999 9999999999999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce----eeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES----TKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
..+...++...+..+....+++.|+| .++.|++|+.-..|.+|-++..+- .+.-+...+.|+++.|+|++- +++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-Lla 162 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLA 162 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eec
Confidence 66666788888888999999999999 899999999999999998875432 122334667899999999998 799
Q ss_pred EEecCCcEEEEecC-----CC------------ccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc-c
Q psy6213 158 SVSENGTIQQWDVR-----RP------------EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS-L 219 (330)
Q Consensus 158 ~~~~dg~i~i~d~~-----~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~ 219 (330)
+|+.|+..++|..- .. ++.+..+....+.+..+.|+|+|..|+-.+.|+.+.+=|.....+ .
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence 99999999998642 10 111223334567899999999999999999999999999877743 2
Q ss_pred cceeccccceEEEEEcCCCC
Q psy6213 220 EYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 220 ~~~~~~~~~v~~~~~~~~~~ 239 (330)
.......-+..++.|-.+..
T Consensus 243 ~~~~~~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 243 QSVATAQLPLLSVSWISENS 262 (361)
T ss_pred cchhhccCCceeeEeecCCc
Confidence 22222335666666655443
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-19 Score=136.85 Aligned_cols=192 Identities=22% Similarity=0.346 Sum_probs=153.5
Q ss_pred cEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEec-CCCEEEEEecCCcEEEEEeecCceeeeee--cCC-
Q psy6213 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV-ESNWLISGSQDGTMRLFDIRCQESTKIFH--SNT- 140 (330)
Q Consensus 65 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~- 140 (330)
+.+|++...|.|++||..+ ++.+..++++...++.+.|... .++.+.+|+.||+|++||++.......+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~t---g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT---GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccc---hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC
Confidence 6788999999999999998 7888899999999999999753 57889999999999999999876554443 333
Q ss_pred CCeEEEEEcCCCCcEEEEEec----CCcEEEEecCCCcccee-eeccCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCC
Q psy6213 141 ESVRDVEFNPHSPYAFASVSE----NGTIQQWDVRRPEKCFY-QFTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLS 214 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 214 (330)
.+..+++..-.+. ++++|.. +-.|.+||.|...+++. ....|...|+++.|+| +.++|++|+.||.+.+||++
T Consensus 118 ~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 118 TPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 4567777665565 6777753 56799999998776444 4567999999999999 55799999999999999998
Q ss_pred CCcc---ccceeccccceEEEEEcCCC-CeEEEEeecccCCeEEEEEccCCCc
Q psy6213 215 IKPS---LEYSINTIASVSRIKWRPQR-KFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 215 ~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
.... +...+.+...|.++.|..++ +.+.... ......+|+++.+..
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT---H~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT---HMETFAIYELEDGSE 246 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEE---ccCceeEEEccCCCh
Confidence 7643 55666778889999999988 2234444 499999999987764
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-18 Score=130.78 Aligned_cols=281 Identities=11% Similarity=0.186 Sum_probs=186.2
Q ss_pred cceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCC
Q psy6213 6 PVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83 (330)
Q Consensus 6 ~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 83 (330)
.+..++|++.-.- ++++ |..|++|+-.. .....++..... .|++++|-|.....|++|+..| |.+|..+.
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQr------nvtclawRPlsaselavgCr~g-IciW~~s~ 171 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQR------NVTCLAWRPLSASELAVGCRAG-ICIWSDSR 171 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhc------ceeEEEeccCCcceeeeeecce-eEEEEcCc
Confidence 4677899983322 4444 99999999776 333333322222 2699999997788899998765 99998764
Q ss_pred CCCCc-----------eeEEecccccceeEEEEEecCCCEEEEEec-CCcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 84 ISRSK-----------QERVFNDHKRTVNKVSFHYVESNWLISGSQ-DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 84 ~~~~~-----------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
..... .+....+| .+|+++.|.+ ++..+++++. |..|.+||..++..+.......+.+.-+.|+|+
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd 249 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD 249 (445)
T ss_pred ccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence 22111 11222344 7899999998 7888888765 678999999998877665445677899999999
Q ss_pred CCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccce---------
Q psy6213 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYS--------- 222 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------- 222 (330)
+.+ ++++.-|+..++|+..+......-.. ..+.|...+|+|+|+.|+.... |.-++|.+.-..+....
T Consensus 250 gd~-lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~ 326 (445)
T KOG2139|consen 250 GDV-LFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRV 326 (445)
T ss_pred CCE-EEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceee
Confidence 995 77788899999996654333333332 3458999999999997766554 44555554322110000
Q ss_pred ---------------eccccceEEEEEcCCCCeEEEEeecc-----cCCeEEEEEccCCCccceEee--c--CCCCeEEE
Q psy6213 223 ---------------INTIASVSRIKWRPQRKFHLASCSLV-----VDSSVNVWDIRRPYIPLASFT--E--HKDVVSGL 278 (330)
Q Consensus 223 ---------------~~~~~~v~~~~~~~~~~~l~~~~~~~-----~~~~i~i~d~~~~~~~~~~~~--~--~~~~v~~~ 278 (330)
.-..+++.+++|.|.|+++++.-.+. ....|.+||.+... ...+. + .......+
T Consensus 327 lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp--~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 327 LLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP--PVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC--ceEEEecccccCCCCceE
Confidence 00136788999999999977665410 01346677776543 22222 1 11235567
Q ss_pred EEec---CCCEEEEeecCCeEeeeec
Q psy6213 279 AWRG---DPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 279 ~~~~---~~~~l~s~~~dg~i~iw~~ 301 (330)
.|+| ++.+|..+=..|.+.-|..
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeee
Confidence 7777 7778888888888877643
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=150.46 Aligned_cols=233 Identities=16% Similarity=0.266 Sum_probs=177.6
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
.|..++|-| +|..|+.+.. ..+.+||... +....++++|++.|.+++|+. +|..+++|+.|..|.+|+-+- +-
T Consensus 14 ci~d~afkP-DGsqL~lAAg-~rlliyD~nd---G~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~kl-EG 86 (1081)
T KOG1538|consen 14 CINDIAFKP-DGTQLILAAG-SRLLVYDTSD---GTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKL-EG 86 (1081)
T ss_pred chheeEECC-CCceEEEecC-CEEEEEeCCC---cccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccc-cc
Confidence 368999999 8887777654 4799999988 888999999999999999997 999999999999999998642 22
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEe
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 212 (330)
+..+. |.+.|.|+.|+|-.. .+++++- ...-+|.... +.+...+ ....+.+.+|..||++++.|-.+|+|.+-+
T Consensus 87 ~LkYS-H~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~q--K~V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 87 ILKYS-HNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQ--KSVSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred eeeec-cCCeeeEeecCchHH-Hhhhcch-hhccccChhh--hhHHhhh-hheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 33343 889999999999987 4777664 3467887764 2222222 345788999999999999999999999986
Q ss_pred CCCCcc--ccceeccccceEEEEEcCCCC----eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCE
Q psy6213 213 LSIKPS--LEYSINTIASVSRIKWRPQRK----FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQL 286 (330)
Q Consensus 213 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~----~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 286 (330)
-...+. +....+..++|.+++|+|... -+++... ...++.+|.+.... +..-+.-.-...++.+.++|.+
T Consensus 161 k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~LsG~~--Igk~r~L~FdP~CisYf~NGEy 236 (1081)
T KOG1538|consen 161 KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLSGKQ--IGKDRALNFDPCCISYFTNGEY 236 (1081)
T ss_pred CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEeccee--ecccccCCCCchhheeccCCcE
Confidence 544333 223334678999999999742 3466666 67888888876432 2222233445678999999999
Q ss_pred EEEeecCCeEeeeecc
Q psy6213 287 FIASSRVSIIPRAKNI 302 (330)
Q Consensus 287 l~s~~~dg~i~iw~~~ 302 (330)
+..|+.|+.+.+|...
T Consensus 237 ~LiGGsdk~L~~fTR~ 252 (1081)
T KOG1538|consen 237 ILLGGSDKQLSLFTRD 252 (1081)
T ss_pred EEEccCCCceEEEeec
Confidence 9999999999998643
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=134.66 Aligned_cols=229 Identities=15% Similarity=0.226 Sum_probs=161.5
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC---
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ--- 130 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~--- 130 (330)
+..++|++ .-..++++..|-.|++|+-.. ......-......|++++|-|.....|+.|+.. -|.+|.....
T Consensus 101 lr~~aWhq-H~~~fava~nddvVriy~kss---t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 101 LRGVAWHQ-HIIAFAVATNDDVVRIYDKSS---TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred eeeEeech-hhhhhhhhccCcEEEEeccCC---CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 57789998 777889999999999999765 222222233457899999999888889999875 5999976421
Q ss_pred -ce----------eeeeecCCCCeEEEEEcCCCCcEEEEE-ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCE
Q psy6213 131 -ES----------TKIFHSNTESVRDVEFNPHSPYAFASV-SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAW 198 (330)
Q Consensus 131 -~~----------~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 198 (330)
.. +....+| .+|++++|.+||.. ++++ -.|..|.+||..++. .+.......+.++-+.|+||+.+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~-l~tAS~gsssi~iWdpdtg~-~~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI-LVTASFGSSSIMIWDPDTGQ-KIPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCE-EeecccCcceEEEEcCCCCC-cccccccCCCceeeEEEcCCCCE
Confidence 11 1112223 68999999999985 5554 457789999999843 33333345678899999999999
Q ss_pred EEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc--------------
Q psy6213 199 LATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP-------------- 264 (330)
Q Consensus 199 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~-------------- 264 (330)
|++++-|+..++|+...........-..+.|...+|+|+|++|+.+++ .+. ++|.+.-..++
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s--gsp--~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS--GSP--RLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc--CCc--eEEEEeecCCCccccCcccceeeee
Confidence 999999999999965544333333334459999999999999999886 343 44443221110
Q ss_pred ceEee------c---CCCCeEEEEEecCCCEEEEeecCC
Q psy6213 265 LASFT------E---HKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 265 ~~~~~------~---~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
+..+. + -.+++.+++|+|.|.+||+.-..+
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 00110 1 135789999999999999875544
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-20 Score=148.88 Aligned_cols=257 Identities=18% Similarity=0.202 Sum_probs=183.4
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCC------cceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKD------TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN 73 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 73 (330)
.|.+.|++++|.|.... +++. ||.+++|+++. ......+.+ ..+..+|.|++..+ ++..+++|+-|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-----raH~gPVl~v~v~~-n~~~~ysgg~D 365 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-----RAHEGPVLCVVVPS-NGEHCYSGGID 365 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-----ecccCceEEEEecC-CceEEEeeccC
Confidence 47788999999998887 6666 99999999943 122222222 23445679999999 99999999999
Q ss_pred CcEEEEECCCCC-------CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec--CCCCeE
Q psy6213 74 GAVVVWNLGQIS-------RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS--NTESVR 144 (330)
Q Consensus 74 g~i~iw~~~~~~-------~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~ 144 (330)
|+|+.|++.... .......+.+|.+.++.+++++ ....|++++.||+++.|+.....+ .++.. ..+...
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999999764211 1234456789999999999997 778899999999999999876655 33332 223345
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc-------CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCc
Q psy6213 145 DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA-------HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKP 217 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 217 (330)
++.+-.......++...-+.-.++++.. ...+..+.. ....+.-+.++|.+.+.+++..|+.|+++|..++.
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhh-hhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 5655544422233333333333444443 222222221 12457788999999999999999999999999998
Q ss_pred cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC
Q psy6213 218 SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH 271 (330)
Q Consensus 218 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 271 (330)
.+.....|...++++++.|+|.+++ +++ .|+.+++|.+..... +.....|
T Consensus 523 ~l~s~~a~~~svtslai~~ng~~l~-s~s--~d~sv~l~kld~k~~-~~es~~~ 572 (577)
T KOG0642|consen 523 ILHSMVAHKDSVTSLAIDPNGPYLM-SGS--HDGSVRLWKLDVKTC-VLESTAH 572 (577)
T ss_pred cchheeeccceecceeecCCCceEE-eec--CCceeehhhccchhe-eeccccc
Confidence 8888888999999999999999855 444 599999999876644 4444444
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=142.58 Aligned_cols=197 Identities=17% Similarity=0.237 Sum_probs=152.4
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK 134 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 134 (330)
.+++|++ ++..+++|+.||.+|+|+... ...+.....|.+.|.++.|+| ++..|++-+.| ..++|+.+++..+.
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps---~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPS---MLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCc---chhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhh
Confidence 6789998 999999999999999999876 666777788999999999999 99999999999 99999999997666
Q ss_pred eeec--CCCCeEEEEEcCCC---Cc-EEEEEecCCcEEEEecCCCcc----ceeeeccCCCCeEEEEEcCCCCEEEEEec
Q psy6213 135 IFHS--NTESVRDVEFNPHS---PY-AFASVSENGTIQQWDVRRPEK----CFYQFTAHSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 135 ~~~~--~~~~v~~~~~~~~~---~~-~~~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
.... .......+.|+.++ .. +++.....+.|+.||+..... ...+.......|++++.+++|++++.|+.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 5542 23446677887766 22 333334456677777654222 22222233457999999999999999999
Q ss_pred CCcEEEEeCCCCccccce-eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 205 DKTIKVWDLSIKPSLEYS-INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 205 dg~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
||.|-|++....+..... ..|...|+.+.|+|+.+++.... .+....+..+.-
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS---s~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS---SDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc---cCCceeEEEEee
Confidence 999999999988664443 34778999999999999855544 488888877764
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=140.90 Aligned_cols=208 Identities=17% Similarity=0.246 Sum_probs=151.0
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccC-CcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE-ENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~i 78 (330)
.|++-|+|++|+.||.+|++| |-.+.|||.-..+++..+. .+.. ..|.++.|-|.. +..+++|..|..|++
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHt----aNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHT----ANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccc----cceeEEeeeccCCCeEEEeccCcceEEE
Confidence 599999999999999998877 8999999998665554332 2222 235899999844 457788999999999
Q ss_pred EECCCCCC-------CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce----------eeeeecCCC
Q psy6213 79 WNLGQISR-------SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES----------TKIFHSNTE 141 (330)
Q Consensus 79 w~~~~~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~ 141 (330)
+|+...+. ......+..|...|..++-.|...+.+.+++.||+|+-+|++.... +..+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99985221 2344556789999999999996669999999999999999986321 111112223
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc-----------------ceeeec-cCC-----------CCeEEEEE
Q psy6213 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK-----------------CFYQFT-AHS-----------GPIFACDW 192 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-----------------~~~~~~-~~~-----------~~i~~~~~ 192 (330)
...|+..+|..+++|++|+.|-..++||.+...+ ++..+. +|. ..++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 5679999999999999999999999999543111 111111 121 12567889
Q ss_pred cCCCCEEEEEecCCcEEEEeCCC
Q psy6213 193 HPEHAWLATASRDKTIKVWDLSI 215 (330)
Q Consensus 193 ~~~~~~l~~~~~dg~i~i~d~~~ 215 (330)
+|+|.-|+..-....|+++|+..
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecC
Confidence 99998776665556788888753
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=140.31 Aligned_cols=227 Identities=18% Similarity=0.328 Sum_probs=171.7
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC------ceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEE
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS------KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d 126 (330)
++..+.|.+...+.+++|+.|..|++|.+...... .....+..|...|+++.|+| ++++|++|+.+|.|.+|-
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWK 93 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEE
Confidence 36888898845559999999999999998753322 23456778999999999999 999999999999999997
Q ss_pred ee--------c--------CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEE
Q psy6213 127 IR--------C--------QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFAC 190 (330)
Q Consensus 127 ~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~ 190 (330)
.. + ....+.+.+|...+..++|+|++. .+++++.|..+++||+.. +.....+..|...+..+
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGV 171 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEecc-ceeEeecccccccccee
Confidence 65 2 122455667889999999999999 599999999999999998 77788888999999999
Q ss_pred EEcCCCCEEEEEecCCcEEEEeCCCCccccce-------------------ecc----ccceEEEEEcCCCCeEEEEeec
Q psy6213 191 DWHPEHAWLATASRDKTIKVWDLSIKPSLEYS-------------------INT----IASVSRIKWRPQRKFHLASCSL 247 (330)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------~~~----~~~v~~~~~~~~~~~l~~~~~~ 247 (330)
+|.|-++++++-+.|...+.+.+...+..... .-| ..-...++|+|+|..++.-++-
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 99999999999999987777776544221100 011 1235568999999965543220
Q ss_pred ------ccCCeEEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 248 ------VVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 248 ------~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
..-+..++|+-...+.|...+.....+...+.|+|
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~p 292 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSP 292 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeee
Confidence 01234566766666666777777777777777766
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=146.86 Aligned_cols=287 Identities=12% Similarity=0.157 Sum_probs=186.5
Q ss_pred CcccceEEEEeeCCCeeecC--CCeEEEEEcCC--cceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS--RNVFKIFLIKD--TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
|.-.++|.++||+++++++| ||.|.+|.--. +.......+|-+. ..|++++|++ +|.+|++|+.+|.+.+
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~-----~~V~~L~fS~-~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH-----DEVNSLSFSS-DGAYLLSGGREGVLVL 277 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc-----cccceeEEec-CCceEeecccceEEEE
Confidence 67778999999999998888 99999995332 2222222233221 2269999999 9999999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec-----------CCCCeEEEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS-----------NTESVRDVE 147 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~v~~~~ 147 (330)
|.+++ ++ .+-++.-.++|..+.++| ++++.+....|+.|.+....+.+...++.+ ..+-.+.++
T Consensus 278 Wq~~T---~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~ 352 (792)
T KOG1963|consen 278 WQLET---GK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVS 352 (792)
T ss_pred EeecC---CC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEE
Confidence 99998 33 445566778999999998 888888888899999997755443332221 122345566
Q ss_pred EcCCCCcEEEEEecCCcEEEEecCCCc-----------------------------------------------------
Q psy6213 148 FNPHSPYAFASVSENGTIQQWDVRRPE----------------------------------------------------- 174 (330)
Q Consensus 148 ~~~~~~~~~~~~~~dg~i~i~d~~~~~----------------------------------------------------- 174 (330)
++|..+ .++-.+..|.|.+||+.+..
T Consensus 353 idpr~~-~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~ 431 (792)
T KOG1963|consen 353 IDPRTN-SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVS 431 (792)
T ss_pred EcCCCC-ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEE
Confidence 666433 35555666667766654321
Q ss_pred ----------c----ceeeeccCCCCeEEEEEcC-CC-CEEEEEecCCcEEEEeCCCCcc----------ccceeccccc
Q psy6213 175 ----------K----CFYQFTAHSGPIFACDWHP-EH-AWLATASRDKTIKVWDLSIKPS----------LEYSINTIAS 228 (330)
Q Consensus 175 ----------~----~~~~~~~~~~~i~~~~~~~-~~-~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~ 228 (330)
+ ......+|...+...++.+ .. ..+++++.||.+++|-+...+. .....-+..+
T Consensus 432 LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~ 511 (792)
T KOG1963|consen 432 LKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTP 511 (792)
T ss_pred EEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCc
Confidence 0 0011234555555555543 22 3789999999999998843321 1111125788
Q ss_pred eEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecC--CCEEEEeecCCeEeeeecccee
Q psy6213 229 VSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGD--PQLFIASSRVSIIPRAKNIKIF 305 (330)
Q Consensus 229 v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~iw~~~~~~ 305 (330)
++.++|+.||.. ++.+. ++.|.+||..+..........-..++..+.+... ....+.....+.+.+|...+..
T Consensus 512 i~a~~fs~dGsl-la~s~---~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~ 586 (792)
T KOG1963|consen 512 ITALCFSQDGSL-LAVSF---DDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMS 586 (792)
T ss_pred ccchhhcCCCcE-EEEec---CCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhh
Confidence 999999999984 66654 9999999998854323333322333444433321 1123344557788889866443
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=143.54 Aligned_cols=289 Identities=13% Similarity=0.155 Sum_probs=216.9
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeec-eeeccccccccceeeeeeccc-CCcEEEEEcCCCcEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHN-LRVGKNINLNFSCNDVAWSCI-EENHIATGATNGAVV 77 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~ 77 (330)
.|.+.|+.+.|+..|..+++| |..|.+||+..+..+..+. .|... |....|-|. +..-+++++.||.++
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~N-------vfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNN-------VFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccc-------hhhhhccCCCCCcCceeccccCcee
Confidence 489999999999999997766 9999999999877554433 22222 244456663 345688899999999
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee---cCCC---CeEEEEEcCC
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH---SNTE---SVRDVEFNPH 151 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~---~v~~~~~~~~ 151 (330)
+=.+...+.......+..|.++|..++.-|.....|.+++.|+.+.-+|++...+...+. .+.. ....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 988766444444566778999999999999888999999999999999998876544332 2222 4678999999
Q ss_pred CCcEEEEEecCCcEEEEecCCCccc-----eeeecc------CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc--
Q psy6213 152 SPYAFASVSENGTIQQWDVRRPEKC-----FYQFTA------HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS-- 218 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~~~~~~-----~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-- 218 (330)
..+.+++++.|-.+++||.+.-.+. +..+-. ..-.|++++|+.++.-|+++-.|-.|+++.-..+.-
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 9988999999999999998753221 222222 234699999998887788888888999995432211
Q ss_pred ----------ccc-eecc--ccceEEEEE-cCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCC
Q psy6213 219 ----------LEY-SINT--IASVSRIKW-RPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDP 284 (330)
Q Consensus 219 ----------~~~-~~~~--~~~v~~~~~-~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 284 (330)
... ..+| ...|..+-| -|..+| +++++ +-|.|.||+-.+++. +..+.+-..-|+|+.-+|--
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy-VvSGS--DCGhIFiW~K~t~ei-i~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY-VVSGS--DCGHIFIWDKKTGEI-IRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccce-EEecC--ccceEEEEecchhHH-HHHhhcccceEeccCCCCCC
Confidence 011 2233 233666654 577776 77777 689999999988876 67777666689999999999
Q ss_pred CEEEEeecCCeEeeeec
Q psy6213 285 QLFIASSRVSIIPRAKN 301 (330)
Q Consensus 285 ~~l~s~~~dg~i~iw~~ 301 (330)
..||++|-|..|+||.+
T Consensus 449 PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTP 465 (559)
T ss_pred chhhccCCccceeeecC
Confidence 99999999999999976
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-19 Score=144.43 Aligned_cols=205 Identities=14% Similarity=0.211 Sum_probs=158.2
Q ss_pred eeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEeccc
Q psy6213 18 LAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDH 96 (330)
Q Consensus 18 ~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 96 (330)
++.++ ||.+.|.+- .++.......|.+. +.+-.|+| +|.-|+++++||.|++|.-.. -...++...
T Consensus 78 ~~i~s~DGkf~il~k-~~rVE~sv~AH~~A-------~~~gRW~~-dGtgLlt~GEDG~iKiWSrsG----MLRStl~Q~ 144 (737)
T KOG1524|consen 78 LLICSNDGRFVILNK-SARVERSISAHAAA-------ISSGRWSP-DGAGLLTAGEDGVIKIWSRSG----MLRSTVVQN 144 (737)
T ss_pred EEEEcCCceEEEecc-cchhhhhhhhhhhh-------hhhcccCC-CCceeeeecCCceEEEEeccc----hHHHHHhhc
Confidence 35666 999988874 35555555555544 47889999 999999999999999998654 444455567
Q ss_pred ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc
Q psy6213 97 KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC 176 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 176 (330)
..+|.|++|.|+..+.+++.+ +.+.+=-+.....+...+.|.+-|.++.|++..+ ++++|++|-..++||.. +..
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~--G~~ 219 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ--GAN 219 (737)
T ss_pred CceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeeccc--Ccc
Confidence 789999999996666666665 4566666665666777889999999999999998 89999999999999976 566
Q ss_pred eeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEE
Q psy6213 177 FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW 256 (330)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~ 256 (330)
+..-..|..+|++++|+|+ +.++.++. ++++ ...+..+.|..++|++||..+..+++ .|.+.+-
T Consensus 220 Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~---~G~v~~A 283 (737)
T KOG1524|consen 220 LFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR-----------FSSPRVGSIFNLSWSADGTQATCGTS---TGQLIVA 283 (737)
T ss_pred cccCChhccceeeeeeccc-cceeeeee-eeee-----------ecCCCccceEEEEEcCCCceeecccc---CceEEEe
Confidence 7777889999999999999 66776665 3555 22234578999999999998554444 7766543
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=135.99 Aligned_cols=249 Identities=16% Similarity=0.208 Sum_probs=186.3
Q ss_pred ccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC---CCCceeEEec-ccccceeEEEEEecCCCEEEEEecCCcE
Q psy6213 47 NINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI---SRSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQDGTM 122 (330)
Q Consensus 47 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i 122 (330)
+..+..-|+++.|+. ++++|++|+.|..+++|+++.. ...+++.... .|...|.|++|.. ....+++|+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 344555579999998 8999999999999999998651 1234444443 3558999999996 88899999999999
Q ss_pred EEEEeecCceeeeeec--CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceee--eccCCCCeEEEEEcCC-CC
Q psy6213 123 RLFDIRCQESTKIFHS--NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ--FTAHSGPIFACDWHPE-HA 197 (330)
Q Consensus 123 ~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~ 197 (330)
...|+++.+.+..+.. ..+.|+.+..+|..+ +|++.+.++.|.+||.+....+... .........++.|+|. ..
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 9999999988877753 235899999999976 7999999999999999874433332 2234456788999995 46
Q ss_pred EEEEEecCCcEEEEeCCCCccccceecc-------ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec
Q psy6213 198 WLATASRDKTIKVWDLSIKPSLEYSINT-------IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE 270 (330)
Q Consensus 198 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 270 (330)
+|++.+..+-+-+||.+........... ...-..+.|+|+|..+++.-- ...-.+||+-+..+++.....
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR---~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR---GKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc---cCCCEEeeeecccceeEeccC
Confidence 7888888899999999887543322211 223356889999998666653 556677888876665554431
Q ss_pred CC------CCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 271 HK------DVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 271 ~~------~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.. ..+.+++|..|. -+++|+.+-.|++|+..
T Consensus 286 N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLP 322 (609)
T ss_pred CCCcceeeeeeeeeeeecce-eeeccCcccceEEEecC
Confidence 11 256778887554 49999999999999854
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-18 Score=147.43 Aligned_cols=212 Identities=13% Similarity=0.086 Sum_probs=145.1
Q ss_pred CCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC---CcEEEEEeecCceeeeeecCCCCeEEEEEc
Q psy6213 73 NGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD---GTMRLFDIRCQESTKIFHSNTESVRDVEFN 149 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 149 (330)
+..|.+||.+. .. ...+..+...+...+|+| +++.|+.++.+ ..|++||+.+++.... ....+....++|+
T Consensus 183 ~~~i~i~d~dg---~~-~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDG---FN-QFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCC---CC-ceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeEC
Confidence 46899999875 22 345566778899999999 88888877654 3699999987754322 2222334578999
Q ss_pred CCCCcEEEEEecCCcEEEE--ecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCccccceeccc
Q psy6213 150 PHSPYAFASVSENGTIQQW--DVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPSLEYSINTI 226 (330)
Q Consensus 150 ~~~~~~~~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~ 226 (330)
|+|+.++++.+.+|.+.+| |+.+ .....+..+...+....|+|||+.|+..+ .+|...+|++...........+.
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~ 334 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANG--GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR 334 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCC--CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC
Confidence 9999655555678876655 5544 33455666777788999999999777555 57888888765432222222222
Q ss_pred cceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
. ....|+|+|+++++++. + .+.+||+.++.. . .+..+ .....+.|+|||++|+.++.+|...+|..
T Consensus 335 ~--~~~~~SpDG~~ia~~~~---~-~i~~~Dl~~g~~-~-~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 335 G--YSAQISADGKTLVMING---D-NVVKQDLTSGST-E-VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred C--CCccCCCCCCEEEEEcC---C-CEEEEECCCCCe-E-EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 2 45789999998655543 4 466699988764 2 22221 13456789999999999999998888764
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-17 Score=127.55 Aligned_cols=234 Identities=14% Similarity=0.191 Sum_probs=173.6
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC--cEEEEEeecCc
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG--TMRLFDIRCQE 131 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~ 131 (330)
+..+.|+. +...|..|+.|| .++|+.+.. ............|..+-|+ ..++|..+.+. .+++++++.+.
T Consensus 8 i~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~---~k~~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 8 INFIGFNQ-DSTLLSVGSKDG-YKIFSCSPF---EKCFSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred eeeeeecc-ceeEEEccCCCc-eeEEecCch---HHhhcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccCc
Confidence 45666887 889999999998 788888762 2211112222345555554 46666665543 49999998888
Q ss_pred eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec---cCCCCeEEEEEcCCCCEEEEEe--cCC
Q psy6213 132 STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT---AHSGPIFACDWHPEHAWLATAS--RDK 206 (330)
Q Consensus 132 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~--~dg 206 (330)
.+..+. ...+|.++.++.+. +++.=+ ..|+|||+++ -+.++++. .+...+.++.+++.+.+++.-+ ..|
T Consensus 80 ~ICe~~-fpt~IL~VrmNr~R---LvV~Le-e~IyIydI~~-MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 80 TICEIF-FPTSILAVRMNRKR---LVVCLE-ESIYIYDIKD-MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred eEEEEe-cCCceEEEEEccce---EEEEEc-ccEEEEeccc-ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 887776 56789999988763 444433 3499999998 45555554 3455566777777777887644 568
Q ss_pred cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCC-eEEEEEccCCCccceEeecCC--CCeEEEEEecC
Q psy6213 207 TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDS-SVNVWDIRRPYIPLASFTEHK--DVVSGLAWRGD 283 (330)
Q Consensus 207 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~ 283 (330)
.|.+||..+.+.......|.+++.+++|+++|.. +|+++ +.| .||++.+.++++ +.+++.-. ..|.+++|+|+
T Consensus 154 dV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~l-lATAS--eKGTVIRVf~v~~G~k-l~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAHKGPLAALAFSPDGTL-LATAS--EKGTVIRVFSVPEGQK-LYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred eEEEEEcccceeeeEEEecCCceeEEEECCCCCE-EEEec--cCceEEEEEEcCCccE-eeeeeCCceeeEEEEEEECCC
Confidence 8999999999888888889999999999999996 77777 444 589999999987 66665433 46899999999
Q ss_pred CCEEEEeecCCeEeeeecccee
Q psy6213 284 PQLFIASSRVSIIPRAKNIKIF 305 (330)
Q Consensus 284 ~~~l~s~~~dg~i~iw~~~~~~ 305 (330)
+++|++.|..++|++|+..+..
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCeEEEecCCCeEEEEEecccc
Confidence 9999999999999999976544
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-16 Score=121.14 Aligned_cols=275 Identities=13% Similarity=0.168 Sum_probs=180.7
Q ss_pred cceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEE-EEcCC------CcEE
Q psy6213 6 PVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIA-TGATN------GAVV 77 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~d------g~i~ 77 (330)
...+++|+.|..-++++ |.-.+||+.+.-+.........+. ..+..+-|- .++|| +|+.+ ..+.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G-----~~~veMLfR---~N~laLVGGg~~pky~pNkvi 78 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGG-----FKIVEMLFR---SNYLALVGGGSRPKYPPNKVI 78 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCc-----hhhhhHhhh---hceEEEecCCCCCCCCCceEE
Confidence 35568999998888888 999999999873322111111111 112333332 34444 44433 4699
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee-cCceeeeeecCC--CCeEEEEEcCCCCc
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR-CQESTKIFHSNT--ESVRDVEFNPHSPY 154 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~--~~v~~~~~~~~~~~ 154 (330)
|||=.. .+++..+. ...+|.++.+.+ ..+++.- .+.|++|... +.+.++.+.... ....++.-..+...
T Consensus 79 IWDD~k---~~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 79 IWDDLK---ERCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred EEeccc---CcEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 999433 56665554 568999999874 4455555 5689999987 556666665432 23333333323332
Q ss_pred EEEEEecCCcEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEecCCc-EEEEeCCCCccccceec--cccceE
Q psy6213 155 AFASVSENGTIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLATASRDKT-IKVWDLSIKPSLEYSIN--TIASVS 230 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~v~ 230 (330)
+..-|-.-|.|++-|+..... ....+.+|.+.|.+++.+-+|.++|+++..|+ |||||..+++.+..... ....+.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 222355679999999986433 35778899999999999999999999999998 89999999976555443 357899
Q ss_pred EEEEcCCCCeEEEEeecccCCeEEEEEccCCCccce-----------------------EeecCCCCeEEEEEecCCCEE
Q psy6213 231 RIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA-----------------------SFTEHKDVVSGLAWRGDPQLF 287 (330)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~~~~l 287 (330)
+++|+|+..+| +..+ +.|+++|+.++....... .++-..++..-++|-.+.+.+
T Consensus 231 ~iaFSp~~s~L-avsS--dKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsv 307 (346)
T KOG2111|consen 231 CIAFSPNSSWL-AVSS--DKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTV 307 (346)
T ss_pred EEEeCCCccEE-EEEc--CCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeE
Confidence 99999999984 4444 599999999875331111 111123344556666665666
Q ss_pred EEeecCCeEeee
Q psy6213 288 IASSRVSIIPRA 299 (330)
Q Consensus 288 ~s~~~dg~i~iw 299 (330)
+..+.||.-+-+
T Consensus 308 i~i~~Dgsy~k~ 319 (346)
T KOG2111|consen 308 IAICADGSYYKF 319 (346)
T ss_pred EEEEeCCcEEEE
Confidence 666677765544
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=139.98 Aligned_cols=249 Identities=15% Similarity=0.224 Sum_probs=163.9
Q ss_pred ceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeee-----cccCCcEEEEEcCCCcEEEEE
Q psy6213 7 VHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAW-----SCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~l~~~~~dg~i~iw~ 80 (330)
+....++-.|.++.-. ...+.+|+...+..... .+.. .... ....+|=+| .| ++--++.|-.-|.+.+.|
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~-pi~k-~~y~-gt~P~cHdfn~~~a~~-~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSK-PIDK-REYK-GTSPTCHDFNSFTATP-KGLDLLIGFTTGQVQLID 201 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhcc-chhh-hccc-CCCCceecccccccCC-CCcceEEeeccCceEEec
Confidence 3444455556666655 77788888874221110 0000 0000 001133333 23 556677888889999998
Q ss_pred CCCCCCCceeEEe----cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEE
Q psy6213 81 LGQISRSKQERVF----NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 81 ~~~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 156 (330)
... ....+.+ .-.+..++++.|-|.+..+++++-.+|.+++||.+.. .+... .+-...+++. .+
T Consensus 202 p~~---~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~~t~--p~~~~~k~~~-~f 269 (636)
T KOG2394|consen 202 PIN---FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CGATA--PSYQALKDGD-QF 269 (636)
T ss_pred chh---hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc------ccCCC--CcccccCCCC-ee
Confidence 765 1111111 1234789999999988889999999999999997211 00111 1112223444 23
Q ss_pred EEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcC
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRP 236 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 236 (330)
... .|--.....++..+.--.+.|+..+|+|||++||+.+.||.+||||..+.+.+-......+...|++|+|
T Consensus 270 ~i~-------t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 270 AIL-------TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred EEe-------eeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 322 2211221244555554567899999999999999999999999999998866555556678899999999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
||+| +++++ +|.-|.||.+...+. +..-++|...|..++|+|
T Consensus 343 DGKy-IvtGG--EDDLVtVwSf~erRV-VARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 343 DGKY-IVTGG--EDDLVTVWSFEERRV-VARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CccE-EEecC--CcceEEEEEeccceE-EEeccccccceeeEeecc
Confidence 9998 55555 699999999998876 888899999999999983
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-19 Score=143.34 Aligned_cols=213 Identities=23% Similarity=0.394 Sum_probs=161.5
Q ss_pred ccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEe-cccccceeEEEEEec-CCCEEEEEecCCcEEEEE
Q psy6213 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVF-NDHKRTVNKVSFHYV-ESNWLISGSQDGTMRLFD 126 (330)
Q Consensus 49 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~-~~~~l~~~~~d~~i~i~d 126 (330)
++..-|++++|+. +|.+|++|+.|-.+.|||.-. .+.+..+ .+|...|.+++|-|- +.+++++|..|..|+++|
T Consensus 48 GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~---~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 48 GHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFE---YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred cccceecceeecC-CCCEEeecCCcceEEeecchh---cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 3445579999999 999999999999999999875 4555444 589999999999983 456788999999999999
Q ss_pred eecC----------ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeee---------ccCCCCe
Q psy6213 127 IRCQ----------ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQF---------TAHSGPI 187 (330)
Q Consensus 127 ~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~~i 187 (330)
+... +....+..|...|..++-.|++++.+.++++||+++-+|++.+..+.... ....-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9842 33455566888999999999998899999999999999999744322211 1122346
Q ss_pred EEEEEcCC-CCEEEEEecCCcEEEEeCCCCcc------------------ccceec-c-----------ccceEEEEEcC
Q psy6213 188 FACDWHPE-HAWLATASRDKTIKVWDLSIKPS------------------LEYSIN-T-----------IASVSRIKWRP 236 (330)
Q Consensus 188 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~------------------~~~~~~-~-----------~~~v~~~~~~~ 236 (330)
.++..+|. ..+|++|+.|-..++||.+.... +....+ | ...++-++|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 78999995 46899999999999999432210 111100 0 01256789999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCccceEe
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASF 268 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~ 268 (330)
+|..++++-+ ...|+++|+..++.+...+
T Consensus 284 NGtElLvs~~---gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 284 NGTELLVSWG---GEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred CCcEEEEeeC---CeEEEEEeecCCCCceeec
Confidence 9999898886 8899999999887654444
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=136.73 Aligned_cols=277 Identities=11% Similarity=0.185 Sum_probs=196.5
Q ss_pred CCcccceEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
.|...-+.|..+|||+| +++| .-.|++||+.+-.+...-.+... +..+..-.++-..++.-..|..|.+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae--------~V~feiLsDD~SK~v~L~~DR~Ief 120 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAE--------VVDFEILSDDYSKSVFLQNDRTIEF 120 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccccc--------ceeEEEeccchhhheEeecCceeee
Confidence 57788899999999999 8888 99999999987544322211111 1222221124444555566777765
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
-.... ...... -...-..++++.....+++.|+ ...|+-++++.|..+..+....+.++++..++... +|++
T Consensus 121 Hak~G---~hy~~R---IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~ 192 (703)
T KOG2321|consen 121 HAKYG---RHYRTR---IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLAC 192 (703)
T ss_pred hhhcC---eeeeee---cCcCCccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccc-eEEe
Confidence 43321 111111 1233456677654555555555 45799999999999999988889999999999887 8999
Q ss_pred EecCCcEEEEecCCCccceeee------ccCCC-----CeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee-ccc
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQF------TAHSG-----PIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI-NTI 226 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~------~~~~~-----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~ 226 (330)
|+.+|.|..||.+... .+..+ ..|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+.+.... ...
T Consensus 193 Gt~~g~VEfwDpR~ks-rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e 271 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKS-RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE 271 (703)
T ss_pred cccCceEEEecchhhh-hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence 9999999999999733 23222 22333 39999999999999999999999999999985543332 235
Q ss_pred cceEEEEEcCCC-CeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 227 ASVSRIKWRPQR-KFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 227 ~~v~~~~~~~~~-~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
-+|..+.|.+.+ +.-+++.. ...++|||-.+++. ...+. ....++.+++-|++.+++++-.++.+..|-
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~D---k~~~kiWd~~~Gk~-~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSMD---KRILKIWDECTGKP-MASIE-PTSDLNDFCFVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred cceeeecccccCCCceEEecc---hHHhhhcccccCCc-eeecc-ccCCcCceeeecCCceEEEecCCCcceeEE
Confidence 688999997752 22466664 88999999999875 44443 345699999999999999999998887764
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=147.41 Aligned_cols=289 Identities=18% Similarity=0.225 Sum_probs=189.3
Q ss_pred CCCcccceEEEEeeCC-Ce-eecC-CCeEEEEEcCCccee-----eeeceeeccccccccceeeeeecccCCcEEEEEcC
Q psy6213 1 MAYLSPVHKHGLKADN-GL-AQPS-RNVFKIFLIKDTEFV-----ETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT 72 (330)
Q Consensus 1 ~~H~~~v~~~~~s~~~-~~-~~~g-d~~i~iw~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 72 (330)
+.|.+.|..++.++.. .+ ++++ ||+|++|+...-... .....+. ....+.++...+ .++.+|+++.
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-----~~sr~~~vt~~~-~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-----EGSRVEKVTMCG-NGDQFAVSTK 1118 (1431)
T ss_pred hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-----cCCceEEEEecc-CCCeEEEEcC
Confidence 4688999999998876 77 5555 999999998752211 1111111 233467888888 9999999999
Q ss_pred CCcEEEEECCCCCCCc----eeEEecccc-c-ceeEEEEEecCCC-EEEEEecCCcEEEEEeecCceeeeeec--CCCCe
Q psy6213 73 NGAVVVWNLGQISRSK----QERVFNDHK-R-TVNKVSFHYVESN-WLISGSQDGTMRLFDIRCQESTKIFHS--NTESV 143 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~----~~~~~~~~~-~-~i~~i~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v 143 (330)
||.|++.+++..+..+ +......+. + .+..-+|....+. .++.+..-+.|..||++.......++. ..+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 9999999987621111 111112221 2 2333344433444 788888899999999987766555443 45789
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec-cCCCCeEEEEEcCC---CCEEEEEe--cCCcEEEEeCCCCc
Q psy6213 144 RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT-AHSGPIFACDWHPE---HAWLATAS--RDKTIKVWDLSIKP 217 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~---~~~l~~~~--~dg~i~i~d~~~~~ 217 (330)
++++.+|.+. .++.|+..|.+.+||++= +.++.... ++..+++.+..+|- ....++++ ..+.+.+|++.++.
T Consensus 1199 TSi~idp~~~-WlviGts~G~l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1199 TSIVIDPWCN-WLVIGTSRGQLVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred eEEEecCCce-EEEEecCCceEEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 9999999999 599999999999999996 44444332 45578888888773 24444444 56789999998874
Q ss_pred cccceecc-------------------ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc--------------
Q psy6213 218 SLEYSINT-------------------IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP-------------- 264 (330)
Q Consensus 218 ~~~~~~~~-------------------~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~-------------- 264 (330)
+....... .-......+...+..++.+++ |..|+.||...+...
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs---d~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS---DMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC---ccceeeccCCCcccccccccCcccccccc
Confidence 32211111 111222333334444455554 999999997643211
Q ss_pred ---------------------------------ceE--------eecCCCCeEEEEEec-CCCEEEEeecCCeEeeee
Q psy6213 265 ---------------------------------LAS--------FTEHKDVVSGLAWRG-DPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 265 ---------------------------------~~~--------~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~ 300 (330)
... -..|..+|++|++.. +..+|++++.||.|++|+
T Consensus 1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 013566788888766 346899999999999995
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=130.12 Aligned_cols=268 Identities=16% Similarity=0.205 Sum_probs=193.1
Q ss_pred ccceEEEEeeCCCe---eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 5 SPVHKHGLKADNGL---AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 5 ~~v~~~~~s~~~~~---~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
..|.+++|.-|++. +.+. +..+..+.++...+.....-- .....-..+|..++. .+..|++|-.+|.+.+|.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~-~~~~l~~~~I~gl~~---~dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDA-KTVSLGTKSIKGLKL---ADGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccc-cccccccccccchhh---cCCEEEEEecCCcEEEEe
Confidence 46778888887776 3332 777888887776655443100 000011122334443 345677778899999999
Q ss_pred CCCCCC-CceeEEecccccceeEEEEEecCCCEEEEEecC--CcEEEEEeecCceeeeeecC---------CCCeEEEEE
Q psy6213 81 LGQISR-SKQERVFNDHKRTVNKVSFHYVESNWLISGSQD--GTMRLFDIRCQESTKIFHSN---------TESVRDVEF 148 (330)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~---------~~~v~~~~~ 148 (330)
.+.+.. ......+..+ ..+..+.-++.....+++|+.. ..+.+||+++.+++..-+.- .-.++++.|
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 875221 1222233322 5666777777677888889998 89999999988655444321 124678888
Q ss_pred cCC-CCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc-eeccc
Q psy6213 149 NPH-SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY-SINTI 226 (330)
Q Consensus 149 ~~~-~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~ 226 (330)
-+. ..+.|++++.-+.+++||.+...+++..+.-...+++++...|+++++++|..-|.+..||++.+..... ..+..
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 876 1347999999999999999998889999988899999999999999999999999999999999976555 56678
Q ss_pred cceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
+.++++..+|.+++ +++++ .|..+||+|+.+.+.....+- ...++++.+.+
T Consensus 291 Gsirsih~hp~~~~-las~G--LDRyvRIhD~ktrkll~kvYv--Ks~lt~il~~~ 341 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPV-LASCG--LDRYVRIHDIKTRKLLHKVYV--KSRLTFILLRD 341 (412)
T ss_pred CCcceEEEcCCCce-EEeec--cceeEEEeecccchhhhhhhh--hccccEEEecC
Confidence 99999999999996 77777 799999999998654322222 34566777755
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-16 Score=121.83 Aligned_cols=270 Identities=14% Similarity=0.204 Sum_probs=186.0
Q ss_pred cceEEEEeeCCCeeecC---CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCC-cEEEEEcCCCcEEEEEC
Q psy6213 6 PVHKHGLKADNGLAQPS---RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEE-NHIATGATNGAVVVWNL 81 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~ 81 (330)
.|.-+.|..|..++.|+ ++.|.+|++...+....+..... ++.+++||| ++ ..|.+...+-+|.+|.+
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a-------gls~~~WSP-dgrhiL~tseF~lriTVWSL 121 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA-------GLSSISWSP-DGRHILLTSEFDLRITVWSL 121 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC-------cceeeeECC-CcceEeeeecceeEEEEEEe
Confidence 46668899998886565 99999999998776655443322 258899999 66 66677788999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC------------------------------------CcEEEE
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD------------------------------------GTMRLF 125 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d------------------------------------~~i~i~ 125 (330)
.+ +....++-.+..+..++|+| ++++.+.++.- ..+.+|
T Consensus 122 ~t----~~~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVw 196 (447)
T KOG4497|consen 122 NT----QKGYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVW 196 (447)
T ss_pred cc----ceeEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEe
Confidence 87 22233343445668888998 88877766532 223344
Q ss_pred EeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCC---------------c----------------
Q psy6213 126 DIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP---------------E---------------- 174 (330)
Q Consensus 126 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~---------------~---------------- 174 (330)
|---.-.+..++ -.-.+..++|+|.++ +++.|+.|+.+++.+--+- .
T Consensus 197 d~~Leykv~aYe-~~lG~k~v~wsP~~q-flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~ 274 (447)
T KOG4497|consen 197 DNVLEYKVYAYE-RGLGLKFVEWSPCNQ-FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLH 274 (447)
T ss_pred cchhhheeeeee-eccceeEEEeccccc-eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcc
Confidence 321111111222 224588899999998 6999999999988652110 0
Q ss_pred ----------------------------------cceeeeccCCCCeEEEEEcCCCCEEEEEecC--CcEEEEeCCCCcc
Q psy6213 175 ----------------------------------KCFYQFTAHSGPIFACDWHPEHAWLATASRD--KTIKVWDLSIKPS 218 (330)
Q Consensus 175 ----------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~ 218 (330)
++...+......+.-++|++|..++++-... +.+-+||++.. +
T Consensus 275 ~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l-~ 353 (447)
T KOG4497|consen 275 HCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL-K 353 (447)
T ss_pred cccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh-h
Confidence 0000011123356789999999988887542 56999999987 4
Q ss_pred ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeE
Q psy6213 219 LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSII 296 (330)
Q Consensus 219 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 296 (330)
+........+|....|+|....+++..+ ...+++|....... +. .....-.|..+.|..+|..++-++.|..-
T Consensus 354 l~avLiQk~piraf~WdP~~prL~vctg---~srLY~W~psg~~~-V~-vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 354 LHAVLIQKHPIRAFEWDPGRPRLVVCTG---KSRLYFWAPSGPRV-VG-VPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred hhhhhhhccceeEEEeCCCCceEEEEcC---CceEEEEcCCCceE-Ee-cCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 4555556789999999999998666655 78899999887543 32 33334689999999999999999999743
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=144.23 Aligned_cols=250 Identities=21% Similarity=0.309 Sum_probs=171.2
Q ss_pred ccceEEEEeeCCCe---eecC-CCeEEEEEcCC-c----ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCc
Q psy6213 5 SPVHKHGLKADNGL---AQPS-RNVFKIFLIKD-T----EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA 75 (330)
Q Consensus 5 ~~v~~~~~s~~~~~---~~~g-d~~i~iw~~~~-~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 75 (330)
..|+.+.+-.+... ++++ ||.|+||+-.. + +++..+..-.+........-.-++|.. ...+|++++.-..
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-QSGHLLVTGDVRS 1188 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh-hCCeEEecCCeeE
Confidence 45788887654433 6666 99999996432 2 222222111111111111114467887 4455555555789
Q ss_pred EEEEECCCCCCCceeEEec-ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc---eeeeeecCCCC--eEEEEEc
Q psy6213 76 VVVWNLGQISRSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE---STKIFHSNTES--VRDVEFN 149 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~--v~~~~~~ 149 (330)
|+|||... ......+. +....++++.-+-..++.+++|..||.|++||.+... .+...+.|+.. |..+.+.
T Consensus 1189 IRIWDa~~---E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1189 IRIWDAHK---EQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred EEEEeccc---ceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence 99999987 44444433 3445677776654468999999999999999987543 36667778776 9999999
Q ss_pred CCCCcEEEEEecCCcEEEEecCCC-ccceeeeccCC--C-CeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc------
Q psy6213 150 PHSPYAFASVSENGTIQQWDVRRP-EKCFYQFTAHS--G-PIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL------ 219 (330)
Q Consensus 150 ~~~~~~~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~--~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------ 219 (330)
+.|-.-+++|+.+|.|++||++.. .........|. + ..+++..+++...+|+|+. +.|+||++......
T Consensus 1266 ~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~ 1344 (1387)
T KOG1517|consen 1266 RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNP 1344 (1387)
T ss_pred cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCc
Confidence 877656999999999999999983 22222333332 3 5999999999999999998 89999998765331
Q ss_pred cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 220 EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 220 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
.+.....+.+.+++|+|-.-. +++++ .|..|.||...++.
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~l-lAaG~--~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLL-LAAGS--ADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccccCcCCCcceeeecchhHh-hhhcc--CCceEEEeecCCcC
Confidence 112223467899999999875 55555 69999999887654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-17 Score=139.07 Aligned_cols=238 Identities=13% Similarity=0.104 Sum_probs=152.9
Q ss_pred CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC---CcEEEEECCCCCCCceeEEecccccce
Q psy6213 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN---GAVVVWNLGQISRSKQERVFNDHKRTV 100 (330)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~i 100 (330)
..|.+||.+......... + ...+...+|+| +++.|+..+.+ ..|.+||+.+ ++. ..+....+..
T Consensus 184 ~~l~i~D~~g~~~~~lt~-~-------~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~---g~~-~~l~~~~g~~ 250 (433)
T PRK04922 184 YALQVADSDGYNPQTILR-S-------AEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLAT---GQR-ELVASFRGIN 250 (433)
T ss_pred EEEEEECCCCCCceEeec-C-------CCccccccCCC-CCCEEEEEecCCCCcEEEEEECCC---CCE-EEeccCCCCc
Confidence 368888886544332211 1 12257899999 89888877643 4699999976 322 2233344455
Q ss_pred eEEEEEecCCCEEE-EEecCC--cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc--EEEEecCCCcc
Q psy6213 101 NKVSFHYVESNWLI-SGSQDG--TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT--IQQWDVRRPEK 175 (330)
Q Consensus 101 ~~i~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~ 175 (330)
....|+| +++.++ +.+.+| .|++||+.+++.. .+..+.......+|+|++++++++...+|. |+++|+.++.
T Consensus 251 ~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~- 327 (433)
T PRK04922 251 GAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS- 327 (433)
T ss_pred cCceECC-CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-
Confidence 6789999 666554 555555 5999999877643 344454455678999999965555555555 6666766532
Q ss_pred ceeeeccCCCCeEEEEEcCCCCEEEEEecCC---cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCe
Q psy6213 176 CFYQFTAHSGPIFACDWHPEHAWLATASRDK---TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSS 252 (330)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 252 (330)
...+..+.......+|+|+|++++..+.++ .|.+||+.+++.... .+........|+|||++++.+......+.
T Consensus 328 -~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L--t~~~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 328 -AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL--TPGSLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred -eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC--CCCCCCCCceECCCCCEEEEEEecCCceE
Confidence 222322334455789999999998776443 599999987743322 22223456799999998777765222346
Q ss_pred EEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 253 VNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 253 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
|.++++.... ...+..+.+.+...+|+|
T Consensus 405 L~~~~~~g~~--~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDGRV--RQRLVSADGEVREPAWSP 432 (433)
T ss_pred EEEEECCCCc--eEEcccCCCCCCCCccCC
Confidence 7888885443 455555566777788876
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-17 Score=137.29 Aligned_cols=237 Identities=14% Similarity=0.141 Sum_probs=151.9
Q ss_pred eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC---CCcEEEEECCCCCCCceeEEeccccccee
Q psy6213 25 VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT---NGAVVVWNLGQISRSKQERVFNDHKRTVN 101 (330)
Q Consensus 25 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~i~ 101 (330)
.|.++|.+......... . ...+...+|+| +++.|+..+. +..+.+|++.+ ++. ..+....+...
T Consensus 180 ~l~~~d~dg~~~~~lt~-~-------~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~---G~~-~~l~~~~~~~~ 246 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHR-S-------PQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLAN---GAV-RQVASFPRHNG 246 (429)
T ss_pred eEEEEcCCCCCCEEeec-C-------CCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCC---CCe-EEccCCCCCcC
Confidence 68888877654333221 1 11257899999 8888886542 35689999876 222 22222333455
Q ss_pred EEEEEecCCCEEEEE-ecCC--cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEE--ecCCCccc
Q psy6213 102 KVSFHYVESNWLISG-SQDG--TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW--DVRRPEKC 176 (330)
Q Consensus 102 ~i~~~~~~~~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~--d~~~~~~~ 176 (330)
...|+| +++.|+.. +.+| .|++||+++++..... .+...+....|+|+++.++++...++...+| |+..+ .
T Consensus 247 ~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g--~ 322 (429)
T PRK03629 247 APAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG--A 322 (429)
T ss_pred CeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC--C
Confidence 689999 77766644 4454 5899999887654433 3445678899999999655555445554555 55542 2
Q ss_pred eeeeccCCCCeEEEEEcCCCCEEEEEecC---CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeE
Q psy6213 177 FYQFTAHSGPIFACDWHPEHAWLATASRD---KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSV 253 (330)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i 253 (330)
...+...........|+|+|++|+..+.+ ..|.+||+.+++..... .........|+|||+.++.++.......+
T Consensus 323 ~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt--~~~~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 323 PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT--DTFLDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC--CCCCCCCceECCCCCEEEEEEcCCCceEE
Confidence 33343344456678999999998876643 35888999877432211 12233467899999987777751112247
Q ss_pred EEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 254 NVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 254 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
.++++.... ...+..|.+.+...+|+|
T Consensus 401 ~~~~~~G~~--~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 401 NLVSTDGRF--KARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEECCCCC--eEECccCCCCcCCcccCC
Confidence 777875443 456677888899999987
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=139.03 Aligned_cols=234 Identities=18% Similarity=0.260 Sum_probs=191.7
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
.+....+.++. +|..++.|+..|.+..+|..+ .+....+. -...|.++.|.. +.+++|++- ...+++||-. |
T Consensus 129 eFGPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t---~~L~~Ei~-v~Etv~Dv~~LH-neq~~AVAQ-K~y~yvYD~~-G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTR-NGRHLLLGGRKGHLAAFDWVT---KKLHFEIN-VMETVRDVTFLH-NEQFFAVAQ-KKYVYVYDNN-G 200 (545)
T ss_pred ccCCeeeeecC-CccEEEecCCccceeeeeccc---ceeeeeee-hhhhhhhhhhhc-chHHHHhhh-hceEEEecCC-C
Confidence 34457888988 999999999999999999988 55555544 346789999986 677777765 5689999965 7
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
..++.++.+ ..|..+.|.|..= +|++++..|.++.-|+.+ ++.+..+....+.+..++-+|-+..+-+|...|+|.+
T Consensus 201 tElHClk~~-~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~-GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSl 277 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYHF-LLVAASEAGFLKYQDVST-GKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSL 277 (545)
T ss_pred cEEeehhhc-Cchhhhcccchhh-eeeecccCCceEEEeech-hhhhHHHHccCCccchhhcCCccceEEEcCCCceEEe
Confidence 777777744 5689999999874 899999999999999998 6778888878889999999999999999999999999
Q ss_pred EeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEe
Q psy6213 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIAS 290 (330)
Q Consensus 211 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 290 (330)
|.....+.+.....|.++|.++++.++|.|++.++ .|..++|||+++... +.+... ..+...+++|..| ++++
T Consensus 278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~q-l~t~~t-p~~a~~ls~Sqkg--lLA~ 350 (545)
T KOG1272|consen 278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQ-LHTYRT-PHPASNLSLSQKG--LLAL 350 (545)
T ss_pred cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc---cccceeEeeeccccc-cceeec-CCCcccccccccc--ceee
Confidence 99999988888999999999999999999855555 599999999998876 344333 3457788887655 4455
Q ss_pred ecCCeEeeeecc
Q psy6213 291 SRVSIIPRAKNI 302 (330)
Q Consensus 291 ~~dg~i~iw~~~ 302 (330)
+....+.+|+..
T Consensus 351 ~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 351 SYGDHVQIWKDA 362 (545)
T ss_pred ecCCeeeeehhh
Confidence 666789999754
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-19 Score=150.41 Aligned_cols=233 Identities=15% Similarity=0.239 Sum_probs=184.4
Q ss_pred ccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee
Q psy6213 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 49 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~ 128 (330)
.+-..|.|+.|.. .+.++++|+.|..++||..++ ..+.....+|.+.|+.++.+. +..++++++.|..|++|.+.
T Consensus 188 gH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et---~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMET---ARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred hhhhheeeeeecc-ccceEeecCccceeeeeeccc---hhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecC
Confidence 3344579999998 999999999999999999888 888999999999999999986 77889999999999999999
Q ss_pred cCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceee---ec-cCCCCeEEEEEcCCCCEEEEEec
Q psy6213 129 CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ---FT-AHSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 129 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~---~~-~~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
++.++..+.+|++.|++++|+|.. +.+.||++++||.+- ...... .. ....-+.++.|...+.-+++++.
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccC
Confidence 999999999999999999999954 678899999999882 111111 11 12345777888888899999999
Q ss_pred CCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec-C
Q psy6213 205 DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG-D 283 (330)
Q Consensus 205 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~ 283 (330)
|+.-..|....... +...+.-+.++.+...+..+.- .+-.+.+|++.++.. .+.+.+|...+..+.++| +
T Consensus 337 d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred CcccccchhhHhhh------hccceEEEeccccccccceeee--eeeEeeeeecccchh-hhhhcccccceeeeeecCCC
Confidence 99998887654311 1111222222223222333333 488999999999976 788899999999999999 7
Q ss_pred CCEEEEeecCCeEeeeec
Q psy6213 284 PQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 284 ~~~l~s~~~dg~i~iw~~ 301 (330)
.....+++.||...||+.
T Consensus 408 ~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred cHhhhhccCCCceEeeec
Confidence 777888999999999974
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.8e-17 Score=121.23 Aligned_cols=269 Identities=15% Similarity=0.248 Sum_probs=188.6
Q ss_pred CeEEEEEcCCcceeeeeceeeccccccccceeeeeecc--cCCc-EEEEEcCCCcEEEEECCCCCCCceeEEecccc---
Q psy6213 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSC--IEEN-HIATGATNGAVVVWNLGQISRSKQERVFNDHK--- 97 (330)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--- 97 (330)
|.+.+|++...+......+.... ...+..+.|.. .++. .++-+...|.|.++........-.+..+..-+
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~d----ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~ 121 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTD----TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISV 121 (339)
T ss_pred cceEEEeecccccCccceeeeec----ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhh
Confidence 56888888876655421111111 11235666653 3455 56777888999999876622211122222111
Q ss_pred cceeEEEEEecCCCEEEEEecCCcEEEEEeecCce--eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES--TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK 175 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 175 (330)
....++.|++ .+..++++-.+|.+.+-+...... .+.++.|+.+.....|+...++++.+|++|+.+..||+|.+++
T Consensus 122 ~~~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 122 VEALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeeeEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 1345778887 788899998899999666655544 3478889999999999998888999999999999999996555
Q ss_pred ceee-eccCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCe-EEEEeecccCCe
Q psy6213 176 CFYQ-FTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKF-HLASCSLVVDSS 252 (330)
Q Consensus 176 ~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~~~~ 252 (330)
.+.. .+.|...|.+|.-+| .+.++++|+.|..|++||.++..+........+.|..+.++|.-.. +++++ .-+-
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C---Mh~G 277 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC---MHNG 277 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHH---HhcC
Confidence 4443 567889999998887 5789999999999999999988777777777899999999997543 34444 3666
Q ss_pred EEEEEccCCCcc----ceEeecCCCCeEEEEEecCCCEEEEee-cCCeEe-eee
Q psy6213 253 VNVWDIRRPYIP----LASFTEHKDVVSGLAWRGDPQLFIASS-RVSIIP-RAK 300 (330)
Q Consensus 253 i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~-iw~ 300 (330)
.+|-+.+..... ......|.+-..+-.|.....+||||+ .|+.++ +|-
T Consensus 278 ~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 278 AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 777777654322 344566777777778865556788875 466644 674
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-16 Score=118.82 Aligned_cols=236 Identities=13% Similarity=0.163 Sum_probs=163.9
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEE-EEecC------CcEEEEEe
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI-SGSQD------GTMRLFDI 127 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~-~~~~d------~~i~i~d~ 127 (330)
..++|+. +...+++|..+| .+||+.+..++..... +....-.+..+-| ..++++ +||.+ ..|.|||=
T Consensus 9 lsvs~NQ-D~ScFava~~~G-friyn~~P~ke~~~r~-~~~~G~~~veMLf---R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 9 LSVSFNQ-DHSCFAVATDTG-FRIYNCDPFKESASRQ-FIDGGFKIVEMLF---RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred eEEEEcc-CCceEEEEecCc-eEEEecCchhhhhhhc-cccCchhhhhHhh---hhceEEEecCCCCCCCCCceEEEEec
Confidence 5689998 899999998776 9999987622211111 1111122223333 234444 44443 47999996
Q ss_pred ecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCC--CCeEEEEEcCCCCEEEEEe-c
Q psy6213 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHS--GPIFACDWHPEHAWLATAS-R 204 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-~ 204 (330)
...+++.++. ...+|.++.+.++. +++. ..+.|++|...+.-+.++.+.... ....+++-..+..+|+.-+ .
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFK 157 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCc
Confidence 6667777776 67889999999874 4444 357899999986555555554322 3344443333444555544 5
Q ss_pred CCcEEEEeCCCCcc--ccceeccccceEEEEEcCCCCeEEEEeecccCC-eEEEEEccCCCccceEeecC--CCCeEEEE
Q psy6213 205 DKTIKVWDLSIKPS--LEYSINTIASVSRIKWRPQRKFHLASCSLVVDS-SVNVWDIRRPYIPLASFTEH--KDVVSGLA 279 (330)
Q Consensus 205 dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~--~~~v~~~~ 279 (330)
-|.|+|-|+...+. ......|.+.|.+++.+.+|.. +|+++ ..| -|||||..++.. +++++.- ...|.+|+
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~-vATaS--tkGTLIRIFdt~~g~~-l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTL-VATAS--TKGTLIRIFDTEDGTL-LQELRRGVDRADIYCIA 233 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccE-EEEec--cCcEEEEEEEcCCCcE-eeeeecCCchheEEEEE
Confidence 68999999987644 4667789999999999999995 67666 455 589999999987 6666532 35799999
Q ss_pred EecCCCEEEEeecCCeEeeeecccee
Q psy6213 280 WRGDPQLFIASSRVSIIPRAKNIKIF 305 (330)
Q Consensus 280 ~~~~~~~l~s~~~dg~i~iw~~~~~~ 305 (330)
|+|++.+||++|..|+++||......
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99999999999999999999765433
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-16 Score=135.29 Aligned_cols=217 Identities=14% Similarity=0.159 Sum_probs=140.9
Q ss_pred eeeeeecccCCcEEEEEcCC---CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEE-EEecCCcEEEEEee-
Q psy6213 54 CNDVAWSCIEENHIATGATN---GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI-SGSQDGTMRLFDIR- 128 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~-~~~~d~~i~i~d~~- 128 (330)
+.+.+|+| +++.|+..+.+ ..|.+||+.+ ++.. .+....+.+....|+| +++.|+ +.+.+|...+|.++
T Consensus 198 v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~---g~~~-~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 198 IISPAWSP-DGTKLAYVSFESKKPVVYVHDLAT---GRRR-VVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cccceEcC-CCCEEEEEEccCCCcEEEEEECCC---CCEE-EeecCCCCccceEECC-CCCEEEEEEccCCCceEEEEEC
Confidence 57899999 88888876643 3599999987 3322 2333345567889999 676665 56778876666554
Q ss_pred -cCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCC-
Q psy6213 129 -CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDK- 206 (330)
Q Consensus 129 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg- 206 (330)
++. ...+..+........|+|+|+.+++++..+|...+|.+.........+...........|+|+|++|+..+.++
T Consensus 272 ~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 272 DGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG 350 (427)
T ss_pred CCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence 333 44454455556778999999975555555666677765422222222222233345688999999998877654
Q ss_pred --cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCC--eEEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 207 --TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDS--SVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 207 --~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
.|.+||+.+++..... .........|+|||+.++.+.. ..| .+.+.++. +.. ...+..+.+.+...+|+|
T Consensus 351 ~~~I~v~d~~~g~~~~lt--~~~~~~~p~~spdg~~l~~~~~--~~g~~~l~~~~~~-g~~-~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 351 AFKLYVQDLATGQVTALT--DTTRDESPSFAPNGRYILYATQ--QGGRSVLAAVSSD-GRI-KQRLSVQGGDVREPSWGP 424 (427)
T ss_pred cEEEEEEECCCCCeEEcc--CCCCccCceECCCCCEEEEEEe--cCCCEEEEEEECC-CCc-eEEeecCCCCCCCCccCC
Confidence 5999999877432221 2233467899999999888776 343 45666664 322 445555667788888887
Q ss_pred C
Q psy6213 283 D 283 (330)
Q Consensus 283 ~ 283 (330)
-
T Consensus 425 ~ 425 (427)
T PRK02889 425 F 425 (427)
T ss_pred C
Confidence 3
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-15 Score=124.74 Aligned_cols=264 Identities=13% Similarity=0.125 Sum_probs=168.3
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeE
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNK 102 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~ 102 (330)
++.|.+.|.++.+....+...... ...+.|+| +++++++++.||.|.++|+.+ .+.+..+... ....+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~-------h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~---~~~v~~i~~G-~~~~~ 82 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAP-------HAGLKFSP-DGRYLYVANRDGTVSVIDLAT---GKVVATIKVG-GNPRG 82 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTE-------EEEEE-TT--SSEEEEEETTSEEEEEETTS---SSEEEEEE-S-SEEEE
T ss_pred CCEEEEEECCCCeEEEEEcCCCCc-------eeEEEecC-CCCEEEEEcCCCeEEEEECCc---ccEEEEEecC-CCcce
Confidence 899999999998877766543211 14577899 999999999999999999998 6677776643 45678
Q ss_pred EEEEecCCCEEEEEe-cCCcEEEEEeecCceeeeeecC-------CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCc
Q psy6213 103 VSFHYVESNWLISGS-QDGTMRLFDIRCQESTKIFHSN-------TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174 (330)
Q Consensus 103 i~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 174 (330)
+++++ ++++++++. .++.+.++|.++.+.++.+... ...+..+..+|..+.++++.-+.+.|.+.|.....
T Consensus 83 i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 83 IAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 99998 888887665 6899999999999988877542 34677888888888545555666888888987654
Q ss_pred cceeeeccCCCCeEEEEEcCCCCEEEEE-ecCCcEEEEeCCCCccccce-------------ecc---------------
Q psy6213 175 KCFYQFTAHSGPIFACDWHPEHAWLATA-SRDKTIKVWDLSIKPSLEYS-------------INT--------------- 225 (330)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~-------------~~~--------------- 225 (330)
.................|+|++++++.+ ..++.|-++|.++++..... ..|
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 3333333345667889999999987665 45567888887665321100 000
Q ss_pred --------------------------ccceEEEEEcCCCCeEEEE---eecccCCeEEEEEccCCCccceEeec-CCCCe
Q psy6213 226 --------------------------IASVSRIKWRPQRKFHLAS---CSLVVDSSVNVWDIRRPYIPLASFTE-HKDVV 275 (330)
Q Consensus 226 --------------------------~~~v~~~~~~~~~~~l~~~---~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~v 275 (330)
.+.-.-+.-+|+++++.+. .. ..+.|.++|.++.+. ...+.. ....+
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~--~~~~v~viD~~tl~~-~~~i~~~~~~~~ 318 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNP--DADTVQVIDKKTLKV-VKTITPGPGKRV 318 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-S--SHT-EEEEECCGTEE-EE-HHHHHT--E
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCC--CCceEEEEECcCcce-eEEEeccCCCcE
Confidence 0111346679999997766 33 478999999998854 444432 22359
Q ss_pred EEEEEecCCCEEEEeecCC--eEeeeecc
Q psy6213 276 SGLAWRGDPQLFIASSRVS--IIPRAKNI 302 (330)
Q Consensus 276 ~~~~~~~~~~~l~s~~~dg--~i~iw~~~ 302 (330)
..+.|++||+.+..+..++ .|.+++..
T Consensus 319 ~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 319 VHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp EEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred eccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 9999999999877776554 59998643
|
... |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=119.32 Aligned_cols=157 Identities=15% Similarity=0.314 Sum_probs=111.3
Q ss_pred EEEEEcCCCCcEEEEEec---------CCcEEEEecCCCccceeeecc-CCCCeEEEEEcCCCCEEEEE--ecCCcEEEE
Q psy6213 144 RDVEFNPHSPYAFASVSE---------NGTIQQWDVRRPEKCFYQFTA-HSGPIFACDWHPEHAWLATA--SRDKTIKVW 211 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~---------dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~ 211 (330)
..+.|+|+|+++++.... -|...+|.++....+...+.- ..++|.+++|+|+|+.|++. ..++.+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 468899999987776652 134556666544444554443 34579999999999987655 356799999
Q ss_pred eCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEee
Q psy6213 212 DLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 212 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
|++.. .+... ....+..+.|+|+|+++++++.....|.|.+||.++.+. +.... ...+..++|+|||++|++++
T Consensus 89 d~~~~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-i~~~~--~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 89 DVKGK-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-ISTFE--HSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred cCccc-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-eeccc--cCcEEEEEEcCCCCEEEEEE
Confidence 99733 32222 246778999999999977776433468899999997654 44433 33578999999999999997
Q ss_pred c------CCeEeeeeccceee
Q psy6213 292 R------VSIIPRAKNIKIFI 306 (330)
Q Consensus 292 ~------dg~i~iw~~~~~~~ 306 (330)
. |..++||+......
T Consensus 163 t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred eccceeccccEEEEEecCeEe
Confidence 5 67778887654433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-15 Score=129.75 Aligned_cols=214 Identities=11% Similarity=0.065 Sum_probs=142.1
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec---CCcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ---DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
.|.++|.+. .. ...+..+...+...+|+| +++.|+..+. +..|++||+.+++.... ..........+|+|+
T Consensus 180 ~l~~~d~dg---~~-~~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDG---YN-QFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCC---CC-CEEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCC
Confidence 688888775 22 233344667899999999 7887776542 45799999987764332 223344557899999
Q ss_pred CCcEEEEEecCC--cEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC-Cc--EEEEeCCCCccccceeccc
Q psy6213 152 SPYAFASVSENG--TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD-KT--IKVWDLSIKPSLEYSINTI 226 (330)
Q Consensus 152 ~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~ 226 (330)
|+.++++.+.+| .|++||+.+ +. ...+..+...+....|+|+|+.|+..+.+ +. |.++|+.++.. .......
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~t-g~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~ 330 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLAS-GQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEG 330 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCC-CC-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCC
Confidence 997665656555 488899986 33 33444445567889999999988777654 44 55556665532 2222233
Q ss_pred cceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCe---Eeeee
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSI---IPRAK 300 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~---i~iw~ 300 (330)
.......|+|||++++..........|.+||+.++.. ..+... .......|+|||+.|+.++.++. +.++.
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~--~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe--EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 4456789999999877766521234688899987753 333321 23456789999999999998875 44444
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-16 Score=137.57 Aligned_cols=247 Identities=15% Similarity=0.262 Sum_probs=168.5
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCC----CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISR----SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
+..++.++..+.++++|+.||+|++|+...... .+...++......+.++...+ .++.+|+++.||.|++.+++.
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCCCeEEEEEccc
Confidence 467788774669999999999999999876322 234445555667889999987 899999999999999999875
Q ss_pred Cce-------eeeeec-CCCCeEEE-EEcCCCC-cEEEEEecCCcEEEEecCCCccce-eeeccCCCCeEEEEEcCCCCE
Q psy6213 130 QES-------TKIFHS-NTESVRDV-EFNPHSP-YAFASVSENGTIQQWDVRRPEKCF-YQFTAHSGPIFACDWHPEHAW 198 (330)
Q Consensus 130 ~~~-------~~~~~~-~~~~v~~~-~~~~~~~-~~~~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~ 198 (330)
.+. .+.... ..+.+.++ +|..... .+++.+...+.|..||+++..... .......+.|++++.+|.+.+
T Consensus 1130 ~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~W 1209 (1431)
T KOG1240|consen 1130 YNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNW 1209 (1431)
T ss_pred cccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceE
Confidence 211 111111 22333333 4443333 378888999999999999733211 122334578999999999999
Q ss_pred EEEEecCCcEEEEeCCCCccc-cceeccccceEEEEEcCCCC--eEEEEeecccCCeEEEEEccCCCccceEeecC----
Q psy6213 199 LATASRDKTIKVWDLSIKPSL-EYSINTIASVSRIKWRPQRK--FHLASCSLVVDSSVNVWDIRRPYIPLASFTEH---- 271 (330)
Q Consensus 199 l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---- 271 (330)
+++|+..|.+.+||++-+..+ ....++..++..+..+|-.+ -..++++....+.|.+|++.++.. ...+...
T Consensus 1210 lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~-~~vl~~s~~~p 1288 (1431)
T KOG1240|consen 1210 LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR-QTVLWASDGAP 1288 (1431)
T ss_pred EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc-eEEEEcCCCCc
Confidence 999999999999999977443 33344567788887776543 223333322478999999998754 2332221
Q ss_pred -------------CC--CeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 272 -------------KD--VVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 272 -------------~~--~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.. ......+..-+.++.+|+.|..|+.|+..
T Consensus 1289 ~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1289 ILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred chhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 11 11222333356789999999999999854
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-14 Score=117.08 Aligned_cols=269 Identities=10% Similarity=0.144 Sum_probs=174.9
Q ss_pred CCeEEEEEc--CCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC----CCcEEEEECCCC-CCCceeEEecc
Q psy6213 23 RNVFKIFLI--KDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT----NGAVVVWNLGQI-SRSKQERVFND 95 (330)
Q Consensus 23 d~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~-~~~~~~~~~~~ 95 (330)
.+.|.+|++ +++++......... .....++++| ++++|++... +|.|..|++... .....+.....
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~------~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~ 84 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEG------ENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS 84 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEES------SSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE
T ss_pred CCcEEEEEEcCCCCCceEeeeecCC------CCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc
Confidence 378999988 44444333222211 1237799999 8888888766 578999998763 22334444443
Q ss_pred cccceeEEEEEecCCCEEEEEe-cCCcEEEEEeec-Cceeee---ee----------cCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 96 HKRTVNKVSFHYVESNWLISGS-QDGTMRLFDIRC-QESTKI---FH----------SNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 96 ~~~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
.......++++| ++++|+++. .+|.|.++++.. +..... +. .......++.++|++++++++--
T Consensus 85 ~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl 163 (345)
T PF10282_consen 85 GGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL 163 (345)
T ss_dssp SSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET
T ss_pred CCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec
Confidence 445567799998 778777776 489999999986 332221 21 12345789999999997666655
Q ss_pred cCCcEEEEecCCCcccee---ee-ccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCC--CCcc--ccce--e----cc
Q psy6213 161 ENGTIQQWDVRRPEKCFY---QF-TAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLS--IKPS--LEYS--I----NT 225 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~---~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~~--~~~~--~----~~ 225 (330)
....|.+|++......+. .+ .........+.|+|+++++++.. .++.|.++++. .+.. .... . ..
T Consensus 164 G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 164 GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 566899999986442221 12 13445688999999999876655 57789999988 2211 1110 1 11
Q ss_pred ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC--CCc-cceEeecCCCCeEEEEEecCCCEEEEee-cCCeEeeeec
Q psy6213 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR--PYI-PLASFTEHKDVVSGLAWRGDPQLFIASS-RVSIIPRAKN 301 (330)
Q Consensus 226 ~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iw~~ 301 (330)
......++++|||++|+++.. ..+.|.+|++.. +.. .+..........+.++++|+|++|+++. .++.|.+|+.
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cCCceeEEEecCCCEEEEEec--cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 226889999999999888887 699999999943 222 1223333344589999999999999887 5578999875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-17 Score=120.67 Aligned_cols=209 Identities=19% Similarity=0.263 Sum_probs=152.7
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceee------------------------------------
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRV------------------------------------ 44 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~------------------------------------ 44 (330)
.|...|+.+.--|++.+.+-| |..+.+|++..+..........
T Consensus 54 ~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~ 133 (323)
T KOG0322|consen 54 FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG 133 (323)
T ss_pred hccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence 466788889989998888889 9999999987633222111000
Q ss_pred ----------ccccccccceeeeeecccCCc--EEEEEcCCCcEEEEECCCCCC-------CceeEEecccccceeEEEE
Q psy6213 45 ----------GKNINLNFSCNDVAWSCIEEN--HIATGATNGAVVVWNLGQISR-------SKQERVFNDHKRTVNKVSF 105 (330)
Q Consensus 45 ----------~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~~~~i~~i~~ 105 (330)
.....-..++.+..|....+. ++++|.++|.+.+||+.+... .+.......|+.+|.++.+
T Consensus 134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy 213 (323)
T KOG0322|consen 134 GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY 213 (323)
T ss_pred CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee
Confidence 000111123455554332232 567788899999999987311 1333345578999999999
Q ss_pred EecCCCEEEEEecCCcEEEEEeecC--c--eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec
Q psy6213 106 HYVESNWLISGSQDGTMRLFDIRCQ--E--STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT 181 (330)
Q Consensus 106 ~~~~~~~l~~~~~d~~i~i~d~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~ 181 (330)
.+ ..+.=++|+.+..+..|.++.. . ...........+..+..-||++ ++++++.|+.|++|..++ ..++..++
T Consensus 214 as-~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrt-l~pLAVLk 290 (323)
T KOG0322|consen 214 AS-SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRT-LNPLAVLK 290 (323)
T ss_pred ch-hhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEecc-CCchhhhh
Confidence 86 5555667788888999988643 1 1222333445688899999999 899999999999999998 77888999
Q ss_pred cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeC
Q psy6213 182 AHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 182 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 213 (330)
-|.+.|++++|+|+..+++.++.|++|.+|++
T Consensus 291 yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999986
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-15 Score=130.51 Aligned_cols=207 Identities=14% Similarity=0.103 Sum_probs=144.0
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec---CCcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ---DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
.|.++|.+. .....+..+...+...+|+| +++.|+..+. +..|++||+.+++.. .+....+.+...+|+|+
T Consensus 183 ~l~~~d~dg----~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDG----ANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred EEEEECCCC----CCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 688888754 33345556778999999999 7888777653 468999999887653 34445567778999999
Q ss_pred CCcEEEEEecCCc--EEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec-CC--cEEEEeCCCCccccceeccc
Q psy6213 152 SPYAFASVSENGT--IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR-DK--TIKVWDLSIKPSLEYSINTI 226 (330)
Q Consensus 152 ~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~ 226 (330)
|+.++++.+.++. |++||+.++ ....+..+........|+|||+.|+..+. +| .|+++|+..++. .......
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~ 333 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGG 333 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCC
Confidence 9976667776665 777788763 23455556666778999999998887763 33 588888876533 2222234
Q ss_pred cceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
..+....|+|+|+.++.+.....+..|.+||+..+.. ..+.. ...+....|+|||+.|+..+.+
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt~-~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILTS-GFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--EeccC-CCCCCCCeECCCCCEEEEEEcc
Confidence 5567789999999876665411224788889865542 22322 2356788999999998876653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-15 Score=129.80 Aligned_cols=210 Identities=10% Similarity=0.066 Sum_probs=138.1
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC---CcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD---GTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
.|.++|... .....+..+...+.+.+|+| +++.|+..+.+ ..|++||+.+++... +....+.....+|+|+
T Consensus 177 ~L~~~D~dG----~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 177 QLQISDADG----QNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPD 250 (427)
T ss_pred EEEEECCCC----CCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence 566666643 33334445677899999999 78888776643 359999998886543 3334455678999999
Q ss_pred CCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec-CCcEEEEeC--CCCccccceeccccc
Q psy6213 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR-DKTIKVWDL--SIKPSLEYSINTIAS 228 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~ 228 (330)
++.++++.+.+|...+|.+.........+..+........|+|||+.|+..+. +|...+|.+ .++.. .........
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~ 329 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSY 329 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCC
Confidence 99766677888876666554323334555555556678899999998876654 456666654 44322 111122233
Q ss_pred eEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 229 VSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 229 v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
.....|+|+|++++.+........|.+||+.++.. ..+... .......|+|||+.|+.++.++
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~--~~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV--TALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe--EEccCC-CCccCceECCCCCEEEEEEecC
Confidence 44678999999877665411123799999987753 233322 2346789999999998887665
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-16 Score=121.35 Aligned_cols=240 Identities=10% Similarity=0.156 Sum_probs=177.7
Q ss_pred eeeeeecccCCcEEEEE-cCCCcEEEEECCCCCCCce---eEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 54 CNDVAWSCIEENHIATG-ATNGAVVVWNLGQISRSKQ---ERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~---~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
++.++|.-+....++.+ +.+..+..+.+....-... ........++|..++.. ...|++|-.+|.+.+|..+.
T Consensus 58 is~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 58 ISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEEeccC
Confidence 56777765233334444 3666677776665221111 12334456777777764 45677778899999999884
Q ss_pred Cc----eeeeeecCCCCeEEEEEcCCCCcEEEEEecC--CcEEEEecCCCccceeeeccC---------CCCeEEEEEcC
Q psy6213 130 QE----STKIFHSNTESVRDVEFNPHSPYAFASVSEN--GTIQQWDVRRPEKCFYQFTAH---------SGPIFACDWHP 194 (330)
Q Consensus 130 ~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~~---------~~~i~~~~~~~ 194 (330)
+. .+..+.. ..++..+.-++..++++++|+.. ..+.+||+.+. +.+..-+.- +-.++++.|-+
T Consensus 135 ~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 135 GDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred Cccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecC
Confidence 43 2333432 35677888888889888889998 88999999974 333322211 23467888988
Q ss_pred C--CCEEEEEecCCcEEEEeCCCCccccceec-cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC
Q psy6213 195 E--HAWLATASRDKTIKVWDLSIKPSLEYSIN-TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH 271 (330)
Q Consensus 195 ~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 271 (330)
. ...|++++.-+.+++||.+.++.+...+. ...+++++...|++++++++. .-+.+..||++.++.+...+.+-
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn---~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN---TKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec---ccchhheecccCceeeccccCCc
Confidence 7 78999999999999999998866554444 478999999999999866555 49999999999998866778899
Q ss_pred CCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 272 KDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 272 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.+.|.++..+|.+++|+++|-|..+||++.
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 999999999999999999999999999974
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-15 Score=130.28 Aligned_cols=236 Identities=12% Similarity=0.094 Sum_probs=152.5
Q ss_pred eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC---CCcEEEEECCCCCCCceeEEeccccccee
Q psy6213 25 VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT---NGAVVVWNLGQISRSKQERVFNDHKRTVN 101 (330)
Q Consensus 25 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~i~ 101 (330)
.|.++|.+...... +..+ ...+...+|+| +++.|+..+. +..|.+||+.+ +.. ..+..+.+.+.
T Consensus 183 ~l~~~d~dg~~~~~-lt~~-------~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~---g~~-~~l~~~~g~~~ 249 (435)
T PRK05137 183 RLAIMDQDGANVRY-LTDG-------SSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLET---GQR-ELVGNFPGMTF 249 (435)
T ss_pred EEEEECCCCCCcEE-EecC-------CCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCC---CcE-EEeecCCCccc
Confidence 67777876544322 2211 12368899999 8888887653 46799999976 322 33445566778
Q ss_pred EEEEEecCCCEE-EEEecCCc--EEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC--cEEEEecCCCccc
Q psy6213 102 KVSFHYVESNWL-ISGSQDGT--MRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG--TIQQWDVRRPEKC 176 (330)
Q Consensus 102 ~i~~~~~~~~~l-~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~ 176 (330)
...|+| +++.| ++.+.++. |++||+.+++.. .+..+........|+|++++++++...+| .|+++|+.. +.
T Consensus 250 ~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g-~~- 325 (435)
T PRK05137 250 APRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG-SN- 325 (435)
T ss_pred CcEECC-CCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC-CC-
Confidence 899999 66655 45565555 777788876653 44445556678899999996555544444 577888765 22
Q ss_pred eeeeccCCCCeEEEEEcCCCCEEEEEecC---CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccC---
Q psy6213 177 FYQFTAHSGPIFACDWHPEHAWLATASRD---KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVD--- 250 (330)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~--- 250 (330)
...+..+.+.+....|+|+|+.|+....+ ..|.+||+....... ......+....|+|||+.++.+......
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~--lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~ 403 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI--LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGA 403 (435)
T ss_pred eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe--ccCCCCCCCCeECCCCCEEEEEEccCCCCCc
Confidence 33343345566778999999999887643 358888876553221 2222356788999999987776641111
Q ss_pred CeEEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 251 SSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 251 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
..++++|+..... ..+. ..+.+...+|+|
T Consensus 404 ~~L~~~dl~g~~~--~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 404 PKLYTVDLTGRNE--REVP-TPGDASDPAWSP 432 (435)
T ss_pred ceEEEEECCCCce--EEcc-CCCCccCcccCC
Confidence 3688888876543 3333 244566777876
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-15 Score=121.57 Aligned_cols=245 Identities=12% Similarity=0.118 Sum_probs=154.6
Q ss_pred EEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc-CCCcEEEEECCCCC
Q psy6213 9 KHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA-TNGAVVVWNLGQIS 85 (330)
Q Consensus 9 ~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~ 85 (330)
.+.|+|||++ .+++ ||.|.++|+.+.+.......... ...+++++ ++++++++. ..+.+.++|.++
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~--------~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~t-- 109 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN--------PRGIAVSP-DGKYVYVANYEPGTVSVIDAET-- 109 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE--------EEEEEE---TTTEEEEEEEETTEEEEEETTT--
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC--------cceEEEcC-CCCEEEEEecCCCceeEecccc--
Confidence 4679999999 6666 99999999999987776544322 37899999 999888775 578999999988
Q ss_pred CCceeEEeccc-------ccceeEEEEEecCCCEEEEE-ecCCcEEEEEeecCceee-eeecCCCCeEEEEEcCCCCcEE
Q psy6213 86 RSKQERVFNDH-------KRTVNKVSFHYVESNWLISG-SQDGTMRLFDIRCQESTK-IFHSNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 86 ~~~~~~~~~~~-------~~~i~~i~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~ 156 (330)
.+.++.+... ...+..+..+| ....++.. -..+.|.+.|....+.+. .............|+|++++++
T Consensus 110 -le~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 110 -LEPVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp ---EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred -ccceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 6666655432 34677888887 55545544 445888888876654332 2222455678899999999877
Q ss_pred EEEecCCcEEEEecCCCcc------------------------------------------------------ceeeecc
Q psy6213 157 ASVSENGTIQQWDVRRPEK------------------------------------------------------CFYQFTA 182 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~------------------------------------------------------~~~~~~~ 182 (330)
++...+..|-++|.++... .++.+..
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred ecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence 7777777888888765321 1111111
Q ss_pred CCCCeEEEEEcCCCCEEEEE----ecCCcEEEEeCCCCccccceec-cccceEEEEEcCCCCeEEEEeecccCCeEEEEE
Q psy6213 183 HSGPIFACDWHPEHAWLATA----SRDKTIKVWDLSIKPSLEYSIN-TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257 (330)
Q Consensus 183 ~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d 257 (330)
..++ .-+..+|+++++.+. ...+.|.++|.++.+....... ....+..+.|+++|+++.++.-. .++.|.+||
T Consensus 268 ~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~-~~~~i~v~D 345 (369)
T PF02239_consen 268 QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWD-GNGAIVVYD 345 (369)
T ss_dssp SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE---TTEEEEEE
T ss_pred CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEec-CCCEEEEEE
Confidence 1222 456779999999988 4558899999998844333222 22359999999999998887762 233899999
Q ss_pred ccCCCccceEee
Q psy6213 258 IRRPYIPLASFT 269 (330)
Q Consensus 258 ~~~~~~~~~~~~ 269 (330)
..+.+. +..+.
T Consensus 346 ~~Tl~~-~~~i~ 356 (369)
T PF02239_consen 346 AKTLKE-KKRIP 356 (369)
T ss_dssp TTTTEE-EEEEE
T ss_pred CCCcEE-EEEEE
Confidence 998876 54444
|
... |
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-17 Score=131.13 Aligned_cols=170 Identities=15% Similarity=0.245 Sum_probs=130.8
Q ss_pred eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC----------
Q psy6213 19 AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR---------- 86 (330)
Q Consensus 19 ~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---------- 86 (330)
+..| .|.+.+.|....+..+.+... ......+|+++.|-|.+...++++-.+|.+.+||.+....
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~---r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k 264 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEE---RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK 264 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhc---ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC
Confidence 4455 778888877653332222211 1112256899999997778888899999999997632100
Q ss_pred -C--------------ceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 87 -S--------------KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 87 -~--------------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
+ .++..+.--++.|+.++|+| ++.+||+.+.||.++|||..+.+.+..++.--+...|++|+||
T Consensus 265 ~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD 343 (636)
T KOG2394|consen 265 DGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD 343 (636)
T ss_pred CCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC
Confidence 0 11112222345789999999 9999999999999999999999988888877788999999999
Q ss_pred CCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC
Q psy6213 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP 194 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 194 (330)
|++ +++|++|--|.||.+.. .+.+..-++|+..|..++|.|
T Consensus 344 GKy-IvtGGEDDLVtVwSf~e-rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 344 GKY-IVTGGEDDLVTVWSFEE-RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccE-EEecCCcceEEEEEecc-ceEEEeccccccceeeEeecc
Confidence 995 99999999999999987 777888899999999999983
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-15 Score=128.34 Aligned_cols=216 Identities=13% Similarity=0.072 Sum_probs=144.3
Q ss_pred CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC---CcEEEEEeecCceeeeeecCCCCeEEEEEcC
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD---GTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 150 (330)
..|.+||... .....+..+...+.+.+|+| +++.|+..+.+ ..|++||+.+++... +....+...+.+|+|
T Consensus 184 ~~l~i~D~~g----~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSDG----YNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCCC----CCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC
Confidence 3588888764 23334555677899999999 88888877643 469999998776543 333344556789999
Q ss_pred CCCcEEEEEecCC--cEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec-CCc--EEEEeCCCCccccceecc
Q psy6213 151 HSPYAFASVSENG--TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR-DKT--IKVWDLSIKPSLEYSINT 225 (330)
Q Consensus 151 ~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~ 225 (330)
+|+.++++.+.+| .|++||+.++ . ...+..+.......+|+|||+.|+..+. +|. |.++|+.+++... ....
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g-~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~ 334 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSR-Q-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ 334 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCC-C-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC
Confidence 9997666666666 5999999863 3 3445555555678899999998887763 444 6667776653322 2222
Q ss_pred ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC---CeEeeeec
Q psy6213 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV---SIIPRAKN 301 (330)
Q Consensus 226 ~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~iw~~ 301 (330)
.......+|+|+|++++.+........|.+||+.++.. ..+. +........|+|||++|+..+.+ +.|.+++.
T Consensus 335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~--~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV--RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe--EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 33445789999999877665411123699999987753 2332 22245567999999988877764 34555544
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-15 Score=114.36 Aligned_cols=252 Identities=16% Similarity=0.281 Sum_probs=168.6
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcc-----eeeeeceee-----ccccccccceeeeeeccc-CCcEEEEE
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTE-----FVETHNLRV-----GKNINLNFSCNDVAWSCI-EENHIATG 70 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~-----~~~~~~~~~-----~~~~~~~~~v~~~~~~~~-~~~~l~~~ 70 (330)
.+-|.++.|..+|.+|++| +|.|.++.-+... ....++.|. -....+...|+.+.|.++ +...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3558899999999999888 9999999765422 112222221 122334556789999872 33467777
Q ss_pred cCCCcEEEEECCCCCCCc--------------------------------eeEEe-cccccceeEEEEEecCCCEEEEEe
Q psy6213 71 ATNGAVVVWNLGQISRSK--------------------------------QERVF-NDHKRTVNKVSFHYVESNWLISGS 117 (330)
Q Consensus 71 ~~dg~i~iw~~~~~~~~~--------------------------------~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~ 117 (330)
+.|.+|++|.+....... +.+.+ ..|.--|++|.++. +...++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSAD 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSAD 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeecc
Confidence 889999999986522111 00111 24667789999995 777777765
Q ss_pred cCCcEEEEEeecCce---eeeeecC-----CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee---eec-----
Q psy6213 118 QDGTMRLFDIRCQES---TKIFHSN-----TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY---QFT----- 181 (330)
Q Consensus 118 ~d~~i~i~d~~~~~~---~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~---~~~----- 181 (330)
|-.|.+|+++-... +.-++.+ ..-|++..|+|...++|+-.+..|+|++.|++....+-. .+.
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 77899999874332 1222222 245888999999888999999999999999995321111 111
Q ss_pred -------cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec-cc---------------cceEEEEEcCCC
Q psy6213 182 -------AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN-TI---------------ASVSRIKWRPQR 238 (330)
Q Consensus 182 -------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~---------------~~v~~~~~~~~~ 238 (330)
.--..|..+.|+++|+++++-.. -+|++||+..........+ |. -.-..++|+.++
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 11246889999999999998765 5899999965433222211 11 123468899999
Q ss_pred CeEEEEeecccCCeEEEEEccCC
Q psy6213 239 KFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
.+ +.+|+ ..+..++|++..+
T Consensus 342 ~~-v~TGs--y~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 SY-VMTGS--YNNVFRVFNLARG 361 (433)
T ss_pred ce-Eeccc--ccceEEEecCCCC
Confidence 87 66666 6999999996544
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-16 Score=126.67 Aligned_cols=244 Identities=17% Similarity=0.228 Sum_probs=183.6
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeE-EecccccceeEEEEEec-CCCEEEEEecCCcEEEEEe
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQER-VFNDHKRTVNKVSFHYV-ESNWLISGSQDGTMRLFDI 127 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~-~~~~l~~~~~d~~i~i~d~ 127 (330)
+...|+.+.|+. .+..|++|+.|..|.+||... ..... -..+|...|...+|-|. +...+++++.||++++=.+
T Consensus 141 H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~---~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 141 HKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVS---GSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred CCCccceeeecc-cCceeeccCccceEEeehhhc---cCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 344478999998 999999999999999999987 34333 34578888988889884 3567899999999998876
Q ss_pred ecCce---eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee---eeccCCC---CeEEEEEcCCCC-
Q psy6213 128 RCQES---TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY---QFTAHSG---PIFACDWHPEHA- 197 (330)
Q Consensus 128 ~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~---~i~~~~~~~~~~- 197 (330)
..... ...+..|.++|..++.-|+.++.|.+++.|+.+.-+|++.. .+.. ..+.+.. ....++..|...
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~-~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD-VPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC-CccceeeeeccCCccceeeeeEecCCCCcc
Confidence 53322 33455689999999999999999999999999999999873 3222 2222333 577889999654
Q ss_pred EEEEEecCCcEEEEeCCCCccc------ccee------ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc--
Q psy6213 198 WLATASRDKTIKVWDLSIKPSL------EYSI------NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI-- 263 (330)
Q Consensus 198 ~l~~~~~dg~i~i~d~~~~~~~------~~~~------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~-- 263 (330)
.+++++.|..+++||.+..... .... .....|++++|+.++.-++++.+ |-.|+++.-..+..
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn---De~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN---DEDIYLFNKSMGDGSE 372 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec---ccceEEeccccccCCC
Confidence 8999999999999998765321 1111 23456999999988888899887 99999995432211
Q ss_pred ---------cc-eEeecCCC--CeEEEE-EecCCCEEEEeecCCeEeeeec
Q psy6213 264 ---------PL-ASFTEHKD--VVSGLA-WRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 264 ---------~~-~~~~~~~~--~v~~~~-~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.+ ..+++|.. .|.++- |-|...++++|+.-|.|.||+.
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence 11 22567763 577765 4678899999999999999973
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-16 Score=132.07 Aligned_cols=292 Identities=18% Similarity=0.258 Sum_probs=212.0
Q ss_pred cccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccC-CcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE-ENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iw~~ 81 (330)
.+++.++.++|.|+-++.. .-.+.+-|++..-....+-.|.. ...|-.+.|+|.. ..+-++......-.+|++
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~t-----pw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHIT-----PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccC-----cchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 3678889999999985444 55566778776332222222211 1225678888732 234455555566779999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-eeeeecCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-TKIFHSNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
...........+.+|...|+.+.|+|+....+++++.|..+..||+++... +..+..-...-..++|+-..+. +.+.+
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~-vlass 177 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN-VLASS 177 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc-hhhhc
Confidence 876666677778899999999999999999999999999999999987643 3444334455677899988886 55556
Q ss_pred cCCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCCCCcc-ccceeccccceEEEEEcCCC
Q psy6213 161 ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLSIKPS-LEYSINTIASVSRIKWRPQR 238 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~ 238 (330)
....|.+||++.+..++..+++|...++.++|+. -...+.+++.||+++.||...... .........++..-++.|-|
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG 257 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccC
Confidence 6778999999999999999999999999999976 345688999999999999876533 44455567788888888876
Q ss_pred CeEEEEeecccCCeEEE---------EEccCCCccceEeecCCCCeEEEEEecCC----------CEEEEeecCCeEeee
Q psy6213 239 KFHLASCSLVVDSSVNV---------WDIRRPYIPLASFTEHKDVVSGLAWRGDP----------QLFIASSRVSIIPRA 299 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i---------~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~s~~~dg~i~iw 299 (330)
+-.+..-.. .+..+.+ |+..+...++..+.+|.+.|....|-..+ -.|++-+.|..+++|
T Consensus 258 ~g~~~mp~~-G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 258 EGYCIMPMV-GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred ceeEecccc-CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 543332220 1333333 45555667799999999999888775532 269999999999999
Q ss_pred ecc
Q psy6213 300 KNI 302 (330)
Q Consensus 300 ~~~ 302 (330)
...
T Consensus 337 pI~ 339 (1081)
T KOG0309|consen 337 PID 339 (1081)
T ss_pred ecc
Confidence 643
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-15 Score=112.07 Aligned_cols=154 Identities=18% Similarity=0.406 Sum_probs=106.1
Q ss_pred eEEEEEecCCCEEEEEec----------CCcEEEEEeecC-ceeeeeec-CCCCeEEEEEcCCCCcEEEE-EecCCcEEE
Q psy6213 101 NKVSFHYVESNWLISGSQ----------DGTMRLFDIRCQ-ESTKIFHS-NTESVRDVEFNPHSPYAFAS-VSENGTIQQ 167 (330)
Q Consensus 101 ~~i~~~~~~~~~l~~~~~----------d~~i~i~d~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~-~~~dg~i~i 167 (330)
..+.|+| +|++|+.-.. -+...+|.++.. .....+.. ..++|.+++|+|+++.++++ |..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4577887 5655553322 134556655332 33444433 34579999999999864333 445779999
Q ss_pred EecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC---CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEE
Q psy6213 168 WDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD---KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLAS 244 (330)
Q Consensus 168 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 244 (330)
||++ .+.+..+. ...++.+.|+|+|++|++++.+ |.+.+||.++.+.+... .+ ..++.++|+|+|++++++
T Consensus 88 yd~~--~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~-~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 88 YDVK--GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EH-SDATDVEWSPDGRYLATA 161 (194)
T ss_pred EcCc--ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-cc-CcEEEEEEcCCCCEEEEE
Confidence 9997 44455553 5678899999999999998743 66999999976544333 22 357899999999997776
Q ss_pred eec---ccCCeEEEEEccCC
Q psy6213 245 CSL---VVDSSVNVWDIRRP 261 (330)
Q Consensus 245 ~~~---~~~~~i~i~d~~~~ 261 (330)
.+. ..|+.++||+....
T Consensus 162 ~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EeccceeccccEEEEEecCe
Confidence 651 13789999998643
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-14 Score=115.07 Aligned_cols=275 Identities=16% Similarity=0.225 Sum_probs=172.8
Q ss_pred ccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEE-----cC-----C
Q psy6213 5 SPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATG-----AT-----N 73 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~-----d 73 (330)
.+.+..+++++|++++.+ +..++|++...+...-..... .+.++.|+| .+++|.+= .. .
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~---------~~~~L~fSP-~g~yL~T~e~~~i~~~~~~~~ 104 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK---------KTYDLLFSP-KGNYLLTWEPWAIYGPKNASN 104 (566)
T ss_pred CcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc---------eeeeeeecc-cccccccccccccccCCCCCC
Confidence 346788999999998888 999999999887533222211 148899999 88887752 11 2
Q ss_pred CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCC--
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH-- 151 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-- 151 (330)
-.+.+|++++ ......+......-++..|++ +..+.+ --..+.+++|++.+.+.+.. +-+...+..+.++|.
T Consensus 105 pn~~v~~vet---~~~~s~~q~k~Q~~W~~qfs~-dEsl~a-rlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~ 178 (566)
T KOG2315|consen 105 PNVLVYNVET---GVQRSQIQKKMQNGWVPQFSI-DESLAA-RLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPE 178 (566)
T ss_pred Cceeeeeecc---ceehhheehhhhcCccccccc-chhhhh-hhhcceEEEEecCCccceee-eeeccceeeEEecCCCC
Confidence 3477999887 333222222222225778886 444332 22245688887765332211 113344555555554
Q ss_pred --------------------------------------------------CCcEEEEEec--C---------CcEEEEec
Q psy6213 152 --------------------------------------------------SPYAFASVSE--N---------GTIQQWDV 170 (330)
Q Consensus 152 --------------------------------------------------~~~~~~~~~~--d---------g~i~i~d~ 170 (330)
|.-+|+.++. | .+++++++
T Consensus 179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 3222222211 1 13444444
Q ss_pred CCCccceeeeccCCCCeEEEEEcCCCCEEEEE--ecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecc
Q psy6213 171 RRPEKCFYQFTAHSGPIFACDWHPEHAWLATA--SRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLV 248 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 248 (330)
+. ......+ ...++|.++.|+|+++-++++ -+=..+.|||++... ...-..++-+++-|+|.|++++.+|-++
T Consensus 259 ~g-~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~---v~df~egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 259 QG-ESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP---VFDFPEGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred cC-ceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE---eEeCCCCCccceEECCCCCEEEEeecCC
Confidence 31 2222222 246899999999999876554 456789999988652 1222356778899999999988888766
Q ss_pred cCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeec------CCeEeeeeccc
Q psy6213 249 VDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR------VSIIPRAKNIK 303 (330)
Q Consensus 249 ~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~iw~~~~ 303 (330)
..|.+.+||+.+.++ +..+.... -+-+.|+|||++++|++. |+.++||....
T Consensus 334 L~G~mEvwDv~n~K~-i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 334 LPGDMEVWDVPNRKL-IAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CCCceEEEeccchhh-ccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 789999999998655 66665433 455789999999999986 46677776543
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-14 Score=111.05 Aligned_cols=240 Identities=18% Similarity=0.382 Sum_probs=171.1
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCC--CceeEEecccc------------cceeEEEEEec-CCCEEEEEec
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISR--SKQERVFNDHK------------RTVNKVSFHYV-ESNWLISGSQ 118 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~------------~~i~~i~~~~~-~~~~l~~~~~ 118 (330)
+.++.|.. .|++||+|..+|.|.++.-+.... ......++.|. ..|..+.|.++ +...++..+.
T Consensus 28 is~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 28 ISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred eeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 68999998 999999999999999998655322 12333343343 45888999863 3346777888
Q ss_pred CCcEEEEEeecCcee-----------------------------------eee-ecCCCCeEEEEEcCCCCcEEEEEecC
Q psy6213 119 DGTMRLFDIRCQEST-----------------------------------KIF-HSNTESVRDVEFNPHSPYAFASVSEN 162 (330)
Q Consensus 119 d~~i~i~d~~~~~~~-----------------------------------~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d 162 (330)
|.+|++|-+...... +.+ ..|.--|.++.++.|.+ .++++ +|
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-t~lSA-Dd 184 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-TFLSA-DD 184 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-eEeec-cc
Confidence 999999987532111 111 13556688999999998 35554 57
Q ss_pred CcEEEEecCCCcccee--eeccC-----CCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCcc-----cccee------
Q psy6213 163 GTIQQWDVRRPEKCFY--QFTAH-----SGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPS-----LEYSI------ 223 (330)
Q Consensus 163 g~i~i~d~~~~~~~~~--~~~~~-----~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~------ 223 (330)
=.|-+|++.-..+... -++++ ..-|++..|+|. .++++-.+..|+|++.|++.... .....
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~ 264 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS 264 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence 7899999875444332 22333 245889999994 57888888999999999984411 11111
Q ss_pred -----ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCC------------Ce---EEEEEecC
Q psy6213 224 -----NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKD------------VV---SGLAWRGD 283 (330)
Q Consensus 224 -----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~------------~v---~~~~~~~~ 283 (330)
.--..|..+.|+++|+| +.+-. =-+|++||+.....|+.+.+.|.. .| ..++|+.+
T Consensus 265 rsffseiIsSISDvKFs~sGry-ilsRD---yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 265 RSFFSEIISSISDVKFSHSGRY-ILSRD---YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred hhhHHHHhhhhhceEEccCCcE-EEEec---cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11246889999999998 55542 589999999887777888877652 22 45789999
Q ss_pred CCEEEEeecCCeEeeee
Q psy6213 284 PQLFIASSRVSIIPRAK 300 (330)
Q Consensus 284 ~~~l~s~~~dg~i~iw~ 300 (330)
+.+++||+.....+++.
T Consensus 341 ~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cceEecccccceEEEec
Confidence 99999999999999997
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-14 Score=119.56 Aligned_cols=221 Identities=12% Similarity=0.119 Sum_probs=136.2
Q ss_pred eeeeecccCCcE--E-EEEcCCC--cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec-CC----cEEE
Q psy6213 55 NDVAWSCIEENH--I-ATGATNG--AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ-DG----TMRL 124 (330)
Q Consensus 55 ~~~~~~~~~~~~--l-~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-d~----~i~i 124 (330)
..-+|+| +++. + ++...+| .|.+.++.... .+.+. ...+.....+|+| +++.|+..+. +| .+..
T Consensus 188 ~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~-~~~lt---~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 188 ITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPA-GKKIL---ALQGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred ccceEcc-CCCceEEEEEEccCCCceEEEEECCCCC-ceEee---cCCCCccceEECC-CCCEEEEEECCCCCcceeEEE
Confidence 5679999 7764 2 2444444 47777777621 22222 2344455689999 7777665442 23 3444
Q ss_pred EEeecC---ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEE--ecCCCccceeeeccCCCCeEEEEEcCCCCEE
Q psy6213 125 FDIRCQ---ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW--DVRRPEKCFYQFTAHSGPIFACDWHPEHAWL 199 (330)
Q Consensus 125 ~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 199 (330)
|++..+ +...............+|+|+|+.++++...+|...+| ++...+.....+..+...+....|+|||+.|
T Consensus 262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence 676643 32333322223446789999999756555566755555 4432222334444455567789999999988
Q ss_pred EEEecC---CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeE
Q psy6213 200 ATASRD---KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVS 276 (330)
Q Consensus 200 ~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~ 276 (330)
+..+.+ ..|.+||+.+++.... ......+....|+|||+.++.+........|+++|+..++. ..+....+.+.
T Consensus 342 af~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~--~~Lt~~~g~~~ 418 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT--RKIVIGSGEKR 418 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCccc
Confidence 876643 3699999988744322 22234567899999999877666522356788999887653 33333455677
Q ss_pred EEEEecCC
Q psy6213 277 GLAWRGDP 284 (330)
Q Consensus 277 ~~~~~~~~ 284 (330)
..+|+|-.
T Consensus 419 ~p~Ws~~~ 426 (428)
T PRK01029 419 FPSWGAFP 426 (428)
T ss_pred CceecCCC
Confidence 78888743
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-14 Score=126.37 Aligned_cols=275 Identities=14% Similarity=0.129 Sum_probs=189.3
Q ss_pred CcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeecc-ccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGK-NINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
|-+++++.++-. .|+.+| .-.+.+||+..+.....+..-... .......+.. .+.+++++..-+.+..=+
T Consensus 6 ~~~~l~~~~~~~--~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l------~~~~~v~~~~~~~v~~~~ 77 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKL------LSGKIVTCAKSDEVYVKE 77 (967)
T ss_pred ccccccchhhcc--ceeeecCCCceEEeeCCchhHhhhhhhhccccccccccccee------ccceEEEEEeecceeecc
Confidence 456666666655 777777 888999999987765443321110 0000000000 233444544433333322
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCe----EEEEEcCCCCcEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESV----RDVEFNPHSPYAF 156 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~ 156 (330)
... .....+ ...+....+.. +...++.++.++.+.+||...+............. .-+.++++.- .+
T Consensus 78 ~~~----~~~~~~---s~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~-~i 148 (967)
T KOG0974|consen 78 ASN----QIIERF---SDWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEEL-YI 148 (967)
T ss_pred hhh----hhhhhc---cccccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEE-EE
Confidence 221 111122 23333344443 66778888888999999998777666555333211 1223445544 48
Q ss_pred EEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc-ceeccccceEEEEEc
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWR 235 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~ 235 (330)
++|+.-+.|.+|+... ......+.+|.+.|.++.++.||+++++.+.|.++|+|++.+.+... ....|...+..++|.
T Consensus 149 ~~gsv~~~iivW~~~~-dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~ 227 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHE-DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL 227 (967)
T ss_pred EeccccccEEEEeccc-cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence 8889999999999985 33334788999999999999999999999999999999999987765 677899999999999
Q ss_pred CCCCeEEEEeecccCCeEEEEEccCCCccceEeecCC-CCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK-DVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
|+ . +++.+ +|.+.++|+.+... +..+.+|. ..++.++..++...++|++.||.+++|+..
T Consensus 228 ~n--~-i~t~g--edctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 228 PN--R-IITVG--EDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred cc--e-eEEec--cceEEEEEecccce--ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 99 3 66666 79999999766543 45677776 479999999999999999999999999754
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-14 Score=120.88 Aligned_cols=236 Identities=14% Similarity=0.149 Sum_probs=145.6
Q ss_pred CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC---CcEEEEECCCCCCCceeEEecccccce
Q psy6213 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN---GAVVVWNLGQISRSKQERVFNDHKRTV 100 (330)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~i 100 (330)
..|.++|.+......... + ...+...+|+| ++++|+.+..+ ..|.+||+.+ ++. ..+..+...+
T Consensus 170 ~~l~~~d~~g~~~~~l~~-~-------~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~---g~~-~~~~~~~~~~ 236 (417)
T TIGR02800 170 YELQVADYDGANPQTITR-S-------REPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLAT---GQR-EKVASFPGMN 236 (417)
T ss_pred ceEEEEcCCCCCCEEeec-C-------CCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCC---CCE-EEeecCCCCc
Confidence 357777776443322221 1 11246788999 89988877644 4799999976 322 2233455566
Q ss_pred eEEEEEecCCCEEE-EEecCC--cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC--cEEEEecCCCcc
Q psy6213 101 NKVSFHYVESNWLI-SGSQDG--TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG--TIQQWDVRRPEK 175 (330)
Q Consensus 101 ~~i~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~ 175 (330)
.+++|+| +++.|+ +.+.++ .|++||+.+++... +..+........|+|++++++++...++ .|+++|+.+. +
T Consensus 237 ~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~-~ 313 (417)
T TIGR02800 237 GAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG-E 313 (417)
T ss_pred cceEECC-CCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC-C
Confidence 7789999 666555 444444 58888988765433 3334444567789999996555554444 4777787653 2
Q ss_pred ceeeeccCCCCeEEEEEcCCCCEEEEEecCC---cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCe
Q psy6213 176 CFYQFTAHSGPIFACDWHPEHAWLATASRDK---TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSS 252 (330)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 252 (330)
...+..+........|+|+|++++.++.++ .|.+||+.++.... . ..........|+|++++++.+........
T Consensus 314 -~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l-~~~~~~~~p~~spdg~~l~~~~~~~~~~~ 390 (417)
T TIGR02800 314 -VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-L-TDTGLDESPSFAPNGRMILYATTRGGRGV 390 (417)
T ss_pred -EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-c-cCCCCCCCceECCCCCEEEEEEeCCCcEE
Confidence 334444556677889999999999888776 78999988753321 1 11223445689999998777776211234
Q ss_pred EEEEEccCCCccceEeecCCCCeEEEEE
Q psy6213 253 VNVWDIRRPYIPLASFTEHKDVVSGLAW 280 (330)
Q Consensus 253 i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 280 (330)
+++.+.... . ...+..+.+.+..++|
T Consensus 391 l~~~~~~g~-~-~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 391 LGLVSTDGR-F-RARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEECCCc-e-eeECCCCCCCcCCCCC
Confidence 566654432 2 3334333444544444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-13 Score=113.31 Aligned_cols=283 Identities=11% Similarity=0.138 Sum_probs=189.2
Q ss_pred CCcccceEEEEeeCCCee-ecC------C------CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGLA-QPS------R------NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIA 68 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~-~~g------d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 68 (330)
.|.+ |.-+.|||..+|| +-+ + ..++|||+.+|...+.+.......... .-+.||. +++++|
T Consensus 248 ~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~W----P~frWS~-DdKy~A 321 (698)
T KOG2314|consen 248 YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKW----PIFRWSH-DDKYFA 321 (698)
T ss_pred cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCcccc----ceEEecc-CCceeE
Confidence 3444 7889999999994 433 1 689999999999888877643222111 3478998 999998
Q ss_pred EEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec-----CCcEEEEEeecCceeeeeecCCCCe
Q psy6213 69 TGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ-----DGTMRLFDIRCQESTKIFHSNTESV 143 (330)
Q Consensus 69 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~v 143 (330)
--..+ .|.||+... ...+..-.-.-..|....|+| .+++||-=.. -..+.+..+.+++.+++-..+.-.-
T Consensus 322 rm~~~-sisIyEtps---f~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsD 396 (698)
T KOG2314|consen 322 RMTGN-SISIYETPS---FMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSD 396 (698)
T ss_pred Eeccc-eEEEEecCc---eeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeec
Confidence 77764 699998765 333222222346788999999 7777775332 1356777777777777665555444
Q ss_pred EEEEEcCCCCcEEEEEe---------cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec---CCcEEEE
Q psy6213 144 RDVEFNPHSPYAFASVS---------ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR---DKTIKVW 211 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~ 211 (330)
..+.|-.+|.++.+-.. .-..+.|+.++...-++.... ....|...+|-|.|..+++-+. ..++.+|
T Consensus 397 ckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY 475 (698)
T KOG2314|consen 397 CKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFY 475 (698)
T ss_pred cEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEE
Confidence 56778888886433321 112466777776555555544 5678999999999998877653 3568899
Q ss_pred eCCCCcc-cccee-ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEE
Q psy6213 212 DLSIKPS-LEYSI-NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIA 289 (330)
Q Consensus 212 d~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 289 (330)
.+++... ..... -.....+.+.|+|.|+++++++-.+..|.+.++|+............| ..-+.+.|.|.|+++++
T Consensus 476 ~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT 554 (698)
T KOG2314|consen 476 AVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVT 554 (698)
T ss_pred EeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEE
Confidence 8874322 11111 123567889999999998777654468999999998533212222333 34677899999999999
Q ss_pred eecCCeEe
Q psy6213 290 SSRVSIIP 297 (330)
Q Consensus 290 ~~~dg~i~ 297 (330)
++.-....
T Consensus 555 ~ss~wrhk 562 (698)
T KOG2314|consen 555 SSSSWRHK 562 (698)
T ss_pred eeehhhhc
Confidence 98755433
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.66 E-value=8e-14 Score=119.48 Aligned_cols=206 Identities=13% Similarity=0.131 Sum_probs=139.7
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC---CcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD---GTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
.|.++|... .....+..+...+....|+| ++++|+.+..+ ..|++||+.+++.... ..+...+.+++|+|+
T Consensus 171 ~l~~~d~~g----~~~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDG----ANPQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCC----CCCEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC
Confidence 577777654 22334445666788999999 88888876643 4799999988765433 334556677899999
Q ss_pred CCcEEEEEecCC--cEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC-C--cEEEEeCCCCccccceeccc
Q psy6213 152 SPYAFASVSENG--TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD-K--TIKVWDLSIKPSLEYSINTI 226 (330)
Q Consensus 152 ~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~ 226 (330)
++.++++.+.++ .|++||+.++ . ...+..+........|+|+|+.|+..+.. + .|.++|+.+++. .......
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~ 321 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGK-Q-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRG 321 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCC-C-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCC
Confidence 997666666555 5888898763 2 33444455555678999999988766543 3 578888876632 2233344
Q ss_pred cceEEEEEcCCCCeEEEEeecccCC---eEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCe
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDS---SVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSI 295 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 295 (330)
.......|+|++++++.+.. ++ .|.+||+.++.. ..+... .......|+|||+.|+..+.++.
T Consensus 322 ~~~~~~~~spdg~~i~~~~~---~~~~~~i~~~d~~~~~~--~~l~~~-~~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHR---EGGGFNIAVMDLDGGGE--RVLTDT-GLDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred CCccCeEECCCCCEEEEEEc---cCCceEEEEEeCCCCCe--EEccCC-CCCCCceECCCCCEEEEEEeCCC
Confidence 56678899999998777664 43 788999887543 333322 23455689999999988877653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-14 Score=110.54 Aligned_cols=289 Identities=16% Similarity=0.240 Sum_probs=195.8
Q ss_pred CcccceEEEEeeCCCe-eecC-CCeEEEEE-cCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 3 YLSPVHKHGLKADNGL-AQPS-RNVFKIFL-IKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
|.+.|++...-|...- ++.. |.+++||- .+.++....+... .+.+++++.+.+ +...|++|-.+|++.-+
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~------mP~~~~~~~y~~-e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY------MPSPCSAMEYVS-ESRRLYVGQDNGTVTEF 95 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh------CCCCceEeeeec-cceEEEEEEecceEEEE
Confidence 5666777777776655 7777 99999994 4556554433222 233468999998 88999999999999988
Q ss_pred ECCCC-CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee------------------------------
Q psy6213 80 NLGQI-SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR------------------------------ 128 (330)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~------------------------------ 128 (330)
.+... ++....+.+..|...+..+.|+. ....+++.+.|..+.---.+
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~ 174 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHS 174 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccc
Confidence 77542 23455666677888888888875 66777777766543322111
Q ss_pred -----------cCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCC
Q psy6213 129 -----------CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHA 197 (330)
Q Consensus 129 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 197 (330)
.-.++.++.+|.+.+.+++|.|... ++.+|..|..+.+||+--.......+.+|...|..+...+--+
T Consensus 175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR 253 (404)
T ss_pred cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe
Confidence 1133556678899999999999887 7999999999999999865556677888999999999988889
Q ss_pred EEEEEecCCcEEEEeCCCCcccc--ceec--------------------------------cccceEEEEEcCCCCeEEE
Q psy6213 198 WLATASRDKTIKVWDLSIKPSLE--YSIN--------------------------------TIASVSRIKWRPQRKFHLA 243 (330)
Q Consensus 198 ~l~~~~~dg~i~i~d~~~~~~~~--~~~~--------------------------------~~~~v~~~~~~~~~~~l~~ 243 (330)
.+.+++.||.|.+||.+...... .... ....+...+-+....+ ..
T Consensus 254 ~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~-p~ 332 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSY-PT 332 (404)
T ss_pred eeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccc-cc
Confidence 99999999999999987652210 0000 0011111111111111 11
Q ss_pred EeecccCCeEEEEEccCC------CccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccce
Q psy6213 244 SCSLVVDSSVNVWDIRRP------YIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 244 ~~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 304 (330)
.+ .+-.+|+-|.-.. ..++..+..-...|++|.+...-.+|+|+|.|..|+||+....
T Consensus 333 mg---~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~v 396 (404)
T KOG1409|consen 333 MG---FEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRSV 396 (404)
T ss_pred cc---ceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechhh
Confidence 11 2444554443211 1224444444457999999888889999999999999986543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.3e-14 Score=119.53 Aligned_cols=237 Identities=11% Similarity=0.065 Sum_probs=145.4
Q ss_pred eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC---CcEEEEECCCCCCCceeEEeccccccee
Q psy6213 25 VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN---GAVVVWNLGQISRSKQERVFNDHKRTVN 101 (330)
Q Consensus 25 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~i~ 101 (330)
.|.++|.+.+....... + ...+...+|+| +++.|+..+.+ ..|.+|++.+ ++. ..+....+.+.
T Consensus 180 ~l~~~d~~g~~~~~l~~-~-------~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~---g~~-~~l~~~~g~~~ 246 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQ-S-------REPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDT---GRR-EQITNFEGLNG 246 (430)
T ss_pred EEEEECCCCCCceEEec-C-------CCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCC---CCE-EEccCCCCCcC
Confidence 46666776544322211 1 12257889999 88888766543 3588899876 222 22333334556
Q ss_pred EEEEEecCCCEEE-EEecCC--cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC--cEEEEecCCCccc
Q psy6213 102 KVSFHYVESNWLI-SGSQDG--TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG--TIQQWDVRRPEKC 176 (330)
Q Consensus 102 ~i~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~ 176 (330)
...|+| +++.|+ +...+| .|++||+.+++.. .+..+........|+|+++.++++...+| .|+++|+.++. .
T Consensus 247 ~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~ 323 (430)
T PRK00178 247 APAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-A 323 (430)
T ss_pred CeEECC-CCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-E
Confidence 789999 777665 555555 6888899877644 34444555667899999997666655554 47777776533 2
Q ss_pred eeeeccCCCCeEEEEEcCCCCEEEEEecC-C--cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeE
Q psy6213 177 FYQFTAHSGPIFACDWHPEHAWLATASRD-K--TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSV 253 (330)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i 253 (330)
..+...........|+|+|+.++..+.+ + .|.++|+.+++..... .........|+|+|+.++.+........|
T Consensus 324 -~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt--~~~~~~~p~~spdg~~i~~~~~~~g~~~l 400 (430)
T PRK00178 324 -ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT--DTSLDESPSVAPNGTMLIYATRQQGRGVL 400 (430)
T ss_pred -EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc--CCCCCCCceECCCCCEEEEEEecCCceEE
Confidence 2222122233467899999998877653 3 4888998876432221 11222356899999998777762122456
Q ss_pred EEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 254 NVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 254 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
.++++.... ...+..+.+.+...+|+|
T Consensus 401 ~~~~~~g~~--~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 401 MLVSINGRV--RLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EEEECCCCc--eEECcCCCCCcCCCccCC
Confidence 677775432 334444556677778876
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-14 Score=119.34 Aligned_cols=214 Identities=14% Similarity=0.142 Sum_probs=133.4
Q ss_pred eeeeeecccCCcEEEEEcC-CC--cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEE-EEecCCc--EEEEEe
Q psy6213 54 CNDVAWSCIEENHIATGAT-NG--AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI-SGSQDGT--MRLFDI 127 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~-~~~~d~~--i~i~d~ 127 (330)
+....|+| +++.|+..+. ++ .|.+||+.+ ++.. .+....+......|+| +++.|+ +.+.+|. |+++|+
T Consensus 220 ~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~t---g~~~-~lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 220 LMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYT---QVRE-KVTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred ccCceECC-CCCEEEEEEecCCCcEEEEEECCC---CCeE-EecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEEEEEC
Confidence 57889999 8888877654 33 588888876 2221 2222233445789999 677665 4566664 777888
Q ss_pred ecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc--EEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC
Q psy6213 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT--IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD 205 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 205 (330)
.+++.. .+..+.......+|+|+++.++++...++. |+++|+.++. ...+..........+|+|+|++|+..+.+
T Consensus 294 ~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 294 ATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred CCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 776543 344344556788999999976666655554 6666776532 22222222233457899999988776653
Q ss_pred -C--cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCC--eEEEEEccCCCccceEeecCCCCeEEEEE
Q psy6213 206 -K--TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDS--SVNVWDIRRPYIPLASFTEHKDVVSGLAW 280 (330)
Q Consensus 206 -g--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 280 (330)
+ .|.++|+.+++.... .. ........|+|+|+.++.+.. .++ .+++++.... . ...+..+.+.+...+|
T Consensus 371 ~g~~~I~~~dl~~g~~~~l-t~-~~~d~~ps~spdG~~I~~~~~--~~g~~~l~~~~~~G~-~-~~~l~~~~g~~~~p~W 444 (448)
T PRK04792 371 NGKFNIARQDLETGAMQVL-TS-TRLDESPSVAPNGTMVIYSTT--YQGKQVLAAVSIDGR-F-KARLPAGQGEVKSPAW 444 (448)
T ss_pred CCceEEEEEECCCCCeEEc-cC-CCCCCCceECCCCCEEEEEEe--cCCceEEEEEECCCC-c-eEECcCCCCCcCCCcc
Confidence 3 356678777643221 11 112224579999999877776 344 4777776433 3 4555555666778888
Q ss_pred ec
Q psy6213 281 RG 282 (330)
Q Consensus 281 ~~ 282 (330)
+|
T Consensus 445 sp 446 (448)
T PRK04792 445 SP 446 (448)
T ss_pred CC
Confidence 87
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-12 Score=105.73 Aligned_cols=244 Identities=13% Similarity=0.168 Sum_probs=157.1
Q ss_pred ceEEEEeeCCCeeecC------CCeEEEEEcCCc--ceeeeeceeeccccccccceeeeeecccCCcEEEEEc-CCCcEE
Q psy6213 7 VHKHGLKADNGLAQPS------RNVFKIFLIKDT--EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA-TNGAVV 77 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g------d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~ 77 (330)
...++++|++++|.+. ++.|..|++... ++...-.... .......++++| ++++|+++. .+|.|.
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-----~g~~p~~i~~~~-~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-----GGSSPCHIAVDP-DGRFLYVANYGGGSVS 112 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-----SSSCEEEEEECT-TSSEEEEEETTTTEEE
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-----CCCCcEEEEEec-CCCEEEEEEccCCeEE
Confidence 4567889999984443 368999988874 3333222221 111236789999 888888776 489999
Q ss_pred EEECCCCCCCceeE-Eec----------ccccceeEEEEEecCCCEEEEEe-cCCcEEEEEeecCc--ee--eeee-cCC
Q psy6213 78 VWNLGQISRSKQER-VFN----------DHKRTVNKVSFHYVESNWLISGS-QDGTMRLFDIRCQE--ST--KIFH-SNT 140 (330)
Q Consensus 78 iw~~~~~~~~~~~~-~~~----------~~~~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~--~~~~-~~~ 140 (330)
++++.......... .+. .......++.++| +++++++.. ....|.+|+++... .. ..+. ...
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 99998742222221 111 1224567899999 777776653 34589999997655 21 2222 244
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCcEEEEecCCC-cc--ceeeecc------CCCCeEEEEEcCCCCEEEEEe-cCCcEEE
Q psy6213 141 ESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP-EK--CFYQFTA------HSGPIFACDWHPEHAWLATAS-RDKTIKV 210 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~-~~--~~~~~~~------~~~~i~~~~~~~~~~~l~~~~-~dg~i~i 210 (330)
...+.++|+|++++++++...++.|.++++... +. .+..... .......+.++|||++|+++. ..+.|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 668999999999987788788899999998822 21 1111111 112578899999999887766 5667999
Q ss_pred EeCCCC-cccc--ceec-cccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 211 WDLSIK-PSLE--YSIN-TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 211 ~d~~~~-~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
|++... ..+. .... .......++++|+|++|+++.. .++.|.+|++.
T Consensus 272 f~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~--~s~~v~vf~~d 322 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ--DSNTVSVFDID 322 (345)
T ss_dssp EEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEE
T ss_pred EEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec--CCCeEEEEEEe
Confidence 999432 1211 1222 2445899999999999888887 78999999875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-12 Score=105.90 Aligned_cols=278 Identities=13% Similarity=0.137 Sum_probs=186.8
Q ss_pred ccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCC---------
Q psy6213 5 SPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG--------- 74 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------- 74 (330)
-++..++|||.|+++++. -..|.+|.-........+... . |..+.|+| ++.+|.+=+..+
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~--~-------V~~~~fSP-~~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHP--D-------VKYLDFSP-NEKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred cchhheeecCcchheehhhccceEEccccchhheeeeecC--C-------ceecccCc-ccceeeeeccCCccChhhccC
Confidence 467889999999998888 888999998876644333221 1 57889999 999998865433
Q ss_pred ------cEEEEECCCCCCCceeEEecc------------------------------cc---------------cceeEE
Q psy6213 75 ------AVVVWNLGQISRSKQERVFND------------------------------HK---------------RTVNKV 103 (330)
Q Consensus 75 ------~i~iw~~~~~~~~~~~~~~~~------------------------------~~---------------~~i~~i 103 (330)
.+.+||..+ +..+..+.. |+ ..|...
T Consensus 103 p~~~~n~~~vwd~~s---g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dF 179 (561)
T COG5354 103 PFTSKNNVFVWDIAS---GMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDF 179 (561)
T ss_pred CccccCceeEEeccC---ceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeE
Confidence 488999876 222211111 11 335566
Q ss_pred EEEec-CCCEEEE-----EecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec----------CCcEEE
Q psy6213 104 SFHYV-ESNWLIS-----GSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE----------NGTIQQ 167 (330)
Q Consensus 104 ~~~~~-~~~~l~~-----~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------dg~i~i 167 (330)
.|+|. +...|+. .+..+++++|.+..+..+.+-.-....=..+.|.+.|+++++-.-. ...+++
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 66663 2233332 3456677788776555544433233334567899999876554321 256888
Q ss_pred EecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe--cCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEe
Q psy6213 168 WDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS--RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASC 245 (330)
Q Consensus 168 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 245 (330)
++++. ..+.......++|...+|.|.++.+++.+ .+-.+.++|++.. +.. ......=..+.|+|.+++++..+
T Consensus 260 ~~~~e--~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~-~~Pe~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 260 LRITE--RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRF-YFPEQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred Eeecc--cccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEE-ecCCcccccccccCcccEEEEec
Confidence 88884 22333335678999999999888776655 7788999999876 222 22345556788999999988877
Q ss_pred ecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeec------CCeEeeeecc
Q psy6213 246 SLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR------VSIIPRAKNI 302 (330)
Q Consensus 246 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~iw~~~ 302 (330)
-....|.+.+||.......+..+.+.. -.-+.|+||++++.+... |..+.+|+..
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 644678999999987766444555433 345679999999888753 6778999754
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.2e-13 Score=110.26 Aligned_cols=229 Identities=16% Similarity=0.188 Sum_probs=172.0
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEec---ccccceeEEEEE------e-------------cCCCEEEEEecCC
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFN---DHKRTVNKVSFH------Y-------------VESNWLISGSQDG 120 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~i~~i~~~------~-------------~~~~~l~~~~~d~ 120 (330)
...++|....||.+++|+... .+....+. .-.+...+..|. | .+...++-|...|
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~---~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAK---NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred hhheEeecCCCCeEEEEEccC---ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 678999999999999999988 34433332 223444555552 1 1345678888899
Q ss_pred cEEEEEeecCceeeeee--cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCE
Q psy6213 121 TMRLFDIRCQESTKIFH--SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAW 198 (330)
Q Consensus 121 ~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 198 (330)
.|.+|+...++....+. .|.+.|.++.++.+-. .|.+++.|+.+..|+... ...+...+..+..+.+++.+|||..
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~~~ 158 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKE-KVIIRIWKEQKPLVSSLCISPDGKI 158 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEeccc-ceeeeeeccCCCccceEEEcCCCCE
Confidence 99999999998877776 4888999999988877 699999999999999987 6777888888888999999999999
Q ss_pred EEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCC-----CCeEEEEeecccCCeEEEEEccCCC---ccceEeec
Q psy6213 199 LATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQ-----RKFHLASCSLVVDSSVNVWDIRRPY---IPLASFTE 270 (330)
Q Consensus 199 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~~~~~~~i~i~d~~~~~---~~~~~~~~ 270 (330)
+++++. +|++||+++++.+..+.+|.++|.++.|.-+ |.+++.+.. .+..+.+|-+.... .....+..
T Consensus 159 l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~v~~~~kkks~~~sl~~ 234 (541)
T KOG4547|consen 159 LLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWVVEKEDKKKSLSCSLTV 234 (541)
T ss_pred EEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEEEEcccccchhheeecc
Confidence 999875 8999999999999999999999999999887 888888887 67888888776422 11333333
Q ss_pred CCCCeEEEEEec-CCC---EEEEeecCCeEeeee
Q psy6213 271 HKDVVSGLAWRG-DPQ---LFIASSRVSIIPRAK 300 (330)
Q Consensus 271 ~~~~v~~~~~~~-~~~---~l~s~~~dg~i~iw~ 300 (330)
..-++..=.+.. |+. .+++.-.+|.+..+.
T Consensus 235 ~dipv~~ds~~~ed~~~~l~lAst~~~g~v~~~~ 268 (541)
T KOG4547|consen 235 PDIPVTSDSGLLEDGTIPLVLASTLIPGIVHLKL 268 (541)
T ss_pred CCCCeEeccccccccccceEEeeeccCceeeecc
Confidence 333443322222 332 445555566665553
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-11 Score=96.49 Aligned_cols=271 Identities=13% Similarity=0.122 Sum_probs=178.1
Q ss_pred CCcccceEEEEeeCCCeeecC-----CCeEEEEEcCC--cceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-C
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-----RNVFKIFLIKD--TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-N 73 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-----d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d 73 (330)
++.+..+=|+|+|+++.|.++ +|.|.-|.++. |++...-..... ..+.+.++.++ ++++++++.. .
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~-----g~~p~yvsvd~-~g~~vf~AnY~~ 110 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP-----GSPPCYVSVDE-DGRFVFVANYHS 110 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC-----CCCCeEEEECC-CCCEEEEEEccC
Confidence 355678889999999874443 67888888875 443322111110 11127789998 8988888865 4
Q ss_pred CcEEEEECCCCCCCceeEEecccccc----------eeEEEEEecCCCEEEEEec-CCcEEEEEeecCceeeeee---cC
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRT----------VNKVSFHYVESNWLISGSQ-DGTMRLFDIRCQESTKIFH---SN 139 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~----------i~~i~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~---~~ 139 (330)
|.|.++-+...+..........|.+. +....+.| +++++++... --.|.+|++..++....-. ..
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 78999998764433333333345554 88899999 8888887643 2379999999776432211 24
Q ss_pred CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc---------CCCCeEEEEEcCCCCEEEEEec-CCcEE
Q psy6213 140 TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA---------HSGPIFACDWHPEHAWLATASR-DKTIK 209 (330)
Q Consensus 140 ~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~-dg~i~ 209 (330)
....+.|.|+|++++..+..--+++|-+|........+..++. .......|..+|+|++|.++.. ...|.
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 5568899999999976677777999999998874333333322 2345778999999999988763 33688
Q ss_pred EEeCCCCccccc----eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee--cCCCCeEEEEEe
Q psy6213 210 VWDLSIKPSLEY----SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT--EHKDVVSGLAWR 281 (330)
Q Consensus 210 i~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~ 281 (330)
+|.+........ ...+........|+|.+++|+++.. ++..|.+|......-.+..+. .......|+.|.
T Consensus 270 ~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q--~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 270 VFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ--KSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc--CCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 887754422111 1223344788999999999888887 677899998765432233222 223345566553
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-12 Score=112.02 Aligned_cols=205 Identities=10% Similarity=0.064 Sum_probs=134.5
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC---CcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD---GTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
.|.++|.+. .. ...+..+...+....|+| +++.|+..+.+ ..|.+||+.+++... +....+......|+|+
T Consensus 180 ~l~~~d~~g---~~-~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDG---AR-AVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPD 253 (430)
T ss_pred EEEEECCCC---CC-ceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCC
Confidence 366677664 22 334445667889999999 77877765543 369999998876543 3323344567899999
Q ss_pred CCcEEEEEecCC--cEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec-CC--cEEEEeCCCCccccceeccc
Q psy6213 152 SPYAFASVSENG--TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR-DK--TIKVWDLSIKPSLEYSINTI 226 (330)
Q Consensus 152 ~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~ 226 (330)
|+.++++...+| .|+++|+.++ . ...+..+........|+|+|+.++..+. +| .|.++|+.+++..... ...
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~-~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~ 330 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASR-Q-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVG 330 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCC-C-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCC
Confidence 997666666665 5888898863 2 3344555556677899999998776653 33 5777787766432221 122
Q ss_pred cceEEEEEcCCCCeEEEEeecccCC--eEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDS--SVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
.......|+|+|++++.... .++ .|.++|+.+++. ..+.. ........|+|||+.++..+.+
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~--~~~~~~l~~~dl~tg~~--~~lt~-~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHR--QDGNFHVAAQDLQRGSV--RILTD-TSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCccceEECCCCCEEEEEEc--cCCceEEEEEECCCCCE--EEccC-CCCCCCceECCCCCEEEEEEec
Confidence 33446789999998777664 233 688899987753 22322 2222356899999999887654
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-12 Score=111.46 Aligned_cols=205 Identities=14% Similarity=0.094 Sum_probs=130.8
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec-CC--cEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ-DG--TMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
.+.++|.+. .. .+.+..+...+....|+| +++.|+..+. ++ .|++||+.+++... +..........+|+|+
T Consensus 199 ~l~i~d~dG---~~-~~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDG---YN-EQMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCC---CC-ceEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCC
Confidence 566667654 22 233445667888999999 7777776543 33 58889988776533 2222333457899999
Q ss_pred CCcEEEEEecCCc--EEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec-CC--cEEEEeCCCCccccceeccc
Q psy6213 152 SPYAFASVSENGT--IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR-DK--TIKVWDLSIKPSLEYSINTI 226 (330)
Q Consensus 152 ~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~ 226 (330)
++.++++.+.+|. |+++|+.++ + ...+..+........|+|||+.|+..+. ++ .|.++|+.+++.... ....
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg-~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g 349 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATK-A-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEG 349 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCC-C-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCC
Confidence 9976666777775 777788753 2 3444445556678899999998876653 33 466677776643221 1122
Q ss_pred cceEEEEEcCCCCeEEEEeecccCC--eEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDS--SVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
......+|+|||++++.+.. .++ .|.++|+.++.. ..+... .......|+|||+.|+..+.+
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~--~~g~~~I~~~dl~~g~~--~~lt~~-~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNR--TNGKFNIARQDLETGAM--QVLTST-RLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred CCCcCeeECCCCCEEEEEEe--cCCceEEEEEECCCCCe--EEccCC-CCCCCceECCCCCEEEEEEec
Confidence 23345789999998777665 344 566678777653 233222 122345799999988776654
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-12 Score=107.95 Aligned_cols=189 Identities=14% Similarity=0.258 Sum_probs=147.5
Q ss_pred CCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeec------c-------------cCCcEEEEEcCC
Q psy6213 15 DNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWS------C-------------IEENHIATGATN 73 (330)
Q Consensus 15 ~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~-------------~~~~~l~~~~~d 73 (330)
-+.+++.. ||.++||+...++....+... ......+++..|. | .+...++-|...
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~----~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPI----ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccc----hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 34453333 999999999998876655422 2233334555553 2 134578888999
Q ss_pred CcEEEEECCCCCCCceeEEe--cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 74 GAVVVWNLGQISRSKQERVF--NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
|.|.+|+... ++....+ ..|.+.|.++.++. +-..|.+++.|+.+..|+...++.++.++..+..+.+++.+||
T Consensus 80 g~v~~ys~~~---g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 80 GSVLLYSVAG---GEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD 155 (541)
T ss_pred ccEEEEEecC---CeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence 9999999987 4444444 47999999999984 8889999999999999999999999999998999999999999
Q ss_pred CCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC-----CCEEEEE-ecCCcEEEEeCCC
Q psy6213 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE-----HAWLATA-SRDKTIKVWDLSI 215 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~-~~dg~i~i~d~~~ 215 (330)
+. ++++++ ++|++||+++ .+.+..|.+|.++|+++.|-.+ |.+++++ ..+.-+.+|-...
T Consensus 156 ~~-~l~~as--~~ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 GK-ILLTAS--RQIKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CC-EEEecc--ceEEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98 677776 6899999998 7889999999999999999876 6666554 3555677886654
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.3e-13 Score=99.83 Aligned_cols=247 Identities=19% Similarity=0.218 Sum_probs=161.3
Q ss_pred cceEEEEee---CCCe--eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 6 PVHKHGLKA---DNGL--AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 6 ~v~~~~~s~---~~~~--~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.++.|.|.. +|.+ +-+- +|.|.++.....+....+..-........ ...++.|++ .+..++++..+|.+.+-
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~-~~lslD~~~-~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV-EALSLDIST-SGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe-eeeEEEeec-cCceEEEEcCCCcEEEE
Confidence 355555553 4443 3333 88888887665433222221111111111 136788998 88889999999999855
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec-Cceeee-eecCCCCeEEEEEcCCCCcEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC-QESTKI-FHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~-~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
+... ...+..+.++.|+-++....|+..+.+++.+|+.|+.+..||++. ++.+.. .+.|...|.++.-+|..++.++
T Consensus 149 ~~t~-~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 149 YETE-MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred ecce-eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence 5443 123444578899999999999988889999999999999999993 333333 3458889999999988887899
Q ss_pred EEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC--CCEEEEEecCCcEEEEeCCCCccc-----cceeccccceE
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE--HAWLATASRDKTIKVWDLSIKPSL-----EYSINTIASVS 230 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~v~ 230 (330)
+|+.|-.|++||.|+-++++..-. -.+.|..+.++|. +.+|+++-.+ -.+|-+....... .....|.+-..
T Consensus 228 TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e~~~~~~s~~~hdSl~Y 305 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLEFQIVLPSDKIHDSLCY 305 (339)
T ss_pred EeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhc-CceEEEecccccchheeeeccccccceee
Confidence 999999999999998777766544 3488999999994 3344444443 4667776655222 11122334444
Q ss_pred EEEEcCCCCeEEEEeecccCCeEE-EEEcc
Q psy6213 231 RIKWRPQRKFHLASCSLVVDSSVN-VWDIR 259 (330)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~i~-i~d~~ 259 (330)
.-.|..... ++++|+. .|+.++ +|-.-
T Consensus 306 G~DWd~~~~-~lATCsF-YDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 306 GGDWDSKDS-FLATCSF-YDKKIRQLWLHI 333 (339)
T ss_pred ccccccccc-eeeeeec-cccceeeeeeec
Confidence 445533323 4677653 455544 66433
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-12 Score=105.99 Aligned_cols=257 Identities=16% Similarity=0.257 Sum_probs=165.8
Q ss_pred eEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc-CCcEEEE-----EcCCCcEEEEE
Q psy6213 8 HKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI-EENHIAT-----GATNGAVVVWN 80 (330)
Q Consensus 8 ~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~iw~ 80 (330)
++..|++|..+++-- .+.+.+|+..+.+.. ...++. ..++.+.++|. ....+|+ .+.-+.++||.
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~-~~kl~~-------~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~ 200 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTI-QHKLSV-------SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYK 200 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccce-eeeeec-------cceeeEEecCCCCCceEEEEccCCCCCCcEEEEec
Confidence 578888888875555 899999999873221 112222 22588899982 2334443 34456799998
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec--C---------CcEEEEEeecCceeeeeecCCCCeEEEEEc
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ--D---------GTMRLFDIRCQESTKIFHSNTESVRDVEFN 149 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--d---------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 149 (330)
.........+..-.-....=..+.|++.+..+|+.++. | .++++++++.......+. ..++|.++.|+
T Consensus 201 ~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~ 279 (566)
T KOG2315|consen 201 YPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWS 279 (566)
T ss_pred cccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEEC
Confidence 86422222221111122333467888744455554443 2 468888887334443343 57899999999
Q ss_pred CCCCcE-EEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec---CCcEEEEeCCCCccccceecc
Q psy6213 150 PHSPYA-FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR---DKTIKVWDLSIKPSLEYSINT 225 (330)
Q Consensus 150 ~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~ 225 (330)
|++..+ ++.|-.-..+.+||++ ..++..+. .++-+++-|+|.|++++.++. .|.+.+||..+.+.+.....
T Consensus 280 ~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a- 354 (566)
T KOG2315|consen 280 PSGREFAVVYGFMPAKVTIFNLR--GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA- 354 (566)
T ss_pred CCCCEEEEEEecccceEEEEcCC--CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-
Confidence 999742 3335567789999998 45555553 577789999999999998885 47899999998655444333
Q ss_pred ccceEEEEEcCCCCeEEEEeec---ccCCeEEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 226 IASVSRIKWRPQRKFHLASCSL---VVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 226 ~~~v~~~~~~~~~~~l~~~~~~---~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
..-+-..|+|||++++++... ..|+.++||+...... ....- ......+.|-|
T Consensus 355 -~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l--~~~~f-~sEL~qv~W~P 410 (566)
T KOG2315|consen 355 -ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL--HEKMF-KSELLQVEWRP 410 (566)
T ss_pred -CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee--ehhhh-hHhHhheeeee
Confidence 345567999999997776652 2488999999875432 21111 11577788876
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-11 Score=99.07 Aligned_cols=196 Identities=14% Similarity=0.200 Sum_probs=137.4
Q ss_pred EeeCCCeeecC-CCeEEEEEcCCcceeeeec-eeec---cccccccceeeee-ecccCCcEEEEEcCCCcEEEEECCCCC
Q psy6213 12 LKADNGLAQPS-RNVFKIFLIKDTEFVETHN-LRVG---KNINLNFSCNDVA-WSCIEENHIATGATNGAVVVWNLGQIS 85 (330)
Q Consensus 12 ~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~-~~~~---~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~iw~~~~~~ 85 (330)
.+.||+.++-. .|.|.+||.++..+...-- ++.. .......+..-+. |++.+|++++..+. |...+.+...
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~-- 350 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWD-- 350 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCC--
Confidence 35688887777 8999999998865443211 1111 1111111111222 55567999998885 6677776544
Q ss_pred CCceeEEecccccceeEEEEEecCCCEEEEEecCC-cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 86 RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG-TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 86 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
+..++ -++...|.-..+.- +++-++.|..|| .+-++|.++++.. .+...-+.|.++..+|+|++ ++++.....
T Consensus 351 -~~~iq--v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~-~vvaNdr~e 424 (668)
T COG4946 351 -GYSIQ--VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKK-VVVANDRFE 424 (668)
T ss_pred -CeeEE--cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcE-EEEEcCceE
Confidence 22222 24667788777775 677899999999 8999999977644 45556778999999999994 778888888
Q ss_pred EEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCC----cEEEEeCCCCc
Q psy6213 165 IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDK----TIKVWDLSIKP 217 (330)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 217 (330)
+-+.|+.+ +.....-+...+-|+.++|+|+++++|-+--+| .|+++|+.+++
T Consensus 425 l~vididn-gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 425 LWVIDIDN-GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEEEEecC-CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 99999998 444444444567899999999999999887655 58999988763
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=119.19 Aligned_cols=194 Identities=22% Similarity=0.283 Sum_probs=150.3
Q ss_pred EEEeeCCCe--eecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC
Q psy6213 10 HGLKADNGL--AQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS 87 (330)
Q Consensus 10 ~~~s~~~~~--~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 87 (330)
..+.-+.+. ++++++.+.+||...+.......... ...-+++.-+-+++ +.-++++|+.-+.|.+|+... .
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e---r~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~---d 165 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE---RCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHE---D 165 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCc---eEEEEeEEEEeccC-cEEEEEeccccccEEEEeccc---c
Confidence 334444455 33338999999998766554433221 12222233344566 778999999999999999874 2
Q ss_pred ceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee-eeecCCCCeEEEEEcCCCCcEEEEEecCCcEE
Q psy6213 88 KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK-IFHSNTESVRDVEFNPHSPYAFASVSENGTIQ 166 (330)
Q Consensus 88 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~ 166 (330)
+....+.+|++.|..+.|+- +++++++.++|.++++|++++.+... ..-+|...+..+.|.|+ .+++++.|-+.+
T Consensus 166 n~p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcr 241 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCR 241 (967)
T ss_pred CCcceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEE
Confidence 33336889999999999996 99999999999999999999988766 66679999999999998 499999999999
Q ss_pred EEecCCCccceeeeccCC-CCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC
Q psy6213 167 QWDVRRPEKCFYQFTAHS-GPIFACDWHPEHAWLATASRDKTIKVWDLSIK 216 (330)
Q Consensus 167 i~d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 216 (330)
+|+.. ......+..|. ..|..++..++....++++.|+.+++||+...
T Consensus 242 vW~~~--~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 242 VWGVN--GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEecc--cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99766 34455777775 46899999999999999999999999998644
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-12 Score=107.75 Aligned_cols=237 Identities=16% Similarity=0.203 Sum_probs=157.9
Q ss_pred cccceeeeeecccCCcE-EEEEcCCCcEEEEECCCCCCCceeEEeccc-ccceeEEEEEecCCCEEEEEecCCcEEEEEe
Q psy6213 50 LNFSCNDVAWSCIEENH-IATGATNGAVVVWNLGQISRSKQERVFNDH-KRTVNKVSFHYVESNWLISGSQDGTMRLFDI 127 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~ 127 (330)
+....+.+..+| +|++ +|+|...-.|++||+.+ ... .+..| ...+..+....++-..++--..|.+|.+...
T Consensus 50 ~p~ast~ik~s~-DGqY~lAtG~YKP~ikvydlan---LSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 50 MPTASTRIKVSP-DGQYLLATGTYKPQIKVYDLAN---LSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CccccceeEecC-CCcEEEEecccCCceEEEEccc---cee--eeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 334468899999 7665 56777888999999976 222 22223 2333333333245555666666777765432
Q ss_pred ecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCc
Q psy6213 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKT 207 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 207 (330)
- |... .++ -...-..++++.-..- ++.++....|+-+++.. +..+..+....+.++++..++...+|++|+.+|.
T Consensus 124 ~-G~hy-~~R-IP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEq-GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 124 Y-GRHY-RTR-IPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQ-GRFLNPFETDSGELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred c-Ceee-eee-cCcCCccccccCCCcc-EEEeecCcceEEEEccc-cccccccccccccceeeeecCccceEEecccCce
Confidence 2 2211 111 1223445666654443 44555566899999998 6777777777789999999999999999999999
Q ss_pred EEEEeCCCCcccccee------cc-----ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeE
Q psy6213 208 IKVWDLSIKPSLEYSI------NT-----IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVS 276 (330)
Q Consensus 208 i~i~d~~~~~~~~~~~------~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~ 276 (330)
+..||.+......... .+ ...|+++.|+.+|-. ++.+. .+|.+.|||++..+..+..-.+..-+|.
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~ 275 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGT--STGSVLIYDLRASKPLLVKDHGYELPIK 275 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee-EEeec--cCCcEEEEEcccCCceeecccCCcccee
Confidence 9999998874422211 11 234999999999887 44444 5999999999988753333344456899
Q ss_pred EEEEecC--CCEEEEeecCCeEeeeec
Q psy6213 277 GLAWRGD--PQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 277 ~~~~~~~--~~~l~s~~~dg~i~iw~~ 301 (330)
.+.|.+. ++.+++ .....++||+.
T Consensus 276 ~l~~~~~~~q~~v~S-~Dk~~~kiWd~ 301 (703)
T KOG2321|consen 276 KLDWQDTDQQNKVVS-MDKRILKIWDE 301 (703)
T ss_pred eecccccCCCceEEe-cchHHhhhccc
Confidence 9999874 444544 34567899974
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-11 Score=94.26 Aligned_cols=225 Identities=13% Similarity=0.176 Sum_probs=155.0
Q ss_pred CCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec---CCcEEEEEeec--Ccee--eeeecCCCCeEE
Q psy6213 73 NGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ---DGTMRLFDIRC--QEST--KIFHSNTESVRD 145 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---d~~i~i~d~~~--~~~~--~~~~~~~~~v~~ 145 (330)
+..|.+|++++..........-...+..+-++|+| +++.|.++.. +|.|..|.++. |+.. ........+.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 45699999985332222233345668889999998 7777877755 47788887764 4332 222223345588
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEecCCCcccee--eeccCCCC----------eEEEEEcCCCCEEEEEec-CCcEEEEe
Q psy6213 146 VEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY--QFTAHSGP----------IFACDWHPEHAWLATASR-DKTIKVWD 212 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~----------i~~~~~~~~~~~l~~~~~-dg~i~i~d 212 (330)
+++++++++++.+....|.|.++-++..+.+.. ....|.+. +....+.|++++|++... -..|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 999999998777777789999999976443322 22234444 888999999999988763 34699999
Q ss_pred CCCCcc---ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC---------CCCeEEEEE
Q psy6213 213 LSIKPS---LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH---------KDVVSGLAW 280 (330)
Q Consensus 213 ~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~~v~~~~~ 280 (330)
+..++. .............+.|+|++++..+.+. .+++|.+|........+..++.+ .....++..
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 987643 2223355678899999999998777777 89999999998742223333322 235678889
Q ss_pred ecCCCEEEEeecC-CeEeeee
Q psy6213 281 RGDPQLFIASSRV-SIIPRAK 300 (330)
Q Consensus 281 ~~~~~~l~s~~~d-g~i~iw~ 300 (330)
+|||++|.++..- ..|-+|+
T Consensus 252 s~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEE
Confidence 9999999987542 2455554
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-12 Score=102.93 Aligned_cols=276 Identities=9% Similarity=0.154 Sum_probs=183.9
Q ss_pred eEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-----------CCc
Q psy6213 8 HKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-----------NGA 75 (330)
Q Consensus 8 ~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~ 75 (330)
+-+.|||-|.||++- ...|.+|--++-...+.+..+ + |.-+.||| +.++|++-+. ...
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~--------Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-G--------VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCccHHHHHhccCC-C--------ceeeecCC-ccceEEEecCCccccCcccCCCce
Confidence 457899999998888 888999976664433333211 1 47789999 9999998643 256
Q ss_pred EEEEECCCCCCCceeEEeccc--ccc-eeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCC
Q psy6213 76 VVVWNLGQISRSKQERVFNDH--KRT-VNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHS 152 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~~~--~~~-i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 152 (330)
++|||+.+ +...+.+... ... -.-+.||. +++++|.-.. ..|.||+.....++..-...-..|....|+|.+
T Consensus 284 l~IWDI~t---G~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~ 358 (698)
T KOG2314|consen 284 LIIWDIAT---GLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTS 358 (698)
T ss_pred EEEEEccc---cchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCc
Confidence 99999999 5555555432 222 23468997 8898887776 479999987644433322344678899999998
Q ss_pred CcEEEEEecC-----CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe----------cCCcEEEEeCCCCc
Q psy6213 153 PYAFASVSEN-----GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS----------RDKTIKVWDLSIKP 217 (330)
Q Consensus 153 ~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~ 217 (330)
. +|+--... ..+.+..+.+ .+.+++..-+.-.=..+-|-.+|.+|+.-- .-..+.|+.++...
T Consensus 359 ~-llAYwtpe~~~~parvtL~evPs-~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd 436 (698)
T KOG2314|consen 359 N-LLAYWTPETNNIPARVTLMEVPS-KREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD 436 (698)
T ss_pred c-eEEEEcccccCCcceEEEEecCc-cceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC
Confidence 7 56543321 2355555554 333444443433334567777888877532 12236777777776
Q ss_pred cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc-CCCcc--ceEeecCCCCeEEEEEecCCCEEEEee---
Q psy6213 218 SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR-RPYIP--LASFTEHKDVVSGLAWRGDPQLFIASS--- 291 (330)
Q Consensus 218 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~--- 291 (330)
...........+...+|-|.|..+.+..++....++++|.++ +...+ +..+. ....+.+.|+|.|++++.+.
T Consensus 437 Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 437 IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecc
Confidence 666777778899999999999876555553345789999988 33322 22332 24578899999999988864
Q ss_pred cCCeEeeeecc
Q psy6213 292 RVSIIPRAKNI 302 (330)
Q Consensus 292 ~dg~i~iw~~~ 302 (330)
..|.+.+++..
T Consensus 515 ~~g~l~F~D~~ 525 (698)
T KOG2314|consen 515 RRGDLEFYDTD 525 (698)
T ss_pred cccceEEEecc
Confidence 46778887643
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-12 Score=106.76 Aligned_cols=221 Identities=14% Similarity=0.076 Sum_probs=132.8
Q ss_pred ccceEEEEeeCCCe--e--ecC-C--CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-CC--
Q psy6213 5 SPVHKHGLKADNGL--A--QPS-R--NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-NG-- 74 (330)
Q Consensus 5 ~~v~~~~~s~~~~~--~--~~g-d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg-- 74 (330)
+.+..-+|+|||+. + ++. + ..|.+.++.+++.......... ....+|+| +++.|+..+. +|
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~--------~~~p~wSP-DG~~Laf~s~~~g~~ 255 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN--------QLMPTFSP-RKKLLAFISDRYGNP 255 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC--------ccceEECC-CCCEEEEEECCCCCc
Confidence 45567799999974 2 333 3 4677778887765443332221 25679999 8887776542 23
Q ss_pred --cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEe-cCCcEEEEE--eec-CceeeeeecCCCCeEEEEE
Q psy6213 75 --AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGS-QDGTMRLFD--IRC-QESTKIFHSNTESVRDVEF 148 (330)
Q Consensus 75 --~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d--~~~-~~~~~~~~~~~~~v~~~~~ 148 (330)
.+..|++......................+|+| +++.|+..+ .+|...+|. +.. +.....+......+....|
T Consensus 256 di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 256 DLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred ceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence 234466654211222333333333456789999 777666554 466555554 432 2233444444456778899
Q ss_pred cCCCCcEEEEEecC--CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec---CCcEEEEeCCCCcccccee
Q psy6213 149 NPHSPYAFASVSEN--GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR---DKTIKVWDLSIKPSLEYSI 223 (330)
Q Consensus 149 ~~~~~~~~~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~ 223 (330)
+|+|+.++++...+ ..|.+||+.++. . ..+......+....|+|||+.|+.... ...|.++|+..++. ....
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~-~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~Lt 411 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDLATGR-D-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-RKIV 411 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCC-e-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEee
Confidence 99999655555443 368999998743 2 333333445678999999998875543 34688889887643 2223
Q ss_pred ccccceEEEEEcCCC
Q psy6213 224 NTIASVSRIKWRPQR 238 (330)
Q Consensus 224 ~~~~~v~~~~~~~~~ 238 (330)
...+.+...+|+|-.
T Consensus 412 ~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 412 IGSGEKRFPSWGAFP 426 (428)
T ss_pred cCCCcccCceecCCC
Confidence 344556677887753
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-11 Score=89.22 Aligned_cols=226 Identities=12% Similarity=0.064 Sum_probs=151.9
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCC
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES 142 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 142 (330)
...+||.|+..|.+.+|...+. .........|...|+-+.=..+...-+..++.|.++++.++..+..........-.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn--~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTN--DGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred cccEEEeccccceeeeecccCc--ccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 4678999999999999998862 22233333343333222111123344677788999999998765444433323234
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceee--eccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc-
Q psy6213 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ--FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL- 219 (330)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~- 219 (330)
..+++++++++ ++++.++...|..|.+......+.. .......-.+..|+.....+|++..||++.|||++....+
T Consensus 161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 88999999999 5888888899999998875543332 3334455678899999999999999999999999877432
Q ss_pred ----cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee-------cCC-CCeEEEEEecCCCEE
Q psy6213 220 ----EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT-------EHK-DVVSGLAWRGDPQLF 287 (330)
Q Consensus 220 ----~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~-------~~~-~~v~~~~~~~~~~~l 287 (330)
.....|.+.+..+.|++.|..=+.--++ .-+.+.+.|+++... .+.+. .|. ..|.+-.|+.++..+
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE-hfs~~hv~D~R~~~~-~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~ 317 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISE-HFSRVHVVDTRNYVN-HQVIVIPDDVERKHNTQHIFGTNFNNENESN 317 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcceEEEEec-CcceEEEEEcccCce-eeEEecCccccccccccccccccccCCCccc
Confidence 2233478899999999876532222221 478999999998864 22222 222 337777887777666
Q ss_pred EEeecC
Q psy6213 288 IASSRV 293 (330)
Q Consensus 288 ~s~~~d 293 (330)
.+.+++
T Consensus 318 ~v~~e~ 323 (344)
T KOG4532|consen 318 DVKNEL 323 (344)
T ss_pred ccccch
Confidence 666554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.5e-10 Score=90.06 Aligned_cols=258 Identities=9% Similarity=-0.015 Sum_probs=160.6
Q ss_pred CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC----------CCcEEEEECCCCCCCceeEEe
Q psy6213 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT----------NGAVVVWNLGQISRSKQERVF 93 (330)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~ 93 (330)
+.|.+.|.++++.+..+...... ..+ ++| +++.|+++.. +..|.+||..+ .+....+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--------~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t---~~~~~~i 93 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--------NPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQT---HLPIADI 93 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--------cee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECcc---CcEEeEE
Confidence 89999999998887766543321 334 898 7777776655 67899999998 6666555
Q ss_pred ccc-------ccceeEEEEEecCCCEEEEEe-c-CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 94 NDH-------KRTVNKVSFHYVESNWLISGS-Q-DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 94 ~~~-------~~~i~~i~~~~~~~~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
..- ...-..++++| +++++++.. . +..|.+.|+.+++.+.++.... ...-...+++. +.+-+.||.
T Consensus 94 ~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~---~~~~~~Dg~ 168 (352)
T TIGR02658 94 ELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT---FFMHCRDGS 168 (352)
T ss_pred ccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc---cEEEeecCc
Confidence 432 12334788998 888888765 3 6899999999999988877422 22222222222 122334555
Q ss_pred EEEEecCCCccce-e---eeccCCCCeE-EEEEcC-CCCEEEEEecCCcEEEEeCCCCcc----ccceec--------cc
Q psy6213 165 IQQWDVRRPEKCF-Y---QFTAHSGPIF-ACDWHP-EHAWLATASRDKTIKVWDLSIKPS----LEYSIN--------TI 226 (330)
Q Consensus 165 i~i~d~~~~~~~~-~---~~~~~~~~i~-~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~--------~~ 226 (330)
.....+...++.. . .+.....++. .-.|.+ +|+++..... |.|.+.|+..... ...... ..
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP 247 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence 4444333322211 0 1111001100 003455 8888877776 9999999654321 111110 12
Q ss_pred cceEEEEEcCCCCeEEEEeec-------ccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCC-EEEEee-cCCeEe
Q psy6213 227 ASVSRIKWRPQRKFHLASCSL-------VVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ-LFIASS-RVSIIP 297 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~-------~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~ 297 (330)
....-++++|+++.+++.... ...+.|.++|..+.+. +..+.. ...+.+++++||++ .|++.. .++.|.
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv-i~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR-LRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE-EEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEE
Confidence 334459999999987774420 0236899999998876 444442 45799999999999 888666 578899
Q ss_pred eeecc
Q psy6213 298 RAKNI 302 (330)
Q Consensus 298 iw~~~ 302 (330)
+.+..
T Consensus 326 ViD~~ 330 (352)
T TIGR02658 326 IFDAE 330 (352)
T ss_pred EEECc
Confidence 98743
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-12 Score=96.33 Aligned_cols=240 Identities=19% Similarity=0.340 Sum_probs=166.1
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCC--CCceeEEecccc------------cceeEEEEEe-cCCCEEEEEec
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQIS--RSKQERVFNDHK------------RTVNKVSFHY-VESNWLISGSQ 118 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~~------------~~i~~i~~~~-~~~~~l~~~~~ 118 (330)
|+++.|.. .|.+|++|...|.|.+|.-+... +.+....++.|. ..|..+.|.. .+...++..+.
T Consensus 29 ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN 107 (460)
T COG5170 29 ITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN 107 (460)
T ss_pred eeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence 68999998 99999999999999999876521 122333344443 4578888864 23346777788
Q ss_pred CCcEEEEEeecCce------------------------------------------eeee-ecCCCCeEEEEEcCCCCcE
Q psy6213 119 DGTMRLFDIRCQES------------------------------------------TKIF-HSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 119 d~~i~i~d~~~~~~------------------------------------------~~~~-~~~~~~v~~~~~~~~~~~~ 155 (330)
|.+|++|.+..... .+.+ ..|.-.+.++.|..+.+.
T Consensus 108 dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et- 186 (460)
T COG5170 108 DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET- 186 (460)
T ss_pred CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe-
Confidence 99999998753200 0011 234555788899888873
Q ss_pred EEEEecCCcEEEEecCCCccce--eeeccCC-----CCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCcc-----cc--
Q psy6213 156 FASVSENGTIQQWDVRRPEKCF--YQFTAHS-----GPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPS-----LE-- 220 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~~~~~--~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-----~~-- 220 (330)
+++ .+|-.|.+|++....... ..+++|. .-|++..|+|. ...+.-.+..|.|++-|++.... ..
T Consensus 187 ~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe 265 (460)
T COG5170 187 LLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE 265 (460)
T ss_pred eee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence 544 457789999987644432 2334443 35889999995 45677777889999999984321 10
Q ss_pred ---------ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCC------------CCe---E
Q psy6213 221 ---------YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK------------DVV---S 276 (330)
Q Consensus 221 ---------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~------------~~v---~ 276 (330)
....-...|..+.|+++|++ +++-+ --++++||++..+.|+.+..-|. ..| .
T Consensus 266 ~~~D~v~~~ff~eivsSISD~kFs~ngry-IlsRd---yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 266 LTIDGVDVDFFEEIVSSISDFKFSDNGRY-ILSRD---YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hccCcccchhHHHHhhhhcceEEcCCCcE-EEEec---cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 11112356889999999997 55553 78999999999888888886654 223 3
Q ss_pred EEEEecCCCEEEEeecCCeEeeee
Q psy6213 277 GLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 277 ~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
.+.|+.|...+.+|+.....-++-
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEecCCcccccccccccceeeec
Confidence 467888888999999888777774
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-10 Score=107.47 Aligned_cols=244 Identities=13% Similarity=0.146 Sum_probs=156.1
Q ss_pred eEEEEeeC-CCeeecC--CCeEEEEEcCCcceeeeece--eecc------ccccccceeeeeecccCCcEEEEE-cCCCc
Q psy6213 8 HKHGLKAD-NGLAQPS--RNVFKIFLIKDTEFVETHNL--RVGK------NINLNFSCNDVAWSCIEENHIATG-ATNGA 75 (330)
Q Consensus 8 ~~~~~s~~-~~~~~~g--d~~i~iw~~~~~~~~~~~~~--~~~~------~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~ 75 (330)
..++++++ +.+.++. ++.|+++|... ........ ..+. ..... ....+++.+ +++.|+++ ..++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~-~P~GIavd~-~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFN-RPQGLAYNA-KKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccC-CCcEEEEeC-CCCEEEEEeCCCce
Confidence 35788875 5554444 88999999864 33322211 0000 00111 237899998 67765555 44577
Q ss_pred EEEEECCCCCCCceeEEeccc-----------------ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec
Q psy6213 76 VVVWNLGQISRSKQERVFNDH-----------------KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS 138 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~~~-----------------~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 138 (330)
|+.+|+.+ . .+.++.+. -..-..++++|.++.++++.+.++.|++||..++... .+.+
T Consensus 648 Ir~id~~~---~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 648 LREIDFVN---E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred EEEEecCC---C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 99999865 2 22222110 0123578999856677777778899999998766432 1211
Q ss_pred ---------------CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceee------------ecc--------C
Q psy6213 139 ---------------NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ------------FTA--------H 183 (330)
Q Consensus 139 ---------------~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~------------~~~--------~ 183 (330)
.-.....++++|++++++++-+.++.|++||+.++...... +.. .
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 01235679999999877778788899999999864321100 000 0
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee-------------ccccceEEEEEcCCCCeEEEEeecccC
Q psy6213 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI-------------NTIASVSRIKWRPQRKFHLASCSLVVD 250 (330)
Q Consensus 184 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~~~~~ 250 (330)
......++++++|+++++-..++.|++||..++....... ........++++++|+. +++.. .+
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~l-yVaDt--~N 879 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRL-FVADT--NN 879 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCE-EEEEC--CC
Confidence 1134688999999998888999999999998763321110 11235778999999985 55555 59
Q ss_pred CeEEEEEccCCC
Q psy6213 251 SSVNVWDIRRPY 262 (330)
Q Consensus 251 ~~i~i~d~~~~~ 262 (330)
+.|++||+.++.
T Consensus 880 n~Irvid~~~~~ 891 (1057)
T PLN02919 880 SLIRYLDLNKGE 891 (1057)
T ss_pred CEEEEEECCCCc
Confidence 999999998765
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=120.85 Aligned_cols=219 Identities=17% Similarity=0.312 Sum_probs=158.9
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEec-ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
|.++.=+| ...+.++|+.||.+++|.... +..+..++ .-...++.+.|+. .|+.+..+..||.+.+|.+. .++
T Consensus 2211 v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~---~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2211 VRRMTSHP-SDPYYLTGSQDGSVRMFEWGH---GQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred eeeecCCC-CCceEEecCCCceEEEEeccC---CCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Ccc
Confidence 46677777 788899999999999999876 44444433 2238899999997 88889999999999999987 667
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEE---ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASV---SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
....+.|......+.|-.. +++++ +.++.+.+||...+...-..-..|.+.++++++.|..++|++|+.+|.++
T Consensus 2285 ~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred eeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 7778888888888888763 46665 35788999998754443333478999999999999999999999999999
Q ss_pred EEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee-cC--CC--CeEEEEE-ecC
Q psy6213 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT-EH--KD--VVSGLAW-RGD 283 (330)
Q Consensus 210 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~--~~--~v~~~~~-~~~ 283 (330)
+||++..+....... ++ ...+ +++++ ..|.++||++..... +..+. .| .+ ...++.. --.
T Consensus 2362 l~D~rqrql~h~~~~---------~~-~~~~-f~~~s--s~g~ikIw~~s~~~l-l~~~p~e~ak~gfFr~~g~Q~~v~~ 2427 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA---------LD-TREY-FVTGS--SEGNIKIWRLSEFGL-LHTFPSEHAKQGFFRNIGMQINVGQ 2427 (2439)
T ss_pred EeehHHHHHHHHhhh---------hh-hhhe-eeccC--cccceEEEEccccch-hhcCchhhcccchhhhcCceeeecc
Confidence 999988744333222 33 4444 66666 699999999987754 33332 22 11 1111111 123
Q ss_pred CCEEEEeecCCe
Q psy6213 284 PQLFIASSRVSI 295 (330)
Q Consensus 284 ~~~l~s~~~dg~ 295 (330)
.+.|.+|+.||+
T Consensus 2428 ~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2428 CNRIFSCGADGT 2439 (2439)
T ss_pred CceEEEecCCCC
Confidence 556778888763
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-10 Score=105.00 Aligned_cols=282 Identities=14% Similarity=0.210 Sum_probs=177.8
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEE----EcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEE
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIF----LIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVV 77 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 77 (330)
.+.|.++.|-++...+... +|.|.+. +....... .+..++..|.+++||| |+..|+..+.++++.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E--------~VG~vd~GI~a~~WSP-D~Ella~vT~~~~l~ 145 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE--------IVGSVDSGILAASWSP-DEELLALVTGEGNLL 145 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE--------EEEEEcCcEEEEEECC-CcCEEEEEeCCCEEE
Confidence 4678899999988774333 9999888 44433322 2334455689999999 999999999998887
Q ss_pred EEECCC------------CCC--------CceeEEecc------------------------cccceeEEEEEecCCCEE
Q psy6213 78 VWNLGQ------------ISR--------SKQERVFND------------------------HKRTVNKVSFHYVESNWL 113 (330)
Q Consensus 78 iw~~~~------------~~~--------~~~~~~~~~------------------------~~~~i~~i~~~~~~~~~l 113 (330)
+....- .+. ++....|.+ ....-..|+|.. ||.++
T Consensus 146 ~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yF 224 (928)
T PF04762_consen 146 LMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYF 224 (928)
T ss_pred EEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEE
Confidence 754310 000 000011100 233456788996 99999
Q ss_pred EEEec---C---CcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec---CCcEEEEecCCCccceeee--cc
Q psy6213 114 ISGSQ---D---GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE---NGTIQQWDVRRPEKCFYQF--TA 182 (330)
Q Consensus 114 ~~~~~---d---~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---dg~i~i~d~~~~~~~~~~~--~~ 182 (330)
|+.+. . ..+++|+-+ |+...+-+.-.+--.+++|.|.|+ ++++... ...|.+|.-+--..-...+ ..
T Consensus 225 AVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~ 302 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDP 302 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCC
Confidence 98875 2 478999865 654444443334445789999998 5766654 2456666644211111222 23
Q ss_pred CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc-cccee--ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 183 HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS-LEYSI--NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 183 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
....|..+.|++++..|+....|. |.+|-..+..- +.... .....+..+.|+|....-+.... .+|.+..+++.
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t--~~g~~~~~~~~ 379 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT--SNGQYEIYDFA 379 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe--cCCcEEEEEEE
Confidence 456799999999999999987665 99998877631 11111 22334555889987655444444 24555554431
Q ss_pred ----CC---------------------------Cc--c--ceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 260 ----RP---------------------------YI--P--LASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 260 ----~~---------------------------~~--~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.. -. | ...+ .-..+|.+++|++++..+++-..||.|.+|..
T Consensus 380 ~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 380 WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 11 00 0 1111 12468999999999988999999999999973
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-10 Score=106.30 Aligned_cols=235 Identities=14% Similarity=0.177 Sum_probs=155.2
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecc--------------cccceeEEEEEecCCCEEEEE-ecC
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFND--------------HKRTVNKVSFHYVESNWLISG-SQD 119 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------------~~~~i~~i~~~~~~~~~l~~~-~~d 119 (330)
..+++++.++.++++-..++.|.++|... .....+.. .-.....+++.+ +++.|+++ ...
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G----~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG----NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTEN 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC----CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCC
Confidence 56888874566777777888999999764 22222221 012357889987 56655554 445
Q ss_pred CcEEEEEeecCceeeeeecC-----------------CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc
Q psy6213 120 GTMRLFDIRCQESTKIFHSN-----------------TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA 182 (330)
Q Consensus 120 ~~i~i~d~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~ 182 (330)
+.|+.+|+.++. +.++.+. -.....++++|++..++++...++.|++||..++.. ..+.+
T Consensus 646 ~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G 722 (1057)
T PLN02919 646 HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSG 722 (1057)
T ss_pred ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEec
Confidence 789999987654 3333210 113467999996665788888889999999876321 11111
Q ss_pred ---------------CCCCeEEEEEcCCCCE-EEEEecCCcEEEEeCCCCccccce------------ec---------c
Q psy6213 183 ---------------HSGPIFACDWHPEHAW-LATASRDKTIKVWDLSIKPSLEYS------------IN---------T 225 (330)
Q Consensus 183 ---------------~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~------------~~---------~ 225 (330)
.......++++|+++. +++-+.++.|++||+.++...... .. .
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~ 802 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL 802 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence 1124567999999884 455566789999998865321100 00 0
Q ss_pred ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec--------------CCCCeEEEEEecCCCEEEEee
Q psy6213 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE--------------HKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 226 ~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~s~~ 291 (330)
......++++++|.. +++.. .++.|++||..++.. ..+.+ .-....+++++++|+++++-+
T Consensus 803 l~~P~Gvavd~dG~L-YVADs--~N~rIrviD~~tg~v--~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt 877 (1057)
T PLN02919 803 LQHPLGVLCAKDGQI-YVADS--YNHKIKKLDPATKRV--TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT 877 (1057)
T ss_pred ccCCceeeEeCCCcE-EEEEC--CCCEEEEEECCCCeE--EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC
Confidence 123568999999984 55555 599999999987643 22221 112578899999999999999
Q ss_pred cCCeEeeeecc
Q psy6213 292 RVSIIPRAKNI 302 (330)
Q Consensus 292 ~dg~i~iw~~~ 302 (330)
.++.|++|+..
T Consensus 878 ~Nn~Irvid~~ 888 (1057)
T PLN02919 878 NNSLIRYLDLN 888 (1057)
T ss_pred CCCEEEEEECC
Confidence 99999999864
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-11 Score=101.99 Aligned_cols=287 Identities=15% Similarity=0.169 Sum_probs=190.6
Q ss_pred CcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeece-------e-eccccccccceeeeeecccCCcEEEEEcC
Q psy6213 3 YLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNL-------R-VGKNINLNFSCNDVAWSCIEENHIATGAT 72 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~-------~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 72 (330)
......|++|+....++++| ||.+++..+.+...-..... . .....++..+|.-+.|+. ..+.|-+...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCC
Confidence 45678999999999997776 99999998876321111110 0 022334566789999998 8889999999
Q ss_pred CCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCC
Q psy6213 73 NGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHS 152 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 152 (330)
+|.|.+|-+-.+. .-....-...++.|.+++|+. +|..++....||.|.+=.++.. .+.--.........+.|++|.
T Consensus 92 ~GlIiVWmlykgs-W~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGN-RIwgKeLkg~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGS-WCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGN-RIWGKELKGQLLAHVLWSEDL 168 (1189)
T ss_pred CceEEEEeeeccc-HHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccc-eecchhcchheccceeecccH
Confidence 9999999987621 112222234567899999996 9999999999999988776633 222111112234578999999
Q ss_pred CcEEEEEecCCcEEEEecCCCccce------e----eeccCCCCeEEEEEc--------CCCCEEEEEecCCcEEEEeCC
Q psy6213 153 PYAFASVSENGTIQQWDVRRPEKCF------Y----QFTAHSGPIFACDWH--------PEHAWLATASRDKTIKVWDLS 214 (330)
Q Consensus 153 ~~~~~~~~~dg~i~i~d~~~~~~~~------~----~~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i~i~d~~ 214 (330)
+ +++.+-.+|.+.+||.+.+.... . .+......|..+.|. |+...|+++-.+|.+.+..-.
T Consensus 169 ~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e 247 (1189)
T KOG2041|consen 169 E-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE 247 (1189)
T ss_pred H-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence 8 57777888999999987432110 0 011112235556664 367789999999999987665
Q ss_pred CCccccceeccccceEEEEEcCCCCeEEEEeecc------cCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEE
Q psy6213 215 IKPSLEYSINTIASVSRIKWRPQRKFHLASCSLV------VDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFI 288 (330)
Q Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 288 (330)
+.+.+. .....-.+..+.|+++|..|.+.+... ..+.|.+|..- ++. +.+++.....|++++|-..|-.+|
T Consensus 248 ND~~Pv-v~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i-~gtlkvpg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 248 NDPEPV-VVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHI-VGTLKVPGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred CCCCCe-EEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhh-eEEEecCCceeeeeEEcCCceEEE
Confidence 553332 233347789999999999744444310 11355555543 222 677777788999999977776666
Q ss_pred EeecCCeEee
Q psy6213 289 ASSRVSIIPR 298 (330)
Q Consensus 289 s~~~dg~i~i 298 (330)
-+ .|+.|++
T Consensus 325 ~A-vdsfiyf 333 (1189)
T KOG2041|consen 325 IA-VDSFIYF 333 (1189)
T ss_pred EE-ecceEEE
Confidence 54 4666665
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-12 Score=107.95 Aligned_cols=239 Identities=15% Similarity=0.200 Sum_probs=172.2
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCC------------CceeEEecccccceeEEEEEecCCCEEEEEecCCc
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISR------------SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGT 121 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~ 121 (330)
..+++|+. +..++|+|+.||.+++..+.+... ...-+++.+|+..|.-+.|+. ..+.|-+...+|-
T Consensus 17 L~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 17 LHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDTSGL 94 (1189)
T ss_pred EEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCCCce
Confidence 48999998 999999999999999998865221 122356789999999999996 7888999999999
Q ss_pred EEEEEeecCceeeeeec--CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEE
Q psy6213 122 MRLFDIRCQESTKIFHS--NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWL 199 (330)
Q Consensus 122 i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 199 (330)
|.+|-+-.+.-...+.. ..+-|.+++|..+|. .+.....||.|.+=.+..+.---+.++ ......+.|++|.+.+
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQA 171 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHHH
Confidence 99999987765544432 456789999999998 488888899887776654211111222 2234578899999998
Q ss_pred EEEecCCcEEEEeCCCCccccc-----------eeccccceEEEEEc--------CCCCeEEEEeecccCCeEEEEEccC
Q psy6213 200 ATASRDKTIKVWDLSIKPSLEY-----------SINTIASVSRIKWR--------PQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 200 ~~~~~dg~i~i~d~~~~~~~~~-----------~~~~~~~v~~~~~~--------~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
+.+-..|.+.+||....-.... .......+..+.|. |+.+. ++.+- .+|.+.|..-.+
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~-lavcy--~nGr~QiMR~eN 248 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR-LAVCY--ANGRMQIMRSEN 248 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE-EEEEE--cCceehhhhhcC
Confidence 8888999999999765411100 00112234555553 57776 55555 599999987777
Q ss_pred CCccceEeecCCCCeEEEEEecCCCEEEEeecC---------CeEeeeecc
Q psy6213 261 PYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV---------SIIPRAKNI 302 (330)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---------g~i~iw~~~ 302 (330)
...|+..-.+ -.+.+..|+++|.+||.++.| +.|.++.+.
T Consensus 249 D~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 249 DPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY 297 (1189)
T ss_pred CCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence 6665544333 678999999999999999875 356666544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.5e-10 Score=90.84 Aligned_cols=243 Identities=13% Similarity=0.123 Sum_probs=146.6
Q ss_pred EeeCCCee--e-c-------C--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc-C-CCcEE
Q psy6213 12 LKADNGLA--Q-P-------S--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA-T-NGAVV 77 (330)
Q Consensus 12 ~s~~~~~~--~-~-------g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~-dg~i~ 77 (330)
+||||+.+ + + | +..|.+||..+.+....+................++++| ++++|++.. . +..|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 89999982 2 2 1 589999999999988777765432211222236789999 999888776 3 68899
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee-----eeeecCCCCeE-EEEEcC-
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST-----KIFHSNTESVR-DVEFNP- 150 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~v~-~~~~~~- 150 (330)
+.|+.+ .+.+..+.-- +...-...+ +.. +.+-+.||......+.+.... ..+.....++. .-.|.+
T Consensus 132 VvD~~~---~kvv~ei~vp-~~~~vy~t~--e~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~ 204 (352)
T TIGR02658 132 VVDLEG---KAFVRMMDVP-DCYHIFPTA--NDT-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNK 204 (352)
T ss_pred EEECCC---CcEEEEEeCC-CCcEEEEec--CCc-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcC
Confidence 999998 5666655431 111111221 122 222334555544433221111 11111001110 004455
Q ss_pred CCCcEEEEEecCCcEEEEecCCCc----cceeeecc-------CCCCeEEEEEcCCCCEEEEEe----------cCCcEE
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPE----KCFYQFTA-------HSGPIFACDWHPEHAWLATAS----------RDKTIK 209 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~----~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~----------~dg~i~ 209 (330)
++.+ +....+ |.|++.|+.... .....+.. ..+.+.-++++|+++.+++.. ..+.|.
T Consensus 205 dg~~-~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 205 SGRL-VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CCcE-EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 7764 444444 999999965421 12222111 233445599999999888743 124799
Q ss_pred EEeCCCCccccceeccccceEEEEEcCCCC-eEEEEeecccCCeEEEEEccCCCccceEe
Q psy6213 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRK-FHLASCSLVVDSSVNVWDIRRPYIPLASF 268 (330)
Q Consensus 210 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~i~i~d~~~~~~~~~~~ 268 (330)
++|..+.+. .........+..++++||++ .++++.. .++.|.++|..+.+. +..+
T Consensus 283 ViD~~t~kv-i~~i~vG~~~~~iavS~Dgkp~lyvtn~--~s~~VsViD~~t~k~-i~~i 338 (352)
T TIGR02658 283 VVDAKTGKR-LRKIELGHEIDSINVSQDAKPLLYALST--GDKTLYIFDAETGKE-LSSV 338 (352)
T ss_pred EEECCCCeE-EEEEeCCCceeeEEECCCCCeEEEEeCC--CCCcEEEEECcCCeE-Eeee
Confidence 999988844 44444567899999999999 6666665 588999999998876 5544
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-10 Score=95.07 Aligned_cols=185 Identities=10% Similarity=0.053 Sum_probs=120.4
Q ss_pred ceeEEEEEecCCC-EEEEEec---CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC--cEEEEecCC
Q psy6213 99 TVNKVSFHYVESN-WLISGSQ---DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG--TIQQWDVRR 172 (330)
Q Consensus 99 ~i~~i~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~ 172 (330)
....-.|+| +++ .++..+. +..|+++|+.+++...... ..+......|+|+|+.++++.+.++ .|+++|+..
T Consensus 189 ~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 778899999 666 3554433 3569999998887655443 4555667889999997776665554 577778765
Q ss_pred CccceeeeccCCCCeEEEEEcCCCCEEEEEec-CC--cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeeccc
Q psy6213 173 PEKCFYQFTAHSGPIFACDWHPEHAWLATASR-DK--TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVV 249 (330)
Q Consensus 173 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 249 (330)
+ . ...+..+........|+|||+.|+..+. .+ .|.++|+.+++....... .. ....|+|+|++++.+.....
T Consensus 267 g-~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 267 K-T-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred C-c-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCC
Confidence 3 2 3444444443446689999987776663 23 588888877644222221 11 12489999999877765210
Q ss_pred -----C-CeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC
Q psy6213 250 -----D-SSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 250 -----~-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
. ..|.+.|+.++.. ..+... .......|+|||+.|+..+.+
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~--~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYI--RRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred cccCCCCcEEEEEECCCCCe--EECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 1 4788889887753 334332 233458899999988777654
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=119.49 Aligned_cols=188 Identities=14% Similarity=0.250 Sum_probs=149.3
Q ss_pred cccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
-..|.++.=+|...+ ++++ ||.+++|....++.+..+..... ..|+.+.|+. .|+.+..+..||.+.+|..
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~------s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN------SRVTRSRFNH-QGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc------chhhhhhhcc-cCCceeeeccCCceeeccc
Confidence 356788888898888 7777 99999999988876655543322 2368899998 9999999999999999998
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEe---cCCcEEEEEeecCc-eeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGS---QDGTMRLFDIRCQE-STKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~---~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
. .++....+.|......+.|-. ..+++++ .++.+.+||..-.. .-..-..|.+.++++++.|..+ +|+
T Consensus 2281 ~----pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-lli 2352 (2439)
T KOG1064|consen 2281 S----PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLI 2352 (2439)
T ss_pred C----CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEE
Confidence 7 467777889999999999973 6677765 46899999965221 1111267899999999999998 899
Q ss_pred EEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCc
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKP 217 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 217 (330)
+|+.+|.|++||++. .+..+.++. ++ ...+|++|+..|.++||++....
T Consensus 2353 sggr~G~v~l~D~rq-rql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQ-RQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred ecCCcCcEEEeehHH-HHHHHHhhh---------hh-hhheeeccCcccceEEEEccccc
Confidence 999999999999997 555555553 44 56789999999999999998773
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-12 Score=95.38 Aligned_cols=202 Identities=12% Similarity=0.159 Sum_probs=133.5
Q ss_pred eeEEEEEecCCCEEEEEecCCcEEEEEeecCcee------------eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEE
Q psy6213 100 VNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST------------KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQ 167 (330)
Q Consensus 100 i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i 167 (330)
+..+.+. ....|+++..++.+..+....+.+. +.+..+.++-.+-+.+-.+. -++++..||.+.+
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t-~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDN-RVCIGYADGSLAV 115 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCC-ceEecCCCceEEE
Confidence 5566665 4667777777777666654333222 22222222222222222233 3889999999999
Q ss_pred EecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe-----cCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEE
Q psy6213 168 WDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS-----RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHL 242 (330)
Q Consensus 168 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 242 (330)
++.+........+......-.+.++...++.+.++. .-+..+.|+++..+...........|++++-+|..+.++
T Consensus 116 ~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v 195 (319)
T KOG4714|consen 116 FSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV 195 (319)
T ss_pred EechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEE
Confidence 998763222222222112222333334455554443 234567777776654444444455699999999999989
Q ss_pred EEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec-CCCEEEEeecCCeEeeeeccceee
Q psy6213 243 ASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG-DPQLFIASSRVSIIPRAKNIKIFI 306 (330)
Q Consensus 243 ~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~ 306 (330)
+.++ .||.+-+||.++...|...+..|+.+++.+-|+| ++..|+++++||.+-.|+....+.
T Consensus 196 ~cgt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l 258 (319)
T KOG4714|consen 196 CCGT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFL 258 (319)
T ss_pred EEec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceE
Confidence 9888 8999999999999888889999999999999999 888999999999999998764443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-09 Score=80.93 Aligned_cols=230 Identities=15% Similarity=0.188 Sum_probs=134.1
Q ss_pred EEEEeeCCCeeecC-CCeEEEEEcCCc--ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC
Q psy6213 9 KHGLKADNGLAQPS-RNVFKIFLIKDT--EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS 85 (330)
Q Consensus 9 ~~~~s~~~~~~~~g-d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 85 (330)
.++.+++|++++.- |..|.|=...++ ......+.+......- ..++||| ++.+||.+...|+|+++|+..
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQW----Rkl~WSp-D~tlLa~a~S~G~i~vfdl~g-- 74 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQW----RKLAWSP-DCTLLAYAESTGTIRVFDLMG-- 74 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchh----eEEEECC-CCcEEEEEcCCCeEEEEeccc--
Confidence 36788999998888 999999877653 2333333333322222 7899999 999999999999999999875
Q ss_pred CCceeEEec-------ccccceeEEEEEecC-----CCEEEEEecCCcEEEEEeecC-----ceeeeeec---CCCCeEE
Q psy6213 86 RSKQERVFN-------DHKRTVNKVSFHYVE-----SNWLISGSQDGTMRLFDIRCQ-----ESTKIFHS---NTESVRD 145 (330)
Q Consensus 86 ~~~~~~~~~-------~~~~~i~~i~~~~~~-----~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~---~~~~v~~ 145 (330)
..+..+. .-...|..+.|.+-. ...|++-..+|.++-|-+..+ +....+.. ....|.+
T Consensus 75 --~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~ 152 (282)
T PF15492_consen 75 --SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINS 152 (282)
T ss_pred --ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeE
Confidence 1111221 123567777776422 235777777888888876432 22233322 3568999
Q ss_pred EEEcCCCCcEEEEEec-CCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCE--EEEEecCCc------EEEEeCCCC
Q psy6213 146 VEFNPHSPYAFASVSE-NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAW--LATASRDKT------IKVWDLSIK 216 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~dg~------i~i~d~~~~ 216 (330)
+.++|..+ +|++|+. ...-... ++....+++-..-.+..+ .++...|+. ..+|.+-+.
T Consensus 153 ~vy~p~h~-LLlVgG~~~~~~~~s------------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~ 219 (282)
T PF15492_consen 153 AVYHPKHR-LLLVGGCEQNQDGMS------------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF 219 (282)
T ss_pred EEEcCCCC-EEEEeccCCCCCccc------------cccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce
Confidence 99999988 5555543 3210000 011112222211111111 111111111 123332222
Q ss_pred ccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 217 PSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
+...........|..|..||||+. +++.. .+|.|.+|++.+-+.
T Consensus 220 ~~fs~~~~~~d~i~kmSlSPdg~~-La~ih--~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 220 KFFSRQGQEQDGIFKMSLSPDGSL-LACIH--FSGSLSLWEIPSLRL 263 (282)
T ss_pred eeeeccccCCCceEEEEECCCCCE-EEEEE--cCCeEEEEecCcchh
Confidence 111122334678999999999997 55555 599999999987654
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-11 Score=90.16 Aligned_cols=150 Identities=17% Similarity=0.251 Sum_probs=105.3
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec-----CCcEEEEEeecCceeeeee
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ-----DGTMRLFDIRCQESTKIFH 137 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~ 137 (330)
.++.++++..||.+.+++.+.. .+...........-.+.++.. .++.+.+++. -+..+.|+++..+....-+
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cCCceEecCCCceEEEEechHH--Hhhhhhcccccccccccceee-cccEEecCCcceEeeccceeeecccccccccccc
Confidence 5788999999999999998651 111111111111122223332 3444444331 2356667665443332222
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCCC
Q psy6213 138 SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLSI 215 (330)
Q Consensus 138 ~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~ 215 (330)
.....|.+++-+|..++++++|+.||.+-+||.++...+...++.|+.+|..+-|+| ++..|++++.||.+..||..+
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 233459999999999989999999999999999987777778899999999999999 677899999999999999876
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5e-09 Score=96.60 Aligned_cols=286 Identities=11% Similarity=0.148 Sum_probs=175.1
Q ss_pred cceEEEEeeCCCe--eecC-C---CeEEEEEcCCcc-eeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 6 PVHKHGLKADNGL--AQPS-R---NVFKIFLIKDTE-FVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 6 ~v~~~~~s~~~~~--~~~g-d---~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
.+...+|.+.... ++.+ . ..+.+-...... ..............-...|.++.|-+ +...++.+..+|.|.+
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLA-DSESLCIALASGDIIL 101 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEecc-CCCcEEEEECCceEEE
Confidence 4666777776554 4555 2 234444433322 11111111110111223478899998 8888888999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee---------------c--------Cceeee
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR---------------C--------QESTKI 135 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~---------------~--------~~~~~~ 135 (330)
...+.............-...|.+++||| |+.+++..+.++++.+.+-. . |+....
T Consensus 102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ 180 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSVDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQ 180 (928)
T ss_pred EEccCCCCCceeEEEEEEcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCc
Confidence 93222111234444445678999999999 89999999989988887421 0 000011
Q ss_pred eec------------------------CCCCeEEEEEcCCCCcEEEEEec---C---CcEEEEecCCCccceeeeccCCC
Q psy6213 136 FHS------------------------NTESVRDVEFNPHSPYAFASVSE---N---GTIQQWDVRRPEKCFYQFTAHSG 185 (330)
Q Consensus 136 ~~~------------------------~~~~v~~~~~~~~~~~~~~~~~~---d---g~i~i~d~~~~~~~~~~~~~~~~ 185 (330)
|++ ....-..++|-.||++ |++.+- . ..+++|+-+ +....+.+.-.+
T Consensus 181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~y-FAVss~~~~~~~~R~iRVy~Re--G~L~stSE~v~g 257 (928)
T PF04762_consen 181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEY-FAVSSVEPETGSRRVIRVYSRE--GELQSTSEPVDG 257 (928)
T ss_pred cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcE-EEEEEEEcCCCceeEEEEECCC--ceEEeccccCCC
Confidence 110 1223457889999995 666553 2 469999966 333333333344
Q ss_pred CeEEEEEcCCCCEEEEEec---CCcEEEEeCCCCcccccee---ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 186 PIFACDWHPEHAWLATASR---DKTIKVWDLSIKPSLEYSI---NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 186 ~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
--.+++|.|.|+++|+... ...|.+|.-+..+.-.+.. .....+..+.|++|+.. +|..- ...|++|-..
T Consensus 258 Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~i-LAv~~---~~~vqLWt~~ 333 (928)
T PF04762_consen 258 LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEI-LAVWL---EDRVQLWTRS 333 (928)
T ss_pred ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCE-EEEEe---cCCceEEEee
Confidence 4457899999999998875 3557888765543322222 34678999999999996 54443 4459999988
Q ss_pred CCCcc-ceEeec-CCCCeEEEEEec-CCCEEEEeecCCeEeeee
Q psy6213 260 RPYIP-LASFTE-HKDVVSGLAWRG-DPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 260 ~~~~~-~~~~~~-~~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~ 300 (330)
+..-. .+.+.. ....+..+.|+| +...|...+.+|.+..++
T Consensus 334 NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 334 NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 76532 222222 223455699999 556677777767776643
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.5e-11 Score=90.57 Aligned_cols=248 Identities=17% Similarity=0.284 Sum_probs=160.6
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcc-----eeeeeceee-----ccccccccceeeeeeccc-CCcEEEEE
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTE-----FVETHNLRV-----GKNINLNFSCNDVAWSCI-EENHIATG 70 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~-----~~~~~~~~~-----~~~~~~~~~v~~~~~~~~-~~~~l~~~ 70 (330)
.+.|+++.|...|.|+++| .|.|.+|.-+... +...++.+. -+...+...|..+.|..+ ....++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999 6999999766532 111122221 122334455788998652 33467777
Q ss_pred cCCCcEEEEECCCCC-----------------CC----------------------ceeEEe-cccccceeEEEEEecCC
Q psy6213 71 ATNGAVVVWNLGQIS-----------------RS----------------------KQERVF-NDHKRTVNKVSFHYVES 110 (330)
Q Consensus 71 ~~dg~i~iw~~~~~~-----------------~~----------------------~~~~~~-~~~~~~i~~i~~~~~~~ 110 (330)
+.|.+|++|.+.... .+ .+.+.+ ..|.--|+++.++. +.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~ 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DK 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-ch
Confidence 889999999885420 00 000111 34666788999985 66
Q ss_pred CEEEEEecCCcEEEEEeecCce---eeeeecCC-----CCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee---e
Q psy6213 111 NWLISGSQDGTMRLFDIRCQES---TKIFHSNT-----ESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY---Q 179 (330)
Q Consensus 111 ~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~---~ 179 (330)
..++++. |-.|.+|++.-... +..++.|. .-|++..|+|....++.-.+..|.|++-|++....+.. .
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 6676655 77899999864332 22233332 35788999999888888899999999999995321111 0
Q ss_pred ------------eccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec-c------------cc---ceEE
Q psy6213 180 ------------FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN-T------------IA---SVSR 231 (330)
Q Consensus 180 ------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~------------~~---~v~~ 231 (330)
+.+-...|..+.|+++|+++++-.. -++++||.+..+......+ | .. .-..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe 342 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE 342 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence 1122356889999999999988766 5899999987755444332 1 11 1235
Q ss_pred EEEcCCCCeEEEEeecccCCeEEEEE
Q psy6213 232 IKWRPQRKFHLASCSLVVDSSVNVWD 257 (330)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~i~i~d 257 (330)
+.|+.|.+. +.+++ ..+..-+|-
T Consensus 343 isfSgd~~~-v~sgs--y~NNfgiyp 365 (460)
T COG5170 343 ISFSGDDKH-VLSGS--YSNNFGIYP 365 (460)
T ss_pred EEecCCccc-ccccc--cccceeeec
Confidence 778888776 44444 355555554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.9e-10 Score=93.97 Aligned_cols=196 Identities=9% Similarity=0.024 Sum_probs=119.8
Q ss_pred eeeeeecccCCcE-EEEEcCC---CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEE-EEecC--CcEEEEE
Q psy6213 54 CNDVAWSCIEENH-IATGATN---GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI-SGSQD--GTMRLFD 126 (330)
Q Consensus 54 v~~~~~~~~~~~~-l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~-~~~~d--~~i~i~d 126 (330)
.....|+| +++. ++..+.+ ..|.++|+.+ ++... +....+......|+| +++.++ +.+.+ ..|.++|
T Consensus 190 ~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~t---g~~~~-lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 190 NIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYT---GKKEK-IASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred eEeEEECC-CCCcEEEEEEccCCCCEEEEEECCC---CcEEE-EecCCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEE
Confidence 36789999 7774 6544433 4588888876 33322 223445566778999 665554 44434 4688888
Q ss_pred eecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC--cEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec
Q psy6213 127 IRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG--TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 127 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
+.+++.. .+..+........|+|+|+.++++....+ .|++.|+..+........+. ....|+|+|+.++....
T Consensus 264 l~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 264 TNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVYSSR 338 (419)
T ss_pred CCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEEEEc
Confidence 8777643 34333333445689999997666665555 47777887633212222211 12489999998887765
Q ss_pred C---------CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 205 D---------KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 205 d---------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
. ..|.+.|+.++...... . ........|+|||+.++.+........+.+.++....
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT-~-~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRRLT-A-NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEECC-C-CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 4 26888888777432221 1 1233458899999987777652223346677776543
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-10 Score=88.30 Aligned_cols=237 Identities=16% Similarity=0.195 Sum_probs=167.2
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeE-EecccccceeEEEEEecCCCEEEEEecCCcEEEEEe----e
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQER-VFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDI----R 128 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~----~ 128 (330)
+++...-| ...-+++.+.|.++++|--.+. ++... .......+++++.+.+ +...|++|-..|++.-+.+ +
T Consensus 27 vn~~~l~~-~e~gv~~~s~drtvrv~lkrds--~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfn 102 (404)
T KOG1409|consen 27 VNAAILIP-KEEGVISVSEDRTVRVWLKRDS--GQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFN 102 (404)
T ss_pred hhhheecc-CCCCeEEccccceeeeEEeccc--cccCchhhhhCCCCceEeeeec-cceEEEEEEecceEEEEEhhhhhh
Confidence 35555666 6778889999999999975542 22222 2223467899999997 8888999999999988865 3
Q ss_pred cCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcE
Q psy6213 129 CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTI 208 (330)
Q Consensus 129 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 208 (330)
....++.+..|...+..+-|+...+ .+++.+.|..+.---.+. +..+.... .....+++.+.-. +...|...|.+
T Consensus 103 km~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~-~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~~gqv 177 (404)
T KOG1409|consen 103 KMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTES-GNRLGGYN-FETPASALQFDAL--YAFVGDHSGQI 177 (404)
T ss_pred hcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeecc-CCcccceE-eeccCCCCceeeE--EEEecccccce
Confidence 4445666677899999999998877 477778777665443333 22111110 0011112222111 55566666776
Q ss_pred EEEeCCCC--ccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCE
Q psy6213 209 KVWDLSIK--PSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQL 286 (330)
Q Consensus 209 ~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 286 (330)
.+-.+... .......++...+.+++|.|.... +.++. .|..+.+||+-..+.....+.+|...|..+...+--+.
T Consensus 178 t~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~-LfSg~--~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 178 TMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRL-LFSGA--SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ 254 (404)
T ss_pred EEEEEeecCCceEEEEcCcccceEEEEEcCCCcE-EEecc--ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence 66555433 345666778999999999999886 55555 59999999998777667889999999999999888899
Q ss_pred EEEeecCCeEeeeecc
Q psy6213 287 FIASSRVSIIPRAKNI 302 (330)
Q Consensus 287 l~s~~~dg~i~iw~~~ 302 (330)
+.+++.||.|.+|+..
T Consensus 255 l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMN 270 (404)
T ss_pred eeeccCCCeEEEEecc
Confidence 9999999999999743
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-09 Score=86.03 Aligned_cols=261 Identities=15% Similarity=0.180 Sum_probs=166.8
Q ss_pred EEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc-CCcEEEE-----EcCCCcEEEEEC
Q psy6213 9 KHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI-EENHIAT-----GATNGAVVVWNL 81 (330)
Q Consensus 9 ~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~iw~~ 81 (330)
-+.|+-+.+|++-- ...++|+++ ++.+. ....+.-. ...+....|+|. ++..||. ....+.+++|.+
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~-~~p~~~lr----~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI 209 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEI-TDNIE-EHPFKNLR----PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI 209 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEec-CCccc-cCchhhcc----ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc
Confidence 46788888885555 778889987 43332 11111111 133688899993 3344443 355678999998
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEe-----------cCCcEEEEEeecCceeeeeecCCCCeEEEEEcC
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGS-----------QDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-----------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 150 (330)
.. ...+.+-.-.+..=..+.|.+ .++++++-- ....+++++++.... .....-.++|...+|.|
T Consensus 210 p~---~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p 284 (561)
T COG5354 210 PK---NSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEP 284 (561)
T ss_pred cC---CCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecc
Confidence 75 444443333334445688887 566554321 135688888874433 33324578999999999
Q ss_pred CCCcEE-EEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC---CcEEEEeCCCCccccceeccc
Q psy6213 151 HSPYAF-ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD---KTIKVWDLSIKPSLEYSINTI 226 (330)
Q Consensus 151 ~~~~~~-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~ 226 (330)
.++.+. ++|-.+-.+.++|++.+ ....+ ....=+.+.|+|.+++++.++-| |.+.+||....-.... .-..
T Consensus 285 ~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~-~~~~ 359 (561)
T COG5354 285 LSSRFAVISGYMPASVSVFDLRGN--LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAG-AFNG 359 (561)
T ss_pred cCCceeEEecccccceeecccccc--eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEE-Eeec
Confidence 987533 33457888999999863 33333 34455678899999999998755 6799999876633221 1123
Q ss_pred cceEEEEEcCCCCeEEEEeec---ccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 227 ASVSRIKWRPQRKFHLASCSL---VVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~---~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
...+-+.|+|+++++...... ..|..+.|||+..... . ..+.+.|.|.+++..+.+.+.
T Consensus 360 ~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~--f-------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 360 LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV--F-------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh--h-------hhhhccccCCcccceeeccCC
Confidence 345567899999987665541 2478999999976542 1 456677877777776666654
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-10 Score=90.33 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=111.2
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCC-CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEe---ecC
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISR-SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDI---RCQ 130 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~---~~~ 130 (330)
..+..+| ++.++|++..+....++++....+ .+..... .-...-+.+.+.. +......+..-|.++-+|+ ..+
T Consensus 66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeee-ccceEEEEeecCCceeeeeeccccc
Confidence 4556677 899999998888887888766433 2222222 2233445555554 4444554444444444444 334
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
.+ ..+-+|-..++.++|+||++ .++++..|..|++-........-.-.-+|+.-|..++.-++ ..|++++.|+++++
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 33 33446889999999999998 69999999999998877633333344579999999999865 45899999999999
Q ss_pred EeCCCCccc
Q psy6213 211 WDLSIKPSL 219 (330)
Q Consensus 211 ~d~~~~~~~ 219 (330)
||+.+++.+
T Consensus 220 Wd~~sgk~L 228 (390)
T KOG3914|consen 220 WDITSGKLL 228 (390)
T ss_pred EecccCCcc
Confidence 999999764
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-08 Score=78.00 Aligned_cols=220 Identities=14% Similarity=0.096 Sum_probs=139.7
Q ss_pred EEEEee-CCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC
Q psy6213 9 KHGLKA-DNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS 85 (330)
Q Consensus 9 ~~~~s~-~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 85 (330)
+..|.+ ++.++.+. .+.|..|+..++.... +.... ...+++...+ ..|+.+...+ +.++|..+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~---------~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~ 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG---------PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGK 71 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS---------EEEEEEECTT-SEEEEEETTC-EEEEETTTTE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC---------CceEEEEccC-CEEEEEEcCc-eEEEecCCCc
Confidence 567887 67775555 9999999998876432 11111 2677777315 5555555544 5666887621
Q ss_pred CCceeEEec--c-cccceeEEEEEecCCCEEEEEecC--------CcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCc
Q psy6213 86 RSKQERVFN--D-HKRTVNKVSFHYVESNWLISGSQD--------GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPY 154 (330)
Q Consensus 86 ~~~~~~~~~--~-~~~~i~~i~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 154 (330)
.+.+.... . .....+.+++.| ++++.++.... |.|..++.. ++...... .-...+.++|+|+++.
T Consensus 72 -~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 72 -VTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKT 147 (246)
T ss_dssp -EEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSE
T ss_pred -EEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchh
Confidence 22222221 1 346688999998 78877766543 456666665 44333333 3456789999999997
Q ss_pred EEEEEecCCcEEEEecCCCcc------ceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccc
Q psy6213 155 AFASVSENGTIQQWDVRRPEK------CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIAS 228 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 228 (330)
++++-+..+.|..+++..... ....+....+..-.+++..+|++.++....+.|.++|.+ ++......-....
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~ 226 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPR 226 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSS
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCC
Confidence 667778889999999875332 111222222347889999999988888888999999988 5343333333468
Q ss_pred eEEEEE-cCCCCeEEEEe
Q psy6213 229 VSRIKW-RPQRKFHLASC 245 (330)
Q Consensus 229 v~~~~~-~~~~~~l~~~~ 245 (330)
+++++| -++.+.|+++.
T Consensus 227 ~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 227 PTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEESTTSSEEEEEE
T ss_pred EEEEEEECCCCCEEEEEe
Confidence 999999 47777777665
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-08 Score=76.82 Aligned_cols=220 Identities=13% Similarity=0.112 Sum_probs=139.7
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK 134 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 134 (330)
.++.|.+.++.++++-...+.|..|+..+ ... ..+.... ...+++...+ ..++.+... .+.++|..+++...
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~---~~~-~~~~~~~--~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDT---GEV-EVIDLPG--PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTT---TEE-EEEESSS--EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCC---CeE-EEEecCC--CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEE
Confidence 35788875677777777789999999876 332 2222222 6777777324 555555554 45666988876544
Q ss_pred eeec-----CCCCeEEEEEcCCCCcEEEEEecC--------CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEE-
Q psy6213 135 IFHS-----NTESVRDVEFNPHSPYAFASVSEN--------GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLA- 200 (330)
Q Consensus 135 ~~~~-----~~~~v~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~- 200 (330)
.... .....+.+++.|+|. +.++.... |.|..++.. .+ .......-...+.++|+|+++.|+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchheee
Confidence 4332 335678999999998 56665433 457777766 22 222333345678999999998765
Q ss_pred EEecCCcEEEEeCCCCcc-c---ccee--cc-ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCC
Q psy6213 201 TASRDKTIKVWDLSIKPS-L---EYSI--NT-IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKD 273 (330)
Q Consensus 201 ~~~~dg~i~i~d~~~~~~-~---~~~~--~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 273 (330)
+-+..+.|..|++..... + .... .. ......+++..+|+..+ +.. ..+.|.+++.+ ++. +..+.....
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v-a~~--~~~~I~~~~p~-G~~-~~~i~~p~~ 225 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV-ADW--GGGRIVVFDPD-GKL-LREIELPVP 225 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE-EEE--TTTEEEEEETT-SCE-EEEEE-SSS
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE-EEc--CCCEEEEECCC-ccE-EEEEcCCCC
Confidence 566778899999864322 1 1111 11 23488899999998544 443 49999999988 554 555555556
Q ss_pred CeEEEEEe-cCCCEEEEee
Q psy6213 274 VVSGLAWR-GDPQLFIASS 291 (330)
Q Consensus 274 ~v~~~~~~-~~~~~l~s~~ 291 (330)
.+++++|. ++.+.|+..+
T Consensus 226 ~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEe
Confidence 89999995 5655555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-09 Score=80.98 Aligned_cols=226 Identities=11% Similarity=0.075 Sum_probs=142.6
Q ss_pred eecC-CCeEEEEEcCCccee-eeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEeccc
Q psy6213 19 AQPS-RNVFKIFLIKDTEFV-ETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDH 96 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 96 (330)
++.| .|.+.+|...+.+.. .....+...+.- +...+- ..-.+..++.|.++++.+++......... . .
T Consensus 88 a~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~----~~r~cd---~~~~~~i~sndht~k~~~~~~~s~~~~~h-~--~ 157 (344)
T KOG4532|consen 88 ADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL----VKRYCD---LKFPLNIASNDHTGKTMVVSGDSNKFAVH-N--Q 157 (344)
T ss_pred EeccccceeeeecccCcccceeeecccccchhh----hhhhcc---cccceeeccCCcceeEEEEecCcccceee-c--c
Confidence 4445 999999999865432 222222211100 011111 33456677889999998887632222211 1 1
Q ss_pred ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce--ee-eeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCC
Q psy6213 97 KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES--TK-IFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 173 (330)
.-.+.++++++ +++++++.+....|..|.+..... +. ......+.-.+..|+.... .+|++..||++.|||++..
T Consensus 158 ~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 158 NLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred ccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEeccc
Confidence 13388999998 999999999999999998865322 22 2223344556788988887 6999999999999999975
Q ss_pred cccee----eeccCCCCeEEEEEcCCCC--EEEEEecCCcEEEEeCCCCccccceecc--------ccceEEEEEcCCCC
Q psy6213 174 EKCFY----QFTAHSGPIFACDWHPEHA--WLATASRDKTIKVWDLSIKPSLEYSINT--------IASVSRIKWRPQRK 239 (330)
Q Consensus 174 ~~~~~----~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~v~~~~~~~~~~ 239 (330)
..+.. +-..|.+.+..+.|++-|. +|+..-.-+.+.+.|+++.......... ...+....|+.++.
T Consensus 236 ~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 236 ATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred ccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 54433 2345889999999998653 4555556678999999988553332221 22366666666666
Q ss_pred eEEEEeecccCCeEEEEEccC
Q psy6213 240 FHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~ 260 (330)
...+. + +-.+.-|++.+
T Consensus 316 s~~v~-~---e~~~ae~ni~s 332 (344)
T KOG4532|consen 316 SNDVK-N---ELQGAEYNILS 332 (344)
T ss_pred ccccc-c---chhhheeeccc
Confidence 53332 2 34444555543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-08 Score=86.32 Aligned_cols=249 Identities=8% Similarity=0.039 Sum_probs=143.6
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccc
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHK 97 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 97 (330)
++++ ++.+..+|.++|+..-....... .. ..... .++.++.++.+|.+..||.++ ++.+-......
T Consensus 109 ~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~------~~p~v---~~~~v~v~~~~g~l~a~d~~t---G~~~W~~~~~~ 175 (377)
T TIGR03300 109 FVGTEKGEVIALDAEDGKELWRAKLSSE-VL------SPPLV---ANGLVVVRTNDGRLTALDAAT---GERLWTYSRVT 175 (377)
T ss_pred EEEcCCCEEEEEECCCCcEeeeeccCce-ee------cCCEE---ECCEEEEECCCCeEEEEEcCC---CceeeEEccCC
Confidence 4444 77888888777776544332211 00 01111 245677778899999999987 44443333221
Q ss_pred cce-----eEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCC----C------e-EEEEEcCCCCcEEEEEec
Q psy6213 98 RTV-----NKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTE----S------V-RDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 98 ~~i-----~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~------v-~~~~~~~~~~~~~~~~~~ 161 (330)
... .+.... + ..++.+..++.+..+|.++++.+........ . + .+..+ .+. .++.++.
T Consensus 176 ~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~-~vy~~~~ 249 (377)
T TIGR03300 176 PALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGG-QVYAVSY 249 (377)
T ss_pred CceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECC-EEEEEEc
Confidence 111 111222 2 4677888889999999999887654331100 0 0 01111 133 4777788
Q ss_pred CCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccc-cceEEEEEcCCCCe
Q psy6213 162 NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI-ASVSRIKWRPQRKF 240 (330)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~ 240 (330)
+|.++.+|.+++ +..-... . ........ .+..++.++.||.+..+|..+++.+....... ........ .+..
T Consensus 250 ~g~l~a~d~~tG-~~~W~~~-~-~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~ 322 (377)
T TIGR03300 250 QGRVAALDLRSG-RVLWKRD-A-SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGY 322 (377)
T ss_pred CCEEEEEECCCC-cEEEeec-c-CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCE
Confidence 999999999874 3333322 1 11122222 46678888899999999998885543321211 11222222 2445
Q ss_pred EEEEeecccCCeEEEEEccCCCccceEeecCCCCeEE-EEEecCCCEEEEeecCCeEeee
Q psy6213 241 HLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSG-LAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 241 l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~iw 299 (330)
+++.. .+|.++++|..+++. +..+..+...+.. .++. + +.|+.++.||.|+.|
T Consensus 323 l~~~~---~~G~l~~~d~~tG~~-~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 323 LVVGD---FEGYLHWLSREDGSF-VARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEe---CCCEEEEEECCCCCE-EEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 45544 599999999998876 5566655543322 2232 3 358889999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-09 Score=79.24 Aligned_cols=201 Identities=12% Similarity=0.145 Sum_probs=115.8
Q ss_pred ceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccC-----CcEEEEEcCCCcEEEE
Q psy6213 7 VHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE-----ENHIATGATNGAVVVW 79 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~iw 79 (330)
=+.++||||+.+++.. .|+|++||+...++.. +.............|..+.|.+.. ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~-I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFV-IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEE-cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 3578999999996555 9999999998755443 222222233344556777776522 2356666778888877
Q ss_pred ECCC--CCCCceeEEec---ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCc
Q psy6213 80 NLGQ--ISRSKQERVFN---DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPY 154 (330)
Q Consensus 80 ~~~~--~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 154 (330)
-+.. ....+....+. .+...|.++.++| ..++|++||.... +.+. -+.....+++-..-.+.++
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCc
Confidence 7532 22233333333 2467899999998 6677777765322 0000 0011222333333223222
Q ss_pred EEE-EEecCCc------EEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc
Q psy6213 155 AFA-SVSENGT------IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE 220 (330)
Q Consensus 155 ~~~-~~~~dg~------i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 220 (330)
... +...|+. ..+|.+-+ .............|..|..+|||+.|++...+|.|.+|++.+.+...
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred EEEccccCccccccccccceeeccc-eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 211 1111111 12222221 11111112345789999999999999999999999999998875433
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-10 Score=97.98 Aligned_cols=184 Identities=17% Similarity=0.203 Sum_probs=140.6
Q ss_pred CCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeE
Q psy6213 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIF 188 (330)
Q Consensus 109 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~ 188 (330)
++..++.|+....+..+|+++.+..+........+.-+.. +++ .+.+|...|+|.+-|.++ .+.++++..|.+.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCc-EEEeecccceEEeecCCc-Cceeeeeecccccee
Confidence 4567778888888999999988877776655555655553 345 689999999999999998 788999999999998
Q ss_pred EEEEcCCCCEEEEEec---------CCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEE--
Q psy6213 189 ACDWHPEHAWLATASR---------DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD-- 257 (330)
Q Consensus 189 ~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d-- 257 (330)
.+.. .|+.|++++. |.-|+|||+++.+.+.- ........-+.|+|.-...++.++ ..|...+-|
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-I~~~~~P~flrf~Psl~t~~~V~S--~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-IQFPYGPQFLRFHPSLTTRLAVTS--QSGQFQFVDTA 296 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC-cccccCchhhhhcccccceEEEEe--cccceeecccc
Confidence 7766 4889999885 45589999998854332 233333466788887665566666 699999999
Q ss_pred -ccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 258 -IRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 258 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
+.++..-..........+.++.++++++.|+.+..+|.|.+|..
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 44443323444444556999999999999999999999999974
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=99.48 Aligned_cols=243 Identities=16% Similarity=0.283 Sum_probs=168.2
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEec-ccccceeEEEEEecC-CCEEEEEecCCcEEEEEeec
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFN-DHKRTVNKVSFHYVE-SNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~-~~~l~~~~~d~~i~i~d~~~ 129 (330)
..+.++..+| .++-++.++.-| +.+.|+..+ ..+..-+. ...-.+-...|+|.. ..+-++......-.+|++..
T Consensus 25 ~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p--~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 25 GGFNAVSINP-SGRDIVLASRQG-LYIIDLDDP--FTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred Ccccceeecc-ccchhhhhhhcC-eEEEeccCC--CCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 3457889999 888888888776 667788763 22222222 122356677887622 23444444455677898753
Q ss_pred C---ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCC
Q psy6213 130 Q---ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDK 206 (330)
Q Consensus 130 ~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 206 (330)
. .....+.+|...++.+.|+|+.+-++++++.|..+..||++++..++.....-......++|+-....+.+.+..+
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 2 2344567899999999999999989999999999999999998888888777667788999998655566666778
Q ss_pred cEEEEeCCCCcccc-ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec--C
Q psy6213 207 TIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG--D 283 (330)
Q Consensus 207 ~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~ 283 (330)
.|++||++.+.... ....+...+..+.|..--...+.+++ .|++|+.||..+.............+|+.-.+.| +
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~--~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS--NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC--CCCceeeecccccccccceeccccCcceeccccccCc
Confidence 89999999885543 34446777888888765444566666 6999999999865432333334456777777777 4
Q ss_pred CCEEEEeecCCeEeeee
Q psy6213 284 PQLFIASSRVSIIPRAK 300 (330)
Q Consensus 284 ~~~l~s~~~dg~i~iw~ 300 (330)
|..+.-.-.+..+.+..
T Consensus 259 g~~~mp~~G~n~v~~~~ 275 (1081)
T KOG0309|consen 259 GYCIMPMVGGNMVPQLR 275 (1081)
T ss_pred eeEeccccCCeeeeecc
Confidence 44433333333444443
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-11 Score=98.14 Aligned_cols=240 Identities=13% Similarity=0.134 Sum_probs=157.7
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCC----CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISR----SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
|..++--. +.+-+++++.|.+|++|.+..... ..+..++..|+.+|.++.|.. +.++++++ ||-|.+||.--
T Consensus 738 iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlWDPFi 813 (1034)
T KOG4190|consen 738 IRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLWDPFI 813 (1034)
T ss_pred hHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceeecccc
Confidence 34444333 788899999999999999875322 235667889999999999996 66677665 78999999877
Q ss_pred Cceeeeeec--CCCCeEEEEEcCC-CCcEEEEE-ecCCcEEEEecCCCccceeee-----ccCCCCeEEEEEcCCCCEEE
Q psy6213 130 QESTKIFHS--NTESVRDVEFNPH-SPYAFASV-SENGTIQQWDVRRPEKCFYQF-----TAHSGPIFACDWHPEHAWLA 200 (330)
Q Consensus 130 ~~~~~~~~~--~~~~v~~~~~~~~-~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~ 200 (330)
++++..+.. ..+.+..+..-++ .+.+++++ +...+|+++|.+.. .-...+ .+....+.+++..+.|++++
T Consensus 814 gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc-e~~~E~kVcna~~Pna~~R~iaVa~~GN~lA 892 (1034)
T KOG4190|consen 814 GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC-EWTCELKVCNAPGPNALTRAIAVADKGNKLA 892 (1034)
T ss_pred cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc-cceeeEEeccCCCCchheeEEEeccCcchhh
Confidence 766654332 2233333433344 33345555 77889999999873 322222 23446688999999999999
Q ss_pred EEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEE-EEccCCCccceEeecCCCCeEEEE
Q psy6213 201 TASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNV-WDIRRPYIPLASFTEHKDVVSGLA 279 (330)
Q Consensus 201 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i-~d~~~~~~~~~~~~~~~~~v~~~~ 279 (330)
.+-.+|.|.+.|.++++.+....+.......++- |..+.++.+. .|.++.+ |....+.. .........+..-+.
T Consensus 893 a~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sa---ldHslaVnWhaldgim-h~q~kpppepahflq 967 (1034)
T KOG4190|consen 893 AALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSA---LDHSLAVNWHALDGIM-HLQDKPPPEPAHFLQ 967 (1034)
T ss_pred HHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhc---ccceeEeeehhcCCee-eeccCCCCcchhhhh
Confidence 9999999999999999766666555555555543 4445444444 4888888 87766643 222222222211111
Q ss_pred EecCCCEEEEeecCCeEeeeecccee
Q psy6213 280 WRGDPQLFIASSRVSIIPRAKNIKIF 305 (330)
Q Consensus 280 ~~~~~~~l~s~~~dg~i~iw~~~~~~ 305 (330)
.-|..|+++.....+.+|......
T Consensus 968 --svgpSLV~a~~Gn~lgVYad~a~~ 991 (1034)
T KOG4190|consen 968 --SVGPSLVTAQNGNILGVYADSAEL 991 (1034)
T ss_pred --ccCceeEEeccCcEEEEEecchhh
Confidence 135567777777777777654333
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-08 Score=75.50 Aligned_cols=230 Identities=13% Similarity=0.090 Sum_probs=150.2
Q ss_pred eeeeeecccCCcEEEEEcCCCc-EEEEECCCCCCCceeEEecccccce--eEEEEEecCCCEEEEEec-----CCcEEEE
Q psy6213 54 CNDVAWSCIEENHIATGATNGA-VVVWNLGQISRSKQERVFNDHKRTV--NKVSFHYVESNWLISGSQ-----DGTMRLF 125 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~i--~~i~~~~~~~~~l~~~~~-----d~~i~i~ 125 (330)
...++.+|.....++.+-.-|. ..+||..+ .+....+....+.- =.-.|++ ++++|++.-. .|.|-+|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~---g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRT---GQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCC---CceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEE
Confidence 3567888866677777777765 66788877 44444433222211 1357898 8888888644 4789999
Q ss_pred Eee-cCceeeeeecCCCCeEEEEEcCCCCcEEEEEe-----------------cCCcEEEEecCCCccceee--e--ccC
Q psy6213 126 DIR-CQESTKIFHSNTESVRDVEFNPHSPYAFASVS-----------------ENGTIQQWDVRRPEKCFYQ--F--TAH 183 (330)
Q Consensus 126 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------~dg~i~i~d~~~~~~~~~~--~--~~~ 183 (330)
|.. +.+.+.++..+.-....+.+.|+++.+++.-+ .+..+...|..+ ++.+.. + ..|
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s-G~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS-GALLEQVELPPDLH 161 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC-CceeeeeecCcccc
Confidence 998 66778888877777788999999975443321 122344555555 343333 3 337
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCc-------EEEEeCCCCcccc-----ceeccccceEEEEEcCCCCeEEEEeecccCC
Q psy6213 184 SGPIFACDWHPEHAWLATASRDKT-------IKVWDLSIKPSLE-----YSINTIASVSRIKWRPQRKFHLASCSLVVDS 251 (330)
Q Consensus 184 ~~~i~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 251 (330)
...|..+++.++|..++..-..|. +-+++....-... ........+-++++++++..+++++- ..+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg 239 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGG 239 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCC
Confidence 778999999999886666554443 4444433321111 11223578999999999998777777 799
Q ss_pred eEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 252 SVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 252 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
.+.+||..++.. +.... -..+..++-.+++ ++++.+.-.
T Consensus 240 ~~~~~d~~tg~~-~~~~~--l~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 240 RVAVWDAATGRL-LGSVP--LPDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred EEEEEECCCCCE-eeccc--cCceeeeeecCCc-eEEeCCCcc
Confidence 999999999875 33332 2346777777666 666655433
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.7e-09 Score=90.89 Aligned_cols=236 Identities=14% Similarity=0.163 Sum_probs=170.2
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEec-----------CCCEEEEEecCCcEE
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV-----------ESNWLISGSQDGTMR 123 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-----------~~~~l~~~~~d~~i~ 123 (330)
.++.|+| +.++|.|+. ..|.+-|..+ .+.++.+..|+..|+.+.|.|. ..-+|+++...|.|.
T Consensus 19 ~A~Dw~~--~GLiAygsh-slV~VVDs~s---~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 19 NAADWSP--SGLIAYGSH-SLVSVVDSRS---LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccCc--cceEEEecC-ceEEEEehhh---hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 6788997 778888875 4688889887 7888889999999999999872 122577888889999
Q ss_pred EEEeecCceeeeeecCCCCeEEEEEcC---CCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEE
Q psy6213 124 LFDIRCQESTKIFHSNTESVRDVEFNP---HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWL 199 (330)
Q Consensus 124 i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l 199 (330)
+||...+..+..+..+..++..++|-+ +.++++++-.....+.+|+..++++ .-..........++.+.| |.+.+
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceE
Confidence 999999988888988899999999875 3445777777788999999998544 333333445667788888 66677
Q ss_pred EEEecCCcEEEEeCCCCcc-------ccceecccc-------------------------ceEEEEEcCCCCeEEEEeec
Q psy6213 200 ATASRDKTIKVWDLSIKPS-------LEYSINTIA-------------------------SVSRIKWRPQRKFHLASCSL 247 (330)
Q Consensus 200 ~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~-------------------------~v~~~~~~~~~~~l~~~~~~ 247 (330)
...+..|.+.+-+.-...+ ......|.. .....+|+|.-+.++...-
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~- 250 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF- 250 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-
Confidence 7777777777766432211 110111000 1223577888776666664
Q ss_pred ccCCeEEEEEccCCCccceEeecCCCCeEEEEEecC--CCEEEEeecCCeEeeeec
Q psy6213 248 VVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGD--PQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 248 ~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~iw~~ 301 (330)
...+.++|++-... +....-..+.+.-+.|-|+ ...|++.-.||.+.+|..
T Consensus 251 --prellv~dle~~~~-l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 251 --PRELLVFDLEYECC-LAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred --ccceEEEcchhhce-eEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 89999999987654 6655555555666667664 457899999999999963
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=86.45 Aligned_cols=101 Identities=12% Similarity=0.207 Sum_probs=83.4
Q ss_pred EEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcE
Q psy6213 76 VVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
+++.+..+ .+....+..+...|.+++|+|....++..++.+..|++.|+++...+..+..+ ..+.+++|.-+..+.
T Consensus 175 v~~l~~~~---fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHD---FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCC---cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcce
Confidence 55555544 44455677888999999999966668999999999999999999888888866 789999999999988
Q ss_pred EEEEecCCcEEEEecCCCccceeee
Q psy6213 156 FASVSENGTIQQWDVRRPEKCFYQF 180 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~~~~~~~~ 180 (330)
+.+|..+|.|.+||++.+..++..+
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMEL 275 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhh
Confidence 9999999999999999866544433
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-09 Score=91.46 Aligned_cols=285 Identities=11% Similarity=0.091 Sum_probs=186.2
Q ss_pred ccceEEEEeeCCCeeecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc-----------CCcEEEEEcCC
Q psy6213 5 SPVHKHGLKADNGLAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI-----------EENHIATGATN 73 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~l~~~~~d 73 (330)
..-.++.|+|.|-++.++...|.+-|..+-+.++.++.|... |+.+.|.|. ..-+||++...
T Consensus 16 sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~-------V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 16 SNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSA-------VTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred ccccccccCccceEEEecCceEEEEehhhhhhhhccccCccc-------eeEEEeccCCCchhccCccccceeEEecccc
Confidence 335678999888654444788889999888888777777643 588888871 12357788888
Q ss_pred CcEEEEECCCCCCCceeEEecccccceeEEEEEec--CC-CEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcC
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV--ES-NWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 150 (330)
|.|.+||... ...+..+..|.+++..++|-+. +. ..|++-.....+.+|+..+|+.............|+.+.|
T Consensus 89 GrIil~d~~~---~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 89 GRIILVDFVL---ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP 165 (1062)
T ss_pred CcEEEEEehh---hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCC
Confidence 9999999987 6667778889999999999762 22 5666666678999999999999888877777788899999
Q ss_pred CCCcEEEEEecCCcEEEEecCCC------ccceeeeccCCC----------------C---------eEEEEEcCCCCEE
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRP------EKCFYQFTAHSG----------------P---------IFACDWHPEHAWL 199 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~----------------~---------i~~~~~~~~~~~l 199 (330)
-+..-+..-+..|.+.+.+.-.. ++..+.-..|.. . ...++|+|.-+.+
T Consensus 166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 77656666667777777654321 111111112211 0 1235678866555
Q ss_pred EEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCC--CeEEEEeecccCCeEEEEEccCCCc----c---------
Q psy6213 200 ATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQR--KFHLASCSLVVDSSVNVWDIRRPYI----P--------- 264 (330)
Q Consensus 200 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~~~~~i~i~d~~~~~~----~--------- 264 (330)
+.......+.++|++-...+....-..+.+.-+.+-|++ ..|++.- .+|.+.+|--+.... +
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH---~nG~ltirvrk~~~~~f~~~~~~l~~dl~ 322 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLH---SNGRLTIRVRKEEPTEFKKPNASLSMDLG 322 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEe---cCCeEEEEEeeccCccccccchhhccccc
Confidence 555666789999998775544444444555556666654 4444444 599999997654211 0
Q ss_pred --ceEeec-CCCCeEEEEEecC-CCEEEEeecCCeEeeeecc
Q psy6213 265 --LASFTE-HKDVVSGLAWRGD-PQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 265 --~~~~~~-~~~~v~~~~~~~~-~~~l~s~~~dg~i~iw~~~ 302 (330)
...+.. .+..+......|. ...++.--.+|.+.+|+..
T Consensus 323 ~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~ 364 (1062)
T KOG1912|consen 323 EQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLS 364 (1062)
T ss_pred cceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhh
Confidence 111110 1112233334453 4455555678888999765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.4e-08 Score=79.42 Aligned_cols=221 Identities=14% Similarity=0.132 Sum_probs=153.8
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEeccc---c-----cceeEEE-EEecCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDH---K-----RTVNKVS-FHYVESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~---~-----~~i~~i~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
+|+.++.. ..|.|.+||.++....+...-+... + .+..-+. |++.++++++..+. |+..+.+...+-.+
T Consensus 277 DGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i 354 (668)
T COG4946 277 DGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI 354 (668)
T ss_pred CCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE
Confidence 67776654 4578999998873322211111111 0 1111111 44457899998885 78888876655443
Q ss_pred eeeecCCCCeEEEEEcCCCCcEEEEEecCC-cEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEe
Q psy6213 134 KIFHSNTESVRDVEFNPHSPYAFASVSENG-TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212 (330)
Q Consensus 134 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 212 (330)
+. ++...|.-..+.-+++ -++.|..|| .+-++|.+++ ..+.+...-+.|.++..+|+|++++.+.....+.+.|
T Consensus 355 qv--~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~--e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 355 QV--GKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG--EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred Ec--CCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCc--eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 32 3556688888887777 488899998 8999999863 3566677788999999999999999999999999999
Q ss_pred CCCCccccceeccccceEEEEEcCCCCeEEEEeec-ccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEee
Q psy6213 213 LSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSL-VVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
+.++..........+-|+...|+|++++++.+--. .....|+++|+.+++. .......+.=.+-+|.||+++|.--+
T Consensus 430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki--y~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI--YDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE--EEecCCcccccCcccCCCCcEEEEEe
Confidence 99997666666667889999999999985544320 0134799999998763 33333333335668899999887765
Q ss_pred c
Q psy6213 292 R 292 (330)
Q Consensus 292 ~ 292 (330)
.
T Consensus 508 ~ 508 (668)
T COG4946 508 A 508 (668)
T ss_pred c
Confidence 4
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-10 Score=89.36 Aligned_cols=164 Identities=12% Similarity=0.140 Sum_probs=107.8
Q ss_pred ceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 7 VHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
...+..+|++++++++ +....++++..... .........+....+++.|.. +......+..-|.++-+|+-..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK----GAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC----cceeeeEeecccCcceeeeee-ccceEEEEeecCCceeeeeecc
Confidence 4455677888886666 55666777665332 111111222222235666665 4444444444444444443321
Q ss_pred CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee-cCCCCeEEEEEcCCCCcEEEEEecCC
Q psy6213 85 SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH-SNTESVRDVEFNPHSPYAFASVSENG 163 (330)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~dg 163 (330)
.+ .....+-+|-+.+..++|+| |++.++++..|..|++-.....-.+..+- +|+..|..++.-++. .|++++.|+
T Consensus 140 ~~-~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sGD~ 215 (390)
T KOG3914|consen 140 DS-GRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSGDK 215 (390)
T ss_pred cc-cCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCCCC
Confidence 11 23334558999999999999 88999999999999998877655555554 599999999998776 589999999
Q ss_pred cEEEEecCCCccceeee
Q psy6213 164 TIQQWDVRRPEKCFYQF 180 (330)
Q Consensus 164 ~i~i~d~~~~~~~~~~~ 180 (330)
++++||+++ ++.+..+
T Consensus 216 tlr~Wd~~s-gk~L~t~ 231 (390)
T KOG3914|consen 216 TLRLWDITS-GKLLDTC 231 (390)
T ss_pred cEEEEeccc-CCccccc
Confidence 999999998 4444444
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.5e-08 Score=81.51 Aligned_cols=258 Identities=11% Similarity=0.038 Sum_probs=150.6
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEe
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVF 93 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 93 (330)
++..++.+ ++.+.-+|..+|+..-......... ..... +++.+++++.+|.+..+|..+ ++..-..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~-------~~p~v---~~~~v~v~~~~g~l~ald~~t---G~~~W~~ 131 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS-------GGVGA---DGGLVFVGTEKGEVIALDAED---GKELWRA 131 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc-------cceEE---cCCEEEEEcCCCEEEEEECCC---CcEeeee
Confidence 44445555 8999999999988765544443211 11221 567788888899999999877 4444333
Q ss_pred cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeE-----EEEEcCCCCcEEEEEecCCcEEEE
Q psy6213 94 NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVR-----DVEFNPHSPYAFASVSENGTIQQW 168 (330)
Q Consensus 94 ~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~~dg~i~i~ 168 (330)
... ..+.+.-.. .+..++.++.++.++.||.++++.+..+........ +.... + . .++.+..+|.+..+
T Consensus 132 ~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~-~v~~~~~~g~v~al 205 (377)
T TIGR03300 132 KLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-G-GVLVGFAGGKLVAL 205 (377)
T ss_pred ccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-C-EEEEECCCCEEEEE
Confidence 222 222221111 245677778899999999999988776654322111 11121 2 3 46778888999999
Q ss_pred ecCCCccceeeecc-CC---CC---eEEEEEcC--CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 169 DVRRPEKCFYQFTA-HS---GP---IFACDWHP--EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 169 d~~~~~~~~~~~~~-~~---~~---i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
|.+++. .+-.... .. .. ...+.-+| .+..+++++.+|.++.||..+++...... .. ....... .+.
T Consensus 206 d~~tG~-~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~-~~~~p~~--~~~ 280 (377)
T TIGR03300 206 DLQTGQ-PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-AS-SYQGPAV--DDN 280 (377)
T ss_pred EccCCC-EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-cC-CccCceE--eCC
Confidence 998743 2222110 00 00 00011111 35578888889999999998885433222 11 1112222 344
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeecC-CCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEH-KDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+++.. .+|.+..+|..+++. +-..... ......... .+..|++++.+|.|++++..
T Consensus 281 ~vyv~~---~~G~l~~~d~~tG~~-~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 281 RLYVTD---ADGVVVALDRRSGSE-LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred EEEEEC---CCCeEEEEECCCCcE-EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 455554 499999999988865 3222111 111222222 46688899999999999753
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=94.44 Aligned_cols=283 Identities=14% Similarity=0.141 Sum_probs=169.6
Q ss_pred CCcccceEEEEeeCCC-eeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNG-LAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~-~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|+..|++++--.+.+ +++++ |.+|++|.+....-......-.-....+..+|.++.|-. +.+.+++ .||.|.+|
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--cD~giHlW 809 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--CDGGIHLW 809 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--ccCcceee
Confidence 5778888876554444 48888 999999998762111110000011112233467888876 6666664 47889999
Q ss_pred ECCCCCCCceeEEec--ccccceeEEEEEec-CCCEEEEE-ecCCcEEEEEeecCceeeeeec-----CCCCeEEEEEcC
Q psy6213 80 NLGQISRSKQERVFN--DHKRTVNKVSFHYV-ESNWLISG-SQDGTMRLFDIRCQESTKIFHS-----NTESVRDVEFNP 150 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~ 150 (330)
|.-- ++.+.... ...+.+..+..-|. +..++..| +...+|+++|.+.++....++. ....+++++..+
T Consensus 810 DPFi---gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 810 DPFI---GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred cccc---cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9755 33332211 11233333333332 34444444 6788999999998887666653 345689999999
Q ss_pred CCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE-EeCCCCccccceeccccce
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV-WDLSIKPSLEYSINTIASV 229 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~v 229 (330)
.|+. ++++-.+|.|.+.|.++ ++.+...+........++- |..+.++....|.++.+ |....+.......+...+.
T Consensus 887 ~GN~-lAa~LSnGci~~LDaR~-G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 887 KGNK-LAAALSNGCIAILDARN-GKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred Ccch-hhHHhcCCcEEEEecCC-CceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence 9995 88888999999999998 6666666655555444443 55667777778888888 8765553222222222221
Q ss_pred EEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc---cceEe--ecCCCCeEEEEEecCCCEEEEeecCCeEee
Q psy6213 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI---PLASF--TEHKDVVSGLAWRGDPQLFIASSRVSIIPR 298 (330)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~---~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 298 (330)
.-+ -.-|+.++.... .+.+.+|.-..... .+..+ ....+..++++--|-+.-+..|.+.|.|.+
T Consensus 964 hfl--qsvgpSLV~a~~---Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 964 HFL--QSVGPSLVTAQN---GNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhh--hccCceeEEecc---CcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 111 112444444433 66677774321110 01112 233467788888886677777888888765
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-07 Score=71.14 Aligned_cols=236 Identities=12% Similarity=0.130 Sum_probs=154.0
Q ss_pred cccceEEEEeeCCCe-eecC---CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-----CC
Q psy6213 4 LSPVHKHGLKADNGL-AQPS---RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-----NG 74 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg 74 (330)
......++.+|+... ++.+ .....+||..+++....+....+... ----.|++ ++++|++.-. .|
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF-----yGHg~fs~-dG~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF-----YGHGVFSP-DGRLLYTTENDYETGRG 77 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE-----ecCEEEcC-CCCEEEEeccccCCCcE
Confidence 345677899996655 5555 67889999999988876655443321 13468999 9999988644 47
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEe------------------cCCcEEEEEeecCceeeee
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGS------------------QDGTMRLFDIRCQESTKIF 136 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~ 136 (330)
.|-|||... ..+.+..+..|.-.-..+.+.| ++..|+++. .+-.+...|..+++.+...
T Consensus 78 ~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 78 VIGVYDAAR--GYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred EEEEEECcC--CcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 899999983 2677778887777777888998 776776653 1235666777888877664
Q ss_pred e----cCCCCeEEEEEcCCCCcEEEEEecCCc-------EEEEecCCCccce----eeeccCCCCeEEEEEcCCCCEEEE
Q psy6213 137 H----SNTESVRDVEFNPHSPYAFASVSENGT-------IQQWDVRRPEKCF----YQFTAHSGPIFACDWHPEHAWLAT 201 (330)
Q Consensus 137 ~----~~~~~v~~~~~~~~~~~~~~~~~~dg~-------i~i~d~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~ 201 (330)
. .|...++.+++.++|. +++..-..|. +-+++....-... .......+.+-+|++++++.++++
T Consensus 155 ~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 155 ELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV 233 (305)
T ss_pred ecCccccccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence 3 2667899999999986 3333322221 3334332210000 011234567899999999987765
Q ss_pred Ee-cCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEE
Q psy6213 202 AS-RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW 256 (330)
Q Consensus 202 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~ 256 (330)
.+ .-+.+.+||..++..+... .-..+..++-.+++ + +++.+ .|.+...
T Consensus 234 tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGva~~~~~-f-~~ssG---~G~~~~~ 282 (305)
T PF07433_consen 234 TSPRGGRVAVWDAATGRLLGSV--PLPDACGVAPTDDG-F-LVSSG---QGQLIRL 282 (305)
T ss_pred ECCCCCEEEEEECCCCCEeecc--ccCceeeeeecCCc-e-EEeCC---CccEEEc
Confidence 55 6778999999988443322 23456667777776 4 55543 5554433
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-09 Score=91.52 Aligned_cols=179 Identities=16% Similarity=0.231 Sum_probs=136.4
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccc
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHK 97 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 97 (330)
+.+| ...+..+|+.+.+..+......+. |.-++ .+++.+.+|...|+|.+-|..+ .+.+.++..|.
T Consensus 151 i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-------v~imR---~Nnr~lf~G~t~G~V~LrD~~s---~~~iht~~aHs 217 (1118)
T KOG1275|consen 151 IMGGLQEKLIHIDLNTEKETRTTNVSASG-------VTIMR---YNNRNLFCGDTRGTVFLRDPNS---FETIHTFDAHS 217 (1118)
T ss_pred eecchhhheeeeecccceeeeeeeccCCc-------eEEEE---ecCcEEEeecccceEEeecCCc---Cceeeeeeccc
Confidence 5555 777778888887766555444322 12232 2779999999999999999988 88999999999
Q ss_pred cceeEEEEEecCCCEEEEEec---------CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEE
Q psy6213 98 RTVNKVSFHYVESNWLISGSQ---------DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~ 168 (330)
+.|.++.. .|++|+++|. |.-|++||++..+.+.-+.-+.++ .-+.|+|.-...+++++..|...+-
T Consensus 218 ~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 218 GSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred cceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 99998885 5788988876 445899999987766655544433 5678889877679999999999999
Q ss_pred e---cCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCC
Q psy6213 169 D---VRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214 (330)
Q Consensus 169 d---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 214 (330)
| +.++...+..+......+..++++++++.++.|..+|.|.+|--+
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 9 443323344445555669999999999999999999999999743
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-08 Score=85.14 Aligned_cols=183 Identities=17% Similarity=0.281 Sum_probs=131.6
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
++|++++ +..|+.|+.+|.|++++... .. .....|... . .+|.++++|+.||+|.+..+-+.+..
T Consensus 42 is~~av~---~~~~~~GtH~g~v~~~~~~~----~~-~~~~~~s~~------~-~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 42 ISCCAVH---DKFFALGTHRGAVYLTTCQG----NP-KTNFDHSSS------I-LEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred HHHHHhh---cceeeeccccceEEEEecCC----cc-ccccccccc------c-cCCceEEEecCCCcEEEeeccCCccc
Confidence 4566664 68999999999999999865 22 333344443 3 38999999999999999999888877
Q ss_pred eeeecCCCCeEEEEEcCC----CCcEEEEEecCCcEEEEecCCCccc-eeeeccCCCCeEEEEEcCCCCEEEEEecCCcE
Q psy6213 134 KIFHSNTESVRDVEFNPH----SPYAFASVSENGTIQQWDVRRPEKC-FYQFTAHSGPIFACDWHPEHAWLATASRDKTI 208 (330)
Q Consensus 134 ~~~~~~~~~v~~~~~~~~----~~~~~~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 208 (330)
.++. ...++.+++++|+ ....+++|+.-| +.++.-+--+.. ...+....++|.++.|. |+++|-+..+| +
T Consensus 107 ~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v 181 (846)
T KOG2066|consen 107 TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-V 181 (846)
T ss_pred eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-c
Confidence 7776 5678999999998 122589999888 777764421111 11355567899999997 88888888776 9
Q ss_pred EEEeCCCCccccceecc------ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 209 KVWDLSIKPSLEYSINT------IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 209 ~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
++||....+.+...... ......+.|.++.. ++.+ +..+|+|..++..
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG----W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG----WGDSVKICSIKKR 235 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe----cCCeEEEEEEecc
Confidence 99999887554333222 22345678888775 3444 5788999988733
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-06 Score=72.91 Aligned_cols=262 Identities=12% Similarity=0.112 Sum_probs=141.6
Q ss_pred eeCCCeeec----------C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 13 KADNGLAQP----------S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 13 s~~~~~~~~----------g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
|||++++.. + .+.+.|||+++++....... ...+....|+| +++.++... ++.|.+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--------~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~ 70 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--------PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDL 70 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--------ETTBSEEEE-S-SSTEEEEEE-TTEEEEESS
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--------ccccccceeec-CCCeeEEEe-cCceEEEEC
Confidence 678888333 2 57889999999776554433 11247889999 899988876 578999987
Q ss_pred CCCCCCceeE-Eecc-------c---------ccceeEEEEEecCCCEEEEEecC-CcE---------------------
Q psy6213 82 GQISRSKQER-VFND-------H---------KRTVNKVSFHYVESNWLISGSQD-GTM--------------------- 122 (330)
Q Consensus 82 ~~~~~~~~~~-~~~~-------~---------~~~i~~i~~~~~~~~~l~~~~~d-~~i--------------------- 122 (330)
.+. ...+ +..+ - -+.-..+-|+| ++++|+....| ..|
T Consensus 71 ~~~---~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~ 146 (353)
T PF00930_consen 71 ATG---QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESI 146 (353)
T ss_dssp TTS---EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEE
T ss_pred CCC---CeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCccccc
Confidence 662 2221 1111 0 12235788999 77777765433 222
Q ss_pred --------------EEEEeecCceeee--e---ecCCCCeEEEEEcCCCCcEEE-EEecCC---cEEEEecCCCccceee
Q psy6213 123 --------------RLFDIRCQESTKI--F---HSNTESVRDVEFNPHSPYAFA-SVSENG---TIQQWDVRRPEKCFYQ 179 (330)
Q Consensus 123 --------------~i~d~~~~~~~~~--~---~~~~~~v~~~~~~~~~~~~~~-~~~~dg---~i~i~d~~~~~~~~~~ 179 (330)
.++|+.+++.... . ......+..+.|.+++..+++ ...++. .+.++|..++......
T Consensus 147 ~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~ 226 (353)
T PF00930_consen 147 RYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVL 226 (353)
T ss_dssp E--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEE
T ss_pred ccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEE
Confidence 2333333332110 0 112344778889888873232 333332 3666777663332222
Q ss_pred eccCCCCe---EEEEEc-CCC-CEEEEEecCCc--EEEEeCCCCccccceeccccceE-EEEEcCCCCeEEEEeeccc--
Q psy6213 180 FTAHSGPI---FACDWH-PEH-AWLATASRDKT--IKVWDLSIKPSLEYSINTIASVS-RIKWRPQRKFHLASCSLVV-- 249 (330)
Q Consensus 180 ~~~~~~~i---~~~~~~-~~~-~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~-- 249 (330)
.....+.| ....+. +++ .++.....||. |.+++...+. ........-.|. -+.++++++.++..+....
T Consensus 227 ~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~ 305 (353)
T PF00930_consen 227 EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPG 305 (353)
T ss_dssp EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTT
T ss_pred EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCC
Confidence 22222322 245554 554 45555557776 4445555553 233333445564 4788999888777776312
Q ss_pred CCeEEEEEcc-CCCccceEeecCCCCeEEEEEecCCCEEEEee
Q psy6213 250 DSSVNVWDIR-RPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 250 ~~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
...|+..++. .+. ...+....+.-..+.|+|++++++-..
T Consensus 306 ~r~lY~v~~~~~~~--~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 306 ERHLYRVSLDSGGE--PKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SBEEEEEETTETTE--EEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred ceEEEEEEeCCCCC--eEeccCCCCCceEEEECCCCCEEEEEE
Confidence 2355555555 332 455554444336899999999877654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-07 Score=82.11 Aligned_cols=204 Identities=15% Similarity=0.170 Sum_probs=135.9
Q ss_pred eecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccc-eeEEEEEecCCCEEEEEecCCc-----EEEEEeecC-
Q psy6213 58 AWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRT-VNKVSFHYVESNWLISGSQDGT-----MRLFDIRCQ- 130 (330)
Q Consensus 58 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~~l~~~~~d~~-----i~i~d~~~~- 130 (330)
+|++ .+..++.|+.+|.|.+++-. .+....++.+... +..+... .+.++|++.+.|+. +++||++.-
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcc-cCceEEEEEeecCCCCceEEEEecccccC
Confidence 5677 88999999999999888754 3455667777666 4444433 35578888777654 899998643
Q ss_pred -----cee---eeee----cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecC--C-CccceeeeccCCCCeEEEEEcCC
Q psy6213 131 -----EST---KIFH----SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR--R-PEKCFYQFTAHSGPIFACDWHPE 195 (330)
Q Consensus 131 -----~~~---~~~~----~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~--~-~~~~~~~~~~~~~~i~~~~~~~~ 195 (330)
+++ +.+. ....++.+++.+.+-+ .+++|-.+|.|..+.-. . .+...........+|+.+++..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 222 1111 1356788999999877 69999999999998422 1 11112222234679999999988
Q ss_pred CCEEEEEecCCcEEEEeCCCCcc-ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee-cCCC
Q psy6213 196 HAWLATASRDKTIKVWDLSIKPS-LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT-EHKD 273 (330)
Q Consensus 196 ~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~ 273 (330)
++.++-......|.+|.+..... ......+..++.|..+++....+++++ +..+.+|+....+. -..+. +|..
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~----~e~l~fY~sd~~~~-cfaf~~g~kk 257 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG----SEFLYFYDSDGRGP-CFAFEVGEKK 257 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec----CceEEEEcCCCcce-eeeecCCCeE
Confidence 87733333345799999986542 233455678899999988777544443 78899999875543 33443 5543
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.3e-10 Score=94.51 Aligned_cols=200 Identities=16% Similarity=0.244 Sum_probs=139.3
Q ss_pred eeeeeecccCC-cEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEe----cCCcEEEEEee
Q psy6213 54 CNDVAWSCIEE-NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGS----QDGTMRLFDIR 128 (330)
Q Consensus 54 v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~----~d~~i~i~d~~ 128 (330)
+.|+++..... ..+++|..+|.|.+-....... .......++..+.++++|++-|.+.||.|- .|..+.+||+.
T Consensus 59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred ceeehhhcCCchhhhhhccccCceEEeecCCccc-ccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 46777765233 5788999999999988876322 223456678899999999997778888873 35689999998
Q ss_pred cC--ceee--eeec-CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEE
Q psy6213 129 CQ--ESTK--IFHS-NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATA 202 (330)
Q Consensus 129 ~~--~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~ 202 (330)
++ .+.. .+.. ......+++|..+.+ ++.+|.....+.++|++........+ ....+..+...| .+.++++-
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 76 2221 1222 234456888887776 78899999999999999522222222 234566778888 77787766
Q ss_pred ecCCcEEEEe-CCCCccccceecc-----ccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 203 SRDKTIKVWD-LSIKPSLEYSINT-----IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 203 ~~dg~i~i~d-~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
. ||.|.+|| .++-+.......+ ...+..++|.|...-++++... ..++|++||+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R-dS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR-DSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc-CcceEEEeccc
Confidence 6 89999999 4444332222222 2359999999987777777763 57899999986
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-09 Score=84.32 Aligned_cols=148 Identities=14% Similarity=0.187 Sum_probs=107.8
Q ss_pred EEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCC----ccceeeeccCCCCeEE
Q psy6213 114 ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP----EKCFYQFTAHSGPIFA 189 (330)
Q Consensus 114 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~i~~ 189 (330)
++.+.+..+-+-|++++-. +.+. ..+.|.++.|...++ ++..|..+|.|..+|++.. +.+...+- |...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 5556677899999987743 3333 567899999998887 8999999999999999974 33444443 8889999
Q ss_pred EEEcC-CCCEEEEEecCCcEEEEeCCCCcc---ccceeccccceE--EEEEcCCCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 190 CDWHP-EHAWLATASRDKTIKVWDLSIKPS---LEYSINTIASVS--RIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 190 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~--~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
+..-. ++++|++.+.+|+|++||++..++ +....+|...-. -+-..+....+++ ++ +|...+||.++.+..
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s-~G--dDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS-VG--DDCYTRIWSLDSGHL 380 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE-cc--CeeEEEEEecccCce
Confidence 88776 788999999999999999998766 334444432222 2233455555455 55 699999999998875
Q ss_pred cceEee
Q psy6213 264 PLASFT 269 (330)
Q Consensus 264 ~~~~~~ 269 (330)
+.+++
T Consensus 381 -l~tip 385 (425)
T KOG2695|consen 381 -LCTIP 385 (425)
T ss_pred -eeccC
Confidence 44443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.4e-07 Score=70.34 Aligned_cols=219 Identities=10% Similarity=0.086 Sum_probs=130.2
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeE
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNK 102 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~ 102 (330)
+|.|..||..+++.+-........ ... .+. ..+ +++.+++++.++.+..||..+ ++..-.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~----~~~-~~~-~~~-~~~~v~~~~~~~~l~~~d~~t---G~~~W~~~~-~~~~~~ 70 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGI----GGP-VAT-AVP-DGGRVYVASGDGNLYALDAKT---GKVLWRFDL-PGPISG 70 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSC----SSE-EET-EEE-ETTEEEEEETTSEEEEEETTT---SEEEEEEEC-SSCGGS
T ss_pred CCEEEEEECCCCCEEEEEECCCCC----CCc-cce-EEE-eCCEEEEEcCCCEEEEEECCC---CCEEEEeec-cccccc
Confidence 578999999888877666542211 000 111 222 567777778899999999988 565555443 222221
Q ss_pred EEEEecCCCEEEEEecCCcEEEEEeecCceeeee-ecCC---CCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee
Q psy6213 103 VSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF-HSNT---ESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY 178 (330)
Q Consensus 103 i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 178 (330)
.... .+..+++++.++.++.+|..+++.+... .... ...........++ .++.+..++.|..+|+++ ++.+-
T Consensus 71 ~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~t-G~~~w 146 (238)
T PF13360_consen 71 APVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKT-GKLLW 146 (238)
T ss_dssp GEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT-EEEEEETCSEEEEEETTT-TEEEE
T ss_pred eeee--cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC-EEEEEeccCcEEEEecCC-CcEEE
Confidence 1222 4566677778889999999999988774 3221 1112222222355 477778799999999998 44444
Q ss_pred eeccCCCC----------eEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecc
Q psy6213 179 QFTAHSGP----------IFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLV 248 (330)
Q Consensus 179 ~~~~~~~~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 248 (330)
........ +..-....++ .++.++.++.+.-+|+.+++... ... ......+ ...++..+++..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~-~~~~~~~-~~~~~~~l~~~~--- 219 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKP-ISGIYSL-PSVDGGTLYVTS--- 219 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EEC-SS-ECEC-EECCCTEEEEEE---
T ss_pred EeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-Eec-CCCccCC-ceeeCCEEEEEe---
Confidence 44332211 1122222244 77777777764444999986442 323 2333331 345666555555
Q ss_pred cCCeEEEEEccCCCc
Q psy6213 249 VDSSVNVWDIRRPYI 263 (330)
Q Consensus 249 ~~~~i~i~d~~~~~~ 263 (330)
.++.+..||+++++.
T Consensus 220 ~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 220 SDGRLYALDLKTGKV 234 (238)
T ss_dssp TTTEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCCE
Confidence 499999999999864
|
... |
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.3e-10 Score=97.43 Aligned_cols=211 Identities=18% Similarity=0.244 Sum_probs=146.5
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC--cEEEEEeec-
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG--TMRLFDIRC- 129 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~- 129 (330)
.-+|++|+- +.+.|++|+..|.|+++++.+ +.......+|..+|+-+.-+. ++..+++.+.-. -..+|++..
T Consensus 1103 ~fTc~afs~-~~~hL~vG~~~Geik~~nv~s---G~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1103 LFTCIAFSG-GTNHLAVGSHAGEIKIFNVSS---GSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred ceeeEEeec-CCceEEeeeccceEEEEEccC---ccccccccccccccccccccC-CcceeeeeccccCchHHHhccccc
Confidence 358999998 999999999999999999998 777888899999999999886 677666554433 467899864
Q ss_pred CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc---CCCCeEEEEEcCCCCEEEEEecCC
Q psy6213 130 QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA---HSGPIFACDWHPEHAWLATASRDK 206 (330)
Q Consensus 130 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg 206 (330)
+...+++. .-.++.|+..... -+.|.......+||+++...+...+.+ ....-+...|+|+.++++ .||
T Consensus 1178 ~~~~Hsf~----ed~~vkFsn~~q~-r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG 1249 (1516)
T KOG1832|consen 1178 GGPRHSFD----EDKAVKFSNSLQF-RALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG 1249 (1516)
T ss_pred cCcccccc----ccceeehhhhHHH-HHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc
Confidence 34455554 3457788877553 445555567899999985544333332 222347788999988876 344
Q ss_pred cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCE
Q psy6213 207 TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQL 286 (330)
Q Consensus 207 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 286 (330)
.+||.+..+.+..+.... .-..-.|+|.|..+++-.. |||+++.+. ++....- .-..+.|+..|..
T Consensus 1250 --vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINSE--------IwD~RTF~l-Lh~VP~L--dqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINSE--------IWDMRTFKL-LHSVPSL--DQCAVTFNSTGDV 1315 (1516)
T ss_pred --eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeech--------hhhhHHHHH-HhcCccc--cceEEEeccCccc
Confidence 489999885544443333 3334479999998665543 899998876 4433322 2356677777776
Q ss_pred EEEe
Q psy6213 287 FIAS 290 (330)
Q Consensus 287 l~s~ 290 (330)
++..
T Consensus 1316 mYa~ 1319 (1516)
T KOG1832|consen 1316 MYAM 1319 (1516)
T ss_pred hhhh
Confidence 6543
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.1e-10 Score=96.65 Aligned_cols=200 Identities=18% Similarity=0.250 Sum_probs=147.9
Q ss_pred CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC-cE
Q psy6213 87 SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG-TI 165 (330)
Q Consensus 87 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg-~i 165 (330)
.+..+.+..|....+|++|+- +.+.|+.|+..|.|++|++.+|........|..+++.+.-+.+|..++.+++... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 455667788999999999996 8899999999999999999999999999999999999999999996555555444 57
Q ss_pred EEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec----cccceEEEEEcCCCCeE
Q psy6213 166 QQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN----TIASVSRIKWRPQRKFH 241 (330)
Q Consensus 166 ~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l 241 (330)
.+|++.....+.+++.. -.++.|+.....-+.|+.-....+||+.+...+..... ....-+.+.|+|+...+
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 79999876666666653 34678887655555566556799999999866544322 22334778999999853
Q ss_pred EEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 242 LASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 242 ~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
+ - ||. +||++..+. ++.+......+ .-.|+|.|..++.-++=--++-|+.
T Consensus 1246 l-n-----dGv--LWDvR~~~a-Ih~FD~ft~~~-~G~FHP~g~eVIINSEIwD~RTF~l 1295 (1516)
T KOG1832|consen 1246 L-N-----DGV--LWDVRIPEA-IHRFDQFTDYG-GGGFHPSGNEVIINSEIWDMRTFKL 1295 (1516)
T ss_pred e-e-----Cce--eeeeccHHH-Hhhhhhheecc-cccccCCCceEEeechhhhhHHHHH
Confidence 3 2 553 799998854 66665444222 2369999999888776444444443
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-07 Score=82.01 Aligned_cols=237 Identities=13% Similarity=0.162 Sum_probs=144.1
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
.|.++.|.. +.+.++.+...|.|.+-|.++ ........-...|.+++|+| ++..++..+..+++.+.+ .+..+
T Consensus 70 ~i~s~~fl~-d~~~i~v~~~~G~iilvd~et----~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT-~~f~~ 142 (1265)
T KOG1920|consen 70 EIVSVQFLA-DTNSICVITALGDIILVDPET----LELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMT-KDFEP 142 (1265)
T ss_pred ceEEEEEec-ccceEEEEecCCcEEEEcccc----cceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEe-ccccc
Confidence 468888987 888888899999999998776 33333444568899999999 899999888777776654 33333
Q ss_pred eeeeec-----CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe----
Q psy6213 133 TKIFHS-----NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS---- 203 (330)
Q Consensus 133 ~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---- 203 (330)
+..... ..+....+-|-.... -+-|+ .|.....+.....+....... .+.=+++.|--||.++++..
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeT--qfrgs-~gr~~~~~~~~~ek~~~~~~~-~~~~~~IsWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKET--QFRGS-EGRQAARQKIEKEKALEQIEQ-DDHKTSISWRGDGEYFAVSFVESE 218 (1265)
T ss_pred hhccccccccccccccceecccccce--eeecc-hhhhcccccccccccccchhh-ccCCceEEEccCCcEEEEEEEecc
Confidence 322211 112222333333221 11111 122222222111111111111 22335799999999998843
Q ss_pred -cCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc--ceEeecCCCCeEEEEE
Q psy6213 204 -RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP--LASFTEHKDVVSGLAW 280 (330)
Q Consensus 204 -~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~ 280 (330)
....|++||.+ +..-....+....-.+++|-|.|..+.+......++.|.+|.-+....- ...+.....++..++|
T Consensus 219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred CCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeee
Confidence 23789999987 4233333344455678999999997555554445678999986543211 1112233345999999
Q ss_pred ecCCCEEEE---eecCCeEeeeec
Q psy6213 281 RGDPQLFIA---SSRVSIIPRAKN 301 (330)
Q Consensus 281 ~~~~~~l~s---~~~dg~i~iw~~ 301 (330)
+.++..||. ......|++|..
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEe
Confidence 999999998 555666999963
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-08 Score=82.79 Aligned_cols=196 Identities=12% Similarity=0.132 Sum_probs=141.7
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec-CCcEEEEEeecCceeeeeecC--
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ-DGTMRLFDIRCQESTKIFHSN-- 139 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~-- 139 (330)
..+++.+++.||.++.|......-...+..+..|-..|.+++.+- ++.++.+.+. |..++++|+.+-..+..++..
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeeccchhhhcccccC
Confidence 578999999999999998654233455666778889999999985 8888999787 999999999877665444321
Q ss_pred CCCeEEEEEcCCCC--cEEEEEecCCcEEEEecCCCccc-eeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC
Q psy6213 140 TESVRDVEFNPHSP--YAFASVSENGTIQQWDVRRPEKC-FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK 216 (330)
Q Consensus 140 ~~~v~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 216 (330)
.+.+. ...+|... .+.++...+|.+.++|-.....+ .....-|..+|..+.+++.+..+++....|.|.-|.....
T Consensus 98 Pg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~ 176 (558)
T KOG0882|consen 98 PGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP 176 (558)
T ss_pred CCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence 22222 22223211 13334456889999998865433 3444569999999999999999999999999999998731
Q ss_pred -c----c----------ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 217 -P----S----------LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 217 -~----~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
+ . +...........++.|+|++.. ++.-+ .|..|+++++.+++.
T Consensus 177 ~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q-istl~--~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 177 FQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ-ISTLN--PDRKVRGFVFKTGKL 235 (558)
T ss_pred ccCccccccccccccchhhcccccccCccceEEccccCc-ccccC--cccEEEEEEeccchh
Confidence 1 1 1112223467889999999997 55555 699999999988753
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.7e-08 Score=76.26 Aligned_cols=243 Identities=16% Similarity=0.107 Sum_probs=141.1
Q ss_pred CcccceEEEEeeCCC-e-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 3 YLSPVHKHGLKADNG-L-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 3 H~~~v~~~~~s~~~~-~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
|...|..++|||..+ + ..+. +.+|+|.|+++......+..+.. +.+++|.-++.++++.|..+|.|.+|
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~--------~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQ--------IWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCC--------ceeeeeccCCcceeEEeccCceEEEE
Confidence 566799999999888 3 4444 99999999999887777665521 48899988788899999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEe-----cCCCEEEEEecCCcEEEEEeec--Cceeeeeec-CCCCeEEEEEcCC
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHY-----VESNWLISGSQDGTMRLFDIRC--QESTKIFHS-NTESVRDVEFNPH 151 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~-----~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~-~~~~v~~~~~~~~ 151 (330)
|++..+.......-.....+|..++.-+ ..+.+++....+ +..|.+.- +.....++. ..+...++++.+.
T Consensus 264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~ 341 (463)
T KOG1645|consen 264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGV 341 (463)
T ss_pred EccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence 9987433222211112234444444332 134444444433 55665532 222222222 3566778888887
Q ss_pred CCcEEEEEecCCc------EEE-EecCCCcccee-eeccCCC-C------eEEEEEcCCCCEEE-EEecCCcEEEEeCCC
Q psy6213 152 SPYAFASVSENGT------IQQ-WDVRRPEKCFY-QFTAHSG-P------IFACDWHPEHAWLA-TASRDKTIKVWDLSI 215 (330)
Q Consensus 152 ~~~~~~~~~~dg~------i~i-~d~~~~~~~~~-~~~~~~~-~------i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~ 215 (330)
.++++++.-.+.+ +-. -|... +.++. .-..+.+ . -..+.-.++.++++ ++...+.+.+||..+
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~d-G~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRD-GFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeecccc-CceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 7776666543211 111 11111 11111 1111100 0 01111223445444 455667899999998
Q ss_pred CccccceeccccceEEEEEcC-CCCeEEEEeecccCCeEEEEEccC
Q psy6213 216 KPSLEYSINTIASVSRIKWRP-QRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 216 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
. .+........++..++... ++.-+++.-. |..++||..+.
T Consensus 421 ~-evvQ~l~~~epv~Dicp~~~n~~syLa~LT---d~~v~Iyk~es 462 (463)
T KOG1645|consen 421 F-EVVQTLALSEPVLDICPNDTNGSSYLALLT---DDRVHIYKNES 462 (463)
T ss_pred h-heeeecccCcceeecceeecCCcchhhhee---cceEEEEecCC
Confidence 8 4444555567888876644 3443466665 88999887553
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-09 Score=82.26 Aligned_cols=152 Identities=19% Similarity=0.317 Sum_probs=110.7
Q ss_pred eecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC-----ce
Q psy6213 58 AWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-----ES 132 (330)
Q Consensus 58 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~ 132 (330)
+|+-....+-++.+.+-.+-+-|+++ ...+.+. .++.|.++.|.- .++++..|+.+|.|..+|++.+ .+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvet----g~~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVET----GHQQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhccceeeecccccceeEEEEeec----ccccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcc
Confidence 66642222224555566788888887 2223333 668899999984 7899999999999999999865 23
Q ss_pred eeeeecCCCCeEEEEEcC-CCCcEEEEEecCCcEEEEecCCCccc---eeeeccCCCCeEEE--EEcCCCCEEEEEecCC
Q psy6213 133 TKIFHSNTESVRDVEFNP-HSPYAFASVSENGTIQQWDVRRPEKC---FYQFTAHSGPIFAC--DWHPEHAWLATASRDK 206 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~--~~~~~~~~l~~~~~dg 206 (330)
...+- |.+.|+++..-. +++ .|++.+.+|+|++||++. .++ +.++++|-..-.-+ -..+....+++++.|.
T Consensus 292 a~rly-h~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 292 AQRLY-HDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred eEEEE-cCcchhhhhhhccccc-eEeeccCcCceeEeeehh-hhcccceeeeecccccccccccccccccceEEEccCee
Confidence 34443 888999998777 555 578888999999999996 444 67777775543333 3345667888999999
Q ss_pred cEEEEeCCCCcc
Q psy6213 207 TIKVWDLSIKPS 218 (330)
Q Consensus 207 ~i~i~d~~~~~~ 218 (330)
..|||.++.+..
T Consensus 369 ytRiWsl~~ghL 380 (425)
T KOG2695|consen 369 YTRIWSLDSGHL 380 (425)
T ss_pred EEEEEecccCce
Confidence 999999998844
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-06 Score=72.86 Aligned_cols=257 Identities=9% Similarity=0.033 Sum_probs=145.2
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEe
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVF 93 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 93 (330)
+++.++.+ ++.+.-+|.++|+..-....... .. ..... .+..++.+..+|.+..+|.++ ++.+-..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~------ssP~v---~~~~v~v~~~~g~l~ald~~t---G~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-AL------SRPVV---SDGLVLVHTSNGMLQALNESD---GAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc-ee------cCCEE---ECCEEEEECCCCEEEEEEccC---CCEeeee
Confidence 34445555 89999999999887655544321 10 11111 245666778889999999887 4544433
Q ss_pred cccccce-----eEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCC-------CeEEEEEcC--CCCcEEEEE
Q psy6213 94 NDHKRTV-----NKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTE-------SVRDVEFNP--HSPYAFASV 159 (330)
Q Consensus 94 ~~~~~~i-----~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~~~~~~ 159 (330)
....... ..-.. .+..++.++.+|.+..+|..+++.+........ ....+.-+| .+. .++.+
T Consensus 187 ~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~ 262 (394)
T PRK11138 187 NLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYAL 262 (394)
T ss_pred cCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEE
Confidence 3211100 11111 123566777889999999999887655431110 001111122 133 46667
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecc-ccceEEEEEcCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRPQR 238 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~ 238 (330)
+.+|.+..+|..++.. +-... ......+.. .+..++.++.+|.+..+|..+++........ .......... +
T Consensus 263 ~~~g~l~ald~~tG~~-~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~ 335 (394)
T PRK11138 263 AYNGNLVALDLRSGQI-VWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N 335 (394)
T ss_pred EcCCeEEEEECCCCCE-EEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C
Confidence 7889999999988543 22221 111112222 4567888888999999999888543322111 1112222221 3
Q ss_pred CeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEE-EEEecCCCEEEEeecCCeEeeeec
Q psy6213 239 KFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSG-LAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.++++.. .+|.+...|..+++. +.........+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 336 g~l~v~~---~~G~l~~ld~~tG~~-~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 336 GYLVVGD---SEGYLHWINREDGRF-VAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEe---CCCEEEEEECCCCCE-EEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3445554 499999999999875 4444333232322 122 3457888899999988753
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-05 Score=68.34 Aligned_cols=116 Identities=17% Similarity=0.284 Sum_probs=81.4
Q ss_pred CCeEEEEEcCCCCcEEEEEe----cCCc----EEEEecCCCccc--eeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 141 ESVRDVEFNPHSPYAFASVS----ENGT----IQQWDVRRPEKC--FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~----~dg~----i~i~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
....++.|+...++.+.+.. .+|. -.+|+...+.-. ..+--..+..+.+.+++|+...++.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 34467888876666666642 3443 345666542111 1112246788999999999999999999999999
Q ss_pred EeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 211 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
||...+.. ......-.++.++|+|+|.. ++.++ ..|.+.+||+.-.
T Consensus 286 yD~~~~~t--~~~ka~~~P~~iaWHp~gai-~~V~s--~qGelQ~FD~ALs 331 (545)
T PF11768_consen 286 YDTTRGVT--LLAKAEFIPTLIAWHPDGAI-FVVGS--EQGELQCFDMALS 331 (545)
T ss_pred EEcCCCee--eeeeecccceEEEEcCCCcE-EEEEc--CCceEEEEEeecC
Confidence 99877622 23344567889999999996 55555 5899999998643
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-06 Score=79.31 Aligned_cols=236 Identities=14% Similarity=0.157 Sum_probs=135.4
Q ss_pred ccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 5 SPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 5 ~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
+.|.++.|..++.. +.+. .|.|.+-|.++..... +..+...|.+++|+| +++.++..+..+++.+-...
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--------vg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~ 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI--------VGNVDNGISAASWSP-DEELLALITGRQTLLFMTKD 139 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee--------eeeccCceEEEeecC-CCcEEEEEeCCcEEEEEecc
Confidence 57888999888887 3333 8888888887765432 223344579999999 99999999888877664432
Q ss_pred CCCCCceeEE--e---cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 83 QISRSKQERV--F---NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 83 ~~~~~~~~~~--~---~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
- .++.. + ....+..-.+-|-. ...=+-|+ .|.....+....+.........+.=+++.|-.||++ ++
T Consensus 140 f----~~i~E~~L~~d~~~~sk~v~VGwGr--keTqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~-fA 211 (1265)
T KOG1920|consen 140 F----EPIAEKPLDADDERKSKFVNVGWGR--KETQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY-FA 211 (1265)
T ss_pred c----cchhccccccccccccccceecccc--cceeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcE-EE
Confidence 1 11111 1 01112223334432 11111221 122222221111110000011223457899999995 65
Q ss_pred EE-----ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe---cCCcEEEEeCCCCccccce--ecc-c
Q psy6213 158 SV-----SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS---RDKTIKVWDLSIKPSLEYS--INT-I 226 (330)
Q Consensus 158 ~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~--~~~-~ 226 (330)
+. .....|++||.+ +..-..-....+.-.+++|-|.|.++++-. .|+.|.+|..+..+.-... .+. .
T Consensus 212 Vs~~~~~~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEeccCCceeEEEeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 52 222689999976 222222223334456899999999988765 4567999986654332221 222 2
Q ss_pred cceEEEEEcCCCCeEEEE---eecccCCeEEEEEccCCC
Q psy6213 227 ASVSRIKWRPQRKFHLAS---CSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~---~~~~~~~~i~i~d~~~~~ 262 (330)
.++..++|+.++.. ++. .. ....|++|-+.+..
T Consensus 290 ~~ve~L~Wns~sdi-LAv~~~~~--e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDI-LAVVTSNL--ENSLVQLWTTGNYH 325 (1265)
T ss_pred cchheeeecCCCCc-eeeeeccc--ccceEEEEEecCeE
Confidence 34999999999995 544 33 34459999988764
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.4e-09 Score=56.29 Aligned_cols=38 Identities=45% Similarity=0.891 Sum_probs=35.7
Q ss_pred cceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEe
Q psy6213 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212 (330)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 212 (330)
+++..+.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45778999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.5e-09 Score=55.62 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=35.0
Q ss_pred cceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 264 PLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 264 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
++..+.+|.+.|++++|+|++++|++++.|+.|++|+
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3778999999999999999999999999999999995
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-07 Score=75.74 Aligned_cols=280 Identities=12% Similarity=0.129 Sum_probs=174.7
Q ss_pred CcccceEEEEeeCCCeeecC-CCeEEEEEcCCcc---eeeeeceeeccccccccceeeeeecccCCcEEEEEcC-CCcEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTE---FVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-NGAVV 77 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~ 77 (330)
|.+.|+.+.-+...-.+.++ ||.++.|.-..-+ +..-+..|.+ .+..++.+. ++-++.+.+. |..++
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-------~I~sl~~S~-dg~L~~Sv~d~Dhs~K 79 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-------VILSLAVSY-DGWLFRSVEDPDHSVK 79 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHH-------HHHhhhccc-cceeEeeccCccccee
Confidence 77778777665433337777 9999999765422 2222222222 246667776 8888999777 99999
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCC-CEEE-EEecCCcEEEEEeecCc-ee-eeeecCCCCeEEEEEcCCCC
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVES-NWLI-SGSQDGTMRLFDIRCQE-ST-KIFHSNTESVRDVEFNPHSP 153 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~-~~~~d~~i~i~d~~~~~-~~-~~~~~~~~~v~~~~~~~~~~ 153 (330)
++|+++..-...+ .+..-.+.+..+ .+|.+. ..++ +.-.++.+.++|-.... +. ..-..|..+|.++.+.+.+.
T Consensus 80 vfDvEn~Dminmi-KL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 80 VFDVENFDMINMI-KLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred EEEeeccchhhhc-ccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 9999873211111 122222333222 222111 1333 33457899999976443 22 23344889999999999998
Q ss_pred cEEEEEecCCcEEEEecCCCccc--------------eeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc
Q psy6213 154 YAFASVSENGTIQQWDVRRPEKC--------------FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL 219 (330)
Q Consensus 154 ~~~~~~~~dg~i~i~d~~~~~~~--------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 219 (330)
.+++....|.|.-|......+. +..+...+....++.|+|++..+.+-+.|..|++++.++++..
T Consensus 158 -s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 158 -SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred -ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 5888888999999988731111 1112234566889999999999999999999999999887432
Q ss_pred cceec---------------------------------cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccce
Q psy6213 220 EYSIN---------------------------------TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA 266 (330)
Q Consensus 220 ~~~~~---------------------------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~ 266 (330)
+.... ....-+.+.|...+++|+.+. -=.|++.++.++.. ..
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t----~~gikvin~~tn~v-~r 311 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT----ILGIKVINLDTNTV-VR 311 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec----ceeEEEEEeecCeE-EE
Confidence 11100 012345678888999866554 45577888776643 22
Q ss_pred Eeec---------------------------CCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 267 SFTE---------------------------HKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 267 ~~~~---------------------------~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
.+.. ...++ +.+.+|..+++++-....++++.
T Consensus 312 i~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~--~~~~~dpt~~c~a~kk~rfylf~ 370 (558)
T KOG0882|consen 312 ILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL--LEFQKDPTIVCTAFKKNRFYLFR 370 (558)
T ss_pred EeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc--cccCCCCeEEEeeeecceEEEEe
Confidence 2110 11112 23556777777777778888884
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-06 Score=66.01 Aligned_cols=211 Identities=11% Similarity=0.032 Sum_probs=125.7
Q ss_pred CCcEEEEECCCCCCCceeEEecccccceeEEE--EEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcC
Q psy6213 73 NGAVVVWNLGQISRSKQERVFNDHKRTVNKVS--FHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~--~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 150 (330)
+|.|..||..+ ++.+-.... ........ ..+ ++..+++++.++.|+.||..+++.+..+.. ..++.......
T Consensus 2 ~g~l~~~d~~t---G~~~W~~~~-~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRT---GKELWSYDL-GPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD 75 (238)
T ss_dssp TSEEEEEETTT---TEEEEEEEC-SSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE
T ss_pred CCEEEEEECCC---CCEEEEEEC-CCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec
Confidence 67888888877 555554432 11122222 222 467777778899999999999998877775 32222212223
Q ss_pred CCCcEEEEEecCCcEEEEecCCCccceee-eccCC---CCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccc
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQ-FTAHS---GPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI 226 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~-~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 226 (330)
++ .++.++.++.++.+|..++. ..-. ..... ...........+..++.+..++.|..+|.++++.+.......
T Consensus 76 ~~--~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 76 GG--RVYVGTSDGSLYALDAKTGK-VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TT--EEEEEETTSEEEEEETTTSC-EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred cc--ccccccceeeeEecccCCcc-eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 33 36666788899999988844 4443 22221 112223333347888888889999999999986643332221
Q ss_pred cc----------e-EEEEEcCCCCeEEEEeecccCCe-EEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 227 AS----------V-SRIKWRPQRKFHLASCSLVVDSS-VNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 227 ~~----------v-~~~~~~~~~~~l~~~~~~~~~~~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
.. + ..+.+. ++ .++++.. ++. +.+ |+.+++. +-... ...+..+ ..+++..|+.++.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~---~g~~~~~-d~~tg~~-~w~~~--~~~~~~~-~~~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVIS-DG-RVYVSSG---DGRVVAV-DLATGEK-LWSKP--ISGIYSL-PSVDGGTLYVTSSDG 222 (238)
T ss_dssp T-SS--EEEETTEEEEEECC-TT-EEEEECC---TSSEEEE-ETTTTEE-EEEEC--SS-ECEC-EECCCTEEEEEETTT
T ss_pred CCCCcceeeecccccceEEE-CC-EEEEEcC---CCeEEEE-ECCCCCE-EEEec--CCCccCC-ceeeCCEEEEEeCCC
Confidence 11 1 233333 44 5566554 664 555 9999874 22222 2233331 345778888888999
Q ss_pred eEeeeecc
Q psy6213 295 IIPRAKNI 302 (330)
Q Consensus 295 ~i~iw~~~ 302 (330)
.|..|+..
T Consensus 223 ~l~~~d~~ 230 (238)
T PF13360_consen 223 RLYALDLK 230 (238)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 99999864
|
... |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-07 Score=82.28 Aligned_cols=271 Identities=10% Similarity=0.066 Sum_probs=156.2
Q ss_pred eEEEEeeCCCe-eecC-----CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 8 HKHGLKADNGL-AQPS-----RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 8 ~~~~~s~~~~~-~~~g-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
+-.+|+|...+ +++. .|.|.||- ++|+....... +..+++++|+| ..-.|+.|-.-|.+.+|..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--------P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--------PVHATSLCWHP-EEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--------ceehhhhccCh-HHHHHhhccccceeEEEec
Confidence 34579999998 3333 78999984 55653322221 22357899999 8889999999999999998
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee--cCC--C--CeEEEEEcCCCCcE
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH--SNT--E--SVRDVEFNPHSPYA 155 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~--~--~v~~~~~~~~~~~~ 155 (330)
.+ .+.......|+.+|..+.|+| +|+.++++..-|.+.+|.......+.... .|. . ...|...++++..+
T Consensus 89 ~~---~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~ 164 (1416)
T KOG3617|consen 89 NT---TETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEK 164 (1416)
T ss_pred CC---ceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHh
Confidence 77 455555567999999999998 99999999999999999886433222211 111 2 23445556663211
Q ss_pred -----EEEEecCCcEE-EEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccce
Q psy6213 156 -----FASVSENGTIQ-QWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASV 229 (330)
Q Consensus 156 -----~~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 229 (330)
.++.+++..+- .++.+. ........ |. =.|+|..++.++.+|+|+--|-........... +.
T Consensus 165 ~~laKaaVtgDe~alD~~fnwk~-~~a~rs~~-ks-------gv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~d--S~- 232 (1416)
T KOG3617|consen 165 FKLAKAAVTGDESALDEPFNWKE-SLAERSDE-KS-------GVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLD--SE- 232 (1416)
T ss_pred hhhhhhhccCchhhhcccccCcc-chhhcccc-cc-------CCCCCcEEEEEcCCceEEEEcCCCcEEEEEEcc--ch-
Confidence 23333333222 333221 00011111 11 136788899999999998888554322111111 11
Q ss_pred EEEEEcCCCCeEEEEeecccCCeEEEEEcc-CC---------------C----------------ccceEeecCCCCeEE
Q psy6213 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIR-RP---------------Y----------------IPLASFTEHKDVVSG 277 (330)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~-~~---------------~----------------~~~~~~~~~~~~v~~ 277 (330)
..+.|.+....+++..- +-++.++-+. ++ . .+... ......+++
T Consensus 233 vQmLf~~~~eai~~i~e---~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg-~e~ge~~~c 308 (1416)
T KOG3617|consen 233 VQMLFMGYCEAISIIIE---FLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYG-LELGEGILC 308 (1416)
T ss_pred HHHHHhcccceEEEEee---eceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchh-hhcCCceEE
Confidence 11222222222111111 1111111110 00 0 00000 112357999
Q ss_pred EEEecCCCEEEEeecCCeEeeeeccce-eeec
Q psy6213 278 LAWRGDPQLFIASSRVSIIPRAKNIKI-FIAS 308 (330)
Q Consensus 278 ~~~~~~~~~l~s~~~dg~i~iw~~~~~-~~~~ 308 (330)
++++..+..|+.|...|.+.+|..... +...
T Consensus 309 ~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~ 340 (1416)
T KOG3617|consen 309 MCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGD 340 (1416)
T ss_pred EEEeccceEEEecccCCcEEEeeecCccccCC
Confidence 999999999999999999999986644 4433
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.9e-07 Score=75.34 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=80.9
Q ss_pred eeeeecccCCcEEEEE----cCCCc----EEEEECCCCCCCceeEE-ecccccceeEEEEEecCCCEEEEEecCCcEEEE
Q psy6213 55 NDVAWSCIEENHIATG----ATNGA----VVVWNLGQISRSKQERV-FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~----~~dg~----i~iw~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~ 125 (330)
.++.|+-..+..+.+. +.+|. -.+|+....+ .+.... --.....+.+++++| +...++.|+.||.|.+|
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILY 286 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEE
Confidence 6677776445555543 33444 3457765522 222221 224678899999999 88999999999999999
Q ss_pred EeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCC
Q psy6213 126 DIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173 (330)
Q Consensus 126 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 173 (330)
|...+... +....-.++.++|+|+|. ++++|+..|.+.+||+.-+
T Consensus 287 D~~~~~t~--~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTTRGVTL--LAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcCCCeee--eeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecC
Confidence 98765333 223445678999999999 7999999999999998753
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.2e-07 Score=77.81 Aligned_cols=191 Identities=12% Similarity=0.195 Sum_probs=128.4
Q ss_pred EEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC-----cEEEEecCCCc-----
Q psy6213 105 FHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG-----TIQQWDVRRPE----- 174 (330)
Q Consensus 105 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~----- 174 (330)
|++ ++..++.|+.+|.|.+.+-. .+.+..++.+...+...-+.-++..++++.+.|+ .+++||++...
T Consensus 31 ~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 31 CSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 444 78899999999999887743 3444667766666333334444433566666554 48999997531
Q ss_pred cce--eeecc-----CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC----ccccceeccccceEEEEEcCCCCeEEE
Q psy6213 175 KCF--YQFTA-----HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK----PSLEYSINTIASVSRIKWRPQRKFHLA 243 (330)
Q Consensus 175 ~~~--~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~ 243 (330)
.+. ..+.. ...++.+++.+.+-+.+++|-.+|.|..+.-.-. ...........+|+.+++..+++.++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 122 11111 3567889999999999999999999999853221 123334445789999999999987555
Q ss_pred EeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 244 SCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 244 ~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
... ...|.+|.+.........+..|..++.|-.+++....+++++ +..+.+|+.
T Consensus 189 v~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~s 242 (933)
T KOG2114|consen 189 VAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDS 242 (933)
T ss_pred EEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcC
Confidence 554 788999999855422445778888999999988555444443 335666653
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.8e-05 Score=62.34 Aligned_cols=270 Identities=11% Similarity=0.098 Sum_probs=132.8
Q ss_pred EEeeCCCe-eecC----CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC
Q psy6213 11 GLKADNGL-AQPS----RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS 85 (330)
Q Consensus 11 ~~s~~~~~-~~~g----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 85 (330)
+|.+||+. +.++ ...+.+.|+++++..+......... ....++| +.+.++-...+..|.-.|+++
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~-------~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T-- 111 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNT-------FGGFLSP-DDRALYYVKNGRSLRRVDLDT-- 111 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-T-------TT-EE-T-TSSEEEEEETTTEEEEEETTT--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCc-------cceEEec-CCCeEEEEECCCeEEEEECCc--
Confidence 67889977 5544 4566677888888776555432222 2355667 556655444456788889888
Q ss_pred CCceeEEecccccceeEEEEEe-cCCCEEEEEec----------------------CCcEEEEEeecCceeeeeecCCCC
Q psy6213 86 RSKQERVFNDHKRTVNKVSFHY-VESNWLISGSQ----------------------DGTMRLFDIRCQESTKIFHSNTES 142 (330)
Q Consensus 86 ~~~~~~~~~~~~~~i~~i~~~~-~~~~~l~~~~~----------------------d~~i~i~d~~~~~~~~~~~~~~~~ 142 (330)
.+....+...+.-+-...|.. .++..++-.-. ...|.-.|+.+++....+. ....
T Consensus 112 -~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~w 189 (386)
T PF14583_consen 112 -LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDW 189 (386)
T ss_dssp ---EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-
T ss_pred -CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCcc
Confidence 444444444555554456643 24444432211 1346666777777655555 5677
Q ss_pred eEEEEEcCCCCcEEEEEec---CC-cEEEEecCCCccceeeeccCC--CCeEEEEEcCCCCEEEEEe-----cCCcEEEE
Q psy6213 143 VRDVEFNPHSPYAFASVSE---NG-TIQQWDVRRPEKCFYQFTAHS--GPIFACDWHPEHAWLATAS-----RDKTIKVW 211 (330)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~---dg-~i~i~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-----~dg~i~i~ 211 (330)
+..+.|+|..+.+++-+-+ +. .-++|-+++.+.....+..+. ..+..=-|.|||..+.--+ .+..|.-+
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~ 269 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY 269 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence 8999999999876666543 22 237787776555444444332 2234445889998765433 23346777
Q ss_pred eCCCCccccceeccccceEEEEEcCCCCeEEEEeecccC----------------CeEEEEEccCCCccceEeecCC---
Q psy6213 212 DLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVD----------------SSVNVWDIRRPYIPLASFTEHK--- 272 (330)
Q Consensus 212 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~----------------~~i~i~d~~~~~~~~~~~~~~~--- 272 (330)
|+.+.+... ...........-++||+. +++-+ .| .-|++++++.+.. ..+..|.
T Consensus 270 d~~t~~~~~--~~~~p~~~H~~ss~Dg~L-~vGDG--~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~--~~l~~h~~sw 342 (386)
T PF14583_consen 270 DPDTGERRR--LMEMPWCSHFMSSPDGKL-FVGDG--GDAPVDVADAGGYKIENDPWIYLFDVEAGRF--RKLARHDTSW 342 (386)
T ss_dssp -TTT--EEE--EEEE-SEEEEEE-TTSSE-EEEEE---------------------EEEEEETTTTEE--EEEEE-----
T ss_pred CCCCCCceE--EEeCCceeeeEEcCCCCE-EEecC--CCCCccccccccceecCCcEEEEeccccCce--eeeeeccCcc
Confidence 887764322 122234556667889984 55544 22 2566777776542 2222222
Q ss_pred -------C-CeEEEEEecCCCEEEEe-ecCCeEeee
Q psy6213 273 -------D-VVSGLAWRGDPQLFIAS-SRVSIIPRA 299 (330)
Q Consensus 273 -------~-~v~~~~~~~~~~~l~s~-~~dg~i~iw 299 (330)
. .=....|+||++.++-. ...|...||
T Consensus 343 ~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 343 KVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred eeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 1 12457899999876654 556777666
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.8e-06 Score=69.32 Aligned_cols=265 Identities=9% Similarity=0.017 Sum_probs=143.9
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeecccc-ccc--cce-eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCce
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNI-NLN--FSC-NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQ 89 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~-~~~--~~v-~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 89 (330)
+++.++.+ ++.+.-+|.++|+..-.......... ... ..+ ..+.. .++.++.++.+|.+..+|.++ ++.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~t---G~~ 142 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAED---GEV 142 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCC---CCC
Confidence 44445555 88999999998886655444321000 000 000 01111 356677788899999999887 444
Q ss_pred eEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCe-----EEEEEcCCCCcEEEEEecCCc
Q psy6213 90 ERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESV-----RDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 90 ~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~dg~ 164 (330)
.-.............. .+..++.+..++.+..+|.++++.+-.+....... .+-... +. .++.++.+|.
T Consensus 143 ~W~~~~~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~ 216 (394)
T PRK11138 143 AWQTKVAGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGR 216 (394)
T ss_pred cccccCCCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCE
Confidence 4333322211111122 24567777888999999999999887765321110 011111 22 3666778899
Q ss_pred EEEEecCCCccceeeeccC-C---C---CeEEEEEcC--CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEc
Q psy6213 165 IQQWDVRRPEKCFYQFTAH-S---G---PIFACDWHP--EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWR 235 (330)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~-~---~---~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 235 (330)
+..+|..++. ..-..... . . ....+.-+| .+..++.++.+|.+..+|..+++..... ... ....+..
T Consensus 217 v~a~d~~~G~-~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~-~~~-~~~~~~~- 292 (394)
T PRK11138 217 VSAVLMEQGQ-LIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR-EYG-SVNDFAV- 292 (394)
T ss_pred EEEEEccCCh-hhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee-cCC-CccCcEE-
Confidence 9999988743 22222110 0 0 011111222 2456777788999999999988543322 111 1111222
Q ss_pred CCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.+..+++.. .+|.+..+|..+++..-...........+... .+..|+.++.||.|+..+.
T Consensus 293 -~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 293 -DGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR 352 (394)
T ss_pred -ECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence 344455555 49999999998886421111100111122222 2456777888898887764
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-05 Score=60.50 Aligned_cols=201 Identities=9% Similarity=0.131 Sum_probs=117.2
Q ss_pred EecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC-CCCeEEEEEcCCCCcEEEEEecCCcEEEEec
Q psy6213 92 VFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN-TESVRDVEFNPHSPYAFASVSENGTIQQWDV 170 (330)
Q Consensus 92 ~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~ 170 (330)
.+.+-...+..++|.|+++.++++....+.|..++.+ ++.++.+.-. .+..-.+++..++. ++++.-.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~-~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGR-YVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTE-EEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCE-EEEEEcCCCcEEEEEE
Confidence 4555666799999999667778888888889888864 7777776543 35688899987775 3444445889999988
Q ss_pred CCCccce-----eee-----ccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCC---Cccccc--------eeccccce
Q psy6213 171 RRPEKCF-----YQF-----TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI---KPSLEY--------SINTIASV 229 (330)
Q Consensus 171 ~~~~~~~-----~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~--------~~~~~~~v 229 (330)
......+ ..+ ..++..+-.++|+|.++.|+.+-...-..+|.++. ...... .......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 4322111 111 12445688999999888888888777777887765 111110 11123458
Q ss_pred EEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCC---------CCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK---------DVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
..++++|....+++.+. .+..|..+|.. ++. +..+.-.. ....+|+|.++|++.+ .++-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~--es~~l~~~d~~-G~~-~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSD--ESRLLLELDRQ-GRV-VSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEET--TTTEEEEE-TT---E-EEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred cceEEcCCCCeEEEEEC--CCCeEEEECCC-CCE-EEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 89999998777777776 68899999944 432 33332111 3578999999986554 4566666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-06 Score=73.98 Aligned_cols=194 Identities=15% Similarity=0.172 Sum_probs=118.4
Q ss_pred EecccccceeEEEEEecCCCEEEEEe-c--C-CcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc--E
Q psy6213 92 VFNDHKRTVNKVSFHYVESNWLISGS-Q--D-GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT--I 165 (330)
Q Consensus 92 ~~~~~~~~i~~i~~~~~~~~~l~~~~-~--d-~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~--i 165 (330)
.+......+..-+|+| ++..++... . . ..++++|+++++...... ..+.-..-+|+|+|+.++++...||. |
T Consensus 187 ~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 187 KLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred EecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 3334445667778888 555544331 1 2 359999999887766554 33444567899999988888888887 5
Q ss_pred EEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe-cCCc--EEEEeCCCCccccceeccccceEEEEEcCCCCeEE
Q psy6213 166 QQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS-RDKT--IKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHL 242 (330)
Q Consensus 166 ~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 242 (330)
+++|+.... ...+....+.-..-.|+|||+.++-.+ ..|. |.++|....... ........-..-.|+|||++++
T Consensus 265 y~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 265 YLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred EEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCcCccCCCCCCEEE
Confidence 555666532 333444444445778999999887665 4444 666676666432 2222222223788999999877
Q ss_pred EEeecccCCe--EEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 243 ASCSLVVDSS--VNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 243 ~~~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
.... .+|. |.+.|+.++.. ...+. +......-.|.|++..+...+..+
T Consensus 342 ~~~~--~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 342 FESS--SGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EEec--cCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 6664 3455 66666665553 22222 223344556777777666554433
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-06 Score=72.73 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=113.8
Q ss_pred eeeeeecccCCcEEEEEc---CC-CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCc--EEEEEe
Q psy6213 54 CNDVAWSCIEENHIATGA---TN-GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGT--MRLFDI 127 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~---~d-g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~--i~i~d~ 127 (330)
+..-+|+| ++..++... .. ..+.++++++... ..+..+. +.-..-+|+|++..++++...||. |+++|+
T Consensus 195 ~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~-~~i~~~~---g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 195 ILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKR-PVILNFN---GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred eeccccCc-CCCceEEEEEecCCCceEEEEeccCCcc-ceeeccC---CccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 46678998 666554432 22 3588999988332 2222233 334456899944445556666665 666677
Q ss_pred ecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC-C
Q psy6213 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD-K 206 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g 206 (330)
.+++..+ +....+.-..=.|+|+|++++++.+..|.-.||-....+.....+....+.-..-.|+|||++++..+.. |
T Consensus 270 ~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g 348 (425)
T COG0823 270 DGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGG 348 (425)
T ss_pred CCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence 7666333 4433343446689999999888888888755554443333334444333333378899999998887743 4
Q ss_pred c--EEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEee
Q psy6213 207 T--IKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCS 246 (330)
Q Consensus 207 ~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 246 (330)
. |.+.|+.+... ............-.|.|++..++...+
T Consensus 349 ~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 349 QWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 4 66666666543 333334444556678889988766665
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=6e-06 Score=71.54 Aligned_cols=171 Identities=9% Similarity=0.079 Sum_probs=101.5
Q ss_pred CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC----CcEEEEEeecCceeeeeecCCCCeEEEEEc
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD----GTMRLFDIRCQESTKIFHSNTESVRDVEFN 149 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 149 (330)
+.+.+.|.++ .+...++.. .+....+.++| ++.++++.+.+ .++...+..+......+.... + -++.
T Consensus 215 ~~vSvID~et---meV~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~v 285 (635)
T PRK02888 215 SLFTAVDAET---MEVAWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAV 285 (635)
T ss_pred EEEEEEECcc---ceEEEEEEe-CCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhh
Confidence 4455666655 333333322 22445667787 77777766532 223333322222111111100 0 1334
Q ss_pred CCCCcEEEEEecCCcEEEEecCC----CccceeeeccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCcc------
Q psy6213 150 PHSPYAFASVSENGTIQQWDVRR----PEKCFYQFTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPS------ 218 (330)
Q Consensus 150 ~~~~~~~~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------ 218 (330)
++|++.++ .++.|.+.|.++ .......+. -......+.++|||+++++++ .+.++.|+|+.+.+.
T Consensus 286 kdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 286 KAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hCCCEEEE---CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 57775443 357899999987 233334343 456678999999999887666 588999999988643
Q ss_pred -----ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 219 -----LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 219 -----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
+.............+|.++|. .+++.. .|..|..||+..
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~-aytslf--~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLF--LDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCC-EEEeEe--ecceeEEEehHH
Confidence 112222234556788999987 477776 799999999875
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.9e-09 Score=87.89 Aligned_cols=202 Identities=20% Similarity=0.388 Sum_probs=127.2
Q ss_pred cceEEEEeeCCCe--eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC----CCcEE
Q psy6213 6 PVHKHGLKADNGL--AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT----NGAVV 77 (330)
Q Consensus 6 ~v~~~~~s~~~~~--~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~ 77 (330)
-+.|+++.-+.+. ++.| +|.|.+-........ ....+......|++++|++-+.+.||+|-. |..+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-----cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 3567776655553 7777 999998887654322 111222334457999999977788888743 45699
Q ss_pred EEECCCCC-CCceeEEecc-cccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcE
Q psy6213 78 VWNLGQIS-RSKQERVFND-HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 78 iw~~~~~~-~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
|||+.+.- .++....+.. ......+++|.. +.+++.+|.....+.++|++... .....-.+..+..+...|-....
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNY 210 (783)
T ss_pred ceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCc
Confidence 99997631 1111111222 334556888984 88889999988899999998322 11111234456777888833332
Q ss_pred EEEEecCCcEEEEe-cCCCccceeeeccCC----CCeEEEEEcCCC-CEEEEEe-cCCcEEEEeCCC
Q psy6213 156 FASVSENGTIQQWD-VRRPEKCFYQFTAHS----GPIFACDWHPEH-AWLATAS-RDKTIKVWDLSI 215 (330)
Q Consensus 156 ~~~~~~dg~i~i~d-~~~~~~~~~~~~~~~----~~i~~~~~~~~~-~~l~~~~-~dg~i~i~d~~~ 215 (330)
+ +...||.|.+|| .++-+.++..+...+ ..+..++|+|.. .++++.. ..++|+.||+..
T Consensus 211 ~-cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 F-CSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred e-eccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 4 445599999999 554444444443333 348999999943 2344444 557899999853
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.2e-05 Score=59.86 Aligned_cols=249 Identities=13% Similarity=0.111 Sum_probs=142.0
Q ss_pred eEEEEeeCCCeee-c---------C--CCeEEEEEcCCcceeeeeceeec-cccccccceeeeeecccCCcEEEEEcC--
Q psy6213 8 HKHGLKADNGLAQ-P---------S--RNVFKIFLIKDTEFVETHNLRVG-KNINLNFSCNDVAWSCIEENHIATGAT-- 72 (330)
Q Consensus 8 ~~~~~s~~~~~~~-~---------g--d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 72 (330)
-.+..+||++.+. + | ...|.+||..+-.......++.. ......+ ...++++. +++++++...
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~-~~~~~ls~-dgk~~~V~N~TP 116 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY-KNMFALSA-DGKFLYVQNFTP 116 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS---GGGEEE-T-TSSEEEEEEESS
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccc-ccceEEcc-CCcEEEEEccCC
Confidence 3467899999833 2 2 45799999999877776666654 2222222 25667777 7777766533
Q ss_pred CCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee-cCceeee----eecCCCCe-EEE
Q psy6213 73 NGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR-CQESTKI----FHSNTESV-RDV 146 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~----~~~~~~~v-~~~ 146 (330)
.-.|.|-|+.. .+....+.- ..+. ...|..++-|.+-|.||.+.-..+. .|+.... +.....++ ..-
T Consensus 117 a~SVtVVDl~~---~kvv~ei~~--PGC~--~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~ 189 (342)
T PF06433_consen 117 ATSVTVVDLAA---KKVVGEIDT--PGCW--LIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHP 189 (342)
T ss_dssp SEEEEEEETTT---TEEEEEEEG--TSEE--EEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--
T ss_pred CCeEEEEECCC---CceeeeecC--CCEE--EEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccccc
Confidence 35688888877 555544431 1222 2234355668888899999999887 4544322 11222222 233
Q ss_pred EEcCCCCcEEEEEecCCcEEEEecCCCccc-eeeecc----------CCCCeEEEEEcCCCCEEEEEecC---C------
Q psy6213 147 EFNPHSPYAFASVSENGTIQQWDVRRPEKC-FYQFTA----------HSGPIFACDWHPEHAWLATASRD---K------ 206 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~-~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~d---g------ 206 (330)
++...+.. ++-.+.+|.|+-.|+...... ...+.. ..+.-.-+++++..+.|.+.-.. +
T Consensus 190 ~~~~~~~~-~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpg 268 (342)
T PF06433_consen 190 AYSRDGGR-LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPG 268 (342)
T ss_dssp EEETTTTE-EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-E
T ss_pred ceECCCCe-EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCc
Confidence 44444443 455678899999888753311 111110 12334557888766555543321 1
Q ss_pred -cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee
Q psy6213 207 -TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT 269 (330)
Q Consensus 207 -~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 269 (330)
.|.++|+.+.+.+. ......++.++..+.+.+-++.+.+. .++.+.+||..+++. +..+.
T Consensus 269 teVWv~D~~t~krv~-Ri~l~~~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~-~~~~~ 329 (342)
T PF06433_consen 269 TEVWVYDLKTHKRVA-RIPLEHPIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKL-VRSIE 329 (342)
T ss_dssp EEEEEEETTTTEEEE-EEEEEEEESEEEEESSSS-EEEEEET-TTTEEEEEETTT--E-EEEE-
T ss_pred eEEEEEECCCCeEEE-EEeCCCccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcE-Eeehh
Confidence 27888888885443 33445678899999987755544321 479999999999976 55554
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-05 Score=65.51 Aligned_cols=217 Identities=9% Similarity=0.080 Sum_probs=120.8
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEE-Eeec
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF-DIRC 129 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~-d~~~ 129 (330)
......+.++| +++.+++ +.||...++.... .+.. ..+.....+|.+ .+.+|+-...++|.++ +++
T Consensus 32 ~~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~---~r~k-----~~G~g~~~vw~~--~n~yAv~~~~~~I~I~kn~~- 98 (443)
T PF04053_consen 32 EIYPQSLSHNP-NGRFVLV-CGDGEYEIYTALA---WRNK-----AFGSGLSFVWSS--RNRYAVLESSSTIKIYKNFK- 98 (443)
T ss_dssp SS--SEEEE-T-TSSEEEE-EETTEEEEEETTT---TEEE-----EEEE-SEEEE-T--SSEEEEE-TTS-EEEEETTE-
T ss_pred CcCCeeEEECC-CCCEEEE-EcCCEEEEEEccC---Cccc-----ccCceeEEEEec--CccEEEEECCCeEEEEEcCc-
Confidence 33358999999 9998888 4578888887433 2221 125566788985 5557777778899996 333
Q ss_pred CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 130 QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 130 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
.+....++.. ..+..+-. |. +|...+ ++.|.+||..+ ++.+..+... +|..+.|+++|.+++..+.+ .+.
T Consensus 99 ~~~~k~i~~~-~~~~~If~---G~-LL~~~~-~~~i~~yDw~~-~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 99 NEVVKSIKLP-FSVEKIFG---GN-LLGVKS-SDFICFYDWET-GKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIY 168 (443)
T ss_dssp E-TT-----S-S-EEEEE----SS-SEEEEE-TTEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred cccceEEcCC-cccceEEc---Cc-EEEEEC-CCCEEEEEhhH-cceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEE
Confidence 2222233321 22343432 65 455554 44899999998 6667776633 38999999999999998865 677
Q ss_pred EEeCCCC----------ccccceecc-ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEE
Q psy6213 210 VWDLSIK----------PSLEYSINT-IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGL 278 (330)
Q Consensus 210 i~d~~~~----------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~ 278 (330)
+++.... +........ ...|.+.+|..+ .++.+. .+.|+- +..+. ...+..-..++.=+
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT----~~~lkY--l~~Ge--~~~i~~ld~~~yll 238 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT----SNHLKY--LVNGE--TGIIAHLDKPLYLL 238 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-----TTEEEE--EETTE--EEEEEE-SS--EEE
T ss_pred EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc----CCeEEE--EEcCC--cceEEEcCCceEEE
Confidence 7765432 012222233 578889999887 344444 336766 55554 23333335677778
Q ss_pred EEecCCCEEEEeecCCeEeeee
Q psy6213 279 AWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 279 ~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
.+.|+.+.+.....|+.+..+.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ 260 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYE 260 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE
T ss_pred EEEccCCEEEEEECCCCEEEEE
Confidence 8888888999999999998886
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.7e-06 Score=70.57 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=114.5
Q ss_pred CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe--cC-CcEEEEecCCCccceeeeccCCCCeEEEEEcCC
Q psy6213 119 DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS--EN-GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE 195 (330)
Q Consensus 119 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 195 (330)
.+.+.+.|.++.+...++.... ....++++|+++++++++. +. .++..-+... ......+... .+ -++.++
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e-~d~~vvfni~--~i--ea~vkd 287 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE-RDWVVVFNIA--RI--EEAVKA 287 (635)
T ss_pred eEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeecccc-CceEEEEchH--HH--HHhhhC
Confidence 4567777877777666665433 4567889999997555542 22 2333333322 1111111100 00 133457
Q ss_pred CCEEEEEecCCcEEEEeCCC----CccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc--------
Q psy6213 196 HAWLATASRDKTIKVWDLSI----KPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI-------- 263 (330)
Q Consensus 196 ~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~-------- 263 (330)
|++... .++.|.+.|.++ ................+.++|||+++++++. .++++.++|+.+.+.
T Consensus 288 GK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 288 GKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhhhccCCc
Confidence 776665 357899999988 4456677777888999999999999888887 899999999987542
Q ss_pred ---cceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 264 ---PLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 264 ---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
......- .......+|+++|+...|.--|..|-.|+..+
T Consensus 364 ~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 RDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1222222 23445678999999888889999999998543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.2e-05 Score=63.54 Aligned_cols=238 Identities=13% Similarity=0.059 Sum_probs=127.9
Q ss_pred ccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeecc----c------cccccceeeeeecccCCcEEEEEcCC
Q psy6213 5 SPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGK----N------INLNFSCNDVAWSCIEENHIATGATN 73 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~----~------~~~~~~v~~~~~~~~~~~~l~~~~~d 73 (330)
..+....|||+|+.++.. ++.|.+++..+++..+...-.... . ..+-..-.++-||| ++++||....|
T Consensus 43 ~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEEC
Confidence 467889999999998888 999999998877443322211000 0 00001126788999 88888876443
Q ss_pred -CcEE-----------------------------------EEECCCCCCCceeEEe---cccccceeEEEEEecCCCEEE
Q psy6213 74 -GAVV-----------------------------------VWNLGQISRSKQERVF---NDHKRTVNKVSFHYVESNWLI 114 (330)
Q Consensus 74 -g~i~-----------------------------------iw~~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~ 114 (330)
..|. ++++.+.+. ..+... ......+..+.|.+ ++..|+
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~-~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~ 199 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKT-TELDPPNSLNPQDYYLTRVGWSP-DGKRLW 199 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCC-CEE---HHHHTSSEEEEEEEEEE-TTEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcE-EEeeeccccCCCccCcccceecC-CCcEEE
Confidence 2222 233322110 011111 12234577888987 666343
Q ss_pred EE--ecC---CcEEEEEeecCceeeeeec-CCCCe---EEEEEc-CCCCcEEEEEecCCcEEEEecCCCccceeeeccCC
Q psy6213 115 SG--SQD---GTMRLFDIRCQESTKIFHS-NTESV---RDVEFN-PHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHS 184 (330)
Q Consensus 115 ~~--~~d---~~i~i~d~~~~~~~~~~~~-~~~~v---~~~~~~-~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 184 (330)
.. ..+ ..+.+.|..+++.....+. ....+ ....+. +++..++.....+|--++|-+...+.....+....
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~ 279 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD 279 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc
Confidence 33 222 2466777776655433322 22222 355554 77776677777888755555444344455666556
Q ss_pred CCeEE-EEEcCCCCEEE-EEecC----CcEEEEeCC-CCccccceeccccceEEEEEcCCCCeEEEEee
Q psy6213 185 GPIFA-CDWHPEHAWLA-TASRD----KTIKVWDLS-IKPSLEYSINTIASVSRIKWRPQRKFHLASCS 246 (330)
Q Consensus 185 ~~i~~-~~~~~~~~~l~-~~~~d----g~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 246 (330)
-.|.. +.++++++.+. ++..+ ..+..-++. .+ ...........-..+.|||++++++..++
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~-~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG-EPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT-EEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC-CeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 66755 67788766554 45442 245555666 33 22222222222269999999999888886
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-06 Score=73.24 Aligned_cols=154 Identities=9% Similarity=0.171 Sum_probs=106.7
Q ss_pred CCcccceEEEEeeC-------------CCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc----
Q psy6213 2 AYLSPVHKHGLKAD-------------NGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI---- 62 (330)
Q Consensus 2 ~H~~~v~~~~~s~~-------------~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---- 62 (330)
+|.+.|.-..+.-+ |.+ ++|+ ||+|.|-.+.+.+....+.++. ++.+++++|+
T Consensus 56 tH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~r--------piksial~Pd~~~~ 127 (846)
T KOG2066|consen 56 THRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKR--------PIKSIALHPDFSRQ 127 (846)
T ss_pred cccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecCC--------cceeEEeccchhhh
Confidence 36666666655544 888 5666 9999999998877655444432 2588999982
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCC
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES 142 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 142 (330)
..+.+++|+..| +.++.-.-.+.... ..+....++|.+++|. ++++|-++.+| |++||..+++.+..++.....
T Consensus 128 ~sk~fv~GG~ag-lvL~er~wlgnk~~-v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~ 201 (846)
T KOG2066|consen 128 QSKQFVSGGMAG-LVLSERNWLGNKDS-VVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQS 201 (846)
T ss_pred hhhheeecCcce-EEEehhhhhcCccc-eeeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCC
Confidence 256899999888 77776432211222 2456677999999996 78999988776 999999988877766543322
Q ss_pred ------eEEEEEcCCCCcEEEEEecCCcEEEEecCC
Q psy6213 143 ------VRDVEFNPHSPYAFASVSENGTIQQWDVRR 172 (330)
Q Consensus 143 ------v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 172 (330)
...+.|.++.. ++.| ...+|++..++.
T Consensus 202 ~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCcccCCCceEecCCCe--EEEe-cCCeEEEEEEec
Confidence 34677887775 4444 344788888873
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-05 Score=66.19 Aligned_cols=234 Identities=13% Similarity=0.182 Sum_probs=127.9
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCc----------------------------------------eeEE
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSK----------------------------------------QERV 92 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----------------------------------------~~~~ 92 (330)
.|+.+.|.+ +...|++|...|.|.+|......... +...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 368899998 88889999999999998764321110 1112
Q ss_pred ecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee--c------CCCCeEEEEEcC-----CC--CcEEE
Q psy6213 93 FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH--S------NTESVRDVEFNP-----HS--PYAFA 157 (330)
Q Consensus 93 ~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~--~~~~~ 157 (330)
+....++|++++.+ +=.+++.|..+|.+.+.|++....+..-. . ....++++.|.- |+ .-+++
T Consensus 82 ~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 23345789999987 67899999999999999998776654421 1 234678888762 11 12688
Q ss_pred EEecCCcEEEEecCC--Cccce----eeeccCCCCeEEEE-EcCC-----------------C---CEEEEEecCCcEEE
Q psy6213 158 SVSENGTIQQWDVRR--PEKCF----YQFTAHSGPIFACD-WHPE-----------------H---AWLATASRDKTIKV 210 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~--~~~~~----~~~~~~~~~i~~~~-~~~~-----------------~---~~l~~~~~dg~i~i 210 (330)
+|...|.+.+|.+.- ++.-. .....+.++|..+. ++.+ | .-++....+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 899999999998752 11111 11123556655554 3221 0 12344445678999
Q ss_pred EeCCCCccccceeccccceEEEEEc-----CCCCeEEEEeecccCCeEEEEEccCCCccceEeecCC----CCeEEEEEe
Q psy6213 211 WDLSIKPSLEYSINTIASVSRIKWR-----PQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK----DVVSGLAWR 281 (330)
Q Consensus 211 ~d~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~ 281 (330)
+...+.+..............+.+- ..+.. +++-. .+|.+++|.+..-+. +.....+. ..+....++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~-Lv~l~--~~G~i~i~SLP~Lke-i~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYC-LVCLF--NNGSIRIYSLPSLKE-IKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEE-EEEEE--TTSEEEEEETTT--E-EEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceE-EEEEE--CCCcEEEEECCCchH-hhcccCCCccccccccccEEC
Confidence 9988775544444332333444453 23444 44444 599999999988765 44444322 234566778
Q ss_pred cCCCEEEEeecC
Q psy6213 282 GDPQLFIASSRV 293 (330)
Q Consensus 282 ~~~~~l~s~~~d 293 (330)
++|..++-.+..
T Consensus 316 ~~Gdi~~~~gps 327 (395)
T PF08596_consen 316 RNGDIFYWTGPS 327 (395)
T ss_dssp TTS-EEEE-SSS
T ss_pred CCCCEEEEeCcc
Confidence 889877766554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00024 Score=60.52 Aligned_cols=195 Identities=13% Similarity=0.124 Sum_probs=103.6
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee-------ecCCCCeEEEE
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF-------HSNTESVRDVE 147 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~v~~~~ 147 (330)
.|.+|+... +.+..+.-..+.+.++.|.. ...|++-..||.+++||+. |+....+ ......+....
T Consensus 62 ~I~iys~sG----~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSG----KLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCC----CEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccc
Confidence 488888764 45555444448999999984 5566677789999999986 3331111 11111122223
Q ss_pred EcCCCCcEEEEEecCCcEEEEecCCCccceeeec---c-------CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCc
Q psy6213 148 FNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT---A-------HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKP 217 (330)
Q Consensus 148 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~---~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 217 (330)
+..+| ++.-..++.+.+.+--........+. . +........++.+....+....++.+.+.+-....
T Consensus 135 ~~~~G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 135 FYKNG---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred cCCCC---EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc
Confidence 33344 33333455555443222110111111 0 00000012344455555555555666654433321
Q ss_pred cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC-CCCeEEEEEecCCCEE
Q psy6213 218 SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH-KDVVSGLAWRGDPQLF 287 (330)
Q Consensus 218 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 287 (330)
. ....+++..++.||++++ +|... .+|.+.+....-.+. ...+... ......|.|.-+...+
T Consensus 212 ~----i~~~~~i~~iavSpng~~-iAl~t--~~g~l~v~ssDf~~~-~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 212 Q----IDSDGPIIKIAVSPNGKF-IALFT--DSGNLWVVSSDFSEK-LCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred c----ccCCCCeEEEEECCCCCE-EEEEE--CCCCEEEEECcccce-eEEeecCcCCCCcEEEEECCCcEE
Confidence 1 334578999999999997 55555 589998887654433 3344332 3466777787654433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00039 Score=58.79 Aligned_cols=260 Identities=10% Similarity=0.077 Sum_probs=159.9
Q ss_pred EEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-CCcEEEEECCCCCCCceeEEecccccceeEEE
Q psy6213 26 FKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-NGAVVVWNLGQISRSKQERVFNDHKRTVNKVS 104 (330)
Q Consensus 26 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~ 104 (330)
+.+++..+........... ....+...| .+..+..... ...+...+... .........-...-..+.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~--------~~~~v~~~~-~g~~~~v~~~~~~~~~~~~~~~---n~~~~~~~~g~~~p~~i~ 80 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR--------GPGGVAVNP-DGTQVYVANSGSNDVSVIDATS---NTVTQSLSVGGVYPAGVA 80 (381)
T ss_pred eEEEeecccEEEEEeecCC--------CCceeEEcC-ccCEEEEEeecCceeeeccccc---ceeeeeccCCCcccccee
Confidence 5666666555444433332 125677777 6644444332 22344443331 111111111113345677
Q ss_pred EEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe--cCCcEEEEecCCCccceeeecc
Q psy6213 105 FHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS--ENGTIQQWDVRRPEKCFYQFTA 182 (330)
Q Consensus 105 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~ 182 (330)
.++...+.++....++.|.+.|..+.+......... ....++++|+++++.++-. .++.+.+.|..+ .........
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~v 158 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIPV 158 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEec
Confidence 777444466666667899999987777666665333 6778999999987666665 468899999887 444444443
Q ss_pred CCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCccccc----eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEE
Q psy6213 183 HSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPSLEY----SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257 (330)
Q Consensus 183 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d 257 (330)
-..+ ..+++.|+|+.++... .++.+.+.|......... ..........+.++|+|.++.+....+.++.+...|
T Consensus 159 G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id 237 (381)
T COG3391 159 GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID 237 (381)
T ss_pred CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence 3334 8999999999665555 788999999776633321 123345667899999999877777622236899999
Q ss_pred ccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC-CeEeeee
Q psy6213 258 IRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV-SIIPRAK 300 (330)
Q Consensus 258 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~iw~ 300 (330)
..++................+..+|+|..+...... +.+.+-+
T Consensus 238 ~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 238 TATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred CCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 888764221122111145678899999988887444 5666544
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00024 Score=55.51 Aligned_cols=195 Identities=6% Similarity=0.109 Sum_probs=109.1
Q ss_pred ccceEEEEeeCCCe-eec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 5 SPVHKHGLKADNGL-AQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 5 ~~v~~~~~s~~~~~-~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
..+..++|+|+... ++. . .+.|..++.+ |+..+.+.+..... .-.+++.. ++.++++.-.++.+.++++
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D------~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGD------YEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SS------EEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCC------ceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 35899999998665 444 4 8888888864 67777766554221 36788875 6666666556889999988
Q ss_pred CCCCCCc---eeEEec-----ccccceeEEEEEecCCCEEEEEecCCcEEEEEeec---Cceeeee--------ecCCCC
Q psy6213 82 GQISRSK---QERVFN-----DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC---QESTKIF--------HSNTES 142 (330)
Q Consensus 82 ~~~~~~~---~~~~~~-----~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~--------~~~~~~ 142 (330)
....... ....+. .+...+..++|.| .++.|+.+-...-..+|.++. ....... ......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 4422111 111111 2446689999998 556666667776777777764 2111111 113345
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCC---------CCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHS---------GPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
+.+++++|...++++.+..+..|..+|.. ++++..+.-.. ...-.|+|.++|++.+++ .-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 78999999988888888889999999954 44433332111 356789999998755554 44444443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00017 Score=59.64 Aligned_cols=182 Identities=9% Similarity=0.127 Sum_probs=111.0
Q ss_pred CeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc---CCcEEEEEcC----------CCcEEEEECCCC-CCCce
Q psy6213 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI---EENHIATGAT----------NGAVVVWNLGQI-SRSKQ 89 (330)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~----------dg~i~iw~~~~~-~~~~~ 89 (330)
..|++.|..+.+....+.+...+.. ..+..+.+... ...++++|+. .|.|.++++... .....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~---~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~ 78 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHV---TSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK 78 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEE---EEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E
T ss_pred cEEEEEeCCCCeEEEEEECCCCceE---EEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE
Confidence 4688999988887777777654432 11233334321 2577887754 288999999872 11112
Q ss_pred eEEe--cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc-eeeeeec-CCCCeEEEEEcCCCCcEEEEEecCCcE
Q psy6213 90 ERVF--NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE-STKIFHS-NTESVRDVEFNPHSPYAFASVSENGTI 165 (330)
Q Consensus 90 ~~~~--~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~dg~i 165 (330)
+..+ ...+++|++++-. ++. |+++. .+.|.+|++...+ ....-.. ....+.++... ++ .++.|..-..+
T Consensus 79 l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv 151 (321)
T PF03178_consen 79 LKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KN-YILVGDAMKSV 151 (321)
T ss_dssp EEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TT-EEEEEESSSSE
T ss_pred EEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--cc-EEEEEEcccCE
Confidence 2222 2456889988866 444 44444 4789999999887 3332221 22356666655 44 58888888888
Q ss_pred EEEecCCCccceeeec--cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCC
Q psy6213 166 QQWDVRRPEKCFYQFT--AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215 (330)
Q Consensus 166 ~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 215 (330)
.++..+.....+..+. .....++++.+-++++.++.+..+|.+.++....
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 8876554233232222 2345688888886667999999999999998763
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00056 Score=58.87 Aligned_cols=242 Identities=17% Similarity=0.225 Sum_probs=130.1
Q ss_pred ceEEEEeeCCCeeecC---C----CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC------
Q psy6213 7 VHKHGLKADNGLAQPS---R----NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN------ 73 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g---d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------ 73 (330)
+...++||||++++.+ . ..++++|+++++..... +.... -..+.|.+ +++.|+....+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~-------~~~~~W~~-d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPK-------FSSVSWSD-DGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEE-------SEEEEECT-TSSEEEEEECSTTTSS-
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccc-------cceEEEeC-CCCEEEEEEeCcccccc
Confidence 4467899999995443 3 35999999998665421 11111 13499999 65555444322
Q ss_pred -----CcEEEEECCCCCCCceeEEecccccc--eeEEEEEecCCCEEEEEecC----CcEEEEEeecC----ceeeeeec
Q psy6213 74 -----GAVVVWNLGQISRSKQERVFNDHKRT--VNKVSFHYVESNWLISGSQD----GTMRLFDIRCQ----ESTKIFHS 138 (330)
Q Consensus 74 -----g~i~iw~~~~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~l~~~~~d----~~i~i~d~~~~----~~~~~~~~ 138 (330)
..|..|.+.+.. ..-...+...... ...+..++ ++++++..... ..+.+.|+..+ .....+..
T Consensus 197 ~~~~~~~v~~~~~gt~~-~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQ-SEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp CCGCCEEEEEEETTS-G-GG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred cCCCCcEEEEEECCCCh-HhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 237788887632 1212344443333 56777886 77776654332 34777787764 22333333
Q ss_pred CCCCeE-EEEEcCCCCcEEEEEe---cCCcEEEEecCCCcc--ceeeeccCCCC--eEEEEEcCCCCEEEE-EecCC--c
Q psy6213 139 NTESVR-DVEFNPHSPYAFASVS---ENGTIQQWDVRRPEK--CFYQFTAHSGP--IFACDWHPEHAWLAT-ASRDK--T 207 (330)
Q Consensus 139 ~~~~v~-~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~l~~-~~~dg--~ 207 (330)
....+. .+... .+. +++... .++.|...++..... ....+..+... +..+.. .+.+|+. ...++ .
T Consensus 275 ~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 275 REDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSR 350 (414)
T ss_dssp SSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEE
T ss_pred CCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccE
Confidence 333343 34333 343 444432 345677778776442 12244445553 444444 3444444 44444 4
Q ss_pred EEEEeCC-CCccccceeccccceEEEEEcCCCCeEEEEee-cccCCeEEEEEccCCCc
Q psy6213 208 IKVWDLS-IKPSLEYSINTIASVSRIKWRPQRKFHLASCS-LVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 208 i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~i~i~d~~~~~~ 263 (330)
|+++++. ............+.+..+...+++..+....+ ...-+++.-||+.+++.
T Consensus 351 l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 351 LRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 8889998 54344444444556677777777776555544 12346888889888864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00025 Score=64.09 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=100.7
Q ss_pred CCcEEEEE-cCCCcEEEEECCCCCCCceeEEecccccc-eeEEEEEe----cCCCEEEEEecCCcEEEEEeecCc--eee
Q psy6213 63 EENHIATG-ATNGAVVVWNLGQISRSKQERVFNDHKRT-VNKVSFHY----VESNWLISGSQDGTMRLFDIRCQE--STK 134 (330)
Q Consensus 63 ~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-i~~i~~~~----~~~~~l~~~~~d~~i~i~d~~~~~--~~~ 134 (330)
+.++|+.- .....|+-.|++. ++.+..+..+... |..++-.. ......+.|-.+..+..||.+-.. .+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~---GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLER---GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCC---CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 45555544 3456788889888 8888888877644 55554321 123445677778899999998532 221
Q ss_pred ----eeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 135 ----IFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 135 ----~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
.+ .......|++-+.+|. +|+|+.+|.||+||-- +.+....+++-..+|..|..+.||+++++.+. ..+.+
T Consensus 569 ~~~k~Y-~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlL 643 (794)
T PF08553_consen 569 SQSKQY-SSKNNFSCFATTEDGY--IAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLL 643 (794)
T ss_pred cccccc-ccCCCceEEEecCCce--EEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEE
Confidence 12 1345688888888884 9999999999999943 34445566677899999999999999887765 46777
Q ss_pred EeC
Q psy6213 211 WDL 213 (330)
Q Consensus 211 ~d~ 213 (330)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.6e-05 Score=64.92 Aligned_cols=218 Identities=12% Similarity=0.113 Sum_probs=108.2
Q ss_pred cceEEEEeeCCCe-eecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 6 PVHKHGLKADNGL-AQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 6 ~v~~~~~s~~~~~-~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
....+.++|+|++ +++|+|...|+......... . +. ....+|.+ .+.+|+-...+.|.++.--+
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~--~---G~-------g~~~vw~~--~n~yAv~~~~~~I~I~kn~~- 98 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA--F---GS-------GLSFVWSS--RNRYAVLESSSTIKIYKNFK- 98 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE--E---EE--------SEEEE-T--SSEEEEE-TTS-EEEEETTE-
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc--c---Cc-------eeEEEEec--CccEEEEECCCeEEEEEcCc-
Confidence 3678999999999 55559999999843322111 1 11 26788987 44466666688899964222
Q ss_pred CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 85 SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
......+.. ...+..+- .|.+|...+. +.|.+||..+++.+..+... +|..+.|++++++ ++..+. ..
T Consensus 99 --~~~~k~i~~-~~~~~~If----~G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~-val~t~-~~ 166 (443)
T PF04053_consen 99 --NEVVKSIKL-PFSVEKIF----GGNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL-VALVTK-DS 166 (443)
T ss_dssp --E-TT------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSE-EEEE-S--S
T ss_pred --cccceEEcC-CcccceEE----cCcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCE-EEEEeC-Ce
Confidence 122112221 11233333 2677777664 48999999999999988743 3899999999984 555554 46
Q ss_pred EEEEecCCC----------ccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEE
Q psy6213 165 IQQWDVRRP----------EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKW 234 (330)
Q Consensus 165 i~i~d~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 234 (330)
+.+++.+.. ......+..-...|.+..|..+ .++-.+.. .++. +..+ ..........++.-+.+
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~G-e~~~i~~ld~~~yllgy 240 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNG-ETGIIAHLDKPLYLLGY 240 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETT-EEEEEEE-SS--EEEEE
T ss_pred EEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcC-CcceEEEcCCceEEEEE
Confidence 777765531 0023333322567888888755 44444443 5655 3333 22222222345555555
Q ss_pred cCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
.|....++..- .++.+..+.+.
T Consensus 241 ~~~~~~ly~~D---r~~~v~~~~ld 262 (443)
T PF04053_consen 241 LPKENRLYLID---RDGNVISYELD 262 (443)
T ss_dssp ETTTTEEEEE----TT--EEEEE--
T ss_pred EccCCEEEEEE---CCCCEEEEEEC
Confidence 55444433332 36666665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00029 Score=59.56 Aligned_cols=217 Identities=11% Similarity=0.073 Sum_probs=143.6
Q ss_pred eeeeecccCCc-EEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec---CCcEEEEEeecC
Q psy6213 55 NDVAWSCIEEN-HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ---DGTMRLFDIRCQ 130 (330)
Q Consensus 55 ~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---d~~i~i~d~~~~ 130 (330)
..++.++ .+. ..+....++.|.+.|... .+....... ......++++| +++.+.++.. ++++.+.|..+.
T Consensus 77 ~~i~v~~-~~~~vyv~~~~~~~v~vid~~~---~~~~~~~~v-G~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 77 AGVAVNP-AGNKVYVTTGDSNTVSVIDTAT---NTVLGSIPV-GLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred cceeeCC-CCCeEEEecCCCCeEEEEcCcc---cceeeEeee-ccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCC
Confidence 6778888 555 555555568899999766 333333322 22667889998 5555554443 689999999988
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee-e---eccCCCCeEEEEEcCCCCEEEEEecC-
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY-Q---FTAHSGPIFACDWHPEHAWLATASRD- 205 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~~~~~d- 205 (330)
+..........+ ..++++|+++.++++-..++.|.+.|.... .... . ...-......+.++|+|+.+......
T Consensus 151 ~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 151 KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 888775544445 899999999976666668999999997752 2221 0 11122345678999999976665544
Q ss_pred --CcEEEEeCCCCccccceecccc-ceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCC---CCeEEEE
Q psy6213 206 --KTIKVWDLSIKPSLEYSINTIA-SVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK---DVVSGLA 279 (330)
Q Consensus 206 --g~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~---~~v~~~~ 279 (330)
+.+...|..+............ ....+..+|+|.++.+.-. ..+.+.+-|..+... ........ ..+..++
T Consensus 229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~--~~~~V~vid~~~~~v-~~~~~~~~~~~~~~~~~~ 305 (381)
T COG3391 229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS--QGGTVSVIDGATDRV-VKTGPTGNEALGEPVSIA 305 (381)
T ss_pred CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec--CCCeEEEEeCCCCce-eeeecccccccccceecc
Confidence 4888888888754443222222 5677899999998777655 578999999887654 33322221 2355555
Q ss_pred Eec
Q psy6213 280 WRG 282 (330)
Q Consensus 280 ~~~ 282 (330)
+.+
T Consensus 306 ~~~ 308 (381)
T COG3391 306 ISP 308 (381)
T ss_pred cee
Confidence 555
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-05 Score=72.31 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=99.7
Q ss_pred CCCEEEEE-ecCCcEEEEEeecCceeeeeecCCCC-eEEEEEcCCCC------cEEEEEecCCcEEEEecCCCccceeee
Q psy6213 109 ESNWLISG-SQDGTMRLFDIRCQESTKIFHSNTES-VRDVEFNPHSP------YAFASVSENGTIQQWDVRRPEKCFYQF 180 (330)
Q Consensus 109 ~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~------~~~~~~~~dg~i~i~d~~~~~~~~~~~ 180 (330)
+.++|+.. .....|+-.|++.|+.+..+..+... |..++ |+.+ .--+.|-.+..+..||.|-.+..+..-
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 44555543 34578999999999999999876643 55543 4311 124567778889999999754322211
Q ss_pred c----cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEE
Q psy6213 181 T----AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW 256 (330)
Q Consensus 181 ~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~ 256 (330)
. .......|++-..+| +||+|+.+|.||+||--..+......+...+|..+..+.||++++++| +..|.++
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi 644 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLI 644 (794)
T ss_pred cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEE
Confidence 1 123456677766665 699999999999999544322333334578999999999999999998 7888888
Q ss_pred Ec
Q psy6213 257 DI 258 (330)
Q Consensus 257 d~ 258 (330)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 75
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.1e-06 Score=70.63 Aligned_cols=137 Identities=12% Similarity=0.185 Sum_probs=96.1
Q ss_pred cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee-cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH-SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC 176 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 176 (330)
..+.--++.. .+++++.|+.-|.+++|+-..++....-. +..+.+..+..+++.. ++++|+..|.|.++-++.....
T Consensus 34 ~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 34 ARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred ceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCC
Confidence 3444444443 78999999999999999987665443322 2344455666777765 7999999999999988763332
Q ss_pred eeee-----ccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCc----cccceeccccceEEEEEcC
Q psy6213 177 FYQF-----TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKP----SLEYSINTIASVSRIKWRP 236 (330)
Q Consensus 177 ~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~ 236 (330)
...+ +.|+..|++++|++++..+++|...|+|..-.+.... .........+.|-.+....
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 2221 2367889999999999999999999999998887721 1223334456777666543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00058 Score=55.11 Aligned_cols=260 Identities=12% Similarity=0.110 Sum_probs=151.3
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC----------CCcEEEEECCCCCCCceeEE
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT----------NGAVVVWNLGQISRSKQERV 92 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~ 92 (330)
.+.+.++|.++++.+........ ..+..+| +++.++++.. .-.|.+||..+ ......
T Consensus 16 ~~rv~viD~d~~k~lGmi~~g~~---------~~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T---L~~~~E 82 (342)
T PF06433_consen 16 TSRVYVIDADSGKLLGMIDTGFL---------GNVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQT---LSPTGE 82 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEEESS---------EEEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTT---TEEEEE
T ss_pred cceEEEEECCCCcEEEEeecccC---------CceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCc---Ccccce
Confidence 35899999999887765543321 3466788 8888887532 23589999988 433332
Q ss_pred --ecc-cc----cceeEEEEEecCCCEEEEEec--CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC
Q psy6213 93 --FND-HK----RTVNKVSFHYVESNWLISGSQ--DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG 163 (330)
Q Consensus 93 --~~~-~~----~~i~~i~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg 163 (330)
+.. +. .....+.++. +++++++... ...|.+.|+..++.+.++.... |...-|.++.-|.+-+.||
T Consensus 83 I~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 83 IEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRGFSMLCGDG 157 (342)
T ss_dssp EEETTS-B--BS--GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTEEEEEETTS
T ss_pred EecCCcchheecccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecCCCceEEEecCC
Confidence 221 11 1223456664 6676665433 3467888888777777666322 3333354444588889999
Q ss_pred cEEEEecCCCccceee----eccCCCCeE-EEEEcCCCCEEEEEecCCcEEEEeCCCCccccc-ee---c--------cc
Q psy6213 164 TIQQWDVRRPEKCFYQ----FTAHSGPIF-ACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY-SI---N--------TI 226 (330)
Q Consensus 164 ~i~i~d~~~~~~~~~~----~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~---~--------~~ 226 (330)
.+.-..+...++.... |.....++. .-++...+..++-.+.+|.|+--|+........ .. . ..
T Consensus 158 sl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP 237 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP 237 (342)
T ss_dssp CEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred ceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence 9999988865554422 112222222 334444555566678889999988876632110 00 0 11
Q ss_pred cceEEEEEcCCCCeEEEEeecc-----cCC--eEEEEEccCCCccceEeecCCCCeEEEEEecCCC-EEEEe-ecCCeEe
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLV-----VDS--SVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ-LFIAS-SRVSIIP 297 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~-----~~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~-~~dg~i~ 297 (330)
+.-.-+++++....|++..... .++ .|.++|+.+.+. +..+.. ..++.+|+.+.|.+ +|++. ..++.|.
T Consensus 238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLD 315 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEE
T ss_pred cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEE
Confidence 2344577777655555544311 122 477778888766 555543 34588999998655 66554 4579999
Q ss_pred eeecc
Q psy6213 298 RAKNI 302 (330)
Q Consensus 298 iw~~~ 302 (330)
+|+..
T Consensus 316 v~D~~ 320 (342)
T PF06433_consen 316 VYDAA 320 (342)
T ss_dssp EEETT
T ss_pred EEeCc
Confidence 99865
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0014 Score=56.41 Aligned_cols=224 Identities=15% Similarity=0.116 Sum_probs=117.3
Q ss_pred eeeeeecccCCcEEEEE-cCCC----cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC--------
Q psy6213 54 CNDVAWSCIEENHIATG-ATNG----AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG-------- 120 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~-------- 120 (330)
+...+++| +++++|.+ +..| .++++|+++ ++.+...- .......+.|.+ +++.|+....+.
T Consensus 126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~t---g~~l~d~i-~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLET---GKFLPDGI-ENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTT---TEEEEEEE-EEEESEEEEECT-TSSEEEEEECSTTTSS-CCG
T ss_pred eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCC---CcCcCCcc-cccccceEEEeC-CCCEEEEEEeCcccccccCC
Confidence 45778999 88888765 3334 499999988 44433211 111222399997 666665554332
Q ss_pred ---cEEEEEeecCcee--eeeecCCCC--eEEEEEcCCCCcEEEEEecCC---cEEEEecCCC---ccceeeeccCCCCe
Q psy6213 121 ---TMRLFDIRCQEST--KIFHSNTES--VRDVEFNPHSPYAFASVSENG---TIQQWDVRRP---EKCFYQFTAHSGPI 187 (330)
Q Consensus 121 ---~i~i~d~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~---~~~~~~~~~~~~~i 187 (330)
.|+.|.+.+.... ..+...... ...+..+++++++++...... .+++.|+... ......+......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 3777777655432 444443333 578889999998776665544 4788888763 22333443333333
Q ss_pred -EEEEEcCCCCEEEEEe---cCCcEEEEeCCCCcc---ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 188 -FACDWHPEHAWLATAS---RDKTIKVWDLSIKPS---LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 188 -~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
..+... .+.+++... ..+.|.-.++..... ......+...+.-..+...+.+|++.........|+++++..
T Consensus 280 ~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 280 EYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-
T ss_pred EEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC
Confidence 344444 444444332 235677778777643 123334444333333334455677776632334688888882
Q ss_pred CCccceEee-cCCCCeEEEEEecCCC
Q psy6213 261 PYIPLASFT-EHKDVVSGLAWRGDPQ 285 (330)
Q Consensus 261 ~~~~~~~~~-~~~~~v~~~~~~~~~~ 285 (330)
+.. ..... .-.+.|..+...+++.
T Consensus 359 ~~~-~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 359 GKE-SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp TEE-EEEEESSSSSEEEEEES-TT-S
T ss_pred CcE-EeeecCCcceEEeccCCCCCCC
Confidence 222 22222 2234455555445444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-05 Score=69.13 Aligned_cols=140 Identities=13% Similarity=0.177 Sum_probs=95.6
Q ss_pred eeecccCCcEEEEEcCCCcEEEEECCCCCCCceeE-EecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeee
Q psy6213 57 VAWSCIEENHIATGATNGAVVVWNLGQISRSKQER-VFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI 135 (330)
Q Consensus 57 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 135 (330)
-++.. ++++++.|+.-|.+++|+-.. +.... ...+-.+.+..+..++ +..++|.|+..|.|.++.++...+...
T Consensus 39 Tc~ds-t~~~l~~GsS~G~lyl~~R~~---~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 39 TCVDA-TEEYLAMGSSAGSVYLYNRHT---GEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEeec-CCceEEEecccceEEEEecCc---hhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCcc
Confidence 34454 789999999999999999765 22222 1222445666677776 788889999999999998876433211
Q ss_pred e------ecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCc---cceeeeccCCCCeEEEEEcCCCCEEEEEe
Q psy6213 136 F------HSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE---KCFYQFTAHSGPIFACDWHPEHAWLATAS 203 (330)
Q Consensus 136 ~------~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 203 (330)
. +.|...|++++|++++. .+++|...|+|..-.+.... ...+.+....+.|..+.+. ++.+|++..
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl 188 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL 188 (726)
T ss_pred eeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh
Confidence 1 23678899999999999 59999999999988877510 1122233345778778776 333444333
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0011 Score=58.13 Aligned_cols=271 Identities=11% Similarity=0.105 Sum_probs=142.7
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccce-eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEE
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSC-NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERV 92 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 92 (330)
++...+.. ++.+.-.|..+++..-.+.............+ ..++.. ++..++.++.+|.|.-+|.++ ++.+-.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~T---G~~~W~ 135 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAET---GKQVWK 135 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCC---CCEeee
Confidence 44444444 88898899988876655443322000000000 011111 227788888899999999988 555544
Q ss_pred ecccccc-----e-eEEEEEecCCCEEEEEe---------cCCcEEEEEeecCceeeeeecCCCC---------------
Q psy6213 93 FNDHKRT-----V-NKVSFHYVESNWLISGS---------QDGTMRLFDIRCQESTKIFHSNTES--------------- 142 (330)
Q Consensus 93 ~~~~~~~-----i-~~i~~~~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~--------------- 142 (330)
+...... + ....+. + ..++.++ .++.+..+|..+++.+-.++.....
T Consensus 136 ~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 136 FGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred ecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 4322210 1 112222 2 4454543 3678999999999887766532110
Q ss_pred -----e-EEEEEcCCCCcEEEEEecCC------------------cEEEEecCCCccceeeec--cCCC----CeEEEEE
Q psy6213 143 -----V-RDVEFNPHSPYAFASVSENG------------------TIQQWDVRRPEKCFYQFT--AHSG----PIFACDW 192 (330)
Q Consensus 143 -----v-~~~~~~~~~~~~~~~~~~dg------------------~i~i~d~~~~~~~~~~~~--~~~~----~i~~~~~ 192 (330)
+ ...++.+.+. +++.++.++ .|.-+|.++++. .-.++ .+.. ......+
T Consensus 213 ~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-~W~~~~~~~~~~~~~~~s~p~~ 290 (488)
T cd00216 213 PGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-KWFYQTTPHDLWDYDGPNQPSL 290 (488)
T ss_pred CCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-EEEeeCCCCCCcccccCCCCeE
Confidence 1 1234444445 567776555 688889888443 33222 1110 0011111
Q ss_pred c----CCCC---EEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEee---------------cccC
Q psy6213 193 H----PEHA---WLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCS---------------LVVD 250 (330)
Q Consensus 193 ~----~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------~~~~ 250 (330)
. -++. .++.++.+|.+..+|.++++.+...... ...++.+| + .+++... ...+
T Consensus 291 ~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~ 365 (488)
T cd00216 291 ADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGK 365 (488)
T ss_pred EeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEEEccccccccCcccccCCCCCCCc
Confidence 1 1333 6788889999999999999654432211 11233344 2 2222210 0036
Q ss_pred CeEEEEEccCCCccceEeecC--C------CCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 251 SSVNVWDIRRPYIPLASFTEH--K------DVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 251 ~~i~i~d~~~~~~~~~~~~~~--~------~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
|.+.-.|..+++. +-..... . .+...-...-.+..|+.++.||.|+.++.
T Consensus 366 G~l~AlD~~tG~~-~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 366 GGLAALDPKTGKV-VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred eEEEEEeCCCCcE-eeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEEC
Confidence 7888888888865 2222211 0 11111011125678888889999988764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00029 Score=58.45 Aligned_cols=226 Identities=11% Similarity=0.081 Sum_probs=105.2
Q ss_pred CCCe-eecC--CCeEEEEEcCCc----ceeeeeceee-ccccccccceeeeeecccCCcEEEEEcC------CCcEEEEE
Q psy6213 15 DNGL-AQPS--RNVFKIFLIKDT----EFVETHNLRV-GKNINLNFSCNDVAWSCIEENHIATGAT------NGAVVVWN 80 (330)
Q Consensus 15 ~~~~-~~~g--d~~i~iw~~~~~----~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iw~ 80 (330)
+.++ ++-| ++.|.|.|+.+. ++.+.++... .....+..+ ..+-.-| +++.++++-. -|.+.++|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~P-HT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRP-HTVHCLP-DGRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEE-EEEEE-S-S--EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCC-ceeeecC-CccEEEEeccCCCCCCCCcEEEEc
Confidence 3455 5556 999999999853 2222222100 111111121 3344445 7888887532 24577888
Q ss_pred CCCCCCCceeEEeccc---ccceeEEEEEecCCCEEEEEec--------------------CCcEEEEEeecCceeeeee
Q psy6213 81 LGQISRSKQERVFNDH---KRTVNKVSFHYVESNWLISGSQ--------------------DGTMRLFDIRCQESTKIFH 137 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~ 137 (330)
-++ .......... ..--..+-|.| ..+.+++... ..++.+||+.+.+.++++.
T Consensus 164 ~~t---f~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 164 GET---FEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp TTT-----EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred Ccc---ccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence 776 4444444322 23456777888 7777877642 3579999999999999987
Q ss_pred cCCC--CeEEEEEc--CCCCcEEEEEecCCcEEEEecCCCcc----ceeeec-----------------cCCCCeEEEEE
Q psy6213 138 SNTE--SVRDVEFN--PHSPYAFASVSENGTIQQWDVRRPEK----CFYQFT-----------------AHSGPIFACDW 192 (330)
Q Consensus 138 ~~~~--~v~~~~~~--~~~~~~~~~~~~dg~i~i~d~~~~~~----~~~~~~-----------------~~~~~i~~~~~ 192 (330)
.... ....+.|. |+..+-|+.+.-.++|..|--...+. .+..+. .-..-|+.|..
T Consensus 240 Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 6442 35566665 44555555555555666554322111 111111 11345899999
Q ss_pred cCCCCEEEEEe-cCCcEEEEeCCCCcccccee-------------------ccccceEEEEEcCCCCeEEEEee
Q psy6213 193 HPEHAWLATAS-RDKTIKVWDLSIKPSLEYSI-------------------NTIASVSRIKWRPQRKFHLASCS 246 (330)
Q Consensus 193 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~l~~~~~ 246 (330)
|.|.++|..++ .+|.++.||+.......... ...+....+..|-||+.|.++.+
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 99999988777 68999999998764322211 11234578899999999888876
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00076 Score=56.85 Aligned_cols=196 Identities=15% Similarity=0.140 Sum_probs=113.0
Q ss_pred ceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-------------------------------------------eee
Q psy6213 99 TVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-------------------------------------------TKI 135 (330)
Q Consensus 99 ~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------------------------------------------~~~ 135 (330)
.|+.+.|.+ +...|++|...|.|.+|.....+. ...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 578888987 777888999999999886542211 111
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceee--ecc------CCCCeEEEEEcC-----CC---CEE
Q psy6213 136 FHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ--FTA------HSGPIFACDWHP-----EH---AWL 199 (330)
Q Consensus 136 ~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~--~~~------~~~~i~~~~~~~-----~~---~~l 199 (330)
++...++|++++.+.-| +++.|.++|.+.+.|+|.+. .+.. +.. ....++++.|.- |+ -.+
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa-vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA-VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE-EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe-EEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 22346789999998777 79999999999999998643 2222 111 234678888863 33 478
Q ss_pred EEEecCCcEEEEeCCC-C-cc-c----cceeccccceEEEE-EcCC--------------------CCeEEEEeecccCC
Q psy6213 200 ATASRDKTIKVWDLSI-K-PS-L----EYSINTIASVSRIK-WRPQ--------------------RKFHLASCSLVVDS 251 (330)
Q Consensus 200 ~~~~~dg~i~i~d~~~-~-~~-~----~~~~~~~~~v~~~~-~~~~--------------------~~~l~~~~~~~~~~ 251 (330)
++|+..|.+.+|.+.- . .. . .....+.+++..+. ++.+ -+.+++.++ +.
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS---e~ 235 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS---ES 235 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SS
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc---cc
Confidence 9999999999998752 1 11 0 11112334444443 3211 112455565 99
Q ss_pred eEEEEEccCCCccceEeecCCCCeEEEEEe-----cCCCEEEEeecCCeEeeeecc
Q psy6213 252 SVNVWDIRRPYIPLASFTEHKDVVSGLAWR-----GDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 252 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.++++...+.+.....+ ........+.+- ..+..|++-..+|.++++...
T Consensus 236 ~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred ceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 99999998876533333 222233344452 367788889999999999865
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00093 Score=51.21 Aligned_cols=113 Identities=13% Similarity=0.168 Sum_probs=73.0
Q ss_pred EeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCc
Q psy6213 12 LKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSK 88 (330)
Q Consensus 12 ~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 88 (330)
..+|.+. +..| .+.+.--|..+|++.-...+... ....++. -+++++.|+..|.+++.+..+ +.
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~R------iE~sa~v----vgdfVV~GCy~g~lYfl~~~t---Gs 84 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR------IECSAIV----VGDFVVLGCYSGGLYFLCVKT---GS 84 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhCce------eeeeeEE----ECCEEEEEEccCcEEEEEecc---hh
Confidence 3445544 5566 88888889988876543322211 1112222 367899999999999999988 44
Q ss_pred eeEEecccccceeE-EEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC
Q psy6213 89 QERVFNDHKRTVNK-VSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN 139 (330)
Q Consensus 89 ~~~~~~~~~~~i~~-i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 139 (330)
....+... +.|.+ ....+ ++.++..|+.|++.+..|.++..++...+..
T Consensus 85 ~~w~f~~~-~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcg 134 (354)
T KOG4649|consen 85 QIWNFVIL-ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCG 134 (354)
T ss_pred heeeeeeh-hhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecccC
Confidence 44333321 22222 22333 7899999999999999999988777665533
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0018 Score=53.64 Aligned_cols=214 Identities=9% Similarity=0.043 Sum_probs=118.1
Q ss_pred cEEEEECCCCCCCceeEEecc-cccceeEEEEEec------CCCEEEEEec---------C-CcEEEEEeecC----cee
Q psy6213 75 AVVVWNLGQISRSKQERVFND-HKRTVNKVSFHYV------ESNWLISGSQ---------D-GTMRLFDIRCQ----EST 133 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~------~~~~l~~~~~---------d-~~i~i~d~~~~----~~~ 133 (330)
.|++.|..+ ...+..+.- ....+.+++.... ...++++|+. . |.|.++++... ..+
T Consensus 3 ~i~l~d~~~---~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 3 SIRLVDPTT---FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp EEEEEETTT---SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred EEEEEeCCC---CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 577888766 444443332 2233444443221 1567777754 2 88999999874 122
Q ss_pred eee--ecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee-eeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 134 KIF--HSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY-QFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 134 ~~~--~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
..+ ....++|++++-- +.+ ++++ .++.|.+|++........ ........+.++... ++++++|.....+.+
T Consensus 80 ~~i~~~~~~g~V~ai~~~--~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF--NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEEEESS-EEEEEEE--TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEEEEeecCcceEhhhh--CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 211 2246789988766 333 3333 358899999987541222 122223356666555 669999998888888
Q ss_pred EeCCCCcc-ccce--eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC-------C-ccceEeec-CCCCeEEE
Q psy6213 211 WDLSIKPS-LEYS--INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP-------Y-IPLASFTE-HKDVVSGL 278 (330)
Q Consensus 211 ~d~~~~~~-~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~-------~-~~~~~~~~-~~~~v~~~ 278 (330)
+..+.... .... ......++++.|-+++.. ++++. .+|.+.++..... . .......- ....|+++
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~-~i~~D--~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDT-IIVGD--KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF 230 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE-EEEEE--TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcE-EEEEc--CCCeEEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence 85544222 2222 223556888999867665 55555 6999999987631 1 11111122 23567777
Q ss_pred ---EEecC--C------CEEEEeecCCeEeeee
Q psy6213 279 ---AWRGD--P------QLFIASSRVSIIPRAK 300 (330)
Q Consensus 279 ---~~~~~--~------~~l~s~~~dg~i~iw~ 300 (330)
.+.|. + ..++.++.+|.|...-
T Consensus 231 ~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 231 RRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp EE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred EEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 44441 2 2488888999998543
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0012 Score=50.60 Aligned_cols=142 Identities=10% Similarity=0.105 Sum_probs=92.8
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCC
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES 142 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 142 (330)
...+++.|+..+.+.--|..+ ++..-.- .-...+.+-+.- -+++++.|+..|.+++.+.++|.....+.....-
T Consensus 22 skT~v~igSHs~~~~avd~~s---G~~~We~-ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQS---GNLIWEA-ILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred CceEEEEecCCceEEEecCCC---CcEEeeh-hhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 567888899888888888876 3332211 122344444443 3677999999999999999999888777643322
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeC
Q psy6213 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~ 213 (330)
=......+++. ++..|+.|++.+..|.++ ..++...+-..+.-.+-+..| ++.+. .+...|.+.--..
T Consensus 96 k~~a~~d~~~g-lIycgshd~~~yalD~~~-~~cVykskcgG~~f~sP~i~~g~~sly-~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 96 KVRAQCDFDGG-LIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVSPVIAPGDGSLY-AAITAGAVLAVTK 164 (354)
T ss_pred ccceEEcCCCc-eEEEecCCCcEEEecccc-cceEEecccCCceeccceecCCCceEE-EEeccceEEEEcc
Confidence 22345667777 799999999999999998 566666554444344555666 44433 3444454443333
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0031 Score=53.88 Aligned_cols=195 Identities=11% Similarity=0.101 Sum_probs=97.7
Q ss_pred eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC---CCceeEEeccccccee
Q psy6213 25 VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS---RSKQERVFNDHKRTVN 101 (330)
Q Consensus 25 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~i~ 101 (330)
.|+||+.. |+.+....... ..+.++.|+. + ..|++-..||.+++||+.... -+.......-....+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~-------~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~ 131 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS-------GRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIF 131 (410)
T ss_pred EEEEECCC-CCEeEEEEECC-------CCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCceeechhhhccccCccccccc
Confidence 58888765 44444444443 2358999986 4 555566789999999986411 0011111111112222
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEEeecCc-eeeeeecCCC---------CeEE-EEEcCCCCcEEEEEecCCcEEEEec
Q psy6213 102 KVSFHYVESNWLISGSQDGTMRLFDIRCQE-STKIFHSNTE---------SVRD-VEFNPHSPYAFASVSENGTIQQWDV 170 (330)
Q Consensus 102 ~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~---------~v~~-~~~~~~~~~~~~~~~~dg~i~i~d~ 170 (330)
...+.. +| ++.-..++.+.+.+-.... ..+.+..-.. .... ..++.+.. ..+....++.+.+.+-
T Consensus 132 ~~~~~~-~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~ 207 (410)
T PF04841_consen 132 AIWFYK-NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDE 207 (410)
T ss_pred ccccCC-CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEc
Confidence 223221 33 3333334555444322111 1111110000 0000 22333443 3444445556664443
Q ss_pred CCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc-eeccccceEEEEEcCCC
Q psy6213 171 RRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY-SINTIASVSRIKWRPQR 238 (330)
Q Consensus 171 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~ 238 (330)
... . .+. ..+++..++.||+++++|.-..+|.+.+....-.+.... ..........+.|.-+.
T Consensus 208 ~~~-~---~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 208 NSF-K---QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ccc-c---ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 321 1 122 346899999999999999999999999987654433221 22223556677776654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.9e-05 Score=63.66 Aligned_cols=145 Identities=12% Similarity=0.183 Sum_probs=100.5
Q ss_pred CCCEE-EEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCc------EEEEEecCCcEEEEecCCCcc-ceeee
Q psy6213 109 ESNWL-ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPY------AFASVSENGTIQQWDVRRPEK-CFYQF 180 (330)
Q Consensus 109 ~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~~dg~i~i~d~~~~~~-~~~~~ 180 (330)
+.++| .++.....++-.|++.|+.+..++.+.. |.-+.+.|+.+. --+.|-.+..|.-||++-.+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 44444 4556667799999999999999986655 777778776541 123456678899999986444 22222
Q ss_pred ccCC----CCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEE
Q psy6213 181 TAHS----GPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW 256 (330)
Q Consensus 181 ~~~~----~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~ 256 (330)
+.|. ..-.|.+-..+ .++++|+.+|.|++||.-..+..........+|..+..+.+|++++++| +..+.+.
T Consensus 423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC----KTYLLLI 497 (644)
T ss_pred eccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec----ccEEEEE
Confidence 2221 22344444434 4799999999999999844333444455678999999999999988887 7788877
Q ss_pred Ecc
Q psy6213 257 DIR 259 (330)
Q Consensus 257 d~~ 259 (330)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 764
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.002 Score=52.34 Aligned_cols=220 Identities=8% Similarity=0.038 Sum_probs=119.8
Q ss_pred EeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCc
Q psy6213 12 LKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSK 88 (330)
Q Consensus 12 ~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 88 (330)
|.++... +.+. .+.|.-|+..+++.. .+..+.. +.++..-. .+..|+++. . .+.+++.+......
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~--------~~~~~~~d-~~g~Lv~~~-~-g~~~~~~~~~~~~t 99 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGG--------FSSGALID-AGGRLIACE-H-GVRLLDPDTGGKIT 99 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCC--------cccceeec-CCCeEEEEc-c-ccEEEeccCCceeE
Confidence 4455553 4444 777777777655422 2211111 23333322 344555443 3 36677765421111
Q ss_pred eeEEec-c-cccceeEEEEEecCCCEEEEEec-----------CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcE
Q psy6213 89 QERVFN-D-HKRTVNKVSFHYVESNWLISGSQ-----------DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 89 ~~~~~~-~-~~~~i~~i~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
...... + .....+.....| ++.+.++... -|.|+.+|. .+..++.+..+-..-+.++|||+++.+
T Consensus 100 ~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 100 LLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred EeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEE
Confidence 111111 1 113456777787 6665554332 133444443 455555555445556789999999965
Q ss_pred EEEEecCCcEEEEecCC-C----cc-ceeeeccCCCCeEEEEEcCCCCEEEEEecCC-cEEEEeCCCCccccceeccccc
Q psy6213 156 FASVSENGTIQQWDVRR-P----EK-CFYQFTAHSGPIFACDWHPEHAWLATASRDK-TIKVWDLSIKPSLEYSINTIAS 228 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~-~----~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~ 228 (330)
+++=+..+.|..|++.. . .+ ....+....+..-.++...+|.+.+++..+| .|.+|+.. ++......-....
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~ 256 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKR 256 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCC
Confidence 55556668888887762 1 11 1122223446666788888888776555554 89999988 5444443333366
Q ss_pred eEEEEEc-CCCCeEEEEee
Q psy6213 229 VSRIKWR-PQRKFHLASCS 246 (330)
Q Consensus 229 v~~~~~~-~~~~~l~~~~~ 246 (330)
+++++|- |+.+.|++++.
T Consensus 257 ~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 257 PTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CccceEeCCCcCEEEEEec
Confidence 7777774 45666666665
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.9e-05 Score=65.39 Aligned_cols=269 Identities=11% Similarity=0.097 Sum_probs=141.6
Q ss_pred cceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCC
Q psy6213 6 PVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 83 (330)
.+++++|+|..-.++.| -|.+.+|...+.+..... ..+..++..+.||| +|+.++++..-|.+.+|....
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~-------~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV-------ETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeec-------cCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence 35679999987778888 899999998876654332 23345578999999 999999999999999999875
Q ss_pred CCCCceeEEecccc--cce--eEEEEEecCC-----CEEEEEecCCcEE-EEEeecCceeeeeecCCCCeEEEEEcCCCC
Q psy6213 84 ISRSKQERVFNDHK--RTV--NKVSFHYVES-----NWLISGSQDGTMR-LFDIRCQESTKIFHSNTESVRDVEFNPHSP 153 (330)
Q Consensus 84 ~~~~~~~~~~~~~~--~~i--~~i~~~~~~~-----~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 153 (330)
.++.+....+ .|. ..+ .|...++... ...++.+.+..+- .++.+.....+... + .=.|+|.
T Consensus 133 ~g~~q~~~~~-~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-------sgv~~g~ 203 (1416)
T KOG3617|consen 133 IGEIQTSNIM-QHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-------SGVPKGT 203 (1416)
T ss_pred ccccccchhh-hhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c-------cCCCCCc
Confidence 2222221111 122 223 3344444211 1234444443332 22222111111111 1 1135665
Q ss_pred cEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEE------------------------------e
Q psy6213 154 YAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATA------------------------------S 203 (330)
Q Consensus 154 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------------------~ 203 (330)
.|+.++.+|+|+-.|-.. ......+.. +. ..+-|.+...-+++. +
T Consensus 204 -~F~~~~~~GtVyyvdq~g--~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Gg 278 (1416)
T KOG3617|consen 204 -EFLFAGKSGTVYYVDQNG--RQRTVHKLD-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGG 278 (1416)
T ss_pred -EEEEEcCCceEEEEcCCC--cEEEEEEcc-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCC
Confidence 577888899888887442 222221110 00 111122211111111 1
Q ss_pred cCCcEEEEeCCCC--ccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC-Cc-----cceEe---ecCC
Q psy6213 204 RDKTIKVWDLSIK--PSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP-YI-----PLASF---TEHK 272 (330)
Q Consensus 204 ~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~-~~-----~~~~~---~~~~ 272 (330)
..|.|-+=....- +....-......+.+++++..+..+.++. ..|.+.+|--... -. -.-.+ ..-.
T Consensus 279 rqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt---~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~ 355 (1416)
T KOG3617|consen 279 RQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGT---KEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESL 355 (1416)
T ss_pred ccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecc---cCCcEEEeeecCccccCCCCcceEEecCchhhc
Confidence 1111111110000 01122223456799999999988755554 5999999953322 11 01122 2334
Q ss_pred CCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 273 DVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 273 ~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
+.|..+.|.|-...++.-+....+.+=
T Consensus 356 g~I~~i~Wg~~k~~~avn~~~~v~ll~ 382 (1416)
T KOG3617|consen 356 GKISLIRWGPIKSTAAVNTEEDVVLLG 382 (1416)
T ss_pred cceEEEEeccccchhhhhhhhheeeec
Confidence 689999999966666555555444443
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.9e-05 Score=67.29 Aligned_cols=95 Identities=13% Similarity=0.215 Sum_probs=77.5
Q ss_pred ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeE-EEEEcCCCCcEEEEEecCCcEEEEecCCCcc
Q psy6213 97 KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVR-DVEFNPHSPYAFASVSENGTIQQWDVRRPEK 175 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 175 (330)
...+.-+.|+| .-.++|.+..+|.|.+..++ .+.+.++..+...++ +++|.|||+ +++.|-.||+|++.|..++..
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 35677899999 88999999999999999998 777888876777777 999999998 799999999999999998654
Q ss_pred ceeeeccCCCCeEEEEEcC
Q psy6213 176 CFYQFTAHSGPIFACDWHP 194 (330)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~ 194 (330)
...........|.++-|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 4333333456777888863
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00027 Score=46.94 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=68.0
Q ss_pred eeeeeecc---cCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 54 CNDVAWSC---IEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 54 v~~~~~~~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
|+++++.. +..+.|++|+.|..|++|+-+. .+..+. ..+.|.+++-. ....|+.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----~~~Ei~-e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~-- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----IVAEIT-ETDKVTSLCSL--GGGRFAYALANGTVGVYDRS-- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----EEEEEe-cccceEEEEEc--CCCEEEEEecCCEEEEEeCc--
Confidence 35555543 2347899999999999998643 333443 34677777776 45889999999999999753
Q ss_pred ceeeeeecCCCCeEEEEEc---CCCCcEEEEEecCCcEE
Q psy6213 131 ESTKIFHSNTESVRDVEFN---PHSPYAFASVSENGTIQ 166 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~dg~i~ 166 (330)
+.+-..+... .+.++++. .+|..-|++|-.+|.|-
T Consensus 72 ~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3344444333 35555543 33444588888888764
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0052 Score=53.99 Aligned_cols=233 Identities=9% Similarity=0.075 Sum_probs=121.8
Q ss_pred CCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccce-eeeeecccCCcEEEEEc---------CCCcEEEEECCCC
Q psy6213 16 NGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSC-NDVAWSCIEENHIATGA---------TNGAVVVWNLGQI 84 (330)
Q Consensus 16 ~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~---------~dg~i~iw~~~~~ 84 (330)
++.++.. ++.|.-+|.++++..-.+......... +.+ ....+ .+..++.++ .+|.+..+|..+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~--~~i~ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~T- 184 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPG--YTMTGAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVET- 184 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcc--eEecCCCEE---ECCEEEEeccccccccCCCCcEEEEEECCC-
Confidence 4445555 999999999999877665543221000 000 11112 124454543 357788888877
Q ss_pred CCCceeEEeccccc--------------------ce-eEEEEEecCCCEEEEEecCC------------------cEEEE
Q psy6213 85 SRSKQERVFNDHKR--------------------TV-NKVSFHYVESNWLISGSQDG------------------TMRLF 125 (330)
Q Consensus 85 ~~~~~~~~~~~~~~--------------------~i-~~i~~~~~~~~~l~~~~~d~------------------~i~i~ 125 (330)
++..-.+..... .+ ....+.+ .+..++.++.++ .|.-+
T Consensus 185 --G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Al 261 (488)
T cd00216 185 --GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVAL 261 (488)
T ss_pred --CceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEE
Confidence 333333221100 01 1233343 456777776554 79999
Q ss_pred EeecCceeeeeecCCCCeE------EEEEc----CCC--CcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEc
Q psy6213 126 DIRCQESTKIFHSNTESVR------DVEFN----PHS--PYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWH 193 (330)
Q Consensus 126 d~~~~~~~~~~~~~~~~v~------~~~~~----~~~--~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 193 (330)
|.++++..-.++....... ...+. -++ ..+++.++.+|.+..+|.++++ .+-..... ...+..+
T Consensus 262 d~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~-~~W~~~~~---~~~~~~~ 337 (488)
T cd00216 262 DADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK-LISARPEV---EQPMAYD 337 (488)
T ss_pred cCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCc-EeeEeEee---ccccccC
Confidence 9999998877653211110 00111 112 1257788889999999999844 33322211 1122333
Q ss_pred CCCCEEEEE------------------ecCCcEEEEeCCCCccccceeccc--------cce--EEEEEcCCCCeEEEEe
Q psy6213 194 PEHAWLATA------------------SRDKTIKVWDLSIKPSLEYSINTI--------ASV--SRIKWRPQRKFHLASC 245 (330)
Q Consensus 194 ~~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~--------~~v--~~~~~~~~~~~l~~~~ 245 (330)
| ..++.+ ..+|.+.-.|..+++.+-...... .+. ..+.. .+..++++.
T Consensus 338 ~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~ 413 (488)
T cd00216 338 P--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGA 413 (488)
T ss_pred C--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEEC
Confidence 3 222221 235677778887775433222110 111 11222 334444444
Q ss_pred ecccCCeEEEEEccCCCccceEee
Q psy6213 246 SLVVDSSVNVWDIRRPYIPLASFT 269 (330)
Q Consensus 246 ~~~~~~~i~i~d~~~~~~~~~~~~ 269 (330)
.+|.|+.+|.++++. +-..+
T Consensus 414 ---~dG~l~ald~~tG~~-lW~~~ 433 (488)
T cd00216 414 ---ADGYFRAFDATTGKE-LWKFR 433 (488)
T ss_pred ---CCCeEEEEECCCCce-eeEEE
Confidence 599999999999986 44444
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0018 Score=57.73 Aligned_cols=187 Identities=9% Similarity=0.026 Sum_probs=101.8
Q ss_pred cceeEEEEEecCCCEEEEEe------cCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecC---------
Q psy6213 98 RTVNKVSFHYVESNWLISGS------QDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN--------- 162 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d--------- 162 (330)
..+...+++| +++.++... .|..-.+|-...+.....+.. ......-.|+|+|+. +++....
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~-lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADA-VWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCc-eEEEecCcceEEEecc
Confidence 4678889998 677666544 244334443332222233322 224778899999874 4444322
Q ss_pred ---CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE---EeCCCCcc-c---cceec-cccceEE
Q psy6213 163 ---GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV---WDLSIKPS-L---EYSIN-TIASVSR 231 (330)
Q Consensus 163 ---g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~~-~~~~v~~ 231 (330)
+.+.+.++.. ..... ...+.|..+.|+|||..++... +|.|.+ -....+.. + ..... ....+..
T Consensus 427 ~~~gql~~~~vd~-ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 427 PATGQLARTPVDA-SAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCCceEEEEeccC-chhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 2333334433 11111 2356799999999999888766 477777 33333321 1 11111 2234688
Q ss_pred EEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec--CCCCeEEEEEecCCCEEEEeecCCeEee
Q psy6213 232 IKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE--HKDVVSGLAWRGDPQLFIASSRVSIIPR 298 (330)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~i 298 (330)
+.|.+++.. ++... ..+..+...++..... ..+.. ...++.+++-+++ .++....+|.+.+
T Consensus 502 l~W~~~~~L-~V~~~-~~~~~v~~v~vDG~~~--~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 502 LDWRTGDSL-VVGRS-DPEHPVWYVNLDGSNS--DALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ceEecCCEE-EEEec-CCCCceEEEecCCccc--cccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 999999985 44433 1233444444443322 12122 2467777877763 4556667775554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0041 Score=50.55 Aligned_cols=221 Identities=13% Similarity=0.093 Sum_probs=129.0
Q ss_pred eeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeee
Q psy6213 56 DVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI 135 (330)
Q Consensus 56 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 135 (330)
...|.+..+.++.+--..+.|.-|+..+ ++ ...+. +.+.+.++.... .+..|+++.. -+.+++.+++..+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~---g~-~~~~~-~p~~~~~~~~~d-~~g~Lv~~~~--g~~~~~~~~~~~~t~ 100 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPET---GK-KRVFP-SPGGFSSGALID-AGGRLIACEH--GVRLLDPDTGGKITL 100 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCc---Cc-eEEEE-CCCCcccceeec-CCCeEEEEcc--ccEEEeccCCceeEE
Confidence 4467773444666666778888898865 22 22222 233344444442 4555555543 467777765554332
Q ss_pred eec-----CCCCeEEEEEcCCCCcEEEEEecC------------CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCE
Q psy6213 136 FHS-----NTESVRDVEFNPHSPYAFASVSEN------------GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAW 198 (330)
Q Consensus 136 ~~~-----~~~~v~~~~~~~~~~~~~~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 198 (330)
+.. .....+.....|+|.. ..+... |.|+.+|.. +...+.+..+-..-+.|+||||++.
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~~--wfgt~~~~~~~~~~~~~~G~lyr~~p~--g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGRI--WFGDMGYFDLGKSEERPTGSLYRVDPD--GGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCCE--EEeCCCccccCccccCCcceEEEEcCC--CCEEEeecCcEEecCceEECCCCCE
Confidence 221 1235667888999873 333322 335555542 4445555555666789999999987
Q ss_pred EEEEec-CCcEEEEeCCC--Ccc-----ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec
Q psy6213 199 LATASR-DKTIKVWDLSI--KPS-----LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE 270 (330)
Q Consensus 199 l~~~~~-dg~i~i~d~~~--~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 270 (330)
|..+.. .+.|.-|++.. ... ........+..-.++...+|.+.+++.. ..+.|..|+.. +++ +.....
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~--~g~~v~~~~pd-G~l-~~~i~l 252 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW--GGGRVVRFNPD-GKL-LGEIKL 252 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc--CCceEEEECCC-CcE-EEEEEC
Confidence 766654 47788887752 111 1111123456677888888886444433 12399999988 555 666666
Q ss_pred CCCCeEEEEEec-CCCEEEEeec
Q psy6213 271 HKDVVSGLAWRG-DPQLFIASSR 292 (330)
Q Consensus 271 ~~~~v~~~~~~~-~~~~l~s~~~ 292 (330)
+...+++++|-- +.+.|...+.
T Consensus 253 P~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 253 PVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCCccceEeCCCcCEEEEEec
Confidence 657788888854 4454444443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0058 Score=51.04 Aligned_cols=224 Identities=12% Similarity=0.126 Sum_probs=104.6
Q ss_pred CCcEEEEEc-CCCcEEEEECCCC-CCCceeEEecc---cc----cceeEEEEEecCCCEEEEEec------CCcEEEEEe
Q psy6213 63 EENHIATGA-TNGAVVVWNLGQI-SRSKQERVFND---HK----RTVNKVSFHYVESNWLISGSQ------DGTMRLFDI 127 (330)
Q Consensus 63 ~~~~l~~~~-~dg~i~iw~~~~~-~~~~~~~~~~~---~~----~~i~~i~~~~~~~~~l~~~~~------d~~i~i~d~ 127 (330)
+.++|+..+ ..++|.|.|+.+. ...+..+.+.. +. ..-..+..-| ++++++++-. -|-+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcC
Confidence 455666655 6788999999853 33444444442 11 1222333344 7778887532 246888888
Q ss_pred ecCceeeeeecCC---CCeEEEEEcCCCCcEEEEEe--------------------cCCcEEEEecCCCccceeeeccCC
Q psy6213 128 RCQESTKIFHSNT---ESVRDVEFNPHSPYAFASVS--------------------ENGTIQQWDVRRPEKCFYQFTAHS 184 (330)
Q Consensus 128 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~--------------------~dg~i~i~d~~~~~~~~~~~~~~~ 184 (330)
++.+.....+... ..-..+-|.|..+ ++++.. ...++.+||+.+ .+.++++.-..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-r~~~Q~idLg~ 242 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-RKLLQTIDLGE 242 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-TEEEEEEES-T
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-CcEeeEEecCC
Confidence 7777776665422 2346777888776 566653 235799999998 66677665432
Q ss_pred C--CeEEEEEc--CCCCE-EEEEecCCcEEEEeC-CCCc----cccce---------e--------ccccceEEEEEcCC
Q psy6213 185 G--PIFACDWH--PEHAW-LATASRDKTIKVWDL-SIKP----SLEYS---------I--------NTIASVSRIKWRPQ 237 (330)
Q Consensus 185 ~--~i~~~~~~--~~~~~-l~~~~~dg~i~i~d~-~~~~----~~~~~---------~--------~~~~~v~~~~~~~~ 237 (330)
. ....+.|. |+..+ ++.+...++|..|-- ..++ .+... . ....-++.+..|.|
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 2 34456664 44444 333334444544433 2221 00000 0 01345899999999
Q ss_pred CCeEEEEeecccCCeEEEEEccCCCccceEeecC------------------CCCeEEEEEecCCCEEEEee
Q psy6213 238 RKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH------------------KDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~s~~ 291 (330)
.++|.+++- ..|.++.||+..+..|...-+.. .+...-+..|.||+.|...+
T Consensus 323 DrfLYvs~W--~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 323 DRFLYVSNW--LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S-EEEEEET--TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CCEEEEEcc--cCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 999999988 79999999999877654332211 12235667777888777654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.4e-05 Score=65.14 Aligned_cols=95 Identities=19% Similarity=0.298 Sum_probs=77.4
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEeccccccee-EEEEEecCCCEEEEEecCCcEEEEEee
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVN-KVSFHYVESNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~l~~~~~d~~i~i~d~~ 128 (330)
....+.-+.|+| .-+++|.+..+|.+.+..+. .+.+-++.-+...++ +++|.| +|++|++|-.||+|++.|..
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEcc
Confidence 344468899999 99999999999999998876 355666766667777 999999 89999999999999999999
Q ss_pred cCceeeeee-cCCCCeEEEEEcC
Q psy6213 129 CQESTKIFH-SNTESVRDVEFNP 150 (330)
Q Consensus 129 ~~~~~~~~~-~~~~~v~~~~~~~ 150 (330)
++..+..+. ....+|.++-|.+
T Consensus 93 ~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 KGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCceeccccccccchheeeccc
Confidence 988776632 2456788888874
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0013 Score=58.50 Aligned_cols=148 Identities=8% Similarity=0.032 Sum_probs=87.9
Q ss_pred CCeEEEEEcCCCCcEEEEEe-----cCC--cEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC--------
Q psy6213 141 ESVRDVEFNPHSPYAFASVS-----ENG--TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD-------- 205 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~-----~dg--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------- 205 (330)
..+.+.+++|+++.+.++.. .|. .|.+++.. +.......+ .....-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence 45788999999996554442 233 45555643 222222222 237889999998877776532
Q ss_pred ----CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEE---EEccCCCccc---eEee-cCCCC
Q psy6213 206 ----KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNV---WDIRRPYIPL---ASFT-EHKDV 274 (330)
Q Consensus 206 ----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i---~d~~~~~~~~---~~~~-~~~~~ 274 (330)
+.+.+.++..+.... .....|..+.|||||..+++.. ++.|++ -....+...+ ..+. .-...
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 234333444432211 3356799999999999866654 678877 3333333111 1122 22334
Q ss_pred eEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 275 VSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 275 v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+.++.|.+++.++ .+..++.-.+|.
T Consensus 499 ~~~l~W~~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 499 AVSLDWRTGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred cccceEecCCEEE-EEecCCCCceEE
Confidence 6889999988855 556666666665
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0098 Score=48.05 Aligned_cols=219 Identities=16% Similarity=0.168 Sum_probs=123.2
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee------
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF------ 136 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------ 136 (330)
.++.|+.|+.+| +.+++.... ....... +...|..+...| +-+.+++-+ |+.++++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~--~~~~~i~--~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDP--SKPTRIL--KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCC--ccceeEe--ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 678899999888 899998331 2222222 223499999998 666666655 599999998765443311
Q ss_pred --------ecCCCCeEEEE--EcCCCCcEEEEEecCCcEEEEecCCCc----cceeeeccCCCCeEEEEEcCCCCEEEEE
Q psy6213 137 --------HSNTESVRDVE--FNPHSPYAFASVSENGTIQQWDVRRPE----KCFYQFTAHSGPIFACDWHPEHAWLATA 202 (330)
Q Consensus 137 --------~~~~~~v~~~~--~~~~~~~~~~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 202 (330)
......+...+ -...+...++ ......|.+|...... ...+.+. -...+.+++|. ++.++.|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEE
Confidence 11223344444 1233333344 4445588888876531 2334443 45778899998 5677777
Q ss_pred ecCCcEEEEeCCCCccccceec------------cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec
Q psy6213 203 SRDKTIKVWDLSIKPSLEYSIN------------TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE 270 (330)
Q Consensus 203 ~~dg~i~i~d~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 270 (330)
..+ ...+.|+.++........ ...++..+... ++++ +.+. +..-.+.|..........+.-
T Consensus 155 ~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~-Ll~~----~~~g~fv~~~G~~~r~~~i~W 227 (275)
T PF00780_consen 155 TSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEF-LLCY----DNIGVFVNKNGEPSRKSTIQW 227 (275)
T ss_pred eCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceE-EEEe----cceEEEEcCCCCcCcccEEEc
Confidence 754 588899986633211111 11233344443 3454 3332 445555555433221123332
Q ss_pred CCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 271 HKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 271 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
...+.++++. ..+|+..+.+ .|.||+...
T Consensus 228 -~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~ 256 (275)
T PF00780_consen 228 -SSAPQSVAYS--SPYLIAFSSN-SIEVRSLET 256 (275)
T ss_pred -CCchhEEEEE--CCEEEEECCC-EEEEEECcC
Confidence 3456677773 4577776664 499997553
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.9e-05 Score=39.51 Aligned_cols=37 Identities=38% Similarity=0.780 Sum_probs=32.6
Q ss_pred ceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEe
Q psy6213 176 CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212 (330)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 212 (330)
+...+..|...+.++.|++++.++++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556667888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0065 Score=48.25 Aligned_cols=150 Identities=12% Similarity=0.085 Sum_probs=92.0
Q ss_pred CeEEEEEcCCCCcEEEEEe--cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEe-CCCCcc
Q psy6213 142 SVRDVEFNPHSPYAFASVS--ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD-LSIKPS 218 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~ 218 (330)
.+.+.+++++++.+.+... ....++++... ........ ...+....|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 6889999999985444442 33345555443 32222222 33788889999987777766666667763 233322
Q ss_pred cc--ceeccc-cceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc--------cceEeecCCCCeEEEEEecCCCEE
Q psy6213 219 LE--YSINTI-ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI--------PLASFTEHKDVVSGLAWRGDPQLF 287 (330)
Q Consensus 219 ~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l 287 (330)
.. ...... ..|+.+.+||||..+++......++.|.+--+..... +..........+.+++|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 11 111112 2899999999999977776422467788776542211 112222334678999999998877
Q ss_pred EEeecCCe
Q psy6213 288 IASSRVSI 295 (330)
Q Consensus 288 ~s~~~dg~ 295 (330)
+.+...+.
T Consensus 181 V~~~~~~~ 188 (253)
T PF10647_consen 181 VLGRSAGG 188 (253)
T ss_pred EEeCCCCC
Confidence 77665543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.013 Score=47.42 Aligned_cols=228 Identities=10% Similarity=0.069 Sum_probs=122.7
Q ss_pred CCCeeecC--CCeEEEEEcCC-cceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeE
Q psy6213 15 DNGLAQPS--RNVFKIFLIKD-TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQER 91 (330)
Q Consensus 15 ~~~~~~~g--d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 91 (330)
.++.+..| +| +.+++... ......... .+|..+...| +-+.|++-+ |+.+.++++..........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~---------~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL---------SSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeec---------ceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccc
Confidence 45565555 55 89999832 222222111 1168888888 666665554 5999999987632222110
Q ss_pred E-----------ecccccceeEEE-EEecCCCEEEEEecCCcEEEEEeecC-----ceeeeeecCCCCeEEEEEcCCCCc
Q psy6213 92 V-----------FNDHKRTVNKVS-FHYVESNWLISGSQDGTMRLFDIRCQ-----ESTKIFHSNTESVRDVEFNPHSPY 154 (330)
Q Consensus 92 ~-----------~~~~~~~i~~i~-~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~ 154 (330)
. .......+..++ -....+...++......|.+|..... +..+.+. -...+.+++|.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~--- 149 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN--- 149 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC---
Confidence 0 111223344444 11123333444444568999988753 3445554 4578899999943
Q ss_pred EEEEEecCCcEEEEecCCCccceeeecc------------CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccce
Q psy6213 155 AFASVSENGTIQQWDVRRPEKCFYQFTA------------HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYS 222 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 222 (330)
.++.|.. ....+.|+.++ .....+.. ...++..+... ++.+|++- |..-.+.|..........
T Consensus 150 ~i~v~~~-~~f~~idl~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r~~~ 224 (275)
T PF00780_consen 150 KICVGTS-KGFYLIDLNTG-SPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSRKST 224 (275)
T ss_pred EEEEEeC-CceEEEecCCC-CceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCcccE
Confidence 4666654 45888998863 22222211 11233333333 45555543 334444454433222233
Q ss_pred eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec
Q psy6213 223 INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE 270 (330)
Q Consensus 223 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 270 (330)
..-...+..+++. .+|+++.. ++.|.||++.+++. ++.+..
T Consensus 225 i~W~~~p~~~~~~--~pyli~~~----~~~iEV~~~~~~~l-vQ~i~~ 265 (275)
T PF00780_consen 225 IQWSSAPQSVAYS--SPYLIAFS----SNSIEVRSLETGEL-VQTIPL 265 (275)
T ss_pred EEcCCchhEEEEE--CCEEEEEC----CCEEEEEECcCCcE-EEEEEC
Confidence 3334566666663 45655554 67799999999976 666654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0034 Score=41.81 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=64.6
Q ss_pred eEEEEE---cCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc
Q psy6213 143 VRDVEF---NPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL 219 (330)
Q Consensus 143 v~~~~~---~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 219 (330)
|+++++ ..+|..-|++|++|..|++|+-. ..+..+. ....++++.-... ..|+.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcce---
Confidence 445554 45666679999999999999854 3455555 3466778877665 56999999999999986332
Q ss_pred cceeccccceEEEEEcC-C--CC-eEEEEeecccCCeEE
Q psy6213 220 EYSINTIASVSRIKWRP-Q--RK-FHLASCSLVVDSSVN 254 (330)
Q Consensus 220 ~~~~~~~~~v~~~~~~~-~--~~-~l~~~~~~~~~~~i~ 254 (330)
.........+.++.+.. + |. .|+++-+ +|.|-
T Consensus 74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~Gws---nGkve 109 (111)
T PF14783_consen 74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWS---NGKVE 109 (111)
T ss_pred eeeeccCCCeEEEEEEcCCCCCceEEEEEec---CCeEE
Confidence 22333344455555433 3 32 3455544 77764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.7e-05 Score=39.09 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=32.2
Q ss_pred ceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 265 LASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 265 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 556677888999999999999999999999999994
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.025 Score=48.90 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=71.8
Q ss_pred eeeeeeccc----CCcEEEEEcCCCcEEEEECCC--CCCCceeEEecc-ccc----ceeEEEEEecCCCEEEEEecCCcE
Q psy6213 54 CNDVAWSCI----EENHIATGATNGAVVVWNLGQ--ISRSKQERVFND-HKR----TVNKVSFHYVESNWLISGSQDGTM 122 (330)
Q Consensus 54 v~~~~~~~~----~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~-~~~----~i~~i~~~~~~~~~l~~~~~d~~i 122 (330)
|..+.|.|. ...+||+-. ...|.+|.+.. .+..+....... ... --..+.|+| ....|++-.....-
T Consensus 59 V~GlsW~P~~~~~~paLLAVQH-kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvS 136 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQH-KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVS 136 (671)
T ss_pred eeeeeecCcccCCCCceEEEec-cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCcee
Confidence 688999982 234566554 56899999863 222222222111 111 234678999 67777766655444
Q ss_pred EEEEeecCce--eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecC
Q psy6213 123 RLFDIRCQES--TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR 171 (330)
Q Consensus 123 ~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 171 (330)
.+++++.... ...+ ...+.|.|.+|.+||++++++.+..=.-++||-.
T Consensus 137 V~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 5666654332 2233 3567899999999999877777766667888854
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.024 Score=47.07 Aligned_cols=241 Identities=11% Similarity=0.045 Sum_probs=112.5
Q ss_pred cceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc--CCcEEEEEcC-C--------
Q psy6213 6 PVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI--EENHIATGAT-N-------- 73 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~-d-------- 73 (330)
.-++|+|.|||+++++. .|.|++++ ..+.....+.........-......++++|+ ...+|.+... .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999998888 99999999 4444311111110111111233588899882 2333333322 1
Q ss_pred CcEEEEECCCCC-C---Cc-eeEEecc---cccceeEEEEEecCCCEEEEEecCC-------------cEEEEEeecCc-
Q psy6213 74 GAVVVWNLGQIS-R---SK-QERVFND---HKRTVNKVSFHYVESNWLISGSQDG-------------TMRLFDIRCQE- 131 (330)
Q Consensus 74 g~i~iw~~~~~~-~---~~-~~~~~~~---~~~~i~~i~~~~~~~~~l~~~~~d~-------------~i~i~d~~~~~- 131 (330)
..|.-|...... . .+ .+..+.. ....-..|.|.| ++.+.++.+..+ .|.-.+.. ++
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 134444443310 0 11 1111122 234456799998 777666665432 23222322 11
Q ss_pred ------------eeeeeecCCCCeEEEEEcCC-CCcEEEE-EecCCcEEEEecCCCc-----------------------
Q psy6213 132 ------------STKIFHSNTESVRDVEFNPH-SPYAFAS-VSENGTIQQWDVRRPE----------------------- 174 (330)
Q Consensus 132 ------------~~~~~~~~~~~v~~~~~~~~-~~~~~~~-~~~dg~i~i~d~~~~~----------------------- 174 (330)
....+...-.....++|+|. +. ++++ .+.++.=.|.-++.+.
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 01111111223567899998 54 3332 1222222222222110
Q ss_pred -----cceeeeccCCCCeEEEEEcC-------CCCEEEEEecCCcEEEEeCCCCcccc---ce-eccccceEEEEEcCCC
Q psy6213 175 -----KCFYQFTAHSGPIFACDWHP-------EHAWLATASRDKTIKVWDLSIKPSLE---YS-INTIASVSRIKWRPQR 238 (330)
Q Consensus 175 -----~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~---~~-~~~~~~v~~~~~~~~~ 238 (330)
.+...+..| ..+..+.|.+ .|.+|++.-..+.|....+....... .. .....++..+++.|||
T Consensus 239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 122223333 4566666654 35566666666778888776442211 11 1233478999999999
Q ss_pred CeEEEEeecccCCeEE
Q psy6213 239 KFHLASCSLVVDSSVN 254 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~ 254 (330)
..+++.. .+|.|+
T Consensus 318 ~Lyv~~d---~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDD---SDGKIY 330 (331)
T ss_dssp EEEEEE----TTTTEE
T ss_pred eEEEEEC---CCCeEe
Confidence 8644444 366654
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=54.10 Aligned_cols=140 Identities=11% Similarity=0.125 Sum_probs=81.4
Q ss_pred EEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecc-ccceEEE-
Q psy6213 155 AFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRI- 232 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~- 232 (330)
++...+.+|.|+-++++.-....+.-.-+...-.-+ .-+..+++|+.+|.|.+|.............. ...+.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 355567788888888775222222212122221111 23567999999999999988743222222111 2222222
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCC-CCeEEEEEecCCCEEEEe--ecCCeEeeeec
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK-DVVSGLAWRGDPQLFIAS--SRVSIIPRAKN 301 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~--~~dg~i~iw~~ 301 (330)
.--.++.+ ..++. .+|.|+.|++.-.+. +.....|. .++..+.....+++++.+ |.|..++.|..
T Consensus 109 p~~~~~~~-~c~~~--~dg~ir~~n~~p~k~-~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 109 PNGRDSSL-GCVGA--QDGRIRACNIKPNKV-LGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccccccce-eEEec--cCCceeeeccccCce-eeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 22223334 44444 599999999987765 55556666 566666666667777777 77777888863
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.021 Score=45.05 Aligned_cols=164 Identities=9% Similarity=0.102 Sum_probs=108.3
Q ss_pred cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC-CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCC
Q psy6213 94 NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN-TESVRDVEFNPHSPYAFASVSENGTIQQWDVRR 172 (330)
Q Consensus 94 ~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~ 172 (330)
.+....+.++.|+| +.+.|++......-.++=...|+.+.++... -.....+.+..++. +.++--.++.+.++.+..
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEcC
Confidence 34456699999999 6666666666666666666678888776532 23345677887776 355556678888877665
Q ss_pred Cccce---------eeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccce---ec-------cccceEEEE
Q psy6213 173 PEKCF---------YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYS---IN-------TIASVSRIK 233 (330)
Q Consensus 173 ~~~~~---------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~-------~~~~v~~~~ 233 (330)
....+ ......+...-.++|.|....|..+-+..-+.||........... .. .-..+.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 32211 111112456778999999999998888888888887654321110 00 124578889
Q ss_pred EcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 234 WRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
|++....+++-+. +++.+.-.|....
T Consensus 240 ~~~~~~~LLVLS~--ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSD--ESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEec--CCceEEEEecCCC
Confidence 9987777777776 6788887777654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0094 Score=53.22 Aligned_cols=147 Identities=8% Similarity=0.075 Sum_probs=76.0
Q ss_pred CCcEEEEEcCCC-----cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC-----------------
Q psy6213 63 EENHIATGATNG-----AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG----------------- 120 (330)
Q Consensus 63 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~----------------- 120 (330)
++...+.|+.++ .+..||..+. .......+....... +++.. ++.+.+.||.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~-~W~~~~~mp~~r~~~-~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDD-KWKMLPDMPIALSSY-GMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCC-eEEECCCCCcccccc-cEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence 677888888764 3778988762 122222222111111 22222 677778787653
Q ss_pred ------cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecC------CcEEEEecCC-C-ccceeeeccCCCC
Q psy6213 121 ------TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN------GTIQQWDVRR-P-EKCFYQFTAHSGP 186 (330)
Q Consensus 121 ------~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d------g~i~i~d~~~-~-~~~~~~~~~~~~~ 186 (330)
.+..||..+.+-...-.........-+..-++. +++.|+.+ ..+..||..+ . -..+..+......
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEEEECCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 467788766543221111111111111222344 67777654 2367899886 2 2222333322222
Q ss_pred eEEEEEcCCCCEEEEEecCC--cEEEEeCCCC
Q psy6213 187 IFACDWHPEHAWLATASRDK--TIKVWDLSIK 216 (330)
Q Consensus 187 i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~ 216 (330)
.....+ +++..++|+.+| .+..||..+.
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCcccc
Confidence 223333 678889999888 6777777665
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.016 Score=51.72 Aligned_cols=216 Identities=9% Similarity=0.039 Sum_probs=101.7
Q ss_pred eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC------CcEEEEECCCCCCCceeEEeccccc
Q psy6213 25 VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN------GAVVVWNLGQISRSKQERVFNDHKR 98 (330)
Q Consensus 25 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~ 98 (330)
.+..||..+++.......+.... . .+++.. ++...+.|+.+ ..+..||..+. .......+.....
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~---~---~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n-~W~~~~~m~~~R~ 343 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII---N---YASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENK-IHVELPPMIKNRC 343 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc---c---eEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCC-eEeeCCCCcchhh
Confidence 46678887766544332222111 0 122222 66777777754 24677887662 1222211111111
Q ss_pred ceeEEEEEecCCCEEEEEecCC-----cEEEEEeecCceee--eeecCCCCeEEEEEcCCCCcEEEEEecCC--------
Q psy6213 99 TVNKVSFHYVESNWLISGSQDG-----TMRLFDIRCQESTK--IFHSNTESVRDVEFNPHSPYAFASVSENG-------- 163 (330)
Q Consensus 99 ~i~~i~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~dg-------- 163 (330)
. .+++.. ++.+.+.||.++ .+..||..+.+-.. .+.........+. -++. +++.|+.++
T Consensus 344 ~-~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~-IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 344 R-FSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQY-IYIIGGRTEHIDYTSVH 417 (557)
T ss_pred c-eeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCE-EEEEeCCCccccccccc
Confidence 1 123322 678888888764 47889987654322 1111111111222 2344 677777542
Q ss_pred ---------------cEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEecCC------cEEEEeCCC-Ccc-c
Q psy6213 164 ---------------TIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLATASRDK------TIKVWDLSI-KPS-L 219 (330)
Q Consensus 164 ---------------~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~~~-~ 219 (330)
.+..||..+..= .+..+....... +++. -+++..+.|+.++ .+..||..+ .+= .
T Consensus 418 ~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~ 495 (557)
T PHA02713 418 HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL 495 (557)
T ss_pred ccccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE
Confidence 477788776321 111111111111 1222 2567777777542 467899886 311 1
Q ss_pred cceecc-ccceEEEEEcCCCCeEEEEeecccCC--eEEEEEccCCC
Q psy6213 220 EYSINT-IASVSRIKWRPQRKFHLASCSLVVDS--SVNVWDIRRPY 262 (330)
Q Consensus 220 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~~--~i~i~d~~~~~ 262 (330)
....+. ......+.+ +++ +.+.|+ .++ .+..||..+.+
T Consensus 496 ~~~m~~~r~~~~~~~~--~~~-iyv~Gg--~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 496 ITTTESRLSALHTILH--DNT-IMMLHC--YESYMLQDTFNVYTYE 536 (557)
T ss_pred ccccCcccccceeEEE--CCE-EEEEee--ecceeehhhcCccccc
Confidence 111111 112222222 444 555555 466 67778877665
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.029 Score=44.29 Aligned_cols=160 Identities=11% Similarity=0.140 Sum_probs=106.5
Q ss_pred ccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 5 SPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 5 ~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
+.|.++.|+|+.+. ++.. ...-.|+=...|++.....+..-.. ...++|.. ++.+.++--.++.+.++.++
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D------pE~Ieyig-~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD------PETIEYIG-GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC------hhHeEEec-CCEEEEEehhcceEEEEEEc
Confidence 34899999999998 6666 6666666666788888877665222 25678876 77777777778888888776
Q ss_pred CCCCCcee----EEe---cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeee---eecC-------CCCeEE
Q psy6213 83 QISRSKQE----RVF---NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI---FHSN-------TESVRD 145 (330)
Q Consensus 83 ~~~~~~~~----~~~---~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~-------~~~v~~ 145 (330)
........ ..+ .........++|.| ..+.|+.+-+-.-+.+|..+....... ...+ -..+.+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 53211111 111 11256678999999 666777777777788887763321111 1111 134677
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEecCC
Q psy6213 146 VEFNPHSPYAFASVSENGTIQQWDVRR 172 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~i~d~~~ 172 (330)
+.|++..+.+++-+.+++.+.-.|..-
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCC
Confidence 889988887888888888888888763
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00076 Score=61.57 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=75.9
Q ss_pred CCCEEEEEecCCcEEEEeCCCC-ccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCC
Q psy6213 195 EHAWLATASRDKTIKVWDLSIK-PSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKD 273 (330)
Q Consensus 195 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 273 (330)
.+..++.|+..|.+-..|.... ..........++|++++|+.+|..++++-+ +|.|.+||+..++. ++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~---~G~V~v~D~~~~k~-l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG---DGHVTVWDMHRAKI-LKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC---CCcEEEEEccCCcc-eeeeeecCC
Confidence 4667899999999999998764 223344445789999999999998666665 99999999998765 777777776
Q ss_pred CeEEEE---EecCCCEEEEeecCCeEeeeec
Q psy6213 274 VVSGLA---WRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 274 ~v~~~~---~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
+.+++- +..++..++++...|. +|+.
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 666554 4446667888877776 6653
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0059 Score=56.46 Aligned_cols=146 Identities=12% Similarity=0.135 Sum_probs=94.5
Q ss_pred ceeEEEEEecCCCEEEE--EecCCcEEEEEeecCceee-----ee------ecCCCCeEEEEEcCCCCcEEEEEecCCcE
Q psy6213 99 TVNKVSFHYVESNWLIS--GSQDGTMRLFDIRCQESTK-----IF------HSNTESVRDVEFNPHSPYAFASVSENGTI 165 (330)
Q Consensus 99 ~i~~i~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~-----~~------~~~~~~v~~~~~~~~~~~~~~~~~~dg~i 165 (330)
++..+...+ |....++ .+.+-.|..||+++-..-. -+ ........++.|+|.-....++...|+.|
T Consensus 102 pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 455555555 5444333 3334478999987532211 11 11233456888999876567778889999
Q ss_pred EEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc---eeccccceEEEEEcCCCCeEE
Q psy6213 166 QQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY---SINTIASVSRIKWRPQRKFHL 242 (330)
Q Consensus 166 ~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~ 242 (330)
++..+.........+. .....++++|+|.|+.+++|-..|++.-|...-...... .......|.+++|-....+++
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 9988775333333333 456789999999999999999999999997654311111 111257899999998888765
Q ss_pred EEee
Q psy6213 243 ASCS 246 (330)
Q Consensus 243 ~~~~ 246 (330)
+-+.
T Consensus 260 vy~n 263 (1405)
T KOG3630|consen 260 VYGN 263 (1405)
T ss_pred Eecc
Confidence 5443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.044 Score=43.03 Aligned_cols=233 Identities=12% Similarity=0.105 Sum_probs=133.2
Q ss_pred eeeeeecccCCcEEEEEcCCCc-EEEEECCCCCCCceeEEeccccc--ceeEEEEEecCCCEEEEEecC-----CcEEEE
Q psy6213 54 CNDVAWSCIEENHIATGATNGA-VVVWNLGQISRSKQERVFNDHKR--TVNKVSFHYVESNWLISGSQD-----GTMRLF 125 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~l~~~~~d-----~~i~i~ 125 (330)
...++|+|....-++.+-.-|+ ..++|... .+...++...++ -.-.=.|+| ++.+|...-.| |.|-+|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~---~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNG---AQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCC---CcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEE
Confidence 3678888866677777777776 45788776 333333221111 111235887 88888776443 789999
Q ss_pred EeecC-ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEE--------------------EEecCCCcccee--eec-
Q psy6213 126 DIRCQ-ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQ--------------------QWDVRRPEKCFY--QFT- 181 (330)
Q Consensus 126 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~--------------------i~d~~~~~~~~~--~~~- 181 (330)
|.+.+ +.+.++..|.-....+.+.+||+. ++.+. |-|. +.|..+ +..+. ++.
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrt-lvvan--GGIethpdfgR~~lNldsMePSlvlld~at-G~liekh~Lp~ 221 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRT-LVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAAT-GNLIEKHTLPA 221 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcE-EEEeC--CceecccccCccccchhhcCccEEEEeccc-cchhhhccCch
Confidence 98754 346667777777788999999994 54432 3233 333222 11111 122
Q ss_pred -cCCCCeEEEEEcCCCCEEEEEecCCcE-----EEEeCCCCcccc-------ceeccccceEEEEEcCCCCeEEEEeecc
Q psy6213 182 -AHSGPIFACDWHPEHAWLATASRDKTI-----KVWDLSIKPSLE-------YSINTIASVSRIKWRPQRKFHLASCSLV 248 (330)
Q Consensus 182 -~~~~~i~~~~~~~~~~~l~~~~~dg~i-----~i~d~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 248 (330)
.+.-.|..++..+||+.++.+-..|.- .+=-...++.+. ........+-+++.+.+...+.+++-
T Consensus 222 ~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP-- 299 (366)
T COG3490 222 SLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP-- 299 (366)
T ss_pred hhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC--
Confidence 234568888888888766655443321 000011111111 11112345778888877776566655
Q ss_pred cCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 249 VDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 249 ~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
..+...+||..++.. +.... -.....++- ...-++..+.+|.+.+++.
T Consensus 300 ~GN~~vi~da~tG~v-v~~a~--l~daaGva~--~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 300 RGNRAVIWDAATGAV-VSEAA--LPDAAGVAA--AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CCCeEEEEEcCCCcE-Eeccc--cccccccee--ccCceEEecCCceEEeccc
Confidence 678889999999975 22211 112233333 3344666778898888753
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.048 Score=48.82 Aligned_cols=178 Identities=11% Similarity=0.080 Sum_probs=94.9
Q ss_pred CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC-C-----cEEEEECCCCCCCceeEEecccc
Q psy6213 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN-G-----AVVVWNLGQISRSKQERVFNDHK 97 (330)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-----~i~iw~~~~~~~~~~~~~~~~~~ 97 (330)
..+..||..+++............ -.+++.. ++...++|+.| | .+..||..... +.....+....
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~------~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W~~~a~M~~~R 371 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC------RVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-WTPVAPMNTKR 371 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc------cccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc-eeccCCccCcc
Confidence 478889988876555444443222 1445554 57888899988 3 46678877621 22222222221
Q ss_pred cceeEEEEEecCCCEEEEEecCCc-----EEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC------cEE
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDGT-----MRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG------TIQ 166 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg------~i~ 166 (330)
... +++. -++.+.++||.||. +..||..+.+-...-. ............-+..+.++|+.++ .+.
T Consensus 372 ~~~-~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve 447 (571)
T KOG4441|consen 372 SDF-GVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVE 447 (571)
T ss_pred ccc-eeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEE
Confidence 111 2222 37889999999864 6777776554322111 1112223332222333788887554 467
Q ss_pred EEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEecCCc-----EEEEeCCCC
Q psy6213 167 QWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLATASRDKT-----IKVWDLSIK 216 (330)
Q Consensus 167 i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~ 216 (330)
.||..++.= .+..+..-..... ++.- ++.+.+.|+.|+. +..||..+.
T Consensus 448 ~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 448 CYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred EEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCC
Confidence 788776321 1111111111111 2222 5778888887763 777887765
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.13 Score=47.43 Aligned_cols=240 Identities=9% Similarity=0.097 Sum_probs=117.1
Q ss_pred ceEEEEeeCCCeeecC---C----CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC------
Q psy6213 7 VHKHGLKADNGLAQPS---R----NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN------ 73 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g---d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------ 73 (330)
+..+.++|||++++.+ + ..|++-|+.+++..... +. .. -..++|.+ +++.|+....+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~-----~~---~~~~~w~~-D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LD-----NV---EPSFVWAN-DSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-cc-----Cc---ceEEEEee-CCCEEEEEEecCCCCCC
Confidence 6678899999995554 2 35788888877532111 10 01 14589998 66655544332
Q ss_pred CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec---CCcEEEEEee--cCceeeeeecCCCCeEEEEE
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ---DGTMRLFDIR--CQESTKIFHSNTESVRDVEF 148 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~ 148 (330)
..|..+++.+... .....+........-..+.+.++++++..+. ++.+.+++.. +++....+.........+.
T Consensus 199 ~~v~~h~lgt~~~-~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 276 (686)
T PRK10115 199 YQVWRHTIGTPAS-QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD- 276 (686)
T ss_pred CEEEEEECCCChh-HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-
Confidence 3577788877311 2222333322333322233336666554433 4578888853 3332222322222223222
Q ss_pred cCCCCcEEEEEec---CCcEEEEecCCCccceeeeccC-C-CCeEEEEEcCCCCEEEEEecCCcEEEE--eCCCCccccc
Q psy6213 149 NPHSPYAFASVSE---NGTIQQWDVRRPEKCFYQFTAH-S-GPIFACDWHPEHAWLATASRDKTIKVW--DLSIKPSLEY 221 (330)
Q Consensus 149 ~~~~~~~~~~~~~---dg~i~i~d~~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~ 221 (330)
+..+. +++.... ...|...++..... ...+..+ . ..+..+.+. .+.++++...+|.-+++ |.... ....
T Consensus 277 ~~~~~-ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~ 352 (686)
T PRK10115 277 HYQHR-FYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIG 352 (686)
T ss_pred eCCCE-EEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEE
Confidence 33333 3333322 22344445543222 2333334 3 367778887 34556666667765554 44322 2221
Q ss_pred ee-ccccceEEEEEc--CCCC-eEEEEeecccCCeEEEEEccCCC
Q psy6213 222 SI-NTIASVSRIKWR--PQRK-FHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 222 ~~-~~~~~v~~~~~~--~~~~-~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
.. .....+..+.++ +++. .++...+...-+.+..+|+.+++
T Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 353 IAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 11 212223333444 4444 33334333345788899987764
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=49.89 Aligned_cols=107 Identities=17% Similarity=0.253 Sum_probs=71.0
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCC-C
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNT-E 141 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~ 141 (330)
.+..+++|+.+|.|.+|+.... +........-...|.++.-.-.++.+..+++.||.|+.|++.-.+.+...-.|. .
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~--g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLE--GAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred cCceEEeecccceEEEecCCcc--chHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence 4677899999999999988642 222222222334444444333356689999999999999999887777666666 4
Q ss_pred CeEEEEEcCCCCcEEEEE--ecCCcEEEEecCC
Q psy6213 142 SVRDVEFNPHSPYAFASV--SENGTIQQWDVRR 172 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~--~~dg~i~i~d~~~ 172 (330)
++.....+..++ ++..+ +.|..++.|++..
T Consensus 147 ~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 147 SGEELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CcceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 555555555555 35555 6677777777764
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.037 Score=49.52 Aligned_cols=195 Identities=11% Similarity=0.123 Sum_probs=102.0
Q ss_pred ccceEEEEeeCCCeeecC-C------CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCc--
Q psy6213 5 SPVHKHGLKADNGLAQPS-R------NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA-- 75 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g-d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-- 75 (330)
..-.++++..+--|+++| + ..+..||...++............ . .+++- -++...|+|+.||.
T Consensus 323 r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~---~---~~v~~--l~g~iYavGG~dg~~~ 394 (571)
T KOG4441|consen 323 RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS---D---FGVAV--LDGKLYAVGGFDGEKS 394 (571)
T ss_pred cccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc---c---ceeEE--ECCEEEEEeccccccc
Confidence 334455555443347777 6 467788888877554333322211 1 11222 27888999999864
Q ss_pred ---EEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC------cEEEEEeecCceeee--eecCCCCeE
Q psy6213 76 ---VVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG------TMRLFDIRCQESTKI--FHSNTESVR 144 (330)
Q Consensus 76 ---i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~--~~~~~~~v~ 144 (330)
+..||..+ ++......... .........-++.+.++||.++ ++..||..+.+.... +.......
T Consensus 395 l~svE~YDp~~-~~W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~- 469 (571)
T KOG4441|consen 395 LNSVECYDPVT-NKWTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF- 469 (571)
T ss_pred cccEEEecCCC-CcccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-
Confidence 67788766 22333222222 2222222223688888888654 567788776654322 22111111
Q ss_pred EEEEcCCCCcEEEEEecCCc-----EEEEecCCCccceee-eccCCCCeEEEEEcCCCCEEEEEecCCc-----EEEEeC
Q psy6213 145 DVEFNPHSPYAFASVSENGT-----IQQWDVRRPEKCFYQ-FTAHSGPIFACDWHPEHAWLATASRDKT-----IKVWDL 213 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~dg~-----i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~ 213 (330)
.++.. ++ .+++.|+.|+. |..||..+..-.... .......+....+ ++...++|+.||. +..||.
T Consensus 470 g~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 470 GVAVL-NG-KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred eEEEE-CC-EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCC
Confidence 12222 23 37888887763 677888763221111 2212222222222 5677888887764 666766
Q ss_pred CCC
Q psy6213 214 SIK 216 (330)
Q Consensus 214 ~~~ 216 (330)
.+.
T Consensus 546 ~~d 548 (571)
T KOG4441|consen 546 ETD 548 (571)
T ss_pred CCC
Confidence 554
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.054 Score=42.54 Aligned_cols=180 Identities=12% Similarity=0.157 Sum_probs=107.6
Q ss_pred ceEEEEeeCCCe-eecC---CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 7 VHKHGLKADNGL-AQPS---RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
-..+.|..+|.+ -++| ...|+.+|+++++......++..- |. ..++.. ++.+....-.++...+||..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~-----Fg-EGit~~--~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY-----FG-EGITIL--GDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------E-EEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc-----cc-eeEEEE--CCEEEEEEecCCeEEEEccc
Confidence 345777778888 7888 558999999999887766555321 11 334443 45666666788999999998
Q ss_pred CCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec--CC---CCeEEEEEcCCCCcEEE
Q psy6213 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS--NT---ESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~~~~ 157 (330)
+ .+.+..+. ..+.=..++. +++.|+.......++.+|.++.+....+.. .. ..++.+.|. +|. +.+
T Consensus 119 t---l~~~~~~~-y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyA 189 (264)
T PF05096_consen 119 T---LKKIGTFP-YPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYA 189 (264)
T ss_dssp T---TEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEE
T ss_pred c---ceEEEEEe-cCCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEE
Confidence 7 66666664 3356677772 455555555567899999887776665543 12 235556665 343 555
Q ss_pred EEecCCcEEEEecCCCccceeeec---------------cCCCCeEEEEEcCCCCEEEEEec
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFT---------------AHSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
-.-....|...|..+ +.....+. ....-.+.|++.|..+.|...+.
T Consensus 190 NVW~td~I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 190 NVWQTDRIVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeCCCCeEEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 555556666777766 33222210 11356899999997766655553
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.073 Score=43.21 Aligned_cols=275 Identities=9% Similarity=0.060 Sum_probs=122.3
Q ss_pred cccceEEEEeeCCCeeecC-CCeEEEEEcCC-cceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGLAQPS-RNVFKIFLIKD-TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
..++..|.|..+..-.++| .+.| +...+ |+--......... ...+...++.|.. ...+++| ..+ +.+...
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~--~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~ 87 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDN--PFDYHLNSISFDG--NEGWIVG-EPG-LLLHTT 87 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE-----S-------EEEEEEEET--TEEEEEE-ETT-EEEEES
T ss_pred CCceEEEEEecCCEEEEEecCCEE--EEECCCCccccccccCCCc--cceeeEEEEEecC--CceEEEc-CCc-eEEEec
Confidence 3578899999444447777 7653 44443 3332222222111 1122346777764 4455554 444 434444
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-eeeeecCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-TKIFHSNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
+.....+.+..-..-......+.... ++ ....++..|.|+.= .+.++. ..........+..+.-++++. +++++.
T Consensus 88 DgG~tW~~v~l~~~lpgs~~~i~~l~-~~-~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~-~vavs~ 163 (302)
T PF14870_consen 88 DGGKTWERVPLSSKLPGSPFGITALG-DG-SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGR-YVAVSS 163 (302)
T ss_dssp STTSS-EE----TT-SS-EEEEEEEE-TT-EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS--EEEEET
T ss_pred CCCCCcEEeecCCCCCCCeeEEEEcC-CC-cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCc-EEEEEC
Confidence 44222333221112223334444443 33 34444555554432 122322 222334456788888999998 355555
Q ss_pred cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCC-Ccc---cccee-ccccceEEEEEc
Q psy6213 161 ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI-KPS---LEYSI-NTIASVSRIKWR 235 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~---~~~~~-~~~~~v~~~~~~ 235 (330)
....+.-||.-...- ...-......|..+.|.|++.+.+++ ..|.|+.=+... .+. ..... .....+..++|.
T Consensus 164 ~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~ 241 (302)
T PF14870_consen 164 RGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYR 241 (302)
T ss_dssp TSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEES
T ss_pred cccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEec
Confidence 444455777543111 11122245789999999998765544 888888877222 111 11111 223458999999
Q ss_pred CCCCeEEEEeecccCCeEEEEEccCCCccceEee---cCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT---EHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
++++. .++++ .|.+. .....++. -+... .-...++.+.|.++.+ -...+.+|.|.-|
T Consensus 242 ~~~~~-wa~gg---~G~l~-~S~DgGkt-W~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 242 PPNEI-WAVGG---SGTLL-VSTDGGKT-WQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp SSS-E-EEEES---TT-EE-EESSTTSS--EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred CCCCE-EEEeC---CccEE-EeCCCCcc-ceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 99874 66664 66443 34444443 22221 2235688899976544 4446788888766
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.068 Score=42.04 Aligned_cols=234 Identities=11% Similarity=0.102 Sum_probs=128.8
Q ss_pred ceEEEEeeCCCe-eecC---CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC-----CcEE
Q psy6213 7 VHKHGLKADNGL-AQPS---RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN-----GAVV 77 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~ 77 (330)
-..|+|+|.-.. ++-. .....++|.+..+.........+... + -.=.||| ++.+|+..-.| |.|-
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf---y--GHGvfs~-dG~~LYATEndfd~~rGViG 143 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF---Y--GHGVFSP-DGRLLYATENDFDPNRGVIG 143 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee---e--cccccCC-CCcEEEeecCCCCCCCceEE
Confidence 345667776666 3333 44567778777655444332222110 0 2246888 99988876444 6799
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec------------------CCcEEEEEeecCceeeeee--
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ------------------DGTMRLFDIRCQESTKIFH-- 137 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~------------------d~~i~i~d~~~~~~~~~~~-- 137 (330)
+||... ....+..+..|.-.-..+.|.+ |++.++.+.. .-++.+.|..+++.+.+..
T Consensus 144 vYd~r~--~fqrvgE~~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp 220 (366)
T COG3490 144 VYDARE--GFQRVGEFSTHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP 220 (366)
T ss_pred EEeccc--ccceecccccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc
Confidence 999875 2566667777877788899997 8888887642 1124444544555443322
Q ss_pred --cCCCCeEEEEEcCCCCcEEEEEec-CCc----EEEEecCCCccceeeec-------cCCCCeEEEEEcCCCCEEEEEe
Q psy6213 138 --SNTESVRDVEFNPHSPYAFASVSE-NGT----IQQWDVRRPEKCFYQFT-------AHSGPIFACDWHPEHAWLATAS 203 (330)
Q Consensus 138 --~~~~~v~~~~~~~~~~~~~~~~~~-dg~----i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~ 203 (330)
.+.-.++.++..++|. +..|+. .|. --+.-...+++++.-+. .....|-+++.+.+..+++..+
T Consensus 221 ~~l~~lSiRHld~g~dgt--vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTS 298 (366)
T COG3490 221 ASLRQLSIRHLDIGRDGT--VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTS 298 (366)
T ss_pred hhhhhcceeeeeeCCCCc--EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEec
Confidence 1334578888888886 333321 111 00111111122222221 1234577888887655555544
Q ss_pred -cCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEc
Q psy6213 204 -RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258 (330)
Q Consensus 204 -~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~ 258 (330)
..+...+||..++....... -.....++-...| ++++.+ +|.+.++.-
T Consensus 299 P~GN~~vi~da~tG~vv~~a~--l~daaGva~~~~g--f~vssg---~G~~~~~s~ 347 (366)
T COG3490 299 PRGNRAVIWDAATGAVVSEAA--LPDAAGVAAAKGG--FAVSSG---QGRIIFYSR 347 (366)
T ss_pred CCCCeEEEEEcCCCcEEeccc--ccccccceeccCc--eEEecC---CceEEeccc
Confidence 55668899999984432211 1122233333333 355554 888888843
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0073 Score=51.25 Aligned_cols=141 Identities=13% Similarity=0.141 Sum_probs=95.9
Q ss_pred CCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCC-------EEEEEecCCcEEEEeCCCCcc--ccc
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHA-------WLATASRDKTIKVWDLSIKPS--LEY 221 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~--~~~ 221 (330)
+.+.++..+.....++-.|++. ++.+...+-+.. |+-+.+.|+.+ .-+.|-.|..|.-||.+-... +..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~-GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIER-GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeeccc-ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3444555666667789999998 677777776655 77777877543 234566788899999885432 111
Q ss_pred e----eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 222 S----INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 222 ~----~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
. ........|.+-..+|. ++.++ .+|.|++||- .+......+++-..+|..+..+.||++|+..+..-.+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~--IvvgS--~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGY--IVVGS--LKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLL 496 (644)
T ss_pred eeccccccccccceeeecCCce--EEEee--cCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEE
Confidence 1 11234566677667774 45555 6999999997 44443566788889999999999999988766544333
Q ss_pred e
Q psy6213 298 R 298 (330)
Q Consensus 298 i 298 (330)
+
T Consensus 497 i 497 (644)
T KOG2395|consen 497 I 497 (644)
T ss_pred E
Confidence 3
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.014 Score=49.49 Aligned_cols=145 Identities=16% Similarity=0.180 Sum_probs=97.1
Q ss_pred cCCCEEE-EEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCc------EEEEEecCCcEEEEecCCCccceeee
Q psy6213 108 VESNWLI-SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPY------AFASVSENGTIQQWDVRRPEKCFYQF 180 (330)
Q Consensus 108 ~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~~dg~i~i~d~~~~~~~~~~~ 180 (330)
++.++++ .|+....++-.|++.|+.+..+..+..- -+.|.|..+. .-++|-.+..|.-.|.+-.+..+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3555544 4566678888999999999998876654 5677775421 12345556667777877645333222
Q ss_pred ccCCCCeEEEEEcC----CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEE
Q psy6213 181 TAHSGPIFACDWHP----EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW 256 (330)
Q Consensus 181 ~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~ 256 (330)
+ .....+.-.|+. ...++++++..|.|++||.-..+...........|..+..+.+|++++++| ...+.+-
T Consensus 555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC----k~yllL~ 629 (776)
T COG5167 555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC----KNYLLLT 629 (776)
T ss_pred e-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee----cceEEEE
Confidence 2 122222233332 456899999999999999765544444455677899999999999999998 6778887
Q ss_pred Ecc
Q psy6213 257 DIR 259 (330)
Q Consensus 257 d~~ 259 (330)
|++
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 764
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.086 Score=41.70 Aligned_cols=273 Identities=11% Similarity=0.085 Sum_probs=147.8
Q ss_pred ceEEEEeeCCCeeecCCCeEEEEEcCCcceeeeec-eeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC
Q psy6213 7 VHKHGLKADNGLAQPSRNVFKIFLIKDTEFVETHN-LRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS 85 (330)
Q Consensus 7 v~~~~~s~~~~~~~~gd~~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 85 (330)
+..+.++.+--+++=.+.-++|.|+.+........ +.... ..-.|.- .|++..++..|.-+.+.|+.++.
T Consensus 89 ~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g--------yaygv~v-sGn~aYVadlddgfLivdvsdps 159 (370)
T COG5276 89 FADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG--------YAYGVYV-SGNYAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCc--------eEEEEEe-cCCEEEEeeccCcEEEEECCCCC
Confidence 44555554333333337789999998754332221 11100 2223333 68888888866678899999876
Q ss_pred CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec--CCCCeEEEEEcCCCCcEEEEEecCC
Q psy6213 86 RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS--NTESVRDVEFNPHSPYAFASVSENG 163 (330)
Q Consensus 86 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~dg 163 (330)
.......+......-..++.+ +++...+..|+-+.+.|+.+......+.. ....+.++..+++-. +++... -
T Consensus 160 sP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~--y~vvy~-e 233 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA--YLVVYD-E 233 (370)
T ss_pred CceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee--EEEEcc-c
Confidence 666666666666666777765 77888888899999999976543322211 223677777777654 333333 3
Q ss_pred cEEEEecCCCccceeeeccCCCCeEEE-EEcCCCCEEEEEecCCcEEEEeCCCCccccce--ecccc-ceEEEEEcCCCC
Q psy6213 164 TIQQWDVRRPEKCFYQFTAHSGPIFAC-DWHPEHAWLATASRDKTIKVWDLSIKPSLEYS--INTIA-SVSRIKWRPQRK 239 (330)
Q Consensus 164 ~i~i~d~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~-~v~~~~~~~~~~ 239 (330)
-+.+-|...+..+...-.-....+.++ .+.-.+++......+.-+.+-|+.+....... ....+ .-..+..+ +.
T Consensus 234 gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~ 311 (370)
T COG5276 234 GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GN 311 (370)
T ss_pred ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cC
Confidence 466777766432221111111222222 22224667777777777888888776432221 11111 22233322 22
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
++...- .....+-+....+. .-...+-...+.+.+.+-+.+.+.+...++-+.+|+.
T Consensus 312 y~yiad----kn~g~vV~~s~~s~-m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 312 YNYIAD----KNTGAVVDASPPSM-MDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred eeEecc----CCceEEEeCCChhh-cccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 222221 22444455544432 1111122222333344445668888888998988864
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.13 Score=42.86 Aligned_cols=229 Identities=10% Similarity=0.050 Sum_probs=107.8
Q ss_pred eeeeecccCCcEEEE-EcCCC--cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc
Q psy6213 55 NDVAWSCIEENHIAT-GATNG--AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE 131 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~-~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 131 (330)
+.=+|.+ +++.|+. +..|| .+.+.|+.+ .+..+...+.........++| +++.++-......|+-.|+++.+
T Consensus 39 ~~~~ft~-dG~kllF~s~~dg~~nly~lDL~t---~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 39 YQNCFTD-DGRKLLFASDFDGNRNLYLLDLAT---GEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp TS--B-T-TS-EEEEEE-TTSS-EEEEEETTT----EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--
T ss_pred cCCCcCC-CCCEEEEEeccCCCcceEEEEccc---CEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCc
Confidence 4456777 6655554 44455 466667776 343333332223344566777 56776655556789999999988
Q ss_pred eeeeeecCCCCeEEEEEcCCCCcEEEEEec-----------------------CCcEEEEecCCCccceeeeccCCCCeE
Q psy6213 132 STKIFHSNTESVRDVEFNPHSPYAFASVSE-----------------------NGTIQQWDVRRPEKCFYQFTAHSGPIF 188 (330)
Q Consensus 132 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------------dg~i~i~d~~~~~~~~~~~~~~~~~i~ 188 (330)
....+......+-...|..+.....+++.. ...|.-.|+++ ++. ..+-.....+.
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t-G~~-~~v~~~~~wlg 191 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT-GER-KVVFEDTDWLG 191 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---E-EEEEEESS-EE
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC-Cce-eEEEecCcccc
Confidence 777777666666566665332112333321 12344445554 332 22333456778
Q ss_pred EEEEcCCCCEEEEEecCCc-----EEEEeCCCCcc---ccceeccccceEEEEEcCCCCeEEEEeec--ccCCeEEEEEc
Q psy6213 189 ACDWHPEHAWLATASRDKT-----IKVWDLSIKPS---LEYSINTIASVSRIKWRPQRKFHLASCSL--VVDSSVNVWDI 258 (330)
Q Consensus 189 ~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~~~i~i~d~ 258 (330)
.+.|+|....+++=+..|- -|||-+++... ..........+..=-|.|||..+..-... ..+..|.-+|+
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 8999996555554443331 35665543321 11222234566777899999976553321 12446777788
Q ss_pred cCCCccceEeecCCCCeEEEEEecCCCEEEEeecC
Q psy6213 259 RRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 259 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
.+++. ..... ......+--++||++++-=+.|
T Consensus 272 ~t~~~-~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGER-RRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--E-EEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCc-eEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 87753 11111 1234566667899887765554
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.15 Score=43.31 Aligned_cols=78 Identities=12% Similarity=0.017 Sum_probs=49.8
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccc-cceEEEEEcC-----------------CCCeEEEEe
Q psy6213 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI-ASVSRIKWRP-----------------QRKFHLASC 245 (330)
Q Consensus 184 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~-----------------~~~~l~~~~ 245 (330)
...+.++..+|++++.++...=|.|.++|+..+..+....+.. ..+.-+.... ...+|++-.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 3457899999999999998888999999998875443333321 1111111100 122334444
Q ss_pred ecccCCeEEEEEccCCCc
Q psy6213 246 SLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 246 ~~~~~~~i~i~d~~~~~~ 263 (330)
. .-|.|.||.++.+..
T Consensus 387 p--rRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 387 P--RRGILEVWSMRQGPR 402 (415)
T ss_pred c--cCCeEEEEecCCCCE
Confidence 3 589999999988865
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.12 Score=41.96 Aligned_cols=228 Identities=14% Similarity=0.169 Sum_probs=104.2
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCC-CCceeEEeccc---ccceeEEEEEecCCCEEEEEecCCcEEEEEee
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQIS-RSKQERVFNDH---KRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~---~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~ 128 (330)
.+.+|.|.. ...-+++|.. +. |+...... ..+... .... .-...++.|. +...+++| ..+ +.+...+
T Consensus 18 ~l~dV~F~d-~~~G~~VG~~-g~--il~T~DGG~tW~~~~-~~~~~~~~~~l~~I~f~--~~~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 18 PLLDVAFVD-PNHGWAVGAY-GT--ILKTTDGGKTWQPVS-LDLDNPFDYHLNSISFD--GNEGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp -EEEEEESS-SS-EEEEETT-TE--EEEESSTTSS-EE------S-----EEEEEEEE--TTEEEEEE-ETT-EEEEESS
T ss_pred ceEEEEEec-CCEEEEEecC-CE--EEEECCCCccccccc-cCCCccceeeEEEEEec--CCceEEEc-CCc-eEEEecC
Confidence 358899984 5666666654 53 34443321 122221 1111 1235677775 34455544 444 3333334
Q ss_pred cCceeeeee---cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee-eeccCCCCeEEEEEcCCCCEEEEEec
Q psy6213 129 CQESTKIFH---SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY-QFTAHSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 129 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
.++.=..+. .-......+....++. ..+ ++..|. +|-....++.-+ ....-.+.+..+.-+++|++++++..
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l-~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~ 164 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGS-AEL-AGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR 164 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTE-EEE-EETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCc-EEE-EcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence 444322221 1122333444434443 233 344454 344443343322 23344577889999999999888877
Q ss_pred CCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC-Cc---cceEeecCCCCeEEEEE
Q psy6213 205 DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP-YI---PLASFTEHKDVVSGLAW 280 (330)
Q Consensus 205 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~-~~---~~~~~~~~~~~v~~~~~ 280 (330)
-..+.-||.-...-..........+..+.|.|++...+ ... .|.|+.=+.... .. +........-.+..++|
T Consensus 165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~---Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LAR---GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EET---TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred ccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeC---CcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence 55566777544322333444568899999999988534 443 888888872211 11 01111112234899999
Q ss_pred ecCCCEEEEeecCCeEee
Q psy6213 281 RGDPQLFIASSRVSIIPR 298 (330)
Q Consensus 281 ~~~~~~l~s~~~dg~i~i 298 (330)
.+++...++|+ .|.+..
T Consensus 241 ~~~~~~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 241 RPPNEIWAVGG-SGTLLV 257 (302)
T ss_dssp SSSS-EEEEES-TT-EEE
T ss_pred cCCCCEEEEeC-CccEEE
Confidence 98877777555 555554
|
|
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.051 Score=45.59 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=94.8
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee-
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST- 133 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~- 133 (330)
+.+-|. |.+..+.+...|.+.=|-....+..-++..-....++|.++.|++ |.+.+|+--.+++|.+++....+..
T Consensus 26 ngvFfD--DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFD--DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeec--cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhh
Confidence 445554 444444444456677777765443333333334567999999998 8999999999999999998543332
Q ss_pred ---eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe
Q psy6213 134 ---KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS 203 (330)
Q Consensus 134 ---~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 203 (330)
.+.+.....|....|+.+.+ ++.....| +-+|........++..+.|...|+-..|.++.+.++.++
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTE--IAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHHhccCcceeEEEEEecCee--EEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 22333455688899988754 55544444 666666554566777778888899999999877544333
|
|
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.034 Score=46.60 Aligned_cols=127 Identities=15% Similarity=0.184 Sum_probs=85.9
Q ss_pred cCCcEEEEecCCCc--cceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc-cee---ccccceEEEEE
Q psy6213 161 ENGTIQQWDVRRPE--KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE-YSI---NTIASVSRIKW 234 (330)
Q Consensus 161 ~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~---~~~~~v~~~~~ 234 (330)
..|.+.=|-...++ .++..-....++|.++.|++|.+.+|+--.+..|.+++....+... ... .....|....|
T Consensus 41 rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W 120 (657)
T KOG2377|consen 41 RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCW 120 (657)
T ss_pred ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEE
Confidence 34555666554322 2222233456799999999999999999999999999984432211 111 12345889999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeec
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
+.+.. +|-.+ +..+.+|.....+..+.....|...|.-..|.++-+.+.-++.
T Consensus 121 ~~s~e--~A~i~---~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 121 TSSTE--IAFIT---DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred ecCee--EEEEe---cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 98855 44443 6667788776555556777788889999999998876555543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0025 Score=35.35 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=27.7
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
...|..++|+| ..++||.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 34478999999 99999999999999999984
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0037 Score=57.36 Aligned_cols=101 Identities=20% Similarity=0.335 Sum_probs=73.3
Q ss_pred CCCEEEEEecCCcEEEEEeecC-ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCe
Q psy6213 109 ESNWLISGSQDGTMRLFDIRCQ-ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPI 187 (330)
Q Consensus 109 ~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i 187 (330)
.+..++.|+..|.+...|.... .+...-+...++|++++|+.+|. +++.|-.+|.|.+||+.+ .++.+.+..|..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHR-AKILKVITEHGAPV 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccC-CcceeeeeecCCcc
Confidence 4567888898999999988753 11222233567999999999998 688999999999999998 66677776666554
Q ss_pred EEE---EEcCCCCEEEEEecCCcEEEEeC
Q psy6213 188 FAC---DWHPEHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 188 ~~~---~~~~~~~~l~~~~~dg~i~i~d~ 213 (330)
+.+ .+..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 444 34445667888877776 5543
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0042 Score=34.46 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCcEEEEeCC
Q psy6213 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLS 214 (330)
Q Consensus 184 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 214 (330)
...|..++|+|...++|.++.+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999983
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.13 Score=40.95 Aligned_cols=152 Identities=12% Similarity=0.094 Sum_probs=87.5
Q ss_pred ceeEEEEEecCCCEEEEEe-cCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEe-cCCCccc
Q psy6213 99 TVNKVSFHYVESNWLISGS-QDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWD-VRRPEKC 176 (330)
Q Consensus 99 ~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d-~~~~~~~ 176 (330)
.+.+.++++ +++.++... .++.-.+|-...+....... ....+..-.|++++. +.+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCC-EEEEEcCCCceEEEEecCCCcce
Confidence 688899998 666555444 23333444334344333332 233678889999976 565555566666663 2222222
Q ss_pred eeeecc--CCCCeEEEEEcCCCCEEEEEe---cCCcEEEEeCCCCc-----c----ccceeccccceEEEEEcCCCCeEE
Q psy6213 177 FYQFTA--HSGPIFACDWHPEHAWLATAS---RDKTIKVWDLSIKP-----S----LEYSINTIASVSRIKWRPQRKFHL 242 (330)
Q Consensus 177 ~~~~~~--~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~-----~----~~~~~~~~~~v~~~~~~~~~~~l~ 242 (330)
...... -.+.|..+.++|||..++... .++.|.+=-+.... . ..........+..+.|.+++..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 222221 112899999999999877666 34667776443111 1 111112346789999999999766
Q ss_pred EEeecccCCeEEE
Q psy6213 243 ASCSLVVDSSVNV 255 (330)
Q Consensus 243 ~~~~~~~~~~i~i 255 (330)
++.. .++.+..
T Consensus 182 ~~~~--~~~~~~~ 192 (253)
T PF10647_consen 182 LGRS--AGGPVVR 192 (253)
T ss_pred EeCC--CCCceeE
Confidence 6555 4554444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.15 Score=45.59 Aligned_cols=146 Identities=6% Similarity=-0.054 Sum_probs=68.0
Q ss_pred CCcEEEEEcCCC------cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC-----CcEEEEEeecCc
Q psy6213 63 EENHIATGATNG------AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD-----GTMRLFDIRCQE 131 (330)
Q Consensus 63 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~ 131 (330)
++..++.|+.++ .+..||..+. .......+...... .+++.. ++.+++.||.+ ..+..||..+.+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~R~~-~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTK-SWNKVPELIYPRKN-PGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCC-eeeECCCCCccccc-ceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 566777776543 4667887651 12111111111111 122222 67788888765 347778876654
Q ss_pred eeeeeec-CCCCeEEEEEcCCCCcEEEEEecC------CcEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEe
Q psy6213 132 STKIFHS-NTESVRDVEFNPHSPYAFASVSEN------GTIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLATAS 203 (330)
Q Consensus 132 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d------g~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 203 (330)
-...-.. ....-.+++. -++. +++.|+.+ ..+..||+.+..- ....+...... .++.. .++..++.|+
T Consensus 370 W~~~~~lp~~r~~~~~~~-~~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG 445 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVN-VNNL-IYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIYVIGG 445 (534)
T ss_pred eeeCCCcCcCCccceEEE-ECCE-EEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEEEECC
Confidence 3221110 1111111222 2343 67777632 3578888875321 11111111111 12222 2566677776
Q ss_pred cCC--------cEEEEeCCCC
Q psy6213 204 RDK--------TIKVWDLSIK 216 (330)
Q Consensus 204 ~dg--------~i~i~d~~~~ 216 (330)
.++ .+.+||..+.
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred ccCCCCCcccceEEEecCCCC
Confidence 432 3888888765
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.36 Score=44.55 Aligned_cols=195 Identities=9% Similarity=0.093 Sum_probs=99.0
Q ss_pred cceeeeeecccCCcEEEEEcCC-----CcEEEEECCCCCCCcee-EEecccccceeEEEEEecCCCEEEEEecC------
Q psy6213 52 FSCNDVAWSCIEENHIATGATN-----GAVVVWNLGQISRSKQE-RVFNDHKRTVNKVSFHYVESNWLISGSQD------ 119 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~-~~~~~~~~~i~~i~~~~~~~~~l~~~~~d------ 119 (330)
+.+..+.|+| ++++|+.+... ..|++.|+.+ +..+ ..+.. .-..++|.+ +++.|+....+
T Consensus 127 ~~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~t---g~~l~~~i~~---~~~~~~w~~-D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 127 YTLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLET---GNWYPELLDN---VEPSFVWAN-DSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCC---CCCCCccccC---cceEEEEee-CCCEEEEEEecCCCCCC
Confidence 4467789999 88888765332 2478888876 3321 11221 114589998 66655544332
Q ss_pred CcEEEEEeecC--ceeeeeecCCCCeE-EEEEcCCCCcEEEEEec--CCcEEEEecCCC-ccceeeeccCCCCeEEEEEc
Q psy6213 120 GTMRLFDIRCQ--ESTKIFHSNTESVR-DVEFNPHSPYAFASVSE--NGTIQQWDVRRP-EKCFYQFTAHSGPIFACDWH 193 (330)
Q Consensus 120 ~~i~i~d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~--dg~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~ 193 (330)
..|+.+++.++ +....+........ ....+.+++++++.... ++.+.+++.... ......+....+....+. +
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 277 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H 277 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e
Confidence 36788888777 33444543333333 33344477765544433 357888885432 222222222222223332 3
Q ss_pred CCCCEEEEEecC-C--cEEEEeCCCCccccceecc--ccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 194 PEHAWLATASRD-K--TIKVWDLSIKPSLEYSINT--IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 194 ~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
..+.+++....+ . .|...++...........+ ...+..+.+. +.++++... .++.-+++-+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~--~~g~~~l~~~~ 344 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER--QRGLTSLRQIN 344 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE--eCCEEEEEEEc
Confidence 233333332221 2 3444444422222233333 2467777777 445677666 56665555443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.08 Score=47.26 Aligned_cols=115 Identities=15% Similarity=0.224 Sum_probs=72.1
Q ss_pred CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEc--CCCCEEEEEecCCcEEEEeCC--
Q psy6213 139 NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWH--PEHAWLATASRDKTIKVWDLS-- 214 (330)
Q Consensus 139 ~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~-- 214 (330)
.-....-+.-+.-++ +.++-+....+.|||.+...-.....-...+.|..++|. |+++.+++.|..+.|.+|--.
T Consensus 28 ~i~~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 28 GISNPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CCCCcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 334455555555555 344444455799999987432211111356889999985 588999999999999998542
Q ss_pred ---CC-cc------ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 215 ---IK-PS------LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 215 ---~~-~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
.. +. +........+|....|.++|.. ++++ ++.+.|+|-.
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~L-vV~s----GNqlfv~dk~ 156 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTL-VVGS----GNQLFVFDKW 156 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeE-EEEe----CCEEEEECCC
Confidence 11 11 1111123468999999999974 3333 6788888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.22 Score=44.65 Aligned_cols=176 Identities=10% Similarity=0.059 Sum_probs=81.7
Q ss_pred eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCC-----cEEEEECCCCCCCceeEEecccccc
Q psy6213 25 VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG-----AVVVWNLGQISRSKQERVFNDHKRT 99 (330)
Q Consensus 25 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~ 99 (330)
.+..||..+++............ . .+++.. ++..++.|+.++ .+..||..+. .......+... ..
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~-----~-~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~lp~~-r~ 381 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRK-----N-PGVTVF--NNRIYVIGGIYNSISLNTVESWKPGES-KWREEPPLIFP-RY 381 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccc-----c-ceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC-ceeeCCCcCcC-Cc
Confidence 46777877766543322221111 0 122221 577778887652 4667887652 12222212111 11
Q ss_pred eeEEEEEecCCCEEEEEecC------CcEEEEEeecCceeeeeecCCC-CeEEEEEcCCCCcEEEEEecCC--------c
Q psy6213 100 VNKVSFHYVESNWLISGSQD------GTMRLFDIRCQESTKIFHSNTE-SVRDVEFNPHSPYAFASVSENG--------T 164 (330)
Q Consensus 100 i~~i~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~dg--------~ 164 (330)
-.+++.. ++.+.+.||.+ ..+..||..+.+-...-..... .-.++.. .++. +++.|+.++ .
T Consensus 382 ~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~ 457 (534)
T PHA03098 382 NPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGK-IYVIGGISYIDNIKVYNI 457 (534)
T ss_pred cceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCE-EEEECCccCCCCCcccce
Confidence 1122222 56777777732 3578888876543221111111 1112222 2343 677776432 3
Q ss_pred EEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEecC-----CcEEEEeCCCC
Q psy6213 165 IQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLATASRD-----KTIKVWDLSIK 216 (330)
Q Consensus 165 i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 216 (330)
+.+||..+..= .+..+.........+.+ +++.++.|+.+ +.+.+||..+.
T Consensus 458 v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 458 VESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 88888876321 11111111111112222 56777777654 45777877654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.34 Score=42.35 Aligned_cols=152 Identities=15% Similarity=0.309 Sum_probs=94.2
Q ss_pred ccceeEEEEEecCCCEEE-EEe--cCCcEEEEEeecCceeeeeecCCCCeEEEEEcCC----CCcEEEEEecCCcEEEEe
Q psy6213 97 KRTVNKVSFHYVESNWLI-SGS--QDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH----SPYAFASVSENGTIQQWD 169 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~-~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~dg~i~i~d 169 (330)
-.++..++|. ||+.++ +.- .+|.+++=| .+.+..| ..|..+.|.|- .+. +++......|.+|.
T Consensus 19 iHPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~pa-LLAVQHkkhVtVWq 88 (671)
T PF15390_consen 19 IHPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPA-LLAVQHKKHVTVWQ 88 (671)
T ss_pred hccccceEec--CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCc-eEEEeccceEEEEE
Confidence 3578899998 555444 332 233333322 2223333 45889999986 333 55566678899998
Q ss_pred cCCCc----cceeeecc-----CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCc-cccceeccccceEEEEEcCCCC
Q psy6213 170 VRRPE----KCFYQFTA-----HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKP-SLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 170 ~~~~~----~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
+.... +.+..... ..--...+.|+|....|++-.....-.+++++... .+.......+.|.|.+|.+||+
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 86311 11111110 01112457799999888877766555666665442 3455556788999999999999
Q ss_pred eEEEEeecccCCeEEEEEccC
Q psy6213 240 FHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~ 260 (330)
.|+++.+ ..=.-++||-..
T Consensus 169 RLVVAvG--SsLHSyiWd~~q 187 (671)
T PF15390_consen 169 RLVVAVG--SSLHSYIWDSAQ 187 (671)
T ss_pred EEEEEeC--CeEEEEEecCch
Confidence 9887776 455677888543
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.29 Score=43.92 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=97.3
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee----ecCCCCeEEEEEcC
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF----HSNTESVRDVEFNP 150 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~v~~~~~~~ 150 (330)
.|+|++... ..+..+.-....+-.+.|+ +...|++...+|++++|++. |+.+... ......|..+.+..
T Consensus 65 ~I~If~~sG----~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 65 YIRIFNISG----QLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFH 137 (829)
T ss_pred eEEEEeccc----cchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEec
Confidence 477777653 4444443344588889998 56778888999999999986 3333331 22334566666666
Q ss_pred CCCcEEEEEecCCcEEEEecCCCccceeeecc---CCCCeEEEEEcCCCC---EEEEEe-cCCcEEEEeCCCCcc-ccce
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTA---HSGPIFACDWHPEHA---WLATAS-RDKTIKVWDLSIKPS-LEYS 222 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~---~l~~~~-~dg~i~i~d~~~~~~-~~~~ 222 (330)
+| ++.-..+|.+.+-+-.. ......++. ...+-.+-...+++. .++-.. ..+ ..++-...... ....
T Consensus 138 ~G---Vavlt~~g~v~~i~~~~-~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 138 NG---VAVLTVSGQVILINGVE-EPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHAL 212 (829)
T ss_pred Cc---eEEEecCCcEEEEcCCC-cchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccccccc
Confidence 65 34444456655543222 112222222 111112222222211 111111 111 11222222211 1122
Q ss_pred eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec-CCCCeEEEEEecC
Q psy6213 223 INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE-HKDVVSGLAWRGD 283 (330)
Q Consensus 223 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~ 283 (330)
....+.+..+..||+.+++..-. ..|.|.+-+....+. +..+.. -..+...++|..+
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt---~~G~i~~vs~D~~~~-lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYT---ETGKIWVVSIDLSQI-LCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEe---cCCcEEEEecchhhh-hhccCCCCCCchHhceeecC
Confidence 22247788999999999854444 599999988775544 333331 1122335666543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.43 Score=42.50 Aligned_cols=53 Identities=9% Similarity=0.064 Sum_probs=36.0
Q ss_pred cEEEEEeecCceeeeeecCCCC---------eEEEEEcCCCC--cEEEEEecCCcEEEEecCCC
Q psy6213 121 TMRLFDIRCQESTKIFHSNTES---------VRDVEFNPHSP--YAFASVSENGTIQQWDVRRP 173 (330)
Q Consensus 121 ~i~i~d~~~~~~~~~~~~~~~~---------v~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~ 173 (330)
.|.-.|+++++..-.++..... ..-+....+++ .+++.+..+|.+++.|.+++
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence 6778899999987766642211 11222323554 47889999999999999884
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.47 Score=42.26 Aligned_cols=193 Identities=14% Similarity=0.108 Sum_probs=104.1
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeecc-ccc---cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCce
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGK-NIN---LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQ 89 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~-~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 89 (330)
++..++++ ++.|.-.|.++|+.+-.+...... ... ....-..+++ .+..++.++.|+.+.-.|..+ ++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~T---Gk~ 142 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKT---GKV 142 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCC---CCE
Confidence 44455555 888888999998876555432211 000 0000011222 235677788899999999887 444
Q ss_pred eEEecc--cc--cceeE-EEEEecCCCEEEEEe------cCCcEEEEEeecCceeeeeecCCC-----------------
Q psy6213 90 ERVFND--HK--RTVNK-VSFHYVESNWLISGS------QDGTMRLFDIRCQESTKIFHSNTE----------------- 141 (330)
Q Consensus 90 ~~~~~~--~~--~~i~~-i~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~----------------- 141 (330)
+-.... +. ..+.+ -... ++ .++++. .+|.|..+|.++++.+-.+..-..
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~ 219 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG 219 (527)
T ss_pred EeecccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence 433321 11 01111 1111 33 444443 268999999999987655432110
Q ss_pred --------------Ce-EEEEEcCCCCcEEEEEecC-----C-----------cEEEEecCCCccceeeecc--CC----
Q psy6213 142 --------------SV-RDVEFNPHSPYAFASVSEN-----G-----------TIQQWDVRRPEKCFYQFTA--HS---- 184 (330)
Q Consensus 142 --------------~v-~~~~~~~~~~~~~~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~--~~---- 184 (330)
.+ ..+++.|... +++.+..+ + .|.-.|+++ ++..-.++. |.
T Consensus 220 ~~tw~~~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T-G~~~W~~Q~~~~D~wD~ 297 (527)
T TIGR03075 220 AKTWPGDAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT-GKIKWHYQTTPHDEWDY 297 (527)
T ss_pred cCCCCCCccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc-CCEEEeeeCCCCCCccc
Confidence 11 1335666555 45554422 2 455667776 333333332 21
Q ss_pred ---CCeEEEEEcCCCC---EEEEEecCCcEEEEeCCCCcc
Q psy6213 185 ---GPIFACDWHPEHA---WLATASRDKTIKVWDLSIKPS 218 (330)
Q Consensus 185 ---~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~ 218 (330)
....-+....+|+ .++.+..+|.+.+.|.++++.
T Consensus 298 d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 298 DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 1122233334665 788999999999999998854
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.51 Score=42.51 Aligned_cols=203 Identities=12% Similarity=0.130 Sum_probs=98.5
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeE
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNK 102 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~ 102 (330)
.-.|+||+.. |..........+. +-.+.|+. ...|++...+|++.+|++..........-.......|..
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~-------lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~e 132 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGE-------LIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVE 132 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCC-------eeeecccC--CceEEEEeccceEEEeecchhhhcccccccccccCceeE
Confidence 4567788765 4444433333332 46788884 666677789999999998651111100111223344555
Q ss_pred EEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec---CCCCeEEEEEcCCCC--cEEEEEecCCcEEEEecCCCccce
Q psy6213 103 VSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS---NTESVRDVEFNPHSP--YAFASVSENGTIQQWDVRRPEKCF 177 (330)
Q Consensus 103 i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~ 177 (330)
+.+.. +| +++-..+|++.+-+-.....+..+.. ...+-.|-...+++. .+++-....--..++-........
T Consensus 133 c~~f~-~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~ 209 (829)
T KOG2280|consen 133 CRFFH-NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQL 209 (829)
T ss_pred EEEec-Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccc
Confidence 55553 44 33333345555543221212222221 111112222222211 111111100001122222211222
Q ss_pred eeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc-eeccccceEEEEEcCCC
Q psy6213 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY-SINTIASVSRIKWRPQR 238 (330)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~ 238 (330)
..+....+.+..+..||+.++|+.-..+|.|.+-+....+.... ..+...+...++|.-+.
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 22332346688899999999999999999999988776644222 22223333466666554
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.053 Score=50.62 Aligned_cols=147 Identities=9% Similarity=0.078 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCCCcEEEEEec-CCcEEEEecCCCccce----eeecc------CCCCeEEEEEcCCC-CEEEEEecCCcE
Q psy6213 141 ESVRDVEFNPHSPYAFASVSE-NGTIQQWDVRRPEKCF----YQFTA------HSGPIFACDWHPEH-AWLATASRDKTI 208 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~----~~~~~------~~~~i~~~~~~~~~-~~l~~~~~dg~i 208 (330)
.++..+...+|+....+.-+. +-.|..||+++-.... ..+.. ......++.|+|.- ...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 456666777776533333333 3368899997522111 11111 22345677888853 245667788999
Q ss_pred EEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc-cceEeec-CCCCeEEEEEecCCCE
Q psy6213 209 KVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI-PLASFTE-HKDVVSGLAWRGDPQL 286 (330)
Q Consensus 209 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~ 286 (330)
++..+..........+.....++++|+|.|+.++++-. .|++.-|...-... .+..... ....|.++.|-....+
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n---nGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN---NGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC---CCeEEEeecccceeecccCCCcCCCcceeEEEEecceeE
Confidence 99887766555555566788999999999998666654 89999887653311 0111111 1367999999876666
Q ss_pred EEEe
Q psy6213 287 FIAS 290 (330)
Q Consensus 287 l~s~ 290 (330)
+++-
T Consensus 258 lvvy 261 (1405)
T KOG3630|consen 258 LVVY 261 (1405)
T ss_pred EEEe
Confidence 6653
|
|
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.00046 Score=57.61 Aligned_cols=139 Identities=11% Similarity=0.078 Sum_probs=100.3
Q ss_pred eeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceee
Q psy6213 100 VNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ 179 (330)
Q Consensus 100 i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~ 179 (330)
.....|.|.+.+ ++.++.+..+..||-. ++...... .++....++|..+++.+++.+-..+.+++||+.+.......
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 345567774444 7777778889999864 44443333 34556788999988877777888999999999874332222
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEE
Q psy6213 180 FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHL 242 (330)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 242 (330)
+.+ ...-.-+.|++.+..++.+...|.+.+++..+.+.......|..+++++++.+.+..++
T Consensus 114 ~gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 114 SGG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred ccC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee
Confidence 221 22223378999888999999999999999998866666666889999999999876433
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.24 Score=41.91 Aligned_cols=148 Identities=10% Similarity=0.040 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCCcEEEEEe-----------cCC-cEEEEecCCC-cc--ceeeeccCCCCeEEEEEcCCCCEEEEEecC
Q psy6213 141 ESVRDVEFNPHSPYAFASVS-----------ENG-TIQQWDVRRP-EK--CFYQFTAHSGPIFACDWHPEHAWLATASRD 205 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~-----------~dg-~i~i~d~~~~-~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 205 (330)
.....|+|.++|. ++++-. ..+ .|.+++-.++ ++ ....+.........+++.+++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 3466889999987 454432 223 6777764432 22 123333334456889999888 444 4444
Q ss_pred CcEEEEeCCCC-----cc--ccceec-----cccceEEEEEcCCCCeEEEEeecc----------------cCCeEEEEE
Q psy6213 206 KTIKVWDLSIK-----PS--LEYSIN-----TIASVSRIKWRPQRKFHLASCSLV----------------VDSSVNVWD 257 (330)
Q Consensus 206 g~i~i~d~~~~-----~~--~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~----------------~~~~i~i~d 257 (330)
...++.|.... +. +..... +......++|.|||..+++.++.. ..+.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334354321 11 111111 124477899999998655444200 014455555
Q ss_pred ccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC
Q psy6213 258 IRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 258 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
....+ ...+...-.....++|+|+|+++++-..+
T Consensus 171 pdg~~--~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGK--LRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCe--EEEEecCcCCCccceECCCCCEEEEccCC
Confidence 55443 22332223446789999999887764433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.29 Score=38.57 Aligned_cols=182 Identities=11% Similarity=0.108 Sum_probs=108.4
Q ss_pred cceeEEEEEecCCCEEEEEecCC--cEEEEEeecCceeeeeecCCC-CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCc
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDG--TMRLFDIRCQESTKIFHSNTE-SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 174 (330)
.-...+.|.. ++.++-+.+.-| .|+.+|+.+++......-... --..++...+ .++...=.++...+||..+ -
T Consensus 45 aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~t-l 120 (264)
T PF05096_consen 45 AFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNT-L 120 (264)
T ss_dssp -EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTT-T
T ss_pred ccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEcccc-c
Confidence 3455778854 677777777666 789999999987766553322 1233444433 3666677889999999987 5
Q ss_pred cceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec-----cccceEEEEEcCCCCeEEEEeeccc
Q psy6213 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN-----TIASVSRIKWRPQRKFHLASCSLVV 249 (330)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~~ 249 (330)
+.+.++. ..+.=..++ .+++.|+.+.....++++|..+.+......- .-..++.+.|- +|. +.|-.- .
T Consensus 121 ~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW--~ 193 (264)
T PF05096_consen 121 KKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVW--Q 193 (264)
T ss_dssp EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEET--T
T ss_pred eEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeC--C
Confidence 5566654 334555666 3577777777778999999887744322211 12345667776 443 566655 5
Q ss_pred CCeEEEEEccCCCccceEee---------------cCCCCeEEEEEecCCCEEEEee
Q psy6213 250 DSSVNVWDIRRPYIPLASFT---------------EHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 250 ~~~i~i~d~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
...|...|..++.. ...+. ....-.++|||+|..+.|...|
T Consensus 194 td~I~~Idp~tG~V-~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 194 TDRIVRIDPETGKV-VGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SSEEEEEETTT-BE-EEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeCCCCeE-EEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 77777888887764 22221 1134689999999666555544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.51 Score=40.33 Aligned_cols=233 Identities=9% Similarity=0.066 Sum_probs=127.0
Q ss_pred cCCcEEEEEcCCCcEEEEECCCCCC-CceeEEecccccceeEEEEEe---c-CCCEEEEEecCCcEEEEEeecC--c---
Q psy6213 62 IEENHIATGATNGAVVVWNLGQISR-SKQERVFNDHKRTVNKVSFHY---V-ESNWLISGSQDGTMRLFDIRCQ--E--- 131 (330)
Q Consensus 62 ~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~i~~i~~~~---~-~~~~l~~~~~d~~i~i~d~~~~--~--- 131 (330)
.+.+.+++|+..|.++||+....+. ...+..-..-+.+|..+..-+ . +...||+ -.-..+.+|.+... .
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 3667999999999999999865321 111222223456777776532 1 2234444 44567888887421 1
Q ss_pred ----eeeeeecCC--CCeEEEEEcC----CCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEE
Q psy6213 132 ----STKIFHSNT--ESVRDVEFNP----HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLAT 201 (330)
Q Consensus 132 ----~~~~~~~~~--~~v~~~~~~~----~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 201 (330)
.+..+..|. .....+..-| .+..++.+-+.||.+.+|+-+. ......+. ..--...+.|.+....|++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-~~f~~~lp-~~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-FAFSRFLP-DFLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-EEEEEEcC-CCCCCcCeEEeecCCEEEE
Confidence 111111122 2233344333 2235788889999999999764 22122222 2223345778888889999
Q ss_pred EecCCcEEEEeCCCCcc----------------------ccceeccccce---EEEEEcCCCCeEEEEeecccCCeEEEE
Q psy6213 202 ASRDKTIKVWDLSIKPS----------------------LEYSINTIASV---SRIKWRPQRKFHLASCSLVVDSSVNVW 256 (330)
Q Consensus 202 ~~~dg~i~i~d~~~~~~----------------------~~~~~~~~~~v---~~~~~~~~~~~l~~~~~~~~~~~i~i~ 256 (330)
++.+..+..|....... ......-...+ ..+.++.....+++-| +..+...
T Consensus 192 ~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg----er~Lf~l 267 (418)
T PF14727_consen 192 ASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG----ERSLFCL 267 (418)
T ss_pred ecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe----cceEEEE
Confidence 99988999887532100 01111112233 3334444444555554 6777777
Q ss_pred EccCCCccceEeecCCCCeEEEE-E----ecCC---CEEEEeecCCeEeeeeccce
Q psy6213 257 DIRRPYIPLASFTEHKDVVSGLA-W----RGDP---QLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 257 d~~~~~~~~~~~~~~~~~v~~~~-~----~~~~---~~l~s~~~dg~i~iw~~~~~ 304 (330)
+-. +. +......+....++. | ..++ ..++.++.++++.||+..+.
T Consensus 268 ~~~-G~--l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L 320 (418)
T PF14727_consen 268 KDN-GS--LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL 320 (418)
T ss_pred cCC-Ce--EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE
Confidence 664 32 222222222222221 1 1122 25888999999999986643
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.49 Score=39.40 Aligned_cols=235 Identities=12% Similarity=0.101 Sum_probs=116.0
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEe----cccccceeEEEEEec--CCCEEE-EEecC--------
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVF----NDHKRTVNKVSFHYV--ESNWLI-SGSQD-------- 119 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~i~~i~~~~~--~~~~l~-~~~~d-------- 119 (330)
..|+|.| +++++++ ...|.|++++... .....+..+ .........++++|. ...+|. +.+..
T Consensus 5 ~~~a~~p-dG~l~v~-e~~G~i~~~~~~g-~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 5 RSMAFLP-DGRLLVA-ERSGRIWVVDKDG-SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEET-TSCEEEE-ETTTEEEEEETTT-EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred eEEEEeC-CCcEEEE-eCCceEEEEeCCC-cCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 7899999 7777665 5599999999332 111222222 234467889999982 223343 33321
Q ss_pred CcEEEEEeecC-------cee-eeeec---CCCCeEEEEEcCCCCcEEEEEecCC-------------cEEEEecCCCc-
Q psy6213 120 GTMRLFDIRCQ-------EST-KIFHS---NTESVRDVEFNPHSPYAFASVSENG-------------TIQQWDVRRPE- 174 (330)
Q Consensus 120 ~~i~i~d~~~~-------~~~-~~~~~---~~~~v~~~~~~~~~~~~~~~~~~dg-------------~i~i~d~~~~~- 174 (330)
..|.-|....+ +.+ ..+.. ....-..|+|.|++. ++++.+..+ .|.-.+....-
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 24555555433 111 11121 233456799999996 566655433 23333322100
Q ss_pred --c--------ceeee-ccCCCCeEEEEEcCC-CCEEEEEe-cCCcEEEEeCCCCc------------------------
Q psy6213 175 --K--------CFYQF-TAHSGPIFACDWHPE-HAWLATAS-RDKTIKVWDLSIKP------------------------ 217 (330)
Q Consensus 175 --~--------~~~~~-~~~~~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~------------------------ 217 (330)
. ....+ .++ .....++|+|. |.++++=- .++.=.|--+..+.
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 0 00111 112 22467899998 66554322 22222222222110
Q ss_pred ----cccceeccccceEEEEEcCC-------CCeEEEEeecccCCeEEEEEccCCCccce--E-eecCCCCeEEEEEecC
Q psy6213 218 ----SLEYSINTIASVSRIKWRPQ-------RKFHLASCSLVVDSSVNVWDIRRPYIPLA--S-FTEHKDVVSGLAWRGD 283 (330)
Q Consensus 218 ----~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~~~~~~~i~i~d~~~~~~~~~--~-~~~~~~~v~~~~~~~~ 283 (330)
.......+...+..+.|... |.+ +++.- ..+.|...++........ . +......+.++++.||
T Consensus 240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~-~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDL-FVADY--GGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp TTS---SEEETTT--EEEEEEE-SSSSGGGTTEE-EEEET--TTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCcCccceeecCccccCceEEECCccCccccCcE-EEecC--CCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 01111223345666776543 344 44443 477888888875533111 1 2234457999999999
Q ss_pred CCEEEEeecCCeEe
Q psy6213 284 PQLFIASSRVSIIP 297 (330)
Q Consensus 284 ~~~l~s~~~dg~i~ 297 (330)
|.+.++...+|.|+
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 99999888888875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.18 Score=46.27 Aligned_cols=80 Identities=18% Similarity=0.369 Sum_probs=54.7
Q ss_pred CCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC----------cc-c----------cceeccccceEEEEEcCCC---Ce
Q psy6213 185 GPIFACDWHPEHAWLATASRDKTIKVWDLSIK----------PS-L----------EYSINTIASVSRIKWRPQR---KF 240 (330)
Q Consensus 185 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~-~----------~~~~~~~~~v~~~~~~~~~---~~ 240 (330)
-.|..+.++|+|++++..|..| |.|..+... +. . .........|..+.|+|.+ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3588999999999999998865 444444321 11 0 0111234578999999974 67
Q ss_pred EEEEeecccCCeEEEEEccCCCccceEe
Q psy6213 241 HLASCSLVVDSSVNVWDIRRPYIPLASF 268 (330)
Q Consensus 241 l~~~~~~~~~~~i~i~d~~~~~~~~~~~ 268 (330)
|++-.+ |+.+|+||+.....+.+.+
T Consensus 164 l~vLts---dn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 164 LVVLTS---DNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEEec---CCEEEEEecCCCCCCeEEE
Confidence 777776 9999999998766554444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.34 Score=37.18 Aligned_cols=131 Identities=13% Similarity=0.174 Sum_probs=77.1
Q ss_pred eeeeecccCCcEEEEEcC-C---------CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEE
Q psy6213 55 NDVAWSCIEENHIATGAT-N---------GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRL 124 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~-d---------g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i 124 (330)
++-..+| +++++ .|.. | |.++.|-... .+..+...-.--+.++|+.+...+.++-+.+-+|.-
T Consensus 112 NDgkvdP-~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h-----~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 112 NDGKVDP-DGRYY-GGTMADFGDDLEPIGGELYSWLAGH-----QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred ccCccCC-CCcee-eeeeccccccccccccEEEEeccCC-----CceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 5566677 77774 3332 1 3444444321 222222233445678898633344445566677877
Q ss_pred EE--eecCce-----eeeeec---CC-CCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEc
Q psy6213 125 FD--IRCQES-----TKIFHS---NT-ESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWH 193 (330)
Q Consensus 125 ~d--~~~~~~-----~~~~~~---~~-~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~ 193 (330)
|| ..+|.. +..++. .. ...-.++...+|. ++++.-..++|...|..+ ++.+..++-....|++++|-
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~t-GK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTT-GKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCC-CcEEEEEEcCCCceEEEEec
Confidence 77 444432 222221 11 1122344555676 788888889999999998 67777777778899999996
Q ss_pred C
Q psy6213 194 P 194 (330)
Q Consensus 194 ~ 194 (330)
-
T Consensus 263 G 263 (310)
T KOG4499|consen 263 G 263 (310)
T ss_pred C
Confidence 4
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0016 Score=58.62 Aligned_cols=213 Identities=16% Similarity=0.173 Sum_probs=106.8
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEE-----ecccccceeEEEEEec--CCCEEEEEecCCcEEE
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERV-----FNDHKRTVNKVSFHYV--ESNWLISGSQDGTMRL 124 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~~~i~~i~~~~~--~~~~l~~~~~d~~i~i 124 (330)
..+..+.|...+...++ -.-|.+.+|+++.- +++.... .......+.-+.|.|. +.-++..+-.++.+++
T Consensus 133 G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l-~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~l 209 (1283)
T KOG1916|consen 133 GGVGDLQFAHTKCPKGR--RLVGELFVYDVDVL-QGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRL 209 (1283)
T ss_pred CCcccccccccCChHHH--HHhhhhheeehHhh-ccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeE
Confidence 34455565432222332 33467889998651 1222211 1222233445555541 4456667777888888
Q ss_pred EEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec
Q psy6213 125 FDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 125 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
...+.... ..+.+|...+..++|-..|-. .+. + .+|||+.|+.++.
T Consensus 210 L~~~ra~~-~l~rsHs~~~~d~a~~~~g~~-~l~-~-------------------------------lSpDGtv~a~a~~ 255 (1283)
T KOG1916|consen 210 LNINRALR-SLFRSHSQRVTDMAFFAEGVL-KLA-S-------------------------------LSPDGTVFAWAIS 255 (1283)
T ss_pred eeechHHH-HHHHhcCCCcccHHHHhhchh-hhe-e-------------------------------eCCCCcEEEEeec
Confidence 77764433 445557777777766555421 111 1 6677777777777
Q ss_pred CCcEEEEeCCC-----Cccccceeccc-cceEEEEEcCC-------CC--eEEEEeecccCCeEEEEEccCCCccc----
Q psy6213 205 DKTIKVWDLSI-----KPSLEYSINTI-ASVSRIKWRPQ-------RK--FHLASCSLVVDSSVNVWDIRRPYIPL---- 265 (330)
Q Consensus 205 dg~i~i~d~~~-----~~~~~~~~~~~-~~v~~~~~~~~-------~~--~l~~~~~~~~~~~i~i~d~~~~~~~~---- 265 (330)
||.++.|.+.- ..+.....+|+ .+-.|.-++.+ +. +++.+.. .+..+++|.....++++
T Consensus 256 dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd--~nre~k~w~~a~w~Cll~~~~ 333 (1283)
T KOG1916|consen 256 DGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD--VNREEKFWAEAPWQCLLDKLI 333 (1283)
T ss_pred CCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc--CCcceeEeeccchhhhhhhcc
Confidence 77766665432 22233333443 22222223322 11 2334443 56778888876554431
Q ss_pred ---eEeecCCCCeEEEEEec-CCCEEEEeecCCeEeeeeccc
Q psy6213 266 ---ASFTEHKDVVSGLAWRG-DPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 266 ---~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~~ 303 (330)
.....|.+.|+.+.... --..+++-+-++.|.+|.+.+
T Consensus 334 d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 334 DGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 11223333333221111 011245567788899997654
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.049 Score=29.29 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCC--cEEEEEecCCcEEEEecCC
Q psy6213 141 ESVRDVEFNPHSP--YAFASVSENGTIQQWDVRR 172 (330)
Q Consensus 141 ~~v~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~ 172 (330)
+.++++.|+|... .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3689999997544 5788888899999999995
|
It contains a characteristic DLL sequence motif. |
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.4 Score=41.21 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=66.2
Q ss_pred eEEEEEcCC-CCEEEEEec----------CCcEEEEeCCCCcccccee--ccccceEEEEEcCCCCeEEEEeecccCCeE
Q psy6213 187 IFACDWHPE-HAWLATASR----------DKTIKVWDLSIKPSLEYSI--NTIASVSRIKWRPQRKFHLASCSLVVDSSV 253 (330)
Q Consensus 187 i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i 253 (330)
+.+..|..| +.++++|+. .|.|.+|.......+.... ...+.+.++..- +|+ ++|+- +..|
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngk-llA~I----n~~v 850 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGK-LLAGI----NQSV 850 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCe-EEEec----CcEE
Confidence 344446555 566666652 3667777665532222222 123344444322 344 45553 7899
Q ss_pred EEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEee
Q psy6213 254 NVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPR 298 (330)
Q Consensus 254 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 298 (330)
++|+..+.+. ++.-..+..++..+...-.|..++.|.--+.+.+
T Consensus 851 rLye~t~~~e-Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 851 RLYEWTTERE-LRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred EEEEccccce-ehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 9999988865 6666677788898888888999999988777665
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.53 Score=36.18 Aligned_cols=210 Identities=11% Similarity=0.151 Sum_probs=111.1
Q ss_pred eecccCCcEEEEEcCCCcEEEEECCCCCCCceeE-EecccccceeEEEEEecCC---CEEEEEecCCcEEEEEee--cCc
Q psy6213 58 AWSCIEENHIATGATNGAVVVWNLGQISRSKQER-VFNDHKRTVNKVSFHYVES---NWLISGSQDGTMRLFDIR--CQE 131 (330)
Q Consensus 58 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~---~~l~~~~~d~~i~i~d~~--~~~ 131 (330)
.|.-..+.++.+--..|.|.-||..+. +..+ .+.+ .+..++.+ |..+ .+.+.++..-.|.-||.. .-.
T Consensus 21 ~w~~~~~sLl~VDi~ag~v~r~D~~qn---~v~ra~ie~--p~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~ 94 (310)
T KOG4499|consen 21 HWDVERQSLLYVDIEAGEVHRYDIEQN---KVYRAKIEG--PPSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAK 94 (310)
T ss_pred ceEEecceEEEEEeccCceehhhhhhh---heEEEEEec--CcceeEEE-EecCCCceEEEeecceEEEEEcccccceee
Confidence 343335566666666788888998772 2111 1211 11233333 2222 233333333345556632 112
Q ss_pred eeeeee---c--CCCCeEEEEEcCCCCcEEEEEe--c--------CCcEEEEecCCCccceeeeccCCCCeEEEEEcCCC
Q psy6213 132 STKIFH---S--NTESVRDVEFNPHSPYAFASVS--E--------NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH 196 (330)
Q Consensus 132 ~~~~~~---~--~~~~v~~~~~~~~~~~~~~~~~--~--------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~ 196 (330)
...++. . .....+.-..+|+|++ ..|. . .|.++.|-... + +..+...-+--+.++|+.+.
T Consensus 95 v~~t~~ev~~d~kknR~NDgkvdP~Gry--y~GtMad~~~~le~~~g~Ly~~~~~h--~-v~~i~~~v~IsNgl~Wd~d~ 169 (310)
T KOG4499|consen 95 VYRTLFEVQPDRKKNRLNDGKVDPDGRY--YGGTMADFGDDLEPIGGELYSWLAGH--Q-VELIWNCVGISNGLAWDSDA 169 (310)
T ss_pred eeeeccccCchHHhcccccCccCCCCce--eeeeeccccccccccccEEEEeccCC--C-ceeeehhccCCccccccccC
Confidence 222211 0 1345566678899985 3332 1 23455554432 1 22222222344678898877
Q ss_pred CEEE-EEecCCcEEEEe--CCCCcc-----ccceec----cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc
Q psy6213 197 AWLA-TASRDKTIKVWD--LSIKPS-----LEYSIN----TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP 264 (330)
Q Consensus 197 ~~l~-~~~~dg~i~i~d--~~~~~~-----~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~ 264 (330)
+.+. +-+.+-.|.-|| ..++.. +..... .......++...+|...+++-+ .++|...|..+++.
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---g~~V~~~dp~tGK~- 245 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---GGTVQKVDPTTGKI- 245 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec---CcEEEEECCCCCcE-
Confidence 6554 445566676677 444421 111111 1122334556677886555554 89999999999987
Q ss_pred ceEeecCCCCeEEEEEec
Q psy6213 265 LASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 265 ~~~~~~~~~~v~~~~~~~ 282 (330)
+.++.-....|++++|--
T Consensus 246 L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 246 LLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEEEEcCCCceEEEEecC
Confidence 777777788999999964
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.76 Score=36.93 Aligned_cols=226 Identities=8% Similarity=0.105 Sum_probs=116.7
Q ss_pred ceEEEEeeCCCe-eecC-CCeEEEEEcCCc-----ceeeeeceeeccccccccceeeeeecccCC------------cEE
Q psy6213 7 VHKHGLKADNGL-AQPS-RNVFKIFLIKDT-----EFVETHNLRVGKNINLNFSCNDVAWSCIEE------------NHI 67 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------~~l 67 (330)
-+.|+++|.+.+ ++.. .+...+||.... .......+.......-....+.+.|+. .. ..+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 367999999998 6666 999999998721 101111111101111112246677764 22 236
Q ss_pred EEEcCCCcEEEEECCCCCCC--ceeEEeccc-ccc-eeEEEEEec-CCCEEEEE-ecCCcEEEEEeecCcee--eeeecC
Q psy6213 68 ATGATNGAVVVWNLGQISRS--KQERVFNDH-KRT-VNKVSFHYV-ESNWLISG-SQDGTMRLFDIRCQEST--KIFHSN 139 (330)
Q Consensus 68 ~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~-~~~-i~~i~~~~~-~~~~l~~~-~~d~~i~i~d~~~~~~~--~~~~~~ 139 (330)
+.+++||+|.-|...-.... .....+... ... -..+++-.. .+++|..+ -..++|.+||-.-.+.. ..+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 77889999999986432110 111222211 222 334555431 23444443 45788888885422211 001100
Q ss_pred -----CCC--e---------EEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec--cCCCCeEEEEEcC------C
Q psy6213 140 -----TES--V---------RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT--AHSGPIFACDWHP------E 195 (330)
Q Consensus 140 -----~~~--v---------~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~------~ 195 (330)
-.+ | +-..-.++.. -=+.+..-|.|-+||+. +..++++. +.-.....|+..| .
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~-d~v~G~G~G~VdvFd~~--G~l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRN-DEVAGAGLGYVNVFTLN--GQLLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCccc-ccccCCCcceEEEEcCC--CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence 000 1 1111112211 12233345789999987 45566553 2234456677765 4
Q ss_pred CCEEEEEecCCcEEEEeCCCCccccceecc------ccceEEEEEcC
Q psy6213 196 HAWLATASRDKTIKVWDLSIKPSLEYSINT------IASVSRIKWRP 236 (330)
Q Consensus 196 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~ 236 (330)
+.+|+---.||+|..||..+++.+-..... ...++.++|..
T Consensus 261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 677777778999999999877543333322 13455666654
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.3 Score=40.43 Aligned_cols=90 Identities=13% Similarity=0.228 Sum_probs=55.8
Q ss_pred EEEEEcCCCCEEEEEecCCc-----EEEEeCCCCcc--ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 188 FACDWHPEHAWLATASRDKT-----IKVWDLSIKPS--LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
..+.|-|+|..+++-+.||. +.++..+..+. .....+....+..++|+-.... ++.+ ..+.+.+|-..+
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~v-lav~---~~n~~~lwttkN 325 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTV-LAVA---EGNLLKLWTTKN 325 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHH-HHHh---hcceEEEEEccc
Confidence 45899999999999886654 66665443322 2223344556777788777663 5555 388999998776
Q ss_pred CCccceEeecCCCCeEEEEEec
Q psy6213 261 PYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
-.-.+. ....-..+.-+.|+|
T Consensus 326 yhWYLK-~e~~ip~~s~vkwhp 346 (1243)
T COG5290 326 YHWYLK-VERQIPGISYVKWHP 346 (1243)
T ss_pred eEEEEE-EeecCCCcceeeecc
Confidence 543111 111223456677888
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.62 Score=35.42 Aligned_cols=108 Identities=13% Similarity=0.078 Sum_probs=65.8
Q ss_pred CEEEEEecCCcEEEEeCCCC-ccccceeccccceEEEEEcCCCCeEEEEeecccCC---eEEEE---Ecc-CCCccce-E
Q psy6213 197 AWLATASRDKTIKVWDLSIK-PSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDS---SVNVW---DIR-RPYIPLA-S 267 (330)
Q Consensus 197 ~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~---~i~i~---d~~-~~~~~~~-~ 267 (330)
..|+.+...+.|.+|++... .........-+.|..+.++..|.|+++.=...... .+|+| ... ....++. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 34444466678999999833 33555666778999999999999976665432233 56665 222 1111111 1
Q ss_pred eec---------------------CCCCeEEEEEec-CCCEEEEeecCCeEeeeeccceee
Q psy6213 268 FTE---------------------HKDVVSGLAWRG-DPQLFIASSRVSIIPRAKNIKIFI 306 (330)
Q Consensus 268 ~~~---------------------~~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~~~~~ 306 (330)
+.+ -..++.+++..| .|++++ | .++++.+|.......
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g-~~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-G-CGNKLVLFTLKYQTI 167 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-E-cCCEEEEEEEEEEEE
Confidence 112 133567888888 566554 3 366888997665444
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.052 Score=29.20 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=27.3
Q ss_pred cceeEEEEEecCC--CEEEEEecCCcEEEEEeec
Q psy6213 98 RTVNKVSFHYVES--NWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 98 ~~i~~i~~~~~~~--~~l~~~~~d~~i~i~d~~~ 129 (330)
+.+.+++|+|..+ ++|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998555 7899888899999999985
|
It contains a characteristic DLL sequence motif. |
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.24 Score=42.57 Aligned_cols=75 Identities=12% Similarity=0.185 Sum_probs=49.7
Q ss_pred CeEEEEEcCCCCEEEEEecCCcEEEEeCC---------CCccc-----------cceeccccceEEEEEcCCC---CeEE
Q psy6213 186 PIFACDWHPEHAWLATASRDKTIKVWDLS---------IKPSL-----------EYSINTIASVSRIKWRPQR---KFHL 242 (330)
Q Consensus 186 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~-----------~~~~~~~~~v~~~~~~~~~---~~l~ 242 (330)
.|..+..++.|..++..+.+|.+.++=.+ .++.. .+.....-.+..++|+|+. ..++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46778889999999999999976654311 11110 0111122346778999986 4555
Q ss_pred EEeecccCCeEEEEEccCCCc
Q psy6213 243 ASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 243 ~~~~~~~~~~i~i~d~~~~~~ 263 (330)
.-.+ |+.+++||+.....
T Consensus 185 iL~s---dnviRiy~lS~~te 202 (741)
T KOG4460|consen 185 LLTS---DNVIRIYSLSEPTE 202 (741)
T ss_pred EEec---CcEEEEEecCCcch
Confidence 5554 99999999987654
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.4 Score=38.95 Aligned_cols=143 Identities=6% Similarity=-0.128 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCC-----cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC--CcEEEEEeecCceeee
Q psy6213 63 EENHIATGATNG-----AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD--GTMRLFDIRCQESTKI 135 (330)
Q Consensus 63 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~ 135 (330)
++.++++|+.++ .+..||..+. .......+...... .+++.. ++.+.+.||.+ ..+..||..+.+-...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~-~W~~~~~m~~~r~~-~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISN-NWIPIPPMNSPRLY-ASGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCC-EEEECCCCCchhhc-ceEEEE--CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 556667777543 4667777651 11122222211111 222222 67777888764 3577788665432221
Q ss_pred eecCCCCeEE-EEEcCCCCcEEEEEecCC---cEEEEecCCCccce-eeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 136 FHSNTESVRD-VEFNPHSPYAFASVSENG---TIQQWDVRRPEKCF-YQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 136 ~~~~~~~v~~-~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
..-..+... ....-++. +.+.|+.++ .+..||.++..=.. ..+....... +++ .-+++..+.|+ ...+
T Consensus 347 -~~l~~~r~~~~~~~~~g~-IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG---~~e~ 419 (480)
T PHA02790 347 -PSLLKPRCNPAVASINNV-IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR---NAEF 419 (480)
T ss_pred -CCCCCCCcccEEEEECCE-EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC---ceEE
Confidence 111111111 11222344 777777553 46778877532110 0111011111 221 22466666663 5778
Q ss_pred EeCCCC
Q psy6213 211 WDLSIK 216 (330)
Q Consensus 211 ~d~~~~ 216 (330)
||.++.
T Consensus 420 ydp~~~ 425 (480)
T PHA02790 420 YCESSN 425 (480)
T ss_pred ecCCCC
Confidence 888655
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.5 Score=38.82 Aligned_cols=174 Identities=7% Similarity=-0.073 Sum_probs=79.3
Q ss_pred eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC--CcEEEEECCCCCCCceeEEecccccceeE
Q psy6213 25 VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN--GAVVVWNLGQISRSKQERVFNDHKRTVNK 102 (330)
Q Consensus 25 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~i~~ 102 (330)
.+..||..+++............. .+++. - ++...+.|+.+ ..+..||..+. .......+...... .+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~------~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n-~W~~~~~l~~~r~~-~~ 357 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLY------ASGVP-A-NNKLYVVGGLPNPTSVERWFHGDA-AWVNMPSLLKPRCN-PA 357 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhc------ceEEE-E-CCEEEEECCcCCCCceEEEECCCC-eEEECCCCCCCCcc-cE
Confidence 566788777655443332221110 11221 2 67777788764 35777886541 12222222211111 12
Q ss_pred EEEEecCCCEEEEEecCC---cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc-ee
Q psy6213 103 VSFHYVESNWLISGSQDG---TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC-FY 178 (330)
Q Consensus 103 i~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~-~~ 178 (330)
++.. ++.+.+.||.++ .+..||.++.+-...-......-...+..-++. +++.| |.+.+||.+++.=. +.
T Consensus 358 ~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~-IYv~G---G~~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 358 VASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRR-LFLVG---RNAEFYCESSNTWTLID 431 (480)
T ss_pred EEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCE-EEEEC---CceEEecCCCCcEeEcC
Confidence 2222 677888887653 467788765543221111111011111223343 56665 45778888753211 11
Q ss_pred eeccCCCCeEEEEEcCCCCEEEEEecC-----CcEEEEeCCCC
Q psy6213 179 QFTAHSGPIFACDWHPEHAWLATASRD-----KTIKVWDLSIK 216 (330)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 216 (330)
.+....... +++. -+++..++|+.+ ..+..||..+.
T Consensus 432 ~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 432 DPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 111111122 2222 256777777754 24556665543
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.56 Score=42.17 Aligned_cols=108 Identities=16% Similarity=0.234 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee--ccccceEEEEEc--CCCCeEEEEeecccCCeEEEEEcc---
Q psy6213 187 IFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI--NTIASVSRIKWR--PQRKFHLASCSLVVDSSVNVWDIR--- 259 (330)
Q Consensus 187 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~--~~~~~l~~~~~~~~~~~i~i~d~~--- 259 (330)
+.-+.-+.-++.-++.+....+.|||.+... ..... .....|..+.|. |+++.+++.|- ...|.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf---~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESFSEDDPIRDLDWTSTPDGQSILAVGF---PHHVLLYTQLRYD 107 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeeecCCCceeeceeeecCCCCEEEEEEc---CcEEEEEEccchh
Confidence 3344444445544454455679999998874 32222 347889999884 78998888885 9999988542
Q ss_pred --CC---CccceE--eecCC-CCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 260 --RP---YIPLAS--FTEHK-DVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 260 --~~---~~~~~~--~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+. ..++.. +..|+ .+|.+..|.++|.+++.+ ++.+.|+.
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence 11 112222 23344 579999999999777655 44677764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.4 Score=37.78 Aligned_cols=146 Identities=14% Similarity=0.203 Sum_probs=81.3
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeee---ecccCC-cEEEEEcCCCcEEEEECCCCCCC------
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVA---WSCIEE-NHIATGATNGAVVVWNLGQISRS------ 87 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~------ 87 (330)
++++ .|.++||+...++...... --...+..+|..++ |.+... ..||+ -.-..+.+|.+......
T Consensus 41 ivGS~~G~LrIy~P~~~~~~~~~l---llE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 41 IVGSYSGILRIYDPSGNEFQPEDL---LLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred EEeccccEEEEEccCCCCCCCccE---EEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcE
Confidence 4455 9999999996644221100 01112223344444 333223 34544 45678889987431111
Q ss_pred ceeEEecccc--cceeEEEEEecC----CCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec
Q psy6213 88 KQERVFNDHK--RTVNKVSFHYVE----SNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 88 ~~~~~~~~~~--~~i~~i~~~~~~----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
-.+.....|. .....+++-|.+ ..++++=+.||.+.+|+-+.......+.. .--...+.|.+..+ .|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tD-sfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTD-SFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCC-EEEEecC
Confidence 1223333343 334444444422 46788899999999999765433333332 22234567778777 4888888
Q ss_pred CCcEEEEec
Q psy6213 162 NGTIQQWDV 170 (330)
Q Consensus 162 dg~i~i~d~ 170 (330)
+..+..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 888888865
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=1.4 Score=36.77 Aligned_cols=151 Identities=10% Similarity=0.048 Sum_probs=82.1
Q ss_pred ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc
Q psy6213 97 KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK 175 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 175 (330)
...+..+.+.| ++.+++++ ..|.+..-.-..++. ..........++++.+.++++ ++++ +..|.+++=.... +.
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~-G~ 246 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDD-LE 246 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCC-CC
Confidence 45688888887 65555544 456554321111221 122223446789999999987 4544 4567665322222 22
Q ss_pred ceeeecc----CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccce---eccccceEEEEEcCCCCeEEEEeecc
Q psy6213 176 CFYQFTA----HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYS---INTIASVSRIKWRPQRKFHLASCSLV 248 (330)
Q Consensus 176 ~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~~ 248 (330)
.-..... ....+..+.+.|++..++ ++.+|.+.. ....++.-... .........+.|..+++. ++.+.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~-- 321 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQ-- 321 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCce-EEECC--
Confidence 2121111 123578889998877555 555675543 33333221111 122346778888877764 66664
Q ss_pred cCCeEEEEEc
Q psy6213 249 VDSSVNVWDI 258 (330)
Q Consensus 249 ~~~~i~i~d~ 258 (330)
.|.|--|+-
T Consensus 322 -~G~il~~~~ 330 (334)
T PRK13684 322 -RGVLLRYVG 330 (334)
T ss_pred -CceEEEecC
Confidence 888877753
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.78 Score=39.55 Aligned_cols=144 Identities=17% Similarity=0.244 Sum_probs=86.1
Q ss_pred eCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc------CCcEEEEEcCCCcEEEEECCCC
Q psy6213 14 ADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI------EENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 14 ~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
.|..+ +..| ...++-.|++.|+.+..+..+... -+.|.|. ....-++|-.+..|.-.|.+-.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv---------vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~ 547 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV---------VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRAR 547 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc---------eeecCCchhHHhcCccceEEeecccceEEeccccc
Confidence 34444 3344 667777788888888877776543 2344441 1223344555555555565542
Q ss_pred CCCceeEEecccccceeEEEEEe---cCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec
Q psy6213 85 SRSKQERVFNDHKRTVNKVSFHY---VESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~i~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
+..+... ..+...+.-.|+. ....+++.|+..|.|++||--.......+.+....|..+..+.+|+++++++
T Consensus 548 --gNKi~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-- 622 (776)
T COG5167 548 --GNKIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-- 622 (776)
T ss_pred --CCceeee-eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--
Confidence 2222211 1122222222221 2567999999999999999654444455666778899999999999766554
Q ss_pred CCcEEEEecC
Q psy6213 162 NGTIQQWDVR 171 (330)
Q Consensus 162 dg~i~i~d~~ 171 (330)
...+.+-|++
T Consensus 623 k~yllL~d~~ 632 (776)
T COG5167 623 KNYLLLTDVP 632 (776)
T ss_pred cceEEEEecc
Confidence 3567777765
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.05 Score=49.57 Aligned_cols=143 Identities=10% Similarity=0.164 Sum_probs=82.5
Q ss_pred CCeEEEEEcCC--cceeeeeceeeccccccccceeeeeecc--cCCcEEEEEcCCCcEEEEECCCCCCCceeEEeccccc
Q psy6213 23 RNVFKIFLIKD--TEFVETHNLRVGKNINLNFSCNDVAWSC--IEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKR 98 (330)
Q Consensus 23 d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 98 (330)
-|.+.+|+++- |++...+..+..... ...+.-+.|.| .+.-++..+..++.+++.+.+.. ....+..|..
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~--gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra----~~~l~rsHs~ 225 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPY--GSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA----LRSLFRSHSQ 225 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcC--CCCcceeeecccccccceeeeccCCCceeEeeechH----HHHHHHhcCC
Confidence 36677888764 555555544432221 12224455554 15567777888899998877652 1233445655
Q ss_pred ceeEEE-----------EEecCCCEEEEEecCCcEEEEEee-----cCceeeeeecCC-CCeEEEEEcCCCC-------c
Q psy6213 99 TVNKVS-----------FHYVESNWLISGSQDGTMRLFDIR-----CQESTKIFHSNT-ESVRDVEFNPHSP-------Y 154 (330)
Q Consensus 99 ~i~~i~-----------~~~~~~~~l~~~~~d~~i~i~d~~-----~~~~~~~~~~~~-~~v~~~~~~~~~~-------~ 154 (330)
.+..++ .+| ||..++.++.||.++.|.+- ...++...+.|. .+-.|..++.+.. +
T Consensus 226 ~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w 304 (1283)
T KOG1916|consen 226 RVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKW 304 (1283)
T ss_pred CcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcccee
Confidence 544433 577 89999999999998888753 234455666666 3333333443321 1
Q ss_pred -EEEE-EecCCcEEEEecCC
Q psy6213 155 -AFAS-VSENGTIQQWDVRR 172 (330)
Q Consensus 155 -~~~~-~~~dg~i~i~d~~~ 172 (330)
++++ ...+..+++|....
T Consensus 305 ~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 305 VLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred EEEEecccCCcceeEeeccc
Confidence 2333 33455688887654
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.8 Score=37.06 Aligned_cols=144 Identities=11% Similarity=0.072 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEE-EEecCCCccc-eeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc--
Q psy6213 143 VRDVEFNPHSPYAFASVSENGTIQ-QWDVRRPEKC-FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS-- 218 (330)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~dg~i~-i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-- 218 (330)
...+..++++. +++.+. .|.+. -||--. .. ...-......+..+.+.+++.+++++ ..|.+..- ...+..
T Consensus 241 f~~v~~~~dG~-~~~vg~-~G~~~~s~d~G~--~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDGD-YVAVSS-RGNFYLTWEPGQ--PYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEE 314 (398)
T ss_pred eeeEEEcCCCC-EEEEEC-CccEEEecCCCC--cceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCccc
Confidence 34455667776 344443 44433 344321 11 11112234568899999998877665 55665443 233211
Q ss_pred --ccceec---cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEe---ecCCCCeEEEEEecCCCEEEEe
Q psy6213 219 --LEYSIN---TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASF---TEHKDVVSGLAWRGDPQLFIAS 290 (330)
Q Consensus 219 --~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~ 290 (330)
...... ....+..+.|.+++.. ++++. .|.+..-. ..++. -... ..-...++.+.|.++++.++ .
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~-~a~G~---~G~v~~s~-D~G~t-W~~~~~~~~~~~~ly~v~f~~~~~g~~-~ 387 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEA-WAAGG---SGILLRST-DGGKS-WKRDKGADNIAANLYSVKFFDDKKGFV-L 387 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcE-EEEEC---CCcEEEeC-CCCcc-eeEccccCCCCcceeEEEEcCCCceEE-E
Confidence 111111 2245889999988874 66664 77666553 33322 2222 22245688999977665554 5
Q ss_pred ecCCeEeee
Q psy6213 291 SRVSIIPRA 299 (330)
Q Consensus 291 ~~dg~i~iw 299 (330)
+.+|.|..|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 678887765
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.7 Score=36.82 Aligned_cols=144 Identities=9% Similarity=0.126 Sum_probs=77.2
Q ss_pred eeeeeecccCCcEEEEEc-----------CCC-cEEEEECCC-CCCCceeEEecccccceeEEEEEecCCCEEEEEecCC
Q psy6213 54 CNDVAWSCIEENHIATGA-----------TNG-AVVVWNLGQ-ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG 120 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~-----------~dg-~i~iw~~~~-~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~ 120 (330)
...++|.+ +++++++-. ..+ .|.+++-.+ .........+...-.....+++.+ ++ +++ +...
T Consensus 16 P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~- 90 (367)
T TIGR02604 16 PIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP- 90 (367)
T ss_pred CceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC-
Confidence 37899998 888777643 223 677765432 222223344443344568889886 55 444 4444
Q ss_pred cEEEE-EeecC-----ceeee---eecC----CCCeEEEEEcCCCCcEEEEEecC-------------------CcEEEE
Q psy6213 121 TMRLF-DIRCQ-----ESTKI---FHSN----TESVRDVEFNPHSPYAFASVSEN-------------------GTIQQW 168 (330)
Q Consensus 121 ~i~i~-d~~~~-----~~~~~---~~~~----~~~v~~~~~~~~~~~~~~~~~~d-------------------g~i~i~ 168 (330)
.|..+ |.+.. +.... +... ......++|.|+|. +.++-+.. |.|..+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 44444 44321 11111 2211 23467899999997 45543311 345555
Q ss_pred ecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC
Q psy6213 169 DVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD 205 (330)
Q Consensus 169 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 205 (330)
+... .. ...+.........++|+|+|+++++-..+
T Consensus 170 ~pdg-~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDG-GK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCC-Ce-EEEEecCcCCCccceECCCCCEEEEccCC
Confidence 5543 22 22232222345689999999887765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.078 Score=44.55 Aligned_cols=166 Identities=11% Similarity=0.128 Sum_probs=97.4
Q ss_pred eeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee-eee-ecCCC----CeE-EEEEcCCCCcEEEEEec
Q psy6213 89 QERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST-KIF-HSNTE----SVR-DVEFNPHSPYAFASVSE 161 (330)
Q Consensus 89 ~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~~~~~~~~ 161 (330)
.+..+......+..+-..| +++.+..-+. .++.++++.+.... +.+ ....+ .|+ .+..-..+. -+.+++.
T Consensus 212 ~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~-SLLv~~~ 288 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGF-SLLVVHE 288 (733)
T ss_pred hhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCce-eEEEEcC
Confidence 3333455556778888888 8888776665 67888988754321 111 11111 121 111122333 4778888
Q ss_pred CCcEEEE-ecCCCccce----eeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcC
Q psy6213 162 NGTIQQW-DVRRPEKCF----YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRP 236 (330)
Q Consensus 162 dg~i~i~-d~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 236 (330)
||.|.-| |.+....+. +.++-...++.-+.-..+.+-+++-...|++..+.....+.... ......+.-+++||
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp 367 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSP 367 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCc
Confidence 9988877 666543321 12222223343333333455678888888888887655433322 22334677889999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
.+.++ .+- ..|.++++.+++..
T Consensus 368 ~~~~L-l~e---~~gki~~~~l~Nr~ 389 (733)
T COG4590 368 NQAYL-LSE---DQGKIRLAQLENRN 389 (733)
T ss_pred ccchh-eee---cCCceEEEEecCCC
Confidence 99984 444 38999999988764
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.8 Score=36.15 Aligned_cols=274 Identities=11% Similarity=0.059 Sum_probs=131.5
Q ss_pred cccceEEEEeeCCCeeecC-CCeEEEEEcCC-cceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGLAQPS-RNVFKIFLIKD-TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
...+.++.|..+.+-+++| ++.| |...+ |+--+....... .....+.++.|.+ + ..+++| ..|.| |..
T Consensus 45 ~~~l~~v~F~d~~~g~avG~~G~i--l~T~DgG~tW~~~~~~~~---~~~~~l~~v~~~~-~-~~~~~G-~~g~i--~~S 114 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGSNRTL--LETNDGGETWEERSLDLP---EENFRLISISFKG-D-EGWIVG-QPSLL--LHT 114 (334)
T ss_pred CCceEEEEEeCCCcEEEEECCCEE--EEEcCCCCCceECccCCc---ccccceeeeEEcC-C-cEEEeC-CCceE--EEE
Confidence 3468889998555557777 6643 43333 332222111100 1122357787765 3 344444 44543 333
Q ss_pred CCC-CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee-ecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 82 GQI-SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF-HSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 82 ~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
... ...+....-.........+.... .+..++ ++..|.|..=+ +.++.=..+ ......+..+.+.|++. ++..
T Consensus 115 ~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~--~v~~ 189 (334)
T PRK13684 115 TDGGKNWTRIPLSEKLPGSPYLITALG-PGTAEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGK--YVAV 189 (334)
T ss_pred CCCCCCCeEccCCcCCCCCceEEEEEC-CCccee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCe--EEEE
Confidence 321 11222211001111122222221 233333 34445443322 223222211 22345688999999875 4445
Q ss_pred ecCCcEEEEecCCCccceee-eccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc-eec---cccceEEEEE
Q psy6213 160 SENGTIQQWDVRRPEKCFYQ-FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY-SIN---TIASVSRIKW 234 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~---~~~~v~~~~~ 234 (330)
+..|.+..- .+..++.... ...-...++++.+.++++.++++ ..|.+++=....+..-.. ..+ ....+..+.+
T Consensus 190 g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~ 267 (334)
T PRK13684 190 SSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAY 267 (334)
T ss_pred eCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEE
Confidence 556655432 1121221222 22334678899999998876665 457665422333322111 111 2245788999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCccceEee---cCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT---EHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.|++.. ++.+. +|.+.. ....++. -.... .-....+.+.|..+++.+ ..+..|.|..|+.
T Consensus 268 ~~~~~~-~~~G~---~G~v~~-S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~G~il~~~~ 330 (334)
T PRK13684 268 RTPGEI-WAGGG---NGTLLV-SKDGGKT-WEKDPVGEEVPSNFYKIVFLDPEKGF-VLGQRGVLLRYVG 330 (334)
T ss_pred cCCCCE-EEEcC---CCeEEE-eCCCCCC-CeECCcCCCCCcceEEEEEeCCCceE-EECCCceEEEecC
Confidence 998874 55554 776653 3333332 22221 122357788887666554 4677888887753
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=95.00 E-value=3.2 Score=38.98 Aligned_cols=281 Identities=8% Similarity=-0.018 Sum_probs=139.3
Q ss_pred cccceEEEEeeCC-----CeeecC----CCeEEEEEcCCcc-eeeeeceeeccccccccceeeee--ecccCCcEEEEEc
Q psy6213 4 LSPVHKHGLKADN-----GLAQPS----RNVFKIFLIKDTE-FVETHNLRVGKNINLNFSCNDVA--WSCIEENHIATGA 71 (330)
Q Consensus 4 ~~~v~~~~~s~~~-----~~~~~g----d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~ 71 (330)
-+||..++.-... +.++|+ ||.++|..-.-+- .....+++. + ..+..+. +.+.-.++|+.+-
T Consensus 353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G--i----kg~w~lk~~v~~~~d~ylvlsf 426 (1096)
T KOG1897|consen 353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG--I----KGMWSLKSMVDENYDNYLVLSF 426 (1096)
T ss_pred ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC--c----cceeEeeccccccCCcEEEEEe
Confidence 3677777776533 345544 9999998643221 111112221 1 1123444 4443344666554
Q ss_pred CCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 72 TNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 72 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
.+ .-++..+.. .-......+.......+..+-..++.|+=... ..|++++-. .....+... ..++....+.+
T Consensus 427 ~~-eTrvl~i~~---e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n 498 (1096)
T KOG1897|consen 427 IS-ETRVLNISE---EVEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA--GLRSEWRPP-GKITIGVVSAN 498 (1096)
T ss_pred cc-ceEEEEEcc---ceEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch--hhhhcccCC-CceEEEEEeec
Confidence 43 455666654 11111222333333444444334555444443 367877754 234444433 33444444444
Q ss_pred CCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCC------CEEEEEecCCcEEEEeC-CCCccccce-e
Q psy6213 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH------AWLATASRDKTIKVWDL-SIKPSLEYS-I 223 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~-~~~~~~~~~-~ 223 (330)
.. .++.++.++.+...++...+-....-......|.|+.++|-| ++++.|..+..+.+.-. ......... .
T Consensus 499 ~s-qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l 577 (1096)
T KOG1897|consen 499 AS-QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL 577 (1096)
T ss_pred ce-EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc
Confidence 44 366666667777777765431112222345789999999842 37888887766555432 222111111 1
Q ss_pred c---cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee---cCCCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 224 N---TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT---EHKDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 224 ~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
. -+..+.-..+-.|..+|+++.+ ||.+.-|-+..........+ --..|+.=-.|+..++.-+-+..|.-..
T Consensus 578 ~~~~iPRSIl~~~~e~d~~yLlvalg---dG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~v 654 (1096)
T KOG1897|consen 578 SGEIIPRSILLTTFEGDIHYLLVALG---DGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTV 654 (1096)
T ss_pred CCCccchheeeEEeeccceEEEEEcC---CceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEE
Confidence 1 1234555566667788777775 99988776654332111111 1224555455655444333344455555
Q ss_pred eeecc
Q psy6213 298 RAKNI 302 (330)
Q Consensus 298 iw~~~ 302 (330)
+|...
T Consensus 655 iY~~n 659 (1096)
T KOG1897|consen 655 IYSSN 659 (1096)
T ss_pred EEecC
Confidence 55433
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.9 Score=38.29 Aligned_cols=153 Identities=10% Similarity=0.126 Sum_probs=89.6
Q ss_pred CCeeecC-CCeEEEEEcCCcceeee----ece--ee---------ccccccccceeeeeecc-cCCcEEEEEcCCCcEEE
Q psy6213 16 NGLAQPS-RNVFKIFLIKDTEFVET----HNL--RV---------GKNINLNFSCNDVAWSC-IEENHIATGATNGAVVV 78 (330)
Q Consensus 16 ~~~~~~g-d~~i~iw~~~~~~~~~~----~~~--~~---------~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~i 78 (330)
..++..+ .+.|.||+++.-..... ... .. .........|+-+.... .+...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 5555555 99999999875322110 000 00 00001112233333221 15678889999999999
Q ss_pred EECCCC----------CC-------CceeEEecccccceeEEEEE--ecCCCEEEEEecCCcEEEEEeecCcee--e-ee
Q psy6213 79 WNLGQI----------SR-------SKQERVFNDHKRTVNKVSFH--YVESNWLISGSQDGTMRLFDIRCQEST--K-IF 136 (330)
Q Consensus 79 w~~~~~----------~~-------~~~~~~~~~~~~~i~~i~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~--~-~~ 136 (330)
|.++.- .. .++...+. -...+++++++ . ..+++|+++....|.+|-+...... . .-
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEeccccccccccc
Confidence 976320 00 01111111 33578899987 5 6788888888888888866542111 1 01
Q ss_pred ecCCCCeEEEEEcCCC--C---cEEEEEecCCcEEEEec
Q psy6213 137 HSNTESVRDVEFNPHS--P---YAFASVSENGTIQQWDV 170 (330)
Q Consensus 137 ~~~~~~v~~~~~~~~~--~---~~~~~~~~dg~i~i~d~ 170 (330)
..+...|.+++|-++. . ..+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1245668899998765 2 15778889999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.25 Score=38.22 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=48.0
Q ss_pred cceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceE------ee-------cCCCCeEEEEEecCCCEEEEeecC
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLAS------FT-------EHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
.++.. +..+++++++... +|.+++||+.+.+..+.. +. .....|..+..+.+|.-|++-+ +
T Consensus 13 s~~~~--l~~~~~~Ll~iT~---~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-n 86 (219)
T PF07569_consen 13 SPVSF--LECNGSYLLAITS---SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-N 86 (219)
T ss_pred CceEE--EEeCCCEEEEEeC---CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-C
Confidence 34444 4456777777765 999999999987643222 22 3456789999998998887765 5
Q ss_pred CeEeeeec
Q psy6213 294 SIIPRAKN 301 (330)
Q Consensus 294 g~i~iw~~ 301 (330)
|..+.|+.
T Consensus 87 g~~y~y~~ 94 (219)
T PF07569_consen 87 GDSYSYSP 94 (219)
T ss_pred CCEEEecc
Confidence 77788763
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.31 Score=37.76 Aligned_cols=66 Identities=8% Similarity=0.133 Sum_probs=48.8
Q ss_pred EcCCCCEEEEEecCCcEEEEeCCCCccccce------e--------ccccceEEEEEcCCCCeEEEEeecccCCeEEEEE
Q psy6213 192 WHPEHAWLATASRDKTIKVWDLSIKPSLEYS------I--------NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257 (330)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~--------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d 257 (330)
+..++.++++.+.+|.+++||+.+.+..... . .....|..+.++.+|.- +++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~P-iV~ls---ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVP-IVTLS---NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCE-EEEEe---CCCEEEec
Confidence 3446889999999999999999988542222 1 24467888999988885 55555 78889998
Q ss_pred ccCC
Q psy6213 258 IRRP 261 (330)
Q Consensus 258 ~~~~ 261 (330)
..-.
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 7644
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.0052 Score=51.64 Aligned_cols=144 Identities=13% Similarity=0.161 Sum_probs=93.5
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK 134 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 134 (330)
-...|-| ++.-++.++.+..+..||-.. +..... ..++....++|..+.+..++.+-..+.+++||+.+... .
T Consensus 38 i~~~w~~-e~~nlavaca~tiv~~YD~ag----q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-q 110 (615)
T KOG2247|consen 38 IIHRWRP-EGHNLAVACANTIVIYYDKAG----QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-Q 110 (615)
T ss_pred ceeeEec-CCCceehhhhhhHHHhhhhhc----ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-H
Confidence 3456788 555588888888898998654 222222 23456677888863444555667788999999975432 2
Q ss_pred eeec-CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcE
Q psy6213 135 IFHS-NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTI 208 (330)
Q Consensus 135 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 208 (330)
+++. ....-.-+.|++..+ .++.+...|.+.+++..+.. .....-.|...++++++.+.+. .+.++.|..+
T Consensus 111 qLE~gg~~s~sll~wsKg~~-el~ig~~~gn~viynhgtsR-~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHGTSR-RIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred HHhccCcchHHHHhhccCCc-cccccccccceEEEeccchh-hhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence 2221 122222267888888 47788889999999998743 3333444888999999998765 4444444443
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.44 Score=35.43 Aligned_cols=30 Identities=13% Similarity=0.064 Sum_probs=25.6
Q ss_pred CeEEEEEecC------CCEEEEeecCCeEeeeeccc
Q psy6213 274 VVSGLAWRGD------PQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 274 ~v~~~~~~~~------~~~l~s~~~dg~i~iw~~~~ 303 (330)
.+.+++|||. +.+|++.+.+|.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 6889999993 45899999999999998664
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=94.48 E-value=4.4 Score=38.23 Aligned_cols=165 Identities=17% Similarity=0.210 Sum_probs=98.9
Q ss_pred CCcccceEEEEe---e----CCCeeecC-CCeEEEEEcCCcce-------------eeeeceeeccccccccceeeeeec
Q psy6213 2 AYLSPVHKHGLK---A----DNGLAQPS-RNVFKIFLIKDTEF-------------VETHNLRVGKNINLNFSCNDVAWS 60 (330)
Q Consensus 2 ~H~~~v~~~~~s---~----~~~~~~~g-d~~i~iw~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~ 60 (330)
+-..+|..|+|. . ..+++++- ...+.|+...-.+. .....+..... -.++..+++|+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~t--gg~~~aDv~Fn 154 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDT--GGFPHADVAFN 154 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhc--CCCccceEEec
Confidence 345789999998 3 22355555 88888888332211 00011111111 12334789999
Q ss_pred ccCCcEEEEEcCCCcEEEEECCCCC-C-CceeEEecccc----------cceeEEEEEecCCCEEEEEecCCcEEEEEee
Q psy6213 61 CIEENHIATGATNGAVVVWNLGQIS-R-SKQERVFNDHK----------RTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 61 ~~~~~~l~~~~~dg~i~iw~~~~~~-~-~~~~~~~~~~~----------~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~ 128 (330)
|.+...||+....|...||++.... . .........+. ..-..+.|.+ +.+.|++++. ..+.++|++
T Consensus 155 P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r-~~l~~~d~~ 232 (765)
T PF10214_consen 155 PWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR-SKLMLIDFE 232 (765)
T ss_pred cCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-CceEEEECC
Confidence 9888899999999999999992211 1 11111111111 2234778886 6677777775 579999998
Q ss_pred cCceee-e-eecCCCCeEEEEEcCCCCc-EEEEEecCCcEEEEecCC
Q psy6213 129 CQESTK-I-FHSNTESVRDVEFNPHSPY-AFASVSENGTIQQWDVRR 172 (330)
Q Consensus 129 ~~~~~~-~-~~~~~~~v~~~~~~~~~~~-~~~~~~~dg~i~i~d~~~ 172 (330)
+..... . .......|..+.-+|.... +|+.. ...|...|+..
T Consensus 233 ~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 233 SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred CCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 776533 2 2224467889988887332 33332 35688888876
|
These proteins are found in fungi. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.38 E-value=4.3 Score=37.70 Aligned_cols=134 Identities=16% Similarity=0.270 Sum_probs=70.7
Q ss_pred eeecC-CCeEEEEEcCCcceeeeeceee----------------ccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 18 LAQPS-RNVFKIFLIKDTEFVETHNLRV----------------GKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 18 ~~~~g-d~~i~iw~~~~~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.+... |+.+.+||-....+.. .+... -......+.|..+..+| +|.+++..+..| |.|-.
T Consensus 35 NLl~~~d~~L~vWd~~e~~l~~-~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~-~g~~lal~G~~~-v~V~~ 111 (717)
T PF10168_consen 35 NLLACRDGDLFVWDSSECCLLT-VNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNP-TGSLLALVGPRG-VVVLE 111 (717)
T ss_pred eeEEEeCCEEEEEECCCCEEEE-EeeccccccccCccccCcceeecCCCCceeEEEEEECC-CCCEEEEEcCCc-EEEEE
Confidence 35556 8888888876543321 11111 11223457789999999 999999888765 55555
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCC---CcEEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHS---PYAFA 157 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~ 157 (330)
+.. +......+.+-+..|.|=.+.= +..++ . ......|..+.|+|.+ . .|+
T Consensus 112 LP~--r~g~~~~~~~g~~~i~Crt~~v-~~~~~-~---------------------~~~~~~i~qv~WhP~s~~~~-~l~ 165 (717)
T PF10168_consen 112 LPR--RWGKNGEFEDGKKEINCRTVPV-DERFF-T---------------------SNSSLEIKQVRWHPWSESDS-HLV 165 (717)
T ss_pred ecc--ccCccccccCCCcceeEEEEEe-chhhc-c---------------------CCCCceEEEEEEcCCCCCCC-eEE
Confidence 532 0111112222222232222211 11111 0 1123456677787763 4 466
Q ss_pred EEecCCcEEEEecCCCccceeee
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQF 180 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~ 180 (330)
+-..|+++++||+.....+...+
T Consensus 166 vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEecCCEEEEEecCCCCCCeEEE
Confidence 66777888888887655444433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.3 Score=36.30 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=47.8
Q ss_pred ccceEEEEeeCCCeeecCCCeEEEEEcCCcc-ee-------------------eeecee--------eccccccc-----
Q psy6213 5 SPVHKHGLKADNGLAQPSRNVFKIFLIKDTE-FV-------------------ETHNLR--------VGKNINLN----- 51 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~gd~~i~iw~~~~~~-~~-------------------~~~~~~--------~~~~~~~~----- 51 (330)
....+++||.||+++++.+..|.|.+..... .. ..+..+ ........
T Consensus 5 s~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s 84 (173)
T PF12657_consen 5 SCPNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEIS 84 (173)
T ss_pred CCCcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccccccc
Confidence 4457899999999977777778888433211 00 000000 00000111
Q ss_pred -cceeeeeecc-----cCCcEEEEEcCCCcEEEEECCC
Q psy6213 52 -FSCNDVAWSC-----IEENHIATGATNGAVVVWNLGQ 83 (330)
Q Consensus 52 -~~v~~~~~~~-----~~~~~l~~~~~dg~i~iw~~~~ 83 (330)
..+.+++||| ..+.+|++.+.+|.|.||....
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 1578899998 2245788889999999998654
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=94.34 E-value=2.2 Score=41.27 Aligned_cols=139 Identities=13% Similarity=0.226 Sum_probs=84.9
Q ss_pred cCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecC--------CCEEEEEecCCcEEEEEeecCcee---------
Q psy6213 71 ATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE--------SNWLISGSQDGTMRLFDIRCQEST--------- 133 (330)
Q Consensus 71 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--------~~~l~~~~~d~~i~i~d~~~~~~~--------- 133 (330)
+.|+.+.+|+.++ ......+.+....|..+..-... ..+|+.++ --.|.++-+.-.+..
T Consensus 96 TiDn~L~lWny~~---~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 96 TIDNNLFLWNYES---DNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred EeCCeEEEEEcCC---CCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCcccccccc
Confidence 4578899999998 45555566666667666543111 22344443 456777655322111
Q ss_pred eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEE--ecCCC---c----------------cceeeec-cCCCCeEEEE
Q psy6213 134 KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW--DVRRP---E----------------KCFYQFT-AHSGPIFACD 191 (330)
Q Consensus 134 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~--d~~~~---~----------------~~~~~~~-~~~~~i~~~~ 191 (330)
..+......|.++....+|+ +| .++.||.|+-. ....+ . ..+..+. .+..+|..++
T Consensus 172 ~~i~~dg~~V~~I~~t~nGR-IF-~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENGR-IF-FAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eeeecCCceEEEEEeccCCc-EE-EeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 12222355788999888887 45 45566654422 21111 0 0011223 4567999999
Q ss_pred EcCCCCEEEEEecCCcEEEEeCCC
Q psy6213 192 WHPEHAWLATASRDKTIKVWDLSI 215 (330)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~i~d~~~ 215 (330)
....-+.+.+-+..|+|.+||+..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 998888999999999999999976
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.7 Score=32.87 Aligned_cols=109 Identities=12% Similarity=0.111 Sum_probs=62.5
Q ss_pred EEEEEecCCCEEEEEec--CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceee
Q psy6213 102 KVSFHYVESNWLISGSQ--DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ 179 (330)
Q Consensus 102 ~i~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~ 179 (330)
.+.+. ++.++.+.+. ...|++||+.+++.+....-....+..=-...-++++..-.-.+|.-..+|.++ -+.+..
T Consensus 50 GL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~ 126 (262)
T COG3823 50 GLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGR 126 (262)
T ss_pred ceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcc
Confidence 44444 5677776654 346999999999877655433212211111122344455556788888898887 444443
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC
Q psy6213 180 FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK 216 (330)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 216 (330)
+. ..+.=..++. |+..|+.+.....++.-|.++.
T Consensus 127 ~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 127 FS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred cc-cCCcceeeec--CCcceEeeCCceEEEecCHHHh
Confidence 33 2333344443 4555666666667777776655
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.99 Score=38.57 Aligned_cols=80 Identities=13% Similarity=0.250 Sum_probs=54.9
Q ss_pred ecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCC-eEEEEEcCC-----------------CCc
Q psy6213 93 FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES-VRDVEFNPH-----------------SPY 154 (330)
Q Consensus 93 ~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-v~~~~~~~~-----------------~~~ 154 (330)
+......+.+++.+| .+++.++...-|.|.++|+.++..++.+++-.+. +.-+..... ..+
T Consensus 303 l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 303 LPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 344556688999999 7888888877899999999999888887764432 111111111 123
Q ss_pred EEEEEecCCcEEEEecCCC
Q psy6213 155 AFASVSENGTIQQWDVRRP 173 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~ 173 (330)
+++-+-.-|.|.+|.++++
T Consensus 382 LvIyaprRg~lEvW~~~~g 400 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQG 400 (415)
T ss_pred EEEEeccCCeEEEEecCCC
Confidence 4555677888999999873
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=2.4 Score=33.98 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=115.7
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES- 132 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~- 132 (330)
+.++.++ +++...+..+.-++|.|+.++....++..+.. .+--.++.. .+++..++..|.-+.+.|+.+.+.
T Consensus 89 ~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 89 FADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCc
Confidence 4566665 46777777777899999998766666555543 233444443 588888888666778888876543
Q ss_pred --eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCC-CeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 133 --TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSG-PIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 133 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
...+......-..++.+ |++ ...+..|+-+.+.|+.++..+...-.-..+ .+.++..+++..+++...+ -+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~-AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNY-AYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCe-EEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceE
Confidence 33344344444566666 443 556678889999999987666543333333 6788888877666555443 466
Q ss_pred EEeCCCCcccccee--ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 210 VWDLSIKPSLEYSI--NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 210 i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
+-|..+.+...... ....++.--.+.-.+++....-+ +.-+.+-|++++..
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadg---a~gl~~idisnp~s 289 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADG---AKGLPIIDISNPPS 289 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceecccceeeeecc---ccCceeEeccCCCC
Confidence 77776664322221 12222211122223444333332 66677777776543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.9 Score=32.65 Aligned_cols=104 Identities=9% Similarity=0.080 Sum_probs=57.7
Q ss_pred CCCe-eecC---CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCcee
Q psy6213 15 DNGL-AQPS---RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQE 90 (330)
Q Consensus 15 ~~~~-~~~g---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 90 (330)
+|.+ .++| ...|++||+.+++.....++....... ..++.+ ....-+..-.+|.-..+|.++ .+++
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~Fg--EGit~~-----gd~~y~LTw~egvaf~~d~~t---~~~l 124 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFG--EGITKL-----GDYFYQLTWKEGVAFKYDADT---LEEL 124 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccc--cceeec-----cceEEEEEeccceeEEEChHH---hhhh
Confidence 4555 6777 778999999998877665555211111 111111 223333445678888888877 4555
Q ss_pred EEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 91 RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 91 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
..+. ..+.-..++.. +.+ |+.+....+++.-|.++...
T Consensus 125 g~~~-y~GeGWgLt~d--~~~-LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 125 GRFS-YEGEGWGLTSD--DKN-LIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred cccc-cCCcceeeecC--Ccc-eEeeCCceEEEecCHHHhhh
Confidence 4443 33455556532 344 44444445677767655433
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=94.09 E-value=2.7 Score=34.22 Aligned_cols=166 Identities=14% Similarity=0.273 Sum_probs=88.0
Q ss_pred cEEEEEeecCceeeeeec------CCCCeEEEEEcCCC-----CcEEEEEecCCcEEEEecCCCccceeeecc-------
Q psy6213 121 TMRLFDIRCQESTKIFHS------NTESVRDVEFNPHS-----PYAFASVSENGTIQQWDVRRPEKCFYQFTA------- 182 (330)
Q Consensus 121 ~i~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~------- 182 (330)
+|.+||+++.+.++++.- ..+.+..+.+.... .+.+++=...+-|.++|+.++ +..+.+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~-~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATG-KSWRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTT-EEEEEETCGCTTS-S
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCC-cEEEEecCCcceecc
Confidence 577788888777666543 23567778777632 233444444567999999873 22222111
Q ss_pred ------------CCCCeEEEEEcC---CCCEEEEEecCCcEEEEeCCCC-----cc---c-----cceecc-ccceEEEE
Q psy6213 183 ------------HSGPIFACDWHP---EHAWLATASRDKTIKVWDLSIK-----PS---L-----EYSINT-IASVSRIK 233 (330)
Q Consensus 183 ------------~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~-----~~---~-----~~~~~~-~~~v~~~~ 233 (330)
....+..++.+| +++.|.-....+ -++|.+.+. .. . ....+. ......++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 123366677765 666666665433 233333221 11 1 011111 23566788
Q ss_pred EcCCCCeEEEEeecccCCeEEEEEccCCCcc--ceEe-e-cC-CCCeEEEEEec--CCCEEEEee
Q psy6213 234 WRPQRKFHLASCSLVVDSSVNVWDIRRPYIP--LASF-T-EH-KDVVSGLAWRG--DPQLFIASS 291 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~--~~~~-~-~~-~~~v~~~~~~~--~~~~l~s~~ 291 (330)
++++|.. +.+-- ..+.|..|+..++..+ ...+ . .. -..+.++.+.+ +|.+-+.+.
T Consensus 193 ~D~~G~l-y~~~~--~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 193 IDPNGNL-YFTDV--EQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EETTTEE-EEEEC--CCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred ECCCCcE-EEecC--CCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 8998885 44444 5999999999873211 1122 1 11 24678888888 666555543
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=93.78 E-value=3.4 Score=34.32 Aligned_cols=105 Identities=4% Similarity=0.022 Sum_probs=51.3
Q ss_pred CCCEEEEEecC-----CcEEEEEeecCcee---eeeecCCCCe--EEEEEcCCCCcEEEEEec-----CCcEEEEecCCC
Q psy6213 109 ESNWLISGSQD-----GTMRLFDIRCQEST---KIFHSNTESV--RDVEFNPHSPYAFASVSE-----NGTIQQWDVRRP 173 (330)
Q Consensus 109 ~~~~l~~~~~d-----~~i~i~d~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~~~~~~~~-----dg~i~i~d~~~~ 173 (330)
++.+++.|+.+ ..+..+|+.+.+.. ..+.....+. .+++.. ++. +++.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~-iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGT-LYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCE-EEEEeCcCCCccCceEEEEcCCCC
Confidence 56677777754 35667777665431 1221111111 122222 333 6777764 235888888763
Q ss_pred cc-ceeeeccCCCCeEEEEEcCCCCEEEEEecCCc----EEEEeCCCC
Q psy6213 174 EK-CFYQFTAHSGPIFACDWHPEHAWLATASRDKT----IKVWDLSIK 216 (330)
Q Consensus 174 ~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~----i~i~d~~~~ 216 (330)
.= .+..+... ......+..-++++.+.|+.++. +..||..+.
T Consensus 150 ~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 150 EWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 21 11111111 11112222335777788876543 567888765
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.2 Score=40.61 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=72.2
Q ss_pred ceEEEEeeCCC--e-eecC-CCeEEEEEcCC-----cce-------eeeeceeeccccccccceeeeeec--ccCCcEEE
Q psy6213 7 VHKHGLKADNG--L-AQPS-RNVFKIFLIKD-----TEF-------VETHNLRVGKNINLNFSCNDVAWS--CIEENHIA 68 (330)
Q Consensus 7 v~~~~~s~~~~--~-~~~g-d~~i~iw~~~~-----~~~-------~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~ 68 (330)
|+-|....=|. . ++|. ||.|.+|..++ .+. .........-...+..++..++++ . ..++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEE
Confidence 45554444333 2 4555 99999998743 011 000111111222344567888887 6 778899
Q ss_pred EEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecC--CC---EEEEEecCCcEEEEEe
Q psy6213 69 TGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE--SN---WLISGSQDGTMRLFDI 127 (330)
Q Consensus 69 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~---~l~~~~~d~~i~i~d~ 127 (330)
+++....|.||-............-..+...|-+|+|.+.+ +. .+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 98888888888765421111111112366789999998633 22 7788888999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.7 Score=30.30 Aligned_cols=106 Identities=13% Similarity=0.089 Sum_probs=66.1
Q ss_pred EEEcCCCCEEEEEecCCcEEEEeCCCCcc-------ccceeccccceEEEEEcC----CCCeEEEEeecccCCeEEEEEc
Q psy6213 190 CDWHPEHAWLATASRDKTIKVWDLSIKPS-------LEYSINTIASVSRIKWRP----QRKFHLASCSLVVDSSVNVWDI 258 (330)
Q Consensus 190 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~~~~~~----~~~~l~~~~~~~~~~~i~i~d~ 258 (330)
-.|......|++++.-|+|.|++...... ......-...|++++-.+ ++.-+|..++ ...+..||+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt---~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT---QTSLLAYDV 80 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec---cceEEEEEc
Confidence 45666667888999999999998765422 223444456677775433 2334566665 899999999
Q ss_pred cCCCccceEeecCCCCeEEEEEec---CCCEEEEeecCCeEeeee
Q psy6213 259 RRPYIPLASFTEHKDVVSGLAWRG---DPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 259 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~iw~ 300 (330)
..... +. .+.-.+.|+++.+-. ...-|+..+.+..|.=|+
T Consensus 81 ~~N~d-~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 81 ENNSD-LF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFD 123 (136)
T ss_pred ccCch-hh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeC
Confidence 98765 22 223346788887744 223344445566666554
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=93.36 E-value=3.6 Score=33.28 Aligned_cols=94 Identities=10% Similarity=0.253 Sum_probs=56.8
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc------CCCcEEEEECCCCCCCceeEEecc-
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA------TNGAVVVWNLGQISRSKQERVFND- 95 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~- 95 (330)
-..|++||.++.+....-. .+...|+++.|.. +.++++.|. ....+..||..+ .....+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~-------~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~----~~w~~~~~~ 82 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGN-------GISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKN----QTWSSLGGG 82 (281)
T ss_pred CCEEEEEECCCCEeecCCC-------CceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCC----CeeeecCCc
Confidence 5679999998866543222 1455589999985 677777764 345688899876 22223332
Q ss_pred ----cccceeEEEEEecCCCEEE-EEe-cCC--cEEEEEee
Q psy6213 96 ----HKRTVNKVSFHYVESNWLI-SGS-QDG--TMRLFDIR 128 (330)
Q Consensus 96 ----~~~~i~~i~~~~~~~~~l~-~~~-~d~--~i~i~d~~ 128 (330)
-.+++..+.+...+...+. .|. .++ .|..||=.
T Consensus 83 ~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 83 SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 2477888887544544444 333 223 45556543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.26 E-value=4.3 Score=33.83 Aligned_cols=147 Identities=14% Similarity=0.232 Sum_probs=83.1
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCc------EEEEecCCCcc---ce-----eeeccCCC--------CeEEEEEcCCCCE
Q psy6213 141 ESVRDVEFNPHSPYAFASVSENGT------IQQWDVRRPEK---CF-----YQFTAHSG--------PIFACDWHPEHAW 198 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~dg~------i~i~d~~~~~~---~~-----~~~~~~~~--------~i~~~~~~~~~~~ 198 (330)
+.+..+.+.+++. .+++.+++|. ++.+++..... .+ ..+....+ ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4567888886555 4666677777 66665543110 01 11111111 2337788778888
Q ss_pred EEEEecC------CcEEEEeCCCCcccc---------------ceeccccceEEEEEcCCCCeEEEEeecc--cCC----
Q psy6213 199 LATASRD------KTIKVWDLSIKPSLE---------------YSINTIASVSRIKWRPQRKFHLASCSLV--VDS---- 251 (330)
Q Consensus 199 l~~~~~d------g~i~i~d~~~~~~~~---------------~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~~~---- 251 (330)
+++.-.+ ..|.-++.. ++... ...........++++|+|+.+++..... .|+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7777777 778888866 32211 1122356788999999999655554311 121
Q ss_pred -----eEEEE--EccCCCcc----ceEeec-----CCCCeEEEEEecCCCEEEE
Q psy6213 252 -----SVNVW--DIRRPYIP----LASFTE-----HKDVVSGLAWRGDPQLFIA 289 (330)
Q Consensus 252 -----~i~i~--d~~~~~~~----~~~~~~-----~~~~v~~~~~~~~~~~l~s 289 (330)
.++++ |..+...+ ...+.. ....|..+.+-+++++|+-
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 14554 44442211 122221 3467889999999986654
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.11 E-value=3.7 Score=32.67 Aligned_cols=240 Identities=10% Similarity=0.060 Sum_probs=130.5
Q ss_pred ceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 7 VHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
-+.++-.|||.. +... .+.|--.|..+|+..... +..+.. ...+..-| ++..-++-+.. .|.-.|-++.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~------Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~ 134 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP-LGSGAS------PHGIVVGP-DGSAWITDTGL-AIGRLDPKTL 134 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEe-cCCCCC------CceEEECC-CCCeeEecCcc-eeEEecCccc
Confidence 456677788866 5555 777777787777754332 222211 14555566 55555543332 3444444442
Q ss_pred CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec-CCCCeEEEEEcCCCCcEEEEEecCC
Q psy6213 85 SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS-NTESVRDVEFNPHSPYAFASVSENG 163 (330)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~dg 163 (330)
+..+.....+.-........|.+ .+++-+++.. |.---.|.. ...+..+.. .......++..|+|+ +.++.-.+.
T Consensus 135 evt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagn 210 (353)
T COG4257 135 EVTRFPLPLEHADANLETAVFDP-WGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGS-VWYASLAGN 210 (353)
T ss_pred ceEEeecccccCCCcccceeeCC-CccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCc-EEEEecccc
Confidence 11111112223345677888887 8888888752 211111211 112333332 233456788899998 566666667
Q ss_pred cEEEEecCCCccceeeec-cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec-cccceEEEEEcCCCCeE
Q psy6213 164 TIQQWDVRRPEKCFYQFT-AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN-TIASVSRIKWRPQRKFH 241 (330)
Q Consensus 164 ~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 241 (330)
.|-..|.......+.... .....-..+--+|.|..-++....+.+..||.....-...... ......++.....++.-
T Consensus 211 aiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW 290 (353)
T COG4257 211 AIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVW 290 (353)
T ss_pred ceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEE
Confidence 787788776422222111 1123445566677888888877788899988776532222222 23445566666666532
Q ss_pred EEEeecccCCeEEEEEccCCC
Q psy6213 242 LASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 242 ~~~~~~~~~~~i~i~d~~~~~ 262 (330)
+.-. ..|.|.-+|.++..
T Consensus 291 ~sea---~agai~rfdpeta~ 308 (353)
T COG4257 291 LSEA---DAGAIGRFDPETAR 308 (353)
T ss_pred eecc---ccCceeecCcccce
Confidence 3222 36677777766554
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.64 Score=24.74 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=27.1
Q ss_pred CCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEE
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAW 280 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 280 (330)
|++++++++.. .++.|.++|..+... +..+.. ......++|
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~-~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKV-IATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeE-EEEEEC-CCCCceEEe
Confidence 67888888776 689999999987754 444443 233344444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=93.10 E-value=8.3 Score=36.75 Aligned_cols=177 Identities=15% Similarity=0.187 Sum_probs=99.4
Q ss_pred eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCc-EEEEEcC-----------CCcEEEEECCCCCCCceeEE
Q psy6213 25 VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEEN-HIATGAT-----------NGAVVVWNLGQISRSKQERV 92 (330)
Q Consensus 25 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~ 92 (330)
.|++.|..+++.......... ...+++.++.|+..+.. +++++.. +|.++.|++-.. +..+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~n---e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~--g~~lel 928 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQN---EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRN--GDKLEL 928 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCC---cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEec--Cceeee
Confidence 588888888776666555443 44566788888763333 4444432 344667765442 222222
Q ss_pred ec--ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec--CCCCeEEEEEcCCCCcEEEEEecCCcEEEE
Q psy6213 93 FN--DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS--NTESVRDVEFNPHSPYAFASVSENGTIQQW 168 (330)
Q Consensus 93 ~~--~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~ 168 (330)
+. .-.+.+.+ ..|..+ ++++|- ...+++||+...++++..+. ....|..+++.. . .+++|...-.+..+
T Consensus 929 lh~T~~~~~v~A--i~~f~~-~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~--~-RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen 929 LHKTEIPGPVGA--ICPFQG-RVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG--A-RIVVGDIQESVHFV 1001 (1205)
T ss_pred eeccCCCccceE--EeccCC-EEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEeecc--e-EEEEeeccceEEEE
Confidence 22 22244444 445344 444433 45899999987776655442 245567777653 3 36666665556655
Q ss_pred ecCCCccceeeecc--CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCC
Q psy6213 169 DVRRPEKCFYQFTA--HSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214 (330)
Q Consensus 169 d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 214 (330)
-.+.....+..+-. -...++++.+- |...++.+..=|.+.+-.+.
T Consensus 1002 ~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1002 RYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 55544444444433 23456666665 44457777666766665543
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.63 Score=24.41 Aligned_cols=30 Identities=13% Similarity=0.395 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCCcEEEEEecC--CcEEEE
Q psy6213 139 NTESVRDVEFNPHSPYAFASVSEN--GTIQQW 168 (330)
Q Consensus 139 ~~~~v~~~~~~~~~~~~~~~~~~d--g~i~i~ 168 (330)
....-....|+|+|++++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445677889999999888887777 666665
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=92.95 E-value=5.1 Score=33.87 Aligned_cols=192 Identities=18% Similarity=0.238 Sum_probs=109.3
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEe---cCCCE--EEEEe-cC---CcEEEEEeecC-ce
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHY---VESNW--LISGS-QD---GTMRLFDIRCQ-ES 132 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~~--l~~~~-~d---~~i~i~d~~~~-~~ 132 (330)
...+++....++-+.+||+.. +.++.+. .+..+.+.... .+++. |+.++ .+ .+|++|.+... ..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~G----k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDG----KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-----EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred ccceEEEEeCCCCEEEEcCCC----cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 456777778888999999985 5555553 23444433321 12332 44444 22 46999988732 12
Q ss_pred eeeeec-------CCCCeEEEEE--cC-CCCcEEEEEecCCcEEEEecCCCc------cceeeeccCCCCeEEEEEcCCC
Q psy6213 133 TKIFHS-------NTESVRDVEF--NP-HSPYAFASVSENGTIQQWDVRRPE------KCFYQFTAHSGPIFACDWHPEH 196 (330)
Q Consensus 133 ~~~~~~-------~~~~v~~~~~--~~-~~~~~~~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~ 196 (330)
+..+.. ....+..+++ +| ++...++....+|.+..|.+...+ +.++.|.. ...+-.+......
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDET 219 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTT
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEeccc
Confidence 222221 1234566665 33 455556677888999888775321 24556653 4578888898888
Q ss_pred CEEEEEecCCcEEEEeCCCCcc----cccee---ccccceEEEEEc--CCC-CeEEEEeecccCCeEEEEEccCCCc
Q psy6213 197 AWLATASRDKTIKVWDLSIKPS----LEYSI---NTIASVSRIKWR--PQR-KFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 197 ~~l~~~~~dg~i~i~d~~~~~~----~~~~~---~~~~~v~~~~~~--~~~-~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
..|..+-++.-|.-|+.+.... ..... .....+..+++- +++ .||+++.. .+++..+|+.+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ--G~~sf~Vy~r~~~~~ 294 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ--GDNSFAVYDREGPNA 294 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG--GGTEEEEEESSTT--
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC--CCCeEEEEecCCCCc
Confidence 8999999988888887763311 11111 123567777664 344 47777776 689999999876543
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.83 E-value=3.4 Score=31.57 Aligned_cols=138 Identities=10% Similarity=0.129 Sum_probs=78.7
Q ss_pred EEEEecCCcEEEEecCCC-ccceeeeccCCCCeEEEEEcCCCCEEEEEecCC------cEEEE---eCCC-C-ccc----
Q psy6213 156 FASVSENGTIQQWDVRRP-EKCFYQFTAHSGPIFACDWHPEHAWLATASRDK------TIKVW---DLSI-K-PSL---- 219 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~---d~~~-~-~~~---- 219 (330)
++.+.....|.+|++.+. .+....+.. -+.|..+.++..|++++|--.+. .+|+| +... . ...
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 434366678999999842 344555553 48899999999999999876432 45564 2220 0 000
Q ss_pred ------------------cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc-----cceEee-----cC
Q psy6213 220 ------------------EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI-----PLASFT-----EH 271 (330)
Q Consensus 220 ------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~-----~~~~~~-----~~ 271 (330)
....+...++.+++-.|-...|++++ ++.+.+|.+..... ....+. -|
T Consensus 110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~----~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC----GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc----CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 01112234667777777655556654 88999998764321 011111 11
Q ss_pred C-CCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 272 K-DVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 272 ~-~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
. -.+..+++. +.++|..+ +-.+++.+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence 1 124555664 45676655 445666553
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.54 Score=24.68 Aligned_cols=30 Identities=13% Similarity=0.382 Sum_probs=21.5
Q ss_pred cccceEEEEEcCCCCeEEEEeecccC--CeEEEE
Q psy6213 225 TIASVSRIKWRPQRKFHLASCSLVVD--SSVNVW 256 (330)
Q Consensus 225 ~~~~v~~~~~~~~~~~l~~~~~~~~~--~~i~i~ 256 (330)
....-....|+|||++++.+.. .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~--~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSN--RNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEE--CT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEec--CCCCCCcCEE
Confidence 4456778899999999888887 45 655555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=92.50 E-value=9.6 Score=35.94 Aligned_cols=187 Identities=11% Similarity=0.156 Sum_probs=103.7
Q ss_pred cEEEEEcCCCcEEEEECCCCCCCceeE-----EecccccceeEEEEEe-cCCCEEEEEecC---CcEEEEEeec--C---
Q psy6213 65 NHIATGATNGAVVVWNLGQISRSKQER-----VFNDHKRTVNKVSFHY-VESNWLISGSQD---GTMRLFDIRC--Q--- 130 (330)
Q Consensus 65 ~~l~~~~~dg~i~iw~~~~~~~~~~~~-----~~~~~~~~i~~i~~~~-~~~~~l~~~~~d---~~i~i~d~~~--~--- 130 (330)
.-+++-...|.+++|-.+...+..... .+......++..++.+ .+++.++.++.+ +.|++|.+.- +
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~ 142 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKP 142 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence 455666778999999774432222222 1222345566555552 355555555544 7888886531 0
Q ss_pred -----c--eeeeee----c-----------------CCCCeEEEEEcC------CCCcEEEEEec----CCcEEEEecCC
Q psy6213 131 -----E--STKIFH----S-----------------NTESVRDVEFNP------HSPYAFASVSE----NGTIQQWDVRR 172 (330)
Q Consensus 131 -----~--~~~~~~----~-----------------~~~~v~~~~~~~------~~~~~~~~~~~----dg~i~i~d~~~ 172 (330)
+ +...+. . .-..++.+.|-+ ..+.++++.+. ...|..|.++.
T Consensus 143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 0 000000 0 112456677665 23334544432 34699999876
Q ss_pred Cccceeee--------------------c-----cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccce----e
Q psy6213 173 PEKCFYQF--------------------T-----AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYS----I 223 (330)
Q Consensus 173 ~~~~~~~~--------------------~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~ 223 (330)
....+... . ...+.|.++....-+..++..-.||+|.++|..+.+.+... .
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~ 302 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE 302 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence 43222211 0 01245677777777889999999999999998877443322 1
Q ss_pred c---------------cccceEEEEEcCCCCeEEEEeecccCCeEE
Q psy6213 224 N---------------TIASVSRIKWRPQRKFHLASCSLVVDSSVN 254 (330)
Q Consensus 224 ~---------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~ 254 (330)
. ...++..++|||.+.-++... .+|.+.
T Consensus 303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~---~~~~~~ 345 (753)
T PF11635_consen 303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID---EDGKTK 345 (753)
T ss_pred CccccccccccccccccCCCCceEEECcccceEEEEe---cCCCce
Confidence 0 112344578999988655554 377755
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.84 Score=41.10 Aligned_cols=74 Identities=15% Similarity=0.287 Sum_probs=44.0
Q ss_pred CCcEEEEEcCCCcEEEEECCC---CCCCceeEEecc--------------------cccceeEEEEEe---cCCCEEEEE
Q psy6213 63 EENHIATGATNGAVVVWNLGQ---ISRSKQERVFND--------------------HKRTVNKVSFHY---VESNWLISG 116 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~~--------------------~~~~i~~i~~~~---~~~~~l~~~ 116 (330)
+...++.+..||.+....... ....-....+.. .......++.++ .+..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 667788888899888877654 111101111111 112344444443 267899999
Q ss_pred ecCCcEEEEEeecCceeeee
Q psy6213 117 SQDGTMRLFDIRCQESTKIF 136 (330)
Q Consensus 117 ~~d~~i~i~d~~~~~~~~~~ 136 (330)
+.|+++++||+.+++++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999986654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=92.18 E-value=5.4 Score=32.34 Aligned_cols=219 Identities=11% Similarity=0.111 Sum_probs=121.0
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCC----CCceeEEecc-----cccceeEEEEEecCC------------CEE
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQIS----RSKQERVFND-----HKRTVNKVSFHYVES------------NWL 113 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~-----~~~~i~~i~~~~~~~------------~~l 113 (330)
..++++| .+.+-++....+...+||..... .......+.. .....+.+.|+. .. ..+
T Consensus 26 WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 26 WGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF 103 (336)
T ss_pred ceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence 6799999 88887877778899999987210 1122333331 234677888874 22 236
Q ss_pred EEEecCCcEEEEEeecCce-----eeeeec-CCCCe-EEEEEc--CCCCcEEEEEecCCcEEEEecCCCccceee---ec
Q psy6213 114 ISGSQDGTMRLFDIRCQES-----TKIFHS-NTESV-RDVEFN--PHSPYAFASVSENGTIQQWDVRRPEKCFYQ---FT 181 (330)
Q Consensus 114 ~~~~~d~~i~i~d~~~~~~-----~~~~~~-~~~~v-~~~~~~--~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~---~~ 181 (330)
+.+++||+|.-|...-... ...+.. ....| ..+++. ..+.++.++--.+++|.+||-.- .++.. +.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f--~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF--RPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc--ccccCCCCcc
Confidence 7788999999998532222 122221 12333 344544 33566677777789999998653 11111 11
Q ss_pred cC-----CCC-----------eEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccce--eccccceEEEEEcC------C
Q psy6213 182 AH-----SGP-----------IFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYS--INTIASVSRIKWRP------Q 237 (330)
Q Consensus 182 ~~-----~~~-----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~------~ 237 (330)
.. -.+ |+-..-.+++..=+.+..-|.|-+||.... .+.+. ...-.....++..| .
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~s 260 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLS 260 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCC
Confidence 00 000 111111112222222334467999998765 22222 22234556676655 3
Q ss_pred CCeEEEEeecccCCeEEEEEccCCCccceEeecCC------CCeEEEEEec
Q psy6213 238 RKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK------DVVSGLAWRG 282 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~~ 282 (330)
+. ||++-- .||+|..||..++.. +-.+.... ..++.++|..
T Consensus 261 g~-lLVGNF--GDG~InaFD~~sG~~-~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 261 GA-LLVGNF--GDGTINAYDPQSGAQ-LGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CC-eEEeec--CCceeEEecCCCCce-eeeecCCCCCeEEecCeEEeeeCC
Confidence 44 455555 599999999988765 33333322 3568888865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=92.16 E-value=9.1 Score=34.90 Aligned_cols=158 Identities=11% Similarity=0.141 Sum_probs=80.5
Q ss_pred cccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee--eeeec-CCCCeEEEEEcC-----CCCcEEEEEec-C---C
Q psy6213 96 HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST--KIFHS-NTESVRDVEFNP-----HSPYAFASVSE-N---G 163 (330)
Q Consensus 96 ~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~-~~~~v~~~~~~~-----~~~~~~~~~~~-d---g 163 (330)
-++.|..+.+.+ ++..+++...+|.|.+||...+... ..+.. +...+.--.|-+ ++..++++.+. + -
T Consensus 128 l~~kvv~Ik~~~-~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 128 LDDKVVGIKFSS-DGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cccceEEEEEec-CCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 367889999996 8899999999999999999322211 12211 111111102222 22223444333 2 2
Q ss_pred cEEEEecCCCccceeeec---cCCCCeE--EEEEcCCCCEEEEEecCCcEEEEeCCCCccccc-----eeccc-cceEEE
Q psy6213 164 TIQQWDVRRPEKCFYQFT---AHSGPIF--ACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY-----SINTI-ASVSRI 232 (330)
Q Consensus 164 ~i~i~d~~~~~~~~~~~~---~~~~~i~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~-~~v~~~ 232 (330)
..+++.+.........+. .+..... .+++. +|.+..- .++.|.+|++...+.... ..... ..+.++
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl 283 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL 283 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEe
Confidence 367777732233333322 1111222 23333 4544333 677999999987733111 11111 122233
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
. .|....++.+. ++.|++.|+.-..
T Consensus 284 ~-~~s~nRvLLs~----~nkIyLld~~~~s 308 (670)
T PF10395_consen 284 K-PPSPNRVLLSV----NNKIYLLDLKFES 308 (670)
T ss_pred e-cCCCCeEEEEc----CCEEEEEeehhhh
Confidence 2 23333355554 8999999986543
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=91.89 E-value=3.2 Score=29.05 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=67.8
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEecCCCc-------cceeeeccCCCCeEEEEEcC-----CCCEEEEEecCCcEEEEeC
Q psy6213 146 VEFNPHSPYAFASVSENGTIQQWDVRRPE-------KCFYQFTAHSGPIFACDWHP-----EHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~ 213 (330)
-.|....+ .|++++..|+|.+++..... ..+..+. -...|++++-.+ +...|+.|+. ..+..||+
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 45666666 58888889999999876432 1222332 456677776544 3456776665 57999999
Q ss_pred CCCccccceeccccceEEEEEc---CCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 214 SIKPSLEYSINTIASVSRIKWR---PQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
.....+.. ......+.++.+- .....++..++ +..|.-||.+..+
T Consensus 81 ~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGG---ncsi~Gfd~~G~e 128 (136)
T PF14781_consen 81 ENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGG---NCSIQGFDYEGNE 128 (136)
T ss_pred ccCchhhh-hhCccceeEEEEEecCCCCCcEEEECc---eEEEEEeCCCCcE
Confidence 88744433 3334566666652 22223455554 7788888766543
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.84 E-value=6.1 Score=32.21 Aligned_cols=191 Identities=12% Similarity=0.166 Sum_probs=98.4
Q ss_pred cceEEEEeeCCCe--eecC----C--------CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCC----cEE
Q psy6213 6 PVHKHGLKADNGL--AQPS----R--------NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEE----NHI 67 (330)
Q Consensus 6 ~v~~~~~s~~~~~--~~~g----d--------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l 67 (330)
.|..+...++|++ +=+| . -+|.+||+.+++..+.+.++..... .......+.+...++ .+.
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcc-cccccceEEEEccCCCCcceEE
Confidence 3667777788877 3344 1 3899999999999998888764443 223357777655222 233
Q ss_pred EEE-cCCCcEEEEECCCCCCCceeEEeccc-------------------ccceeEEEEEec--CCCEEEEEecCCcEEEE
Q psy6213 68 ATG-ATNGAVVVWNLGQISRSKQERVFNDH-------------------KRTVNKVSFHYV--ESNWLISGSQDGTMRLF 125 (330)
Q Consensus 68 ~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~-------------------~~~i~~i~~~~~--~~~~l~~~~~d~~i~i~ 125 (330)
..+ ...+.|.++|+.+ ++..+.+..+ ...+..++.+|. +++.|.-....+ -++|
T Consensus 81 YItD~~~~glIV~dl~~---~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly 156 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLAT---GKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLY 156 (287)
T ss_dssp EEEETTTCEEEEEETTT---TEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEE
T ss_pred EEeCCCcCcEEEEEccC---CcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEE
Confidence 333 3446799999987 3333333221 122445555441 223444433222 2333
Q ss_pred EeecCc--------------eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc--eeeec---cCCCC
Q psy6213 126 DIRCQE--------------STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC--FYQFT---AHSGP 186 (330)
Q Consensus 126 d~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~--~~~~~---~~~~~ 186 (330)
.+.+.. .+..+-........++++++|. ++++--..+.|..|+..++... ...+. ..-..
T Consensus 157 ~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~ 235 (287)
T PF03022_consen 157 RVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQW 235 (287)
T ss_dssp EEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSS
T ss_pred EEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchheeEEcCceeec
Confidence 333210 1112211123566788889887 7778888889999998863211 11121 11346
Q ss_pred eEEEEEcC--CCCEEEEE
Q psy6213 187 IFACDWHP--EHAWLATA 202 (330)
Q Consensus 187 i~~~~~~~--~~~~l~~~ 202 (330)
+..+.+.+ +|.+.+..
T Consensus 236 pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 236 PDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEEE-T--TS-EEEEE
T ss_pred cceeeeccccCceEEEEE
Confidence 77888887 66544444
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.6 Score=39.26 Aligned_cols=64 Identities=16% Similarity=0.308 Sum_probs=39.6
Q ss_pred EEEEEecCCcEEEEecCC---Cccceee-----------ec-----------cCCCCeEEEEEcC----CCCEEEEEecC
Q psy6213 155 AFASVSENGTIQQWDVRR---PEKCFYQ-----------FT-----------AHSGPIFACDWHP----EHAWLATASRD 205 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~---~~~~~~~-----------~~-----------~~~~~i~~~~~~~----~~~~l~~~~~d 205 (330)
.++.+..||.+....... .+..... +. ...+....++.++ +..++++.+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 577888899888887664 1111110 00 0123455666666 67899999999
Q ss_pred CcEEEEeCCCCcc
Q psy6213 206 KTIKVWDLSIKPS 218 (330)
Q Consensus 206 g~i~i~d~~~~~~ 218 (330)
+.+|+||+.++..
T Consensus 240 ~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 240 HTLRIWSLETGQC 252 (547)
T ss_dssp SEEEEEETTTTCE
T ss_pred CeEEEEECCCCeE
Confidence 9999999999866
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=91.47 E-value=13 Score=35.12 Aligned_cols=198 Identities=12% Similarity=0.119 Sum_probs=104.5
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeeccccc-cccceeeeeecc---------------cCCcEEEEEcCCCcEE
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNIN-LNFSCNDVAWSC---------------IEENHIATGATNGAVV 77 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~---------------~~~~~l~~~~~dg~i~ 77 (330)
++.+.++. ++.|.-.|..+|+.+-.+..+...... ....+..+++.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45555555 888888999988876655543321100 000112233321 1345788888999999
Q ss_pred EEECCCCCCCceeEEeccccccee-------------EEEEEe-cCCCEEEEEec----------CCcEEEEEeecCcee
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVN-------------KVSFHY-VESNWLISGSQ----------DGTMRLFDIRCQEST 133 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~-------------~i~~~~-~~~~~l~~~~~----------d~~i~i~d~~~~~~~ 133 (330)
-.|.++ ++....+.. .+.+. .+.-.| -.+..+++|+. +|.|+-+|.++|+.+
T Consensus 274 ALDA~T---Gk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADT---GKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCC---CCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999887 555544321 11110 001111 02345666642 688999999999987
Q ss_pred eeeecC---------CC--------Ce-EEEEEcCCCCcEEEEEec------------------CCcEEEEecCCCccce
Q psy6213 134 KIFHSN---------TE--------SV-RDVEFNPHSPYAFASVSE------------------NGTIQQWDVRRPEKCF 177 (330)
Q Consensus 134 ~~~~~~---------~~--------~v-~~~~~~~~~~~~~~~~~~------------------dg~i~i~d~~~~~~~~ 177 (330)
-.+... .+ .+ ..+++.++.. +++.+.. .+.|.-.|.+++ +..
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TG-k~~ 427 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTG-KER 427 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCCCC-ceE
Confidence 665421 00 01 2234444444 2333221 234555666663 333
Q ss_pred eeecc--CC-------CCeEEEEEcC-CCC---EEEEEecCCcEEEEeCCCCcc
Q psy6213 178 YQFTA--HS-------GPIFACDWHP-EHA---WLATASRDKTIKVWDLSIKPS 218 (330)
Q Consensus 178 ~~~~~--~~-------~~i~~~~~~~-~~~---~l~~~~~dg~i~i~d~~~~~~ 218 (330)
-.++. |. ....-+.+.. +|+ .++.++.+|.+.++|.++++.
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 22322 21 1112222322 553 789999999999999988854
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.42 E-value=2.5 Score=36.05 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=92.7
Q ss_pred ccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeecccccccccee-eeeecccCCcEEEEEcCCCcEEEE-EC
Q psy6213 5 SPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCN-DVAWSCIEENHIATGATNGAVVVW-NL 81 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~iw-~~ 81 (330)
+.|..+-..|||+.+..- ...+.++++.+...... ++-..........|+ .+..-. .+.-+++++.||.|.-| |.
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeeee
Confidence 456778889999995444 57888888876443222 111110000001112 222222 67778889999988877 44
Q ss_pred CCCCCC--ceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 82 GQISRS--KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 82 ~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
...... ..++.++-...++..+.-. ++.+-+++-+..|++..+.....+.+. ++.--..+.-++++|.+.+++ .
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll--~ 374 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLL--S 374 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchhe--e
Confidence 432221 1222223223444444332 245567788888999888765444332 222233567789999998633 3
Q ss_pred ecCCcEEEEecCCC
Q psy6213 160 SENGTIQQWDVRRP 173 (330)
Q Consensus 160 ~~dg~i~i~d~~~~ 173 (330)
-+.|.++++.+++.
T Consensus 375 e~~gki~~~~l~Nr 388 (733)
T COG4590 375 EDQGKIRLAQLENR 388 (733)
T ss_pred ecCCceEEEEecCC
Confidence 45688999988863
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=91.28 E-value=6.1 Score=31.15 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=72.3
Q ss_pred EEEEecCCCccceeeecc-CCCCeEEEEEcCCCCEEEEEec-C--CcEEEEeCCCC--ccc----cceeccccceEEEEE
Q psy6213 165 IQQWDVRRPEKCFYQFTA-HSGPIFACDWHPEHAWLATASR-D--KTIKVWDLSIK--PSL----EYSINTIASVSRIKW 234 (330)
Q Consensus 165 i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~--~~~----~~~~~~~~~v~~~~~ 234 (330)
-.+||+.+..- +.+.. ...-..+-.+-+||+++.+|+. + ..+++++.... .+. .........-..+.-
T Consensus 48 s~~yD~~tn~~--rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTF--RPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcE--EeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 35788886322 22221 2222334457789999999874 2 34888886541 011 111223344555666
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCC-Cccce--Eeec----CC-CCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRP-YIPLA--SFTE----HK-DVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~-~~~~~--~~~~----~~-~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
-|||+.+++++. ......+|.-... ..... .+.. .. .----+...|||++++.+..+..|.=|+..
T Consensus 126 L~DG~vlIvGG~--~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n 199 (243)
T PF07250_consen 126 LPDGRVLIVGGS--NNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTN 199 (243)
T ss_pred CCCCCEEEEeCc--CCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCC
Confidence 789998777776 4555666654321 11111 1110 00 111234566899999999887776655433
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=91.26 E-value=14 Score=35.10 Aligned_cols=161 Identities=17% Similarity=0.272 Sum_probs=99.8
Q ss_pred ccccceeEEEEE---ec---CCCEEEEEecCCcEEEEEeecC---------------ceeeeee---cCCCCeEEEEEcC
Q psy6213 95 DHKRTVNKVSFH---YV---ESNWLISGSQDGTMRLFDIRCQ---------------ESTKIFH---SNTESVRDVEFNP 150 (330)
Q Consensus 95 ~~~~~i~~i~~~---~~---~~~~l~~~~~d~~i~i~d~~~~---------------~~~~~~~---~~~~~v~~~~~~~ 150 (330)
....+|..|+|. .. ..++|++=. ...+.|+...-. .++..+. ....+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999987 21 123555444 556777772111 2233332 2345778999999
Q ss_pred CCCcEEEEEecCCcEEEEecCCCc----cceeeeccCC----------CCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPE----KCFYQFTAHS----------GPIFACDWHPEHAWLATASRDKTIKVWDLSIK 216 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~----~~~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 216 (330)
.....||.....|...+||+.... ........+. ..-..+.|.++.+.|+.++. ..+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 887789999999999999992111 1111111111 22347889888777877776 57899999887
Q ss_pred cccc--ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 217 PSLE--YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 217 ~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
.... ........|..+.-+|.....+..-. ...|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT---s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT---SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe---cCeEEEEEccC
Confidence 5522 23334577888888888332233333 56777778776
|
These proteins are found in fungi. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=91.22 E-value=6 Score=32.01 Aligned_cols=112 Identities=10% Similarity=0.203 Sum_probs=66.4
Q ss_pred CcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe------cCCcEEEEecCCCccceeeecc-----CCCCeE
Q psy6213 120 GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS------ENGTIQQWDVRRPEKCFYQFTA-----HSGPIF 188 (330)
Q Consensus 120 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~-----~~~~i~ 188 (330)
..|++||..+.+-...-.+-.+.|+.+.|..+.+ +++.|. ....+..||+.+. ....+.. -.+++.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCC--eeeecCCcccccCCCcEE
Confidence 4699999887765554444567899999986655 677664 3556888998863 2333333 246788
Q ss_pred EEEEcC-CCC-EEEEEe-cC--CcEEEEeCCCCccccc-eeccccceEEEEE
Q psy6213 189 ACDWHP-EHA-WLATAS-RD--KTIKVWDLSIKPSLEY-SINTIASVSRIKW 234 (330)
Q Consensus 189 ~~~~~~-~~~-~l~~~~-~d--g~i~i~d~~~~~~~~~-~~~~~~~v~~~~~ 234 (330)
.+.+.. ++. ..+.|. .+ ..|..||-.....+.. .......|..+.+
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 887743 333 343433 23 3477777655544333 2223345555544
|
|
| >KOG1896|consensus | Back alignment and domain information |
|---|
Probab=91.17 E-value=16 Score=35.65 Aligned_cols=180 Identities=8% Similarity=0.117 Sum_probs=92.4
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeec-----c---cCCcEEEEEcC---------CCcEEEEECCC--
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWS-----C---IEENHIATGAT---------NGAVVVWNLGQ-- 83 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~---~~~~~l~~~~~---------dg~i~iw~~~~-- 83 (330)
...|.+.+..+++....+.++..+. +.+++.. . ....+|++|.. -|.+.|+|+-.
T Consensus 1003 ~f~i~LisP~sw~vi~~iefq~~E~------v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVV 1076 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQENEH------VLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVV 1076 (1366)
T ss_pred cceeEEecCCccccccccccCccce------eeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEec
Confidence 3455666666655555444443222 2333321 1 12457777743 38899999743
Q ss_pred --CCCC---ceeEE--ecccccceeEEEEEecCCCEEEEEecCCcEEEEEee-cCceeeeeecCCCCeEEEEEcCCCCcE
Q psy6213 84 --ISRS---KQERV--FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR-CQESTKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 84 --~~~~---~~~~~--~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
+++. ..++. .+..+++|..++=- +|. |+++. ...|.+|+++ ....+..-. -.-++.-....--.+ +
T Consensus 1077 PepgkP~t~~KlKel~~eE~KGtVsavceV--~G~-l~~~~-GqKI~v~~l~r~~~ligVaF-iD~~~yv~s~~~vkn-l 1150 (1366)
T KOG1896|consen 1077 PEPGKPFTKNKLKELYIEEQKGTVSAVCEV--RGH-LLSSQ-GQKIIVRKLDRDSELIGVAF-IDLPLYVHSMKVVKN-L 1150 (1366)
T ss_pred CCCCCCcccceeeeeehhhcccceEEEEEe--ccE-EEEcc-CcEEEEEEeccCCcceeeEE-eccceeEEehhhhhh-h
Confidence 1111 11111 23456778777643 444 44444 3479999994 333322211 111222222222233 4
Q ss_pred EEEEecCCcEEEEecCCCccceeeecc--CCCCeEEEEEcCCCC--EEEEEecCCcEEEEeCC
Q psy6213 156 FASVSENGTIQQWDVRRPEKCFYQFTA--HSGPIFACDWHPEHA--WLATASRDKTIKVWDLS 214 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d~~ 214 (330)
++.|..-..|.+.-.+.....+..+.. ..-.+.++.|--+|. .++++..|+.|++|-..
T Consensus 1151 Il~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1151 ILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred eehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 666666666666666542222222221 223577888877665 57888899999888654
|
|
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=91.08 E-value=17 Score=35.88 Aligned_cols=27 Identities=30% Similarity=0.187 Sum_probs=18.3
Q ss_pred cCCCCeEEEEEecCCCEEEEeecCCeE
Q psy6213 270 EHKDVVSGLAWRGDPQLFIASSRVSII 296 (330)
Q Consensus 270 ~~~~~v~~~~~~~~~~~l~s~~~dg~i 296 (330)
+|-..+.+++.+|||...++-..+-.|
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCchhh
Confidence 344578889999999877764443333
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=90.80 E-value=12 Score=34.46 Aligned_cols=69 Identities=16% Similarity=0.343 Sum_probs=46.4
Q ss_pred ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEec
Q psy6213 97 KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV 170 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~ 170 (330)
...++++.-+| ++.-++.+..||.|++|+.......+... ...|-..+.|...| ++++..|..+.-|.-
T Consensus 14 ~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg---l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG---LVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc---eEEEeccchhheeec
Confidence 34567788888 88999999999999999987655433332 22344456666555 555666666666653
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=90.68 E-value=9.5 Score=32.31 Aligned_cols=189 Identities=12% Similarity=0.110 Sum_probs=103.6
Q ss_pred CCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEc----CCCCcE-EEEEe-cC---CcEEEEecCCCccceee
Q psy6213 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFN----PHSPYA-FASVS-EN---GTIQQWDVRRPEKCFYQ 179 (330)
Q Consensus 109 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-~~~~~-~d---g~i~i~d~~~~~~~~~~ 179 (330)
...+++....++-+.+||+. |+.+..+.. +.++.+..- -.++.. ++.++ .+ ..|++|.+......+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 45677788888899999997 666666642 334433321 123322 33433 32 46999977632222332
Q ss_pred ecc-------CCCCeEEEEEc--C-CCC-EEEEEecCCcEEEEeCCCC-c-----cccceeccccceEEEEEcCCCCeEE
Q psy6213 180 FTA-------HSGPIFACDWH--P-EHA-WLATASRDKTIKVWDLSIK-P-----SLEYSINTIASVSRIKWRPQRKFHL 242 (330)
Q Consensus 180 ~~~-------~~~~i~~~~~~--~-~~~-~l~~~~~dg~i~i~d~~~~-~-----~~~~~~~~~~~v~~~~~~~~~~~l~ 242 (330)
+.. ....+..+++- | +|. +.+....+|.+..|.+... . .+.........+..+.......+|+
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 221 12346677763 3 344 5667788899888887532 1 1333444556788889988888755
Q ss_pred EEeecccCCeEEEEEccCCC--cc--ceEeec--CCCCeEEEEEec--C--CCEEEEeecCCeEeeeeccc
Q psy6213 243 ASCSLVVDSSVNVWDIRRPY--IP--LASFTE--HKDVVSGLAWRG--D--PQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 243 ~~~~~~~~~~i~i~d~~~~~--~~--~~~~~~--~~~~v~~~~~~~--~--~~~l~s~~~dg~i~iw~~~~ 303 (330)
++ . ++--|.-|+.+... .. +....+ ....|.+|+.-. + |.+|+|.-.+++..+|+...
T Consensus 224 vg-E--E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 224 VG-E--EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EE-E--TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred Ee-c--CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 54 4 57778888776322 11 212222 335788887753 3 34566666678899998653
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=90.55 E-value=5.7 Score=34.72 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=52.7
Q ss_pred cccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC------CCCcee---EEe--------cccccceeEEEEEecC-
Q psy6213 48 INLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI------SRSKQE---RVF--------NDHKRTVNKVSFHYVE- 109 (330)
Q Consensus 48 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~------~~~~~~---~~~--------~~~~~~i~~i~~~~~~- 109 (330)
..+.+.|..+..++ .|..++.++.+|.+.++=.... +.++.. +++ ....-.+...+|+|..
T Consensus 100 ~~V~feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 100 NPVLFEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSI 178 (741)
T ss_pred CcceEEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCcc
Confidence 34567788999999 9999999999986555431110 001111 111 1112345678899955
Q ss_pred -CCEEEEEecCCcEEEEEeecCc
Q psy6213 110 -SNWLISGSQDGTMRLFDIRCQE 131 (330)
Q Consensus 110 -~~~l~~~~~d~~i~i~d~~~~~ 131 (330)
+..|..-+.|..+++||+....
T Consensus 179 ~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 179 LDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred CCceEEEEecCcEEEEEecCCcc
Confidence 5677777889999999986543
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=90.11 E-value=1.4 Score=23.34 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=25.1
Q ss_pred CCCEEE-EEecCCcEEEEEeecCceeeeeecCCCCeEEEEE
Q psy6213 109 ESNWLI-SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEF 148 (330)
Q Consensus 109 ~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 148 (330)
+++.|+ +...+++|.++|..+++.+..+... .....++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 444444 4556889999999888887777653 33334443
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=89.76 E-value=10 Score=31.22 Aligned_cols=224 Identities=12% Similarity=0.065 Sum_probs=0.0
Q ss_pred cEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee-----------
Q psy6213 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST----------- 133 (330)
Q Consensus 65 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----------- 133 (330)
++|+.|+.+| +.+.+... ......--.+...|.++...+..+-+++.++....++.+++..-...
T Consensus 14 ~~lL~GTe~G-ly~~~~~~---~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 14 KWLLVGTEEG-LYVLNISD---QPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred cEEEEEeCCc-eEEEEccc---CCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Q ss_pred ----eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec-------cCCCCeEEEEEcCC--CCEEE
Q psy6213 134 ----KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT-------AHSGPIFACDWHPE--HAWLA 200 (330)
Q Consensus 134 ----~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~i~~~~~~~~--~~~l~ 200 (330)
...-.+................++++....+|.++....+......++ ....++..+..+++ ...++
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Q ss_pred EEecCCcEEEEeCCC--Ccc----ccceecccc-ceEEEEEcCCCCeEEEEeecccCCeEEEEEccC-CCccceEeecCC
Q psy6213 201 TASRDKTIKVWDLSI--KPS----LEYSINTIA-SVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR-PYIPLASFTEHK 272 (330)
Q Consensus 201 ~~~~dg~i~i~d~~~--~~~----~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~~~ 272 (330)
.|+..+...++++.. ... ......... ...++..-+++.++++- +....+.|... ... ....-.-.
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~-----~~~~v~Vn~~G~~~~-r~~~l~w~ 243 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY-----DEFGVFVNLYGKRRS-RNPILHWE 243 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE-----CcEEEEEeCCCCccc-cceEEEcC
Q ss_pred CCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 273 DVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 273 ~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
....++++ ...+|+.-..++ |.+++.
T Consensus 244 ~~p~~~~~--~~pyll~~~~~~-ievr~l 269 (302)
T smart00036 244 FMPESFAY--HSPYLLAFHDNG-IEIRSI 269 (302)
T ss_pred CcccEEEE--ECCEEEEEcCCc-EEEEEC
|
Unpublished observations. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=89.60 E-value=13 Score=32.40 Aligned_cols=57 Identities=12% Similarity=-0.151 Sum_probs=35.0
Q ss_pred ccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecc
Q psy6213 5 SPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSC 61 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 61 (330)
..-+.|+|.|||+++++. .|.|++++..++.......+..-....-......|+++|
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P 88 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP 88 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC
Confidence 346789999999997777 499999986654432222221100000133458899998
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=89.50 E-value=14 Score=32.35 Aligned_cols=112 Identities=9% Similarity=0.096 Sum_probs=63.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc-c----cee--ccccceEEEEEcCCC------CeEEEEeeccc
Q psy6213 183 HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL-E----YSI--NTIASVSRIKWRPQR------KFHLASCSLVV 249 (330)
Q Consensus 183 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~----~~~--~~~~~v~~~~~~~~~------~~l~~~~~~~~ 249 (330)
.-.....|+|.|+|++|++--..|.|++++..+.... . ... ........++++|+- .++.++.+...
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 3456789999999987777655699999986544221 1 011 135678999999884 34555542101
Q ss_pred -------CCeEEEEEccCCC----ccceEeecC----CCCeEEEEEecCCCEEEEeecCC
Q psy6213 250 -------DSSVNVWDIRRPY----IPLASFTEH----KDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 250 -------~~~i~i~d~~~~~----~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
...|.-|.+.... .....+... ...-..|+|.|||.+.++.+..+
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 2345445543210 001112111 11245678999998777666543
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=89.41 E-value=23 Score=34.87 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=82.5
Q ss_pred eeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccc-cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCcee
Q psy6213 13 KADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLN-FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQE 90 (330)
Q Consensus 13 s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 90 (330)
-|.=..+-.. |+.+.+|+.+++.-...+..-.+.+..+. ..+..=.|.| .=++++.-..--.|.++-+...+.....
T Consensus 87 FpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~ilgV~~~~~~~~~ 165 (1311)
T KOG1900|consen 87 FPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVILGVSFDEFTGEL 165 (1311)
T ss_pred chhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh-hhheeEEecccceEEEEEEEeccccCcc
Confidence 3333333344 99999999998554443333222221110 0001112334 2233333333445666655332211111
Q ss_pred EE------ecccccceeEEEEEecCCCEEEEEecCCcEEEEEee--cC---c-e----------------eeeee-cCCC
Q psy6213 91 RV------FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR--CQ---E-S----------------TKIFH-SNTE 141 (330)
Q Consensus 91 ~~------~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~---~-~----------------~~~~~-~~~~ 141 (330)
.. +......|.++... .+|+.+++|- ||.|+-.-.+ .+ + + +..+. .+.+
T Consensus 166 ~~f~~~~~i~~dg~~V~~I~~t-~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 166 SIFNTSFKISVDGVSVNCITYT-ENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred cccccceeeecCCceEEEEEec-cCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 22 22234678888855 3677666654 5644322211 11 0 0 11122 3567
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCc
Q psy6213 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~ 174 (330)
+|..++....-. ++.+-++.|+|.+||+...+
T Consensus 244 pI~qi~ID~SR~-IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 244 PIRQITIDNSRN-ILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred cceeeEeccccc-eeeeeccCceEEEEEccCCC
Confidence 899999987766 78899999999999998643
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=89.01 E-value=21 Score=33.76 Aligned_cols=71 Identities=14% Similarity=0.174 Sum_probs=44.1
Q ss_pred CcEEEEEcCCCcEEEEECCCCCCCceeEEeccccc--------ceeEEEEEe---------------cCCCEEEEEecCC
Q psy6213 64 ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKR--------TVNKVSFHY---------------VESNWLISGSQDG 120 (330)
Q Consensus 64 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------~i~~i~~~~---------------~~~~~l~~~~~d~ 120 (330)
++.++.++.++.|.-.|..+ ++.+-.+..... ....+.+.. ..+..++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~T---Gk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAAT---GKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCC---CcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 45666677777787777776 444433322111 122233321 1234788888999
Q ss_pred cEEEEEeecCceeeeee
Q psy6213 121 TMRLFDIRCQESTKIFH 137 (330)
Q Consensus 121 ~i~i~d~~~~~~~~~~~ 137 (330)
.+.-.|.++++....+.
T Consensus 271 ~LiALDA~TGk~~W~fg 287 (764)
T TIGR03074 271 RLIALDADTGKLCEDFG 287 (764)
T ss_pred eEEEEECCCCCEEEEec
Confidence 99999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.84 E-value=16 Score=32.42 Aligned_cols=272 Identities=11% Similarity=0.028 Sum_probs=131.5
Q ss_pred ccceEEEEeeCCCeeecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 5 SPVHKHGLKADNGLAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
.+|.++.+...|.+.++.+.-+..||..+++..+....+..+. |..+.-+ -...+.+|+.+| +.+.+.+.
T Consensus 165 ~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~~~dk~------I~al~~d--~qg~LWVGTdqG-v~~~e~~G- 234 (671)
T COG3292 165 TPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASPPLDKA------INALIAD--VQGRLWVGTDQG-VYLQEAEG- 234 (671)
T ss_pred ccceeeeeeccCcEEEecCCcceEEccccceEEEcCCCcchhh------HHHHHHH--hcCcEEEEeccc-eEEEchhh-
Confidence 4677888888888766664446677877777665544443221 2333333 355677788776 66766554
Q ss_pred CCCceeEEec-ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec--CCCCeEEEEEcCCCCcEEEEEec
Q psy6213 85 SRSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS--NTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 85 ~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
.+...... -..+.|..+.-. ....+-.|+..|..+.---+.+-.....+. .-+.|.++....+|. +-+++.
T Consensus 235 --~~~sn~~~~lp~~~I~ll~qD--~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs--LWv~t~ 308 (671)
T COG3292 235 --WRASNWGPMLPSGNILLLVQD--AQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS--LWVGTY 308 (671)
T ss_pred --ccccccCCCCcchheeeeecc--cCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC--Eeeecc
Confidence 11111111 122334443322 344566677666443322221111111121 224566777777776 677777
Q ss_pred CCcEEEEecCCCccceeeeccCCCC-eEEEEEcC--CCCEEEEEecCCcEEEEeCCCCccccceec-cccceEEEEEcCC
Q psy6213 162 NGTIQQWDVRRPEKCFYQFTAHSGP-IFACDWHP--EHAWLATASRDKTIKVWDLSIKPSLEYSIN-TIASVSRIKWRPQ 237 (330)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~ 237 (330)
+|.+++-+-. -.....+....+. +...+..| .+..+--...-|.+.+-+-.++........ -...|+.+++..+
T Consensus 309 ~giv~~~~a~--w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~ 386 (671)
T COG3292 309 GGIVRYLTAD--WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSR 386 (671)
T ss_pred CceEEEecch--hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccC
Confidence 7766655432 1111112211111 11111122 111111111112233333333322111111 1245666777776
Q ss_pred CCeEEEEeecccCCeEEEEEccCCCccceEee-cCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 238 RKFHLASCSLVVDSSVNVWDIRRPYIPLASFT-EHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
+..-+.+ ..+-+..|+..+...++.... ...++|..+.=.|+++ |..++.+|.++.=
T Consensus 387 g~lWlgs----~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~~ 444 (671)
T COG3292 387 GRLWLGS----MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKRD 444 (671)
T ss_pred CcEEEEe----cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEecC
Confidence 6643333 254566666665222222222 2346788888889888 7778888877653
|
|
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=88.77 E-value=25 Score=34.40 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=25.2
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCC
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQ 83 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 83 (330)
...++|+| ...++|.+...|.|+++-...
T Consensus 38 ~~~~afD~-~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 38 PSALAFDP-TQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred Ccceeecc-ccceEEEEEecccEEEecccc
Confidence 46789999 999999999999999997543
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=87.72 E-value=15 Score=30.77 Aligned_cols=23 Identities=9% Similarity=0.211 Sum_probs=15.3
Q ss_pred CCCEEEEEecC-----------CcEEEEEeecCc
Q psy6213 109 ESNWLISGSQD-----------GTMRLFDIRCQE 131 (330)
Q Consensus 109 ~~~~l~~~~~d-----------~~i~i~d~~~~~ 131 (330)
++.+.+.|+.+ ..+..||..+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 67777777753 246778876554
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=87.32 E-value=6 Score=25.58 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=32.5
Q ss_pred ecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEE
Q psy6213 203 SRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257 (330)
Q Consensus 203 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d 257 (330)
..+|.+.-||..+++ .......-...+.+++++|+.+++++=. ....|.=|-
T Consensus 34 ~~~GRll~ydp~t~~-~~vl~~~L~fpNGVals~d~~~vlv~Et--~~~Ri~ryw 85 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKE-TTVLLDGLYFPNGVALSPDESFVLVAET--GRYRILRYW 85 (89)
T ss_dssp ---EEEEEEETTTTE-EEEEEEEESSEEEEEE-TTSSEEEEEEG--GGTEEEEEE
T ss_pred CCCcCEEEEECCCCe-EEEehhCCCccCeEEEcCCCCEEEEEec--cCceEEEEE
Confidence 346778889988873 3333334457889999999998777755 344444333
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=87.32 E-value=21 Score=31.90 Aligned_cols=228 Identities=9% Similarity=0.083 Sum_probs=108.4
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEeccc-ccceeEEEEEecCCCEEEEEecCCcEEEEEee--cCceeeeeecC
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDH-KRTVNKVSFHYVESNWLISGSQDGTMRLFDIR--CQESTKIFHSN 139 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~ 139 (330)
++..++.+..+|.+....+..... ......-+. .....++.+...++.+++.|+.-|.=.++.+. .-+.+..+. .
T Consensus 221 ~~~~~lL~~e~G~l~~l~l~~~~~-~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N 298 (504)
T PF10433_consen 221 DGDRILLQDEDGDLYLLTLDNDGG-SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-N 298 (504)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEE-EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE---
T ss_pred CCCEEEEEeCCCeEEEEEEEECCC-eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-C
Confidence 677888999999999888766321 111222222 45667777774122388888876654454444 333444454 4
Q ss_pred CCCeEEEEEcCC---CC-------cEEEEEe--cCCcEEEEecCCCcc-ceeeeccCC--CCeEEEEEcC-CCCEEEEEe
Q psy6213 140 TESVRDVEFNPH---SP-------YAFASVS--ENGTIQQWDVRRPEK-CFYQFTAHS--GPIFACDWHP-EHAWLATAS 203 (330)
Q Consensus 140 ~~~v~~~~~~~~---~~-------~~~~~~~--~dg~i~i~d~~~~~~-~~~~~~~~~--~~i~~~~~~~-~~~~l~~~~ 203 (330)
-+||.+++..+. +. .++++++ .+|.+++..-.-+-. ......... ..+..+.... ++.+|+.+.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 578998888532 11 3444433 467788774321111 011111122 2333333322 245777666
Q ss_pred cCCcEEEEeCC---CCcccc-----ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee-cCCCC
Q psy6213 204 RDKTIKVWDLS---IKPSLE-----YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT-EHKDV 274 (330)
Q Consensus 204 ~dg~i~i~d~~---~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~~ 274 (330)
.+ .-+++.+. ...... ........+.+-.+. + .. ++=.. ...|++.+....+. ..... .....
T Consensus 379 ~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~-~~-ivQVt---~~~i~l~~~~~~~~-~~~w~~~~~~~ 450 (504)
T PF10433_consen 379 PN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-D-GR-IVQVT---PKGIRLIDLEDGKL-TQEWKPPAGSI 450 (504)
T ss_dssp SS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-T-TE-EEEEE---SSEEEEEESSSTSE-EEEEE-TTS--
T ss_pred CC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-C-Ce-EEEEe---cCeEEEEECCCCeE-EEEEeCCCCCe
Confidence 54 44455554 121211 111112223333333 3 32 33333 67788998876654 33332 23445
Q ss_pred eEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 275 VSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 275 v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
|.+.+. ++..++.+-.++.+..++..
T Consensus 451 I~~a~~--~~~~v~v~~~~~~~~~~~~~ 476 (504)
T PF10433_consen 451 IVAASI--NDPQVLVALSGGELVYFELD 476 (504)
T ss_dssp -SEEEE--SSSEEEEEE-TTEEEEEEEE
T ss_pred EEEEEE--CCCEEEEEEeCCcEEEEEEE
Confidence 666555 34556666667788777643
|
... |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=87.09 E-value=7.5 Score=36.65 Aligned_cols=92 Identities=14% Similarity=0.032 Sum_probs=59.4
Q ss_pred CEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeec-c--cCCeEEEEEccCCCccceEeecCCC
Q psy6213 197 AWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSL-V--VDSSVNVWDIRRPYIPLASFTEHKD 273 (330)
Q Consensus 197 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~--~~~~i~i~d~~~~~~~~~~~~~~~~ 273 (330)
++.......+.|.+-|...............++..-.|||||+.++.+.+. . ....|++-|+.+...-+..+.....
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~a 399 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENA 399 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccc
Confidence 333333344588888888764444436778899999999999997773441 1 1235889999866543455555566
Q ss_pred CeEEEEEecCCCEEE
Q psy6213 274 VVSGLAWRGDPQLFI 288 (330)
Q Consensus 274 ~v~~~~~~~~~~~l~ 288 (330)
.|..-...++|...+
T Consensus 400 aiprwrv~e~gdt~i 414 (912)
T TIGR02171 400 AIPRWRVLENGDTVI 414 (912)
T ss_pred cccceEecCCCCeEE
Confidence 666666666665443
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.01 E-value=16 Score=30.30 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCcEEEEEcCC-----CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC----cEEEEEeecCce
Q psy6213 63 EENHIATGATN-----GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG----TMRLFDIRCQES 132 (330)
Q Consensus 63 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~ 132 (330)
++.+.+.|+.. ..+..||+.+. +...+..+... .......... ++++.+.|+.++ .+..||.++.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~-~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQ-EWFELPDFPGE-PRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCC-CeeECCCCCCC-CCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCee
Confidence 56677777642 35778887752 23332222211 1111222222 677788887654 356788876543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=86.85 E-value=6.5 Score=37.02 Aligned_cols=87 Identities=10% Similarity=0.078 Sum_probs=56.1
Q ss_pred EEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC-----cEEEEecCCCccceeeeccCCCC
Q psy6213 112 WLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG-----TIQQWDVRRPEKCFYQFTAHSGP 186 (330)
Q Consensus 112 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~ 186 (330)
+.+.....+.|.+-|.........-..+..++.+-+|+|||+++..+.+.++ .|++-|+++.+.-+..+......
T Consensus 321 iAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aa 400 (912)
T TIGR02171 321 LAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAA 400 (912)
T ss_pred EEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccccc
Confidence 3333333358888888765554431336788999999999997655244443 48999999866655555555556
Q ss_pred eEEEEEcCCCCE
Q psy6213 187 IFACDWHPEHAW 198 (330)
Q Consensus 187 i~~~~~~~~~~~ 198 (330)
|..-...++|..
T Consensus 401 iprwrv~e~gdt 412 (912)
T TIGR02171 401 IPRWRVLENGDT 412 (912)
T ss_pred ccceEecCCCCe
Confidence 655555665543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=86.33 E-value=15 Score=35.90 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=22.4
Q ss_pred cCCCCEEEEEecCCcEEEEeCCCC
Q psy6213 193 HPEHAWLATASRDKTIKVWDLSIK 216 (330)
Q Consensus 193 ~~~~~~l~~~~~dg~i~i~d~~~~ 216 (330)
++++..++++..||.+..||...+
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCC
Confidence 778999999999999999999886
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 330 | ||||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 2e-14 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 9e-08 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 9e-14 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-13 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-06 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 5e-13 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-06 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 7e-13 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 5e-08 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 7e-13 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 5e-08 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-12 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 5e-08 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-10 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 4e-10 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 4e-10 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-07 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 1e-08 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-08 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 1e-08 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 2e-08 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-08 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-08 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-08 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-08 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-08 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-08 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-08 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-08 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 3e-08 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 3e-08 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-08 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-08 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 3e-08 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-08 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 3e-08 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-08 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-08 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 4e-08 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 5e-08 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-08 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 2e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 9e-05 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-07 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 9e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-07 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 2e-07 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-07 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-07 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-07 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 3e-07 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 3e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-06 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 8e-06 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 1e-06 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-06 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-06 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-06 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-06 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 2e-06 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 3e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-06 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 4e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 4e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 9e-05 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 7e-06 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-06 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 1e-05 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-05 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 7e-05 | ||
| 3ei4_B | 436 | Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | 9e-05 | ||
| 4e54_B | 435 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 1e-04 | ||
| 4e5z_B | 436 | Damaged Dna Induced Uv-Damaged Dna-Binding Protein | 1e-04 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 1e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 3e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 5e-04 |
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436 | Back alignment and structure |
|
| >pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435 | Back alignment and structure |
|
| >pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.98 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.97 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.97 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.97 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.97 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.96 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.96 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.96 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.95 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.95 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.95 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.95 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.95 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.94 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.94 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.94 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.94 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.94 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.93 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.92 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.92 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.92 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.91 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.91 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.91 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.9 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.9 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.9 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.89 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.88 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.87 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.86 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.86 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.86 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.86 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.86 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.85 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.85 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.85 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.84 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.84 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.83 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.83 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.82 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.81 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.81 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.81 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.8 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.8 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.8 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.79 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.79 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.79 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.79 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.78 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.77 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.77 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.77 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.76 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.75 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.74 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.73 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.72 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.71 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.7 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.69 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.69 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.69 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.68 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.67 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.67 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.67 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.66 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.66 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.65 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.64 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.63 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.63 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.62 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.61 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.6 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.59 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.57 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.57 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.55 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.5 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.48 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.46 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.45 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.43 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.42 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.41 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.39 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.37 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.35 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.35 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.33 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.31 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.31 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.29 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.29 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.29 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.28 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.26 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.25 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.25 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.25 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.23 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.23 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.19 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.17 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.16 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.14 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.13 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.12 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.11 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.08 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.08 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.08 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.07 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.07 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.06 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.06 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.06 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.05 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.01 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.01 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.0 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.0 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.0 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.97 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.97 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.96 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.93 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.92 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.92 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.9 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.88 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.86 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.86 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.84 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.83 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.82 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.81 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.78 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.78 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.77 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.77 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.76 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.72 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.71 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.69 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.66 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.65 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.63 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.59 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.57 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.55 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.55 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.53 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.52 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.51 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.4 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.38 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.36 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.36 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.34 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.3 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.3 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.29 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 98.16 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.13 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.03 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.99 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.97 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.91 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.9 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.86 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.85 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.85 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.82 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.81 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.7 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.63 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.61 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.58 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.58 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.57 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.48 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.36 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.34 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.32 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.29 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.29 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.28 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.24 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.23 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 97.09 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.08 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.05 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.02 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.89 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.88 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.78 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.71 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.7 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.66 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.59 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.33 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.16 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.12 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.98 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 94.89 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 94.56 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 94.0 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 93.64 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 92.56 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 91.78 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 91.68 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 90.73 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 88.22 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 88.14 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 85.7 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 82.15 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 81.94 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 80.46 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-52 Score=354.44 Aligned_cols=282 Identities=22% Similarity=0.380 Sum_probs=256.5
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|++.++++| ||.|++||+.+++....+..|.. .|.+++|+| ++++|++|+.||.|++|
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~-------~V~~v~~~~-~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-------SVQDISFDH-SGKLLASCSADMTIKLW 177 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS-------CEEEEEECT-TSSEEEEEETTSCCCEE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCC-------cEEEEEEcC-CCCEEEEEeCCCeEEEE
Confidence 589999999999999995554 99999999999988776665543 369999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|+.+ .+....+.+|...|.+++|+| ++++|++|+.|++|++||+++++++..+.+|...|.++.++|++. +++++
T Consensus 178 d~~~---~~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~s~ 252 (410)
T 1vyh_C 178 DFQG---FECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASC 252 (410)
T ss_dssp ETTS---SCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred eCCC---CceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC-EEEEE
Confidence 9987 678888899999999999999 899999999999999999999999999999999999999999998 69999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC--------------------CCEEEEEecCCcEEEEeCCCCccc
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE--------------------HAWLATASRDKTIKVWDLSIKPSL 219 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~~ 219 (330)
+.|+.|++||+++ ......+..|...|.+++|+|+ +.+|++|+.|+.|++||++++...
T Consensus 253 s~D~~v~vwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 253 SNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 331 (410)
T ss_dssp ETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred cCCCeEEEEECCC-CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 9999999999998 5677788899999999999996 678999999999999999998777
Q ss_pred cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 220 EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 220 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
.....|...|.+++|+|++++++ +++ .|+.|++||+.+++. +..+.+|...|++++|+|++.+|++|+.||.|++|
T Consensus 332 ~~~~~h~~~v~~v~~~~~g~~l~-s~s--~D~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 332 MTLVGHDNWVRGVLFHSGGKFIL-SCA--DDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 (410)
T ss_dssp EEEECCSSCEEEEEECSSSSCEE-EEE--TTTEEEEECCTTSCC-CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred EEEECCCCcEEEEEEcCCCCEEE-EEe--CCCeEEEEECCCCce-EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 77778899999999999999855 455 599999999988765 78899999999999999999999999999999999
Q ss_pred ec
Q psy6213 300 KN 301 (330)
Q Consensus 300 ~~ 301 (330)
+.
T Consensus 408 ~~ 409 (410)
T 1vyh_C 408 EC 409 (410)
T ss_dssp C-
T ss_pred eC
Confidence 74
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=337.63 Aligned_cols=284 Identities=19% Similarity=0.305 Sum_probs=250.8
Q ss_pred CCcccceEEEEeeC----CCee-ecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCc
Q psy6213 2 AYLSPVHKHGLKAD----NGLA-QPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA 75 (330)
Q Consensus 2 ~H~~~v~~~~~s~~----~~~~-~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 75 (330)
+|.++|++++|+|+ +.++ +++ |+.|+||++..++......+. .+...|.+++|+| ++.++++++.|+.
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~-----gh~~~v~~~~~~~-~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE-----GHQLGVVSVDISH-TLPIAASSSLDAH 103 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECS-SSSEEEEEETTSE
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeec-----cCCCCEEEEEECC-CCCEEEEEeCCCc
Confidence 69999999999985 4564 445 999999999876544332222 2234479999999 9999999999999
Q ss_pred EEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcE
Q psy6213 76 VVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
|++||+.+ .+....+..|...+.+++|+| ++++|++++.||.|++||+++++....+..+...+.+++|+|+++ +
T Consensus 104 i~lWd~~~---~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~ 178 (321)
T 3ow8_A 104 IRLWDLEN---GKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK-Y 178 (321)
T ss_dssp EEEEETTT---TEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS-E
T ss_pred EEEEECCC---CCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC-E
Confidence 99999988 778888888999999999999 899999999999999999999999988988999999999999999 6
Q ss_pred EEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEc
Q psy6213 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWR 235 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 235 (330)
+++++.||.|++||+++ ++.+..+.+|..+|.+++|+|++++|++++.|+.|++||++..+.......|...|.+++|+
T Consensus 179 lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 257 (321)
T 3ow8_A 179 LASGAIDGIINIFDIAT-GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257 (321)
T ss_dssp EEEEETTSCEEEEETTT-TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEEEcCCCeEEEEECCC-CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEEC
Confidence 99999999999999998 67788899999999999999999999999999999999999887777777788999999999
Q ss_pred CCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
|++++ +++++ .|+.|++||+++++. +..+.+|...|.+++|+|++++|++++.||.|++|+.
T Consensus 258 p~~~~-l~s~s--~D~~v~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 258 PDDTH-FVSSS--SDKSVKVWDVGTRTC-VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp TTSSE-EEEEE--TTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCCE-EEEEe--CCCcEEEEeCCCCEE-EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99997 55555 699999999998866 8888999999999999999999999999999999974
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=336.47 Aligned_cols=283 Identities=23% Similarity=0.298 Sum_probs=247.2
Q ss_pred CCcccceEEEEeeCCCee-ecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLA-QPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~-~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|+++++ +++ ||.|++||..+++....+..+.. .|.+++|+| ++++|++|+.|+.+++|
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-------~v~~~~~s~-~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-------WVMTCAYAP-SGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSS-------CEEEEEECT-TSSEEEEEETTCEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCc-------cEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 599999999999999994 445 99999999999887766554433 368999999 99999999999999999
Q ss_pred ECCCCC-CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 80 NLGQIS-RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 80 ~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
++.+.. .......+.+|...|.++.|++ + ..+++++.|+.|++||+++++.+..+.+|...|.+++|+|+++ ++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD-D-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEE-T-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECC-C-CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEE
Confidence 997632 2245567789999999999997 4 4589999999999999999999999999999999999999998 6999
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec--cccceEEEEEcC
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN--TIASVSRIKWRP 236 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~ 236 (330)
|+.||.|++||+++ ......+.+|...|.+++|+|++++|++++.||.|++||++..+....... +...+.+++|+|
T Consensus 202 g~~d~~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 202 GACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp EETTSCEEEEETTT-CSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred EeCCCcEEEEECCC-CeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence 99999999999998 667788899999999999999999999999999999999998754433322 234799999999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+++++++ ++ .|+.|++||+.+... +..+.+|...|.+++|+|++.+|++|+.||.|++|+
T Consensus 281 ~g~~l~~-g~--~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 281 SGRLLLA-GY--DDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSSEEEE-EE--TTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEE-EC--CCCeEEEEEcccCcE-eeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9997554 44 599999999998876 788899999999999999999999999999999995
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-51 Score=339.50 Aligned_cols=294 Identities=20% Similarity=0.229 Sum_probs=238.3
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeecee----eccccccccceeeeeecccCCcEEEEEcCCCcE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLR----VGKNINLNFSCNDVAWSCIEENHIATGATNGAV 76 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 76 (330)
.|.+.|.+++|+|||++++++ |+++++||............+ ..........|.+++|+| + +.|++|+.||.|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d-~~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG-E-RGILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET-T-TEEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC-C-CeEEEEECCCEE
Confidence 467889999999999998777 989999974321111110100 011122234589999998 5 578899999999
Q ss_pred EEEECCCCCCCce-eEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcE
Q psy6213 77 VVWNLGQISRSKQ-ERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 77 ~iw~~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
++||+.+.+.... .....+|...|.+++|+| ++++|++|+.|++|++||+++++.+..+.+|...|.+++|+|++..+
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 9999987332222 223458999999999999 89999999999999999999999999999999999999999999878
Q ss_pred EEEEecCCcEEEEecCCCccceeeec--cCCCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCccccceeccccceEEE
Q psy6213 156 FASVSENGTIQQWDVRRPEKCFYQFT--AHSGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRI 232 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 232 (330)
+++++.|++|++||+++ .++...+. .+...+.+++|+|+ +++|++|+.||.|++||+++++.+.....|...|+++
T Consensus 185 l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRC-PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp EEEEETTSCEEEEETTS-SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred eeeeccccccccccccc-cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 99999999999999998 44454443 45567999999994 5789999999999999999998888888899999999
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCC-EEEEeecCCeEeeeeccc
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ-LFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iw~~~~ 303 (330)
+|+|++..++++++ .|+.|++||+++++ +..+.+|.+.|++++|+|+++ +|++++.||+|++|+...
T Consensus 264 ~fsp~g~~~lasgs--~D~~i~vwd~~~~~--~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 264 VFSPHSVPFLASLS--EDCSLAVLDSSLSE--LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EECSSSSCCEEEEE--TTSCEEEECTTCCE--EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred EEccCCCeEEEEEe--CCCeEEEEECCCCc--EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 99999976678777 79999999999875 456789999999999999876 577999999999997643
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-50 Score=332.44 Aligned_cols=284 Identities=18% Similarity=0.236 Sum_probs=246.4
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|+++++++| ||.|++||..+++....+..+.. .|.+++|+| ++..+++|+.|+.+++|
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~-------~v~~~~~sp-~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT-------WVMACAYAP-SGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-------CCCEEEECT-TSSEEEEESTTSEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCC-------CEEEEEECC-CCCEEEEeeCCCCEEEE
Confidence 599999999999999995544 99999999998877665554432 368999999 99999999999999999
Q ss_pred ECCCCC---CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCC--CCc
Q psy6213 80 NLGQIS---RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH--SPY 154 (330)
Q Consensus 80 ~~~~~~---~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 154 (330)
++.... .......+..|...|.+++|+| ++..|++++.|++|++||+++++.+..+.+|...|.+++|+|+ +.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~- 211 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN- 211 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC-
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC-
Confidence 986521 1234566778999999999998 8899999999999999999999999999999999999999885 44
Q ss_pred EEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec--cccceEEE
Q psy6213 155 AFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN--TIASVSRI 232 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~ 232 (330)
.|++|+.||.|++||+++ .+++..+..|...|.+++|+|++.+|++++.|+.|++||++..+....... ....+.++
T Consensus 212 ~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 290 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRS-GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV 290 (354)
T ss_dssp EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EEEEEeCCCeEEEEECCC-CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEE
Confidence 799999999999999998 667888899999999999999999999999999999999988754333222 23578999
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+|+|++++++ +++ .|+.|++||+.++.. +..+.+|...|.+++|+|++++|++++.||.|++|.
T Consensus 291 ~~s~~g~~l~-~g~--~d~~i~vwd~~~~~~-~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 291 DFSLSGRLLF-AGY--NDYTINVWDVLKGSR-VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSEEE-EEE--TTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEeCCCCEEE-EEE--CCCcEEEEECCCCce-EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999744 454 599999999988876 778899999999999999999999999999999994
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=324.51 Aligned_cols=282 Identities=18% Similarity=0.263 Sum_probs=242.9
Q ss_pred CCcccceEEEEeeCCCee-ecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLA-QPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~-~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|+++++ +++ ||.|++||+++++....+..+. .+|.+++|+| ++++|++|+.|+.|++|
T Consensus 11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~-------~~v~~~~~~~-~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTE-------TPVRAGKFIA-RKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCS-------SCEEEEEEEG-GGTEEEEEETTSEEEEE
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccC-------CcEEEEEEeC-CCCEEEEECCCCEEEEE
Confidence 489999999999999994 445 9999999999988776655443 2368999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC-ceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-ESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
|+.+ .+....+.+|...|.+++|+| ++.+|++|+.|++|++||++++ .....+.+|...|.+++|+|.+..++++
T Consensus 83 d~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 83 NYNT---GEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp ETTT---CCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE
T ss_pred ECCC---CcEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE
Confidence 9988 778888999999999999999 8899999999999999999887 4456788899999999999965447999
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC--CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcC
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP--EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRP 236 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 236 (330)
|+.|+.|++||+++..........|...+..+.|+| ++.+|++++.|+.|++||+++++.......|...|.+++|+|
T Consensus 159 gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 159 GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence 999999999999875444444456778899999987 778999999999999999999877777888999999999999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCC--EEEEeecCCeEeeee
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ--LFIASSRVSIIPRAK 300 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~iw~ 300 (330)
+++. +++++ .||.|++||+++.+. ...+..|...+.+++|+|++. ++++|+.|| +.+|.
T Consensus 239 ~~~~-l~s~s--~Dg~i~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~ 299 (304)
T 2ynn_A 239 TLPI-IISGS--EDGTLKIWNSSTYKV-EKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLS 299 (304)
T ss_dssp SSSE-EEEEE--TTSCEEEEETTTCCE-EEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEE
T ss_pred CCCE-EEEEc--CCCeEEEEECCCCce-eeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEE
Confidence 9996 56666 699999999998876 788889999999999999775 577777666 55554
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=341.44 Aligned_cols=289 Identities=18% Similarity=0.269 Sum_probs=246.0
Q ss_pred CCcccceEEEEeeCCCeeec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|+++++++ + |++|+|||+.+++....+..+... |.+++|+| ++++|++|+.|+.+++|
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~-------v~~~~~s~-~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW-------VMECAFAP-NGQSVACGGLDSACSIF 135 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT-------CCCCEECT-TSSEEEECCSSSCCEEE
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCC-------EEEEEECC-CCCEEEEeeCCCcEEEE
Confidence 59999999999999999554 4 999999999998877766655433 58999999 99999999999999999
Q ss_pred ECCCCC----CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee-----ecCCCCeEEEEEcC
Q psy6213 80 NLGQIS----RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF-----HSNTESVRDVEFNP 150 (330)
Q Consensus 80 ~~~~~~----~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~ 150 (330)
++.... .......+.+|.+.+.++.|.|.++..|++|+.|++|++||+++++.+..+ .+|...|.+++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 987521 123445678999999999999966778999999999999999999888776 56888999999988
Q ss_pred CCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecc-----
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT----- 225 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----- 225 (330)
.+..++++|+.|+.|++||++.....+..+.+|.+.|.+++|+|++++|++++.||+|++||+++++.......+
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND 295 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccc
Confidence 544489999999999999998656778889999999999999999999999999999999999988554333221
Q ss_pred --ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEe----ecCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 226 --IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASF----TEHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 226 --~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
...+.+++|+|+|++++++ + .||.|++||+..++. ...+ .+|.+.|.+++|+|+|++|++|+.||.|++|
T Consensus 296 ~~~~~v~~~~~s~~g~~l~~g-~--~dg~i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 296 NELPIVTSVAFSISGRLLFAG-Y--SNGDCYVWDTLLAEM-VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp CSSCSCSEEEECSSSSEEEEE-C--TTSCEEEEETTTCCE-EEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccCceEEEEECCCCCEEEEE-E--CCCCEEEEECCCCce-EEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 2348999999999975554 4 599999999988765 4444 6799999999999999999999999999999
Q ss_pred ecc
Q psy6213 300 KNI 302 (330)
Q Consensus 300 ~~~ 302 (330)
+..
T Consensus 372 ~~~ 374 (380)
T 3iz6_a 372 AFS 374 (380)
T ss_dssp ECC
T ss_pred ecC
Confidence 754
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=330.27 Aligned_cols=291 Identities=20% Similarity=0.294 Sum_probs=233.8
Q ss_pred CCcccceEEEEeeCCCeeecC--------CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--------RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN 73 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 73 (330)
.|.+.|++++|+|||++|+++ |+.+++|+..++.....+... ...+...|.+++|+| ++. +++++.|
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~---~~~~~~~V~~~~~s~-d~~-~l~~s~d 114 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA---GVQTEAGVTDVAWVS-EKG-ILVASDS 114 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE---EEECSSCEEEEEEET-TTE-EEEEETT
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc---cCCCCCCEEEEEEcC-CCC-EEEEECC
Confidence 599999999999999996555 357888887776543322211 122334579999999 665 5567789
Q ss_pred CcEEEEECCCCCCCc-eeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCC
Q psy6213 74 GAVVVWNLGQISRSK-QERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHS 152 (330)
Q Consensus 74 g~i~iw~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 152 (330)
|.|++||+.+.+... ......+|...|.+++|+| ++++|++|+.|+.|++||+++++.+..+..|...|.+++|+|++
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK 193 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTC
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCC
Confidence 999999998732211 2233457999999999999 89999999999999999999999999999999999999999998
Q ss_pred CcEEEEEecCCcEEEEecCCCcccee--eeccCCCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCccccceeccccce
Q psy6213 153 PYAFASVSENGTIQQWDVRRPEKCFY--QFTAHSGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPSLEYSINTIASV 229 (330)
Q Consensus 153 ~~~~~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 229 (330)
+.++++++.||.|++||++++. +.. ....+...+.+++|+|+ +.+|++|+.|+.|++||+++++.......+...|
T Consensus 194 ~~~~~s~~~dg~v~~wd~~~~~-~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v 272 (357)
T 4g56_B 194 DTIFLSCGEDGRILLWDTRKPK-PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNI 272 (357)
T ss_dssp SSCEEEEETTSCEEECCTTSSS-CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCE
T ss_pred CceeeeeccCCceEEEECCCCc-eeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeE
Confidence 7779999999999999999843 333 33457788999999997 5689999999999999999987777777888999
Q ss_pred EEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec-CCCEEEEeecCCeEeeeeccc
Q psy6213 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG-DPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iw~~~~ 303 (330)
++++|+|++..++++++ .|+.|++||+++++. + ...+|.+.|++++|+| ++.+|++++.||.|++|+...
T Consensus 273 ~~l~~sp~~~~~lasgs--~D~~i~iwd~~~~~~-~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 273 TGLAYSYHSSPFLASIS--EDCTVAVLDADFSEV-F-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEEECSSSSCCEEEEE--TTSCEEEECTTSCEE-E-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EEEEEcCCCCCEEEEEe--CCCEEEEEECCCCcE-e-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999876688777 799999999998764 3 4458999999999999 899999999999999998643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=324.07 Aligned_cols=291 Identities=17% Similarity=0.278 Sum_probs=236.9
Q ss_pred CCcc-cceEEEEeeCCCeeec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLS-PVHKHGLKADNGLAQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~-~v~~~~~s~~~~~~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
+|.+ .|++++|+|+|+++++ + |+.|+|||++++......... ..+...|.+++|+| ++++|++|+.|+.+++
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~----~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS----EGHQRTVRKVAWSP-CGNYLASASFDATTCI 87 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC----SSCSSCEEEEEECT-TSSEEEEEETTSCEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec----cccCCcEEEEEECC-CCCEEEEEECCCcEEE
Confidence 5777 9999999999999554 4 999999999887543322111 12344579999999 9999999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc---eeeeeecCCCCeEEEEEcCCCCcE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE---STKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
|+.... .......+.+|...|.+++|+| ++++|++|+.|+.|++||++++. .+..+..|...|.+++|+|+++ +
T Consensus 88 w~~~~~-~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~ 164 (345)
T 3fm0_A 88 WKKNQD-DFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-L 164 (345)
T ss_dssp EEECCC--EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-C
T ss_pred EEccCC-CeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-E
Confidence 998762 2356678889999999999999 89999999999999999998764 3566778999999999999998 5
Q ss_pred EEEEecCCcEEEEecCCCc-cceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc---------------
Q psy6213 156 FASVSENGTIQQWDVRRPE-KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL--------------- 219 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------------- 219 (330)
|++++.|+.|++||.+... .+...+.+|...|.+++|+|++++|++++.|+.|++||.......
T Consensus 165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 9999999999999998743 245678899999999999999999999999999999997433111
Q ss_pred cce-eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc---c-----ceEeecCCCCeEEEEEecCC-CEEEE
Q psy6213 220 EYS-INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI---P-----LASFTEHKDVVSGLAWRGDP-QLFIA 289 (330)
Q Consensus 220 ~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~---~-----~~~~~~~~~~v~~~~~~~~~-~~l~s 289 (330)
... ..|...|.+++|+|++..+++++ .|+.|++|+...... + .....+|...|++++|+|++ .+|++
T Consensus 245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS 321 (345)
T 3fm0_A 245 CTLSGFHSRTIYDIAWCQLTGALATAC---GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321 (345)
T ss_dssp EEECSSCSSCEEEEEECTTTCCEEEEE---TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred EEecCCCCCcEEEEEEecCCCEEEEEe---CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence 011 12667899999999999755554 599999999875432 1 12235799999999999987 59999
Q ss_pred eecCCeEeeeeccc
Q psy6213 290 SSRVSIIPRAKNIK 303 (330)
Q Consensus 290 ~~~dg~i~iw~~~~ 303 (330)
|+.||.|++|+...
T Consensus 322 ~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 322 CSDDGEVAFWKYQR 335 (345)
T ss_dssp EETTSCEEEEEECC
T ss_pred cCCCCcEEEEEecC
Confidence 99999999998653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=327.92 Aligned_cols=290 Identities=19% Similarity=0.289 Sum_probs=243.9
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccc-----------cccccceeeeeecccCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKN-----------INLNFSCNDVAWSCIEENHIAT 69 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~l~~ 69 (330)
.|.+.|++++|+|||+++++| ++.+++|++.+++....+..+.... ......|.+++|+| ++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEEEE
Confidence 489999999999999998888 9999999999988776654332110 01122378999999 9999999
Q ss_pred EcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEc
Q psy6213 70 GATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFN 149 (330)
Q Consensus 70 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 149 (330)
|+.|+.|++||+.+ .+....+.+|...|.+++|+| ++++|++++.|++|++||+++++....+. +...+.+++|+
T Consensus 141 ~~~d~~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~ 215 (393)
T 1erj_A 141 GAEDRLIRIWDIEN---RKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS 215 (393)
T ss_dssp EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred EcCCCeEEEEECCC---CcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE
Confidence 99999999999988 778888999999999999998 88999999999999999999998887776 56789999999
Q ss_pred C-CCCcEEEEEecCCcEEEEecCCCccceeee-------ccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc---
Q psy6213 150 P-HSPYAFASVSENGTIQQWDVRRPEKCFYQF-------TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS--- 218 (330)
Q Consensus 150 ~-~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--- 218 (330)
| ++. ++++++.||.|++||+++ +..+..+ .+|...|.+++|+|++++|++++.|+.|++||++....
T Consensus 216 ~~~~~-~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 216 PGDGK-YIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp STTCC-EEEEEETTSCEEEEETTT-CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred CCCCC-EEEEEcCCCcEEEEECCC-CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence 9 666 799999999999999987 4444444 57889999999999999999999999999999976422
Q ss_pred ---------ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec------C
Q psy6213 219 ---------LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG------D 283 (330)
Q Consensus 219 ---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~------~ 283 (330)
......|...|.+++|+|++++ +++++ .|+.|++||+++++. +..+.+|...|.+++|++ +
T Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs--~D~~v~iwd~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~p~ 369 (393)
T 1erj_A 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGS--KDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPE 369 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCE-EEEEE--TTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTT
T ss_pred ccCCCCCcceEEEecccCcEEEEEECCCCCE-EEEEe--CCCeEEEEECCCCeE-EEEECCCCCCEEEEEecCCcCcCCC
Confidence 2334567788999999999997 55555 699999999998876 788999999999999986 6
Q ss_pred CCEEEEeecCCeEeeeeccc
Q psy6213 284 PQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 284 ~~~l~s~~~dg~i~iw~~~~ 303 (330)
+++|++|+.||.|++|+..+
T Consensus 370 ~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 370 YNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CEEEEEEETTSEEEEEEEEE
T ss_pred CCEEEEECCCCcEEECcccc
Confidence 88999999999999997643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=318.04 Aligned_cols=289 Identities=17% Similarity=0.272 Sum_probs=234.1
Q ss_pred CCcccceEEEE-----ee-CCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC
Q psy6213 2 AYLSPVHKHGL-----KA-DNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN 73 (330)
Q Consensus 2 ~H~~~v~~~~~-----s~-~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 73 (330)
.|.+.|++++| ++ +++++++| |++|++||+..++..............+...|.+++|+| ++.++++|+.|
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D 97 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWD 97 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEETT
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEEEcCC
Confidence 59999999999 76 88885554 999999999764321111111111223345579999999 99999999999
Q ss_pred CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee---cCCCCeEEEEEcC
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH---SNTESVRDVEFNP 150 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~ 150 (330)
+.|++||+.+ .+....+.+|...|.+++|+| ++++|++++.|+.|++||+... ...... .|...|.+++|+|
T Consensus 98 ~~v~lwd~~~---~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 98 KTLRLWDLRT---GTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp SEEEEEETTS---SCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECC
T ss_pred CcEEEEECCC---CcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecc
Confidence 9999999988 678888999999999999999 8999999999999999999743 333332 5788999999999
Q ss_pred CCC---------cEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc
Q psy6213 151 HSP---------YAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY 221 (330)
Q Consensus 151 ~~~---------~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 221 (330)
++. .++++++.||.|++||.+ ......+.+|...|.+++|+|++++|++++.||.|++||+........
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred ccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 872 369999999999999954 456677889999999999999999999999999999999965544444
Q ss_pred eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc-ceEee-----------cCCCCeEEEEEecCCCEEEE
Q psy6213 222 SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP-LASFT-----------EHKDVVSGLAWRGDPQLFIA 289 (330)
Q Consensus 222 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~-~~~~~-----------~~~~~v~~~~~~~~~~~l~s 289 (330)
...+...+.+++|+|++++ ++++. |+.|++||+.+.... ...+. +|...|.+++|+|+|++|++
T Consensus 251 ~~~~~~~v~~v~~sp~~~~-la~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s 326 (343)
T 2xzm_R 251 EFDAGSTINQIAFNPKLQW-VAVGT---DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA 326 (343)
T ss_dssp EEECSSCEEEEEECSSSCE-EEEEE---SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE
T ss_pred eecCCCcEEEEEECCCCCE-EEEEC---CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE
Confidence 4445677999999999985 56665 889999999876531 11332 67888999999999999999
Q ss_pred eecCCeEeeeecc
Q psy6213 290 SSRVSIIPRAKNI 302 (330)
Q Consensus 290 ~~~dg~i~iw~~~ 302 (330)
|+.||.|++|+..
T Consensus 327 g~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 327 GFTDGVIRTFSFE 339 (343)
T ss_dssp EETTSEEEEEEEE
T ss_pred ecCCceEEEEEEE
Confidence 9999999999753
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-48 Score=315.31 Aligned_cols=283 Identities=21% Similarity=0.351 Sum_probs=242.3
Q ss_pred CCcccceEEEEeeCCCeeec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|+++++++ + ||.|++|+..+++....+..+. ..|.+++|+| ++++|++++.||.|++|
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~-------~~v~~~~~~~-~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-------LGISDVAWSS-DSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-------SCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC-------CceEEEEEcC-CCCEEEEECCCCEEEEE
Confidence 58999999999999999544 4 9999999999888776655443 3469999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|+.+ .+....+..|...|.+++|+| ++++|++|+.|+.|++||+++++.+..+..|..+|.+++|+|+++ +++++
T Consensus 93 d~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 167 (312)
T 4ery_A 93 DVSS---GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSS 167 (312)
T ss_dssp ETTT---CCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred ECCC---CcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC-EEEEE
Confidence 9988 678888899999999999998 899999999999999999999999999999999999999999998 69999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccce--EEEEEc-C
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASV--SRIKWR-P 236 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v--~~~~~~-~ 236 (330)
+.||.|++||+++..........+...+..++|+|++++|++++.||.|++||+++++.......+.... ....++ +
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 9999999999998443333344567789999999999999999999999999999886655554443322 223344 5
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEee--cCCeEeeeec
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS--RVSIIPRAKN 301 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~iw~~ 301 (330)
++.+ +++++ .||.|++||+++++. +..+.+|...|.+++|+|++++|++++ .|+.|++|+.
T Consensus 248 ~~~~-l~sg~--~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 248 GGKW-IVSGS--EDNLVYIWNLQTKEI-VQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp SSCE-EEECC--TTSCEEEEETTTCCE-EEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred CCcE-EEEEC--CCCEEEEEECCCchh-hhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 6665 66666 699999999998876 888999999999999999999999987 6999999974
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=313.02 Aligned_cols=286 Identities=17% Similarity=0.302 Sum_probs=236.8
Q ss_pred CCcccceEEEEeeCC-Ce-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADN-GL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~-~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
.|.++|++++|+|++ ++ ++++ |+.|++|++........... .....+...|.+++|+| ++++|++|+.|+.|++
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--RSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRL 91 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--EEEECCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--eEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEE
Confidence 599999999999976 66 5555 99999999875332111100 11122344579999999 9999999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCC-----
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSP----- 153 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~----- 153 (330)
||+.+ ++....+.+|...|.+++|+| ++.+|++|+.|++|++||++ ++.+..+.+|...+.+++|+|...
T Consensus 92 wd~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 92 WDVAT---GETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EETTT---TEEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EECCC---CCeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 99988 788888999999999999998 89999999999999999996 567778888999999999998532
Q ss_pred cEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEE
Q psy6213 154 YAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIK 233 (330)
Q Consensus 154 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~ 233 (330)
..+++++.|+.|++||+++ .+....+.+|...|.+++|+|++++|++++.||.|++||+.+.+.... ......+.+++
T Consensus 167 ~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~v~~~~ 244 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT-LSAQDEVFSLA 244 (319)
T ss_dssp CEEEEEETTSCEEEEETTT-TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE-EECCSCEEEEE
T ss_pred cEEEEEeCCCEEEEEECCc-chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-ecCCCcEEEEE
Confidence 2699999999999999997 566778889999999999999999999999999999999998855443 34457899999
Q ss_pred EcCCCCeEEEEeecccCCeEEEEEccCCCccceEee--------cCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 234 WRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT--------EHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
|+|++.+ ++++. ++.+++|++..... +..+. .|...+.+++|+|||++|++|+.||.|++|+..
T Consensus 245 ~sp~~~~-la~~~---~~~i~v~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 245 FSPNRYW-LAAAT---ATGIKVFSLDPQYL-VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp ECSSSSE-EEEEE---TTEEEEEEETTEEE-EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EcCCCCE-EEEEc---CCCcEEEEeCcCee-eeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 9999997 55555 67799999986543 33332 345679999999999999999999999999753
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=311.29 Aligned_cols=289 Identities=17% Similarity=0.298 Sum_probs=225.0
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|+ + ++++ |+.|++|++..+.......+. ...+...|.+++|+| ++++|++|+.|+.|++|
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~---~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD---ETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC---TTCCCSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe---cCCccCCEEEEEECC-CCCEEEEEeCCCcEEEE
Confidence 59999999999998 6 5555 999999999875422211110 111344579999999 99999999999999999
Q ss_pred ECCCCC----CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC----ceeeeeecCCCCeEEEEEcCC
Q psy6213 80 NLGQIS----RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ----ESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 80 ~~~~~~----~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~ 151 (330)
++.... .......+.+|...|.+++|+| ++++|++|+.|++|++||++.. +.+..+.+|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 164 (330)
T 2hes_X 86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164 (330)
T ss_dssp EC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred EcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence 985421 2355677889999999999999 8999999999999999999532 456778889999999999999
Q ss_pred CCcEEEEEecCCcEEEEecCCCc-cceeeeccCCCCeEEEEEcCC--CCEEEEEecCCcEEEEeCCCCcc--------cc
Q psy6213 152 SPYAFASVSENGTIQQWDVRRPE-KCFYQFTAHSGPIFACDWHPE--HAWLATASRDKTIKVWDLSIKPS--------LE 220 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--------~~ 220 (330)
+. +|++++.|++|++||.++.. .++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||++.... ..
T Consensus 165 ~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 243 (330)
T 2hes_X 165 EA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEA 243 (330)
T ss_dssp SS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEE
T ss_pred CC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEee
Confidence 98 69999999999999987632 567788999999999999998 67899999999999999876421 11
Q ss_pred cee-ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc-cc-eEeecCCC-CeEEEEEec--CCCEEEEeecCC
Q psy6213 221 YSI-NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI-PL-ASFTEHKD-VVSGLAWRG--DPQLFIASSRVS 294 (330)
Q Consensus 221 ~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~-~~-~~~~~~~~-~v~~~~~~~--~~~~l~s~~~dg 294 (330)
... .|...|.+++|++++ . +++++ .||.|++||..++.. .. ....+|.. .|.+++|+| ++++|++++.||
T Consensus 244 ~~~~~h~~~v~~v~~s~~~-~-l~s~~--~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 244 ILPDVHKRQVYNVAWGFNG-L-IASVG--ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp ECCSCCSSCEEEEEECTTS-C-EEEEE--TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred ecccccccceEEEEEcCCC-E-EEEEe--CCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 122 277899999999776 3 55555 699999999987631 12 23357876 899999999 789999999999
Q ss_pred eEeeeecc
Q psy6213 295 IIPRAKNI 302 (330)
Q Consensus 295 ~i~iw~~~ 302 (330)
.|++|+..
T Consensus 320 ~v~~W~~~ 327 (330)
T 2hes_X 320 IVNFWSLE 327 (330)
T ss_dssp EEEEEEC-
T ss_pred cEEEEEec
Confidence 99999754
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=333.01 Aligned_cols=292 Identities=16% Similarity=0.245 Sum_probs=233.8
Q ss_pred CCcccceEEEEeeCCCeeec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|++++|+|||+++++ + |+.|++||+.+++....+.........+...|.+++|+| ++++|++++.|+.|++|
T Consensus 188 ~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 188 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIW 266 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 58999999999999999554 4 999999999988876655311111113455689999999 99999999999999999
Q ss_pred ECCCCCCC----------------------------------------ceeEEecccccceeEEEEEecCCCEEEEEecC
Q psy6213 80 NLGQISRS----------------------------------------KQERVFNDHKRTVNKVSFHYVESNWLISGSQD 119 (330)
Q Consensus 80 ~~~~~~~~----------------------------------------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 119 (330)
|+.+.... .....+.+|...|.+++|+| ++++|++++.|
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D 345 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAE 345 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCC
Confidence 99762110 12234567999999999999 99999999999
Q ss_pred CcEEEEEeecCceeeee-e-------------------------------------------------------------
Q psy6213 120 GTMRLFDIRCQESTKIF-H------------------------------------------------------------- 137 (330)
Q Consensus 120 ~~i~i~d~~~~~~~~~~-~------------------------------------------------------------- 137 (330)
++|++||+.+++....+ .
T Consensus 346 ~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 425 (611)
T 1nr0_A 346 GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI 425 (611)
T ss_dssp SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSC
T ss_pred CcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcE
Confidence 99999998765432211 0
Q ss_pred --------------------cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCC
Q psy6213 138 --------------------SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEH 196 (330)
Q Consensus 138 --------------------~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~ 196 (330)
.+...+.+++|+|+++ ++++|+.|+.|++||+..... .... ..|...|++++|+|+|
T Consensus 426 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~-~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg 503 (611)
T 1nr0_A 426 AVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNG 503 (611)
T ss_dssp EEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTS
T ss_pred EEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC-EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCC
Confidence 0223467899999998 699999999999999986322 1233 6799999999999999
Q ss_pred CEEEEEecCCcEEEEeCCC-Cccccc--eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccc-eEeecC-
Q psy6213 197 AWLATASRDKTIKVWDLSI-KPSLEY--SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPL-ASFTEH- 271 (330)
Q Consensus 197 ~~l~~~~~dg~i~i~d~~~-~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~-~~~~~~- 271 (330)
++|++++.|+.|++||+.+ ++.... ...|...|.+++|+|++++ +++++ .|+.|++||+.++.... ..+.+|
T Consensus 504 ~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~-lasgs--~D~~v~lW~~~~~~~~~~~~~~~h~ 580 (611)
T 1nr0_A 504 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR-LATGS--LDNSVIVWNMNKPSDHPIIIKGAHA 580 (611)
T ss_dssp SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTCTTSCCEEETTSST
T ss_pred CEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCE-EEEEE--CCCcEEEEECCCcccccchhhccCc
Confidence 9999999999999999987 433222 2238899999999999997 55666 69999999998876434 667789
Q ss_pred CCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 272 KDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 272 ~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
...|.+++|+|+++ |++++.|++|++|+.
T Consensus 581 ~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 581 MSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp TSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred ccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 89999999999998 999999999999975
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=333.40 Aligned_cols=284 Identities=17% Similarity=0.207 Sum_probs=242.5
Q ss_pred CcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 3 YLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
+.+.+.+++|+|||++++++ ++.+++|++.+++....+..|.. .|++++|+| ++++||+|+.||.|+|||+
T Consensus 17 ~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~-------~v~~~~~sp-dg~~lasg~~d~~v~lWd~ 88 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH-------QTTVAKTSP-SGYYCASGDVHGNVRIWDT 88 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSS-------CEEEEEECT-TSSEEEEEETTSEEEEEES
T ss_pred ccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCC-------ceEEEEECC-CCcEEEEEeCCCCEEEeEC
Confidence 56788999999999997777 88999999998777666655543 369999999 9999999999999999998
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC----CcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD----GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
.+. .......+..|.+.|.+++|+| ++++|++++.+ +.|++|| .++....+.+|...|.+++|+|++++.++
T Consensus 89 ~~~-~~~~~~~~~~~~~~v~~v~fs~-dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~ 164 (611)
T 1nr0_A 89 TQT-THILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRII 164 (611)
T ss_dssp SST-TCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred CCC-cceeeEeecccCCceEEEEECC-CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEE
Confidence 652 1334556788999999999999 88899988865 4688887 46677788999999999999999986799
Q ss_pred EEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee-------ccccceE
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI-------NTIASVS 230 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~ 230 (330)
+++.|++|++||.++ .+....+.+|...|.+++|+|++++|++++.|+.|++||+.+++...... .|...|.
T Consensus 165 s~s~D~~v~lwd~~~-~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~ 243 (611)
T 1nr0_A 165 SGSDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243 (611)
T ss_dssp EEETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred EEeCCCeEEEEECCC-CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE
Confidence 999999999999887 66778899999999999999999999999999999999998875543332 6888999
Q ss_pred EEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc------------------------------------------ceEe
Q psy6213 231 RIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP------------------------------------------LASF 268 (330)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~------------------------------------------~~~~ 268 (330)
+++|+|++++ +++++ .|+.|++||+++++.. ...+
T Consensus 244 ~v~~spdg~~-l~s~s--~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~ 320 (611)
T 1nr0_A 244 GLTWSPDGTK-IASAS--ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR 320 (611)
T ss_dssp EEEECTTSSE-EEEEE--TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEE
T ss_pred EEEECCCCCE-EEEEe--CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEE
Confidence 9999999997 55555 6999999999875431 2234
Q ss_pred ecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 269 TEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 269 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+|...|++++|+|++++|++++.|+.|++|+..
T Consensus 321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence 5799999999999999999999999999999864
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=305.39 Aligned_cols=250 Identities=18% Similarity=0.252 Sum_probs=213.5
Q ss_pred CcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 3 YLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
|...|.+++|+|++.+++++ ||.|+|||+++++......... ..+...|++++|+| ++++|++|+.||.|++||+
T Consensus 81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~---~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 81 TEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCK---YEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp ESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEE---ECCSSCEEEEEECT-TSSEEEEEETTSCEEEEET
T ss_pred cCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccc---cCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEEC
Confidence 56789999999998777777 9999999999987654433221 12344579999999 9999999999999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee--cCCCCeEEEEEcCCCCcEEEEE
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH--SNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
.+ .+.+..+.+|...|.+++|+|.+..+|++++.|++|++||+++++....+. .+...+.+++|+|++..++++|
T Consensus 157 ~~---~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 157 AQ---QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp TT---TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred CC---CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence 88 788899999999999999999556789999999999999999998887764 3456799999999877789999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCC-CEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQR 238 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 238 (330)
+.||.|++||+++ .+++..+.+|...|++++|+|++ ++|++++.|++|++||+++++ +.....|...|.+++|+|++
T Consensus 234 ~~dg~v~~wd~~~-~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~ 311 (344)
T 4gqb_B 234 DENGTVSLVDTKS-TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLN 311 (344)
T ss_dssp ETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSS
T ss_pred ccCCcEEEEECCC-CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCC
Confidence 9999999999998 67788899999999999999998 579999999999999999884 44567789999999999999
Q ss_pred CeEEEEeecccCCeEEEEEccCCCc
Q psy6213 239 KFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
+.++++++ .|++|++|++.+...
T Consensus 312 ~~llas~s--~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 312 HSLLTTVG--WDHQVVHHVVPTEPL 334 (344)
T ss_dssp TTEEEEEE--TTSCEEEEECCC---
T ss_pred CeEEEEEc--CCCeEEEEECCCCCC
Confidence 98888888 799999999987643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=301.84 Aligned_cols=283 Identities=13% Similarity=0.205 Sum_probs=246.4
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|++++++++ ||.|++||+.+++....+..+.. .|.+++|+| ++++|++++.||.|++|
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-------~v~~~~~~~-~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG-------TIWSIDVDC-FTKYCVTGSADYSIKLW 101 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSS-------CEEEEEECT-TSSEEEEEETTTEEEEE
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC-------cEEEEEEcC-CCCEEEEEeCCCeEEEE
Confidence 599999999999999995554 99999999999887776654433 369999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC-----CcEEEEEeecCce-----------eeeeecCCC--
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD-----GTMRLFDIRCQES-----------TKIFHSNTE-- 141 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~-----------~~~~~~~~~-- 141 (330)
|+.+ .+....+. +...+.+++|+| ++.++++++.+ +.|++||+..... ...+..+..
T Consensus 102 d~~~---~~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 102 DVSN---GQCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLD 176 (369)
T ss_dssp ETTT---CCEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCC
T ss_pred ECCC---CcEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcc
Confidence 9988 66666666 889999999998 89999999998 9999999987643 334444555
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc
Q psy6213 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY 221 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 221 (330)
.+.+++|+|+++ .+++++.||.|++||+++.......+..|...|.+++|+|++++|++++.||.|++||+++.+...
T Consensus 177 ~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~- 254 (369)
T 3zwl_B 177 AATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK- 254 (369)
T ss_dssp CEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred ceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee-
Confidence 899999999998 689999999999999998667788888999999999999999999999999999999999885443
Q ss_pred eeccccceEEEEEcCCCCeEEEEeecccCC--------------eEEEEEccCCCccceEeecCCCCeEEEEEecCCCEE
Q psy6213 222 SINTIASVSRIKWRPQRKFHLASCSLVVDS--------------SVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLF 287 (330)
Q Consensus 222 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~--------------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 287 (330)
...+...+..++|+|+++++++++. ++ .+++||+.+++. +..+.+|...|.+++|+|++++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l 330 (369)
T 3zwl_B 255 KYETDCPLNTAVITPLKEFIILGGG---QEAKDVTTTSANEGKFEARFYHKIFEEE-IGRVQGHFGPLNTVAISPQGTSY 330 (369)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEEC---CC-------------CEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEE
T ss_pred eecCCCCceeEEecCCCceEEEeec---CCCceEEEEecCCCcceeEEEecCCCcc-hhheecccCcEEEEEECCCCCEE
Confidence 3447789999999999998666665 66 899999998876 78889999999999999999999
Q ss_pred EEeecCCeEeeeeccc
Q psy6213 288 IASSRVSIIPRAKNIK 303 (330)
Q Consensus 288 ~s~~~dg~i~iw~~~~ 303 (330)
++++.||.|++|+...
T Consensus 331 ~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 331 ASGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEEETTSEEEEEEECH
T ss_pred EEEcCCCeEEEEECcc
Confidence 9999999999998654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-44 Score=296.75 Aligned_cols=286 Identities=13% Similarity=0.184 Sum_probs=243.8
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.|.++|++++|+|++++++++ ||.|++|++.+++........ ........+.+++|+| ++++|++++.||.|++||
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQL--DCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEE--ECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEE
T ss_pred cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecc--cccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEE
Confidence 589999999999999997777 999999999886543322211 1112345579999999 999999999999999999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
+.+.. ......+..|...+.+++|+| +++++++++.||.|++||+++++.+..+..|...+.+++|+|+++ .+++++
T Consensus 126 ~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~ 202 (337)
T 1gxr_A 126 LAAPT-PRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWTGG 202 (337)
T ss_dssp CCCC---EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred CCCCC-cceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC-EEEEEe
Confidence 98721 235667788999999999998 899999999999999999999999999999999999999999998 699999
Q ss_pred cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCe
Q psy6213 161 ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKF 240 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 240 (330)
.||.|++||+++ .+....+ .+...+.+++|+|+++++++++.|+.|++||+++.+ ......+...+.+++|+|++++
T Consensus 203 ~dg~i~~~d~~~-~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 203 LDNTVRSWDLRE-GRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp TTSEEEEEETTT-TEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEEECCCSSCEEEEEECTTSSE
T ss_pred cCCcEEEEECCC-CceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eEEEcCCccceeEEEECCCCCE
Confidence 999999999997 4545554 477889999999999999999999999999999874 4455667889999999999997
Q ss_pred EEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 241 HLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 241 l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
++ +++ .||.|++||+.+++. + ....|...|.+++|+|++++|++++.||.|++|+.
T Consensus 280 l~-~~~--~dg~i~~~~~~~~~~-~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 280 FV-STG--KDNLLNAWRTPYGAS-I-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EE-EEE--TTSEEEEEETTTCCE-E-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EE-Eec--CCCcEEEEECCCCeE-E-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 54 555 599999999998875 3 34567889999999999999999999999999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=294.13 Aligned_cols=240 Identities=20% Similarity=0.349 Sum_probs=216.4
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
.|.+++|+| ++++|++|+.||.|++||+.+ ......+..|..+|.+++|+| ++++|++|+.|+.|++||+++++.
T Consensus 15 ~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 15 RVKGIDFHP-TEPWVLTTLYSGRVELWNYET---QVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp CEEEEEECS-SSSEEEEEETTSEEEEEETTT---TEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCE
T ss_pred ceEEEEECC-CCCEEEEEcCCCcEEEEECCC---CceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCCCcE
Confidence 479999999 999999999999999999988 778888899999999999998 899999999999999999999999
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEecCCcEEEE
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRDKTIKVW 211 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~ 211 (330)
+..+.+|...|.+++|+|+++ ++++|+.|++|++||++++......+.+|...|.+++|+| ++.+|++++.|+.|++|
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iw 168 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred EEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 999999999999999999998 6999999999999999985566778889999999999999 67899999999999999
Q ss_pred eCCCCccccce-eccccceEEEEEcC--CCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEE
Q psy6213 212 DLSIKPSLEYS-INTIASVSRIKWRP--QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFI 288 (330)
Q Consensus 212 d~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 288 (330)
|++........ ..+...+..+.|+| ++++ +++++ .|+.|++||+++++. +..+.+|...|.+++|+|++++|+
T Consensus 169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~s--~D~~i~iWd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-MITAS--DDLTIKIWDYQTKSC-VATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp ETTCSSCSEEEECCCTTCEEEEEECCSTTCCE-EEEEE--TTSEEEEEETTTTEE-EEEEECCSSCEEEEEECSSSSEEE
T ss_pred ECCCCCccceeccCCcCcEEEEEEEEcCCCCE-EEEEc--CCCeEEEEeCCCCcc-ceeeCCCCCCEEEEEECCCCCEEE
Confidence 99877554333 34557899999987 5665 55666 699999999998865 888999999999999999999999
Q ss_pred EeecCCeEeeeecc
Q psy6213 289 ASSRVSIIPRAKNI 302 (330)
Q Consensus 289 s~~~dg~i~iw~~~ 302 (330)
+++.||.|++|+..
T Consensus 245 s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 245 SGSEDGTLKIWNSS 258 (304)
T ss_dssp EEETTSCEEEEETT
T ss_pred EEcCCCeEEEEECC
Confidence 99999999999854
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=320.76 Aligned_cols=275 Identities=24% Similarity=0.355 Sum_probs=240.1
Q ss_pred CCcccceEEEEeeCCCeee-cC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQ-PS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~-~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|.+++|+|++++++ ++ |+.|++||...... ..+.. +...+.+++|+| ++++|++++.||.+++|
T Consensus 301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~-------~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTG-------HSSSVWGVAFSP-DGQTIASASDDKTVKLW 371 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE-EEECC-------CSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEEeC-------CCCCEEEEEECC-CCCEEEEEeCCCEEEEE
Confidence 5889999999999999954 44 99999999876543 22222 233468999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
+.. .+....+..|...|.+++|+| ++++|++++.|+.|++||. +++.+..+..|...|.+++|+|+++ .++++
T Consensus 372 ~~~----~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~ 444 (577)
T 2ymu_A 372 NRN----GQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQ-TIASA 444 (577)
T ss_dssp ETT----CCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred cCC----CCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCC-EEEEE
Confidence 964 467778889999999999998 8999999999999999996 5778888899999999999999998 69999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
+.|+.|++||.. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||.. ++.......|...|++++|+|+++
T Consensus 445 ~~d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~~~~~~h~~~v~~l~~s~dg~ 521 (577)
T 2ymu_A 445 SDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQ 521 (577)
T ss_dssp ETTSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSS
T ss_pred cCCCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEEEEEeCCCCCEEEEEEcCCCC
Confidence 999999999975 45677888999999999999999999999999999999964 446666777889999999999999
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+| ++++ .|+.|++||.. ++. +..+.+|.+.|++++|+||+++|++++.|+.|++|+
T Consensus 522 ~l-~s~~--~dg~v~lwd~~-~~~-~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 522 TI-ASAS--DDKTVKLWNRN-GQL-LQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CE-EEEE--TTSEEEEECTT-SCE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EE-EEEE--CcCEEEEEeCC-CCE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 84 5555 69999999964 444 788999999999999999999999999999999995
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-46 Score=316.36 Aligned_cols=292 Identities=14% Similarity=0.239 Sum_probs=244.2
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCC----cceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCc
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKD----TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA 75 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 75 (330)
.|.+.|++++|+|++++++++ ||.|++|++.. .+....+..+ ...|.+++|+|+++++|++++.||.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~~~dg~ 137 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH-------SSSVKTVKFNAKQDNVLASGGNNGE 137 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCS-------SSCCCEEEECSSSTTBEEEECSSSC
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCC-------ccceEEEEEcCCCCCEEEEEcCCCe
Confidence 588999999999999995555 99999999987 2333333333 3346999999933899999999999
Q ss_pred EEEEECCCCC------CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC------CCCe
Q psy6213 76 VVVWNLGQIS------RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN------TESV 143 (330)
Q Consensus 76 i~iw~~~~~~------~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~v 143 (330)
|++||+.+.. ..........|...|.+++|+|+++.+|++++.|+.|++||+++++.+..+..+ ...+
T Consensus 138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 217 (416)
T 2pm9_A 138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL 217 (416)
T ss_dssp EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence 9999998743 122233346789999999999944899999999999999999999988888766 7889
Q ss_pred EEEEEcCCCCcEEEEEecCC---cEEEEecCCCccceeeec-cCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCCCCcc
Q psy6213 144 RDVEFNPHSPYAFASVSENG---TIQQWDVRRPEKCFYQFT-AHSGPIFACDWHP-EHAWLATASRDKTIKVWDLSIKPS 218 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~ 218 (330)
.+++|+|++..++++++.|+ .|++||+++...+...+. +|...|.+++|+| ++++|++++.||.|++||+++++.
T Consensus 218 ~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~ 297 (416)
T 2pm9_A 218 SVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297 (416)
T ss_dssp EEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE
T ss_pred EEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc
Confidence 99999999876899999998 999999998657777887 8999999999999 999999999999999999999877
Q ss_pred ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceE-------------------------------
Q psy6213 219 LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLAS------------------------------- 267 (330)
Q Consensus 219 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~------------------------------- 267 (330)
......|...+.+++|+|+++.++++++ .|+.|++||+.+.......
T Consensus 298 ~~~~~~~~~~v~~~~~s~~~~~~l~s~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (416)
T 2pm9_A 298 LSQFPARGNWCFKTKFAPEAPDLFACAS--FDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFH 375 (416)
T ss_dssp EEEEECSSSCCCCEEECTTCTTEEEECC--SSSEEEEEESCCCCCSSCC----------------------CCSCCCSSC
T ss_pred ceeecCCCCceEEEEECCCCCCEEEEEe--cCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccccc
Confidence 7777788899999999999944567776 6999999999876532211
Q ss_pred ---eecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 268 ---FTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 268 ---~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
...|..++.+++|+|+|++|++++.||.|++|+..
T Consensus 376 ~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 376 LQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp CCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred ccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 01156788899999999999999999999999754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-44 Score=295.74 Aligned_cols=288 Identities=20% Similarity=0.299 Sum_probs=235.3
Q ss_pred CCcccceEEEEeeC-CCee-ecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKAD-NGLA-QPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~-~~~~-~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
.|.++|++++|+|+ +++| +++ |++|+|||+.+++........ ....+...|.+++|+| ++++|++++.|+.|++
T Consensus 36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~--~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR--ALRGHSHFVSDVVISS-DGQFALSGSWDGTLRL 112 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE--EECCCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE--EEeCCCCCEEEEEECC-CCCEEEEEcccccceE
Confidence 59999999999998 5675 555 999999999876532221111 1122345589999999 9999999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-eeeeecCCCCeEEEEEcCCCC-cEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-TKIFHSNTESVRDVEFNPHSP-YAF 156 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~~~ 156 (330)
|+... .........+...+....+++ ++.+|++++.|+.+++||...... ......|...+..++|++++. .++
T Consensus 113 ~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 113 WDLTT---GTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EETTT---TEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred Eeecc---cceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 99987 666777777888899999998 889999999999999999876544 334556888999999998764 357
Q ss_pred EEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcC
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRP 236 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 236 (330)
++++.|+.|++||+++ .+....+.+|.+.|++++|+|++++|++++.||.|++||+++.+... ...+...+..++|+|
T Consensus 189 ~s~~~d~~i~i~d~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~ 266 (340)
T 4aow_A 189 VSCGWDKLVKVWNLAN-CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY-TLDGGDIINALCFSP 266 (340)
T ss_dssp EEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE-EEECSSCEEEEEECS
T ss_pred EEEcCCCEEEEEECCC-CceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee-eecCCceEEeeecCC
Confidence 8899999999999998 67788889999999999999999999999999999999999885443 444567899999999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCcc--------ceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIP--------LASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
++.. ++++. |+.|++||+++.... .....+|...|++++|+||+++|++|+.||.|++|+..
T Consensus 267 ~~~~-~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 267 NRYW-LCAAT---GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp SSSE-EEEEE---TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CCce-eeccC---CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9874 66665 999999999876431 12234688899999999999999999999999999754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-45 Score=305.28 Aligned_cols=288 Identities=15% Similarity=0.260 Sum_probs=240.4
Q ss_pred CCcccceEEEEeeC---CC--eeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccC----CcEEEEEc
Q psy6213 2 AYLSPVHKHGLKAD---NG--LAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE----ENHIATGA 71 (330)
Q Consensus 2 ~H~~~v~~~~~s~~---~~--~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~ 71 (330)
.|.++|++++|+|+ +. +++++ ++.|++|++.+++....+..+... .+...|.+++|+| + +.+|++|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~~~~~l~~~~ 92 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA--DADENFYTCAWTY-DSNTSHPLLAVAG 92 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS--CTTCCEEEEEEEE-CTTTCCEEEEEEE
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc--CCCCcEEEEEecc-CCCCCCCEEEEec
Confidence 59999999999984 44 36666 889999999988776655544321 2345589999999 6 67999999
Q ss_pred CCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee---ecCCCCeEEEEE
Q psy6213 72 TNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF---HSNTESVRDVEF 148 (330)
Q Consensus 72 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~ 148 (330)
.||.|++||+.+ .+....+..|...|.+++|+|.++++|++++.||.|++||+++++.+..+ ..|...|.+++|
T Consensus 93 ~dg~i~v~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 93 SRGIIRIINPIT---MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp TTCEEEEECTTT---CCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred CCCEEEEEEchh---ceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999988 67788888999999999999877899999999999999999999988887 678999999999
Q ss_pred cCCCCcEEEEEecCCcEEEEecCCCccceeeec----------------------------cCCCCeEEEEEcCCCCEEE
Q psy6213 149 NPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT----------------------------AHSGPIFACDWHPEHAWLA 200 (330)
Q Consensus 149 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------~~~~~i~~~~~~~~~~~l~ 200 (330)
+|+++ .+++++.||.|++||+++ .+....+. .|...|.+++|+ +++++
T Consensus 170 ~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 245 (366)
T 3k26_A 170 DLLGE-KIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 245 (366)
T ss_dssp CTTSS-EEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred CCCCC-EEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence 99998 699999999999999987 33333332 389999999998 77999
Q ss_pred EEecCCcEEEEeCCCCcc--------------ccceeccccceEEEEEcCC--CCeEEEEeecccCCeEEEEEccCCCc-
Q psy6213 201 TASRDKTIKVWDLSIKPS--------------LEYSINTIASVSRIKWRPQ--RKFHLASCSLVVDSSVNVWDIRRPYI- 263 (330)
Q Consensus 201 ~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~i~i~d~~~~~~- 263 (330)
+++.||.|++||+++... ......+...+.+++|+|+ +++ +++++ .||.|++||+.+++.
T Consensus 246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~-l~~~~--~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKM-LALGN--QVGKLYVWDLEVEDPH 322 (366)
T ss_dssp EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSE-EEEEC--TTSCEEEEECCSSSGG
T ss_pred EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcE-EEEEe--cCCcEEEEECCCCCCc
Confidence 999999999999987644 3333446678899999999 887 55555 599999999998753
Q ss_pred --cceEeecC--CCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 264 --PLASFTEH--KDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 264 --~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
....+..| ...|.+++|+|++++|++++.||.|++|+..
T Consensus 323 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 323 KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 23466777 7899999999999999999999999999753
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=300.22 Aligned_cols=286 Identities=16% Similarity=0.232 Sum_probs=238.5
Q ss_pred CCcccceEEEEeeCCCe-eecC-----CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccC---CcEEEEEcC
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-----RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE---ENHIATGAT 72 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~ 72 (330)
.|.++|++++|+|++.. +++| |+.|++||+.+++........ +...|.+++|+| + +++|++|+.
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~------~~~~v~~~~~~~-~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE------KAKPIKCGTFGA-TSLQQRYLATGDF 88 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEE------ESSCEEEEECTT-CCTTTCCEEEEET
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeec------ccCcEEEEEEcC-CCCCCceEEEecC
Confidence 48999999999999976 6666 689999999988765443322 233479999999 6 799999999
Q ss_pred CCcEEEEECCCCCCCc-eeEEecccccceeEEEE------EecCCCEEEEEecCCcEEEEEeecCc-eeeeeecCCC---
Q psy6213 73 NGAVVVWNLGQISRSK-QERVFNDHKRTVNKVSF------HYVESNWLISGSQDGTMRLFDIRCQE-STKIFHSNTE--- 141 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~-~~~~~~~~~~~i~~i~~------~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~--- 141 (330)
||.|++||+.+ .+ ....+..|...|.++.| +| ++++|++++.||.|++||+++++ ....+..+..
T Consensus 89 dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (357)
T 3i2n_A 89 GGNLHIWNLEA---PEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK 164 (357)
T ss_dssp TSCEEEECTTS---CSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred CCeEEEEeCCC---CCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence 99999999987 44 67788899999999965 55 78899999999999999999887 6777765544
Q ss_pred -CeEEEE----EcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC---CCCEEEEEecCCcEEEEeC
Q psy6213 142 -SVRDVE----FNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP---EHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 142 -~v~~~~----~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~ 213 (330)
.+.+++ |+|++. ++++++.||.|++||+++. +. .....|...|.+++|+| ++.+|++++.||.|++||+
T Consensus 165 ~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNM-AL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp CCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTT-EE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred CceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccC-ce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 788998 678888 6999999999999999974 33 34456889999999999 9999999999999999999
Q ss_pred CCCcccccee-----ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc------------------cceEeec
Q psy6213 214 SIKPSLEYSI-----NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI------------------PLASFTE 270 (330)
Q Consensus 214 ~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~------------------~~~~~~~ 270 (330)
++.+...... .+...+.+++|+|+++.++++++ .||.|++||++.+.. .+..+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG--GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE--TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe--CCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence 8875544443 68899999999999995577776 699999999986542 3567788
Q ss_pred CCCCeEEEEEecCCCEEE-EeecCCeEeeeeccc
Q psy6213 271 HKDVVSGLAWRGDPQLFI-ASSRVSIIPRAKNIK 303 (330)
Q Consensus 271 ~~~~v~~~~~~~~~~~l~-s~~~dg~i~iw~~~~ 303 (330)
|...|.+++|+|++++|+ +++.||.|++|+..+
T Consensus 320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 999999999999999998 899999999997653
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-44 Score=300.35 Aligned_cols=282 Identities=12% Similarity=0.151 Sum_probs=231.7
Q ss_pred CCcccceEEEEeeCC-CeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADN-GLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~-~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
.|.+.|++++|+|++ +++++| ||.|++||+.+++....+... .+...|.+++|+|.++++|++++.|+.|++
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM-----GPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC-----STTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC-----CcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 589999999999999 775555 999999999988766555431 233457999999966799999999999999
Q ss_pred EECCCCCCCceeEEec---ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcE
Q psy6213 79 WNLGQISRSKQERVFN---DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
||+.. .....+. .|...|.+++|+| ++++|++++.|+.|++||+ +++.+..+..|...|.+++|+|+++++
T Consensus 146 wd~~~----~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 146 RDFSG----SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp EETTS----CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred EECCC----CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 99985 3333333 4458899999998 8999999999999999999 577888899999999999999999877
Q ss_pred EEEEecCCcEEEEecCCCc---cceeeeccCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCCCCccccceecc------
Q psy6213 156 FASVSENGTIQQWDVRRPE---KCFYQFTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLSIKPSLEYSINT------ 225 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------ 225 (330)
+++++.|+.|++||+++.. ..+..+ .|...|.+++|+| ++++|++++.|+.|++||+++.+.......+
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 298 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ 298 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence 9999999999999998732 233444 6999999999999 9999999999999999999987654443322
Q ss_pred -----------ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec--CCCCeEEEEEecCCCEEEEeec
Q psy6213 226 -----------IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE--HKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 226 -----------~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
...+..++|+|++++ +++ .|+.|++||+.+++. +..+.+ |...+..++|+|++++|++++
T Consensus 299 ~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s--~d~~i~iwd~~~~~~-~~~l~~~~~~~~~~~~~~s~~g~~l~s~s- 371 (383)
T 3ei3_B 299 HLTPIKATWHPMYDLIVAGRYPDDQL---LLN--DKRTIDIYDANSGGL-VHQLRDPNAAGIISLNKFSPTGDVLASGM- 371 (383)
T ss_dssp TSCCCCCEECSSSSEEEEECBCCTTT---CTT--CCCCEEEEETTTCCE-EEEECBTTBCSCCCEEEECTTSSEEEEEE-
T ss_pred cccceEEeccCCCCceEEEecCCccc---ccC--CCCeEEEEecCCCce-eeeecCCCCCceEEEEEEecCccEEEEec-
Confidence 134555677777765 444 699999999998876 777776 457788889999999999997
Q ss_pred CCeEeeeecc
Q psy6213 293 VSIIPRAKNI 302 (330)
Q Consensus 293 dg~i~iw~~~ 302 (330)
||.|++|+..
T Consensus 372 d~~i~iw~~~ 381 (383)
T 3ei3_B 372 GFNILIWNRE 381 (383)
T ss_dssp TTEEEEEECC
T ss_pred CCcEEEEecC
Confidence 9999999864
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=303.48 Aligned_cols=280 Identities=13% Similarity=0.141 Sum_probs=238.5
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcc------eeeeeceeeccccccccceeeeeecccC----C---cE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTE------FVETHNLRVGKNINLNFSCNDVAWSCIE----E---NH 66 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~---~~ 66 (330)
.|.++|++++|+| ++ ++++ ||.|++|++.+++ ....+. .+...|.+++|+| + + ++
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~-~~~~~g~~~~~ 83 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-------VHKSGLHHVDVLQ-AIERDAFELCL 83 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-------CCTTCEEEEEEEE-EEETTTEEEEE
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-------cCCCcEEEEEEec-ccccCCccccE
Confidence 5999999999999 55 5656 9999999999877 333333 2334579999999 7 8 99
Q ss_pred EEEEcCCCcEEEEECCCCCCCce-----eEEeccc-----ccceeEEEEE----ecCCCE-EEEEecCCcEEEEEeec--
Q psy6213 67 IATGATNGAVVVWNLGQISRSKQ-----ERVFNDH-----KRTVNKVSFH----YVESNW-LISGSQDGTMRLFDIRC-- 129 (330)
Q Consensus 67 l~~~~~dg~i~iw~~~~~~~~~~-----~~~~~~~-----~~~i~~i~~~----~~~~~~-l~~~~~d~~i~i~d~~~-- 129 (330)
|++++.||.|++|++.+ ... ...+..| ...|.+++|+ | ++++ |++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITR---EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEETTSCEEEEEEEE---CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEcCCCCEEEEEccC---CcccccccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccc
Confidence 99999999999999987 343 6677778 5999999999 8 7888 99999999999999998
Q ss_pred ----Cceee-----eee-------cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc---C---CCCe
Q psy6213 130 ----QESTK-----IFH-------SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA---H---SGPI 187 (330)
Q Consensus 130 ----~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~---~---~~~i 187 (330)
++.+. .+. .|...+.+++|+|++ ++++++.||.|++||+++ .+.+..+.. | ...|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELST-LRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT-TEEEEEEECCC---CCCCCE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCC-CceeEEEeccccccccCCcc
Confidence 66666 663 478899999999999 699999999999999998 667788888 8 9999
Q ss_pred EEEEEcCCCCEEEEEecC---CcEEEEeCCCCccccceec-------------cccceEEEEEcCCCCeEEEEeecccCC
Q psy6213 188 FACDWHPEHAWLATASRD---KTIKVWDLSIKPSLEYSIN-------------TIASVSRIKWRPQRKFHLASCSLVVDS 251 (330)
Q Consensus 188 ~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~~~~~~ 251 (330)
.+++|+|++++|++++.| |.|++||+++++....... +...+.+++|+|++++++ +++ .|+
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~--~dg 313 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC-SAG--WDG 313 (397)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE-EEE--TTS
T ss_pred ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE-EEe--CCC
Confidence 999999999999999999 9999999998866666665 889999999999999754 555 599
Q ss_pred eEEEEEccCCCccceEee------cC---------------CCCeEEEEEecCC----------CEEEEeecCCeEeeee
Q psy6213 252 SVNVWDIRRPYIPLASFT------EH---------------KDVVSGLAWRGDP----------QLFIASSRVSIIPRAK 300 (330)
Q Consensus 252 ~i~i~d~~~~~~~~~~~~------~~---------------~~~v~~~~~~~~~----------~~l~s~~~dg~i~iw~ 300 (330)
.|++||+++++. +..+. .| ...|.+++|+|++ ++|++++.||.|++|+
T Consensus 314 ~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 314 KLRFWDVKTKER-ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp EEEEEETTTTEE-EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred eEEEEEcCCCce-eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 999999998865 77787 77 8999999999998 7999999999999997
Q ss_pred cc
Q psy6213 301 NI 302 (330)
Q Consensus 301 ~~ 302 (330)
..
T Consensus 393 ~~ 394 (397)
T 1sq9_A 393 EA 394 (397)
T ss_dssp EE
T ss_pred cC
Confidence 53
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-44 Score=323.27 Aligned_cols=287 Identities=18% Similarity=0.318 Sum_probs=233.8
Q ss_pred CCcccceEEEEeeCC-Cee-ecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADN-GLA-QPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~-~~~-~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
+|.+.|++++|+|++ +++ +++ |+.|++|++......... .......+...|.+++|+| ++++|++|+.||.|++
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~--~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGV--AQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRL 456 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCE--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccc--ccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEE
Confidence 699999999999976 554 555 999999999864321100 0011223344579999999 9999999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee---ecCCCCeEEEEEcCCCC-c
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF---HSNTESVRDVEFNPHSP-Y 154 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~-~ 154 (330)
||+.+ ......+.+|...|.+++|+| ++++|++|+.|++|++||.......... .+|...|.+++|+|++. .
T Consensus 457 wd~~~---~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 457 WDLAA---GVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EETTT---TEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EECCC---CcceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 99988 778888999999999999998 8999999999999999998654333222 35788899999999873 3
Q ss_pred EEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEE
Q psy6213 155 AFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKW 234 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 234 (330)
.+++++.|+.|++||+++ .+....+.+|.+.|++++|+|++++|++++.||.|++||+++++.+. ...+...+.+++|
T Consensus 533 ~l~s~s~d~~v~vwd~~~-~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~ 610 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSN-CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY-SLEANSVIHALCF 610 (694)
T ss_dssp EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE-CCBCSSCEEEEEE
T ss_pred eEEEEeCCCeEEEEECCC-CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-EecCCCcEEEEEE
Confidence 699999999999999997 66778889999999999999999999999999999999999885543 3345678999999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC-------------------CCCeEEEEEecCCCEEEEeecCCe
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH-------------------KDVVSGLAWRGDPQLFIASSRVSI 295 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~s~~~dg~ 295 (330)
+|++.+ ++++. ++.|++||++++.. +..+..+ ...+++++|+|+|++|++|+.||.
T Consensus 611 sp~~~~-l~~~~---~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 611 SPNRYW-LCAAT---EHGIKIWDLESKSI-VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp CSSSSE-EEEEE---TTEEEEEETTTTEE-EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred cCCCcE-EEEEc---CCCEEEEECCCCCC-hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 999986 56665 78899999998764 4433321 123789999999999999999999
Q ss_pred Eeeeecc
Q psy6213 296 IPRAKNI 302 (330)
Q Consensus 296 i~iw~~~ 302 (330)
|++|+..
T Consensus 686 i~iW~i~ 692 (694)
T 3dm0_A 686 IRVWGIG 692 (694)
T ss_dssp EEEEEC-
T ss_pred EEEEecc
Confidence 9999754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=313.29 Aligned_cols=289 Identities=12% Similarity=0.131 Sum_probs=223.8
Q ss_pred CcccceEEEEeeC-CCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 3 YLSPVHKHGLKAD-NGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 3 H~~~v~~~~~s~~-~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
|...|+|++|+|. +++|++| ||.|+|||+.+++........ .+...|++++|+|.++++|++|+.||+|++|
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~-----gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-----GAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC-----SSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc-----CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 7788999999995 4566666 999999999887654443322 2334579999998678999999999999999
Q ss_pred ECCCCCCCceeEEe--cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 80 NLGQISRSKQERVF--NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 80 ~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
|++. ....... ..+...+.+++|+| ++.+|++|+.||.|++||++ ++.+..+..|...|.+++|+|+++.+++
T Consensus 193 d~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 193 DFKG---NILRVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp ETTS---CEEEEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred eccC---CceeEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEE
Confidence 9976 3222222 23345678999998 89999999999999999986 5567788889999999999999988899
Q ss_pred EEecCCcEEEEecCCCcc--ceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccc------cce
Q psy6213 158 SVSENGTIQQWDVRRPEK--CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI------ASV 229 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~v 229 (330)
+++.|+.|++||+++... ......+|...|++++|+|+|++|++++.||.|++||++++........+. ..+
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCC
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccccee
Confidence 999999999999987432 223345799999999999999999999999999999999876544333322 123
Q ss_pred EEEEEcCCCCeEEEEeec---------ccCCeEEEEEccCCCccceEeecCCCCeEEE-EEecCCCEEEEeecCCeEeee
Q psy6213 230 SRIKWRPQRKFHLASCSL---------VVDSSVNVWDIRRPYIPLASFTEHKDVVSGL-AWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~---------~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~dg~i~iw 299 (330)
....|+|++..++++... ..++.|++||..+++.......+|...|.++ +|+|+|++|++|+ |+.|++|
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 344566666554443320 0356899999999876333445788889887 6999999999876 8899999
Q ss_pred ecc
Q psy6213 300 KNI 302 (330)
Q Consensus 300 ~~~ 302 (330)
+..
T Consensus 427 ~~~ 429 (435)
T 4e54_B 427 SQQ 429 (435)
T ss_dssp CCC
T ss_pred ECC
Confidence 754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=297.93 Aligned_cols=286 Identities=15% Similarity=0.159 Sum_probs=236.8
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcc--eeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTE--FVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVV 77 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 77 (330)
.|.++|++++|+|++++ ++++ |+.|++||+++++ ....+..+ ...|.+++|+| ++++|++++.||.|+
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~-~~~~l~~~~~dg~i~ 77 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH-------NGQVTGVDWAP-DSNRIVTCGTDRNAY 77 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC-------SSCEEEEEEET-TTTEEEEEETTSCEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC-------CCcccEEEEeC-CCCEEEEEcCCCeEE
Confidence 38899999999999999 4555 9999999999886 44443332 33479999999 999999999999999
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce---e-eeeecCCCCeEEEEEcCCCC
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES---T-KIFHSNTESVRDVEFNPHSP 153 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~-~~~~~~~~~v~~~~~~~~~~ 153 (330)
+||+.+. +......+..|...|.+++|+| ++++|++++.|+.|++||++.++. . .....|...|.+++|+|+++
T Consensus 78 vwd~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 155 (372)
T 1k8k_C 78 VWTLKGR-TWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155 (372)
T ss_dssp EEEEETT-EEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred EEECCCC-eeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC
Confidence 9999762 1122334467899999999998 899999999999999999998763 2 23355788999999999998
Q ss_pred cEEEEEecCCcEEEEecCC-----------------CccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC
Q psy6213 154 YAFASVSENGTIQQWDVRR-----------------PEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK 216 (330)
Q Consensus 154 ~~~~~~~~dg~i~i~d~~~-----------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 216 (330)
.+++++.||.|++||++. ....+..+..|...|.+++|+|++++|++++.||.|++||++++
T Consensus 156 -~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 156 -LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp -EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred -EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 699999999999999641 24567778889999999999999999999999999999999998
Q ss_pred ccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC--CCc-------------------------------
Q psy6213 217 PSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR--PYI------------------------------- 263 (330)
Q Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~--~~~------------------------------- 263 (330)
+.......+..++.+++|+|++.+ ++++. |+.|++|+++. +..
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESSL-VAAGH---DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS 310 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTEE-EEEET---TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred ceeEEEccCCCCeEEEEEecCCCE-EEEEe---CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccc
Confidence 777777778889999999999986 55555 99999999987 310
Q ss_pred cc------eEe-ecCCCCeEEEEEe-cCC---CEEEEeecCCeEeeeecc
Q psy6213 264 PL------ASF-TEHKDVVSGLAWR-GDP---QLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 264 ~~------~~~-~~~~~~v~~~~~~-~~~---~~l~s~~~dg~i~iw~~~ 302 (330)
.. ..+ .+|..+|++++|. ++| ++|++++.||.|++|+..
T Consensus 311 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 311 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp --------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred cccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 00 222 4899999999977 566 999999999999999754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=301.09 Aligned_cols=242 Identities=22% Similarity=0.387 Sum_probs=222.9
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
+..+|++++|+| ++.+|++|+.||.|++||+.+ .+....+.+|...|.+++|+| ++++|++|+.|++|++||+.+
T Consensus 107 h~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~---~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 107 HRSPVTRVIFHP-VFSVMVSASEDATIKVWDYET---GDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CSSCEEEEEECS-SSSEEEEEESSSCEEEEETTT---CCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTS
T ss_pred cCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC---CcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Confidence 456789999999 999999999999999999988 677888999999999999998 899999999999999999999
Q ss_pred CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 130 QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 130 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+++ +.++..+.+|...|.++.++|++.+|++++.|+.|+
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCC-CcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 999999999999999999999998 699999999999999998 667888999999999999999999999999999999
Q ss_pred EEeCCCCccccceeccccceEEEEEcCC--------------------CCeEEEEeecccCCeEEEEEccCCCccceEee
Q psy6213 210 VWDLSIKPSLEYSINTIASVSRIKWRPQ--------------------RKFHLASCSLVVDSSVNVWDIRRPYIPLASFT 269 (330)
Q Consensus 210 i~d~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 269 (330)
+||+++.+.......|...|.+++|+|+ +.+ +++++ .|+.|++||++++.. +..+.
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-l~sgs--~D~~i~iwd~~~~~~-~~~~~ 335 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF-LLSGS--RDKTIKMWDVSTGMC-LMTLV 335 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE-EEEEE--TTSEEEEEETTTTEE-EEEEE
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCE-EEEEe--CCCeEEEEECCCCce-EEEEE
Confidence 9999998777777788899999999997 454 66666 699999999998865 78889
Q ss_pred cCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 270 EHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 270 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+|...|.+++|+|++++|++++.||.|++|+..
T Consensus 336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 999999999999999999999999999999853
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=290.39 Aligned_cols=241 Identities=18% Similarity=0.346 Sum_probs=216.7
Q ss_pred CCcccceEEEEeeCCCeeec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|...|.+++|+|++.++++ + |+.|++||+.+++....+..+.. .+.+++|+| ++++|++|+.||.|++|
T Consensus 78 gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~-------~~~~~~~sp-dg~~l~~g~~dg~v~i~ 149 (321)
T 3ow8_A 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV-------DAWTLAFSP-DSQYLATGTHVGKVNIF 149 (321)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT-------CCCCEEECT-TSSEEEEECTTSEEEEE
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc-------cEEEEEECC-CCCEEEEEcCCCcEEEE
Confidence 58999999999999999544 4 99999999999887766544332 357899999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
++++ .+....+..|...+.+++|+| ++++|++|+.||.|++||+++++.+..+.+|..+|.+++|+|+++ +|+++
T Consensus 150 ~~~~---~~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~ 224 (321)
T 3ow8_A 150 GVES---GKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTA 224 (321)
T ss_dssp ETTT---CSEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEEE
T ss_pred EcCC---CceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEEE
Confidence 9988 667777888999999999999 899999999999999999999999999999999999999999998 69999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
+.|+.|++||+++ ......+.+|...|.+++|+|++++|++++.|+.|++||+++++.......|...|.+++|+|+++
T Consensus 225 s~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~ 303 (321)
T 3ow8_A 225 SDDGYIKIYDVQH-ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS 303 (321)
T ss_dssp CTTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred cCCCeEEEEECCC-cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 9999999999997 566788899999999999999999999999999999999999877777778899999999999999
Q ss_pred eEEEEeecccCCeEEEEEcc
Q psy6213 240 FHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~ 259 (330)
++ ++++ .|+.|++||..
T Consensus 304 ~l-~s~~--~d~~i~vwd~p 320 (321)
T 3ow8_A 304 KI-VSVG--DDQEIHIYDCP 320 (321)
T ss_dssp EE-EEEE--TTCCEEEEECC
T ss_pred EE-EEEe--CCCeEEEEeCC
Confidence 75 4555 59999999963
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=304.84 Aligned_cols=283 Identities=13% Similarity=0.132 Sum_probs=222.0
Q ss_pred CcccceEEEEeeCCCeeecC--CCeEEEEEcCCc--ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDT--EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
|.++|++++|+|+|++++++ |+.|++||+.++ +....+..| ...|.+++|+| ++++|++++.||.|++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h-------~~~v~~~~~s~-~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDH-------DKIVTCVDWAP-KSNRIVTCSQDRNAYV 81 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCC-------SSCEEEEEECT-TTCCEEEEETTSSEEE
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecC-------CceEEEEEEeC-CCCEEEEEeCCCeEEE
Confidence 56899999999999995555 999999999987 444433333 34479999999 8999999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc---eeeeeec-CCCCeEEEEEcCCCCc
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE---STKIFHS-NTESVRDVEFNPHSPY 154 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~ 154 (330)
||+.+.........+..|...|.+++|+| ++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|+++
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~- 159 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV- 159 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-
Confidence 99987332336677788999999999998 89999999999999999999887 3677777 899999999999998
Q ss_pred EEEEEecCCcEEEEecCCC-----------------ccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCc
Q psy6213 155 AFASVSENGTIQQWDVRRP-----------------EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKP 217 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~-----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 217 (330)
++++++.|+.|++||++.. ..+...+ .|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 6999999999999998521 3344555 899999999999999999999999999999999987
Q ss_pred c----ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC-cc----------------------------
Q psy6213 218 S----LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY-IP---------------------------- 264 (330)
Q Consensus 218 ~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~-~~---------------------------- 264 (330)
. ......+..++.+++|+|++++ +++++ ++.+.+|+..... ..
T Consensus 239 ~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (377)
T 3dwl_C 239 QPPRALITVKLSQLPLRSLLWANESAI-VAAGY---NYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGP 314 (377)
T ss_dssp SCEEECCCEECSSSCEEEEEEEETTEE-EEEES---SSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---
T ss_pred CcceeeEeecCCCCceEEEEEcCCCCE-EEEEc---CCcEEEEEeCCCceEEEeeecccccccccccccccccccccccc
Confidence 6 6667778889999999999986 56665 4555577765211 00
Q ss_pred c------e----------------EeecCCCCeEEEEEecCC-C---EEEEeecCCeEeeee
Q psy6213 265 L------A----------------SFTEHKDVVSGLAWRGDP-Q---LFIASSRVSIIPRAK 300 (330)
Q Consensus 265 ~------~----------------~~~~~~~~v~~~~~~~~~-~---~l~s~~~dg~i~iw~ 300 (330)
. . ....|...|+++++.++. . .|+|++.||.|++|+
T Consensus 315 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 315 VSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp ----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 0 0 011389999999977643 3 699999999999996
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=283.61 Aligned_cols=277 Identities=18% Similarity=0.162 Sum_probs=239.1
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++| |++++ ++++ ||.|++||+.+++....+..+. ..|.+++|+| ++++|++++.||.+++|
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~-------~~v~~~~~~~-~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQ-------GFLNSVCYDS-EKELLLFGGKDTMINGV 86 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECS-------SCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCC-------ccEEEEEECC-CCCEEEEecCCCeEEEE
Confidence 69999999999 88988 4444 9999999998887666555443 3369999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcC-CCCcEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP-HSPYAFAS 158 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~ 158 (330)
++......+....+..|...|.++.|. ++++++++.|+.|++|| .++....+..|...+.+++|.| +++ .+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSEN-KFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTT-EEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCC-EEEE
Confidence 998765567778888999999999994 67999999999999999 6778888888999999999998 565 7999
Q ss_pred EecCCcEEEEecCCCccceeeecc-CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCC
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTA-HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQ 237 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 237 (330)
++.||.|++||.. .....+.. |...+.+++|+|++. +++++.||.|++||+++++.......+...+.+++|+|+
T Consensus 161 ~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 236 (313)
T 3odt_A 161 ASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN 236 (313)
T ss_dssp EETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred EECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC
Confidence 9999999999943 44555665 889999999999998 999999999999999998777777778999999999999
Q ss_pred CCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 238 RKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
+. +++++ .||.|++||+++++. ...+..|...|.+++|+|+++ +++++.||.|++|+...
T Consensus 237 ~~-l~~~~---~dg~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 237 GD-IVSCG---EDRTVRIWSKENGSL-KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp SC-EEEEE---TTSEEEEECTTTCCE-EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred CC-EEEEe---cCCEEEEEECCCCce-eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 94 45444 599999999999876 788889999999999999998 66799999999998653
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-44 Score=304.07 Aligned_cols=290 Identities=19% Similarity=0.329 Sum_probs=241.1
Q ss_pred CcccceEEEEeeCCC-e-eec----------C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEE
Q psy6213 3 YLSPVHKHGLKADNG-L-AQP----------S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIAT 69 (330)
Q Consensus 3 H~~~v~~~~~s~~~~-~-~~~----------g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 69 (330)
+..+|.+++|+|+|+ + +++ + |+.|++||+.+++...... ...+...|.+++|+| ++++|++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~-----~~~~~~~v~~~~~s~-~~~~l~~ 84 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA-----SLQVDSKFNDLDWSH-NNKIIAG 84 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC-----CCCCSSCEEEEEECS-SSSCEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE-----EEecCCceEEEEECC-CCCeEEE
Confidence 456899999999997 6 666 6 8899999999876331111 112334579999999 9999999
Q ss_pred EcCCCcEEEEECCCCCC-CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc------eeee---eecC
Q psy6213 70 GATNGAVVVWNLGQISR-SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE------STKI---FHSN 139 (330)
Q Consensus 70 ~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~---~~~~ 139 (330)
++.||.|++|++..... ......+..|...|.+++|+|+++++|++++.|+.|++||+++++ .... +..|
T Consensus 85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp EESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred EccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 99999999999976322 247778889999999999999448999999999999999999876 3332 3568
Q ss_pred CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccC------CCCeEEEEEcCCC-CEEEEEecCC---cEE
Q psy6213 140 TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH------SGPIFACDWHPEH-AWLATASRDK---TIK 209 (330)
Q Consensus 140 ~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~i~~~~~~~~~-~~l~~~~~dg---~i~ 209 (330)
...|.+++|+|++..++++++.||.|++||+++ .+....+..+ ...+.+++|+|++ .++++++.|+ .|+
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~ 243 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDLKA-KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSIL 243 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCEEEEETTT-TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCC
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC-CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEE
Confidence 889999999999555899999999999999998 5566666655 7889999999997 6899999998 999
Q ss_pred EEeCCCCcc-cccee-ccccceEEEEEcC-CCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCC-C
Q psy6213 210 VWDLSIKPS-LEYSI-NTIASVSRIKWRP-QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDP-Q 285 (330)
Q Consensus 210 i~d~~~~~~-~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 285 (330)
+||+++... ..... .|...+.+++|+| ++++ +++++ .|+.|++||+++++. +..+..|...|.+++|+|++ .
T Consensus 244 ~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-l~s~~--~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~ 319 (416)
T 2pm9_A 244 IWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL-LLSSG--RDNTVLLWNPESAEQ-LSQFPARGNWCFKTKFAPEAPD 319 (416)
T ss_dssp EEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC-EEEEE--SSSEEEEECSSSCCE-EEEEECSSSCCCCEEECTTCTT
T ss_pred EEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe-EEEEe--CCCCEEEeeCCCCcc-ceeecCCCCceEEEEECCCCCC
Confidence 999998643 44444 6889999999999 7886 55555 599999999998866 88889999999999999998 8
Q ss_pred EEEEeecCCeEeeeeccc
Q psy6213 286 LFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 286 ~l~s~~~dg~i~iw~~~~ 303 (330)
+|++++.||.|++|+...
T Consensus 320 ~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 320 LFACASFDNKIEVQTLQN 337 (416)
T ss_dssp EEEECCSSSEEEEEESCC
T ss_pred EEEEEecCCcEEEEEccC
Confidence 999999999999998653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=299.25 Aligned_cols=286 Identities=18% Similarity=0.255 Sum_probs=239.8
Q ss_pred CcccceEEEEeeCCC-eeecC--CCeEEEEEc----CCcce------eeeeceeec---cccccccceeeeeecccCCcE
Q psy6213 3 YLSPVHKHGLKADNG-LAQPS--RNVFKIFLI----KDTEF------VETHNLRVG---KNINLNFSCNDVAWSCIEENH 66 (330)
Q Consensus 3 H~~~v~~~~~s~~~~-~~~~g--d~~i~iw~~----~~~~~------~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~ 66 (330)
|.++|++++|+|+|+ ++++| ||.|++|++ .+++. ...+..... ....+...|.+++|+| ++++
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 122 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGNS 122 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-TSSE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-CCCE
Confidence 668999999999999 85555 999999999 77762 222211100 0011344689999999 9999
Q ss_pred EEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCC----
Q psy6213 67 IATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES---- 142 (330)
Q Consensus 67 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---- 142 (330)
|++++.||.|++||. + ......+..|...|.+++|+| ++++|++++.|+.|++||+++++.+..+..+...
T Consensus 123 l~~~~~dg~i~i~~~-~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 123 IVTGVENGELRLWNK-T---GALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp EEEEETTSCEEEEET-T---SCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred EEEEeCCCeEEEEeC-C---CCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 999999999999993 3 577788889999999999998 8999999999999999999999998888877766
Q ss_pred -----------eEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 143 -----------VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 143 -----------v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
+.+++|+|++ .+++++.+|.|++||+++ ......+..|...|.+++|+|++++|++++.||.|++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITE-KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp --------CCCBSCCEEEETT--EEEEECGGGCEEEEETTC-SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCC-CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 9999999986 488999999999999998 56777888899999999999999999999999999999
Q ss_pred eCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEee
Q psy6213 212 DLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 212 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
|+++.+.......+...+.+++|+|++ . +++++ .|+.|++||+++++. +..+..|...|.+++|+|++++|++++
T Consensus 275 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~-l~~~~--~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 275 HGGNGNSQNCFYGHSQSIVSASWVGDD-K-VISCS--MDGSVRLWSLKQNTL-LALSIVDGVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp CSSSBSCSEEECCCSSCEEEEEEETTT-E-EEEEE--TTSEEEEEETTTTEE-EEEEECTTCCEEEEEECTTSSEEEEEE
T ss_pred ECCCCccceEecCCCccEEEEEECCCC-E-EEEEe--CCCcEEEEECCCCcE-eEecccCCccEEEEEEcCCCCEEEEEE
Confidence 999987777777788999999999999 5 55555 599999999998865 778889999999999999999999999
Q ss_pred cCCeEeeeecc
Q psy6213 292 RVSIIPRAKNI 302 (330)
Q Consensus 292 ~dg~i~iw~~~ 302 (330)
.||.|++|+..
T Consensus 350 ~dg~i~i~~~~ 360 (425)
T 1r5m_A 350 MDGQVNVYDLK 360 (425)
T ss_dssp TTSCEEEEECH
T ss_pred CCCeEEEEECC
Confidence 99999999864
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=308.22 Aligned_cols=277 Identities=23% Similarity=0.379 Sum_probs=240.7
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|..+|++++|+|+++.++++ |+.|++|+.. ++....+..+ ...|.+++|+| +++.|++++.||.|++|
T Consensus 260 ~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h-------~~~v~~~~~~~-~~~~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-------SSSVWGVAFSP-DGQTIASASDDKTVKLW 330 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCC-------SSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecC-------CCCeEEEEECC-CCCEEEEEeCCCeEEEE
Confidence 588999999999999995554 9999999975 4444444333 33468999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|... .....+..|...+.+++|+| +++++++++.|+.|++||. +++.+..+..|...|.+++|+|+++ .++++
T Consensus 331 ~~~~----~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~-~l~~~ 403 (577)
T 2ymu_A 331 NRNG----QHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ-TIASA 403 (577)
T ss_dssp ETTS----CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSS-CEEEE
T ss_pred eCCC----CeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCC-EEEEE
Confidence 9865 45667788999999999998 8999999999999999995 5778888889999999999999999 48999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
+.|+.|++||.. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||... +.......|...+.+++|+|+++
T Consensus 404 ~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~ 480 (577)
T 2ymu_A 404 SDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQ 480 (577)
T ss_dssp ETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSC
T ss_pred eCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCC
Confidence 999999999964 566778889999999999999999999999999999999754 45666677889999999999999
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+ +++++ .|+.|++||.. ++. +..+.+|...|++++|+|++++|++++.||.|++|+..
T Consensus 481 ~-las~~--~d~~i~iw~~~-~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 481 T-IASAS--DDKTVKLWNRN-GQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp E-EEEEE--TTSEEEEEETT-SCE-EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred E-EEEEe--CCCEEEEEcCC-CCE-EEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 7 55555 59999999964 444 78899999999999999999999999999999999854
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=302.79 Aligned_cols=280 Identities=14% Similarity=0.145 Sum_probs=233.2
Q ss_pred cceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCC
Q psy6213 6 PVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 83 (330)
.+++++|+|+|++++++ |+.+++||+.+++.......+ . .+....|+| ++++|++|+.||.|++||+.+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~------~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--D------YTAVDTAKL-QMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--C------EEEEEEECS-SSCEEEEEETTSCEEEECTTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--C------ceEEEEEec-CCCEEEEEECCCCEEEEeCCC
Confidence 45689999999995555 999999999887654433322 1 134556788 999999999999999999987
Q ss_pred CCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC
Q psy6213 84 ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG 163 (330)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg 163 (330)
......+..|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.+|...|.+++|+|+++ .+++++.||
T Consensus 129 ---~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~ 203 (420)
T 3vl1_A 129 ---NLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR-NVLSASLDG 203 (420)
T ss_dssp ---CEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT-EEEEEETTS
T ss_pred ---cceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC-EEEEEcCCC
Confidence 677777789999999999999 899999999999999999999999999999999999999999998 689999999
Q ss_pred cEEEEecCCCccceeeecc---C---------------------CCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc
Q psy6213 164 TIQQWDVRRPEKCFYQFTA---H---------------------SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL 219 (330)
Q Consensus 164 ~i~i~d~~~~~~~~~~~~~---~---------------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 219 (330)
.|++||+++ .+....+.. + ...+.+++|+|++++|++++.||.|++||+++++..
T Consensus 204 ~v~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 204 TIRLWECGT-GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp CEEEEETTT-TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred cEEEeECCC-CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 999999997 555655553 2 245556667899999999999999999999988654
Q ss_pred ccee-ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec-CCCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 220 EYSI-NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE-HKDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 220 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
.... .+...+.+++|+|+++.++++++ .||.|++||+++++.++..+.. |...|.++.+ +++++|++++.||.|+
T Consensus 283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDGNNANYIYAGY--ENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIK 359 (420)
T ss_dssp EEECCTTSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEE
T ss_pred EEcccccCCCceeEEEeCCCCCEEEEEe--CCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEE
Confidence 4443 46789999999999994466666 6999999999998766777776 6677888855 5788999999999999
Q ss_pred eeeccc
Q psy6213 298 RAKNIK 303 (330)
Q Consensus 298 iw~~~~ 303 (330)
+|+...
T Consensus 360 iw~~~~ 365 (420)
T 3vl1_A 360 LDIISD 365 (420)
T ss_dssp EEEECC
T ss_pred EEeccC
Confidence 998553
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=299.09 Aligned_cols=279 Identities=16% Similarity=0.254 Sum_probs=241.0
Q ss_pred CcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
|.+.|++++|+|++++++++ ||.|++|| .+++....+..+. ..|.+++|+| ++++|++++.||.|++||
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~-------~~v~~~~~~~-~~~~l~~~~~d~~i~iwd 177 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHR-------APIVSVKWNK-DGTHIISMDVENVTILWN 177 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCC-------SCEEEEEECT-TSSEEEEEETTCCEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCC-------ccEEEEEECC-CCCEEEEEecCCeEEEEE
Confidence 67899999999999995555 99999999 5555555544332 3479999999 999999999999999999
Q ss_pred CCCCCCCceeEEecccccc---------------eeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEE
Q psy6213 81 LGQISRSKQERVFNDHKRT---------------VNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRD 145 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~---------------i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~ 145 (330)
+.+ .+....+..+... +.++.|+| + ..+++++.+|.|++||+++++.+..+..|...|.+
T Consensus 178 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~ 252 (425)
T 1r5m_A 178 VIS---GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISV 252 (425)
T ss_dssp TTT---TEEEEEECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEE
T ss_pred CCC---CcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEE
Confidence 987 6777777777766 99999997 4 66999999999999999999999999899999999
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecc
Q psy6213 146 VEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT 225 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 225 (330)
++|+|+++ .+++++.||.|++||+++ .+....+..|...|.+++|+|++ ++++++.|+.|++||+++++.......+
T Consensus 253 ~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 329 (425)
T 1r5m_A 253 LEFNDTNK-LLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD 329 (425)
T ss_dssp EEEETTTT-EEEEEETTSCEEEECSSS-BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT
T ss_pred EEECCCCC-EEEEEcCCCEEEEEECCC-CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC
Confidence 99999998 699999999999999998 66777888899999999999999 9999999999999999998777777778
Q ss_pred ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC-------------------ccceEeecCCC--CeEEEEEecCC
Q psy6213 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY-------------------IPLASFTEHKD--VVSGLAWRGDP 284 (330)
Q Consensus 226 ~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~-------------------~~~~~~~~~~~--~v~~~~~~~~~ 284 (330)
...+.+++|+|+++++++ ++ .||.|++||+++.. .++..+..|.. .|.+++|+|++
T Consensus 330 ~~~i~~~~~s~~~~~l~~-~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 406 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAV-AF--MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG 406 (425)
T ss_dssp TCCEEEEEECTTSSEEEE-EE--TTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred CccEEEEEEcCCCCEEEE-EE--CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence 889999999999997554 44 59999999998765 13778888876 99999999999
Q ss_pred CEEEEeecCCeEeeeec
Q psy6213 285 QLFIASSRVSIIPRAKN 301 (330)
Q Consensus 285 ~~l~s~~~dg~i~iw~~ 301 (330)
++|++++.||.|++|+.
T Consensus 407 ~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 407 NKISVAYSLQEGSVVAI 423 (425)
T ss_dssp SEEEEEESSSCCEEEEC
T ss_pred ceEEEEecCceEEEEee
Confidence 99999999999999975
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=293.07 Aligned_cols=281 Identities=20% Similarity=0.362 Sum_probs=238.3
Q ss_pred ceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC
Q psy6213 7 VHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS 85 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 85 (330)
++.|+||++ ++|++| |++|+|||..+++....+..+.+ ...|++++|+| ++++|++|+.||.|++||+.+
T Consensus 108 ~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~-----~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~-- 178 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQP-----GEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQ-- 178 (420)
T ss_dssp CBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCST-----TCCEEEEEECT-TSSEEEEEETTSCEEEEETTT--
T ss_pred ceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCC-----CCcEEEEEECC-CCCEEEEEECCCeEEEEEcCC--
Confidence 567999975 478888 99999999999998877665433 23379999999 999999999999999999988
Q ss_pred CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC-ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 86 RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 86 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
.+.+..+.+|...+.++.++ +.++++|+.|+.+++||.... ..+..+.+|...+..+.++|++. .+++++.|+.
T Consensus 179 -~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~ 253 (420)
T 4gga_A 179 -QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNL 253 (420)
T ss_dssp -TEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred -CcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeecccc
Confidence 78888999999999998875 579999999999999998764 44677888999999999999998 6999999999
Q ss_pred EEEEecCCCcc---ceeeeccCCCCeEEEEEcCCC-CEEEEE--ecCCcEEEEeCCCCccccceeccccceEEEEEcCCC
Q psy6213 165 IQQWDVRRPEK---CFYQFTAHSGPIFACDWHPEH-AWLATA--SRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQR 238 (330)
Q Consensus 165 i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~-~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 238 (330)
+++||..++.. .+.....|...|.+++|+|.+ .+++++ +.|+.|++||+.+++... .......+.++.|+|++
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~-~~~~~~~v~~~~~~~~~ 332 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-AVDAHSQVCSILWSPHY 332 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE-EEECSSCEEEEEEETTT
T ss_pred ceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce-eeccccceeeeeecCCC
Confidence 99999986432 345667789999999999965 455554 479999999999985443 44456789999999999
Q ss_pred CeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccce
Q psy6213 239 KFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 304 (330)
+.++++++ ..|+.|++||+.+++. +..+.+|.+.|++++|+|||++|+||+.||+|++|+..+.
T Consensus 333 ~~lv~~sg-~~d~~I~iwd~~~~~~-v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 333 KELISGHG-FAQNQLVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TEEEEEEC-TTTCCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred CeEEEEEe-cCCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 98766543 1589999999999876 8899999999999999999999999999999999986543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=291.15 Aligned_cols=293 Identities=15% Similarity=0.243 Sum_probs=237.5
Q ss_pred CCcccceEEEEee-CCCeeecC--CCeEEEEEcCCcceeeeeceee------ccccccccceeeeeecccCCcEEEEEcC
Q psy6213 2 AYLSPVHKHGLKA-DNGLAQPS--RNVFKIFLIKDTEFVETHNLRV------GKNINLNFSCNDVAWSCIEENHIATGAT 72 (330)
Q Consensus 2 ~H~~~v~~~~~s~-~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 72 (330)
.|.++|++++|+| +++++++| ||.|++||+.+++......... .....+...|.+++|+|.++.+|++++.
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 5999999999999 99995554 9999999999876554443211 1112345668999999977789999999
Q ss_pred CCcEEEEECCCCCCCceeEEecccccceeEEEEEec--CCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcC
Q psy6213 73 NGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV--ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 150 (330)
||.|++||+.+ .+....+. +...+.++.++|. ++.++++++.|+.|++||+++++.+..+..|...|.+++|+|
T Consensus 121 d~~i~iwd~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 121 DKTLKVWDTNT---LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp TSEEEEEETTT---TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred CCeEEEeeCCC---Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence 99999999987 55555554 7788999999874 334999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCcEEEEecCCCccceeee---------------ccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCC
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQF---------------TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 215 (330)
++++++++++.||.|++||+++.......+ ..|...|.+++|+|++++|++++.||.|++||+++
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 999889999999999999998755444444 56889999999999999999999999999999998
Q ss_pred Cccccceecc-----ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEe
Q psy6213 216 KPSLEYSINT-----IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIAS 290 (330)
Q Consensus 216 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 290 (330)
++.......+ ...+........+..+++++. ++.|++||+.+++. +..+.+|...|.+++|+|++++|+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY---GSTIAVYTVYSGEQ-ITMLKGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE---TTEEEEEETTTCCE-EEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEec---CCEEEEEECcCCcc-eeeeccCCCeEEEEEEcCCCCEEEEE
Confidence 7553322211 112222222333444466654 99999999998876 88899999999999999999999999
Q ss_pred ecCCeEeeeecc
Q psy6213 291 SRVSIIPRAKNI 302 (330)
Q Consensus 291 ~~dg~i~iw~~~ 302 (330)
+.||.|++|+..
T Consensus 353 ~~dg~i~iw~~~ 364 (408)
T 4a11_B 353 SRDCNILAWVPS 364 (408)
T ss_dssp ETTSCEEEEEEC
T ss_pred CCCCeEEEEeCC
Confidence 999999999865
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=285.76 Aligned_cols=282 Identities=17% Similarity=0.248 Sum_probs=235.2
Q ss_pred CcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
|.++|.+++|+|||++++++ ++.+..|............ .+...|.+++|+| ++++|++++ ||.|++|+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~ 78 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-------NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWD 78 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEE-------CCSSCCCEEEECS-SSSEEEEEC-BSEEEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceec-------cCCCceEEEEEec-CCcEEEEcC-CCeEEEEE
Confidence 56789999999999996555 6666666444322221111 2334479999999 999999999 99999999
Q ss_pred CCCCCCCceeEEec--ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc--eeeeeecCCCCeEEEEEcCCCCcEE
Q psy6213 81 LGQISRSKQERVFN--DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE--STKIFHSNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~ 156 (330)
+.+.........+. .|...|.+++|+| +++++++++.|+.|++||+++++ ....+..|...+.+++|+|+++ .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 156 (337)
T 1gxr_A 79 ISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VC 156 (337)
T ss_dssp TTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EE
T ss_pred CCCCCceeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC-EE
Confidence 98754444444444 7889999999998 89999999999999999999877 5666778889999999999998 68
Q ss_pred EEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcC
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRP 236 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 236 (330)
++++.||.|++||+++ .+....+..|...+.+++|+|++++|++++.||.|++||+++++.. ....+...+.+++|+|
T Consensus 157 ~~~~~dg~v~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~v~~~~~s~ 234 (337)
T 1gxr_A 157 FSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL-QQHDFTSQIFSLGYCP 234 (337)
T ss_dssp EEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEECT
T ss_pred EEEeCCCcEEEEeCCC-CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE-eeecCCCceEEEEECC
Confidence 9999999999999998 6677888889999999999999999999999999999999988443 3345678899999999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+++++++++ .++.|++||+++++ ...+..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 235 ~~~~l~~~~---~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 235 TGEWLAVGM---ESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp TSSEEEEEE---TTSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEc---CCCcEEEEECCCCC--eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 999755554 59999999999876 45678899999999999999999999999999999854
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-42 Score=290.31 Aligned_cols=279 Identities=17% Similarity=0.306 Sum_probs=233.6
Q ss_pred ceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC
Q psy6213 7 VHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS 85 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 85 (330)
+.+++|++ +.+++++ |+.|++||+.+++........ ....|.+++|+| ++++|++|+.||.|++||+.+
T Consensus 96 ~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~------~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~-- 165 (401)
T 4aez_A 96 LNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETD------ESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVES-- 165 (401)
T ss_dssp CBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECC------TTCCEEEEEECT-TSSEEEEEETTSCEEEEETTT--
T ss_pred EEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecC------CCCCEEEEEECC-CCCEEEEECCCCeEEEEECcC--
Confidence 33455554 3347777 999999999998876655442 233479999999 999999999999999999988
Q ss_pred CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee-cCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 86 RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR-CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 86 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
.+....+..|...|.+++|+ ++++++++.||.|++||++ .......+..|...|.+++|+|+++ .+++++.||.
T Consensus 166 -~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~ 240 (401)
T 4aez_A 166 -QTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNV 240 (401)
T ss_dssp -CCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred -CeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCe
Confidence 67888888999999999995 5799999999999999998 4666788888999999999999998 6999999999
Q ss_pred EEEEecCCCccceeeeccCCCCeEEEEEcCCC-CEEEEEe--cCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeE
Q psy6213 165 IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATAS--RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFH 241 (330)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 241 (330)
|++||+++ ......+..|...|.+++|+|++ .++++++ .|+.|++||+++++... ...+...+.+++|+|+++++
T Consensus 241 v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~s~~~~~l 318 (401)
T 4aez_A 241 VQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN-TVDAGSQVTSLIWSPHSKEI 318 (401)
T ss_dssp EEEEETTC-SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE-EEECSSCEEEEEECSSSSEE
T ss_pred EEEccCCC-CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE-EEeCCCcEEEEEECCCCCeE
Confidence 99999998 66777888899999999999976 4566655 79999999999885443 44567889999999999986
Q ss_pred EEEeecccCCeEEEEEccCCCc-cceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 242 LASCSLVVDSSVNVWDIRRPYI-PLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 242 ~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
+++++ ..||.|++||+.++.. ....+.+|...|.+++|+|++++|++++.||.|++|+...
T Consensus 319 ~~~~g-~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 319 MSTHG-FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp EEEEC-TTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred EEEee-cCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 66531 1599999999998643 2345678999999999999999999999999999998653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-43 Score=291.45 Aligned_cols=250 Identities=17% Similarity=0.244 Sum_probs=205.7
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.|.+.|++++|+|++++++++ ||.|+|||+.+++........ ...+...|.+++|+| ++++|++|+.||.|++||
T Consensus 92 ~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~---~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd 167 (357)
T 4g56_B 92 QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFA---KYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWD 167 (357)
T ss_dssp ECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEE---ECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeec---cCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEE
Confidence 478899999999999998888 999999999987654433322 122345589999999 999999999999999999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee--cCCCCeEEEEEcCCCCcEEEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH--SNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~ 158 (330)
+.+ .+....+..|...|.+++|+|.+..++++++.|+.|++||++++++...+. .+...+.+++|+|++..++++
T Consensus 168 ~~~---~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~ 244 (357)
T 4g56_B 168 LSQ---KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC 244 (357)
T ss_dssp TTT---TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred CCC---CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEE
Confidence 988 788888999999999999998555789999999999999999888766554 466789999999998778999
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCC-CEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcC-
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRP- 236 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~- 236 (330)
|+.|+.|++||+++ .+....+..|...|++++|+|++ ++|++++.|++|++||+++++. .....|...|++++|+|
T Consensus 245 g~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~-~~~~~H~~~V~~vafsP~ 322 (357)
T 4g56_B 245 GDETGNVSLVNIKN-PDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV-FRDLSHRDFVTGVAWSPL 322 (357)
T ss_dssp EESSSCEEEEESSC-GGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE-EEECCCSSCEEEEEECSS
T ss_pred eecccceeEEECCC-CcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE-eEECCCCCCEEEEEEeCC
Confidence 99999999999998 66788899999999999999987 5799999999999999998844 44567889999999999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
++.+ +++++ .|+.|++|++.....
T Consensus 323 d~~~-l~s~s--~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 323 DHSK-FTTVG--WDHKVLHHHLPSEGR 346 (357)
T ss_dssp STTE-EEEEE--TTSCEEEEECC----
T ss_pred CCCE-EEEEc--CCCeEEEEECCCCCc
Confidence 6775 66766 799999999976543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=278.07 Aligned_cols=280 Identities=19% Similarity=0.341 Sum_probs=235.3
Q ss_pred ceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC
Q psy6213 7 VHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS 85 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 85 (330)
.++|+||+++ +|++| |++|+|||+++++....+..+.+. ..|++++|+| ++++|++|+.||.|++|++++
T Consensus 28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~-----~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~-- 98 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPG-----EYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQ-- 98 (318)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTT-----CCEEEEEECT-TSSEEEEEETTSEEEEEETTT--
T ss_pred ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCC-----CeEEEEEECC-CCCEEEEEECCCcEEEeecCC--
Confidence 4679999886 77778 999999999999988776654332 3379999999 999999999999999999998
Q ss_pred CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc-eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 86 RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE-STKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 86 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
.+.+..+.+|...+.++.+ ++..+++++.++.+++|+..... .+..+.+|...+..+.+.++++ .+++++.||.
T Consensus 99 -~~~~~~~~~h~~~~~~~~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~ 173 (318)
T 4ggc_A 99 -QKRLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNL 173 (318)
T ss_dssp -TEEEEEEECCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred -ceeEEEecCccceEEEeec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcc
Confidence 7888889999988887665 46799999999999999987654 4567788999999999999998 6999999999
Q ss_pred EEEEecCCCcc---ceeeeccCCCCeEEEEEcCCCCE---EEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCC
Q psy6213 165 IQQWDVRRPEK---CFYQFTAHSGPIFACDWHPEHAW---LATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQR 238 (330)
Q Consensus 165 i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~---l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 238 (330)
|++||++++.. .......+.+.|.++.++|++.. +++++.++.|++||.+... ......+...+..+.|+|++
T Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-~~~~~~~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDAHSQVCSILWSPHY 252 (318)
T ss_dssp EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC-EEEEEECSSCEEEEEEETTT
T ss_pred eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc-ccccccceeeeeeeeecccc
Confidence 99999987432 23445567889999999997653 3456688999999998874 44445567889999999999
Q ss_pred CeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 239 KFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
..++++++ ..|+.|++||+++++. +..+.+|.+.|++++|+|++++|++|+.||+|++|+..+
T Consensus 253 ~~~~~~sg-~~d~~i~iwd~~~~~~-~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 253 KELISGHG-FAQNQLVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TEEEEEEC-TTTCCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred cceEEEEE-cCCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 98665542 1589999999999876 889999999999999999999999999999999998654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=303.76 Aligned_cols=294 Identities=9% Similarity=0.074 Sum_probs=223.5
Q ss_pred CcccceEEEEeeCC---------Ceeec-------------------C--CCeEEEEEcCCcceeeeeceeecccccccc
Q psy6213 3 YLSPVHKHGLKADN---------GLAQP-------------------S--RNVFKIFLIKDTEFVETHNLRVGKNINLNF 52 (330)
Q Consensus 3 H~~~v~~~~~s~~~---------~~~~~-------------------g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 52 (330)
+.+.|.+|+|+|++ +++++ + |++|+||++++++........ ......
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~---l~~~~~ 208 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT---IVHSFG 208 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE---EEECCC
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE---EEecCC
Confidence 56789999999987 45333 3 789999999887643211100 011123
Q ss_pred ceeeeeeccc-----CCcEEEEEcCCCcEEEEECCCCCCC--------ceeEEecccccceeEEEEEecCCCEEEEEecC
Q psy6213 53 SCNDVAWSCI-----EENHIATGATNGAVVVWNLGQISRS--------KQERVFNDHKRTVNKVSFHYVESNWLISGSQD 119 (330)
Q Consensus 53 ~v~~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 119 (330)
.|.+++|+|. ++.+||+++.||+|++||+...... .+...+.+|...|.+++|+| + ..|++|+.|
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~D 286 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKN 286 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETT
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCC
Confidence 4799999993 2579999999999999999763211 12346778999999999997 4 589999999
Q ss_pred CcEEEEEeecCc-eeeeeecCCCCeEEE--EEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCC--CeEEEEEcC
Q psy6213 120 GTMRLFDIRCQE-STKIFHSNTESVRDV--EFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSG--PIFACDWHP 194 (330)
Q Consensus 120 ~~i~i~d~~~~~-~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~i~~~~~~~ 194 (330)
|+|++||+++++ +...+..|...|.++ +|+|++..+|++++.|++|++||+++ .+....+.+|.. .+.+++|+|
T Consensus 287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~-~~~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD-IATTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG-HHHHCEEEEECSCCSCCCEEEET
T ss_pred CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC-CCcccccccccccCcccceEeCC
Confidence 999999998764 455688899999999 56787734799999999999999997 455556666653 588999999
Q ss_pred CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC------------
Q psy6213 195 EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY------------ 262 (330)
Q Consensus 195 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~------------ 262 (330)
+++.+++++.|++|++||++++........|...|.+++|+|++++ +++++ .|++|++||+....
T Consensus 366 ~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs--~Dgtv~lwd~~~~~~~~~~~~~~~~~ 442 (524)
T 2j04_B 366 QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM-VLAGS--ADGSLIITNAARRLLHGIKNSSATQK 442 (524)
T ss_dssp TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB-CEEEE--TTTEEECCBSCSSTTTCC------CC
T ss_pred CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCe-EEEEE--CCCEEEEEechHhhccccccCcccee
Confidence 9999999999999999999998776667789999999999999997 55555 69999999853210
Q ss_pred -------------------------------ccceEeecCCCCeEEEEEecCC---CEEEEeecCCeEeeeecccee
Q psy6213 263 -------------------------------IPLASFTEHKDVVSGLAWRGDP---QLFIASSRVSIIPRAKNIKIF 305 (330)
Q Consensus 263 -------------------------------~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~i~iw~~~~~~ 305 (330)
..+..+.+|...|.+++|+|++ ..+|+|+.||.|+||+.....
T Consensus 443 ~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 443 SLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp CCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred eeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 0122345678899999999985 499999999999999876443
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=301.97 Aligned_cols=284 Identities=14% Similarity=0.239 Sum_probs=224.1
Q ss_pred CCcccceEEEEee-CCCeeecC--CCeEEEEEcCC---cceee-eeceeeccccccccceeeeeecccCCcEEEEEcCCC
Q psy6213 2 AYLSPVHKHGLKA-DNGLAQPS--RNVFKIFLIKD---TEFVE-THNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG 74 (330)
Q Consensus 2 ~H~~~v~~~~~s~-~~~~~~~g--d~~i~iw~~~~---~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 74 (330)
.|.++|++++|+| +++++++| ||.|++||+.+ +.... ... ..+...|.+++|+| ++++|++|+.||
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~-~~~~l~s~s~dg 133 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT------YDCSSTVTQITMIP-NFDAFAVSSKDG 133 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE------EECSSCEEEEEECT-TSSEEEEEETTS
T ss_pred CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee------ccCCCCEEEEEEeC-CCCEEEEEeCCC
Confidence 4889999999999 99995554 99999999976 33111 111 12345589999999 999999999999
Q ss_pred cEEEEECCCCCCCceeEEecc------------cccceeEEE--EEecCCCEEEEEecCCcEEEEEeecCceeeeeec--
Q psy6213 75 AVVVWNLGQISRSKQERVFND------------HKRTVNKVS--FHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS-- 138 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~------------~~~~i~~i~--~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-- 138 (330)
.|++||++.....+....... +...+.++. ++| ++.+|++++.|+.|++||+++++.+..+..
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 212 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSP 212 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence 999999952111333332221 445566666 345 788999999999999999999999999987
Q ss_pred CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec-cCCCCeEEEEEcC----CCCEEEEEecCCcEEEEeC
Q psy6213 139 NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT-AHSGPIFACDWHP----EHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 139 ~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~ 213 (330)
|...|++++|+|++. .+++++.||.|++||+++ .+++..+. .|..+|.+++|+| ++.+|++++.||.|++||+
T Consensus 213 h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 213 RHGAVSSICIDEECC-VLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp GGCCEEEEEECTTSC-EEEEEETTSCEEEEETTT-TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred CCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 789999999999988 699999999999999998 66666665 6788999996654 6789999999999999999
Q ss_pred CCCcccccee--------------------------ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceE
Q psy6213 214 SIKPSLEYSI--------------------------NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLAS 267 (330)
Q Consensus 214 ~~~~~~~~~~--------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~ 267 (330)
++++...... .+...|.+++|+ ++++ +++++ .|+.|++||+.+++. ...
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~-l~s~~--~d~~i~~wd~~~~~~-~~~ 365 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKI-LLTDE--ATSSIVMFSLNELSS-SKA 365 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEE-EEEEG--GGTEEEEEETTCGGG-CEE
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceE-EEecC--CCCeEEEEECCCccc-ceE
Confidence 8775432222 155678999999 6665 55555 699999999998765 444
Q ss_pred eec-------------------------------------CCCCeEEEEEecC--CCEEEEeecCCeEeeee
Q psy6213 268 FTE-------------------------------------HKDVVSGLAWRGD--PQLFIASSRVSIIPRAK 300 (330)
Q Consensus 268 ~~~-------------------------------------~~~~v~~~~~~~~--~~~l~s~~~dg~i~iw~ 300 (330)
+.+ |...|++++|+++ +.+|++++.||.|++|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 443 8899999999998 88999999999999995
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=276.70 Aligned_cols=247 Identities=17% Similarity=0.261 Sum_probs=206.7
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEec-CCCEEEEEecCCcEEEEEeec
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV-ESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~l~~~~~d~~i~i~d~~~ 129 (330)
...|.+++|+| ++++|++|+.|+.|++||+... ..+....+.+|.++|.+++|+|. ++++|++|+.|++|++||+++
T Consensus 9 ~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~-~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 9 NEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred cCceEEEEECC-CCCEEEEEeCCCEEEEEecCCC-CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 34479999999 9999999999999999999752 24567788999999999999863 478999999999999999987
Q ss_pred Cc--eeeeeecCCCCeEEEEEcCC--CCcEEEEEecCCcEEEEecCCCcc-ceeeeccCCCCeEEEEEcCC---------
Q psy6213 130 QE--STKIFHSNTESVRDVEFNPH--SPYAFASVSENGTIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPE--------- 195 (330)
Q Consensus 130 ~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~--------- 195 (330)
++ .+..+..|...|.+++|+|+ +. ++++++.|+.|++||+++... ....+.+|...|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--------
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCC
Confidence 74 55667779999999999997 66 699999999999999987432 24567789999999999997
Q ss_pred ----CCEEEEEecCCcEEEEeCCCCcc----ccceeccccceEEEEEcCCC--CeEEEEeecccCCeEEEEEccCCCcc-
Q psy6213 196 ----HAWLATASRDKTIKVWDLSIKPS----LEYSINTIASVSRIKWRPQR--KFHLASCSLVVDSSVNVWDIRRPYIP- 264 (330)
Q Consensus 196 ----~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~~~~~i~i~d~~~~~~~- 264 (330)
+++|++++.|+.|++||+++.+. ......|...|.+++|+|++ ..++++++ .|+.|++||++....+
T Consensus 166 ~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s--~D~~v~iWd~~~~~~~~ 243 (297)
T 2pm7_B 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS--QDRTCIIWTQDNEQGPW 243 (297)
T ss_dssp ----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCC
T ss_pred CCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE--CCCcEEEEEeCCCCCcc
Confidence 57999999999999999987642 33445688999999999996 33577777 7999999999875321
Q ss_pred -ceEe--ecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 265 -LASF--TEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 265 -~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
...+ ..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 244 ~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 244 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 1223 4678899999999999999999999999999754
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-43 Score=292.14 Aligned_cols=289 Identities=11% Similarity=0.072 Sum_probs=213.5
Q ss_pred ccceEEEEeeCCCeeecC--C-------CeEEEEEcCCcceeeeeceeecc---ccccccceeeeeecccCCcEEEEE--
Q psy6213 5 SPVHKHGLKADNGLAQPS--R-------NVFKIFLIKDTEFVETHNLRVGK---NINLNFSCNDVAWSCIEENHIATG-- 70 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g--d-------~~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~-- 70 (330)
-||++++|+|||++|++| + +.|++|+++.+............ .......+.+++++ ++.+++|
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~~ 91 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVGCN 91 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEECC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEEEC
Confidence 489999999999996654 2 35999999875432221111111 11122334666554 4566655
Q ss_pred ---------cCCCcEEEEECCCCCCC-ceeEEe-----cccccceeEEEEEecCCCEEEEE--ecCCcEEEEEeecCcee
Q psy6213 71 ---------ATNGAVVVWNLGQISRS-KQERVF-----NDHKRTVNKVSFHYVESNWLISG--SQDGTMRLFDIRCQEST 133 (330)
Q Consensus 71 ---------~~dg~i~iw~~~~~~~~-~~~~~~-----~~~~~~i~~i~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~ 133 (330)
+.|+.+++|++...... ...... ..+...+.+++|+| ++++++++ +.|++|++||+++++++
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 45778999998663211 111111 23445688999999 88887654 47899999999999998
Q ss_pred eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccce-eeeccCCCCeEEEEEcCCCCEEEEEecCC----cE
Q psy6213 134 KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF-YQFTAHSGPIFACDWHPEHAWLATASRDK----TI 208 (330)
Q Consensus 134 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i 208 (330)
..+. |...|.+++|+|+++ ++++++.+ .+++|+..++.... .....|...+.+++|+|+++++++++.|+ .+
T Consensus 171 ~~~~-~~~~V~~v~fspdg~-~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 171 FEIE-TRGEVKDLHFSTDGK-VVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEEE-CSSCCCEEEECTTSS-EEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEE
T ss_pred EEeC-CCCceEEEEEccCCc-eEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEE
Confidence 8886 778899999999998 57787754 56666666534332 34556888999999999999999999887 58
Q ss_pred EEEeCCCCcc----ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceE-eecCCCCeEEEEEecC
Q psy6213 209 KVWDLSIKPS----LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLAS-FTEHKDVVSGLAWRGD 283 (330)
Q Consensus 209 ~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~ 283 (330)
++||+..... ......+..+|++++|+|+|++ +++++ .|+.|+|||+++++. +.. +.+|...|++++|+||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~-lasgs--~D~~V~iwd~~~~~~-~~~~~~gH~~~V~~v~fSpd 323 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL-AVLAS--NDNSIALVKLKDLSM-SKIFKQAHSFAITEVTISPD 323 (365)
T ss_dssp EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE-EEEEE--TTSCEEEEETTTTEE-EEEETTSSSSCEEEEEECTT
T ss_pred eecccccceecceeeeeecCCCCCeEeEEECCCCCc-eEEEc--CCCEEEEEECCCCcE-EEEecCcccCCEEEEEECCC
Confidence 8899876643 2234457788999999999997 56666 699999999999876 554 5789999999999999
Q ss_pred CCEEEEeecCCeEeeeeccce
Q psy6213 284 PQLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 284 ~~~l~s~~~dg~i~iw~~~~~ 304 (330)
|++||++|.|++|+||+....
T Consensus 324 g~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 324 STYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999986543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=292.29 Aligned_cols=289 Identities=15% Similarity=0.248 Sum_probs=218.7
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcc-----------eeeeeceeecc-----ccccccceeeeeecccC
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTE-----------FVETHNLRVGK-----NINLNFSCNDVAWSCIE 63 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~-----------~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~ 63 (330)
.|.+.|++++|+|+|+++++| ||.|+||++.+++ ....+..|... ...+...|.+++|+| +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-Q 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-C
Confidence 578999999999999995555 9999999999866 23333333200 011124579999999 6
Q ss_pred C--cEEEEEcCCCcEEEEECCCCCCC------------------------------------ceeEE-ecccccceeEEE
Q psy6213 64 E--NHIATGATNGAVVVWNLGQISRS------------------------------------KQERV-FNDHKRTVNKVS 104 (330)
Q Consensus 64 ~--~~l~~~~~dg~i~iw~~~~~~~~------------------------------------~~~~~-~~~~~~~i~~i~ 104 (330)
+ .+|++++.||.|++||+...... ..... ..+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 6 79999999999999998651100 00112 367999999999
Q ss_pred EEecCCCEEEEEecCCcEEEEEeec-Cceee-------eeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc-
Q psy6213 105 FHYVESNWLISGSQDGTMRLFDIRC-QESTK-------IFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK- 175 (330)
Q Consensus 105 ~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~- 175 (330)
|+| ++++|++| .|+.|++||+++ ++... .+..|...|.+++|+|++..++++++.||.|++||+++...
T Consensus 185 ~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 185 INS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp ECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 999 89999998 799999999984 33443 35578899999999999844799999999999999998432
Q ss_pred --ceeeeccCCC------------CeEEEEEcCCCCEEEEEecCCcEEEEeCCC-Cccccceeccccc------------
Q psy6213 176 --CFYQFTAHSG------------PIFACDWHPEHAWLATASRDKTIKVWDLSI-KPSLEYSINTIAS------------ 228 (330)
Q Consensus 176 --~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~------------ 228 (330)
....+..|.. .|.+++|+|++++|++++. +.|++||++. ++.......+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 1567777765 8999999999999999999 9999999987 5444444444321
Q ss_pred ---eEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee---------------------------------cCC
Q psy6213 229 ---VSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT---------------------------------EHK 272 (330)
Q Consensus 229 ---v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~---------------------------------~~~ 272 (330)
+..++|+|+++++ ++++ .||.|++||+.+++. + .+. .+.
T Consensus 342 i~~~~~~~~s~~~~~l-~s~s--~dg~v~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVV-MTGS--YNNFFRMFDRNTKRD-I-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFN 416 (447)
T ss_dssp GGCCCCEEECTTSSEE-EEEC--STTEEEEEETTTCCE-E-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTT
T ss_pred cccceEEEECCCCCEE-EEec--cCCEEEEEEcCCCcc-e-eeeecccccccccccCCccccccCCcccccccccccccC
Confidence 3349999999985 5555 699999999998764 2 222 234
Q ss_pred CCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 273 DVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 273 ~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
..|..++|+|++++||+++.++ +++|.
T Consensus 417 ~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 417 KKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp SCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred CceeEEEECCCCCEEEEEecce-eeeec
Confidence 5788999999999999998876 77774
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-41 Score=278.06 Aligned_cols=241 Identities=14% Similarity=0.278 Sum_probs=212.8
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
+...|.+++|+| ++++|++|+.||.|++||..+ ......+..|...|.+++|+| +++++++|+.|+.+++||+.+
T Consensus 54 H~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 54 HLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYT---TNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT---CCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTT
T ss_pred CCCceEEEEECC-CCCEEEEEeCCCcEEEEECCC---CCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECcc
Confidence 344579999999 999999999999999999987 677788889999999999999 899999999999999999976
Q ss_pred Cc----eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC
Q psy6213 130 QE----STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD 205 (330)
Q Consensus 130 ~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 205 (330)
.+ ....+.+|...|.++.|++++. +++++.|+.|++||+++ +.....+.+|.+.|.+++|+|+++++++++.|
T Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d 205 (340)
T 1got_B 129 REGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIET-GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp CSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCC-CcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 53 4566778999999999999874 88999999999999998 66778889999999999999999999999999
Q ss_pred CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee--cCCCCeEEEEEecC
Q psy6213 206 KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT--EHKDVVSGLAWRGD 283 (330)
Q Consensus 206 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~ 283 (330)
+.|++||++++........|...|.+++|+|++++ +++++ .|+.|++||++.++. +..+. .+...|.+++|+|+
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s--~d~~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~ 281 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA-FATGS--DDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECTT
T ss_pred CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCE-EEEEc--CCCcEEEEECCCCcE-EEEEccCCcccceEEEEECCC
Confidence 99999999998777777778899999999999997 55555 699999999998764 44443 23357999999999
Q ss_pred CCEEEEeecCCeEeeeecc
Q psy6213 284 PQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 284 ~~~l~s~~~dg~i~iw~~~ 302 (330)
+++|++|+.||.|++|+..
T Consensus 282 g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp SSEEEEEETTSEEEEEETT
T ss_pred CCEEEEECCCCeEEEEEcc
Confidence 9999999999999999854
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=287.93 Aligned_cols=281 Identities=13% Similarity=0.160 Sum_probs=228.8
Q ss_pred ccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 5 SPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
..+....|+|+++++++| ||.|++||+.+++....+..|. ..|.+++|+| ++++|++|+.||.|++||+.
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~ 169 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHV-------SEITKLKFFP-SGEALISSSQDMQLKIWSVK 169 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSS-------SCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccccc-------CccEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 344555789999995555 9999999999887665544433 3479999999 99999999999999999998
Q ss_pred CCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec---CCCCeEE--------------
Q psy6213 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS---NTESVRD-------------- 145 (330)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~v~~-------------- 145 (330)
+ .+....+.+|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.. +...+.+
T Consensus 170 ~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 245 (420)
T 3vl1_A 170 D---GSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245 (420)
T ss_dssp T---CCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred C---CcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence 8 677778889999999999998 899999999999999999999998888764 3334444
Q ss_pred -------EEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCC-EEEEEecCCcEEEEeCCCCc
Q psy6213 146 -------VEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHA-WLATASRDKTIKVWDLSIKP 217 (330)
Q Consensus 146 -------~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~ 217 (330)
++|+|+++ ++++++.||.|++||+++..........|...|.+++|+|+++ +|++++.||.|++||+++++
T Consensus 246 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 246 STSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp CCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred ccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 45577887 6899999999999999985554455556889999999999998 99999999999999999875
Q ss_pred c-ccceec-cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc--------ceEeecCCCCeEEEEEecCCC--
Q psy6213 218 S-LEYSIN-TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP--------LASFTEHKDVVSGLAWRGDPQ-- 285 (330)
Q Consensus 218 ~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~-- 285 (330)
. ...... +...+.++.+. ++++ +++++ .|+.|++|++..+..+ ...+..|...|.+++|+|+++
T Consensus 325 ~~~~~~~~~~~~~v~~~~~~-~~~~-l~s~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 400 (420)
T 3vl1_A 325 CPVGEFLINEGTPINNVYFA-AGAL-FVSSG--FDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESN 400 (420)
T ss_dssp SCSEEEEESTTSCEEEEEEE-TTEE-EEEET--TTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSS
T ss_pred CchhhhhccCCCCceEEEeC-CCCE-EEEec--CCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCc
Confidence 5 333333 66778888654 6665 55565 6999999999874321 334567888999999999999
Q ss_pred -EEEEeecCCeEeeeecc
Q psy6213 286 -LFIASSRVSIIPRAKNI 302 (330)
Q Consensus 286 -~l~s~~~dg~i~iw~~~ 302 (330)
.|++++.+|.+.+|+..
T Consensus 401 g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 401 GEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CEEEEEETTTEEEEEESC
T ss_pred ceEEEEcCCceEEEEecc
Confidence 78888899999999754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=309.22 Aligned_cols=282 Identities=18% Similarity=0.267 Sum_probs=242.9
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|++++|+|+|++++++ ||.|+|||+.+++....+..+.. .|.+++|+| ++++|++++.||.|++|
T Consensus 11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~s~-~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTET-------PVRAGKFIA-RKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-------CEEEEEEEG-GGTEEEEEETTSEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCC-------cEEEEEEeC-CCCEEEEEeCCCeEEEE
Confidence 489999999999999995555 99999999999887776654433 369999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC-ceeeeeecCCCCeEEEEEcC-CCCcEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-ESTKIFHSNTESVRDVEFNP-HSPYAFA 157 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~ 157 (330)
|+.+ ++....+..|...|.+++|+| ++.+|++++.||.|++||++++ .....+..|...|.+++|+| ++. .++
T Consensus 83 ~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~ 157 (814)
T 3mkq_A 83 NYNT---GEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFA 157 (814)
T ss_dssp ETTT---CCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-EEE
T ss_pred ECCC---CcEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-EEE
Confidence 9988 778888899999999999999 8999999999999999999987 66778888999999999999 565 799
Q ss_pred EEecCCcEEEEecCCCccceeeec-cCCCCeEEEEEcC--CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEE
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFT-AHSGPIFACDWHP--EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKW 234 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 234 (330)
+++.||.|++||+++.. ....+. .+...+.+++|+| ++.++++++.||.|++||+++++.......+...+.+++|
T Consensus 158 ~~~~dg~v~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 236 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQST-PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (814)
T ss_dssp EEETTSEEEEEETTCSS-CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EEeCCCeEEEEECCCCc-ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 99999999999998744 444444 4448899999999 9999999999999999999988777767778899999999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCE-EEEeecCCeEeeeec
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQL-FIASSRVSIIPRAKN 301 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iw~~ 301 (330)
+|++++ +++++ .||.|++||+.++.. ...+..|...+.+++|+|++.. +++++.++.+.+|+.
T Consensus 237 ~~~~~~-l~~~~--~dg~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 237 HPTLPI-IISGS--EDGTLKIWNSSTYKV-EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp CSSSSE-EEEEE--TTSCEEEEETTTCSE-EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred cCCCCE-EEEEe--CCCeEEEEECCCCcE-EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 999997 55555 599999999998866 7888889999999999999873 244555666777764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=278.88 Aligned_cols=278 Identities=13% Similarity=0.142 Sum_probs=230.2
Q ss_pred CCcccceEEEEeeCCCee-ecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCc-EEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGLA-QPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEEN-HIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~-~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~i 78 (330)
+|.+.|++++|+|+++++ +++ |+.|++|++.+++....... ...+...|.+++|+| +++ +|++|+.||.|++
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~----~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ----SLRYKHPLLCCNFID-NTDLQIYVGTVQGEILK 83 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEE----EEECSSCEEEEEEEE-SSSEEEEEEETTSCEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccccee----eeecCCceEEEEECC-CCCcEEEEEcCCCeEEE
Confidence 599999999999999994 444 99999999998762111111 112334579999999 899 9999999999999
Q ss_pred EEC-CCCCCCceeEEecc--cccceeEEEEEecCCCEEEEEecCCcEEEEEeec---------CceeeeeecCCCCeEEE
Q psy6213 79 WNL-GQISRSKQERVFND--HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC---------QESTKIFHSNTESVRDV 146 (330)
Q Consensus 79 w~~-~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~v~~~ 146 (330)
||+ .. . ....+.. |...|.+++|+| ++++++++.|+.|++||+++ ++++..+. +...+.++
T Consensus 84 wd~~~~---~-~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 84 VDLIGS---P-SFQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM 156 (342)
T ss_dssp ECSSSS---S-SEEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred EEeccC---C-ceEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence 999 76 2 3366778 999999999997 88999999999999999998 77777777 88899999
Q ss_pred EEcCCCCcEEEEEecCCcEEEEecCC-Cccc-eeeeccCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCCCC------c
Q psy6213 147 EFNPHSPYAFASVSENGTIQQWDVRR-PEKC-FYQFTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLSIK------P 217 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~dg~i~i~d~~~-~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~------~ 217 (330)
+|+|++ +++++.++.|++||+++ .... ......|...+.+++|+| +++++++++.||.+++|+++.. +
T Consensus 157 ~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 157 DTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp EECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred EecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 999886 88899999999999987 4432 334456888999999999 9999999999999999999876 3
Q ss_pred cccceecccc---------ceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC-CCCeEEEEEecCCCEE
Q psy6213 218 SLEYSINTIA---------SVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH-KDVVSGLAWRGDPQLF 287 (330)
Q Consensus 218 ~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 287 (330)
.......+.. .+.+++|+|++++++ +++ .||.|++||+.+++. +..+..| ..+|.+++ |++++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~--~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~~~--~~~~~l 307 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY-TAG--SDGIISCWNLQTRKK-IKNFAKFNEDSVVKIA--CSDNIL 307 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE-EEE--TTSCEEEEETTTTEE-EEECCCCSSSEEEEEE--ECSSEE
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEE-Eec--CCceEEEEcCccHhH-hhhhhcccCCCceEec--CCCCeE
Confidence 4444444433 899999999999754 554 599999999998876 7788888 99999999 999999
Q ss_pred EEeecCCe-Eeeee
Q psy6213 288 IASSRVSI-IPRAK 300 (330)
Q Consensus 288 ~s~~~dg~-i~iw~ 300 (330)
++++.||. .+.|+
T Consensus 308 ~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 308 CLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEECTHHHHCSS
T ss_pred EEEecCCccccccc
Confidence 99999998 65554
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=276.72 Aligned_cols=252 Identities=24% Similarity=0.392 Sum_probs=204.5
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|++++|+|+|++++++ |+.+++|+...+.......+. .+...|.+++|+| ++++|++|+.|+.|++|
T Consensus 59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-----~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iw 132 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-----GHENEVKSVAWAP-SGNLLATCSRDKSVWVW 132 (345)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC-----CCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc-----CCCCCceEEEEeC-CCCEEEEEECCCeEEEE
Confidence 589999999999999995555 999999999876533222221 2234479999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc--eeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE--STKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
|+...........+..|...|.+++|+| ++++|++++.|+.|++||.++++ ....+.+|...|.+++|+|+++ .|+
T Consensus 133 d~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~ 210 (345)
T 3fm0_A 133 EVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLA 210 (345)
T ss_dssp EECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred ECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEE
Confidence 9987544456777889999999999999 88999999999999999998875 3467888999999999999998 699
Q ss_pred EEecCCcEEEEecCCCcc--------------ceeeecc-CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc--
Q psy6213 158 SVSENGTIQQWDVRRPEK--------------CFYQFTA-HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE-- 220 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~--------------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-- 220 (330)
+++.|++|++||...+.. ++..+.+ |...|.+++|+|++..|++++.|+.|++|+........
T Consensus 211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~ 290 (345)
T 3fm0_A 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP 290 (345)
T ss_dssp EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee
Confidence 999999999999753221 1223333 88899999999999999999999999999987653211
Q ss_pred -------ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 221 -------YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 221 -------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
....|...|.+++|+|+++.++++++ .||.|++|++.+++.
T Consensus 291 ~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s--~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 291 TFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS--DDGEVAFWKYQRPEG 338 (345)
T ss_dssp CEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE--TTSCEEEEEECC---
T ss_pred eEEEEeeecccccCcEeEeEEeCCCceEEEEcC--CCCcEEEEEecCCCC
Confidence 11357789999999999875688887 799999999988765
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=278.98 Aligned_cols=246 Identities=19% Similarity=0.222 Sum_probs=205.2
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEec-CCCEEEEEecCCcEEEEEeec
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV-ESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~l~~~~~d~~i~i~d~~~ 129 (330)
...|.+++|+| ++++|++|+.|+.|++||+.+. .......+.+|...|.+++|+|. ++++|++|+.|++|++||+++
T Consensus 13 ~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~-~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 13 EDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNG-GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp -CCEEEEEECG-GGCEEEEEETTTEEEEEEEETT-EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCC-CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 34579999999 9999999999999999999762 12346678899999999999852 478999999999999999988
Q ss_pred Cc--eeeeeecCCCCeEEEEEcCC--CCcEEEEEecCCcEEEEecCCCcc--ceeeeccCCCCeEEEEEcCC--------
Q psy6213 130 QE--STKIFHSNTESVRDVEFNPH--SPYAFASVSENGTIQQWDVRRPEK--CFYQFTAHSGPIFACDWHPE-------- 195 (330)
Q Consensus 130 ~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~-------- 195 (330)
++ ....+.+|...|.+++|+|+ +. +|++++.|+.|++||++.... ....+..|...+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-----
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccc
Confidence 74 56667789999999999998 55 699999999999999987432 24566789999999999997
Q ss_pred ---------CCEEEEEecCCcEEEEeCCCCc---cccceeccccceEEEEEcCCC----CeEEEEeecccCCeEEEEEcc
Q psy6213 196 ---------HAWLATASRDKTIKVWDLSIKP---SLEYSINTIASVSRIKWRPQR----KFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 196 ---------~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~~~~~~~i~i~d~~ 259 (330)
+++|++++.|+.|++||++... .......|...|.+++|+|++ . ++++++ .|+.|++|+++
T Consensus 170 ~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~-~las~s--~D~~v~iw~~~ 246 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS-TIASCS--QDGRVFIWTCD 246 (316)
T ss_dssp -CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC-EEEEEE--TTCEEEEEECS
T ss_pred cccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc-eEEEEc--CCCeEEEEEcc
Confidence 4689999999999999997542 334455688899999999986 5 477777 79999999998
Q ss_pred CC---CccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 260 RP---YIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 260 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.. ......+..|...|.+++|+|++++|++++.||.|++|+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 247 DASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp STTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 63 22234567789999999999999999999999999999854
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=269.16 Aligned_cols=249 Identities=18% Similarity=0.295 Sum_probs=200.4
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCc--ceeeeeceeeccccccccceeeeeeccc-CCcEEEEEcCCCcE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDT--EFVETHNLRVGKNINLNFSCNDVAWSCI-EENHIATGATNGAV 76 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i 76 (330)
.|.+.|++++|+|+|+++++| |+.|+|||++.+ +....+..| ...|.+++|+|. ++++|++|+.||+|
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH-------~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH-------EGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC-------SSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc-------cCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 699999999999999995555 999999999753 334444333 334799999862 48899999999999
Q ss_pred EEEECCCCCCCceeEEecccccceeEEEEEecC-CCEEEEEecCCcEEEEEeecCce--eeeeecCCCCeEEEEEcCCC-
Q psy6213 77 VVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE-SNWLISGSQDGTMRLFDIRCQES--TKIFHSNTESVRDVEFNPHS- 152 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~- 152 (330)
++||+.+. .......+..|...|.+++|+|.. +.+|++++.|+.|++||++++.. ...+.+|...|.+++|+|++
T Consensus 80 ~iWd~~~~-~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 80 MIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp EEEEBSSS-CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred EEEEcCCC-ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence 99999862 124556677899999999999832 78999999999999999987632 45677899999999999973
Q ss_pred -----------CcEEEEEecCCcEEEEecCCCcc---ceeeeccCCCCeEEEEEcCCC---CEEEEEecCCcEEEEeCCC
Q psy6213 153 -----------PYAFASVSENGTIQQWDVRRPEK---CFYQFTAHSGPIFACDWHPEH---AWLATASRDKTIKVWDLSI 215 (330)
Q Consensus 153 -----------~~~~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~ 215 (330)
..+|++|+.|+.|++||+++... ....+.+|...|.+++|+|++ ++|++++.|++|++||++.
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 23799999999999999987432 456788999999999999984 8999999999999999987
Q ss_pred Ccc-----ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 216 KPS-----LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 216 ~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
... ......+...+.+++|+|++++ +++++ .|+.|++|+....
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-las~~--~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSG--GDNKVTLWKENLE 286 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCC-EEEEE--TTSCEEEEEECTT
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCE-EEEEc--CCCcEEEEEECCC
Confidence 431 1111345788999999999997 55555 5999999998643
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-40 Score=268.85 Aligned_cols=244 Identities=19% Similarity=0.313 Sum_probs=211.1
Q ss_pred ccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC--CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEE
Q psy6213 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR--SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126 (330)
Q Consensus 49 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d 126 (330)
.+...|.+++|+|.++++|++|+.|+.|++|++..... ..+...+.+|...|.+++|+| ++++|++|+.|++|++||
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd 93 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWD 93 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEE
Confidence 34455799999994558999999999999999864221 245677889999999999998 899999999999999999
Q ss_pred eecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC------CCEEE
Q psy6213 127 IRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE------HAWLA 200 (330)
Q Consensus 127 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~ 200 (330)
+++++.+..+.+|...|.+++|+|++. ++++++.|+.|++||++. ..+..+.+|...+.++.|+|. +..++
T Consensus 94 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 94 VATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred CCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence 999999999999999999999999998 699999999999999974 567788899999999999985 44899
Q ss_pred EEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEE
Q psy6213 201 TASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAW 280 (330)
Q Consensus 201 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 280 (330)
+++.|+.|++||+++.+.......|...|.+++|+|++++ +++++ .|+.|++||+.+++. +..+.. ...|.+++|
T Consensus 171 s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~-l~s~~--~dg~i~iwd~~~~~~-~~~~~~-~~~v~~~~~ 245 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL-IASAG--KDGEIMLWNLAAKKA-MYTLSA-QDEVFSLAF 245 (319)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSE-EEEEE--TTCEEEEEETTTTEE-EEEEEC-CSCEEEEEE
T ss_pred EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCE-EEEEe--CCCeEEEEECCCCcE-EEEecC-CCcEEEEEE
Confidence 9999999999999988766677788999999999999997 55555 699999999998865 666654 468999999
Q ss_pred ecCCCEEEEeecCCeEeeeecc
Q psy6213 281 RGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 281 ~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+|++.+|++++.+ .+++|+..
T Consensus 246 sp~~~~la~~~~~-~i~v~~~~ 266 (319)
T 3frx_A 246 SPNRYWLAAATAT-GIKVFSLD 266 (319)
T ss_dssp CSSSSEEEEEETT-EEEEEEET
T ss_pred cCCCCEEEEEcCC-CcEEEEeC
Confidence 9999999988755 48999754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-40 Score=268.02 Aligned_cols=242 Identities=23% Similarity=0.422 Sum_probs=211.8
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
+...|.+++|+| ++++|++|+.||.|++|+..+ .+....+.+|...|.+++|+| ++++|++++.|+.|++||+++
T Consensus 22 h~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 22 HTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD---GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS 96 (312)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT---CCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred cCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCC---cccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCC
Confidence 344579999999 999999999999999999987 677788899999999999998 899999999999999999999
Q ss_pred CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 130 QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 130 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
++.+..+..|...|.+++|+|+++ ++++++.||.|++||+++ .+....+..|..+|.+++|+|++++|++++.||.|+
T Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 97 GKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 999999999999999999999998 699999999999999998 567788889999999999999999999999999999
Q ss_pred EEeCCCCcccccee-ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEE--EEEe-cCCC
Q psy6213 210 VWDLSIKPSLEYSI-NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSG--LAWR-GDPQ 285 (330)
Q Consensus 210 i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~--~~~~-~~~~ 285 (330)
+||+++++...... .+..++..++|+|+++++++++ .|+.|++||+++++. +..+.+|...... ..++ +++.
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDYSKGKC-LKTYTGHKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE---TTTEEEEEETTTTEE-EEEECSSCCSSSCCCEEEECSSSC
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc---CCCeEEEEECCCCcE-EEEEEecCCceEEEEEEEEeCCCc
Confidence 99999886544433 3567899999999999855554 599999999998865 7777777654332 2343 6889
Q ss_pred EEEEeecCCeEeeeecc
Q psy6213 286 LFIASSRVSIIPRAKNI 302 (330)
Q Consensus 286 ~l~s~~~dg~i~iw~~~ 302 (330)
+|++++.||.|++|+..
T Consensus 251 ~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 251 WIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp EEEECCTTSCEEEEETT
T ss_pred EEEEECCCCEEEEEECC
Confidence 99999999999999854
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=279.96 Aligned_cols=290 Identities=12% Similarity=0.098 Sum_probs=230.1
Q ss_pred CCCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcc---eeeeeceeec-------------------------------
Q psy6213 1 MAYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTE---FVETHNLRVG------------------------------- 45 (330)
Q Consensus 1 ~~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~---~~~~~~~~~~------------------------------- 45 (330)
|.+..++.+++|+|+|++++++ ++.|++||+.+++ ....+..+..
T Consensus 1 ~~~~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 1 MSVIHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp -CEECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred CCccccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 6777899999999999997777 9999999999988 5444432211
Q ss_pred ----------------cccccccceeeeeecccCCcEE-EEEcCCCcEEEEECC--CCCCCceeEEec--ccccceeEEE
Q psy6213 46 ----------------KNINLNFSCNDVAWSCIEENHI-ATGATNGAVVVWNLG--QISRSKQERVFN--DHKRTVNKVS 104 (330)
Q Consensus 46 ----------------~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~~~~--~~~~~i~~i~ 104 (330)
....+...|.+++|+| ++++| ++++.||.|++||+. + ......+. .|...|.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTS---KNVLKLRKRFCFSKRPNAIS 156 (450)
T ss_dssp -------------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSS---SSCEEEEEEEECSSCEEEEE
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCC---CceeeeeecccCCCCceEEE
Confidence 0001222589999999 88885 899999999999998 5 45555554 5678999999
Q ss_pred EEecCCCEEEEEecCCcEEEEEeecCceee----eeecCCCCeEEEEEcCC---CCcEEEEEecCCcEEEEecCCCccce
Q psy6213 105 FHYVESNWLISGSQDGTMRLFDIRCQESTK----IFHSNTESVRDVEFNPH---SPYAFASVSENGTIQQWDVRRPEKCF 177 (330)
Q Consensus 105 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~~~~~~~dg~i~i~d~~~~~~~~ 177 (330)
|+| ++.+|++|+.+|.+++|++.+++... .+.+|...|.+++|+|+ ++ +|++++.|+.|++||+++ ...+
T Consensus 157 ~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~-~~~~ 233 (450)
T 2vdu_B 157 IAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQ-CFIV 233 (450)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESC-TTCE
T ss_pred EcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCC-Ccee
Confidence 999 89999999999999999998877554 77789999999999999 76 699999999999999997 4445
Q ss_pred ee-eccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee-------------------------ccccceEE
Q psy6213 178 YQ-FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI-------------------------NTIASVSR 231 (330)
Q Consensus 178 ~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------------~~~~~v~~ 231 (330)
.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++...... .....+..
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp EEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred eeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 44 66899999999999 99999999999999999999886433322 22356899
Q ss_pred EEEcCCCCeEEEEeecccCCeEEEEEc--cCCC--ccceEeecCCCCeEEEEEecCCCEEEEeec------CCeEeeeec
Q psy6213 232 IKWRPQRKFHLASCSLVVDSSVNVWDI--RRPY--IPLASFTEHKDVVSGLAWRGDPQLFIASSR------VSIIPRAKN 301 (330)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~i~i~d~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~iw~~ 301 (330)
++|+|+++++++++. .++.|++|++ .... ..+..+..| ..|.+++|+|++.++++++. +..|.+|..
T Consensus 313 i~~~~~~~~l~~~~~--~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVE--ATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp EEECSSSSEEEEEET--TCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEE
T ss_pred EEEeCCCCEEEEEEC--CCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEE
Confidence 999999999888874 4999999999 4431 335667777 88999999996544444443 455788864
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=281.21 Aligned_cols=262 Identities=17% Similarity=0.292 Sum_probs=218.0
Q ss_pred CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEE
Q psy6213 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKV 103 (330)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i 103 (330)
..+..|+.........+..|. ..|++++|+| ++++|++|+.||+|++||..+ .+....+..|...|.++
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~-------~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~---~~~~~~~~~h~~~v~~~ 114 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHS-------GKVYSLDWTP-EKNWIVSASQDGRLIVWNALT---SQKTHAIKLHCPWVMEC 114 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCS-------SCEEEEEECT-TSSCEEEEETTSEEEEEETTT---TEEEEEEECCCTTCCCC
T ss_pred ccccccccceeEEeecccccc-------cEEEEEEEcC-CCCEEEEEeCCCeEEEEECCC---CccceEEecCCCCEEEE
Confidence 334456655555555554443 3479999999 999999999999999999988 77888889999999999
Q ss_pred EEEecCCCEEEEEecCCcEEEEEeecCc-------eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc
Q psy6213 104 SFHYVESNWLISGSQDGTMRLFDIRCQE-------STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC 176 (330)
Q Consensus 104 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 176 (330)
+|+| ++++|++|+.|+.+++||+.+.. ....+.+|...+.++.|.|++...+++++.|++|++||+++ +..
T Consensus 115 ~~s~-~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~-~~~ 192 (380)
T 3iz6_a 115 AFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT-GQR 192 (380)
T ss_dssp EECT-TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT-CCE
T ss_pred EECC-CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC-CcE
Confidence 9999 89999999999999999987532 34567789999999999998766799999999999999998 444
Q ss_pred eeee-----ccCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCCCC-ccccceeccccceEEEEEcCCCCeEEEEeeccc
Q psy6213 177 FYQF-----TAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLSIK-PSLEYSINTIASVSRIKWRPQRKFHLASCSLVV 249 (330)
Q Consensus 177 ~~~~-----~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 249 (330)
+..+ .+|...|.+++|+| ++++|++|+.|+.|++||++.. +.......|...|.+++|+|++++ +++++ .
T Consensus 193 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s--~ 269 (380)
T 3iz6_a 193 ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGS--D 269 (380)
T ss_dssp EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEEC--S
T ss_pred EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEc--C
Confidence 5444 57889999999987 8899999999999999999854 445566678899999999999997 55565 6
Q ss_pred CCeEEEEEccCCCccceEeecCC-------CCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 250 DSSVNVWDIRRPYIPLASFTEHK-------DVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 250 ~~~i~i~d~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
|+.|++||++++.. +..+..+. ..|.+++|+|+|++|++|+.||.|++|+..
T Consensus 270 D~~i~lwd~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQ-LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp SSCEEEEETTTTEE-EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred CCeEEEEECCCCcE-EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 99999999998865 55554432 248999999999999999999999999853
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=268.28 Aligned_cols=241 Identities=20% Similarity=0.301 Sum_probs=195.3
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEe-cc-cccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVF-ND-HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~-~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
..|.+++|+| + +|++|+.|+.|++||+.... ......+ .. |...|.+++|+| ++++|++|+.|++|++||++.
T Consensus 15 ~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~-~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 15 EKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDD-FTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp SCEEEEEEET-T--EEEEEESSSCEEEEECSSSC-CEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC--
T ss_pred CceeeeccCC-C--EEEEEcCCCEEEEEEecCCC-eEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEccc
Confidence 3479999998 4 99999999999999997621 2344445 34 999999999999 899999999999999999853
Q ss_pred -------CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCc---cceeeeccCCCCeEEEEEcCCCCEE
Q psy6213 130 -------QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE---KCFYQFTAHSGPIFACDWHPEHAWL 199 (330)
Q Consensus 130 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l 199 (330)
.+.+..+.+|...|.+++|+|+++ +|++++.|+.|++||++... +++..+.+|...|.+++|+|++.+|
T Consensus 90 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 168 (330)
T 2hes_X 90 SADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALL 168 (330)
T ss_dssp -----CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEE
T ss_pred CcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEE
Confidence 345677888999999999999998 69999999999999995422 4566788999999999999999999
Q ss_pred EEEecCCcEEEEeCCCC--ccccceeccccceEEEEEcCC--CCeEEEEeecccCCeEEEEEccCCC-------ccceEe
Q psy6213 200 ATASRDKTIKVWDLSIK--PSLEYSINTIASVSRIKWRPQ--RKFHLASCSLVVDSSVNVWDIRRPY-------IPLASF 268 (330)
Q Consensus 200 ~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~i~i~d~~~~~-------~~~~~~ 268 (330)
++++.|+.|++||.... +.......|...|.+++|+|+ +.. +++++ .|+.|++||++.+. .....+
T Consensus 169 ~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-l~s~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~ 245 (330)
T 2hes_X 169 ASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR-LCSGS--DDSTVRVWKYMGDDEDDQQEWVCEAIL 245 (330)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE-EEEEE--TTSCEEEEEEEEECTTSCEEEEEEEEC
T ss_pred EEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE-EEEEe--CCCeEEEEEecCCCccccceeEEeeec
Confidence 99999999999998765 345556678899999999998 554 66666 69999999997542 113334
Q ss_pred ec-CCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 269 TE-HKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 269 ~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.. |...|.+++|++++ +|++++.||.|++|+..
T Consensus 246 ~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 246 PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV 279 (330)
T ss_dssp CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence 44 88999999999765 89999999999999854
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=269.76 Aligned_cols=243 Identities=17% Similarity=0.269 Sum_probs=212.3
Q ss_pred ccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee
Q psy6213 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 49 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~ 128 (330)
.+...|.+++|+| ++.+|++|+.||.|++||..+ .+....+..|...|.+++|+| ++.++++|+.|+.+++|++.
T Consensus 62 gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~---~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 62 GHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFT---TNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT---CCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECC
T ss_pred CCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCC---CCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEe
Confidence 3445589999999 999999999999999999887 667777788899999999999 89999999999999999986
Q ss_pred cC------ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC--CCCEEE
Q psy6213 129 CQ------ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP--EHAWLA 200 (330)
Q Consensus 129 ~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~ 200 (330)
.. .....+..|...|.+++|+|++. .+++++.|++|++||+++ ++.+..+.+|...|.+++|+| ++++|+
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVES-GQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred ccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCC-CeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 43 33556778999999999999998 599999999999999998 677888999999999999988 578999
Q ss_pred EEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC--CCCeEEE
Q psy6213 201 TASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH--KDVVSGL 278 (330)
Q Consensus 201 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~~v~~~ 278 (330)
+++.||.|++||+++++.......|...|.+++|+|++.+ +++++ .|+.|++||++.... +..+..+ ...+.++
T Consensus 215 sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s--~D~~v~lwd~~~~~~-~~~~~~~~~~~~~~~~ 290 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA-FASGS--DDATCRLYDLRADRE-VAIYSKESIIFGASSV 290 (354)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTTEE-EEEECCTTCCSCEEEE
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCE-EEEEe--CCCeEEEEECCCCcE-EEEEcCCCcccceeEE
Confidence 9999999999999998777777778999999999999997 55666 699999999998754 4444433 3578999
Q ss_pred EEecCCCEEEEeecCCeEeeeecc
Q psy6213 279 AWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 279 ~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+|+|++++|++++.|+.|++|+..
T Consensus 291 ~~s~~g~~l~~g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 291 DFSLSGRLLFAGYNDYTINVWDVL 314 (354)
T ss_dssp EECTTSSEEEEEETTSCEEEEETT
T ss_pred EEeCCCCEEEEEECCCcEEEEECC
Confidence 999999999999999999999864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-40 Score=313.73 Aligned_cols=283 Identities=19% Similarity=0.304 Sum_probs=245.7
Q ss_pred CCcccceEEEEeeCCCeeec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|++++|+|+|+++++ + ||.|++||+.+++....+..|. ..|.+++|+| ++++|++++.||.|++|
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~-------~~v~~~~~s~-~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE-------DEVLCCAFSS-DDSYIATCSADKKVKIW 684 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-------SCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCC-------CCEEEEEEec-CCCEEEEEeCCCeEEEE
Confidence 58999999999999999555 4 9999999999998777665443 3469999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEec-CCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYV-ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
|+.+ ++....+.+|...|.+++|+|. +..++++|+.|+.|++||+++++....+.+|...|.+++|+|+++ .+++
T Consensus 685 d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s 760 (1249)
T 3sfz_A 685 DSAT---GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLAS 760 (1249)
T ss_dssp ETTT---CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT-EEEE
T ss_pred ECCC---CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC-EEEE
Confidence 9988 7888889999999999999984 345889999999999999999999999999999999999999998 6999
Q ss_pred EecCCcEEEEecCCCccceeeec-------------cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee-c
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFT-------------AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI-N 224 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~ 224 (330)
++.||.|++||+++. .....+. .+...+.+++|+|+|+.+++++ ++.+.+||+.++....... .
T Consensus 761 ~s~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~ 838 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSA-NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG 838 (1249)
T ss_dssp EESSSEEEEEEGGGT-EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS
T ss_pred EECCCeEEEEeCCCC-cccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC
Confidence 999999999999873 3333222 1234788999999999999887 6899999999886654443 6
Q ss_pred cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 225 TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 225 ~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+...+.+++|+|+++.+++++ .++.|++||+.++.. ...+.+|...|.+++|+|+++.|++++.||.|++|+..
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~---~dg~v~vwd~~~~~~-~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIAL---SQYCVELWNIDSRLK-VADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEEC---SSSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCceEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCce-eeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 788999999999999755554 599999999998865 78889999999999999999999999999999999853
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=280.33 Aligned_cols=286 Identities=16% Similarity=0.213 Sum_probs=231.5
Q ss_pred ceEEEEeeCCCe-eec-C-CCeEEEEEcCCccee-eeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 7 VHKHGLKADNGL-AQP-S-RNVFKIFLIKDTEFV-ETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~-g-d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
...++++|+... +++ + ||.|+||++...... ... .....+...|.+++|+|.++++|++|+.||.|++||+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~----~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNV----PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTC----CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCC----ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 456888888776 443 4 999999999664321 111 11223345589999999778999999999999999998
Q ss_pred CCCCC----ceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee--ecCCCCeEEEEEcCCCCcEE
Q psy6213 83 QISRS----KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF--HSNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 83 ~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~ 156 (330)
+.... .....+.+|...|.+++|+|++.++|++++.|+.|++||+++++.+..+ ..|...|.+++|+|+++ .|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA-LI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS-CE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC-EE
Confidence 73211 5667788999999999999943479999999999999999999999888 78999999999999998 59
Q ss_pred EEEecCCcEEEEecCCCccceeee-ccCCCC-eEEEEEcCCCCEEEEE---ecCCcEEEEeCCCCcccc--ceeccccce
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQF-TAHSGP-IFACDWHPEHAWLATA---SRDKTIKVWDLSIKPSLE--YSINTIASV 229 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~--~~~~~~~~v 229 (330)
++++.||.|++||+++ .+.+..+ ..|.+. +.++.|+|++++|+++ +.|+.|++||+++..... ....+...+
T Consensus 192 ~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRK-GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp EEEETTSEEEEEETTT-TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred EEEecCCcEEEEeCCC-CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 9999999999999998 5566666 677775 8999999999999999 799999999999875422 233467789
Q ss_pred EEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec--CCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE--HKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+++|+|++++++++++ .|+.|++||+.+++..+..+.. |...|.+++|+|++.++++ .++.+++|+..
T Consensus 271 ~~~~~s~~~~~l~~~g~--~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGK--GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp EEEEEETTTTEEEEEET--TCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred eEEEEcCCCCEEEEEEc--CCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence 99999999998777776 6999999999988743444444 4589999999999988764 57799999854
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=276.67 Aligned_cols=275 Identities=20% Similarity=0.334 Sum_probs=230.1
Q ss_pred CCcccc-eEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPV-HKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v-~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
.|.+.| .++.+ ++++ ++++ ||.|++||+.+++....+..|. ..|.+++|+| ++ .+++|+.||.|++
T Consensus 119 ~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~-------~~V~~l~~~~-~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 119 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD-------GGVWALKYAH-GG-ILVSGSTDRTVRV 187 (464)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCS-------SCEEEEEECS-TT-EEEEEETTSCEEE
T ss_pred CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC-------cCEEEEEEcC-CC-EEEEEeCCCCEEE
Confidence 477775 55555 5677 4445 9999999999998777665443 3469999998 55 9999999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEe-cCCCEEEEEecCCcEEEEEeecCce-----------------------ee
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHY-VESNWLISGSQDGTMRLFDIRCQES-----------------------TK 134 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~-----------------------~~ 134 (330)
||+.+ .+....+.+|...|.+++|++ .++.++++|+.|+.|++||+++++. ..
T Consensus 188 wd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (464)
T 3v7d_B 188 WDIKK---GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 264 (464)
T ss_dssp EETTT---TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred EECCC---CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence 99988 778888999999999999995 2668999999999999999987653 34
Q ss_pred eeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCC
Q psy6213 135 IFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214 (330)
Q Consensus 135 ~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 214 (330)
.+.+|...+.++ +++++ .+++++.||.|++||+++ .+.+..+.+|...|.+++|+|+++++++++.||.|++||++
T Consensus 265 ~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 265 VLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQ-MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp EECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred EccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCC-CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 566778888877 46666 699999999999999997 67788889999999999999999999999999999999999
Q ss_pred CCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 215 IKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
+++.......|...+.+++|++ .+ +++++ .||.|++||++++.. .... .|...+..++|+|++++|++++ ||
T Consensus 341 ~~~~~~~~~~h~~~v~~~~~~~--~~-l~s~s--~dg~v~vwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg 412 (464)
T 3v7d_B 341 NGELMYTLQGHTALVGLLRLSD--KF-LVSAA--ADGSIRGWDANDYSR-KFSY-HHTNLSAITTFYVSDNILVSGS-EN 412 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECS--SE-EEEEE--TTSEEEEEETTTCCE-EEEE-ECTTCCCEEEEEECSSEEEEEE-TT
T ss_pred CCcEEEEEeCCCCcEEEEEEcC--CE-EEEEe--CCCcEEEEECCCCce-eeee-cCCCCccEEEEEeCCCEEEEec-CC
Confidence 9877777778899999999984 44 55555 699999999998764 2222 3667788899999999999988 99
Q ss_pred eEeeeecc
Q psy6213 295 IIPRAKNI 302 (330)
Q Consensus 295 ~i~iw~~~ 302 (330)
.|++|+..
T Consensus 413 ~i~iwd~~ 420 (464)
T 3v7d_B 413 QFNIYNLR 420 (464)
T ss_dssp EEEEEETT
T ss_pred eEEEEECC
Confidence 99999854
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=277.08 Aligned_cols=257 Identities=23% Similarity=0.353 Sum_probs=215.3
Q ss_pred cccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC-------CCCceeEEecccccceeEEEEEecCCCEEEEEecCC
Q psy6213 48 INLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI-------SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG 120 (330)
Q Consensus 48 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~ 120 (330)
..+...|++++|+|+++.+|++++.+|.|++|++... ........+..|...+.+++|+|.+..+|++|+.||
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 3445568999999944789999999999999999751 224566778899999999999994444999999999
Q ss_pred cEEEEEeecCce-------eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCc--cceeeeccCCCCeEEEE
Q psy6213 121 TMRLFDIRCQES-------TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE--KCFYQFTAHSGPIFACD 191 (330)
Q Consensus 121 ~i~i~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~ 191 (330)
.|++||+.++.. ...+..|...|.+++|+|++..+|++++.||.|++||+++.. .....+..|...|++++
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 284 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence 999999987322 455667899999999999666689999999999999999753 56677788999999999
Q ss_pred EcCCCC-EEEEEecCCcEEEEeCCCCc-cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC-------
Q psy6213 192 WHPEHA-WLATASRDKTIKVWDLSIKP-SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY------- 262 (330)
Q Consensus 192 ~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~------- 262 (330)
|+|++. ++++++.||.|++||++... .......|...|.+++|+|++++++++++ .|+.|++||+....
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~ 362 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTED 362 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE--TTSCCEEEEGGGTTCCCCHHH
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCccccCccc
Confidence 999887 78999999999999999853 35555568899999999999987787777 79999999998722
Q ss_pred ------ccceEeecCCCCeEEEEEecCCC-EEEEeecCCeEeeeeccceee
Q psy6213 263 ------IPLASFTEHKDVVSGLAWRGDPQ-LFIASSRVSIIPRAKNIKIFI 306 (330)
Q Consensus 263 ------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iw~~~~~~~ 306 (330)
..+....+|...|.+++|+|+++ +|++++.||.|++|+..+...
T Consensus 363 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 363 AEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413 (430)
T ss_dssp HHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred cccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence 33667778999999999999999 999999999999998765443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=269.98 Aligned_cols=248 Identities=20% Similarity=0.262 Sum_probs=197.4
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCccee--eeeceeeccccccccceeeeeeccc-CCcEEEEEcCCCcE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFV--ETHNLRVGKNINLNFSCNDVAWSCI-EENHIATGATNGAV 76 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i 76 (330)
.|.++|++++|+|+|+++++| |+.|+|||+.+++.. ..+.. +...|.+++|+|. ++++|++|+.|++|
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-------H~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG-------HEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC-------CSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-------CCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 599999999999999995555 999999999876532 22322 2344799999862 48999999999999
Q ss_pred EEEECCCCCCCceeEEecccccceeEEEEEecC-CCEEEEEecCCcEEEEEeecCce---eeeeecCCCCeEEEEEcCCC
Q psy6213 77 VVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE-SNWLISGSQDGTMRLFDIRCQES---TKIFHSNTESVRDVEFNPHS 152 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~ 152 (330)
++||+++. .......+.+|...|.+++|+|++ +.+|++|+.|+.|++||++.+.. ...+..|...+.+++|+|+.
T Consensus 84 ~iWd~~~~-~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 84 IIWREENG-TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp EEECCSSS-CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred EEEECCCC-cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence 99999862 124556778899999999999932 78999999999999999987632 34556788899999999973
Q ss_pred ----------------CcEEEEEecCCcEEEEecCCCc--cceeeeccCCCCeEEEEEcCCC----CEEEEEecCCcEEE
Q psy6213 153 ----------------PYAFASVSENGTIQQWDVRRPE--KCFYQFTAHSGPIFACDWHPEH----AWLATASRDKTIKV 210 (330)
Q Consensus 153 ----------------~~~~~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i 210 (330)
..+|++++.|+.|++||++... .+...+.+|...|.+++|+|++ ++|++++.|++|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 1269999999999999997532 3566788999999999999986 89999999999999
Q ss_pred EeCCCCc----cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 211 WDLSIKP----SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 211 ~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
||++... .......+...|.+++|+|++++ +++++ .|+.|++|+...
T Consensus 243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~-las~~--~D~~v~lw~~~~ 293 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI-LAVSG--GDNKVTLWKESV 293 (316)
T ss_dssp EECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC-EEEEE--SSSCEEEEEECT
T ss_pred EEccCccccchhhhhhhcCCCcEEEEEEcCCCCE-EEEEc--CCCeEEEEEECC
Confidence 9997631 12233456789999999999997 45555 599999999763
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=269.78 Aligned_cols=295 Identities=14% Similarity=0.144 Sum_probs=210.5
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc-CCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI-EENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i 78 (330)
.|.++|++++|+|++++++++ ||.|++||+.++....... .....+...|.+++|+|. ++++|++|+.||.|++
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELS---DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEE---EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceec---ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 699999999999999995554 9999999998764221111 011123345799999984 4899999999999999
Q ss_pred EECCCCCC------CceeEEecccccceeEEEEEecC--CCEEEEEecCCcEEEEEeecCceeeeee-------------
Q psy6213 79 WNLGQISR------SKQERVFNDHKRTVNKVSFHYVE--SNWLISGSQDGTMRLFDIRCQESTKIFH------------- 137 (330)
Q Consensus 79 w~~~~~~~------~~~~~~~~~~~~~i~~i~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~------------- 137 (330)
||+..... .+....+..|...|.+++|+| + +.++++++.||.|++||+++++.+..+.
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99987321 155777889999999999998 6 8999999999999999999887654443
Q ss_pred cCCCCeEEEEEcCC---CCcEEEEEecCCcEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCC----CEEEEEecCCcEE
Q psy6213 138 SNTESVRDVEFNPH---SPYAFASVSENGTIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEH----AWLATASRDKTIK 209 (330)
Q Consensus 138 ~~~~~v~~~~~~~~---~~~~~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~ 209 (330)
.+...+.+++|+|+ +. .+++++.++.+.+|+...... ....+.+|...|.+++|+|++ ++|++++.||.|+
T Consensus 165 ~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CcccceeEEEeccCCCCCc-EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 46778999999997 65 799999999998887766322 366778899999999999998 8999999999999
Q ss_pred EEeCCCCccccceeccccceEEEEEcCCCCeEEEEee-cccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEE
Q psy6213 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCS-LVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFI 288 (330)
Q Consensus 210 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 288 (330)
+||++.....................+.......... ......+.+|+...... +..+.+|...|++++|+|++++|+
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL-LSEHDDHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEE-EEEECTTSSCEEEEEECSSSCCEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE-EEEEecccccEEEEEEcCCCCEEE
Confidence 9999877544443333334444444444332111111 00234445555444433 777889999999999999999999
Q ss_pred EeecCCeEeeeecc
Q psy6213 289 ASSRVSIIPRAKNI 302 (330)
Q Consensus 289 s~~~dg~i~iw~~~ 302 (330)
+++.||.|++|+..
T Consensus 323 s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 323 SAGDDGKVRLWKAT 336 (351)
T ss_dssp EEETTSCEEEEEEC
T ss_pred EecCCCcEEEEecC
Confidence 99999999999865
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=287.71 Aligned_cols=284 Identities=14% Similarity=0.183 Sum_probs=243.1
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCc----ceeeeeceeeccccccccc-eeeeeeccc-CCcEEEEEcCCC
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDT----EFVETHNLRVGKNINLNFS-CNDVAWSCI-EENHIATGATNG 74 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~-v~~~~~~~~-~~~~l~~~~~dg 74 (330)
.|.+.|.+++|+|+|++++++ ++.|++|+++++ +....+..| ... |.+++|+|. ++++|++++.||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h-------~~~~v~~~~~sp~~~~~~l~s~~~dg 88 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH-------GSSVVTTVKFSPIKGSQYLCSGDESG 88 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTT-------TTSCEEEEEECSSTTCCEEEEEETTS
T ss_pred CccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecC-------CCceEEEEEECcCCCCCEEEEecCCC
Confidence 588999999999999998778 999999999987 655555433 334 699999984 678999999999
Q ss_pred cEEEEECCCCC-----CCceeEEecccccceeEEEEEecCCCEEEEEecC----CcEEEEEeecCceeeeeecCCCCeEE
Q psy6213 75 AVVVWNLGQIS-----RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD----GTMRLFDIRCQESTKIFHSNTESVRD 145 (330)
Q Consensus 75 ~i~iw~~~~~~-----~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~v~~ 145 (330)
.|++||+.+.. .......+..|...|.+++|+| ++++|++++.+ +.|++|| .++.+..+..|...|.+
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINA 165 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEE
Confidence 99999996410 1366677788999999999998 89999999987 6888888 57788888999999999
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCC---CeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCccccc
Q psy6213 146 VEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSG---PIFACDWHPE-HAWLATASRDKTIKVWDLSIKPSLEY 221 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~ 221 (330)
++|+|++++++++++.|+.|++||+++ .+....+..|.. .|.+++|+|+ +++|++++.||.|++||+++++....
T Consensus 166 ~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 244 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244 (615)
T ss_dssp EEECSSSSCEEEEEETTTEEEEEETTT-BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred EEECCCCCcEEEEEeCCCcEEEEeCCC-cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence 999999987799999999999999987 677788888998 9999999999 99999999999999999998866555
Q ss_pred e-e---ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC----CCCeEEEEEecCCCEEEEeecC
Q psy6213 222 S-I---NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH----KDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 222 ~-~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d 293 (330)
. . .+...+.+++|+ ++++++ +++ .|+.|++||+++++. +..+..+ ...+.++.|. +++++++++.|
T Consensus 245 ~~~~~~~~~~~v~~~~~~-~~~~l~-~~~--~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 318 (615)
T 1pgu_A 245 IEDDQEPVQGGIFALSWL-DSQKFA-TVG--ADATIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLD 318 (615)
T ss_dssp CCBTTBCCCSCEEEEEES-SSSEEE-EEE--TTSEEEEEETTTTEE-EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETT
T ss_pred ecccccccCCceEEEEEc-CCCEEE-EEc--CCCcEEEEECCCCcE-EEEEcCCCCcccCceeEEEeC-CCCeEEEEECC
Confidence 5 4 788999999999 888744 444 599999999998765 6666665 3678888886 89999999999
Q ss_pred CeEeeeecc
Q psy6213 294 SIIPRAKNI 302 (330)
Q Consensus 294 g~i~iw~~~ 302 (330)
|.|++|+..
T Consensus 319 g~i~~~d~~ 327 (615)
T 1pgu_A 319 GTLNFYELG 327 (615)
T ss_dssp SCEEEEETT
T ss_pred CCEEEEECC
Confidence 999999865
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=276.17 Aligned_cols=272 Identities=20% Similarity=0.304 Sum_probs=229.8
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|...|.++++ +++++++| ||.|++||+.+++....+..|.. .|.+++| ++++|++|+.||.|++|
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~-------~v~~l~~---~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-------SVLCLQY---DERVIITGSSDSTVRVW 198 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSS-------CEEEEEC---CSSEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCC-------cEEEEEE---CCCEEEEEcCCCeEEEE
Confidence 35677888877 78885554 99999999999887776655433 3688888 56899999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee---eeeecCCCCeEEEEEcCCCCcEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST---KIFHSNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~ 156 (330)
|+.+ .+....+..|...|.+++|+ ++++++|+.||.|++||+++++.. ..+.+|...|.+++| +++ .+
T Consensus 199 d~~~---~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l 269 (435)
T 1p22_A 199 DVNT---GEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YI 269 (435)
T ss_dssp ESSS---CCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EE
T ss_pred ECCC---CcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EE
Confidence 9988 67888899999999999986 459999999999999999987765 667789999999999 455 69
Q ss_pred EEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcC
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRP 236 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 236 (330)
++++.||.|++||+++ .+.+..+..|...|.++.++ ++++++|+.||.|++||+++++.......|...+.+++|
T Consensus 270 ~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 270 VSASGDRTIKVWNTST-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-- 344 (435)
T ss_dssp EEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--
T ss_pred EEEeCCCeEEEEECCc-CcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--
Confidence 9999999999999998 67788889999999999995 689999999999999999998777777778899999999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCc--------cceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccce
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYI--------PLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 304 (330)
++.+ +++++ .||.|++||++++.. .+..+.+|.+.|.+++| ++.+|++++.||.|++|+....
T Consensus 345 ~~~~-l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 345 DNKR-IVSGA--YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp CSSE-EEEEE--TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred cCCE-EEEEe--CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 5665 55555 699999999976541 36778899999999999 7889999999999999986543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=284.63 Aligned_cols=284 Identities=14% Similarity=0.246 Sum_probs=223.9
Q ss_pred CCcccceEEEEeeCCC-e-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccC-CcEEEEEcCCCcEE
Q psy6213 2 AYLSPVHKHGLKADNG-L-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE-ENHIATGATNGAVV 77 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~-~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~ 77 (330)
.|.+.|++++|+|+++ . ++++ |+.|++||+.+++....+..+... ...|.+++|+| + +++|++++.||.|+
T Consensus 158 ~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~-~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 158 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ----GSFVRDVEFSP-DSGEFVITVGSDRKIS 232 (615)
T ss_dssp SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT----TCCEEEEEECS-TTCCEEEEEETTCCEE
T ss_pred cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC----CceEEEEEECC-CCCCEEEEEeCCCeEE
Confidence 5889999999999998 4 4444 999999999998877666544330 01469999999 7 99999999999999
Q ss_pred EEECCCCCCCceeEEe-c---ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee----------------
Q psy6213 78 VWNLGQISRSKQERVF-N---DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH---------------- 137 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~-~---~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------------- 137 (330)
+||+.+ .+....+ . .|...|.+++|+ ++.+|++++.|+.|++||+++++.+..+.
T Consensus 233 vwd~~~---~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (615)
T 1pgu_A 233 CFDGKS---GEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 307 (615)
T ss_dssp EEETTT---CCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE
T ss_pred EEECCC---CCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC
Confidence 999987 6777777 5 899999999998 78999999999999999987665433332
Q ss_pred -----------------------------cCCCCeEE---------------------------------EEEcCCCCcE
Q psy6213 138 -----------------------------SNTESVRD---------------------------------VEFNPHSPYA 155 (330)
Q Consensus 138 -----------------------------~~~~~v~~---------------------------------~~~~~~~~~~ 155 (330)
.|...|.+ ++| ++++ .
T Consensus 308 ~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~-~ 385 (615)
T 1pgu_A 308 GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQ-E 385 (615)
T ss_dssp ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTT-C
T ss_pred CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCc-E
Confidence 23333333 333 1122 2
Q ss_pred EEEEec--------------------------------------------------------------------------
Q psy6213 156 FASVSE-------------------------------------------------------------------------- 161 (330)
Q Consensus 156 ~~~~~~-------------------------------------------------------------------------- 161 (330)
+++++.
T Consensus 386 l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (615)
T 1pgu_A 386 YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEE 465 (615)
T ss_dssp CEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETT
T ss_pred EEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecC
Confidence 334443
Q ss_pred CCcEEEEecCCCccce-eeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec-cccceEEEEEcC---
Q psy6213 162 NGTIQQWDVRRPEKCF-YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN-TIASVSRIKWRP--- 236 (330)
Q Consensus 162 dg~i~i~d~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~--- 236 (330)
|+.|++||+.+. ... ..+..|...|.+++|+|++++|++++.||.|++||+.+++....... |...|++++|+|
T Consensus 466 d~~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 544 (615)
T 1pgu_A 466 GNTIQVFKLSDL-EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544 (615)
T ss_dssp TSCEEEEETTEE-EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred CCeEEEEECCCc-cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccc
Confidence 455555555431 221 55667899999999999999999999999999999998876666555 889999999999
Q ss_pred -------CCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 237 -------QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 237 -------~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
++++ +++++ .|+.|++||+.++..++..+.+|...|.+++|+|+++ |++++.||.|++|+..
T Consensus 545 ~~~~~~~~~~~-l~~~~--~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 545 GANEEEIEEDL-VATGS--LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp -----CCSCCE-EEEEE--TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred cccccccCCCE-EEEEc--CCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 9997 55555 6999999999988555888899999999999999999 9999999999999753
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=269.38 Aligned_cols=241 Identities=20% Similarity=0.344 Sum_probs=202.3
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccc------------------cceeEEEEEecCCC
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHK------------------RTVNKVSFHYVESN 111 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~------------------~~i~~i~~~~~~~~ 111 (330)
+...|.+++|+| ++++|++|+ ++.+++|++.+ ++....+..+. ..|.+++|+| +++
T Consensus 63 h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~---g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~ 136 (393)
T 1erj_A 63 HTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSD---GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGK 136 (393)
T ss_dssp CSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTT---CCEEEEECC-----------------CCCCBEEEEEECT-TSS
T ss_pred CCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecC---CCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCC
Confidence 445579999999 999999987 67899999987 55555554433 2489999998 899
Q ss_pred EEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEE
Q psy6213 112 WLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACD 191 (330)
Q Consensus 112 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~ 191 (330)
+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++ .+++++.|++|++||+++ ++....+. +...+.+++
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~-~~~~~~~~-~~~~v~~~~ 213 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRT-GQCSLTLS-IEDGVTTVA 213 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTT-TEEEEEEE-CSSCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCC-CeeEEEEE-cCCCcEEEE
Confidence 999999999999999999999999999999999999999998 589999999999999997 45555554 567899999
Q ss_pred EcC-CCCEEEEEecCCcEEEEeCCCCccccce-------eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC-
Q psy6213 192 WHP-EHAWLATASRDKTIKVWDLSIKPSLEYS-------INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY- 262 (330)
Q Consensus 192 ~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~- 262 (330)
|+| ++++|++++.||.|++||++++...... ..|...|.+++|+|++++ +++++ .|+.|++||+++..
T Consensus 214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s--~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGS--LDRSVKLWNLQNANN 290 (393)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-EEEEE--TTSEEEEEEC-----
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE-EEEEe--CCCEEEEEECCCCCC
Confidence 999 8999999999999999999887543332 357789999999999997 55555 69999999997642
Q ss_pred ----------ccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 263 ----------IPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 263 ----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.....+.+|...|.+++|+|++.+|++++.||.|++|+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp ----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred cccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 1245677899999999999999999999999999999854
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=308.69 Aligned_cols=284 Identities=20% Similarity=0.271 Sum_probs=240.9
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc-CCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI-EENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~i 78 (330)
.|.+.|.+++|+|+|++++++ |+.|++||+.+++....+..+. ..|.+++|+|. ++.++++|+.||.|++
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~sg~~d~~v~v 727 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-------EQVNCCHFTNKSNHLLLATGSNDFFLKL 727 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS-------SCEEEEEECSSSSCCEEEEEETTSCEEE
T ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC-------CcEEEEEEecCCCceEEEEEeCCCeEEE
Confidence 589999999999999995444 9999999999998877665543 33699999983 3458899999999999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee---------------------
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH--------------------- 137 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------------------- 137 (330)
||+.+ ......+.+|...|.+++|+| +++++++++.||.|++||+.+++....+.
T Consensus 728 wd~~~---~~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 803 (1249)
T 3sfz_A 728 WDLNQ---KECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKC 803 (1249)
T ss_dssp EETTS---SSEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCC
T ss_pred EECCC---cchhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEE
Confidence 99988 778888899999999999999 89999999999999999987765433221
Q ss_pred ----------------------------------cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccC
Q psy6213 138 ----------------------------------SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH 183 (330)
Q Consensus 138 ----------------------------------~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~ 183 (330)
+|...+.+++|+|++. ++++++.+|.|++||+.+ ......+.+|
T Consensus 804 ~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vwd~~~-~~~~~~~~~h 881 (1249)
T 3sfz_A 804 CSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-LAVIALSQYCVELWNIDS-RLKVADCRGH 881 (1249)
T ss_dssp CCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-EEEEECSSSCEEEEETTT-TEEEEEECCC
T ss_pred EEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEEcCC-CceeeecCCC
Confidence 4667889999999998 699999999999999998 6778888999
Q ss_pred CCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc-------------------------------------ccceeccc
Q psy6213 184 SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS-------------------------------------LEYSINTI 226 (330)
Q Consensus 184 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------------------------~~~~~~~~ 226 (330)
...|.+++|+|++++|++++.||.+++||+..... ........
T Consensus 882 ~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1249)
T 3sfz_A 882 LSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPE 961 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECC
T ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEccc
Confidence 99999999999999999999999999999754211 00011134
Q ss_pred cceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
..+.+++|+|++++++++ + .+|.|++||+.++.. ...+.+|...|.+++|+|++++|++++.||.|++|+..
T Consensus 962 ~~i~~~~~sp~g~~l~~g-~--~~g~i~i~d~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 962 AQVSCCCLSPHLEYVAFG-D--EDGAIKIIELPNNRV-FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp SCEEEEEECTTSSEEEEE-E--TTSCCEEEETTTTSC-EEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEE-c--CCCCEEEEEcCCCce-eeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 578999999999975554 4 599999999998875 77888999999999999999999999999999999854
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-39 Score=267.47 Aligned_cols=278 Identities=11% Similarity=0.171 Sum_probs=221.3
Q ss_pred CCcccceEEEEeeC---CCeeecC--CCeEEEEEcCC-ccee-eeeceeeccccccccceeeeeecccCCcEEEEEcCCC
Q psy6213 2 AYLSPVHKHGLKAD---NGLAQPS--RNVFKIFLIKD-TEFV-ETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG 74 (330)
Q Consensus 2 ~H~~~v~~~~~s~~---~~~~~~g--d~~i~iw~~~~-~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 74 (330)
.|.+.|++++|+|+ |+++++| ||.|++||+++ +... ..+..+ ...|.+++|+| ++++|++++.||
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-------~~~v~~~~~~~-~~~~l~s~~~dg 108 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH-------TGPVLDVCWSD-DGSKVFTASCDK 108 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEEC-------SSCEEEEEECT-TSSEEEEEETTS
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccc-------cCCEEEEEECc-CCCEEEEEcCCC
Confidence 59999999999999 5885555 99999999997 4333 333322 33479999999 999999999999
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEE--EecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCC
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSF--HYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHS 152 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~--~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 152 (330)
.|++||+.+ .+... +..|...|.+++| +| ++.+|++++.||.|++||+++++.+..+..+ ..+.++.+.++
T Consensus 109 ~v~iwd~~~---~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~- 181 (368)
T 3mmy_A 109 TAKMWDLSS---NQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCADVIYP- 181 (368)
T ss_dssp EEEEEETTT---TEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEEEEEETT-
T ss_pred cEEEEEcCC---CCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceEEEecCC-
Confidence 999999987 44443 5679999999999 76 7889999999999999999999998888855 46777777654
Q ss_pred CcEEEEEecCCcEEEEecCCCccceeeec-cCCCCeEEEEEcCCCCE----EEEEecCCcEEEEeCCCCc---cccceec
Q psy6213 153 PYAFASVSENGTIQQWDVRRPEKCFYQFT-AHSGPIFACDWHPEHAW----LATASRDKTIKVWDLSIKP---SLEYSIN 224 (330)
Q Consensus 153 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~~---~~~~~~~ 224 (330)
.+++++.++.+++|+++.......... .+...+.++.+.++... +++++.||.|++||++... .......
T Consensus 182 --~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 182 --MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp --EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred --eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 578888999999999987544433332 23455666666655443 9999999999999998873 2333333
Q ss_pred ccc------------ceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeec
Q psy6213 225 TIA------------SVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 225 ~~~------------~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
+.. ++.+++|+|++++++ +++ .||.|++||+++++. +..+..|..+|.+++|+|++++|++++.
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s~~--~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLA-TVG--SDGRFSFWDKDARTK-LKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEE-EEE--TTSCEEEEETTTTEE-EEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred eecccccccccccccceEEEEEecCCCEEE-EEc--cCCeEEEEECCCCcE-EEEecCCCCCceEEEECCCCCeEEEEec
Confidence 433 699999999999754 454 599999999998866 7888899999999999999999999999
Q ss_pred CCeEeeee
Q psy6213 293 VSIIPRAK 300 (330)
Q Consensus 293 dg~i~iw~ 300 (330)
|+..+.|+
T Consensus 336 d~~~~~~~ 343 (368)
T 3mmy_A 336 YDWSKGHE 343 (368)
T ss_dssp CCSTTCGG
T ss_pred cccccccc
Confidence 98766665
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=274.55 Aligned_cols=278 Identities=18% Similarity=0.234 Sum_probs=231.1
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecc-cCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSC-IEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|++.+++++ ||.|++||+++++....+..+. ..|.+++|++ .++.++++|+.||.|++|
T Consensus 160 ~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 160 GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHN-------STVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCS-------SCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCC-------CccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 599999999999999446666 9999999999988776665443 3368888884 277899999999999999
Q ss_pred ECCCCCCCc--------------------eeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC
Q psy6213 80 NLGQISRSK--------------------QERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN 139 (330)
Q Consensus 80 ~~~~~~~~~--------------------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 139 (330)
|+.+..... ....+.+|...+.++. + +++++++|+.|+.|++||+++++.+..+.+|
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 309 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 998732211 2456778888888874 4 6899999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc
Q psy6213 140 TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL 219 (330)
Q Consensus 140 ~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 219 (330)
...|.+++|+|+++ .+++++.||.|++||+++ ++++..+.+|...|.+++|+ +++|++++.||.|++||+++...
T Consensus 310 ~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~- 384 (464)
T 3v7d_B 310 TDRIYSTIYDHERK-RCISASMDTTIRIWDLEN-GELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR- 384 (464)
T ss_dssp SSCEEEEEEETTTT-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE-
T ss_pred CCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce-
Confidence 99999999999998 699999999999999998 67788899999999999997 57999999999999999998743
Q ss_pred cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 220 EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 220 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
.....+...+..++|+|++++ +++++ |+.|++||+++++........|...|.+++|+ +..++++++.||.+.+|
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~-l~~~~---dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 385 KFSYHHTNLSAITTFYVSDNI-LVSGS---ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEEECTTCCCEEEEEECSSE-EEEEE---TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred eeeecCCCCccEEEEEeCCCE-EEEec---CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 334456677888999999996 66666 89999999999876333367788999999997 45566666777777666
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=298.99 Aligned_cols=290 Identities=10% Similarity=0.031 Sum_probs=214.1
Q ss_pred CcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceee-----ccccccccceeeeeecccCCcEEEEEcCCCc
Q psy6213 3 YLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRV-----GKNINLNFSCNDVAWSCIEENHIATGATNGA 75 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 75 (330)
|.+.|++++|+|+++++++| ||.|++||+++++.. .+..+. .....+...|.+++|+|.++..+++|+.||.
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~ 175 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT 175 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCc
Confidence 67889999999999996665 999999999987653 111100 1112344568999999955689999999999
Q ss_pred EEEEECCCCCCCceeEEeccc------------------ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeee--
Q psy6213 76 VVVWNLGQISRSKQERVFNDH------------------KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI-- 135 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~~~------------------~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-- 135 (330)
| +||+.+ .+....+..| ...|.+++|+| ++.+|++|+.||.|++||+++++++..
T Consensus 176 v-lWd~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lWd~~~g~~~~~r~ 250 (902)
T 2oaj_A 176 L-TYSLVE---NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFWDANSGHMIMART 250 (902)
T ss_dssp E-EEETTT---TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEEETTTCCEEEEEC
T ss_pred E-EEECCC---CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEEe
Confidence 9 999987 5666666544 57899999999 899999999999999999998877643
Q ss_pred ee---c-------------CCCCeEEEEEc----CCCCcEEEEEecC---------------------------------
Q psy6213 136 FH---S-------------NTESVRDVEFN----PHSPYAFASVSEN--------------------------------- 162 (330)
Q Consensus 136 ~~---~-------------~~~~v~~~~~~----~~~~~~~~~~~~d--------------------------------- 162 (330)
+. . +..+|.+++|+ |++..++++|+.+
T Consensus 251 l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~ 330 (902)
T 2oaj_A 251 VFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYAN 330 (902)
T ss_dssp SSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHS
T ss_pred ecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcC
Confidence 21 1 23468899995 3333355555433
Q ss_pred -------------------------------------------CcEEEEecCCCcccee---------------------
Q psy6213 163 -------------------------------------------GTIQQWDVRRPEKCFY--------------------- 178 (330)
Q Consensus 163 -------------------------------------------g~i~i~d~~~~~~~~~--------------------- 178 (330)
|.|++||+.++.....
T Consensus 331 ~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s 410 (902)
T 2oaj_A 331 PKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAA 410 (902)
T ss_dssp CSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEE
T ss_pred ccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEE
Confidence 3444444432111000
Q ss_pred -------------------eeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc--e---------eccccc
Q psy6213 179 -------------------QFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY--S---------INTIAS 228 (330)
Q Consensus 179 -------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~---------~~~~~~ 228 (330)
.+.+|...+.+++|+|++++|++|+.|++|++||+.++..... . ..|...
T Consensus 411 ~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~ 490 (902)
T 2oaj_A 411 SVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELA 490 (902)
T ss_dssp EEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCC
T ss_pred EcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCc
Confidence 0122333444566688999999999999999999988732110 1 156778
Q ss_pred eEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC--------------------------------------------cc
Q psy6213 229 VSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY--------------------------------------------IP 264 (330)
Q Consensus 229 v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~--------------------------------------------~~ 264 (330)
|.+++|+|++++ +++++ .||+|++||+.+++ .+
T Consensus 491 V~svafspdg~~-LAsgs--~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 567 (902)
T 2oaj_A 491 VDKISFAAETLE-LAVSI--ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP 567 (902)
T ss_dssp EEEEEEETTTTE-EEEEE--TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred eeEEEecCCCCe-EEEEe--cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence 999999999997 56666 69999999998652 23
Q ss_pred ceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 265 LASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 265 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+..+.+|.+.|++++|+||| +||+|+.|++|++|+..
T Consensus 568 ~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 568 STAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp EEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred eEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence 56778899999999999999 99999999999999854
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=261.93 Aligned_cols=244 Identities=19% Similarity=0.314 Sum_probs=201.9
Q ss_pred cccceeeeee-----cccCCcEEEEEcCCCcEEEEECCCCCC----CceeEEecccccceeEEEEEecCCCEEEEEecCC
Q psy6213 50 LNFSCNDVAW-----SCIEENHIATGATNGAVVVWNLGQISR----SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG 120 (330)
Q Consensus 50 ~~~~v~~~~~-----~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~ 120 (330)
+...|++++| ++.++++|++|+.|+.|++||+..... ......+.+|...|.+++|+| ++.++++|+.|+
T Consensus 20 H~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~ 98 (343)
T 2xzm_R 20 HSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDK 98 (343)
T ss_dssp CSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEETTS
T ss_pred chhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEEEcCCC
Confidence 3445799999 654789999999999999999875321 345667889999999999998 899999999999
Q ss_pred cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee--eeccCCCCeEEEEEcCCC--
Q psy6213 121 TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY--QFTAHSGPIFACDWHPEH-- 196 (330)
Q Consensus 121 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~i~~~~~~~~~-- 196 (330)
+|++||+++++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.. ..... ....|...|.+++|+|++
T Consensus 99 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 176 (343)
T 2xzm_R 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKS 176 (343)
T ss_dssp EEEEEETTSSCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeecccccc
Confidence 999999999999999999999999999999998 589999999999999974 22221 123688899999999987
Q ss_pred --------CEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEe
Q psy6213 197 --------AWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASF 268 (330)
Q Consensus 197 --------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~ 268 (330)
.+|++++.||.|++||.. .+.......|...|.+++|+|++++ +++++ .|+.|++||+.....+...+
T Consensus 177 ~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs--~dg~v~iwd~~~~~~~~~~~ 252 (343)
T 2xzm_R 177 ANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKY-IATGG--KDKKLLIWDILNLTYPQREF 252 (343)
T ss_dssp CSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSE-EEEEE--TTCEEEEEESSCCSSCSEEE
T ss_pred ccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCE-EEEEc--CCCeEEEEECCCCcccceee
Confidence 799999999999999954 3345556678899999999999997 55555 69999999996555434444
Q ss_pred ecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 269 TEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 269 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+...|.+++|+|++++++ ++.|+.|++|+..
T Consensus 253 -~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~ 284 (343)
T 2xzm_R 253 -DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLM 284 (343)
T ss_dssp -ECSSCEEEEEECSSSCEEE-EEESSCEEEEESS
T ss_pred -cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeC
Confidence 3456799999999998776 4568889999864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=267.95 Aligned_cols=245 Identities=19% Similarity=0.289 Sum_probs=207.7
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEec-CCCEEEEEecCCcEEEEEeecC
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV-ESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
..|.+++|+| ++++|++|+.||.|++|++.. ........+..|...|.+++|+|. ++++|++++.||.|++||++++
T Consensus 12 ~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 12 ELIHDAVLDY-YGKRLATCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp CCEEEEEECS-SSSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred ccEEEEEEcC-CCCEEEEEECCCcEEEEecCC-CcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence 3479999999 999999999999999999973 125677788899999999999872 2899999999999999999998
Q ss_pred c--eeeeeecCCCCeEEEEEcCC--CCcEEEEEecCCcEEEEecCCCc-cceeeeccCCCCeEEEEEcC-----------
Q psy6213 131 E--STKIFHSNTESVRDVEFNPH--SPYAFASVSENGTIQQWDVRRPE-KCFYQFTAHSGPIFACDWHP----------- 194 (330)
Q Consensus 131 ~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~----------- 194 (330)
+ .+..+..|...|.+++|+|+ +. ++++++.||.|++||+++.. .....+..|...|.+++|+|
T Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 168 (379)
T 3jrp_A 90 RWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 168 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---------
T ss_pred ceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccC
Confidence 7 67777889999999999999 77 69999999999999998743 23446678999999999999
Q ss_pred --CCCEEEEEecCCcEEEEeCCCCccc----cceeccccceEEEEEcCC---CCeEEEEeecccCCeEEEEEccCCCcc-
Q psy6213 195 --EHAWLATASRDKTIKVWDLSIKPSL----EYSINTIASVSRIKWRPQ---RKFHLASCSLVVDSSVNVWDIRRPYIP- 264 (330)
Q Consensus 195 --~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~~~~i~i~d~~~~~~~- 264 (330)
++.+|++++.||.|++||++..... .....|...|.+++|+|+ +.+ +++++ .||.|++||++.+..+
T Consensus 169 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~-l~s~~--~dg~i~iwd~~~~~~~~ 245 (379)
T 3jrp_A 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY-LASVS--QDRTCIIWTQDNEQGPW 245 (379)
T ss_dssp -CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE-EEEEE--TTSCEEEEEESSTTSCC
T ss_pred CCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCe-EEEEe--CCCEEEEEeCCCCCccc
Confidence 6999999999999999999876432 334457889999999999 675 55565 6999999999987422
Q ss_pred ---ceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 265 ---LASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 265 ---~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
......|...|.+++|+|++++|++++.||.|++|+..
T Consensus 246 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 246 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 22223478899999999999999999999999999854
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=296.64 Aligned_cols=227 Identities=15% Similarity=0.210 Sum_probs=182.6
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|++++|+|+++++++| ||.|+||+....+...... ....|.+++|+| +++|++++.|+.|++|
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--------~~~~V~~l~fsp--g~~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE--------DRSAIKEMRFVK--GIYLVVINAKDTVYVL 84 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS--------SCCCEEEEEEET--TTEEEEEETTCEEEEE
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC--------CCCCEEEEEEcC--CCEEEEEECcCeEEEE
Confidence 588999999999999996666 9999999988766543321 133579999999 5599999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee-----------eeeecCCCCeEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST-----------KIFHSNTESVRDVEF 148 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~~~~~~v~~~~~ 148 (330)
|+.+ .+.+..+. |...|++++|+| +++++++|+.||.|++||+++++.. ..+.+|..+|.+++|
T Consensus 85 d~~~---~~~~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~ 159 (902)
T 2oaj_A 85 SLYS---QKVLTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQW 159 (902)
T ss_dssp ETTT---CSEEEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEE
T ss_pred ECCC---CcEEEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEE
Confidence 9987 56666665 668999999999 8999999999999999999887653 234568899999999
Q ss_pred cCCCCcEEEEEecCCcEEEEecCCCccceeeeccC------------------CCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 149 NPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH------------------SGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 149 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
+|++...+++|+.||.| +||+++ .++...+..| ...|.+++|+|+|++|++++.||.|++
T Consensus 160 sp~~~~~l~~g~~dg~v-lWd~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 160 NPRDIGTVLISYEYVTL-TYSLVE-NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp ETTEEEEEEEECSSCEE-EEETTT-TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ccCCCCEEEEEeCCCcE-EEECCC-CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 99765579999999999 999998 5556666544 577999999999999999999999999
Q ss_pred EeCCCCccccc-ee-----------------ccccceEEEEEc----CCCCeEEEEe
Q psy6213 211 WDLSIKPSLEY-SI-----------------NTIASVSRIKWR----PQRKFHLASC 245 (330)
Q Consensus 211 ~d~~~~~~~~~-~~-----------------~~~~~v~~~~~~----~~~~~l~~~~ 245 (330)
||+++++.+.. .. .+..+|.+++|+ |++..+++++
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg 294 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH 294 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeC
Confidence 99988754321 00 124478999994 4444455555
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=265.50 Aligned_cols=270 Identities=21% Similarity=0.351 Sum_probs=230.7
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|.. +++++|+++++| ||.|++||+.+++....+..|.. .|.+++|+ ++++++|+.||.|++|
T Consensus 116 ~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-------~v~~~~~~---~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 116 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-------GVWSSQMR---DNIIISGSTDRTLKVW 184 (445)
T ss_dssp CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSS-------CEEEEEEE---TTEEEEEETTSCEEEE
T ss_pred ccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCC-------CEEEEEec---CCEEEEEeCCCeEEEE
Confidence 47777643 356678885555 99999999999988776654433 36888886 4699999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|+.+ .+....+.+|...|.++.|+ ++.+++|+.||.|++||+++++.+..+..|...+.+++| +++ .++++
T Consensus 185 d~~~---~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~ 255 (445)
T 2ovr_B 185 NAET---GECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR-RVVSG 255 (445)
T ss_dssp ETTT---TEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSS-CEEEE
T ss_pred ECCc---CcEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCC-EEEEE
Confidence 9988 78888899999999999986 467999999999999999999999999999999999999 555 59999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
+.||.|++||+++ .+.+..+.+|...|.++.| ++.++++++.||.|++||+++++.......+...+.++.+++ .
T Consensus 256 ~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~ 330 (445)
T 2ovr_B 256 AYDFMVKVWDPET-ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--N 330 (445)
T ss_dssp ETTSCEEEEEGGG-TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--T
T ss_pred cCCCEEEEEECCC-CcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC--C
Confidence 9999999999998 6778888899999999999 788999999999999999999877777777888888888854 4
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeec---CCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTE---HKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+ +++++ .||.|++||+++++. +..+.. |...|.+++|+ +++|++++.||.|++|+..
T Consensus 331 ~-l~~~~--~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 331 I-LVSGN--ADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp E-EEEEE--TTSCEEEEETTTCCE-EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred E-EEEEe--CCCeEEEEECCCCcE-EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence 4 55555 699999999998875 667765 88899999995 6899999999999999854
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=266.98 Aligned_cols=271 Identities=17% Similarity=0.316 Sum_probs=231.6
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|.+++|+ +.+ ++++ ||.|++||+.+++....+..+.. .|.+++|+ ++.+++|+.||.|++|
T Consensus 157 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~-------~v~~~~~~---~~~l~s~s~dg~i~~w 224 (445)
T 2ovr_B 157 GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTS-------TVRCMHLH---EKRVVSGSRDATLRVW 224 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSS-------CEEEEEEE---TTEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCC-------cEEEEEec---CCEEEEEeCCCEEEEE
Confidence 589999999998 456 5555 99999999999887766654433 36888885 4779999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|+.+ .+....+..|...|.++.| +++++++|+.||.|++||+++++.+..+..|...+.+++| ++. .++++
T Consensus 225 d~~~---~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~ 295 (445)
T 2ovr_B 225 DIET---GQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGI-HVVSG 295 (445)
T ss_dssp ESSS---CCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS-EEEEE
T ss_pred ECCC---CcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCC-EEEEE
Confidence 9988 7788888899999999998 5788999999999999999999999999999999999999 555 69999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec---cccceEEEEEcC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN---TIASVSRIKWRP 236 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~~~~~~ 236 (330)
+.||.|++||+++ .+.+..+..|...+.++.++ ++++++++.||.|++||+++++....... +...|.+++|++
T Consensus 296 ~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 372 (445)
T 2ovr_B 296 SLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 372 (445)
T ss_dssp ETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS
T ss_pred eCCCeEEEEECCC-CCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC
Confidence 9999999999998 66788888999999988875 67999999999999999998866555443 778899999964
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCccceEe-----ecCCCCeEEEEEecCCCEEEEeecCCe----Eeeeecc
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASF-----TEHKDVVSGLAWRGDPQLFIASSRVSI----IPRAKNI 302 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~dg~----i~iw~~~ 302 (330)
++ +++++ .||.|++||+.+++. +..+ ..|.+.|++++|+|++.++++++.||. |.+|+..
T Consensus 373 --~~-l~s~~--~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 373 --NF-VITSS--DDGTVKLWDLKTGEF-IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp --SE-EEEEE--TTSEEEEEETTTCCE-EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred --CE-EEEEe--CCCeEEEEECCCCce-eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 44 66666 699999999999876 5555 467889999999999999999999997 9998654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=274.26 Aligned_cols=238 Identities=20% Similarity=0.283 Sum_probs=196.0
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC--ceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS--KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
+|.+++|+| ++++|++|+.||.|++||+.+ . +....+.+|...|.+++|+| ++++|++++.|+.|++||+.++
T Consensus 13 ~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~---~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 13 PSYEHAFNS-QRTEFVTTTATNQVELYEQDG---NGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp CCSCCEECS-SSSEEECCCSSSCBCEEEEET---TEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC-----
T ss_pred cEEEEEECC-CCCEEEEecCCCEEEEEEccC---CceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 479999999 999999999999999999987 4 67777889999999999998 8899999999999999999987
Q ss_pred c---eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc--ceeeecc-CCCCeEEEEEcCCCCEEEEEec
Q psy6213 131 E---STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK--CFYQFTA-HSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 131 ~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
+ ....+..|...|.+++|+|+++ .|++++.|+.|++||+++... ....+.. |...|.+++|+|++++|++++.
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 7 5667778999999999999998 589999999999999997432 4566666 9999999999999999999999
Q ss_pred CCcEEEEeCCCC------------------ccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc--
Q psy6213 205 DKTIKVWDLSIK------------------PSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP-- 264 (330)
Q Consensus 205 dg~i~i~d~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~-- 264 (330)
|+.|++||++.. +..... .|...|.+++|+|++++ +++++ .|+.|++||++++..+
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~-l~~~~--~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA-LAYAG--HDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC-EEEEE--TTTEEC-CEECSTTSCEE
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE-EEEEe--CCCcEEEEECCCCCCcce
Confidence 999999998532 122222 77888999999999997 44555 5999999999988652
Q ss_pred -ceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 265 -LASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 265 -~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
+..+..|...|.+++|+|++++|++++.++.+ +|..
T Consensus 243 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp ECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred eeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence 56788999999999999999999999877766 5543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=289.57 Aligned_cols=285 Identities=17% Similarity=0.224 Sum_probs=239.7
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|++++++++ ||.|++||+.+++....+..+.. .|.+++|+| ++.+|++++.||.|++|
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~s~-~~~~l~~~~~dg~i~vw 124 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD-------YIRSIAVHP-TKPYVLSGSDDLTVKLW 124 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS-------CEEEEEECS-SSSEEEEEETTSEEEEE
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-------CEEEEEEeC-CCCEEEEEcCCCEEEEE
Confidence 488999999999999995555 99999999999887766654433 369999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCC-CCeEEEEEcC--CCCcEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNT-ESVRDVEFNP--HSPYAF 156 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~~~ 156 (330)
|+.+. ......+..|...|.+++|+|.+++.+++++.||.|++||+.+++....+..+. ..+.+++|+| +++ .+
T Consensus 125 ~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l 201 (814)
T 3mkq_A 125 NWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP-YM 201 (814)
T ss_dssp EGGGT--SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCC-EE
T ss_pred ECCCC--ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCC-EE
Confidence 99762 366677888999999999998677899999999999999998888877776654 8899999999 887 69
Q ss_pred EEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcC
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRP 236 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 236 (330)
++++.||.|++||+++ ......+..|...|.+++|+|+++++++++.||.|++||+.+++.......+...+.+++|+|
T Consensus 202 ~~~~~dg~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 280 (814)
T 3mkq_A 202 ITASDDLTIKIWDYQT-KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (814)
T ss_dssp EEECTTSEEEEEETTT-TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred EEEeCCCEEEEEECCC-CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence 9999999999999988 667888888999999999999999999999999999999999877777777788999999999
Q ss_pred CCCeE-EEEeecccCCeEEEEEccCCCccc------------------------------------------eEeecCCC
Q psy6213 237 QRKFH-LASCSLVVDSSVNVWDIRRPYIPL------------------------------------------ASFTEHKD 273 (330)
Q Consensus 237 ~~~~l-~~~~~~~~~~~i~i~d~~~~~~~~------------------------------------------~~~~~~~~ 273 (330)
++..+ ++++. ++.+.+|++....... .....+..
T Consensus 281 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (814)
T 3mkq_A 281 TGRKNYIASGF---DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDV 357 (814)
T ss_dssp TCGGGEEEEEE---TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSS
T ss_pred CCCceEEEEEe---CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCcc
Confidence 99754 56665 8889999876432110 11123445
Q ss_pred CeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 274 VVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 274 ~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+.+++|+|+|++|++++ ||.+.+|...
T Consensus 358 ~~~~~~~spdg~~la~~~-~~~~~i~~~~ 385 (814)
T 3mkq_A 358 FPQSLAHSPNGRFVTVVG-DGEYVIYTAL 385 (814)
T ss_dssp CCSEEEECTTSSEEEEEE-TTEEEEEETT
T ss_pred CCceeEECCCCCEEEEec-CCEEEEEECc
Confidence 678899999999888887 8889988743
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=278.45 Aligned_cols=247 Identities=12% Similarity=0.165 Sum_probs=196.9
Q ss_pred cccceeeeeecccCC---------cEEEE-------------------EcCCCcEEEEECCCCCCC-ceeEEecccccce
Q psy6213 50 LNFSCNDVAWSCIEE---------NHIAT-------------------GATNGAVVVWNLGQISRS-KQERVFNDHKRTV 100 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~---------~~l~~-------------------~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~i 100 (330)
+...|.+++|+| ++ ++||+ ++.|+.|+||++.+.... .....+..|.+.|
T Consensus 132 ~~~~V~sv~w~p-~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V 210 (524)
T 2j04_B 132 VGGLVTDIAWLN-IEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV 210 (524)
T ss_dssp CCC--CCCSCEE-ECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSE
T ss_pred CCCceeEEEecc-cCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE
Confidence 345678899988 54 56666 457789999998763211 1123456678899
Q ss_pred eEEEEEec-----CCCEEEEEecCCcEEEEEeecCce-----------eeeeecCCCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 101 NKVSFHYV-----ESNWLISGSQDGTMRLFDIRCQES-----------TKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 101 ~~i~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
.+++|+|. ++.+|++++.||+|++||+.+++. ...+.+|...|++++|+|++ .|++|+.||+
T Consensus 211 ~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~Dgt 288 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGF 288 (524)
T ss_dssp EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSE
T ss_pred EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCE
Confidence 99999983 257999999999999999986642 23667788999999999864 6999999999
Q ss_pred EEEEecCCCccceeeeccCCCCeEEE--EEcCCC-CEEEEEecCCcEEEEeCCCCccccceeccc--cceEEEEEcCCCC
Q psy6213 165 IQQWDVRRPEKCFYQFTAHSGPIFAC--DWHPEH-AWLATASRDKTIKVWDLSIKPSLEYSINTI--ASVSRIKWRPQRK 239 (330)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~ 239 (330)
|++||++++..+...+..|...|.++ .|+|++ .+|++++.|++|++||+++++.......+. ..+.+++|+|+++
T Consensus 289 V~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~ 368 (524)
T 2j04_B 289 VAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY 368 (524)
T ss_dssp EEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT
T ss_pred EEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC
Confidence 99999997555666788999999999 578887 899999999999999999875544444443 3578999999999
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
. +++++ .|+.|++||++++.. +..+.+|.+.|++++|+|++++|++|+.||+|++|+...
T Consensus 369 ~-l~s~~--~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 369 S-YIYSD--GASSLRAVPSRAAFA-VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp E-EEEEC--SSSEEEEEETTCTTC-CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred e-EEEeC--CCCcEEEEECccccc-ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 7 44544 599999999998876 677889999999999999999999999999999998643
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=259.81 Aligned_cols=241 Identities=17% Similarity=0.199 Sum_probs=207.3
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCc--eeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSK--QERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
.+|.+++|+| ++++|++++.|+.|++||+.+ .+ ....+..|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 9 ~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~---~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 9 EPISCHAWNK-DRTQIAICPNNHEVHIYEKSG---NKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp SCCCEEEECT-TSSEEEEECSSSEEEEEEEET---TEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEET
T ss_pred CCeEEEEECC-CCCEEEEEeCCCEEEEEeCCC---CcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCC
Confidence 3479999999 999999999999999999987 44 7788889999999999998 899999999999999999998
Q ss_pred Cceeeee--ecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc---ceeeeccCCCCeEEEEEcCCCCEEEEEec
Q psy6213 130 QESTKIF--HSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK---CFYQFTAHSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 130 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
++....+ ..|...|.+++|+|+++ .+++++.||.|++||++.... .......|...|.+++|+|++++|++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 8754443 56888999999999998 699999999999999987442 22334668899999999999999999999
Q ss_pred CCcEEEEeCC------------------CCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccce
Q psy6213 205 DKTIKVWDLS------------------IKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA 266 (330)
Q Consensus 205 dg~i~i~d~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~ 266 (330)
||.|++||++ .++.......+...+.+++|+|+++++++ ++ .|+.|++||+++++. +.
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~--~d~~i~i~d~~~~~~-~~ 238 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW-VS--HDSTVCLADADKKMA-VA 238 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE-EE--TTTEEEEEEGGGTTE-EE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE-Ee--CCCEEEEEECCCCce-eE
Confidence 9999999964 33344444467889999999999997554 44 599999999998875 78
Q ss_pred EeecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 267 SFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
.+..|..+|.+++|+|++.+|+++ .|+.|++|+...
T Consensus 239 ~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 239 TLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 888999999999999999988877 999999998654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=264.14 Aligned_cols=247 Identities=19% Similarity=0.297 Sum_probs=203.3
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCc--ceeeeeceeeccccccccceeeeeecccC--CcEEEEEcCCCc
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDT--EFVETHNLRVGKNINLNFSCNDVAWSCIE--ENHIATGATNGA 75 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~ 75 (330)
.|.++|++++|+|++++++++ ||.|++|++..+ +....+..| ...|.+++|+| + +++|++++.||.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h-------~~~v~~~~~~~-~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-------EGPVWRVDWAH-PKFGTILASCSYDGK 80 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-------SSCEEEEEECC-GGGCSEEEEEETTSC
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC-------CCcEEEEEeCC-CCCCCEEEEeccCCE
Confidence 599999999999999995555 999999999843 333333333 33479999987 5 899999999999
Q ss_pred EEEEECCCCCCCceeEEecccccceeEEEEEecC--CCEEEEEecCCcEEEEEeecCc--eeeeeecCCCCeEEEEEcC-
Q psy6213 76 VVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE--SNWLISGSQDGTMRLFDIRCQE--STKIFHSNTESVRDVEFNP- 150 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~- 150 (330)
|++||+.+. .......+..|...|.+++|+| + +.+|++++.|+.|++||++++. ....+..|...|.+++|+|
T Consensus 81 v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 81 VLIWKEENG-RWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEEEEEETT-EEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred EEEEEcCCC-ceeEeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 999999871 1226677788999999999998 6 8999999999999999998874 3445667899999999999
Q ss_pred ------------CCCcEEEEEecCCcEEEEecCCCcc---ceeeeccCCCCeEEEEEcCC---CCEEEEEecCCcEEEEe
Q psy6213 151 ------------HSPYAFASVSENGTIQQWDVRRPEK---CFYQFTAHSGPIFACDWHPE---HAWLATASRDKTIKVWD 212 (330)
Q Consensus 151 ------------~~~~~~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d 212 (330)
++. ++++++.||.|++||+++... ....+..|...|.+++|+|+ +++|++++.||.|++||
T Consensus 159 ~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 159 TIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp C----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 466 799999999999999986432 34567789999999999999 89999999999999999
Q ss_pred CCCCcc-----ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 213 LSIKPS-----LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 213 ~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
++.... ......+...+.+++|+|+++++++++ .||.|++|++....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG---GDNKVTLWKENLEG 289 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE---SSSSEEEEEEEETT
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec---CCCcEEEEeCCCCC
Confidence 988632 222334678899999999999855555 59999999998543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=268.20 Aligned_cols=250 Identities=20% Similarity=0.393 Sum_probs=207.1
Q ss_pred CCcccceEEEEeeC-CCeeec-C-CCeEEEEEcCC----------cceeeeeceeeccccccccceeeeeecccCCc-EE
Q psy6213 2 AYLSPVHKHGLKAD-NGLAQP-S-RNVFKIFLIKD----------TEFVETHNLRVGKNINLNFSCNDVAWSCIEEN-HI 67 (330)
Q Consensus 2 ~H~~~v~~~~~s~~-~~~~~~-g-d~~i~iw~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l 67 (330)
.|.+.|++++|+|+ +.++++ + +|.|++|++.. ......+.. +...+.+++|+| ++. +|
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~~-~~~~~l 197 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-------HQKEGYGLSWNP-NLNGYL 197 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-------CSSCCCCEEECT-TSTTEE
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC-------CCCCeEEEEeCC-CCCCeE
Confidence 58999999999998 556554 4 99999999986 222222222 233469999999 666 99
Q ss_pred EEEcCCCcEEEEECCCCCCC----ceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC---ceeeeeecCC
Q psy6213 68 ATGATNGAVVVWNLGQISRS----KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ---ESTKIFHSNT 140 (330)
Q Consensus 68 ~~~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~ 140 (330)
++|+.||.|++|++...... .....+..|...|.+++|+|.++.+|++++.||.|++||++++ +.+..+..|.
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 99999999999999873221 1245667899999999999977899999999999999999977 5677788899
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCC-EEEEEecCCcEEEEeCCCC---
Q psy6213 141 ESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHA-WLATASRDKTIKVWDLSIK--- 216 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~--- 216 (330)
..|++++|+|++++++++|+.||.|++||+++...++..+..|...|.+++|+|+++ +|++++.||.|++||+...
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 999999999999988999999999999999986777888889999999999999985 7999999999999999873
Q ss_pred -----------ccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 217 -----------PSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 217 -----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
+.......|...|.+++|+|++++++++++ .||.|++|++...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s--~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS--EDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE--TTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE--CCCCEEEeEcccc
Confidence 223334456788999999999996677777 7999999998743
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=257.49 Aligned_cols=274 Identities=15% Similarity=0.173 Sum_probs=209.7
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEE-EEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHI-ATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw 79 (330)
.|.++|++++|+|||+++++| +..++||++++++.......+ .+..+++.+ +++.+ ++++.|+.|++|
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMR---------HLSKVRMLH-RTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECS---------CCCEEEECT-TSSEEEEECSSTTEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecC---------CeEEEEEcC-CCCEEEEEECCccEEEEE
Confidence 488999999999999998888 777899999876654332211 146778887 56655 678888999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC-ceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-ESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
|..+ .+.+..+. +...|.++++++ +.++++. |+.|++||+.++ +.+..+.. +...+++++ . .++.
T Consensus 87 d~~~---~~~~~~~~-~~~~v~~v~~~~---~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~-~la~ 152 (355)
T 3vu4_A 87 DDVK---KQDVSRIK-VDAPVKDLFLSR---EFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--G-LLVY 152 (355)
T ss_dssp ETTT---TEEEEEEE-CSSCEEEEEECS---SEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--T-EEEE
T ss_pred ECCC---CcEEEEEE-CCCceEEEEEcC---CEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--c-EEEE
Confidence 9988 66666665 667999999985 3344444 789999999988 67666664 455566777 4 3544
Q ss_pred --EecCCcEEEEecCCCc--------------cc-eeeeccCCCCeEEEEEcCCCCEEEEEecCCc-EEEEeCCCCcccc
Q psy6213 159 --VSENGTIQQWDVRRPE--------------KC-FYQFTAHSGPIFACDWHPEHAWLATASRDKT-IKVWDLSIKPSLE 220 (330)
Q Consensus 159 --~~~dg~i~i~d~~~~~--------------~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~ 220 (330)
|+.+|.|++||+++.. .+ ...+.+|.+.|.+++|+|++++|++++.|++ |++||+++++...
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 6889999999998743 12 6778899999999999999999999999998 9999999987766
Q ss_pred cee-c-cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc-ceEe---------------------ecCCCCeE
Q psy6213 221 YSI-N-TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP-LASF---------------------TEHKDVVS 276 (330)
Q Consensus 221 ~~~-~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~-~~~~---------------------~~~~~~v~ 276 (330)
... . |...|.+++|+|++++ +++++ .|+.|++||++.+... ...+ ..+..+..
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~-l~s~s--~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSK-LAVVS--DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGC 309 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCE-EEEEE--TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCC
T ss_pred EEEcCCCCCcEEEEEECCCCCE-EEEEE--CCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCce
Confidence 655 3 8899999999999997 55555 5999999999765321 1111 01122346
Q ss_pred EEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 277 GLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 277 ~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.++|++|++.|++++.||.+++|...
T Consensus 310 ~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 310 KIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 78999999999999999999999743
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=264.41 Aligned_cols=244 Identities=13% Similarity=0.225 Sum_probs=206.6
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|++++|+|+++++++| ||.|++||+.+++....+..+.. .|.+++|+ ++.+++|+.||.|++|
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~---~~~l~~~~~dg~i~i~ 201 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA-------RVGCLSWN---RHVLSSGSRSGAIHHH 201 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS-------CEEEEEEE---TTEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC-------ceEEEEEC---CCEEEEEcCCCCEEEE
Confidence 378999999999999995555 99999999999887776654433 36889995 4799999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
|+... ......+..|...|.+++|+| ++.+|++|+.|+.|++||+++++....+..|...|.+++|+|++..+++++
T Consensus 202 d~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 202 DVRIA--NHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp ETTSS--SCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred ecccC--cceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEe
Confidence 99842 456777889999999999999 899999999999999999999999999988999999999999988888887
Q ss_pred e--cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe--cCCcEEEEeCCCCccc--cceeccccceEEEE
Q psy6213 160 S--ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS--RDKTIKVWDLSIKPSL--EYSINTIASVSRIK 233 (330)
Q Consensus 160 ~--~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~--~~~~~~~~~v~~~~ 233 (330)
+ .|+.|++||+++ ......+. +...+.+++|+|+++++++++ .||.|++||+.+++.. .....|...|.+++
T Consensus 279 ~gs~d~~i~i~d~~~-~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~ 356 (401)
T 4aez_A 279 GGTMDKQIHFWNAAT-GARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA 356 (401)
T ss_dssp CCTTTCEEEEEETTT-CCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEE
T ss_pred cCCCCCEEEEEECCC-CCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEE
Confidence 6 799999999997 55666665 678899999999999999954 8999999999886432 23456788999999
Q ss_pred EcCCCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 234 WRPQRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
|+|++++++ +++ .||.|++||+.+++.
T Consensus 357 ~s~dg~~l~-s~~--~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 357 LSPDGRILS-TAA--SDENLKFWRVYDGDH 383 (401)
T ss_dssp ECTTSSEEE-EEC--TTSEEEEEECCC---
T ss_pred ECCCCCEEE-EEe--CCCcEEEEECCCCcc
Confidence 999999754 444 599999999998875
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=267.03 Aligned_cols=245 Identities=18% Similarity=0.338 Sum_probs=200.1
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC--------CceeEEecccc------------cceeEEEEEecC
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR--------SKQERVFNDHK------------RTVNKVSFHYVE 109 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--------~~~~~~~~~~~------------~~i~~i~~~~~~ 109 (330)
....|++++|+| ++++||+|+.||.|++|++.+... .+....+.+|. ..|.+++|+| +
T Consensus 27 ~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~-~ 104 (447)
T 3dw8_B 27 EADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP-Q 104 (447)
T ss_dssp GGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC-C
T ss_pred ccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC-C
Confidence 345689999999 999999999999999999986321 12466788898 8899999999 5
Q ss_pred C--CEEEEEecCCcEEEEEeecCcee---------------------------------------ee-eecCCCCeEEEE
Q psy6213 110 S--NWLISGSQDGTMRLFDIRCQEST---------------------------------------KI-FHSNTESVRDVE 147 (330)
Q Consensus 110 ~--~~l~~~~~d~~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~v~~~~ 147 (330)
+ .+|++++.|+.|++||+.+++.. .. ..+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 79999999999999999875432 12 356889999999
Q ss_pred EcCCCCcEEEEEecCCcEEEEecCCCcccee-------eeccCCCCeEEEEEcCCC-CEEEEEecCCcEEEEeCCCCcc-
Q psy6213 148 FNPHSPYAFASVSENGTIQQWDVRRPEKCFY-------QFTAHSGPIFACDWHPEH-AWLATASRDKTIKVWDLSIKPS- 218 (330)
Q Consensus 148 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~- 218 (330)
|+|+++ +|+++ .|+.|++||+++...... .+..|...|.+++|+|++ ++|++++.||.|++||+++++.
T Consensus 185 ~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 185 INSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp ECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 999998 58887 799999999995444444 366899999999999998 9999999999999999998764
Q ss_pred ---ccceecccc------------ceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCC---------
Q psy6213 219 ---LEYSINTIA------------SVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDV--------- 274 (330)
Q Consensus 219 ---~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~--------- 274 (330)
......+.. .+.+++|+|++++ +++++ . +.|++||++....++..+..|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEee--C-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 333444443 8999999999997 66666 5 999999999744557888888642
Q ss_pred ------eEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 275 ------VSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 275 ------v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+..++|+|++++|++++.||.|++|+..
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred ccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 3349999999999999999999999865
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=260.87 Aligned_cols=242 Identities=15% Similarity=0.227 Sum_probs=201.0
Q ss_pred CCcccceEEEEeeC----CCeeec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCc
Q psy6213 2 AYLSPVHKHGLKAD----NGLAQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA 75 (330)
Q Consensus 2 ~H~~~v~~~~~s~~----~~~~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 75 (330)
.|.+.|++++|+|+ ++++++ + ||.|++||+.+++....+..+. ..|.+++|+|.++++|++++.||.
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~l~s~~~dg~ 139 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHG-------NAINELKFHPRDPNLLLSVSKDHA 139 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCC-------SCEEEEEECSSCTTEEEEEETTSC
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCC-------CcEEEEEECCCCCCEEEEEeCCCe
Confidence 37788999999999 557444 4 9999999999988776655433 347999999977899999999999
Q ss_pred EEEEECCCCCCCceeEEe---cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec--------------
Q psy6213 76 VVVWNLGQISRSKQERVF---NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS-------------- 138 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------------- 138 (330)
|++||+.+ .+....+ ..|...|.+++|+| ++++|++++.||.|++||+++++....+..
T Consensus 140 i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (366)
T 3k26_A 140 LRLWNIQT---DTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFI 215 (366)
T ss_dssp EEEEETTT---TEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCC
T ss_pred EEEEEeec---CeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccc
Confidence 99999987 6666666 68999999999998 899999999999999999988765544433
Q ss_pred --------------CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc-------------ceeeeccCCCCeEEEE
Q psy6213 139 --------------NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK-------------CFYQFTAHSGPIFACD 191 (330)
Q Consensus 139 --------------~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-------------~~~~~~~~~~~i~~~~ 191 (330)
|...|.+++|+ ++ ++++++.||.|++||+++... .+..+..|...|.+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (366)
T 3k26_A 216 SQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292 (366)
T ss_dssp CEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred ceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence 88999999999 44 699999999999999987432 3566778889999999
Q ss_pred EcCC--CCEEEEEecCCcEEEEeCCCCcccc----ceecc--ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 192 WHPE--HAWLATASRDKTIKVWDLSIKPSLE----YSINT--IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 192 ~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
|+|+ +++|++++.||.|++||+.+++... ....+ ...|.+++|+|++++++ +++ .||.|++||+.+
T Consensus 293 ~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~--~dg~i~iwd~~~ 366 (366)
T 3k26_A 293 FSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILI-AVC--DDASIWRWDRLR 366 (366)
T ss_dssp CEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEE-EEE--TTSEEEEEEC--
T ss_pred EcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEE-EEe--CCCEEEEEEecC
Confidence 9999 9999999999999999999875432 33334 68999999999999755 455 599999999853
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=259.63 Aligned_cols=234 Identities=10% Similarity=0.080 Sum_probs=176.4
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCC--ceeEEecccccceeEEEEEe-------cCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRS--KQERVFNDHKRTVNKVSFHY-------VESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~i~~i~~~~-------~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
++.+|++++.|++|++||....... .....+.+|.+.|++++|+| .++++|++|+.|++|++||++++.++
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 6778999999999999998872211 12334678999999999987 36789999999999999999998888
Q ss_pred eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee------------------------eeccCCCCeEE
Q psy6213 134 KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY------------------------QFTAHSGPIFA 189 (330)
Q Consensus 134 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~------------------------~~~~~~~~i~~ 189 (330)
..+..|..++.+++|+|++..+|++++.||+|++||++++..... ...+|...+.+
T Consensus 180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~ 259 (393)
T 4gq1_A 180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLAN 259 (393)
T ss_dssp EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSE
T ss_pred eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccccee
Confidence 888889999999999999876899999999999999987432111 12356778889
Q ss_pred EEEc-CCCCEEEEEecCCcEEEEeCCCCccccceeccccceEE-------------------EEEcCCCCeEEEEeeccc
Q psy6213 190 CDWH-PEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSR-------------------IKWRPQRKFHLASCSLVV 249 (330)
Q Consensus 190 ~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~~~~~~ 249 (330)
+.|+ |+++.+++++.|+.+++||+...+.......+...+.. +.+.+.+..++++++ .
T Consensus 260 v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs--~ 337 (393)
T 4gq1_A 260 VRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS--Q 337 (393)
T ss_dssp EEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET--T
T ss_pred eeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC--C
Confidence 9987 79999999999999999999876543333332222222 223333455677777 7
Q ss_pred CCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 250 DSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 250 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
||.|++||+.++.. ......|..+|.+++|+|||++||+++.+| +.+|+
T Consensus 338 Dg~V~lwd~~~~~~-~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 338 HGLIQLINTYEKDS-NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp TTEEEEEETTCTTC-CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred CCEEEEEECCCCcE-EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 99999999998876 667778889999999999999999998777 55554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=256.52 Aligned_cols=243 Identities=12% Similarity=0.141 Sum_probs=206.0
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC---CceeEEecccccceeEEEEEecC----C---CEEEEEecC
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR---SKQERVFNDHKRTVNKVSFHYVE----S---NWLISGSQD 119 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~~~~i~~i~~~~~~----~---~~l~~~~~d 119 (330)
+...|++++|+| ++|++|+.||.|++|++..... ......+..|...|.+++|+| + + ++|++++.|
T Consensus 15 h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 15 HDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVATTSFS 90 (397)
T ss_dssp SSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEEEEETT
T ss_pred hhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEEEEcCC
Confidence 445589999987 7999999999999999987220 125777889999999999998 6 8 899999999
Q ss_pred CcEEEEEeecCce-----eeeeecC-----CCCeEEEEEc----CCCCcEEEEEecCCcEEEEecCC------Ccccee-
Q psy6213 120 GTMRLFDIRCQES-----TKIFHSN-----TESVRDVEFN----PHSPYAFASVSENGTIQQWDVRR------PEKCFY- 178 (330)
Q Consensus 120 ~~i~i~d~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~~~~~~~~dg~i~i~d~~~------~~~~~~- 178 (330)
|.|++||+.+++. ...+..| ...|.+++|+ |+++.++++++.||.|++||+++ .. .+.
T Consensus 91 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~ 169 (397)
T 1sq9_A 91 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-TLNW 169 (397)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCC
T ss_pred CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc-eeec
Confidence 9999999999887 7888878 5899999999 99983289999999999999987 33 233
Q ss_pred ----ee-------ccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec---c---ccceEEEEEcCCCCeE
Q psy6213 179 ----QF-------TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN---T---IASVSRIKWRPQRKFH 241 (330)
Q Consensus 179 ----~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l 241 (330)
.+ ..|...|.+++|+|++ +|++++.||.|++||+++.+....... | ...+.+++|+|+++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l 248 (397)
T 1sq9_A 170 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 248 (397)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEE
Confidence 44 4488899999999999 999999999999999998866666655 6 8899999999999975
Q ss_pred EEEeecccC---CeEEEEEccCCCccceEeec-------------CCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 242 LASCSLVVD---SSVNVWDIRRPYIPLASFTE-------------HKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 242 ~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
++++ .| +.|++||+++++. +..+.. |...|.+++|+|++++|++++.||.|++|+..
T Consensus 249 ~~~~---~d~~~g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 249 AIAH---DSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp EEEE---EETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred EEEe---cCCCCceEEEEECCCCcc-cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 5555 48 9999999998865 777877 99999999999999999999999999999864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-37 Score=253.55 Aligned_cols=267 Identities=13% Similarity=0.111 Sum_probs=204.1
Q ss_pred EeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC-----
Q psy6213 12 LKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI----- 84 (330)
Q Consensus 12 ~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----- 84 (330)
+.+++.++++| ||.|++||+++++....+. ...|.++.|+| . +++++.|+.|++|+....
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---------~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---------TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILD 110 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---------EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---------cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEee
Confidence 44567775544 9999999999988776654 12257888998 5 999999999999987631
Q ss_pred -CCCceeEEe-cccccceeEEEEEe-cCCCEEEEEecCCcEEEEEeecCceeeeeec-CCCCeEEEEEcCCCCcEEEEEe
Q psy6213 85 -SRSKQERVF-NDHKRTVNKVSFHY-VESNWLISGSQDGTMRLFDIRCQESTKIFHS-NTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 85 -~~~~~~~~~-~~~~~~i~~i~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
...+.+..+ ..|...|.+++|+| .+++++++++.||.|++||+++++....... +...+.+++|+|++. ++++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~ 189 (343)
T 3lrv_A 111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYS 189 (343)
T ss_dssp TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEEC
T ss_pred cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEc
Confidence 112323333 36678899999997 2578999999999999999999988766643 455799999999998 699999
Q ss_pred cCCcEEEEecCCCccceeeecc-CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec---cccce--EEEEE
Q psy6213 161 ENGTIQQWDVRRPEKCFYQFTA-HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN---TIASV--SRIKW 234 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v--~~~~~ 234 (330)
.||.|++||++++......+.. |.++|.+++|+|++.+|++++ |+.|++||+++.+....... +...+ .+++|
T Consensus 190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (343)
T 3lrv_A 190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI 268 (343)
T ss_dssp TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE
T ss_pred CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEE
Confidence 9999999999985444367777 999999999999999999999 55999999998865433222 22233 46999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec---CCCEEEEeecCCeEeeee
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG---DPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~iw~ 300 (330)
+|++++++++++ .++.+++|++.+...... . .++..++|.| +...+++++.||.+.++-
T Consensus 269 ~~~g~~l~~~s~--~d~~i~v~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 269 DDSGKNMIAYSN--ESNSLTIYKFDKKTKNWT-K----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp CTTSSEEEEEET--TTTEEEEEEECTTTCSEE-E----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred CCCCCEEEEecC--CCCcEEEEEEcccccceE-e----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 999998555443 399999999976654222 2 5678889998 889999999999999874
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=258.50 Aligned_cols=246 Identities=20% Similarity=0.246 Sum_probs=204.1
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC-ceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC--
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRS-KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-- 130 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-- 130 (330)
...++++|+...++++++.||.|++|++....+. .....+.+|...|.+++|+|.++++|++|+.||.|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 4568888833344556789999999999663221 3455677899999999999867899999999999999999987
Q ss_pred -----ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeee--ccCCCCeEEEEEcCCCCEEEEEe
Q psy6213 131 -----ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQF--TAHSGPIFACDWHPEHAWLATAS 203 (330)
Q Consensus 131 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~ 203 (330)
+.+..+.+|...|.+++|+|+++.++++++.||.|++||+++ .+....+ ..|...|.+++|+|++++|++++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-GAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-TEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-CCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 567888899999999999999865899999999999999998 5667777 78999999999999999999999
Q ss_pred cCCcEEEEeCCCCccccce-eccccc-eEEEEEcCCCCeEEEEe--ecccCCeEEEEEccCCCccceEee-cCCCCeEEE
Q psy6213 204 RDKTIKVWDLSIKPSLEYS-INTIAS-VSRIKWRPQRKFHLASC--SLVVDSSVNVWDIRRPYIPLASFT-EHKDVVSGL 278 (330)
Q Consensus 204 ~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~~--~~~~~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~ 278 (330)
.||.|++||+++++..... ..+... +.++.|+|++.+++++. + .++.|++||+++...+..... .|...+.++
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 273 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQELDTSSGVLLP 273 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC--CCceEEEEcCccccCCceEEeccCCCceeEE
Confidence 9999999999988665555 455544 89999999998644442 3 599999999998776454443 577889999
Q ss_pred EEecCCCEEEE-eecCCeEeeeecc
Q psy6213 279 AWRGDPQLFIA-SSRVSIIPRAKNI 302 (330)
Q Consensus 279 ~~~~~~~~l~s-~~~dg~i~iw~~~ 302 (330)
+|+|++++|++ ++.||.|++|+..
T Consensus 274 ~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 274 FFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp EEETTTTEEEEEETTCSCEEEEEEC
T ss_pred EEcCCCCEEEEEEcCCCeEEEEEec
Confidence 99999999975 4579999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=272.36 Aligned_cols=246 Identities=23% Similarity=0.305 Sum_probs=208.1
Q ss_pred ccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC--CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEE
Q psy6213 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR--SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126 (330)
Q Consensus 49 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d 126 (330)
.+...|++++|+|+++++|++|+.|+.|++|++..... ......+.+|...|.+++|+| ++++|++|+.|+.|++||
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd 458 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWD 458 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEE
Confidence 44556899999995678999999999999999976322 234567889999999999998 899999999999999999
Q ss_pred eecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccce--eeeccCCCCeEEEEEcCCC--CEEEEE
Q psy6213 127 IRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF--YQFTAHSGPIFACDWHPEH--AWLATA 202 (330)
Q Consensus 127 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~i~~~~~~~~~--~~l~~~ 202 (330)
+.+++....+.+|...|.+++|+|+++ .+++++.|++|++||........ ....+|...|.+++|+|++ ..++++
T Consensus 459 ~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 459 LAAGVSTRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred CCCCcceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence 999999999999999999999999998 59999999999999987522111 1224688899999999986 689999
Q ss_pred ecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 203 SRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 203 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
+.|+.|++||+++.+.......|...|.+++|+|++++ +++++ .|+.|++||+++++. +..+. +...|.+++|+|
T Consensus 538 s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~-l~sg~--~Dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~~sp 612 (694)
T 3dm0_A 538 SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL-CASGG--KDGVVLLWDLAEGKK-LYSLE-ANSVIHALCFSP 612 (694)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTSBCEEEETTTTEE-EECCB-CSSCEEEEEECS
T ss_pred eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE-EEEEe--CCCeEEEEECCCCce-EEEec-CCCcEEEEEEcC
Confidence 99999999999988777777788999999999999997 55555 699999999998865 55554 456799999999
Q ss_pred CCCEEEEeecCCeEeeeecc
Q psy6213 283 DPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 283 ~~~~l~s~~~dg~i~iw~~~ 302 (330)
++.+|++++ |+.|++|+..
T Consensus 613 ~~~~l~~~~-~~~i~iwd~~ 631 (694)
T 3dm0_A 613 NRYWLCAAT-EHGIKIWDLE 631 (694)
T ss_dssp SSSEEEEEE-TTEEEEEETT
T ss_pred CCcEEEEEc-CCCEEEEECC
Confidence 998887665 5669999864
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=262.03 Aligned_cols=260 Identities=11% Similarity=0.021 Sum_probs=202.9
Q ss_pred CcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 3 YLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
-...|.+++|+|||++ ++++ |++|+ |...++. +.. +...|.+++|+| ++ .++.+.+|+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~g-------h~~~v~~V~FsP-dg-------~~~~~~~~~ 73 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INC-------NSKNLFHVKEFP-LE-------FENKLDFEL 73 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSS-------BGGGTEEEEEEC-CC-------CCCTTTTSC
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecC-------CCccEEEEEECC-CC-------CcceEEEEe
Confidence 3578999999999999 5555 99999 6544432 222 334469999999 76 456655555
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCC-----CeEEEEEcCCCCcE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTE-----SVRDVEFNPHSPYA 155 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~ 155 (330)
.+. .....+ .|...|.+++|+| ++.+||+++.||.|++||.++ .+..+. |.. .+.+++|+|+|+ +
T Consensus 74 ~~~----~~~~~~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~-~ 143 (588)
T 2j04_A 74 AQQ----NGLLNS-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIES-S 143 (588)
T ss_dssp CCS----SCSSTT-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSS-C
T ss_pred CCC----ceEeec-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCC-E
Confidence 432 222222 4578999999999 999999999999999999543 555566 554 499999999999 5
Q ss_pred EEEEecCCcEEEEecCCCcc------ceeee----ccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc---cce
Q psy6213 156 FASVSENGTIQQWDVRRPEK------CFYQF----TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---EYS 222 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~~~------~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~ 222 (330)
|++|+.||+|++||+..+.. .+..+ .+|...|.+++|+|+| +++++.|+.+++||+...... ...
T Consensus 144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeee
Confidence 99999999999999987421 24555 6677899999999999 888999999999999887532 122
Q ss_pred -eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEE--ecCCCEEEEeecCCeEeee
Q psy6213 223 -INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAW--RGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 223 -~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~iw 299 (330)
..|...|.+++|+ ++. +++++ ++.|++||+.+++. .....+|.+.|.+++| +||+..|+++++||+ ++|
T Consensus 222 ~~~h~~~V~svaFs--g~~-LASa~---~~tIkLWd~~~~~~-~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw 293 (588)
T 2j04_A 222 QNASRRKITDLKIV--DYK-VVLTC---PGYVHKIDLKNYSI-SSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVL 293 (588)
T ss_dssp ECCCSSCCCCEEEE--TTE-EEEEC---SSEEEEEETTTTEE-EEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred cccccCcEEEEEEE--CCE-EEEEe---CCeEEEEECCCCeE-EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence 2567889999999 564 66666 79999999998764 2333389999999999 999999999999999 999
Q ss_pred ecc
Q psy6213 300 KNI 302 (330)
Q Consensus 300 ~~~ 302 (330)
...
T Consensus 294 ~~d 296 (588)
T 2j04_A 294 LED 296 (588)
T ss_dssp ESS
T ss_pred eec
Confidence 754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=247.25 Aligned_cols=241 Identities=15% Similarity=0.286 Sum_probs=209.5
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
+...|++++|+| ++++|++++.||.|++||+.+ .+....+..|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 31 h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 105 (369)
T 3zwl_B 31 HERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLN---GERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSN 105 (369)
T ss_dssp CSSCEEEEEECT-TSCEEEEEESSSCEEEEETTT---CCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT
T ss_pred eeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCC---chhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Confidence 344589999999 999999999999999999988 788888999999999999998 899999999999999999999
Q ss_pred CceeeeeecCCCCeEEEEEcCCCCcEEEEEecC-----CcEEEEecCCCcc----------ceeeeccCCC--CeEEEEE
Q psy6213 130 QESTKIFHSNTESVRDVEFNPHSPYAFASVSEN-----GTIQQWDVRRPEK----------CFYQFTAHSG--PIFACDW 192 (330)
Q Consensus 130 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~----------~~~~~~~~~~--~i~~~~~ 192 (330)
++.+..+. +...+.+++|+|+++ .+++++.+ |.|++||++.... ....+..|.. .+.+++|
T Consensus 106 ~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 106 GQCVATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CcEEEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 99988888 888999999999999 58888888 9999999986432 3344455655 8999999
Q ss_pred cCCCCEEEEEecCCcEEEEeCCC-CccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC
Q psy6213 193 HPEHAWLATASRDKTIKVWDLSI-KPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH 271 (330)
Q Consensus 193 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 271 (330)
+|++++|++++.||.|++||+++ .+.......+...+.+++|+|+++++++++ .|+.|++||+++++. ...+. +
T Consensus 184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~-~~~~~-~ 258 (369)
T 3zwl_B 184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS---RDTNSFLVDVSTLQV-LKKYE-T 258 (369)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCE-EEEEE-C
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec---CCceEEEEECCCCce-eeeec-C
Confidence 99999999999999999999998 445556666889999999999999755554 599999999998875 55554 7
Q ss_pred CCCeEEEEEecCCCEEEEeecCC--------------eEeeeecc
Q psy6213 272 KDVVSGLAWRGDPQLFIASSRVS--------------IIPRAKNI 302 (330)
Q Consensus 272 ~~~v~~~~~~~~~~~l~s~~~dg--------------~i~iw~~~ 302 (330)
...+..++|+|+++++++++.++ .+++|+..
T Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 303 (369)
T 3zwl_B 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI 303 (369)
T ss_dssp SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence 78999999999999999999998 78888753
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=252.78 Aligned_cols=243 Identities=16% Similarity=0.312 Sum_probs=200.2
Q ss_pred cccceeeeeecccCC-cEEEEEcC---CCcEEEEECCCCCCCceeEE-ecccccceeEEEEEecC--CCEEEEEecCCcE
Q psy6213 50 LNFSCNDVAWSCIEE-NHIATGAT---NGAVVVWNLGQISRSKQERV-FNDHKRTVNKVSFHYVE--SNWLISGSQDGTM 122 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~-~~l~~~~~---dg~i~iw~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~--~~~l~~~~~d~~i 122 (330)
+...|.+++|+| ++ .++++|+. ||.|++||+.+ .+.... ...|...|.+++|+|.. +.+|++|+.||.|
T Consensus 17 h~~~v~~~~~~p-~~~~l~~~~s~~~~d~~v~iw~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 17 FNYTVFDCKWVP-CSAKFVTMGNFARGTGVIQLYEIQH---GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp CSSCEEEEEECT-TSSEEEEEEC--CCCEEEEEEEECS---SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred CCCceEEEEEcC-CCceEEEecCccCCCcEEEEEeCCC---CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 345589999999 66 55567766 89999999987 333322 33789999999999832 6999999999999
Q ss_pred EEEEeecCc-eeeeeecCCCCeEEEEE------cCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCC----CeEEEE
Q psy6213 123 RLFDIRCQE-STKIFHSNTESVRDVEF------NPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSG----PIFACD 191 (330)
Q Consensus 123 ~i~d~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~i~~~~ 191 (330)
++||+.+++ .+..+..|...|.++.| +|+++ .+++++.||.|++||+++...+...+..|.+ .+.+++
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence 999999888 88889999999999955 67887 6999999999999999986556777766554 788888
Q ss_pred ----EcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcC---CCCeEEEEeecccCCeEEEEEccCCCcc
Q psy6213 192 ----WHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRP---QRKFHLASCSLVVDSSVNVWDIRRPYIP 264 (330)
Q Consensus 192 ----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~~~~i~i~d~~~~~~~ 264 (330)
|+|++++|++++.||.|++||+++++. .....+...+.+++|+| ++.+++++ + .||.|++||++++..
T Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~-~--~dg~i~i~d~~~~~~- 246 (357)
T 3i2n_A 172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWETNIKNGVCSLEFDRKDISMNKLVAT-S--LEGKFHVFDMRTQHP- 246 (357)
T ss_dssp EECCCC-CCCEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEEEEESCSSSSCCEEEEE-E--STTEEEEEEEEEEET-
T ss_pred EEeccCCCCCEEEEEccCCeEEEEECccCce-eeecCCCCceEEEEcCCCCCCCCEEEEE-C--CCCeEEEEeCcCCCc-
Confidence 788999999999999999999998854 44566788999999999 88875555 4 599999999987654
Q ss_pred ceEe-----ecCCCCeEEEEEecCCC-EEEEeecCCeEeeeecc
Q psy6213 265 LASF-----TEHKDVVSGLAWRGDPQ-LFIASSRVSIIPRAKNI 302 (330)
Q Consensus 265 ~~~~-----~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iw~~~ 302 (330)
...+ .+|...|.+++|+|+++ +|++++.||.|++|+..
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 3333 38999999999999998 89999999999999864
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=254.25 Aligned_cols=239 Identities=15% Similarity=0.217 Sum_probs=196.1
Q ss_pred cccceeeeeecccCC-cEEEEEcCCCcEEEEECCCCCCCceeEEe--cccccceeEEEEEecCCCEEEEEecCCcEEEEE
Q psy6213 50 LNFSCNDVAWSCIEE-NHIATGATNGAVVVWNLGQISRSKQERVF--NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d 126 (330)
+...|.+++|+| ++ ++|++|+.||.|++||+.+ ......+ .+|...|.+++|+|.++++|++++.|+.|++||
T Consensus 72 h~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 72 FDRRVTSLEWHP-THPTTVAVGSKGGDIILWDYDV---QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp CSSCEEEEEECS-SCTTEEEEEEBTSCEEEEETTS---TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred CCCCEEEEEECC-CCCCEEEEEcCCCeEEEEeCCC---cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 345589999999 76 9999999999999999987 4444444 369999999999986679999999999999999
Q ss_pred eecCceeeeeecC---CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCC-EEEEE
Q psy6213 127 IRCQESTKIFHSN---TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHA-WLATA 202 (330)
Q Consensus 127 ~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 202 (330)
+++ +....+..+ ...|.+++|+|+++ .+++++.||.|++||++ ...+..+..|...|.+++|+|+++ +|+++
T Consensus 148 ~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 223 (383)
T 3ei3_B 148 FSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATS 223 (383)
T ss_dssp TTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEE
T ss_pred CCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEE
Confidence 985 455555443 47899999999998 69999999999999995 567788889999999999999998 99999
Q ss_pred ecCCcEEEEeCCCCc---cccceeccccceEEEEEcC-CCCeEEEEeecccCCeEEEEEccCCCccceEeecCC------
Q psy6213 203 SRDKTIKVWDLSIKP---SLEYSINTIASVSRIKWRP-QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK------ 272 (330)
Q Consensus 203 ~~dg~i~i~d~~~~~---~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~------ 272 (330)
+.|+.|++||+++.+ .......+...+.+++|+| ++.+++ +++ .|+.|++||++++.. ...+..|.
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~-~~~--~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 299 (383)
T 3ei3_B 224 SVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL-TTD--QRNEIRVYSSYDWSK-PDQIIIHPHRQFQH 299 (383)
T ss_dssp ETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE-EEE--SSSEEEEEETTBTTS-CSEEEECCBCCCTT
T ss_pred eCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE-EEc--CCCcEEEEECCCCcc-cccccccccccccc
Confidence 999999999998742 2333446889999999999 999755 444 599999999998765 44444332
Q ss_pred -----------CCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 273 -----------DVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 273 -----------~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
..+..++|+|++++ +++.||.|++|+..
T Consensus 300 ~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 300 LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDAN 338 (383)
T ss_dssp SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence 34455677777776 78899999999854
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=252.79 Aligned_cols=255 Identities=12% Similarity=0.247 Sum_probs=206.0
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.+.|++++|+|+|+++++| ||.|+|||+++++....+..|... +.+++| ++..|++|+.|+.+++|
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~-------v~~~s~---~~~~l~sgs~d~~i~~~ 214 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-------VGSLSW---NSYILSSGSRSGHIHHH 214 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-------EEEEEE---ETTEEEEEETTSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCc-------eEEEee---CCCEEEEEeCCCceeEe
Confidence 477889999999999996665 999999999999887776655432 466666 46899999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce----eeeeecCCCCeEEEEEcCCCCcE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES----TKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
|.... ......+.+|...+..+.|+| ++.++++++.|+.+++||..+++. +.....|...|.+++|+|.+..+
T Consensus 215 d~~~~--~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~ 291 (420)
T 4gga_A 215 DVRVA--EHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 291 (420)
T ss_dssp ETTSS--SCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred eeccc--ceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE
Confidence 98763 456677889999999999998 899999999999999999987653 45566788999999999998887
Q ss_pred EEEE--ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe--cCCcEEEEeCCCCccccceeccccceEE
Q psy6213 156 FASV--SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS--RDKTIKVWDLSIKPSLEYSINTIASVSR 231 (330)
Q Consensus 156 ~~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 231 (330)
++++ +.|+.|++||+++ +.....+.. ...+.++.|+|+++.+++++ .|+.|++||+.+++.+.....|...|.+
T Consensus 292 la~~~gs~D~~I~iwd~~t-~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~ 369 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCS-GACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS 369 (420)
T ss_dssp EEEEECTTTCEEEEEETTT-TEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEEeecCCCEEEEEeCCc-cccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence 7764 4799999999998 556666654 46789999999999888776 7899999999999888778889999999
Q ss_pred EEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCe
Q psy6213 232 IKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275 (330)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v 275 (330)
++|+|+|++ +++++ .|++|++||+..... ......+...+
T Consensus 370 l~~spdg~~-l~S~s--~D~tvriWdv~~~~~-~~~~~~~~~~~ 409 (420)
T 4gga_A 370 LTMSPDGAT-VASAA--ADETLRLWRCFELDP-ARRREREKASA 409 (420)
T ss_dssp EEECTTSSC-EEEEE--TTTEEEEECCSCSSC-C----------
T ss_pred EEEcCCCCE-EEEEe--cCCeEEEEECCCCCc-cchhhhccCCc
Confidence 999999997 55555 699999999976543 44444444333
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=259.99 Aligned_cols=244 Identities=18% Similarity=0.263 Sum_probs=192.7
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
...|++++|+|.++++||+|+.||.|+|||+.... ......+.+|.+.|++++|+|.++++|++|+.||+|++||++++
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 34589999999667899999999999999998632 33444567899999999999878899999999999999999865
Q ss_pred ceeeeeec--CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCC-EEEEEecCCc
Q psy6213 131 ESTKIFHS--NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHA-WLATASRDKT 207 (330)
Q Consensus 131 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~ 207 (330)
........ +...+.+++|+|++. +|++|+.||.|++||++. +.+..+.+|...|.+++|+|++. +|++++.|+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 198 ILRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQT 274 (435)
T ss_dssp EEEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred ceeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCc--ceeEEEecccceEEeeeecCCCceEEEEecCcce
Confidence 44333322 334678999999998 699999999999999974 45678889999999999999876 7889999999
Q ss_pred EEEEeCCCCccc---cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCC------CeEEE
Q psy6213 208 IKVWDLSIKPSL---EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKD------VVSGL 278 (330)
Q Consensus 208 i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~------~v~~~ 278 (330)
|++||+++.+.. .....|...|.+++|+|++++|+ +++ .|+.|++||+.++.. ...+..|.. .+...
T Consensus 275 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~-s~~--~D~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL-TTD--QKSEIRVYSASQWDC-PLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE-EEE--SSSCEEEEESSSSSS-EEEECCCCCCCCSSSCCCBC
T ss_pred eeEEecccccccceEEEeeeccccccceeECCCCCeeE-EEc--CCCEEEEEECCCCcc-ceEEecccccccccceeEEE
Confidence 999999876543 33356788999999999999855 455 599999999998876 444444432 23445
Q ss_pred EEecCCCEEEEee------------cCCeEeeeecc
Q psy6213 279 AWRGDPQLFIASS------------RVSIIPRAKNI 302 (330)
Q Consensus 279 ~~~~~~~~l~s~~------------~dg~i~iw~~~ 302 (330)
.|+|++..+++++ .++.|++|+..
T Consensus 351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~ 386 (435)
T 4e54_B 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN 386 (435)
T ss_dssp EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence 6777777766654 23578899753
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-36 Score=248.00 Aligned_cols=241 Identities=12% Similarity=0.096 Sum_probs=202.8
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCC-EEEEEecCCcEEEEEe-e
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESN-WLISGSQDGTMRLFDI-R 128 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~d~~i~i~d~-~ 128 (330)
...|.+++|+| ++++|++++.||.|++|++...........+..|...|.+++|+| +++ +|++|+.||.|++||+ .
T Consensus 11 ~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 11 KDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp SSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSS
T ss_pred CCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEecc
Confidence 44579999999 999999999999999999987432234555668999999999999 789 9999999999999999 7
Q ss_pred cCceeeeeec--CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCC--------ccceeeeccCCCCeEEEEEcCCCCE
Q psy6213 129 CQESTKIFHS--NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP--------EKCFYQFTAHSGPIFACDWHPEHAW 198 (330)
Q Consensus 129 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~ 198 (330)
+++. ..+.. |...|.+++|+| +. .+++++.|+.|++||+++. .+++..+. |...+.+++|+|++
T Consensus 89 ~~~~-~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-- 162 (342)
T 1yfq_A 89 SPSF-QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-- 162 (342)
T ss_dssp SSSE-EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--
T ss_pred CCce-EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--
Confidence 6654 67777 999999999999 66 6999999999999999851 23444555 88999999999887
Q ss_pred EEEEecCCcEEEEeCCC-Ccc--ccceeccccceEEEEEcC-CCCeEEEEeecccCCeEEEEEccCC-----CccceEee
Q psy6213 199 LATASRDKTIKVWDLSI-KPS--LEYSINTIASVSRIKWRP-QRKFHLASCSLVVDSSVNVWDIRRP-----YIPLASFT 269 (330)
Q Consensus 199 l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~i~i~d~~~~-----~~~~~~~~ 269 (330)
+++++.|+.|++||++. ... ......+...+.+++|+| +++++ ++++ .+|.+++|+++.. ..+...+.
T Consensus 163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l-~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY-ACSS--IDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEE-EEEE--TTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEE-EEEe--cCCcEEEEEEcCCCcccccccceeee
Confidence 99999999999999998 533 234445678899999999 99874 4555 5999999999877 34477888
Q ss_pred cCCC---------CeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 270 EHKD---------VVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 270 ~~~~---------~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.|.. .|.+++|+|++++|++++.||.|++|+..
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 8865 99999999999999999999999999865
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=276.32 Aligned_cols=245 Identities=19% Similarity=0.289 Sum_probs=209.7
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecC--CCEEEEEecCCcEEEEEee
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE--SNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~l~~~~~d~~i~i~d~~ 128 (330)
...|++++|+| ++++|++|+.||.|++||+.. ........+.+|...|.+++|+| + +++|++|+.||.|++||+.
T Consensus 9 ~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~-~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 9 NELIHDAVLDY-YGKRLATCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp CCCEEEECCCS-SSCCEEEEETTTEEEEEEEET-TEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred cceeEEEEECC-CCCeEEEEECCCcEEEEecCC-CCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence 34579999999 999999999999999999874 12567778889999999999997 5 8999999999999999999
Q ss_pred cCc--eeeeeecCCCCeEEEEEcCC--CCcEEEEEecCCcEEEEecCCCc-cceeeeccCCCCeEEEEEcC---------
Q psy6213 129 CQE--STKIFHSNTESVRDVEFNPH--SPYAFASVSENGTIQQWDVRRPE-KCFYQFTAHSGPIFACDWHP--------- 194 (330)
Q Consensus 129 ~~~--~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~--------- 194 (330)
+++ ....+..|...|.+++|+|+ +. .+++++.||.|++||+++.. .....+..|...|.+++|+|
T Consensus 86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 86 NGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred CCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence 887 67777889999999999999 77 69999999999999998752 33456678999999999999
Q ss_pred ----CCCEEEEEecCCcEEEEeCCCCcc----ccceeccccceEEEEEcCC---CCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 195 ----EHAWLATASRDKTIKVWDLSIKPS----LEYSINTIASVSRIKWRPQ---RKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 195 ----~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
++.++++++.||.|++||+++... ......|..+|.+++|+|+ +++ +++++ .||.|++||++++..
T Consensus 165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~-l~s~s--~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY-LASVS--QDRTCIIWTQDNEQG 241 (753)
T ss_dssp --CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE-EEEEE--SSSCEEEEEESSSSS
T ss_pred ccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCE-EEEEe--cCCEEEEecCCCCCC
Confidence 589999999999999999987743 3344567889999999999 776 55555 699999999988642
Q ss_pred ----cceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 264 ----PLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 264 ----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.......|...|++++|+|++++|++++.||.|++|+..
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 133345688899999999999999999999999999865
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=242.68 Aligned_cols=244 Identities=21% Similarity=0.316 Sum_probs=209.5
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC--CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR--SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~ 128 (330)
...|++++|+|+++++|++|+.||+|++||+..... ..+...+.+|...|.+++|+| ++++|++++.|+.|++|+..
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccceEEeec
Confidence 344799999995578999999999999999976332 235667889999999999998 89999999999999999999
Q ss_pred cCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCC--CEEEEEecCC
Q psy6213 129 CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH--AWLATASRDK 206 (330)
Q Consensus 129 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg 206 (330)
..........+...+....++++++ .+++++.|+.+++||+............|...+..++|++++ .++++++.|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~ 195 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 195 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTS
T ss_pred ccceeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCC
Confidence 9888888888888999999999998 589999999999999987666666777899999999998864 5789999999
Q ss_pred cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCE
Q psy6213 207 TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQL 286 (330)
Q Consensus 207 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 286 (330)
.|++||+++.+.......|..+|.+++|+|++++ +++++ .|+.|++||+++.+. +..+.. ...|.+++|+|++.+
T Consensus 196 ~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s--~Dg~i~iwd~~~~~~-~~~~~~-~~~v~~~~~~~~~~~ 270 (340)
T 4aow_A 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL-CASGG--KDGQAMLWDLNEGKH-LYTLDG-GDIINALCFSPNRYW 270 (340)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTCEEEEEETTTTEE-EEEEEC-SSCEEEEEECSSSSE
T ss_pred EEEEEECCCCceeeEecCCCCcEEEEEECCCCCE-EEEEe--CCCeEEEEEeccCce-eeeecC-CceEEeeecCCCCce
Confidence 9999999998777777788999999999999997 55555 699999999998865 556654 468999999998765
Q ss_pred EEEeecCCeEeeeecc
Q psy6213 287 FIASSRVSIIPRAKNI 302 (330)
Q Consensus 287 l~s~~~dg~i~iw~~~ 302 (330)
++++.|+.|++|+..
T Consensus 271 -~~~~~d~~i~iwd~~ 285 (340)
T 4aow_A 271 -LCAATGPSIKIWDLE 285 (340)
T ss_dssp -EEEEETTEEEEEETT
T ss_pred -eeccCCCEEEEEECC
Confidence 556789999999854
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=276.30 Aligned_cols=247 Identities=20% Similarity=0.291 Sum_probs=203.9
Q ss_pred CCcccceEEEEeeCCCeee-cC-CCeEEEEEcCCc--ceeeeeceeeccccccccceeeeeecccC--CcEEEEEcCCCc
Q psy6213 2 AYLSPVHKHGLKADNGLAQ-PS-RNVFKIFLIKDT--EFVETHNLRVGKNINLNFSCNDVAWSCIE--ENHIATGATNGA 75 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~-~g-d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~ 75 (330)
+|.++|++++|+|+|++++ ++ ||.|++||+.++ +....+..| ...|.+++|+| + +++|++|+.||.
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h-------~~~V~~l~~s~-~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH-------EGPVWRVDWAH-PKFGTILASCSYDGK 78 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCC-------SSCEEEEEECC-TTSCSEEEEEETTSC
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCC-------cCceEEEEecC-CCCCCEEEEEeCCCe
Confidence 6999999999999999944 44 999999999854 333333333 34479999998 6 899999999999
Q ss_pred EEEEECCCCCCCceeEEecccccceeEEEEEecC--CCEEEEEecCCcEEEEEeecCc--eeeeeecCCCCeEEEEEcCC
Q psy6213 76 VVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE--SNWLISGSQDGTMRLFDIRCQE--STKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~ 151 (330)
|++||+.+. .......+..|...|.+++|+| + ++++++|+.||.|++||++++. ....+..|...|.+++|+|.
T Consensus 79 I~vwd~~~~-~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 79 VLIWKEENG-RWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp EEEEEEETT-EEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred EEEEECCCC-cccccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 999999872 1236677888999999999999 6 8999999999999999998773 34556778999999999994
Q ss_pred -------------CCcEEEEEecCCcEEEEecCCCc---cceeeeccCCCCeEEEEEcCC---CCEEEEEecCCcEEEEe
Q psy6213 152 -------------SPYAFASVSENGTIQQWDVRRPE---KCFYQFTAHSGPIFACDWHPE---HAWLATASRDKTIKVWD 212 (330)
Q Consensus 152 -------------~~~~~~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d 212 (330)
+. .+++|+.||.|++||+++.. .....+.+|...|.+++|+|+ +++|++++.||.|++||
T Consensus 157 ~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 157 TIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp C---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 66 69999999999999998743 445677889999999999999 89999999999999999
Q ss_pred CCCCc-----cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 213 LSIKP-----SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 213 ~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
++++. .......+...+.+++|+|+++++++++ .||.|++|+++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s---~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG---GDNKVTLWKENLEG 287 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC---SSSCEECCBCCSSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc---CCCEEEEEecCCCC
Confidence 98864 2333344778899999999999855544 59999999998543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=260.91 Aligned_cols=270 Identities=13% Similarity=0.207 Sum_probs=205.9
Q ss_pred EeeCCCeeecCCCeEEEEEcCCcceeeee-ceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCC---CCCC
Q psy6213 12 LKADNGLAQPSRNVFKIFLIKDTEFVETH-NLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ---ISRS 87 (330)
Q Consensus 12 ~s~~~~~~~~gd~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~ 87 (330)
|+|+++.++.+. .|+.. ++....+ ..| ...|++++|+|.++++|++|+.||.|++||+.+ ....
T Consensus 35 f~~~~~~~~~~~----~w~~~-g~~~~~~~~~h-------~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 102 (437)
T 3gre_A 35 FGPIQEIVRSPN----MGNLR-GKLIATLMENE-------PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY 102 (437)
T ss_dssp GCCCCCCCCCCC----GGGCC-CCEEEEECTTT-------TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC
T ss_pred cCCccccccccc----ccccc-ceEEeeeccCC-------CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc
Confidence 455555533332 37633 4444444 322 334799999986788999999999999999865 2212
Q ss_pred ceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee---cCceeeeeec------------CCCCeEEEE--EcC
Q psy6213 88 KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR---CQESTKIFHS------------NTESVRDVE--FNP 150 (330)
Q Consensus 88 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~------------~~~~v~~~~--~~~ 150 (330)
.....+ .|...|.+++|+| ++++|++++.||.|++||++ +++....+.. +...+.++. +++
T Consensus 103 ~~~~~~-~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 103 SSSLTY-DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp SCSEEE-ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred ceeeec-cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence 223333 4899999999998 89999999999999999995 5554443332 345566666 456
Q ss_pred CCCcEEEEEecCCcEEEEecCCCccceeeecc--CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee-cccc
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTA--HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI-NTIA 227 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~ 227 (330)
++. ++++++.||.|++||+++ .+.+..+.. |.+.|++++|+|++++|++++.||.|++||+++++...... .+..
T Consensus 181 ~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 258 (437)
T 3gre_A 181 EKS-LLVALTNLSRVIIFDIRT-LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA 258 (437)
T ss_dssp SCE-EEEEEETTSEEEEEETTT-CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE
T ss_pred CCC-EEEEEeCCCeEEEEeCCC-CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC
Confidence 777 699999999999999998 666777777 88999999999999999999999999999999875555443 6777
Q ss_pred ceEEEEEcC----CCCeEEEEeecccCCeEEEEEccCCCccceEeec--------------------------CCCCeEE
Q psy6213 228 SVSRIKWRP----QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE--------------------------HKDVVSG 277 (330)
Q Consensus 228 ~v~~~~~~~----~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--------------------------~~~~v~~ 277 (330)
+|.+++|+| ++.+ +++++ .|+.|++||+++++. +..+.+ |...|.+
T Consensus 259 ~v~~~~~~~~~s~~~~~-l~s~~--~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVI-VVGGS--SKTFLTIWNFVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp EEEEEEECTTTCTTEEE-EEEES--TTEEEEEEETTTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred ceEEEEeccccCCCccE-EEEEc--CCCcEEEEEcCCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 999996654 5665 56665 699999999998764 444432 5667899
Q ss_pred EEEecCCCEEEEeecCCeEeeeecc
Q psy6213 278 LAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 278 ~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
++|+ ++++|++++.||.|++|+..
T Consensus 335 l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 335 ISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred EEEC-CceEEEecCCCCeEEEEECC
Confidence 9999 77999999999999999854
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=236.86 Aligned_cols=232 Identities=16% Similarity=0.231 Sum_probs=200.3
Q ss_pred ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 51 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
...|.+++| | ++++|++|+.||.|++||+.+ ......+..|...|.+++|+| +++++++++.||.|++|++...
T Consensus 18 ~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~ 91 (313)
T 3odt_A 18 DQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDD---QWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFAT 91 (313)
T ss_dssp SSCEEEEEE-E-ETTEEEEEETTSEEEEEEESS---SEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCC
T ss_pred CCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCC---CEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeec
Confidence 344799999 8 899999999999999999977 677788888999999999998 8999999999999999998654
Q ss_pred ---ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEecCC
Q psy6213 131 ---ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRDK 206 (330)
Q Consensus 131 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg 206 (330)
+....+..|...|.+++|. ++ .+++++.||.|++|| . ......+..|...+.++.|.| +++++++++.||
T Consensus 92 ~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 165 (313)
T 3odt_A 92 SGEDPLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWK--E-GSLVYNLQAHNASVWDAKVVSFSENKFLTASADK 165 (313)
T ss_dssp TTSCC-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEE--T-TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTS
T ss_pred CCCCcccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEc--C-CcEEEecccCCCceeEEEEccCCCCEEEEEECCC
Confidence 5577788899999999993 44 699999999999999 2 566778888999999999998 899999999999
Q ss_pred cEEEEeCCCCcccccee-ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCC
Q psy6213 207 TIKVWDLSIKPSLEYSI-NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ 285 (330)
Q Consensus 207 ~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 285 (330)
.|++||... ...... .+...+.+++|+|++. +++++ .++.|++||+++++. +..+..|...|.+++|+|++
T Consensus 166 ~i~i~d~~~--~~~~~~~~~~~~i~~~~~~~~~~-~~~~~---~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~- 237 (313)
T 3odt_A 166 TIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGH-FISCS---NDGLIKLVDMHTGDV-LRTYEGHESFVYCIKLLPNG- 237 (313)
T ss_dssp CEEEEETTE--EEEEECSSCSSCEEEEEEEETTE-EEEEE---TTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTS-
T ss_pred CEEEEecCc--eEEEEeccCcccEEEEEEcCCCe-EEEcc---CCCeEEEEECCchhh-hhhhhcCCceEEEEEEecCC-
Confidence 999999433 233333 3788999999999998 45554 599999999998865 78889999999999999999
Q ss_pred EEEEeecCCeEeeeecc
Q psy6213 286 LFIASSRVSIIPRAKNI 302 (330)
Q Consensus 286 ~l~s~~~dg~i~iw~~~ 302 (330)
.|++++.||.|++|+..
T Consensus 238 ~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 238 DIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp CEEEEETTSEEEEECTT
T ss_pred CEEEEecCCEEEEEECC
Confidence 68999999999999854
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=247.81 Aligned_cols=285 Identities=13% Similarity=0.070 Sum_probs=224.0
Q ss_pred cccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
...+.+++|+|++.+++++ ++.|++||+.+++........ ....+...+.+++|+| ++.++++++.|+.|++||+
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPE--KYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCH--HHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEET
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcc--cccccCCceeEEEEcC-CCEEEEEECCCCEEEEEEC
Confidence 3457799999977775554 889999999998876533221 1122334578999998 9999999999999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEE-EEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWL-ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
++ .+....+..|...+.+++|+| +++.+ ++++.|+.|++||+++++.+..+.. ...+.+++|+|+++. +++++
T Consensus 199 ~~---~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~-l~~~~ 272 (433)
T 3bws_A 199 KT---LAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKE-LYIAQ 272 (433)
T ss_dssp TT---CCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSE-EEEEE
T ss_pred CC---ceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCE-EEEEE
Confidence 87 677777888899999999998 66666 4555899999999999988877764 456999999999985 66665
Q ss_pred --------cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCE-EEEEecCCcEEEEeCCCCccccceeccccceEE
Q psy6213 161 --------ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAW-LATASRDKTIKVWDLSIKPSLEYSINTIASVSR 231 (330)
Q Consensus 161 --------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 231 (330)
.||.|++||+++ .+....+ .+...+.+++|+|+++. +++++.|+.|++||+.+++.. ....+...+.+
T Consensus 273 ~~~~~~~~~dg~i~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-~~~~~~~~~~~ 349 (433)
T 3bws_A 273 FSASNQESGGGRLGIYSMDK-EKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ-KSIPVFDKPNT 349 (433)
T ss_dssp EESCTTCSCCEEEEEEETTT-TEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE-EEEECSSSEEE
T ss_pred CCCCccccCCCeEEEEECCC-CcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE-EEecCCCCCCe
Confidence 488999999987 4444443 45668899999999975 466689999999999987443 34456778999
Q ss_pred EEEcCCCCeEEEEeecc------------cCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeec-CCeEee
Q psy6213 232 IKWRPQRKFHLASCSLV------------VDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR-VSIIPR 298 (330)
Q Consensus 232 ~~~~~~~~~l~~~~~~~------------~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~i 298 (330)
++|+|+++++++++... .||.|++||+.+++. +..+.. ...+.+++|+|++++|++++. |+.|++
T Consensus 350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV-KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE-EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 99999999866665410 046999999988765 555555 457999999999999998875 999999
Q ss_pred eecc
Q psy6213 299 AKNI 302 (330)
Q Consensus 299 w~~~ 302 (330)
|+..
T Consensus 428 ~~~~ 431 (433)
T 3bws_A 428 YRRD 431 (433)
T ss_dssp EEET
T ss_pred EEec
Confidence 9754
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=246.12 Aligned_cols=249 Identities=10% Similarity=0.054 Sum_probs=187.4
Q ss_pred CcccceEEEEeeCC---------CeeecC--CCeEEEEEcCCcceeeeece--eeccccccccceeeeeecccCCcEEEE
Q psy6213 3 YLSPVHKHGLKADN---------GLAQPS--RNVFKIFLIKDTEFVETHNL--RVGKNINLNFSCNDVAWSCIEENHIAT 69 (330)
Q Consensus 3 H~~~v~~~~~s~~~---------~~~~~g--d~~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~ 69 (330)
|...|.+++++++. ..+..+ |+.+++|++...+....... ...........+.+++|+| +++++++
T Consensus 72 ~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~ 150 (365)
T 4h5i_A 72 NDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAI 150 (365)
T ss_dssp TSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEE
T ss_pred CCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEE
Confidence 56677777765431 112334 88999999876542221111 1111122233468899999 9998765
Q ss_pred E--cCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeee--eecCCCCeEE
Q psy6213 70 G--ATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI--FHSNTESVRD 145 (330)
Q Consensus 70 ~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~v~~ 145 (330)
+ +.|+.|++||+.+ .+....+. |...|.+++|+| +++++++++.+ .+.+|+..+++.+.. ...|...|.+
T Consensus 151 as~~~d~~i~iwd~~~---~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~ 224 (365)
T 4h5i_A 151 ASSKVPAIMRIIDPSD---LTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSK 224 (365)
T ss_dssp EESCSSCEEEEEETTT---TEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEE
T ss_pred EECCCCCEEEEeECCC---CcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEE
Confidence 4 4789999999988 66666664 778899999999 89999999855 677777776765533 3457788999
Q ss_pred EEEcCCCCcEEEEEecCC----cEEEEecCCCccc---eeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc
Q psy6213 146 VEFNPHSPYAFASVSENG----TIQQWDVRRPEKC---FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS 218 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg----~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 218 (330)
++|+|+++ .+++++.++ .+++||+...... ...+.+|...|++++|+|+|++|++|+.|+.|+|||+++++.
T Consensus 225 v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~ 303 (365)
T 4h5i_A 225 INFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM 303 (365)
T ss_dssp EEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE
T ss_pred EEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE
Confidence 99999998 578887776 5888988763322 345678899999999999999999999999999999999876
Q ss_pred ccce-eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 219 LEYS-INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 219 ~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
+... ..|..+|++++|+|||++ +++++ .|++|+|||+....
T Consensus 304 ~~~~~~gH~~~V~~v~fSpdg~~-laS~S--~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 304 SKIFKQAHSFAITEVTISPDSTY-VASVS--AANTIHIIKLPLNY 345 (365)
T ss_dssp EEEETTSSSSCEEEEEECTTSCE-EEEEE--TTSEEEEEECCTTT
T ss_pred EEEecCcccCCEEEEEECCCCCE-EEEEe--CCCeEEEEEcCCCC
Confidence 6554 568999999999999997 66677 79999999997543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-35 Score=251.04 Aligned_cols=258 Identities=12% Similarity=0.054 Sum_probs=198.9
Q ss_pred CCcccceEEEEeeCCCeeecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 2 AYLSPVHKHGLKADNGLAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
.|...|++++|+|+| .++. |++.+++....+.... ...|.+++|+| ++..||+++.||.|++||.
T Consensus 50 gh~~~v~~V~FsPdg-----~~~~---~~~~~~~~~~~~~~~~------~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~ 114 (588)
T 2j04_A 50 CNSKNLFHVKEFPLE-----FENK---LDFELAQQNGLLNSQP------VCYPRVCKPSP-IDDWMAVLSNNGNVSVFKD 114 (588)
T ss_dssp SBGGGTEEEEEECCC-----CCCT---TTTSCCCSSCSSTTSC------SCCEEEEEECS-SSSCEEEEETTSCEEEEET
T ss_pred CCCccEEEEEECCCC-----Ccce---EEEEeCCCceEeecCC------CCcEEEEEECC-CCCEEEEEeCCCcEEEEeC
Confidence 589999999999998 2444 4444433222222211 23479999999 9999999999999999995
Q ss_pred CCCCCCceeEEeccccc-----ceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-------eeee----ecCCCCeEE
Q psy6213 82 GQISRSKQERVFNDHKR-----TVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-------TKIF----HSNTESVRD 145 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-----~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~----~~~~~~v~~ 145 (330)
+. ....+. |.. .+.+++|+| ++++|++|+.||+|++||+.++.. +.++ .+|...|.+
T Consensus 115 ~~-----~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~s 187 (588)
T 2j04_A 115 NK-----MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTH 187 (588)
T ss_dssp TE-----EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEE
T ss_pred Cc-----eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEE
Confidence 32 555556 655 599999999 999999999999999999998753 4565 557789999
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEecCCCcc--ceeee-ccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccce
Q psy6213 146 VEFNPHSPYAFASVSENGTIQQWDVRRPEK--CFYQF-TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYS 222 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~--~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 222 (330)
++|+|++ +++++.|+.|++||+..... ...++ .+|...|.+++|+ |+.|++++ ++.|++||+.+++.....
T Consensus 188 VawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 188 IVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp EEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE
T ss_pred EEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE
Confidence 9999998 67888899999999987442 22445 4788999999999 68899887 699999999988554555
Q ss_pred eccccceEEEEE--cCCCCeEEEEeecccCCeEEEEEccC-----CC-----------------ccceEeecCCCCeEEE
Q psy6213 223 INTIASVSRIKW--RPQRKFHLASCSLVVDSSVNVWDIRR-----PY-----------------IPLASFTEHKDVVSGL 278 (330)
Q Consensus 223 ~~~~~~v~~~~~--~~~~~~l~~~~~~~~~~~i~i~d~~~-----~~-----------------~~~~~~~~~~~~v~~~ 278 (330)
.+|...+..++| +|++.. ++++. ++|. ++|.... .. .+...+. +...|.++
T Consensus 262 ~gh~~~V~~va~~~s~d~~~-La~a~--edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~v 336 (588)
T 2j04_A 262 TGSLENFHIIPLNHEKESTI-LLMSN--KTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGI 336 (588)
T ss_dssp CSCCSCCCEEEETTCSSCEE-EEECS--SCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEE
T ss_pred cCCCceEEEEEeeeCCCCCE-EEEEc--CCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEE
Confidence 579999999999 999986 55555 5899 9998631 10 0011222 24469999
Q ss_pred EEecCCCEEEEeec
Q psy6213 279 AWRGDPQLFIASSR 292 (330)
Q Consensus 279 ~~~~~~~~l~s~~~ 292 (330)
+|+|||+.+|+++.
T Consensus 337 a~SPdG~~lA~~~~ 350 (588)
T 2j04_A 337 SLSPDGYSIAIVYD 350 (588)
T ss_dssp EECTTSSEEEEEEE
T ss_pred EECCCCCEEEEEEe
Confidence 99999999999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=237.06 Aligned_cols=264 Identities=11% Similarity=0.082 Sum_probs=210.9
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEE-EEEcCCCcEEEEECCCCCCCceeEEeccc
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHI-ATGATNGAVVVWNLGQISRSKQERVFNDH 96 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 96 (330)
++++ |+.|++||+++++....+..+. .+.+++|+| +++++ ++++.|+.|++||+.+ .+....+..+
T Consensus 6 vs~~~d~~v~v~d~~~~~~~~~~~~~~--------~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~---~~~~~~~~~~ 73 (391)
T 1l0q_A 6 IANSESDNISVIDVTSNKVTATIPVGS--------NPMGAVISP-DGTKVYVANAHSNDVSIIDTAT---NNVIATVPAG 73 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSS--------SEEEEEECT-TSSEEEEEEGGGTEEEEEETTT---TEEEEEEECS
T ss_pred EEcCCCCEEEEEECCCCeEEEEeecCC--------CcceEEECC-CCCEEEEECCCCCeEEEEECCC---CeEEEEEECC
Confidence 4445 9999999999988776554332 258999999 87765 6777899999999987 6666666655
Q ss_pred ccceeEEEEEecCCCEEE-EEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc
Q psy6213 97 KRTVNKVSFHYVESNWLI-SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK 175 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~ 175 (330)
. .+.+++|+| ++++++ +++.++.|++||+.+++.+..+.. ...+.+++|+|+++.++++++.++.|++||+++ .+
T Consensus 74 ~-~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~ 149 (391)
T 1l0q_A 74 S-SPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KA 149 (391)
T ss_dssp S-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TE
T ss_pred C-CccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-Cc
Confidence 4 899999999 777664 555679999999999988887774 457899999999997668888899999999987 55
Q ss_pred ceeeeccCCCCeEEEEEcCCCCEE-EEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEE
Q psy6213 176 CFYQFTAHSGPIFACDWHPEHAWL-ATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVN 254 (330)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~ 254 (330)
....+..+ ..+.+++|+|+++++ ++++.++.|++||+++++.. ....+...+.+++|+|+++++++++....++.|+
T Consensus 150 ~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~ 227 (391)
T 1l0q_A 150 VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVS 227 (391)
T ss_dssp EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEE
T ss_pred EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE-EEEecCCCccceEECCCCCEEEEEecCcCCCcEE
Confidence 56666654 567999999999887 56778899999999987443 3444567889999999999877776311289999
Q ss_pred EEEccCCCccceEeecCCCCeEEEEEecCCCEE-EEeecCCeEeeeecc
Q psy6213 255 VWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLF-IASSRVSIIPRAKNI 302 (330)
Q Consensus 255 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~iw~~~ 302 (330)
+||+++++. +..+..|. .+.+++|+|++++| ++++.|+.|++|+..
T Consensus 228 ~~d~~~~~~-~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 228 MIDTGTNKI-TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp EEETTTTEE-EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEECCCCeE-EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 999998865 66666654 57899999999877 677889999999854
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=243.32 Aligned_cols=229 Identities=14% Similarity=0.075 Sum_probs=180.4
Q ss_pred eeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee-------
Q psy6213 56 DVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR------- 128 (330)
Q Consensus 56 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~------- 128 (330)
...+.+ ++.++++|+.||.|++||+.+ ++....+. ...|.++.++| . +++++.|++|++|+..
T Consensus 41 ~~~~~~-d~~~l~sg~~Dg~v~iwd~~~---~~~~~~~~--~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 41 NKSMYY-DKWVCMCRCEDGALHFTQLKD---SKTITTIT--TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILD 110 (343)
T ss_dssp CSSSSE-EEEEEEEEEETTEEEEEEESS---SSCEEEEE--EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEE
T ss_pred hhhhcC-CCCEEEEECCCCcEEEEECCC---CcEEEEEe--cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEee
Confidence 344555 789999999999999999988 55555554 56788889987 4 9999999999999765
Q ss_pred --cCceeeeee-cCCCCeEEEEEcC--CCCcEEEEEecCCcEEEEecCCCccceeee-ccCCCCeEEEEEcCCCCEEEEE
Q psy6213 129 --CQESTKIFH-SNTESVRDVEFNP--HSPYAFASVSENGTIQQWDVRRPEKCFYQF-TAHSGPIFACDWHPEHAWLATA 202 (330)
Q Consensus 129 --~~~~~~~~~-~~~~~v~~~~~~~--~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~ 202 (330)
+++.+..+. .|..+|.+++|+| +++ ++++++.||.|++||++++ +..... ..+...+.+++|+|++.+|++|
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 111 SKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDD-SQYIVHSAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp TTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSS-CEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred cCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCC-cEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 444344443 5668899999999 888 6999999999999999984 444444 3456689999999999999999
Q ss_pred ecCCcEEEEeCCCCccc-cceec-cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee---cCCCCeE-
Q psy6213 203 SRDKTIKVWDLSIKPSL-EYSIN-TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT---EHKDVVS- 276 (330)
Q Consensus 203 ~~dg~i~i~d~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~~v~- 276 (330)
+.||.|++||+++++.. ..... |..+|.+++|+|++.+ +++++ ++.|++||+++.+. ...+. .|...+.
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~-l~s~~---~~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~ 263 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW-MVVEC---DQTVVCFDLRKDVG-TLAYPTYTIPEFKTGT 263 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE-EEEEE---SSBEEEEETTSSTT-CBSSCCCBC-----CC
T ss_pred cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE-EEEEe---CCeEEEEEcCCCCc-ceeecccccccccccc
Confidence 99999999999998765 44444 7899999999999997 55555 45999999998765 33332 2444444
Q ss_pred -EEEEecCCCEEEEeec-CCeEeeeec
Q psy6213 277 -GLAWRGDPQLFIASSR-VSIIPRAKN 301 (330)
Q Consensus 277 -~~~~~~~~~~l~s~~~-dg~i~iw~~ 301 (330)
+++|+|++++|++++. |+.+++|+.
T Consensus 264 ~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 264 VTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 6999999999999998 999999965
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=241.19 Aligned_cols=281 Identities=13% Similarity=0.114 Sum_probs=191.1
Q ss_pred CCcccceEEEEee-CCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc--CCcEEEEEcCCCcE
Q psy6213 2 AYLSPVHKHGLKA-DNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI--EENHIATGATNGAV 76 (330)
Q Consensus 2 ~H~~~v~~~~~s~-~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i 76 (330)
.|.++|.+++|+| ++.+ ++++ ||.|++||+.+++....+.. ...+.+++|+|. ++.++++++.||.|
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF--------EETVYSHHMSPVSTKHCLVAVGTRGPKV 168 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC--------SSCEEEEEECSSCSSCCEEEEEESSSSE
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC--------CCceeeeEeecCCCCCcEEEEEcCCCeE
Confidence 3899999999999 6666 5555 99999999999877665542 223578888872 33499999999999
Q ss_pred EEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc-eeeee---------------ecCC
Q psy6213 77 VVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE-STKIF---------------HSNT 140 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~---------------~~~~ 140 (330)
++||+.+ .+....+..|...|.+++|+|.+..++++++.||.|++||++++. ....+ ..|.
T Consensus 169 ~~~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
T 4a11_B 169 QLCDLKS---GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245 (408)
T ss_dssp EEEESSS---SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCS
T ss_pred EEEeCCC---cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccccc
Confidence 9999987 677788889999999999999444479999999999999998765 33333 4678
Q ss_pred CCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccC-----CCCeEEEEEcCCCCEEEEEecCCcEEEEeCCC
Q psy6213 141 ESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH-----SGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 215 (330)
..|.+++|+|+++ .+++++.||.|++||+++... ......+ ...+........+..+++++.|+.|++||+.+
T Consensus 246 ~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 323 (408)
T 4a11_B 246 GKVNGLCFTSDGL-HLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS 323 (408)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCB-CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT
T ss_pred CceeEEEEcCCCC-EEEEecCCCeEEEEECCCCcc-ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcC
Confidence 8999999999998 599999999999999998433 3222211 12222222233456677788899999999999
Q ss_pred CccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec-CCCEEEEeecCC
Q psy6213 216 KPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG-DPQLFIASSRVS 294 (330)
Q Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg 294 (330)
++.......|...|.+++|+|++++ +++++ .||.|++||+++.+. +.....+. ....+.+ ....+.+++.++
T Consensus 324 ~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~--~dg~i~iw~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 396 (408)
T 4a11_B 324 GEQITMLKGHYKTVDCCVFQSNFQE-LYSGS--RDCNILAWVPSLYEP-VPDDDETT---TKSQLNPAFEDAWSSSDEEG 396 (408)
T ss_dssp CCEEEEECCCSSCEEEEEEETTTTE-EEEEE--TTSCEEEEEECC-----------------------------------
T ss_pred CcceeeeccCCCeEEEEEEcCCCCE-EEEEC--CCCeEEEEeCCCCCc-cCCCCceE---eccccccccceeecccCccC
Confidence 9777777788999999999999997 55555 599999999998765 33333222 1223333 445566778899
Q ss_pred eEeeeecc
Q psy6213 295 IIPRAKNI 302 (330)
Q Consensus 295 ~i~iw~~~ 302 (330)
.+++|...
T Consensus 397 ~~~~W~~~ 404 (408)
T 4a11_B 397 GTSAWSHP 404 (408)
T ss_dssp --------
T ss_pred ceeecCCc
Confidence 99999654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=242.22 Aligned_cols=240 Identities=12% Similarity=0.118 Sum_probs=195.8
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEec--------------------------------------
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFN-------------------------------------- 94 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-------------------------------------- 94 (330)
++.+++|+| ++++|+++ .++.|++||+.++.....+..+.
T Consensus 6 p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 6 PLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999 88866665 57899999987733111333332
Q ss_pred ----------------ccccceeEEEEEecCCCEE-EEEecCCcEEEEEee--cCceeeeee--cCCCCeEEEEEcCCCC
Q psy6213 95 ----------------DHKRTVNKVSFHYVESNWL-ISGSQDGTMRLFDIR--CQESTKIFH--SNTESVRDVEFNPHSP 153 (330)
Q Consensus 95 ----------------~~~~~i~~i~~~~~~~~~l-~~~~~d~~i~i~d~~--~~~~~~~~~--~~~~~v~~~~~~~~~~ 153 (330)
.|...|.+++|+| ++++| ++++.||.|++||+. +++.+..+. .+...|.+++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 2334799999999 77775 899999999999999 888888776 5678899999999998
Q ss_pred cEEEEEecCCcEEEEecCCCcc---ceeeeccCCCCeEEEEEcCC---CCEEEEEecCCcEEEEeCCCCccccc-eeccc
Q psy6213 154 YAFASVSENGTIQQWDVRRPEK---CFYQFTAHSGPIFACDWHPE---HAWLATASRDKTIKVWDLSIKPSLEY-SINTI 226 (330)
Q Consensus 154 ~~~~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~ 226 (330)
.|++++.+|.+++|++.+... ....+.+|...|.+++|+|+ +++|++++.|+.|++||+++++.... ...|.
T Consensus 163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 589999999999999987432 23367789999999999999 99999999999999999998866554 44688
Q ss_pred cceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec-------------------------CCCCeEEEEEe
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE-------------------------HKDVVSGLAWR 281 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------------------------~~~~v~~~~~~ 281 (330)
..|.+++|+ ++++ +++++ .|+.|++||+++++. +..+.. ....|.+++|+
T Consensus 242 ~~v~~~~~s-d~~~-l~s~~--~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 242 HFVSSICCG-KDYL-LLSAG--GDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp SCEEEEEEC-STTE-EEEEE--SSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred CceEEEEEC-CCCE-EEEEe--CCCeEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 999999999 9997 55555 699999999998875 555542 23579999999
Q ss_pred cCCCEEEEee-cCCeEeeeec
Q psy6213 282 GDPQLFIASS-RVSIIPRAKN 301 (330)
Q Consensus 282 ~~~~~l~s~~-~dg~i~iw~~ 301 (330)
|++++|++++ .|+.|++|+.
T Consensus 317 ~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 317 KNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSSSEEEEEETTCSEEEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEe
Confidence 9999999999 8999999987
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-33 Score=227.79 Aligned_cols=242 Identities=12% Similarity=0.242 Sum_probs=199.1
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|...|++++|+|+++++++| ||.|++|++++++....+..+... +. ++++ ++..+++++.++.+++|
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-------~~--~~~~-~~~~l~s~~~~~~~~~~ 134 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-------VG--SLSW-NSYILSSGSRSGHIHHH 134 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-------EE--EEEE-ETTEEEEEETTSEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-------EE--Eeec-CCCEEEEEecCCceEee
Confidence 478889999999999995555 999999999999887776655432 23 4455 67899999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce----eeeeecCCCCeEEEEEcCCCCcE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES----TKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
+.... ......+.+|...+..+.+.+ +++++++++.|+.|++||+++++. ......+...|.+++++|.+..+
T Consensus 135 ~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 211 (318)
T 4ggc_A 135 DVRVA--EHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 211 (318)
T ss_dssp ETTSS--SCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred ecCCC--ceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcE
Confidence 98763 456677889999999999998 899999999999999999987654 34445577899999999998876
Q ss_pred EE--EEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe--cCCcEEEEeCCCCccccceeccccceEE
Q psy6213 156 FA--SVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS--RDKTIKVWDLSIKPSLEYSINTIASVSR 231 (330)
Q Consensus 156 ~~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 231 (330)
+. +++.++.|++||.+.. ... ....+...+..+.|+|++..+++++ .|+.|++||+++++.+.....|...|++
T Consensus 212 ~~~~~~~~~~~i~lwd~~~~-~~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~ 289 (318)
T 4ggc_A 212 LATGGGTSDRHIRIWNVCSG-ACL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLS 289 (318)
T ss_dssp EEEEECTTTCEEEEEETTTC-CEE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEEecCCCCEEEEEecccc-ccc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEE
Confidence 54 4567899999999873 333 3344778899999999999887765 7999999999999888778889999999
Q ss_pred EEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 232 IKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
++|+|++++ +++++ .|++|++||+...
T Consensus 290 l~~spdg~~-l~S~s--~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 290 LTMSPDGAT-VASAA--ADETLRLWRCFEL 316 (318)
T ss_dssp EEECTTSSC-EEEEE--TTTEEEEECCSCC
T ss_pred EEEcCCCCE-EEEEe--cCCeEEEEECCCC
Confidence 999999997 55566 6999999998754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=236.95 Aligned_cols=228 Identities=20% Similarity=0.419 Sum_probs=200.7
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
.|.+++| +++++++|+.||.|++||+.+ .+....+.+|...|.+++| +++++++|+.||.|++||+++++.
T Consensus 135 ~v~~~~~---d~~~l~~g~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 135 GVYCLQY---DDQKIVSGLRDNTIKIWDKNT---LECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CEEEEEC---CSSEEEEEESSSCEEEEESSS---CCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cEEEEEE---CCCEEEEEeCCCeEEEEeCCC---CeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcE
Confidence 3566665 689999999999999999988 7788889999999999998 578999999999999999999999
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc--eeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC--FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
+..+..|...|.+++|+++ .+++++.||.|++||+++.... ...+.+|...|.+++| +++++++++.||.|++
T Consensus 206 ~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV 280 (435)
T ss_dssp EEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred EEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 9999999999999999753 6999999999999999874432 2567789999999999 6889999999999999
Q ss_pred EeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEe
Q psy6213 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIAS 290 (330)
Q Consensus 211 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 290 (330)
||+++++.......+...+.++.|+ +.+ +++++ .||.|++||+++++. +..+.+|...|.+++| ++.+|+++
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~-l~~g~--~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQYR--DRL-VVSGS--SDNTIRLWDIECGAC-LRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEE--TTE-EEEEE--TTSCEEEEETTTCCE-EEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred EECCcCcEEEEEcCCCCcEEEEEeC--CCE-EEEEe--CCCeEEEEECCCCCE-EEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 9999987777777788999999995 454 55555 699999999998876 8889999999999999 78899999
Q ss_pred ecCCeEeeeecc
Q psy6213 291 SRVSIIPRAKNI 302 (330)
Q Consensus 291 ~~dg~i~iw~~~ 302 (330)
+.||.|++|+..
T Consensus 353 ~~dg~i~vwd~~ 364 (435)
T 1p22_A 353 AYDGKIKVWDLV 364 (435)
T ss_dssp ETTSCEEEEEHH
T ss_pred eCCCcEEEEECC
Confidence 999999999853
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=235.14 Aligned_cols=237 Identities=12% Similarity=0.084 Sum_probs=199.6
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeE-----EecccccceeEEEEEecCCCEEEEEecCCcEEEEEee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQER-----VFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR 128 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-----~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~ 128 (330)
+.+++|+| ++.++++++.++.|++||+.+ .+... .+..|...+.+++|+| ++.++++++.|+.|++||++
T Consensus 125 ~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~ 199 (433)
T 3bws_A 125 PKSVRFID-NTRLAIPLLEDEGMDVLDINS---GQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLK 199 (433)
T ss_dssp BCCCEESS-SSEEEEEBTTSSSEEEEETTT---CCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETT
T ss_pred ceEEEEeC-CCeEEEEeCCCCeEEEEECCC---CeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECC
Confidence 46899999 899999999999999999987 44444 3457888999999987 88999999999999999999
Q ss_pred cCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe-----
Q psy6213 129 CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS----- 203 (330)
Q Consensus 129 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----- 203 (330)
+++.+..+..+...+.+++|+|+++.++++++.++.|++||+++ .+....+.. ...+.+++|+|+++++++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 99999888888899999999999997667777899999999987 555666654 45689999999999999888
Q ss_pred ---cCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEE
Q psy6213 204 ---RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAW 280 (330)
Q Consensus 204 ---~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 280 (330)
.||.|++||+++++. .....+...+..++|+|++++++++++ .++.|++||+.+++. ...+. +...+.+++|
T Consensus 278 ~~~~dg~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~ 352 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKL-IDTIGPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKV-QKSIP-VFDKPNTIAL 352 (433)
T ss_dssp TCSCCEEEEEEETTTTEE-EEEEEEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEE-EEEEE-CSSSEEEEEE
T ss_pred cccCCCeEEEEECCCCcE-EeeccCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcE-EEEec-CCCCCCeEEE
Confidence 488999999998744 334455668899999999998888877 799999999997764 44444 6778999999
Q ss_pred ecCCCEEEEeec---------------CCeEeeeecc
Q psy6213 281 RGDPQLFIASSR---------------VSIIPRAKNI 302 (330)
Q Consensus 281 ~~~~~~l~s~~~---------------dg~i~iw~~~ 302 (330)
+|++++|++++. ||.|++|+..
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 999999988876 5799999853
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=227.76 Aligned_cols=279 Identities=12% Similarity=0.059 Sum_probs=214.7
Q ss_pred CcccceEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEE-EEcCCCcEEE
Q psy6213 3 YLSPVHKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIA-TGATNGAVVV 78 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~i 78 (330)
+...+.+++|+|+|++ ++++ ++.|++||+.+++....+..+. .+.+++|+| ++++|+ +++.++.|++
T Consensus 30 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--------~v~~~~~sp-dg~~l~~~~~~~~~v~v 100 (391)
T 1l0q_A 30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--------SPQGVAVSP-DGKQVYVTNMASSTLSV 100 (391)
T ss_dssp CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--------SEEEEEECT-TSSEEEEEETTTTEEEE
T ss_pred cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--------CccceEECC-CCCEEEEEECCCCEEEE
Confidence 3456899999999997 3444 9999999999988776554332 368999999 777664 5567799999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEE-EEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWL-ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
||+.+ .+....+.. ...+.+++|+| +++.+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++++++
T Consensus 101 ~d~~~---~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~ 174 (391)
T 1l0q_A 101 IDTTS---NTVAGTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYV 174 (391)
T ss_dssp EETTT---TEEEEEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred EECCC---CeEEEEEeC-CCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEE
Confidence 99987 566666554 45789999998 67766 78888999999999999888888754 56799999999997667
Q ss_pred EEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe---cCCcEEEEeCCCCccccceeccccceEEEEE
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS---RDKTIKVWDLSIKPSLEYSINTIASVSRIKW 234 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 234 (330)
+++.++.|++||+++ .+....+. +...+.+++|+|+++++++++ .++.|++||+++++..... .....+.+++|
T Consensus 175 ~~~~~~~v~~~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~ 251 (391)
T 1l0q_A 175 ANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI-PVGPDPAGIAV 251 (391)
T ss_dssp EETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE-ECCSSEEEEEE
T ss_pred EeCCCCEEEEEECCC-CeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE-ecCCCccEEEE
Confidence 888999999999987 45555554 566889999999999999888 6899999999987544333 33456889999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeE---EEE------------EecCC----------CEEEE
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVS---GLA------------WRGDP----------QLFIA 289 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~---~~~------------~~~~~----------~~l~s 289 (330)
+|++++++++++ .++.|++||+.+++. +..+..|..+.. .+. |+.+. ..+..
T Consensus 252 s~dg~~l~~s~~--~d~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~ 328 (391)
T 1l0q_A 252 TPDGKKVYVALS--FXNTVSVIDTATNTI-TATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD 328 (391)
T ss_dssp CTTSSEEEEEET--TTTEEEEEETTTTEE-EEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred ccCCCEEEEEcC--CCCEEEEEECCCCcE-EEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence 999998877777 699999999998765 555655543321 012 22211 34666
Q ss_pred eecCCeEeeeecc
Q psy6213 290 SSRVSIIPRAKNI 302 (330)
Q Consensus 290 ~~~dg~i~iw~~~ 302 (330)
.+.|...++|+..
T Consensus 329 ~~~~~~~~~W~~~ 341 (391)
T 1l0q_A 329 LSKDATEWKWDFG 341 (391)
T ss_dssp CCBSCSEEEEECS
T ss_pred CCCCceEEEEECC
Confidence 6778889999754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=238.31 Aligned_cols=247 Identities=16% Similarity=0.202 Sum_probs=171.7
Q ss_pred CcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecc-------cCCcEEEEEcCC
Q psy6213 3 YLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSC-------IEENHIATGATN 73 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~l~~~~~d 73 (330)
|.+.+....+.+++.+++++ |++|+|||.+.++....... .....+...|++++|+| .++++||+|+.|
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~--~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVL--GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE--CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeee--cccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 33444445556667775555 99999999998765433221 12234455689999986 367899999999
Q ss_pred CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee-----------------
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF----------------- 136 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~----------------- 136 (330)
++|+|||+.+ ......+..|...+.+++|+|.+..+|++++.|++|++||+++++.....
T Consensus 166 ~tv~~Wd~~~---~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 166 CTLIIWRLTD---EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp SEEEEEEEET---TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred CeEEEEECCC---CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence 9999999987 56777777899999999999955578999999999999999876543221
Q ss_pred --------ecCCCCeEEEEEc-CCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEE------------------
Q psy6213 137 --------HSNTESVRDVEFN-PHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFA------------------ 189 (330)
Q Consensus 137 --------~~~~~~v~~~~~~-~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~------------------ 189 (330)
.+|...+.++.|+ |++. .+++++.|+.+++||+.. .+....+..|...+..
T Consensus 243 ~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (393)
T 4gq1_A 243 PLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG 320 (393)
T ss_dssp GGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSC
T ss_pred cceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCccee
Confidence 3466778899987 6777 699999999999999986 3333333333333222
Q ss_pred EEEcC--CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 190 CDWHP--EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 190 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
..++| ++.++++|+.||.|++||..+++.......+..+|.+++|+|+|++ +++++ ++.+.+|.+..
T Consensus 321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~-LA~as---~~Gv~lvrL~g 389 (393)
T 4gq1_A 321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSH-LAIAT---EGSVLLTRLMG 389 (393)
T ss_dssp CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSE-EEEEE---SSEEEEEEEGG
T ss_pred EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCE-EEEEe---CCCeEEEEEeC
Confidence 33333 3446777889999999999998777777888899999999999997 66666 67788887653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=226.82 Aligned_cols=229 Identities=11% Similarity=0.150 Sum_probs=181.1
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEE-EEEecCCcEEEEEeecC
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWL-ISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l-~~~~~d~~i~i~d~~~~ 130 (330)
..|.+++|+| ++++|++|+.++ +++|++.. ....... +...+..+.+.+ +++.+ ++++.|+.|++||..++
T Consensus 20 ~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~---~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~d~~v~iWd~~~~ 91 (355)
T 3vu4_A 20 NPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHP---VAHIMSQ--EMRHLSKVRMLH-RTNYVAFVTGVKEVVHIWDDVKK 91 (355)
T ss_dssp CCCCEEEECT-TSSEEEEECSSE-EEEEEETT---EEEEEEE--ECSCCCEEEECT-TSSEEEEECSSTTEEEEEETTTT
T ss_pred CceEEEEECC-CCCEEEEEcCCE-EEEEecCC---cceeeee--ecCCeEEEEEcC-CCCEEEEEECCccEEEEEECCCC
Confidence 4479999999 999999998775 78999876 4443332 223577888887 55655 67788899999999999
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEE--EecCCcE
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLAT--ASRDKTI 208 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i 208 (330)
+.+..+. +..+|.+++++++. ++++ .++.|++||+.+..+.+..+.. +...+++++ .++++ |+.||.|
T Consensus 92 ~~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 92 QDVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp EEEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCE
T ss_pred cEEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEE
Confidence 9988887 66799999999864 3333 4789999999985355555554 444566776 56666 5799999
Q ss_pred EEEeCCCCc----------------cccceeccccceEEEEEcCCCCeEEEEeecccCCe-EEEEEccCCCccceEee-c
Q psy6213 209 KVWDLSIKP----------------SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSS-VNVWDIRRPYIPLASFT-E 270 (330)
Q Consensus 209 ~i~d~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~-i~i~d~~~~~~~~~~~~-~ 270 (330)
++||++++. .......|..+|.+++|+|++++ +++++ .|++ |++||+++++. +..+. +
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~-l~s~s--~d~~~v~iwd~~~~~~-~~~~~~g 237 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM-VATCS--QDGTIIRVFKTEDGVL-VREFRRG 237 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSSE-EEEEE--TTCSEEEEEETTTCCE-EEEEECT
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE-EEEEe--CCCCEEEEEECCCCcE-EEEEEcC
Confidence 999998764 14556678899999999999997 66666 6998 99999999876 67776 5
Q ss_pred -CCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 271 -HKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 271 -~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence 99999999999999999999999999999864
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-32 Score=226.67 Aligned_cols=241 Identities=15% Similarity=0.209 Sum_probs=192.4
Q ss_pred ccceeeeeecccC---CcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEe
Q psy6213 51 NFSCNDVAWSCIE---ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDI 127 (330)
Q Consensus 51 ~~~v~~~~~~~~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~ 127 (330)
...|++++|+| + +++|++|+.||.|++||+.+.. ......+..|...|.+++|+| ++++|++++.||.|++||+
T Consensus 39 ~~~v~~~~~~~-~~~~g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 39 DDSIGCLSFSP-PTLPGNFLIAGSWANDVRCWEVQDSG-QTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp SSCEEEEEECC-TTSSSEEEEEEETTSEEEEEEECTTS-CEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred CCceEEEEEcC-CCCCceEEEEECCCCcEEEEEcCCCC-ceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcEEEEEc
Confidence 34479999999 6 6999999999999999998621 334467788999999999998 8999999999999999999
Q ss_pred ecCceeeeeecCCCCeEEEEE--cCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC
Q psy6213 128 RCQESTKIFHSNTESVRDVEF--NPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD 205 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 205 (330)
++++... +..|...|.+++| +|++. ++++++.||.|++||+++ .+.+..+..+ ..+.++.+. +..+++++.+
T Consensus 116 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~-~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~ 189 (368)
T 3mmy_A 116 SSNQAIQ-IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRS-SNPMMVLQLP-ERCYCADVI--YPMAVVATAE 189 (368)
T ss_dssp TTTEEEE-EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSC-SSCSEEEECS-SCEEEEEEE--TTEEEEEEGG
T ss_pred CCCCcee-eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCC-CcEEEEEecC-CCceEEEec--CCeeEEEeCC
Confidence 9888766 4559999999999 88887 699999999999999998 5666677655 456666666 4588899999
Q ss_pred CcEEEEeCCCCcccccee--ccccceEEEEEcCCCCe---EEEEeecccCCeEEEEEccCCC--ccceEeecCCC-----
Q psy6213 206 KTIKVWDLSIKPSLEYSI--NTIASVSRIKWRPQRKF---HLASCSLVVDSSVNVWDIRRPY--IPLASFTEHKD----- 273 (330)
Q Consensus 206 g~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~---l~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~----- 273 (330)
+.+++||++......... ........+.+.++... .+++++ .|+.|++||++... .....+..|..
T Consensus 190 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
T 3mmy_A 190 RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267 (368)
T ss_dssp GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCccccceeeeeeecccccc
Confidence 999999998764422222 23344555555544432 245555 69999999998774 23667777776
Q ss_pred -------CeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 274 -------VVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 274 -------~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.|.+++|+|++++|++++.||.|++|+..
T Consensus 268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred cccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 79999999999999999999999999865
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=214.84 Aligned_cols=276 Identities=11% Similarity=0.041 Sum_probs=183.9
Q ss_pred ceEEEEeeCCC-e--eecC-CCeEEEEEcCCc---ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEE-E
Q psy6213 7 VHKHGLKADNG-L--AQPS-RNVFKIFLIKDT---EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVV-V 78 (330)
Q Consensus 7 v~~~~~s~~~~-~--~~~g-d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~-i 78 (330)
+.++-|-.-|- - +++. ...|++|+..++ ++.....++... |..+.+.|+..+++.++-.+=.+. +
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~v 114 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVP-------VLQIVPVPDVYNLVCVALGNLEIREI 114 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSC-------EEEECCCTTCCSCEEEEECSSSEEEE
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCce-------eEEEEEcCcccceeeeeeccccccce
Confidence 34444443332 2 3334 999999999997 666655555433 567777774455555443322221 2
Q ss_pred EECCCCCC---CceeEEecccccceeEEEEEecCCCEEEEEe--cCCcEEEEEe-ecCceeeeeecCCCCeEEEEEcC--
Q psy6213 79 WNLGQISR---SKQERVFNDHKRTVNKVSFHYVESNWLISGS--QDGTMRLFDI-RCQESTKIFHSNTESVRDVEFNP-- 150 (330)
Q Consensus 79 w~~~~~~~---~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~--~d~~i~i~d~-~~~~~~~~~~~~~~~v~~~~~~~-- 150 (330)
+-+.-... ........+|...+..+ + +++++.+++ .|+.|++|++ .+++.+..+..|...++.++|+|
T Consensus 115 ~sla~spd~~~~~~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 115 RALFCSSDDESEKQVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp EEECC------CCEEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred EEEEECCCccccccEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence 22211100 11222223344444443 3 566566544 5999999999 45788888888999999999999
Q ss_pred -CCCcEEEEEecCCcEEEEecCCCccceeeeccCC---CCeEEEEEcCCCCEE------------EEEecCCcEEEEeCC
Q psy6213 151 -HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHS---GPIFACDWHPEHAWL------------ATASRDKTIKVWDLS 214 (330)
Q Consensus 151 -~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l------------~~~~~dg~i~i~d~~ 214 (330)
+++ +|++++.|++|++||+++ ++.++++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..
T Consensus 191 g~~~-~LaSgS~D~TIkIWDl~T-Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~ 268 (356)
T 2w18_A 191 GMQE-ALLGTTIMNNIVIWNLKT-GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK 268 (356)
T ss_dssp TSTT-EEEEEETTSEEEEEETTT-CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred CCCc-eEEEecCCCcEEEEECCC-CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence 566 799999999999999998 67778887654 357778999999876 567889999999999
Q ss_pred CCccccce-----eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeE-EEEEecCCCEEE
Q psy6213 215 IKPSLEYS-----INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVS-GLAWRGDPQLFI 288 (330)
Q Consensus 215 ~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~ 288 (330)
+++.+... .++...+.+..++ +. ++++++ .|++|+|||+.+++. +.++.+|...+. .++|+|||++|+
T Consensus 269 tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS--~DgTIkIWDl~tGk~-l~tL~gH~~~vvs~vafSPDG~~La 342 (356)
T 2w18_A 269 TTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAIL--TSGTIAIWDLLLGQC-TALLPPVSDQHWSFVKWSGTDSHLL 342 (356)
T ss_dssp TTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEE--TTSCEEEEETTTCSE-EEEECCC--CCCCEEEECSSSSEEE
T ss_pred CCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEc--CCCcEEEEECCCCcE-EEEecCCCCCeEEEEEECCCCCEEE
Confidence 88543321 1233333333333 45 467777 799999999999986 888988887655 589999999999
Q ss_pred EeecCCeEeeeec
Q psy6213 289 ASSRVSIIPRAKN 301 (330)
Q Consensus 289 s~~~dg~i~iw~~ 301 (330)
+|+.|++|++|+.
T Consensus 343 SGS~D~TIklWd~ 355 (356)
T 2w18_A 343 AGQKDGNIFVYHY 355 (356)
T ss_dssp EECTTSCEEEEEE
T ss_pred EEECCCcEEEecC
Confidence 9999999999973
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-31 Score=223.57 Aligned_cols=279 Identities=10% Similarity=0.016 Sum_probs=208.8
Q ss_pred ccceEEEEeeCCCe-eecC------CC----eEEEEEc--CCcceeee--eceeeccccccccceeeeeeccc-------
Q psy6213 5 SPVHKHGLKADNGL-AQPS------RN----VFKIFLI--KDTEFVET--HNLRVGKNINLNFSCNDVAWSCI------- 62 (330)
Q Consensus 5 ~~v~~~~~s~~~~~-~~~g------d~----~i~iw~~--~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~------- 62 (330)
+.+...+|.+.|.. +++| +| .+++||+ .+++.+.. +..+.... ..+++++.
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~ 135 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWL-------RYAGHTASDEVFEKL 135 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGH-------HHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHH-------HHHHHHHHHHHHHHH
Confidence 46677788888875 4333 57 8999999 88876533 33333222 33333320
Q ss_pred ------CCcEEEEEcCC------CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC---cEEEEEe
Q psy6213 63 ------EENHIATGATN------GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG---TMRLFDI 127 (330)
Q Consensus 63 ------~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~---~i~i~d~ 127 (330)
.+..++.++.+ +.|++||++. .....+..|...+.+++|+| +++.|++++.++ .|++||+
T Consensus 136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g----~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~ 210 (415)
T 2hqs_A 136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG----YNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTL 210 (415)
T ss_dssp HSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS----CSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCCcCCCEEEEEEecCCCCccceEEEEcCCC----CCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEEC
Confidence 15566666554 7999999975 34566677889999999999 899999998875 9999999
Q ss_pred ecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc--EEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec-
Q psy6213 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT--IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR- 204 (330)
Q Consensus 128 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 204 (330)
++++.. .+..+...+.+++|+|+++.++++++.++. |++||++++ + ...+..|...+.+++|+|+|++|++++.
T Consensus 211 ~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~ 287 (415)
T 2hqs_A 211 ANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQ 287 (415)
T ss_dssp TTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-C-EEECCCCSSCEEEEEECTTSSEEEEEECT
T ss_pred CCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-C-EEeCcCCCCcccceEECCCCCEEEEEECC
Confidence 988765 455677889999999999965557776665 999999873 3 3566778889999999999999988886
Q ss_pred CC--cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 205 DK--TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 205 dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
++ .|.+||+.+++. .....+...+..++|+|+|++++++.....+..|++||+.+++. ..+..+. .+.+++|+|
T Consensus 288 ~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~sp 363 (415)
T 2hqs_A 288 AGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAP 363 (415)
T ss_dssp TSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECT
T ss_pred CCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcC
Confidence 44 678889887743 33334556788999999999877766511135899999998764 4455554 899999999
Q ss_pred CCCEEEEeecCC---eEeeeecc
Q psy6213 283 DPQLFIASSRVS---IIPRAKNI 302 (330)
Q Consensus 283 ~~~~l~s~~~dg---~i~iw~~~ 302 (330)
||++|++++.++ .|++|+..
T Consensus 364 dg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 364 NGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp TSSEEEEEEEETTEEEEEEEETT
T ss_pred CCCEEEEEEcCCCccEEEEEECC
Confidence 999999998877 78888753
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-30 Score=216.83 Aligned_cols=208 Identities=16% Similarity=0.292 Sum_probs=176.1
Q ss_pred EEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC----ceeeeeecCCCCeEEEEEcC--CCCcEEEEEecCCc
Q psy6213 91 RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ----ESTKIFHSNTESVRDVEFNP--HSPYAFASVSENGT 164 (330)
Q Consensus 91 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~dg~ 164 (330)
..+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++ +....+..|...|.+++|+| ++. +|++++.||.
T Consensus 5 ~~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETTSC
T ss_pred ccCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCCCe
Confidence 45678999999999999 8999999999999999999876 45667788999999999999 466 7999999999
Q ss_pred EEEEecCCCc--------cceeeeccCCCCeEEEEEcCC--CCEEEEEecCCcEEEEeCCCCcccccee-----------
Q psy6213 165 IQQWDVRRPE--------KCFYQFTAHSGPIFACDWHPE--HAWLATASRDKTIKVWDLSIKPSLEYSI----------- 223 (330)
Q Consensus 165 i~i~d~~~~~--------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------- 223 (330)
|++||++++. +....+..|...|.+++|+|+ +++|++++.||.|++||+++.+......
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 9999998743 446777889999999999999 9999999999999999998875433222
Q ss_pred --ccccceEEEEEcCC---CCeEEEEeecccCCeEEEEEccCCCc-cceEeecCCCCeEEEEEecCC----CEEEEeecC
Q psy6213 224 --NTIASVSRIKWRPQ---RKFHLASCSLVVDSSVNVWDIRRPYI-PLASFTEHKDVVSGLAWRGDP----QLFIASSRV 293 (330)
Q Consensus 224 --~~~~~v~~~~~~~~---~~~l~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~----~~l~s~~~d 293 (330)
.+...+.+++|+|+ +.. +++++ .++.+.+|+...+.. ....+.+|...|.+++|+|++ ++|++++.|
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~-l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEK-LAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCE-EEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred cCCcccceeEEEeccCCCCCcE-EEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 46678999999997 776 55555 589997777766653 256677899999999999998 899999999
Q ss_pred CeEeeeeccc
Q psy6213 294 SIIPRAKNIK 303 (330)
Q Consensus 294 g~i~iw~~~~ 303 (330)
|.|++|+...
T Consensus 240 g~i~iwd~~~ 249 (351)
T 3f3f_A 240 GRIRIFKITE 249 (351)
T ss_dssp SCEEEEEEEE
T ss_pred CeEEEEeCCC
Confidence 9999998654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=209.04 Aligned_cols=188 Identities=12% Similarity=0.115 Sum_probs=144.3
Q ss_pred CCcEEEEEc--CCCcEEEEECCCCCCCceeEEecccccceeEEEEEe--cCCCEEEEEecCCcEEEEEeecCceeeeeec
Q psy6213 63 EENHIATGA--TNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHY--VESNWLISGSQDGTMRLFDIRCQESTKIFHS 138 (330)
Q Consensus 63 ~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 138 (330)
+++++.+++ .|+.|++|++... ++....+..|...+..++|+| .++.+|++++.|++|++||+++++.++++.+
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g 221 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAED--GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI 221 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCcEEEecccCCCCcEEEEEECCC--CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC
Confidence 666666644 5999999999553 566677778988888888887 3579999999999999999999999999986
Q ss_pred CC---CCeEEEEEcCCCCcE-----------EEEEecCCcEEEEecCCCccceeee-----ccCCCCeEEEEEcCCCCEE
Q psy6213 139 NT---ESVRDVEFNPHSPYA-----------FASVSENGTIQQWDVRRPEKCFYQF-----TAHSGPIFACDWHPEHAWL 199 (330)
Q Consensus 139 ~~---~~v~~~~~~~~~~~~-----------~~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l 199 (330)
|. ..+.+++|+|++..+ +++|+.|++|++||..+ ++.+..+ .+|...+.+..++ +.++
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~~lsg~~s--g~~l 298 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGRFLEGDVK--DHCA 298 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT-TEEEEEEEECCCTTCCCCEEEEEEE--TTEE
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeeccCCCcceeEccccC--CCEE
Confidence 54 367788999999743 36788999999999987 4544433 3565555444444 7899
Q ss_pred EEEecCCcEEEEeCCCCccccceeccccce-EEEEEcCCCCeEEEEeecccCCeEEEEEc
Q psy6213 200 ATASRDKTIKVWDLSIKPSLEYSINTIASV-SRIKWRPQRKFHLASCSLVVDSSVNVWDI 258 (330)
Q Consensus 200 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~~~~~~~i~i~d~ 258 (330)
++++.|++|+|||+.+++......+|...+ ..++|+|+|++ +++++ .|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~-LaSGS--~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH-LLAGQ--KDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE-EEEEC--TTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE-EEEEE--CCCcEEEecC
Confidence 999999999999999997777666666554 46899999997 55666 6999999996
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-28 Score=199.40 Aligned_cols=278 Identities=8% Similarity=0.066 Sum_probs=198.5
Q ss_pred EEEeeCCCe-e-ecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-CCcEEEEECCCCC
Q psy6213 10 HGLKADNGL-A-QPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-NGAVVVWNLGQIS 85 (330)
Q Consensus 10 ~~~s~~~~~-~-~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~ 85 (330)
..|.+++.+ + +.+ ++.|.+||.++++.......+. ..+ .++|+| +++++++++. ++.|.+||..+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~-- 71 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGY-------DFV-DTAITS-DCSNVVVTSDFCQTLVQIETQL-- 71 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCC-------CEE-EEEECS-SSCEEEEEESTTCEEEEEECSS--
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccC-------Ccc-eEEEcC-CCCEEEEEeCCCCeEEEEECCC--
Confidence 346666666 4 444 9999999999988766554321 124 899999 8876655554 88999999987
Q ss_pred CCce-eEEecccccceeEEEEEecCCCEEEEEecCC---cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec
Q psy6213 86 RSKQ-ERVFNDHKRTVNKVSFHYVESNWLISGSQDG---TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 86 ~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
.+. ...+..+..+..+++|+| ++++++++..++ .|.+||+.+++.+..+.. .....+++|+|++++++++...
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 72 -EPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp -SSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEET
T ss_pred -CceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecC
Confidence 444 555666666666699998 888888555553 899999999988887764 4457899999999977777777
Q ss_pred CCc-EEEEecCCCccce---eeeccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCccc--cceeccccceEEEEE
Q psy6213 162 NGT-IQQWDVRRPEKCF---YQFTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPSL--EYSINTIASVSRIKW 234 (330)
Q Consensus 162 dg~-i~i~d~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~~~~~v~~~~~ 234 (330)
++. |.+|++...+... .........+..++|+|+|+++++++ .++.|.+||+.+++.. .........+..++|
T Consensus 149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 228 (331)
T 3u4y_A 149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVV 228 (331)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEE
T ss_pred CCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEE
Confidence 788 9999988643321 11123445689999999999665554 6889999999887541 233344567889999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCcc-ceEeecC----CC---CeEEEEEecCCCEEEEeec-CCeEeeeeccc
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIP-LASFTEH----KD---VVSGLAWRGDPQLFIASSR-VSIIPRAKNIK 303 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~-~~~~~~~----~~---~v~~~~~~~~~~~l~s~~~-dg~i~iw~~~~ 303 (330)
+|+|++++++.. .++.|.+||+.+++.. +..+..+ .. ....++|+||+++|++++. ++.|.+|+...
T Consensus 229 spdg~~l~v~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 229 SRDGSTVYVLTE--STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp CTTSSEEEEECS--SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CCCCCEEEEEEc--CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 999998777765 5889999999877531 1122211 11 2356899999998866554 56999998654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=208.38 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=181.5
Q ss_pred CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCC---cEEEEECCCCCCCceeEEecccccce
Q psy6213 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG---AVVVWNLGQISRSKQERVFNDHKRTV 100 (330)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~i 100 (330)
+.|++||++.+. ...+..+. ..+.+++|+| +++.|++++.++ .|++||+.+ ++. ..+..|...+
T Consensus 159 ~~i~i~d~~g~~-~~~l~~~~-------~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~t---g~~-~~l~~~~~~~ 225 (415)
T 2hqs_A 159 YELRVSDYDGYN-QFVVHRSP-------QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLAN---GAV-RQVASFPRHN 225 (415)
T ss_dssp EEEEEEETTSCS-CEEEEEES-------SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTT---CCE-EEEECCSSCE
T ss_pred ceEEEEcCCCCC-CEEEeCCC-------CcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCC---CcE-EEeecCCCcc
Confidence 799999998544 33333222 2368999999 999999998875 899999987 444 3466678899
Q ss_pred eEEEEEecCCCEEE-EEecCCc--EEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec-CC--cEEEEecCCCc
Q psy6213 101 NKVSFHYVESNWLI-SGSQDGT--MRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE-NG--TIQQWDVRRPE 174 (330)
Q Consensus 101 ~~i~~~~~~~~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-dg--~i~i~d~~~~~ 174 (330)
.+++|+| +++.|+ +++.++. |++||+.+++. ..+..+...+.+++|+|++++ |++++. ++ .|++||+.++
T Consensus 226 ~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~-l~~~s~~~g~~~i~~~d~~~~- 301 (415)
T 2hqs_A 226 GAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGG- 301 (415)
T ss_dssp EEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSS-
T ss_pred cCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCE-EEEEECCCCCcEEEEEECCCC-
Confidence 9999999 788776 6666654 99999988765 556667888999999999996 555544 55 5777788763
Q ss_pred cceeeeccCCCCeEEEEEcCCCCEEEEEecC---CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCC
Q psy6213 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRD---KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDS 251 (330)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 251 (330)
+ ...+..+...+.+++|+|+|++|++++.+ ..|++||+.+++.. ....+ ..+..++|+|+|++++.++. .++
T Consensus 302 ~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~spdg~~l~~~s~--~~~ 376 (415)
T 2hqs_A 302 A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST-FLDETPSLAPNGTMVIYSSS--QGM 376 (415)
T ss_dssp C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS-SSCEEEEECTTSSEEEEEEE--ETT
T ss_pred C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC-CCcCCeEEcCCCCEEEEEEc--CCC
Confidence 2 34455567788999999999999988864 58999999987543 22333 38999999999998777765 333
Q ss_pred --eEEEEEccCCCccceEeecCCCCeEEEEEecCC
Q psy6213 252 --SVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDP 284 (330)
Q Consensus 252 --~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 284 (330)
.|++||+.... ...+..|.+.|.+++|+|..
T Consensus 377 ~~~l~~~d~~g~~--~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 377 GSVLNLVSTDGRF--KARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEEEEETTSCC--EEECCCSSSEEEEEEECCCC
T ss_pred ccEEEEEECCCCc--EEEeeCCCCCCcCCcccccc
Confidence 89999987553 67788899999999999954
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-28 Score=210.72 Aligned_cols=276 Identities=10% Similarity=0.055 Sum_probs=211.9
Q ss_pred EEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC--CCCCC
Q psy6213 11 GLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL--GQISR 86 (330)
Q Consensus 11 ~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~ 86 (330)
+|+|++.+++++ ++.|.+||..+++....+.... .+..++|+| ++++|++++.|+.|.+||+ .+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~--------~~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t--- 211 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY--------AVHISRMSA-SGRYLLVIGRDARIDMIDLWAKE--- 211 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST--------TEEEEEECT-TSCEEEEEETTSEEEEEETTSSS---
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc--------ccceEEECC-CCCEEEEECCCCeEEEEECcCCC---
Confidence 488999885555 9999999999998876654321 147899999 9999999999999999999 55
Q ss_pred CceeEEecccccceeEEEEEec---CCCEEEEEe-cCCcEEEEEeecCceeeeeecC-----------CCCeEEEEEcCC
Q psy6213 87 SKQERVFNDHKRTVNKVSFHYV---ESNWLISGS-QDGTMRLFDIRCQESTKIFHSN-----------TESVRDVEFNPH 151 (330)
Q Consensus 87 ~~~~~~~~~~~~~i~~i~~~~~---~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~ 151 (330)
.+.+..+. +...+..++|+|. +++++++++ .+++|.+||..+++++..+..+ ...+..+.++|+
T Consensus 212 ~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 212 PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence 56666666 4456799999971 567777776 5899999999999988877642 236889999999
Q ss_pred CCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCcccccee----ccc
Q psy6213 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPSLEYSI----NTI 226 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~----~~~ 226 (330)
++.++++...++.|.+||..+..........+...+..+.|+|+|+++++++ .+++|.+||..+++...... +|.
T Consensus 291 ~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~ 370 (543)
T 1nir_A 291 HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 370 (543)
T ss_dssp SSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred CCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence 9888888889999999999874332212223566788999999999876655 58899999999985543332 133
Q ss_pred cceEEEEEcCCCCeEEEEeecccCCeEEEEEccC-------CCccceEeecCCCCeEEEEEecCCCEEEEee-------c
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR-------PYIPLASFTEHKDVVSGLAWRGDPQLFIASS-------R 292 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-------~ 292 (330)
.....+ ++|++..+++++.. .+++|.+||+.+ .+. ++.+..|...+..++++|++++|++++ .
T Consensus 371 g~g~~~-~~p~~g~~~~s~~~-~d~~V~v~d~~~~~~~~~~~~~-v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 371 GRGANF-VHPKYGPVWSTSHL-GDGSISLIGTDPKNHPQYAWKK-VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp TTCEEE-EETTTEEEEEEEBS-SSSEEEEEECCTTTCTTTBTSE-EEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCccc-CCCCCccEEEeccC-CCceEEEEEeCCCCCchhcCeE-EEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 333333 57875555666531 379999999987 444 888999988899999999999999987 3
Q ss_pred CCeEeeeecc
Q psy6213 293 VSIIPRAKNI 302 (330)
Q Consensus 293 dg~i~iw~~~ 302 (330)
+++|.+|+..
T Consensus 448 ~~~v~v~d~~ 457 (543)
T 1nir_A 448 SQSVAVFDLK 457 (543)
T ss_dssp HTCEEEEETT
T ss_pred CceEEEEECC
Confidence 7899999854
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-28 Score=210.72 Aligned_cols=282 Identities=13% Similarity=0.129 Sum_probs=210.9
Q ss_pred ceEEEEeeCCCe-eecC-CCeEEEEEc--CCcceeeeeceeeccccccccceeeeeeccc---CCcEEEEEc-CCCcEEE
Q psy6213 7 VHKHGLKADNGL-AQPS-RNVFKIFLI--KDTEFVETHNLRVGKNINLNFSCNDVAWSCI---EENHIATGA-TNGAVVV 78 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g-d~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~-~dg~i~i 78 (330)
+.+++|+|||++ ++++ |+.|.+||+ .+++....+.. + ..+..++|+|. +++++++++ .++.|.+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~--g------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v 252 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--G------IEARSVESSKFKGYEDRYTIAGAYWPPQFAI 252 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--C------SEEEEEEECCSTTCTTTEEEEEEEESSEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec--C------CCcceEEeCCCcCCCCCEEEEEEccCCeEEE
Confidence 789999999999 5555 999999999 67666554432 1 12488999972 567777776 5899999
Q ss_pred EECCCCCCCceeEEecc----------cc-cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee--eeecCCCCeEE
Q psy6213 79 WNLGQISRSKQERVFND----------HK-RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK--IFHSNTESVRD 145 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~----------~~-~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~v~~ 145 (330)
||..+ .+.+..+.. |. ..+..+.++|+++.++++...++.|.+||..+.+.+. .+. +...+..
T Consensus 253 ~D~~t---~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~ 328 (543)
T 1nir_A 253 MDGET---LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHD 328 (543)
T ss_dssp EETTT---CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCC
T ss_pred Eeccc---cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccC
Confidence 99987 566666543 22 3688999999666677788889999999998766544 343 5667889
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc----CCCCeEEEEEcCC-CCEEEEEe-cCCcEEEEeCCC----
Q psy6213 146 VEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA----HSGPIFACDWHPE-HAWLATAS-RDKTIKVWDLSI---- 215 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~---- 215 (330)
++|+|+++++++++..+++|.+||+.+ ++....+.. |.+....+ ++|+ +..++++. .|++|.+||..+
T Consensus 329 ~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~ 406 (543)
T 1nir_A 329 GGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP 406 (543)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred ceECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc
Confidence 999999997677777789999999998 566665553 55443333 4677 56666665 589999999987
Q ss_pred ---CccccceeccccceEEEEEcCCCCeEEEEeecc----cCCeEEEEEccCCCccceEe--------ecCCCCeEEEEE
Q psy6213 216 ---KPSLEYSINTIASVSRIKWRPQRKFHLASCSLV----VDSSVNVWDIRRPYIPLASF--------TEHKDVVSGLAW 280 (330)
Q Consensus 216 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~~~~i~i~d~~~~~~~~~~~--------~~~~~~v~~~~~ 280 (330)
.+.+.....+...+..++++|++++|.+..... .+++|.+||+.+.+.....+ ..+...+..+.|
T Consensus 407 ~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 486 (543)
T 1nir_A 407 QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 486 (543)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence 545555555667788899999999866654100 16799999999887643443 355678999999
Q ss_pred ecCCCEEEEee-----cCCeEeeeecc
Q psy6213 281 RGDPQLFIASS-----RVSIIPRAKNI 302 (330)
Q Consensus 281 ~~~~~~l~s~~-----~dg~i~iw~~~ 302 (330)
+|+|+.|+.+. .|+.|.||+..
T Consensus 487 ~~~g~~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 487 NKRGDEVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp CSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred CCCCCEEEEEeecCCCCCCeEEEEECC
Confidence 99999999763 47999999754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-27 Score=194.64 Aligned_cols=270 Identities=10% Similarity=0.117 Sum_probs=186.4
Q ss_pred eec-C-CCeEEEEEcCC-cceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC-CcEEEEECCCC-CCCceeEEe
Q psy6213 19 AQP-S-RNVFKIFLIKD-TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN-GAVVVWNLGQI-SRSKQERVF 93 (330)
Q Consensus 19 ~~~-g-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~-~~~~~~~~~ 93 (330)
+++ + ++.|++|+++. ++........ ....+.+++|+| ++++|++++.+ +.|.+|++... ........+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVD------VPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEE------CSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEe------cCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence 444 5 99999999963 3322221111 122358899999 88888888776 89999999721 122334444
Q ss_pred cccccceeEEEEEecCCCEEEEEe-cCCcEEEEEe---ecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEe
Q psy6213 94 NDHKRTVNKVSFHYVESNWLISGS-QDGTMRLFDI---RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWD 169 (330)
Q Consensus 94 ~~~~~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d 169 (330)
..+. .+..++|+| +++++++++ .++.|.+||+ ...+....+. ....+.+++|+|++++++++...++.|++||
T Consensus 81 ~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 81 ALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFT 157 (343)
T ss_dssp ECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred ccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence 4433 789999998 777776665 4889999999 4444455554 3346889999999996544444899999999
Q ss_pred cCCCcccee----eecc-CCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCC--Ccc--cccee--c----cccceEEEE
Q psy6213 170 VRRPEKCFY----QFTA-HSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSI--KPS--LEYSI--N----TIASVSRIK 233 (330)
Q Consensus 170 ~~~~~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~--~----~~~~v~~~~ 233 (330)
+.+.++... .... ....+..++|+|+++++++++ .++.+.+||+.. ++. ..... . ....+..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH 237 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence 986333221 2222 345788999999999776555 789999999964 221 11111 1 123567899
Q ss_pred EcCCCCeEEEEeecccCCeEEEEEccC--CC-ccceEeecCCCCeEEEEEecCCCEEEEee-cCCeEeeeec
Q psy6213 234 WRPQRKFHLASCSLVVDSSVNVWDIRR--PY-IPLASFTEHKDVVSGLAWRGDPQLFIASS-RVSIIPRAKN 301 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~i~i~d~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iw~~ 301 (330)
|+|++++++++.. .++.|.+||+.. +. ..+..+..+.. +.+++|+|++++|++++ .++.+.+|+.
T Consensus 238 ~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 238 ITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp ECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred ECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 9999998877776 699999999983 22 22334444444 88999999999888887 6899999954
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-27 Score=194.07 Aligned_cols=270 Identities=9% Similarity=0.033 Sum_probs=204.0
Q ss_pred cccceEEEEeeCCCe-eecC--------CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcE-EEEEcCC
Q psy6213 4 LSPVHKHGLKADNGL-AQPS--------RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENH-IATGATN 73 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g--------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~d 73 (330)
...+..++|+|+|++ ++++ ++.|.+||..+++....+.... .+..++|+| ++++ +++...+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--------~~~~~~~s~-dg~~l~v~~~~~ 110 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL--------KPFGATINN-TTQTLWFGNTVN 110 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS--------CCCSEEEET-TTTEEEEEETTT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC--------CcceEEECC-CCCEEEEEecCC
Confidence 356788999999988 4433 3489999999988776654321 147899999 7774 4555667
Q ss_pred CcEEEEECCCCCCCceeEEeccccc---------ceeEEEEEecCCCEEEEEe--cCCcEEEEEeecCceeeeeecCCCC
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKR---------TVNKVSFHYVESNWLISGS--QDGTMRLFDIRCQESTKIFHSNTES 142 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~---------~i~~i~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~ 142 (330)
+.|.+||..+ .+....+..+.. .+.+++|+| +++.+++++ .++.|.+||..+++....+..+...
T Consensus 111 ~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 186 (353)
T 3vgz_A 111 SAVTAIDAKT---GEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM 186 (353)
T ss_dssp TEEEEEETTT---CCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT
T ss_pred CEEEEEeCCC---CeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc
Confidence 9999999987 555555554332 268899998 777666665 4788999999999988888755666
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc----CCCCeEEEEEcCCCCEEEEEec-CCcEEEEeCCCCc
Q psy6213 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA----HSGPIFACDWHPEHAWLATASR-DKTIKVWDLSIKP 217 (330)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~ 217 (330)
+..++|+|++++ +++++.++.|.+||+.+ .+....+.. +...+..++|+|+++++++++. ++.|.+||..+++
T Consensus 187 ~~~~~~s~dg~~-l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 187 STGLALDSEGKR-LYTTNADGELITIDTAD-NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp CCCCEEETTTTE-EEEECTTSEEEEEETTT-TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEECCCCCE-EEEEcCCCeEEEEECCC-CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 889999999994 77778899999999987 444444443 4556788999999997776665 4899999998875
Q ss_pred cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 218 SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 218 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
....... .. ...++|+|++++++++.. .++.|.+||..+++. +..+.. ...+.+++|+|||++|+.+..++
T Consensus 265 ~~~~~~~-~~-~~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 265 ILAKVAA-PE-SLAVLFNPARNEAYVTHR--QAGKVSVIDAKSYKV-VKTFDT-PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEEC-SS-CCCEEEETTTTEEEEEET--TTTEEEEEETTTTEE-EEEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEEc-CC-CceEEECCCCCEEEEEEC--CCCeEEEEECCCCeE-EEEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence 4433322 22 356999999998777776 689999999988865 555544 34689999999999888777664
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-27 Score=194.01 Aligned_cols=257 Identities=12% Similarity=0.128 Sum_probs=190.3
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEeccc-cccee
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDH-KRTVN 101 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~i~ 101 (330)
++.|++||+.+++...... + ...+.+++|+| ++++|++++ ++.|.+||+.+. .+.......+ ...+.
T Consensus 21 ~~~i~~~d~~~~~~~~~~~-~-------~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~--~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQ-T-------PELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGD--PSPEKVDTGFATICNN 88 (297)
T ss_dssp CEEEEEEETTTTEEEEEEE-E-------SSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSC--CSCEECCCTTCCCBCS
T ss_pred ceeEEEEeCCCCceeeecc-C-------CcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCC--CCceEecccccccccc
Confidence 8999999999887653322 2 22368999999 999999886 789999999761 1222333344 47789
Q ss_pred EEEEEecCCCEEEEEe--cCCcEEEEEee--cCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccce
Q psy6213 102 KVSFHYVESNWLISGS--QDGTMRLFDIR--CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF 177 (330)
Q Consensus 102 ~i~~~~~~~~~l~~~~--~d~~i~i~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 177 (330)
+++|+| ++++|++++ .++...+|.++ +++ ...+.. ...+..++|+|+++++++++..++.+++|+++......
T Consensus 89 ~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 89 DHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp CCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred ceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence 999999 889999988 33556666554 333 334443 34588999999999766688899999999976434445
Q ss_pred eeeccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCC-CCccccceeccccceEEEEEcCCCCeEEEEeecc-------
Q psy6213 178 YQFTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLS-IKPSLEYSINTIASVSRIKWRPQRKFHLASCSLV------- 248 (330)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~------- 248 (330)
..+..+...+.+++|+|++++|+.++ .++.+++|++. ..........+...+..++|+|+++++++++...
T Consensus 166 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 66677888999999999999888766 58999999986 3334444555667899999999999876666510
Q ss_pred -cCCeEEEEEccCCCc-cceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 249 -VDSSVNVWDIRRPYI-PLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 249 -~~~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
.++.|++||+.+++. .+..+.+|...+.+++|+|+++.|++++.+.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 015799999987754 2333457888999999999999999888764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-28 Score=220.76 Aligned_cols=287 Identities=10% Similarity=0.040 Sum_probs=205.1
Q ss_pred cccceEEEEeeCCCeeecC---CC-----eEEEEEcCCcceeeeeceeeccc---------------c--ccccceeeee
Q psy6213 4 LSPVHKHGLKADNGLAQPS---RN-----VFKIFLIKDTEFVETHNLRVGKN---------------I--NLNFSCNDVA 58 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g---d~-----~i~iw~~~~~~~~~~~~~~~~~~---------------~--~~~~~v~~~~ 58 (330)
...+.+++|+|||++++.+ |+ .|++||+++++.......+.... . .....+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 3568999999999995443 66 89999999988665554332110 0 0002368899
Q ss_pred ecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec
Q psy6213 59 WSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS 138 (330)
Q Consensus 59 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 138 (330)
|+| ++++|++++. +.|.+||+.+... .....+..+...+..++|+| ++++|+.++ ++.|++||+.+++.......
T Consensus 116 ~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~ 190 (741)
T 2ecf_A 116 WSP-DAQRLLFPLG-GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTAD 190 (741)
T ss_dssp ECT-TSSEEEEEET-TEEEEEESSSCST-TSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCC
T ss_pred ECC-CCCEEEEEeC-CcEEEEECCCCCc-ceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccC
Confidence 999 9999998886 8999999987210 03344666778899999999 899998887 56999999998876655443
Q ss_pred CCCC----------------eEEEEEcCCCCcEEEEEecCC---------------------------------cEEEEe
Q psy6213 139 NTES----------------VRDVEFNPHSPYAFASVSENG---------------------------------TIQQWD 169 (330)
Q Consensus 139 ~~~~----------------v~~~~~~~~~~~~~~~~~~dg---------------------------------~i~i~d 169 (330)
+... +..++|+|+|++ |++++.|+ .|++||
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CccceeccccceeeeeccccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 3332 478999999996 66665544 788899
Q ss_pred cCC-Cccceeeec-cCCCCeEEEEEcCCCCEEEEEec-----CCcEEEEeCCCCccccceecccc----ceEEEEEcCCC
Q psy6213 170 VRR-PEKCFYQFT-AHSGPIFACDWHPEHAWLATASR-----DKTIKVWDLSIKPSLEYSINTIA----SVSRIKWRPQR 238 (330)
Q Consensus 170 ~~~-~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~ 238 (330)
+.+ +........ .|...+..++| |||++|++++. +..|++||+.+++.......+.. .+..++|+|||
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence 876 432211111 46778999999 99999987764 56799999998855433333222 34688999999
Q ss_pred CeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEE-EEecCCCEEEEee-cCC--eEeeeec
Q psy6213 239 KFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGL-AWRGDPQLFIASS-RVS--IIPRAKN 301 (330)
Q Consensus 239 ~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~-~dg--~i~iw~~ 301 (330)
+ ++++++ .++.+++|.+..... ...+..|...+..+ .|+|+++.|+..+ .++ .+++|..
T Consensus 349 ~-~~~~~~--~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 349 S-ILWSSE--RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp C-EEEEEC--TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred e-EEEEec--CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 9 466665 588777877653333 56677778888887 5999999776544 454 8889974
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=221.89 Aligned_cols=285 Identities=8% Similarity=-0.002 Sum_probs=199.4
Q ss_pred ccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC---------C
Q psy6213 5 SPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN---------G 74 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g 74 (330)
..+.+++|+|||++++++ ||.|++||+.+++....+..+... ...+.+++|+| ++++|++++.+ +
T Consensus 17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~----~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIE----SLRAIRYEISP-DREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTT----TTTCSEEEECT-TSSEEEEEESCCCCSSSCCCS
T ss_pred ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEecccccc----ccccceEEECC-CCCEEEEEecCccceeeccee
Confidence 347889999999997668 999999999998776554432211 12368999999 99999998764 7
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCe-----------
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESV----------- 143 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v----------- 143 (330)
.+.+||+.+.. ...+.....|...+..++|+| +++.|+.++. +.|++||+.+++.......+...+
T Consensus 92 ~i~~~d~~~~~-~~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ 168 (723)
T 1xfd_A 92 YYVLSKIPHGD-PQSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE 168 (723)
T ss_dssp EEEEEESSSCC-CEECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred eEEEEECCCCc-eEeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence 78899998732 122222234555689999999 8888988885 799999999887766555433333
Q ss_pred -------EEEEEcCCCCcEEEEEecCC----------------------------------cEEEEecCCCccceeeecc
Q psy6213 144 -------RDVEFNPHSPYAFASVSENG----------------------------------TIQQWDVRRPEKCFYQFTA 182 (330)
Q Consensus 144 -------~~~~~~~~~~~~~~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~~ 182 (330)
.+++|+|+|+. |++++.++ .|++||+.++ +....+..
T Consensus 169 ee~~~~~~~~~~SpDg~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-~~~~~l~~ 246 (723)
T 1xfd_A 169 EEILKTHIAHWWSPDGTR-LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-THDLEMMP 246 (723)
T ss_dssp HTTSSSSEEEEECTTSSE-EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-CCCEECCC
T ss_pred EEeccCcceEEECCCCCE-EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-ceeEEeeC
Confidence 78999999995 66655432 7999999873 33344443
Q ss_pred C------CCCeEEEEEcCCCCEEEEEecC----CcEEEEeCCCCccccceec-cccce----EEEEEcCCCCeEEEE-ee
Q psy6213 183 H------SGPIFACDWHPEHAWLATASRD----KTIKVWDLSIKPSLEYSIN-TIASV----SRIKWRPQRKFHLAS-CS 246 (330)
Q Consensus 183 ~------~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~-~~~~v----~~~~~~~~~~~l~~~-~~ 246 (330)
+ ...+..++|+|||+++++.... ..|++||+.+++....... +...+ ..++|+|||+.++.. ..
T Consensus 247 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred CccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence 3 5678999999999988776533 5799999988754333222 22333 378999999986665 44
Q ss_pred cccCC------eEEEEE-ccCCCc-cceEeecCCCCeEE-EEEecCCCEEEEeecC---CeEeeeec
Q psy6213 247 LVVDS------SVNVWD-IRRPYI-PLASFTEHKDVVSG-LAWRGDPQLFIASSRV---SIIPRAKN 301 (330)
Q Consensus 247 ~~~~~------~i~i~d-~~~~~~-~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d---g~i~iw~~ 301 (330)
.++ .|.+|| ...+.. ....+..+...+.. ++|+|||+.|+..+.+ +.+++|..
T Consensus 327 --~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 327 --PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp --CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred --ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 466 577777 333330 02333333344554 6999999999876665 78899974
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-26 Score=208.30 Aligned_cols=277 Identities=11% Similarity=0.073 Sum_probs=199.7
Q ss_pred ccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCC
Q psy6213 5 SPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 83 (330)
..|.+++|+|| +.++.+ ++.+++||+.+++....... ...+.+++|+| +++.|+++ .++.|++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~--------~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~ 150 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDT--------NEETASLDFSP-VGDRVAYV-RNHNLYIARGGK 150 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECC--------TTCCTTCEECT-TSSEEEEE-ETTEEEEEECBC
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCC--------cccccCCcCCC-CCCEEEEE-ECCeEEEEecCc
Confidence 56999999999 665555 99999999998765433221 12257899999 99999885 679999999875
Q ss_pred -----CCCCceeEEecccccc--------------eeEEEEEecCCCEEEEEe---------------------------
Q psy6213 84 -----ISRSKQERVFNDHKRT--------------VNKVSFHYVESNWLISGS--------------------------- 117 (330)
Q Consensus 84 -----~~~~~~~~~~~~~~~~--------------i~~i~~~~~~~~~l~~~~--------------------------- 117 (330)
.. .......+... +.++.|+| ++++|++++
T Consensus 151 ~~~~~g~---~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~ 226 (706)
T 2z3z_A 151 LGEGMSR---AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYP 226 (706)
T ss_dssp TTSCCCC---CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCC
T ss_pred ccccCCC---cEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCC
Confidence 22 22222222222 58999999 899999887
Q ss_pred ------cCCcEEEEEeecCceeeeee--cCCCCeEEEEEcCCCCcEEEEEecCC-----cEEEEecCCCccceeeec-cC
Q psy6213 118 ------QDGTMRLFDIRCQESTKIFH--SNTESVRDVEFNPHSPYAFASVSENG-----TIQQWDVRRPEKCFYQFT-AH 183 (330)
Q Consensus 118 ------~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~~~~~~~-~~ 183 (330)
.+..|++||+.+++...... .+...+.+++|+|+++. +++++.++ .|++||+.++........ .+
T Consensus 227 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~ 305 (706)
T 2z3z_A 227 MAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI-LYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD 305 (706)
T ss_dssp BTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE-EEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC
T ss_pred CCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE-EEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC
Confidence 34679999999887654432 35567899999999995 66666565 899999987423322222 22
Q ss_pred CC---CeEEEEEcC--CCCEEEEEecCCcEEEEeCC-CCccccceeccccceEE-EEEcCCCCeEEEEeecccCC----e
Q psy6213 184 SG---PIFACDWHP--EHAWLATASRDKTIKVWDLS-IKPSLEYSINTIASVSR-IKWRPQRKFHLASCSLVVDS----S 252 (330)
Q Consensus 184 ~~---~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~~~~~----~ 252 (330)
.. .+..+.|+| +|++++++..|+.+++|++. .+........+...+.. ++|+|+++.+++++. .++ .
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~--~~~~~~~~ 383 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST--EASPLERH 383 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES--SSCTTCBE
T ss_pred CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec--CCCCceEE
Confidence 22 246789999 99999999999999999876 34334444445566766 799999998777776 454 6
Q ss_pred EEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC----CeEeeeecc
Q psy6213 253 VNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV----SIIPRAKNI 302 (330)
Q Consensus 253 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iw~~~ 302 (330)
|..||+.++. ...+. |...+.+++|+|||++|+....+ +.|++|+..
T Consensus 384 l~~~d~~~~~--~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 384 FYCIDIKGGK--TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEEEETTCCC--CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred EEEEEcCCCC--ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 7777777654 33333 66779999999999988877544 569999754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=212.10 Aligned_cols=277 Identities=8% Similarity=-0.000 Sum_probs=200.8
Q ss_pred cceEEEEeeCCCeeecC-CCeEEEEEcCCc---ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 6 PVHKHGLKADNGLAQPS-RNVFKIFLIKDT---EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
.|.+++|||||++++.+ ++.|.+||+.++ +... +..+ ...+..++|+| ++++|+.++ ++.|.+||+
T Consensus 110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~-l~~~-------~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~ 179 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQ-LTHG-------EGFATDAKLSP-KGGFVSFIR-GRNLWVIDL 179 (741)
T ss_dssp ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCB-CCCS-------SSCEEEEEECT-TSSEEEEEE-TTEEEEEET
T ss_pred CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEE-cccC-------CcccccccCCC-CCCEEEEEe-CCcEEEEec
Confidence 48999999999997777 999999999987 4322 2211 23368999999 999999887 468999999
Q ss_pred CCCCCCceeEEecccccc----------------eeEEEEEecCCCEEEEEecCC-------------------------
Q psy6213 82 GQISRSKQERVFNDHKRT----------------VNKVSFHYVESNWLISGSQDG------------------------- 120 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~----------------i~~i~~~~~~~~~l~~~~~d~------------------------- 120 (330)
.+ .+.......+... +..+.|+| ++++|++++.|+
T Consensus 180 ~~---g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 180 AS---GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp TT---TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred CC---CCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 87 4444333333322 47899999 888888887765
Q ss_pred --------cEEEEEeec-Cceeeeee--cCCCCeEEEEEcCCCCcEEEEEe----cCCcEEEEecCCCccceeeeccCCC
Q psy6213 121 --------TMRLFDIRC-QESTKIFH--SNTESVRDVEFNPHSPYAFASVS----ENGTIQQWDVRRPEKCFYQFTAHSG 185 (330)
Q Consensus 121 --------~i~i~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~ 185 (330)
.|++||+.+ ++...... .+...+..++| |+++++++++. .+..|++||+.+ ++....+..+..
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~ 333 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS-NQQRVLAHETSP 333 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT-CCEEEEEEEECS
T ss_pred CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC-CceEEEEEcCCC
Confidence 789999988 77554432 35677899999 99996444433 256799999987 444444444433
Q ss_pred ----CeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEE-EEcCCCCeEEEEeecccCC--eEEEEEc
Q psy6213 186 ----PIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRI-KWRPQRKFHLASCSLVVDS--SVNVWDI 258 (330)
Q Consensus 186 ----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~~~~~~--~i~i~d~ 258 (330)
.+..++|+|+|+++++++.||.+++|.+...........+...+..+ .|+|+++.++++++ .++ .+++|++
T Consensus 334 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~--~~~~~~~~l~~~ 411 (741)
T 2ecf_A 334 TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAG--IESARESQIYAV 411 (741)
T ss_dssp SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEEC--SSCTTCBEEEEE
T ss_pred CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEe--CCCCceEEEEEE
Confidence 45689999999999999999988888765221244444456677777 59999998777776 455 8999998
Q ss_pred cCCCccceEeecCCCCeEEEEEecCCCEEEEeecC----CeEeeeec
Q psy6213 259 RRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV----SIIPRAKN 301 (330)
Q Consensus 259 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iw~~ 301 (330)
.........+.. ...+..++|+|||+.|+....+ +.+.+|+.
T Consensus 412 ~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 412 PLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp ETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred EcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 753332455554 5678999999999998877554 46777764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-26 Score=187.46 Aligned_cols=272 Identities=13% Similarity=0.125 Sum_probs=183.2
Q ss_pred CCcccceEEEEeeCCCe-eecC--CCeEEEEEcC--CcceeeeeceeeccccccccceeeeeecccCCcEEEEEc-CCCc
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS--RNVFKIFLIK--DTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA-TNGA 75 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~ 75 (330)
.|...+.+++|+|+|++ ++++ ++.|.+|+++ +++........... .+..++|+| +++++++++ .++.
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~s~-dg~~l~~~~~~~~~ 107 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG------SLTHISTDH-QGQFVFVGSYNAGN 107 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS------CCSEEEECT-TSSEEEEEETTTTE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC------CCcEEEEcC-CCCEEEEEecCCCe
Confidence 35678899999999998 4444 4999999998 55543322222111 358899999 888776655 4888
Q ss_pred EEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEe-cCCcEEEEEeec-Cceee----eeec-CCCCeEEEEE
Q psy6213 76 VVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGS-QDGTMRLFDIRC-QESTK----IFHS-NTESVRDVEF 148 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~~~----~~~~-~~~~v~~~~~ 148 (330)
|.+||+...........+.. ...+.+++|+| +++++++++ .++.|++||+.+ ++... .+.. ....+..++|
T Consensus 108 i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (343)
T 1ri6_A 108 VSVTRLEDGLPVGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF 185 (343)
T ss_dssp EEEEEEETTEEEEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE
T ss_pred EEEEECCCCccccccccccC-CCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEE
Confidence 99999952111334444443 34688999998 777777776 899999999987 54432 2222 3457889999
Q ss_pred cCCCCcEEEEEecCCcEEEEecCCC-ccc--eeeec---cC---CCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCC--C
Q psy6213 149 NPHSPYAFASVSENGTIQQWDVRRP-EKC--FYQFT---AH---SGPIFACDWHPEHAWLATAS-RDKTIKVWDLSI--K 216 (330)
Q Consensus 149 ~~~~~~~~~~~~~dg~i~i~d~~~~-~~~--~~~~~---~~---~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~ 216 (330)
+|+++++++++..++.|.+||+... +.. ..... .. ...+..++|+|++++|+++. .++.|.+||+.. +
T Consensus 186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~ 265 (343)
T 1ri6_A 186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS 265 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC
Confidence 9999976666668999999999642 211 11111 11 23566899999998877544 789999999983 2
Q ss_pred c-cccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc--CCCc-cceEeecCCCCeEEEEEecCCC
Q psy6213 217 P-SLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR--RPYI-PLASFTEHKDVVSGLAWRGDPQ 285 (330)
Q Consensus 217 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~ 285 (330)
. ...........+..++|+|+++++++++. .++.+.+|++. ++.. .+..+.. .....+++|.|+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 266 VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ--KSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp CEEEEEEEECSSSCCCEEECTTSSEEEEECT--TTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred ceEEeeeecCCCccceEEECCCCCEEEEecC--CCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 1 12222223344889999999998788775 58999999665 4432 1333332 24567778877543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=186.05 Aligned_cols=234 Identities=10% Similarity=0.103 Sum_probs=174.9
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCC-cceeeeeceeeccccccccceeeeeecccCCcEEEEEc--CCCcEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKD-TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA--TNGAVV 77 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~ 77 (330)
.|.+.|.+++|+|+|++++++ ++.|.+||+++ ++.......+. ...+.+++|+| ++++|++++ .++...
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~sp-dg~~l~~~~~~~~~~~~ 111 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFA------TICNNDHGISP-DGALYAISDKVEFGKSA 111 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTC------CCBCSCCEECT-TSSEEEEEECTTTSSCE
T ss_pred cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccc------cccccceEECC-CCCEEEEEEeCCCCcce
Confidence 477889999999999997777 99999999998 77654433221 12358899999 999999988 334555
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEE-EEecCCcEEEEEeec-CceeeeeecCCCCeEEEEEcCCCCcE
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI-SGSQDGTMRLFDIRC-QESTKIFHSNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~-~~~~d~~i~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~ 155 (330)
+|.++.. ......+..+ ..+..++|+| +++.|+ +++.++.+++|+++. ......+..+...+.+++|+|+++.+
T Consensus 112 l~~~~~~--~~~~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 187 (297)
T 2ojh_A 112 IYLLPST--GGTPRLMTKN-LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWI 187 (297)
T ss_dssp EEEEETT--CCCCEECCSS-SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEE
T ss_pred EEEEECC--CCceEEeecC-CCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEE
Confidence 6555321 1223334433 3488899999 777666 788899999999753 23345555677889999999999965
Q ss_pred EEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC-----------CcEEEEeCCCCccccc--e
Q psy6213 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD-----------KTIKVWDLSIKPSLEY--S 222 (330)
Q Consensus 156 ~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~--~ 222 (330)
++++..++.+++|++.........+..+...+..++|+|++++|++++.+ +.|.+||+.+++.... .
T Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 267 (297)
T 2ojh_A 188 YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL 267 (297)
T ss_dssp EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence 55555689999999874455667777788889999999999999888876 5699999988754222 2
Q ss_pred eccccceEEEEEcCCCCeEEEEee
Q psy6213 223 INTIASVSRIKWRPQRKFHLASCS 246 (330)
Q Consensus 223 ~~~~~~v~~~~~~~~~~~l~~~~~ 246 (330)
..+...+..++|+|+++++++++.
T Consensus 268 ~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 268 FGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EESTTTSCSCCBCTTSSEEEEEEE
T ss_pred CCCCcccccceECCCCCEEEEEEe
Confidence 256678999999999998777765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=189.32 Aligned_cols=293 Identities=13% Similarity=0.161 Sum_probs=193.0
Q ss_pred cccceEEEEeeCCCeeecC-CCeEEEEEcCCccee--------eeeceeeccccccccceeeeeecccCCcEEE----EE
Q psy6213 4 LSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFV--------ETHNLRVGKNINLNFSCNDVAWSCIEENHIA----TG 70 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~----~~ 70 (330)
...++.+++++++.+++++ ...+++|+....... ............+...|.+++|+| ++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 3468999999999995555 334999886532110 000011111122345589999999 899999 78
Q ss_pred cCCCcEEEEECCCC--------CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCC
Q psy6213 71 ATNGAVVVWNLGQI--------SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES 142 (330)
Q Consensus 71 ~~dg~i~iw~~~~~--------~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 142 (330)
+.|+.|++||+.+. ........+.+|...|.+++|+|.++++|++++.||+|++||++++........|...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 89999999998652 0111245566799999999999955899999999999999999988776666678889
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc-------CCCCeEEEEEcCCCCEEEEEe-cCCc------E
Q psy6213 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA-------HSGPIFACDWHPEHAWLATAS-RDKT------I 208 (330)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~-~dg~------i 208 (330)
|.+++|+|+++ .|++|+.||.|++||++. .....+.. |...+.+++|++++.++++.+ .||. +
T Consensus 195 v~~v~wspdg~-~lasgs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 195 VTSVCWSPKGK-QLAVGKQNGTVVQYLPTL--QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp EEEEEECTTSS-CEEEEETTSCEEEECTTC--CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred eeEEEEcCCCC-EEEEEcCCCcEEEEccCC--cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 99999999998 489999999999999982 22333322 234799999999888775543 4433 8
Q ss_pred EEEeCCCCccc--ccee----------ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC--------------
Q psy6213 209 KVWDLSIKPSL--EYSI----------NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY-------------- 262 (330)
Q Consensus 209 ~i~d~~~~~~~--~~~~----------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~-------------- 262 (330)
++|+++..+.. .... ....+...+.+-++.+.++++.+ ..+.|.+.......
T Consensus 272 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~--~s~dv~vl~~~~~~~~~~~~~~~d~~ra 349 (434)
T 2oit_A 272 VMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA--ASTEVSILARQSDQINWESWLLEDSSRA 349 (434)
T ss_dssp EEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET--TCSBCEEEEECTTSSCEEEEEECGGGCC
T ss_pred EEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC--CCCceeEEEecCCCCccEEEeccccccc
Confidence 99999865211 1000 11122223344467776666665 45555555543211
Q ss_pred -ccceEeecCCCCeEEEEEec---------------CCCEEEEeecCCeEeeeeccc
Q psy6213 263 -IPLASFTEHKDVVSGLAWRG---------------DPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 263 -~~~~~~~~~~~~v~~~~~~~---------------~~~~l~s~~~dg~i~iw~~~~ 303 (330)
.|+.. ........++++.- --..|..-+.||.|..|....
T Consensus 350 ~lP~~~-~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 350 ELPVTD-KSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp BCCBCT-TSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred cccCCC-CCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 11110 01122234444322 235788889999999997654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-26 Score=201.61 Aligned_cols=270 Identities=8% Similarity=0.015 Sum_probs=189.5
Q ss_pred cccceEEEEeeCCCeeec-C--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC---CCcEE
Q psy6213 4 LSPVHKHGLKADNGLAQP-S--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT---NGAVV 77 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~-g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~ 77 (330)
..+|++++|+|||+.++. + ||+++||++++++.......+. ..+..++|+| + +++++++. +....
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~-------~~~~~~~~sp-d-~~l~~~~~~~g~~~~~ 91 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPI-------NSVLDPHYGV-G-RVILVRDVSKGAEQHA 91 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCC-------SEECEECTTC-S-EEEEEEECSTTSCCEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccc-------cccccccCCC-C-eEEEEeccCCCCcceE
Confidence 457999999999999444 3 9999999997766543322111 2358899999 6 77777664 45566
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
+|.+.....+... .+... ......+|+|+....+++.+.++.+.+||+.+++.......+. .+++|+|+|+. ++
T Consensus 92 l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~-la 165 (582)
T 3o4h_A 92 LFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDL-IA 165 (582)
T ss_dssp EEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTE-EE
T ss_pred EEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCE-EE
Confidence 6655431012222 22222 2344668888444445555555666799999887665554332 78999999994 66
Q ss_pred EEecC----CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCC--cEEEEeCCCCccccceeccccceEE
Q psy6213 158 SVSEN----GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDK--TIKVWDLSIKPSLEYSINTIASVSR 231 (330)
Q Consensus 158 ~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~ 231 (330)
+++.+ +.|++||+.++ + ...+..|.+.+..++|+|||+.|+++..++ .|++||+.+++.. ....+...+..
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~ 242 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSS 242 (582)
T ss_dssp EEEEEETTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHH
T ss_pred EEEEcCCCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhh
Confidence 66655 67999999863 3 346677888899999999999999888888 8999999887555 44444555555
Q ss_pred EE--------EcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCe---Eeeee
Q psy6213 232 IK--------WRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSI---IPRAK 300 (330)
Q Consensus 232 ~~--------~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~---i~iw~ 300 (330)
++ |+|||. ++++++ .++.+++|++ ++. .. .+.+.+.+++|+ +++++++++.+.. +++|+
T Consensus 243 ~~~~~~~~~~~spdg~-~~~~~~--~~g~~~l~~~--g~~-~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGR-LAVVAR--REGRSAVFID--GER-VE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp HCCSEEEEEEECTTSC-EEEEEE--ETTEEEEEET--TEE-EC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred hhhccccceeEcCCCc-EEEEEE--cCCcEEEEEE--CCe-ec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 55 999994 677666 6999999999 432 22 344678999999 9999999888754 66665
Q ss_pred c
Q psy6213 301 N 301 (330)
Q Consensus 301 ~ 301 (330)
.
T Consensus 313 ~ 313 (582)
T 3o4h_A 313 S 313 (582)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-24 Score=179.34 Aligned_cols=241 Identities=10% Similarity=0.053 Sum_probs=171.8
Q ss_pred cccceEEEEeeCCCe-eecC--CCeEEEEEcCCcce-eeeeceeeccccccccceeeeeecccCCcEEEEEcCCC---cE
Q psy6213 4 LSPVHKHGLKADNGL-AQPS--RNVFKIFLIKDTEF-VETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG---AV 76 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i 76 (330)
...+ +++|+|+|++ ++++ ++.|.+||.++++. ......... +..+++|+| ++++++++..++ .|
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------~~~~~~~s~-dg~~l~~~~~~~~~~~i 110 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS-------SMADVDITP-DDQFAVTVTGLNHPFNM 110 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS-------CCCCEEECT-TSSEEEECCCSSSSCEE
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCC-------CccceEECC-CCCEEEEecCCCCcccE
Confidence 3445 8999999996 4444 88999999998876 433332211 123499999 999888655553 89
Q ss_pred EEEECCCCCCCceeEEecccccceeEEEEEecCCC-EEEEEecCCc-EEEEEeecCcee----eeeecCCCCeEEEEEcC
Q psy6213 77 VVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESN-WLISGSQDGT-MRLFDIRCQEST----KIFHSNTESVRDVEFNP 150 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~ 150 (330)
.+||+.+ .+....+.. .....+++|+| +++ ++++...++. |.+|++.....+ ............++|+|
T Consensus 111 ~v~d~~~---~~~~~~~~~-~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp 185 (331)
T 3u4y_A 111 QSYSFLK---NKFISTIPI-PYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP 185 (331)
T ss_dssp EEEETTT---TEEEEEEEC-CTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT
T ss_pred EEEECCC---CCeEEEEEC-CCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC
Confidence 9999987 555555554 34568999999 665 5555566688 999998754332 11123445689999999
Q ss_pred CCCcEEEEEecCCcEEEEecCCCccc---eeeeccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCcc--cccee-
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKC---FYQFTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPS--LEYSI- 223 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~- 223 (330)
+++++++++..++.|++||+.+ .+. +..+. ....+..++|+|+|++++++. .++.|.+||+.+++. .....
T Consensus 186 dg~~l~v~~~~~~~v~v~d~~~-~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~ 263 (331)
T 3u4y_A 186 DGNFAFVANLIGNSIGILETQN-PENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGH 263 (331)
T ss_dssp TSSEEEEEETTTTEEEEEECSS-TTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCEEEEEeCCCCeEEEEECCC-Ccccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccc
Confidence 9997677777789999999987 444 45555 346678999999999776655 577899999988744 11111
Q ss_pred ------ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 224 ------NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 224 ------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
........++|+|+++++++++. .++.|.+||+....
T Consensus 264 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 264 GLLIDPRPLFGANQMALNKTETKLFISAN--ISRELKVFTISGKV 306 (331)
T ss_dssp CCCCCCGGGTTCCCEEECTTSSEEEEEET--TTTEEEEEETTSCE
T ss_pred ccccCCCCcccccceEECCCCCEEEEecC--CCCcEEEEEecCCc
Confidence 11122356899999999877776 68899999998654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-25 Score=202.27 Aligned_cols=272 Identities=7% Similarity=-0.003 Sum_probs=186.7
Q ss_pred cceEEEEeeCCCeeecC--C---------CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCC
Q psy6213 6 PVHKHGLKADNGLAQPS--R---------NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG 74 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g--d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 74 (330)
.|.+++|||||++++.+ + +.+.+||+++++... +.... .....+..++|+| +++.|+.++. +
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~----~~~~~~~~~~~SP-dG~~la~~~~-~ 134 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-LDPPE----VSNAKLQYAGWGP-KGQQLIFIFE-N 134 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-CCCTT----CCSCCCSBCCBCS-STTCEEEEET-T
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEe-ccCCc----cccccccccEECC-CCCEEEEEEC-C
Confidence 48999999999995544 3 789999999887522 21111 1112257899999 9999999886 7
Q ss_pred cEEEEECCCCCCCceeEEecccccc------------------eeEEEEEecCCCEEEEEecCC----------------
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRT------------------VNKVSFHYVESNWLISGSQDG---------------- 120 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~------------------i~~i~~~~~~~~~l~~~~~d~---------------- 120 (330)
.|++|++.+ ++.......+... +.+++|+| +++.|++++.++
T Consensus 135 ~i~~~~~~~---g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~ 210 (723)
T 1xfd_A 135 NIYYCAHVG---KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIY 210 (723)
T ss_dssp EEEEESSSS---SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred eEEEEECCC---CceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCC
Confidence 899999987 4444444443333 37899999 889998887653
Q ss_pred ------------------cEEEEEeecCceeeeeecC------CCCeEEEEEcCCCCcEEEEEec----CCcEEEEecCC
Q psy6213 121 ------------------TMRLFDIRCQESTKIFHSN------TESVRDVEFNPHSPYAFASVSE----NGTIQQWDVRR 172 (330)
Q Consensus 121 ------------------~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~ 172 (330)
.|++||+.+++....+..+ ...+..++|+|+|+ ++++... +..|++||+.+
T Consensus 211 ~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 211 PTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp CCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTT
T ss_pred CcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCC
Confidence 7999999988765555543 56789999999998 4555433 35799999987
Q ss_pred Cccceeeecc-CCCCe----EEEEEcCCCCEEEE--EecCC------cEEEEe-CCCCcc--ccceeccccceEE-EEEc
Q psy6213 173 PEKCFYQFTA-HSGPI----FACDWHPEHAWLAT--ASRDK------TIKVWD-LSIKPS--LEYSINTIASVSR-IKWR 235 (330)
Q Consensus 173 ~~~~~~~~~~-~~~~i----~~~~~~~~~~~l~~--~~~dg------~i~i~d-~~~~~~--~~~~~~~~~~v~~-~~~~ 235 (330)
++....+.. +...+ ..++|+|||+.|+. +..++ .|.+|| ...+.. ..........+.. ++|+
T Consensus 290 -g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~s 368 (723)
T 1xfd_A 290 -GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD 368 (723)
T ss_dssp -CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE
T ss_pred -CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEc
Confidence 444443332 33443 37899999997765 44666 577777 344430 3333333344444 6999
Q ss_pred CCCCeEEEEeecccC--CeEEEEEccCCCc-cceEeec---CCCCeEEEEEecCCCEEEEeec
Q psy6213 236 PQRKFHLASCSLVVD--SSVNVWDIRRPYI-PLASFTE---HKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~--~~i~i~d~~~~~~-~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
|+|+.+++++. .+ +.+++|++..... ....+.. |...+..++|+|||++|+....
T Consensus 369 pdg~~l~~~~~--~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 369 EKGNKIYFLST--EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp TTTTEEEEEES--SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred CCCCEEEEEEc--CCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 99998777766 34 8899999864321 1333333 5677899999999998887543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-24 Score=178.74 Aligned_cols=266 Identities=8% Similarity=0.063 Sum_probs=183.3
Q ss_pred CCeEEEEEcCC--cceeeeeceeeccccccccceeeeeecccCCcEEEEEcC---CCcEEEEECCCCCCCceeEEecccc
Q psy6213 23 RNVFKIFLIKD--TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT---NGAVVVWNLGQISRSKQERVFNDHK 97 (330)
Q Consensus 23 d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~ 97 (330)
++.|.+|+++. ++.......... ..+..++|+| +++ |++++. ++.|.+|++.. ...+.+..+..+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~------~~p~~~a~sp-dg~-l~~~~~~~~~~~v~~~~~~~-g~~~~~~~~~~~~ 85 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAAT------QNPTYLALSA-KDC-LYSVDKEDDEGGIAAWQIDG-QTAHKLNTVVAPG 85 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEEC------SCCCCEEECT-TCE-EEEEEEETTEEEEEEEEEET-TEEEEEEEEEEES
T ss_pred CCCEEEEEEcCCCCeEEEeeeeecc------CCcceEEEcc-CCe-EEEEEecCCCceEEEEEecC-CcEEEeeeeecCC
Confidence 66788887764 443332111111 1247899999 888 555543 68999999965 2223444445577
Q ss_pred cceeEEEEEecCCCEEEEEe-cCCcEEEEEeec-Cc--eeeeeecC---------CCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 98 RTVNKVSFHYVESNWLISGS-QDGTMRLFDIRC-QE--STKIFHSN---------TESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~-~~--~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
..+..++|+| ++++|++++ .++.|.+|++.. +. .+..+... ...+.+++|+|+++ ++++...++.
T Consensus 86 ~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~ 163 (347)
T 3hfq_A 86 TPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDK 163 (347)
T ss_dssp CCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTE
T ss_pred CCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCE
Confidence 7889999998 888888777 679999999963 22 23333211 12488999999999 7888888899
Q ss_pred EEEEecCCCccce--eeecc-CCCCeEEEEEcCCCCEEEE-EecCCcEEEEeCCC--Ccc--ccceecc------ccceE
Q psy6213 165 IQQWDVRRPEKCF--YQFTA-HSGPIFACDWHPEHAWLAT-ASRDKTIKVWDLSI--KPS--LEYSINT------IASVS 230 (330)
Q Consensus 165 i~i~d~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~------~~~v~ 230 (330)
|++||+...+... ..+.. ....+..++|+|+|+++++ ...++.+.+|++.. ++. ....... ...+.
T Consensus 164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (347)
T 3hfq_A 164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAA 243 (347)
T ss_dssp EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEE
T ss_pred EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcce
Confidence 9999998423322 11222 2336788999999996655 55788999999875 321 1111111 14588
Q ss_pred EEEEcCCCCeEEEEeecccCCeEEEEEccCCC--ccceEeecCCCCeEEEEEecCCCEEEEeecC-CeEeeeec
Q psy6213 231 RIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY--IPLASFTEHKDVVSGLAWRGDPQLFIASSRV-SIIPRAKN 301 (330)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~iw~~ 301 (330)
.++|+|+|++++++.. .++.|.+|++.... ..+..+..+...+.+++|+|||++|++++.+ +.+.+|+.
T Consensus 244 ~i~~spdG~~l~v~~~--~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 244 AIRLSHDGHFLYVSNR--GYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEECTTSCEEEEEEE--TTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eEEECCCCCEEEEEeC--CCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 9999999998777776 68999999997321 2244555666678999999999988888765 89999954
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-25 Score=209.93 Aligned_cols=276 Identities=13% Similarity=0.098 Sum_probs=211.4
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCC-cceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKD-TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
.|.+.+.++.|+++ .+ ++++ ++.++||.++. +.....+..+. .+...+|+| +++.|+.+ .++.|.+
T Consensus 201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~--------~~~~~~~Sp-DG~~la~~-~~~~i~~ 269 (1045)
T 1k32_A 201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT--------DYYPRHLNT-DGRRILFS-KGGSIYI 269 (1045)
T ss_dssp CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC--------SSCEEEEEE-SSSCEEEE-ETTEEEE
T ss_pred CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC--------CcceeeEcC-CCCEEEEE-eCCEEEE
Confidence 47889999999998 55 5555 89999998764 22222222221 135679999 99988887 4889999
Q ss_pred EECCCCCCCceeEEecc-----------cccceeEEEEE-ecCCCEEEEEecCCcEEEEEeecCceeeeeecCCC-CeEE
Q psy6213 79 WNLGQISRSKQERVFND-----------HKRTVNKVSFH-YVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTE-SVRD 145 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~-----------~~~~i~~i~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~v~~ 145 (330)
|++.. ..+..+.. |...+.+++|+ | +++.+++++ ++.|.+|++.+++... +..+.. .+..
T Consensus 270 ~d~~~----~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~ 342 (1045)
T 1k32_A 270 FNPDT----EKIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVR 342 (1045)
T ss_dssp ECTTT----CCEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEE
T ss_pred ecCCc----eEeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEe
Confidence 99843 22334433 44579999999 9 888888877 7899999998776543 555666 8999
Q ss_pred EEEcCCCCcEEEEEecCCcEE-EEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec
Q psy6213 146 VEFNPHSPYAFASVSENGTIQ-QWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN 224 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 224 (330)
++|+ +++. ++.++.++.+. +||+.. .. ...+..|...+..++|+|+|++|++++.++.|++||+.+++.......
T Consensus 343 ~~~s-dg~~-l~~~s~~~~l~~~~d~~~-~~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~ 418 (1045)
T 1k32_A 343 RGGD-TKVA-FIHGTREGDFLGIYDYRT-GK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 418 (1045)
T ss_dssp ECSS-SEEE-EEEEETTEEEEEEEETTT-CC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred eeEc-CCCe-EEEEECCCceEEEEECCC-CC-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC
Confidence 9999 8884 77777788888 889876 33 233447778899999999999999999999999999998865544446
Q ss_pred cccceEEEEEcCCCCeEEEEeecc-------cCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 225 TIASVSRIKWRPQRKFHLASCSLV-------VDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 225 ~~~~v~~~~~~~~~~~l~~~~~~~-------~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
+...+..++|+|||+++++++... .++.|++||+.+++ ...+..|...+..++|+|||+.|++++.++...
T Consensus 419 ~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~ 496 (1045)
T 1k32_A 419 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDP 496 (1045)
T ss_dssp SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCC
T ss_pred CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCc
Confidence 778889999999999876665410 12599999998875 566778888899999999999999999988888
Q ss_pred eeec
Q psy6213 298 RAKN 301 (330)
Q Consensus 298 iw~~ 301 (330)
+|..
T Consensus 497 ~~~~ 500 (1045)
T 1k32_A 497 SPDR 500 (1045)
T ss_dssp EECS
T ss_pred Ccch
Confidence 7763
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=179.72 Aligned_cols=261 Identities=7% Similarity=-0.019 Sum_probs=188.9
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEE-EEEcCCCcEEEEECCCCCCCceeEEecc-
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHI-ATGATNGAVVVWNLGQISRSKQERVFND- 95 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~- 95 (330)
++++ ++.|.+||..+++....+...... ..+..++|+| +++.+ +++..++.|.+||+.+ .+....+..
T Consensus 5 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~ 75 (337)
T 1pby_B 5 LAPARPDKLVVIDTEKMAVDKVITIADAG-----PTPMVPMVAP-GGRIAYATVNKSESLVKIDLVT---GETLGRIDLS 75 (337)
T ss_dssp EEEETTTEEEEEETTTTEEEEEEECTTCT-----TCCCCEEECT-TSSEEEEEETTTTEEEEEETTT---CCEEEEEECC
T ss_pred EEcCCCCeEEEEECCCCcEEEEEEcCCCC-----CCccceEEcC-CCCEEEEEeCCCCeEEEEECCC---CCeEeeEEcC
Confidence 4444 999999999998876655432210 0147899999 77654 5666788999999987 455544432
Q ss_pred ----cccceeEEEEEecCCCEEEEEe------------cCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 96 ----HKRTVNKVSFHYVESNWLISGS------------QDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 96 ----~~~~i~~i~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
+...+..++|+| ++++++++. .++.|.+||+.+++....+.. ...+.+++|+|++++ ++++
T Consensus 76 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~-l~~~ 152 (337)
T 1pby_B 76 TPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSK-LYGL 152 (337)
T ss_dssp BTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSC-EEEE
T ss_pred CcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCE-EEEe
Confidence 123678899998 888888875 579999999998888777764 456788999999996 4554
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCC------------------------cEEEEeCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDK------------------------TIKVWDLSI 215 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~i~i~d~~~ 215 (330)
++.|++||+.+ .+....+..+.. ...+.|+|+++.++..+.++ .|.+||+.+
T Consensus 153 --~~~i~~~d~~~-~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 228 (337)
T 1pby_B 153 --GRDLHVMDPEA-GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp --SSSEEEEETTT-TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred --CCeEEEEECCC-CcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCC
Confidence 68999999987 444544443321 12347899988665554332 468999988
Q ss_pred Ccccc-ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 216 KPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 216 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
++... ....+...+..++|+|++++++++ ++.|.+||+.+++. +..+.. ...+.+++|+|++++|++++.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~ 301 (337)
T 1pby_B 229 GEMAMREVRIMDVFYFSTAVNPAKTRAFGA-----YNVLESFDLEKNAS-IKRVPL-PHSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEE-----ESEEEEEETTTTEE-EEEEEC-SSCCCEEEECTTSCEEEEESBSS
T ss_pred CCceEeecCCCCCceeeEEECCCCCEEEEe-----CCeEEEEECCCCcC-cceecC-CCceeeEEECCCCCEEEEEcCCC
Confidence 75431 122344568889999999985544 68999999988764 444443 35678999999999999999999
Q ss_pred eEeeeecc
Q psy6213 295 IIPRAKNI 302 (330)
Q Consensus 295 ~i~iw~~~ 302 (330)
.|++|+..
T Consensus 302 ~i~v~d~~ 309 (337)
T 1pby_B 302 DLAAYDAE 309 (337)
T ss_dssp EEEEEETT
T ss_pred cEEEEECc
Confidence 99999864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.9e-25 Score=205.55 Aligned_cols=277 Identities=10% Similarity=0.052 Sum_probs=210.3
Q ss_pred CcccceEEEEe-eCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEE-EE
Q psy6213 3 YLSPVHKHGLK-ADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVV-VW 79 (330)
Q Consensus 3 H~~~v~~~~~s-~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~-iw 79 (330)
|.+.+.+++|+ |||++++.+ ++.+.+|+...++... +..+.. ..+..++|+ +++.|+.++.++.+. +|
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~~~~------~~~~~~~~s--dg~~l~~~s~~~~l~~~~ 364 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLR------IRYVRRGGD--TKVAFIHGTREGDFLGIY 364 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSC------EEEEEECSS--SEEEEEEEETTEEEEEEE
T ss_pred cccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccCCCc------ceEEeeeEc--CCCeEEEEECCCceEEEE
Confidence 45679999999 999997777 9999999998776443 221111 135889999 778888888788888 88
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
++.. ... ..+..|...+..++|+| ++++|++++.++.|++||+.+++.......+...+.+++|+|++++ ++++
T Consensus 365 d~~~---~~~-~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~-la~~ 438 (1045)
T 1k32_A 365 DYRT---GKA-EKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF-IAYG 438 (1045)
T ss_dssp ETTT---CCE-EECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE-EEEE
T ss_pred ECCC---CCc-eEecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCe-EEEE
Confidence 9876 333 33447778999999999 8999999999999999999999888777778888999999999996 5555
Q ss_pred ecC----------CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc-----------
Q psy6213 160 SEN----------GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS----------- 218 (330)
Q Consensus 160 ~~d----------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------- 218 (330)
+.+ +.|++||+.+ ++ ...+..|...+..++|+|+|++|+.++.++...+|+......
T Consensus 439 ~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (1045)
T 1k32_A 439 FPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI 516 (1045)
T ss_dssp EEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEE
T ss_pred ecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEE
Confidence 543 4899999987 33 566777888899999999999999999887777776432210
Q ss_pred --------------------------------ccceeccccceEEEEEcCCCCeEEEE----------eecccCCeEEEE
Q psy6213 219 --------------------------------LEYSINTIASVSRIKWRPQRKFHLAS----------CSLVVDSSVNVW 256 (330)
Q Consensus 219 --------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~----------~~~~~~~~i~i~ 256 (330)
......+...+..++++|++..+++. .+......|.+|
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 596 (1045)
T 1k32_A 517 PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 596 (1045)
T ss_dssp ESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEE
T ss_pred EeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEE
Confidence 00111134668899999999865541 111135688899
Q ss_pred EccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 257 DIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 257 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
|+.+++. ..+. ..+.+++|+|||+.|++++.+ .+++|+..
T Consensus 597 d~~~~~~--~~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~ 636 (1045)
T 1k32_A 597 DVKTRKV--TEVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPL 636 (1045)
T ss_dssp ETTTCCE--EEEE---EEEEEEEECTTSCEEEEEETT-SCEEEEES
T ss_pred ECCCCcE--EEee---cCcceEEECCCCCEEEEEcCC-cEEEEeCc
Confidence 9988764 3333 568899999999999998866 79999864
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-24 Score=175.78 Aligned_cols=251 Identities=8% Similarity=0.069 Sum_probs=171.0
Q ss_pred CcccceEEEEeeCCCeeecC----CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc-CCCcEE
Q psy6213 3 YLSPVHKHGLKADNGLAQPS----RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA-TNGAVV 77 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~ 77 (330)
+...+..++|+|||++++++ ++.|.+|++++++.......... ...+..++|+| ++++|++++ .++.+.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~-----~~~p~~~a~sp-dg~~l~~~~~~~~~v~ 111 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAP-----GTPPAYVAVDE-ARQLVYSANYHKGTAE 111 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEE-----SCCCSEEEEET-TTTEEEEEETTTTEEE
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecC-----CCCCEEEEECC-CCCEEEEEeCCCCEEE
Confidence 34567789999999964433 48999999987664332221111 12247899999 898888777 678999
Q ss_pred EEECCCCCCCceeEEecc---------cccceeEEEEEecCCCEEEEEecCCcEEEEEee-cCceee--eeec-CCCCeE
Q psy6213 78 VWNLGQISRSKQERVFND---------HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR-CQESTK--IFHS-NTESVR 144 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~---------~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~--~~~~-~~~~v~ 144 (330)
+|++........+..+.. +...+.+++|+| +++++++...++.|.+||+. +++... .+.. ....+.
T Consensus 112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 999964332333333321 123478899999 67777777778899999998 454322 2222 233678
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEecCCC-ccc--eeeeccCC------CCeEEEEEcCCCCEEE-EEecCCcEEEEeCC
Q psy6213 145 DVEFNPHSPYAFASVSENGTIQQWDVRRP-EKC--FYQFTAHS------GPIFACDWHPEHAWLA-TASRDKTIKVWDLS 214 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~-~~~--~~~~~~~~------~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~ 214 (330)
.++|+|++++++++...++.+.+|++... +.. ...+.... ..+..++|+|+|++|+ +...++.|.+||+.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 89999999976776778899999998741 221 22222222 3488899999999774 55568999999987
Q ss_pred CCcc---ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEc--cCCC
Q psy6213 215 IKPS---LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI--RRPY 262 (330)
Q Consensus 215 ~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~--~~~~ 262 (330)
.... ......+...+..++|+|+|++++++.. .++.+.+|++ .+++
T Consensus 271 ~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 271 ADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ--NTDNATLYARDLTSGK 321 (347)
T ss_dssp GGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET--TTTEEEEEEECTTTCC
T ss_pred CCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc--CCCcEEEEEEeCCCCe
Confidence 3311 2222223456889999999998777776 5699999955 4444
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=189.59 Aligned_cols=201 Identities=15% Similarity=0.206 Sum_probs=153.1
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCC-------CceeE-----EecccccceeEEEEEecCCCEEE----EEe
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISR-------SKQER-----VFNDHKRTVNKVSFHYVESNWLI----SGS 117 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~-----~~~~~~~~i~~i~~~~~~~~~l~----~~~ 117 (330)
++.+++++ ++.++++++.++ +++|+...... ..... ....+...|.+++|+| ++++|+ +|+
T Consensus 39 ~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sgs 115 (434)
T 2oit_A 39 SSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSSE 115 (434)
T ss_dssp CBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEETT
T ss_pred ccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEeccC
Confidence 58899999 889999998887 88987532100 00111 1123556799999998 888888 788
Q ss_pred cCCcEEEEEeecC--------ce---eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCC
Q psy6213 118 QDGTMRLFDIRCQ--------ES---TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGP 186 (330)
Q Consensus 118 ~d~~i~i~d~~~~--------~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 186 (330)
.|+.|++||++++ +. ...+.+|...|.+++|+|++..+|++++.||+|++||+++. .......+|...
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~~~~~~~~~~ 194 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKVCATLPSTVA 194 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEEEEEECGGGC
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cceeeccCCCCc
Confidence 8999999999765 22 34455688999999999985558999999999999999984 445555668899
Q ss_pred eEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee-------ccccceEEEEEcCCCCeEEEEeecccCC------eE
Q psy6213 187 IFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI-------NTIASVSRIKWRPQRKFHLASCSLVVDS------SV 253 (330)
Q Consensus 187 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~~~~~------~i 253 (330)
|.+++|+|+|++|++|+.||.|++||.+ ++...... .+...+.+++|++++.++++... .+| .+
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~--~dg~~~~~~~v 271 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA--ADGTLETSPDV 271 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE--TTCCSSSCCEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEcc--CCCccCCCCce
Confidence 9999999999999999999999999998 32221111 12348999999999987666555 343 49
Q ss_pred EEEEccCC
Q psy6213 254 NVWDIRRP 261 (330)
Q Consensus 254 ~i~d~~~~ 261 (330)
++|++++.
T Consensus 272 ~i~~l~~~ 279 (434)
T 2oit_A 272 VMALLPKK 279 (434)
T ss_dssp EEEECCCT
T ss_pred EEEEeccC
Confidence 99999865
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-23 Score=173.26 Aligned_cols=265 Identities=8% Similarity=0.052 Sum_probs=179.9
Q ss_pred CCeEEEEEcC--CcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC----CcEEEEECCCC-CCCceeEEecc
Q psy6213 23 RNVFKIFLIK--DTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN----GAVVVWNLGQI-SRSKQERVFND 95 (330)
Q Consensus 23 d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~-~~~~~~~~~~~ 95 (330)
++.|.+|.++ +++.......+ ...+..++|+| ++++|++++.+ +.|.+|++... ...+.+.....
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~~-------~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~ 97 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDAE-------VANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT 97 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEEE-------CSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred CCCEEEEEEeCCCCCEEEeeccc-------CCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc
Confidence 6789999775 45544333221 12247899999 99999988875 79999998752 12233333444
Q ss_pred cccceeEEEEEecCCCEEEEEe-cCCcEEEEEeecCceeeee------ec--------CCCCeEEEEEcCCCCcEEEEEe
Q psy6213 96 HKRTVNKVSFHYVESNWLISGS-QDGTMRLFDIRCQESTKIF------HS--------NTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 96 ~~~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~------~~--------~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
+......+++ +++++++++ .++.|.+|++.....+..+ .+ +...+.+++|+|++++++++..
T Consensus 98 ~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 174 (361)
T 3scy_A 98 MGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL 174 (361)
T ss_dssp SSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET
T ss_pred CCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC
Confidence 4456666666 466666555 6889999999754332211 11 1223578999999997666666
Q ss_pred cCCcEEEEecCCCcc------c------eeeeccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCccc--cce---
Q psy6213 161 ENGTIQQWDVRRPEK------C------FYQFTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPSL--EYS--- 222 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~------~------~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~--- 222 (330)
.++.|.+|++..... . ......+...+..++|+|+|+++++++ .++.|.+||+.++... ...
T Consensus 175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~ 254 (361)
T 3scy_A 175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD 254 (361)
T ss_dssp TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC
T ss_pred CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC
Confidence 689999999876432 1 111223445678999999999887777 6899999999865321 111
Q ss_pred eccccceEEEEEcCCCCeEEEEeeccc-CCeEEEEEcc--CCCc-cceEeecCCCCeEEEEEecCCCEEEEee-cCCeEe
Q psy6213 223 INTIASVSRIKWRPQRKFHLASCSLVV-DSSVNVWDIR--RPYI-PLASFTEHKDVVSGLAWRGDPQLFIASS-RVSIIP 297 (330)
Q Consensus 223 ~~~~~~v~~~~~~~~~~~l~~~~~~~~-~~~i~i~d~~--~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~ 297 (330)
..+......++|+|+|++++++.. . ++.|.+|++. ++.. .+..+.. ...+.+++|+|||++|++++ .++.|.
T Consensus 255 ~~~~~~~~~i~~spdg~~l~v~~~--~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 255 TVNAQGSGDIHLSPDGKYLYASNR--LKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp SSCCCCEEEEEECTTSSEEEEEEC--SSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred CCCCCCcccEEECCCCCEEEEECC--CCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEE
Confidence 112345689999999998777765 4 5899999996 3332 2333333 45788999999999888887 678999
Q ss_pred eeec
Q psy6213 298 RAKN 301 (330)
Q Consensus 298 iw~~ 301 (330)
+|+.
T Consensus 332 v~~~ 335 (361)
T 3scy_A 332 IFER 335 (361)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9854
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-24 Score=176.47 Aligned_cols=237 Identities=12% Similarity=0.059 Sum_probs=182.5
Q ss_pred eeeeeecccCCcEEEEEcC-------CCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCC-EEEEEecCCcEEEE
Q psy6213 54 CNDVAWSCIEENHIATGAT-------NGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESN-WLISGSQDGTMRLF 125 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~d~~i~i~ 125 (330)
+..++|+| +++++++++. ++.|.+||..+ .+....+.. ...+..++|+| +++ ++++...++.|.+|
T Consensus 43 ~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~---~~~~~~~~~-~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 43 AYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVT---LEVTQAIHN-DLKPFGATINN-TTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTT---CCEEEEEEE-SSCCCSEEEET-TTTEEEEEETTTTEEEEE
T ss_pred ccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCC---CeEEEEEec-CCCcceEEECC-CCCEEEEEecCCCEEEEE
Confidence 57899999 8888877764 56899999987 555555543 34578899998 666 45555667999999
Q ss_pred EeecCceeeeeecCCCC---------eEEEEEcCCCCcEEEEE-ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC
Q psy6213 126 DIRCQESTKIFHSNTES---------VRDVEFNPHSPYAFASV-SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE 195 (330)
Q Consensus 126 d~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~ 195 (330)
|..+++.+..+..+... +.+++|+|++++++++. +.++.|.+||+.+ .+....+..+...+..++|+|+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN-IKLKTAIQNTGKMSTGLALDSE 195 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT-TEEEEEECCCCTTCCCCEEETT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC-CceEEEecCCCCccceEEECCC
Confidence 99999888777654322 78899999999655554 3578899999987 5556666645666889999999
Q ss_pred CCEEEEEecCCcEEEEeCCCCccccceec----cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC
Q psy6213 196 HAWLATASRDKTIKVWDLSIKPSLEYSIN----TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH 271 (330)
Q Consensus 196 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 271 (330)
++++++++.++.+.+||..+++....... +...+..++|+|++++++++.. .++.|.+||+.+++. +..+...
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~-~~~~~~~ 272 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRNGNI-LAKVAAP 272 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTTCCE-EEEEECS
T ss_pred CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCCCcE-EEEEEcC
Confidence 99999999999999999998855433322 3456788999999998777776 579999999988875 5555443
Q ss_pred CCCeEEEEEecCCCEEEEee-cCCeEeeeecc
Q psy6213 272 KDVVSGLAWRGDPQLFIASS-RVSIIPRAKNI 302 (330)
Q Consensus 272 ~~~v~~~~~~~~~~~l~s~~-~dg~i~iw~~~ 302 (330)
. ..+++|+|+++.++.++ .++.|.+|+..
T Consensus 273 ~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 273 E--SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp S--CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C--CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 3 36799999999666555 68999999854
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-25 Score=198.36 Aligned_cols=270 Identities=10% Similarity=0.094 Sum_probs=182.8
Q ss_pred cceEEEEeeCCCeeecC-CCeEEEEEcCCcce--eeeeceeecc---------ccccccceeeeeecccCCcEEEEEcCC
Q psy6213 6 PVHKHGLKADNGLAQPS-RNVFKIFLIKDTEF--VETHNLRVGK---------NINLNFSCNDVAWSCIEENHIATGATN 73 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~--~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~l~~~~~d 73 (330)
.+..+.|. ++.++..+ ++ | +||+.+++. .......... .......+.+++|+| + +.++.+. +
T Consensus 27 ~~~~~~w~-g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp-d-~~~~~~~-~ 100 (706)
T 2z3z_A 27 YVVGLQWM-GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAG-R-GLVVLFT-Q 100 (706)
T ss_dssp -CTTCEEE-TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETT-T-TEEEEEE-T
T ss_pred cCCCCcCc-CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECC-C-CeEEEEE-C
Confidence 35667888 44455555 66 8 999999876 3322211100 000013479999999 6 5555543 5
Q ss_pred CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec-----CceeeeeecCCCC------
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC-----QESTKIFHSNTES------ 142 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~------ 142 (330)
+.+++||+.+ .+. ..+..+...+.+++|+| +++.|+++ .++.|++||+.+ ++.......+...
T Consensus 101 ~~i~~~d~~~---~~~-~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 174 (706)
T 2z3z_A 101 GGLVGFDMLA---RKV-TYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA 174 (706)
T ss_dssp TEEEEEETTT---TEE-EEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSC
T ss_pred CEEEEEECCC---Cce-EEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccc
Confidence 9999999987 333 34445677899999999 88888885 689999999998 7765544433332
Q ss_pred --------eEEEEEcCCCCcEEEEEe---------------------------------cCCcEEEEecCCCccceeee-
Q psy6213 143 --------VRDVEFNPHSPYAFASVS---------------------------------ENGTIQQWDVRRPEKCFYQF- 180 (330)
Q Consensus 143 --------v~~~~~~~~~~~~~~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~- 180 (330)
+.+++|+|+|++ |++++ .+..|++||+.++ +.....
T Consensus 175 ~~~ee~~~~~~~~~SpDg~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-~~~~~~~ 252 (706)
T 2z3z_A 175 VHQREFGIEKGTFWSPKGSC-LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-KTVYLQT 252 (706)
T ss_dssp CGGGCTTCCCSEEECTTSSE-EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT-EEEECCC
T ss_pred hhhhhcCCCceEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC-ceEeecc
Confidence 488999999995 66665 3467999999873 322222
Q ss_pred -ccCCCCeEEEEEcCCCCEEEEEecCC-----cEEEEeCCCCcccccee--cccc---ceEEEEEcC--CCCeEEEEeec
Q psy6213 181 -TAHSGPIFACDWHPEHAWLATASRDK-----TIKVWDLSIKPSLEYSI--NTIA---SVSRIKWRP--QRKFHLASCSL 247 (330)
Q Consensus 181 -~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~--~~~~---~v~~~~~~~--~~~~l~~~~~~ 247 (330)
..|...+.+++|+|||+.|++++.++ .|++||+.+++...... .... .+..++|+| +|++ +++++
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~-l~~~~- 330 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQF-IWQSR- 330 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEE-EEEEC-
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEE-EEEEc-
Confidence 24667799999999999999988776 89999998873322222 1111 246789999 9996 55555
Q ss_pred ccCCeEEEEEcc-CCCccceEeecCCCCeEE-EEEecCCCEEEEeecC
Q psy6213 248 VVDSSVNVWDIR-RPYIPLASFTEHKDVVSG-LAWRGDPQLFIASSRV 293 (330)
Q Consensus 248 ~~~~~i~i~d~~-~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d 293 (330)
.++.+++|++. ++.. ...+..+...+.. ++|+|+++.|+.++.+
T Consensus 331 -~~g~~~l~~~~~~~~~-~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 331 -RDGWNHLYLYDTTGRL-IRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp -TTSSCEEEEEETTSCE-EEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred -cCCccEEEEEECCCCE-EEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 58889999887 3433 6667777777877 7999999988766554
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=176.82 Aligned_cols=248 Identities=9% Similarity=0.045 Sum_probs=180.3
Q ss_pred cceEEEEeeCCCe-eec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc-----------
Q psy6213 6 PVHKHGLKADNGL-AQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA----------- 71 (330)
Q Consensus 6 ~v~~~~~s~~~~~-~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------- 71 (330)
.+..++|+|+|++ +++ . ++.|.+||+.+++....+...... .....+..++|+| ++++++++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--ERVKSLFGAALSP-DGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--EEEECTTCEEECT-TSSEEEEEEEEEEECSSCEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--cccccccceEECC-CCCEEEEEeccccccccccc
Confidence 4789999999986 344 4 899999999998876655432200 0011247899999 888888885
Q ss_pred -CCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcC
Q psy6213 72 -TNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150 (330)
Q Consensus 72 -~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 150 (330)
.++.|.+||+.+ .+....+.. ...+.+++|+| ++++++++ ++.|++||+.+++....+..+.. ...+.|+|
T Consensus 112 ~~~~~i~v~d~~~---~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~ 183 (337)
T 1pby_B 112 VQPTRVALYDAET---LSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQP 183 (337)
T ss_dssp ECCCEEEEEETTT---TEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCC
T ss_pred ccCceEEEEECCC---CcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCC
Confidence 579999999987 555555543 45678899998 77877777 68899999999888777664431 11237899
Q ss_pred CCCcEEEEEecCC-----------------------cEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCc
Q psy6213 151 HSPYAFASVSENG-----------------------TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKT 207 (330)
Q Consensus 151 ~~~~~~~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 207 (330)
++..+++++..++ .|.+||+.+.......+..+...+.+++|+|++++++++ ++.
T Consensus 184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~ 261 (337)
T 1pby_B 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV 261 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE
T ss_pred CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe
Confidence 9886544443333 468999987443333445566778899999999999888 689
Q ss_pred EEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC
Q psy6213 208 IKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH 271 (330)
Q Consensus 208 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 271 (330)
|.+||+.+++... .......+.+++|+|+++++++++ .++.|.+||+.+++. +..+..+
T Consensus 262 v~~~d~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~---~~~~i~v~d~~~~~~-~~~~~~~ 320 (337)
T 1pby_B 262 LESFDLEKNASIK-RVPLPHSYYSVNVSTDGSTVWLGG---ALGDLAAYDAETLEK-KGQVDLP 320 (337)
T ss_dssp EEEEETTTTEEEE-EEECSSCCCEEEECTTSCEEEEES---BSSEEEEEETTTCCE-EEEEECG
T ss_pred EEEEECCCCcCcc-eecCCCceeeEEECCCCCEEEEEc---CCCcEEEEECcCCcE-EEEEEcC
Confidence 9999998874433 333445678999999999877664 599999999998865 5555443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=196.29 Aligned_cols=274 Identities=9% Similarity=0.010 Sum_probs=193.8
Q ss_pred eEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC---------CCcEE
Q psy6213 8 HKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT---------NGAVV 77 (330)
Q Consensus 8 ~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~ 77 (330)
..++|+|||++++++ |+.|++||+.+++.......+... ...+.+++||| ++++|++++. ++.|+
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMK----SVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHH----TTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccc----ccceeeEEECC-CCCeEEEEecCceeEEeecceEEE
Confidence 378999999887777 999999999998866554433221 11258999999 9999998876 68999
Q ss_pred EEECCCCCCCcee--EEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee-cCCCCe-----------
Q psy6213 78 VWNLGQISRSKQE--RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH-SNTESV----------- 143 (330)
Q Consensus 78 iw~~~~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v----------- 143 (330)
+||+.+ ++.. ..+ ...+..++|+| +++.|+.+. ++.|++||+.+++...... ++...+
T Consensus 94 ~~d~~~---g~~~~~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~e 165 (719)
T 1z68_A 94 IYDLSN---GEFVRGNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEE 165 (719)
T ss_dssp EEETTT---TEECCSSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHH
T ss_pred EEECCC---Cccccceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeee
Confidence 999987 3331 112 25688999999 888888876 7899999998877654332 222212
Q ss_pred ------EEEEEcCCCCcEEEEEecCC----------------------------------cEEEEecCCCccce------
Q psy6213 144 ------RDVEFNPHSPYAFASVSENG----------------------------------TIQQWDVRRPEKCF------ 177 (330)
Q Consensus 144 ------~~~~~~~~~~~~~~~~~~dg----------------------------------~i~i~d~~~~~~~~------ 177 (330)
.+++|+|+|++ |++++.|. .|++||+.++ ...
T Consensus 166 e~~~~~~~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~~~~~~~~~ 243 (719)
T 1z68_A 166 EMLATKYALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-AYVGPQEVP 243 (719)
T ss_dssp HTTCSSCCEEECTTSSE-EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-HHHCCEECC
T ss_pred ecccCcccEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-CccceeEcc
Confidence 48999999995 66655432 7889999873 321
Q ss_pred --eeeccCCCCeEEEEEcCCCCEEEEEecCC----cEEEEe----CCCCccccce----eccccceE-----EEEEcCCC
Q psy6213 178 --YQFTAHSGPIFACDWHPEHAWLATASRDK----TIKVWD----LSIKPSLEYS----INTIASVS-----RIKWRPQR 238 (330)
Q Consensus 178 --~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d----~~~~~~~~~~----~~~~~~v~-----~~~~~~~~ 238 (330)
..+..|...+.+++|+||++++++....+ .|.+|| ..+++..... ..+...+. .+.|+|||
T Consensus 244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 12345778899999999988777754332 488899 7776544333 24455555 78999999
Q ss_pred CeEEEE-eecccCC--eEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC-----CeEeeeec
Q psy6213 239 KFHLAS-CSLVVDS--SVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV-----SIIPRAKN 301 (330)
Q Consensus 239 ~~l~~~-~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iw~~ 301 (330)
+.++.. .. .++ .|.+||+.+++ ...+..+...+..+.+. +++.|+..+.+ +..++|..
T Consensus 324 ~~l~~~~~~--~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 324 ISYYKIFSD--KDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp SCEEEEEEC--TTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred CeEEEEEEc--cCCceEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence 975553 33 244 67777877654 45565666678888877 88877777665 78888864
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=188.97 Aligned_cols=232 Identities=9% Similarity=0.010 Sum_probs=174.3
Q ss_pred cceeeeeecccCCcEEEEEcC-CCcEEEEECCCCCCCceeEEecccc-cceeEEEEEecCCCEEEEEec---CCcEEEEE
Q psy6213 52 FSCNDVAWSCIEENHIATGAT-NGAVVVWNLGQISRSKQERVFNDHK-RTVNKVSFHYVESNWLISGSQ---DGTMRLFD 126 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~---d~~i~i~d 126 (330)
.+|.+++|+| +++.||+++. ||+++||+++. +.. ..+..+. ..+..++|+| + +++++++. +....+|.
T Consensus 22 ~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~---g~~-~~lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 22 VEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDG---GET-VKLNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp SCEEEEEEEE-TTTEEEEEEEETTEEEEEEEET---TEE-EECCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEE
T ss_pred cchheeecCC-CCCeEEEEEccCCceeEEEEcC---CCc-EeeecccccccccccCCC-C-eEEEEeccCCCCcceEEEE
Confidence 4579999999 9999998877 99999999854 333 4444454 6899999998 5 77777765 45667776
Q ss_pred eec--CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec
Q psy6213 127 IRC--QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 127 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
++. ......+.. .......+|+|+++.++++...++.+.+||+.+ ++..... .+.. .+++|+|||++|++++.
T Consensus 95 ~~~~~~g~~~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~-g~~~~l~-~~~~--~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 95 VNTSRPGEEQRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDG-GGLRELA-RLPG--FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp EETTSTTCCEECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEET-TEEEEEE-EESS--CEEEEEEETTEEEEEEE
T ss_pred EeccCCCccccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccC-CcEEEee-cCCC--ceEEECCCCCEEEEEEE
Confidence 654 222223332 234557789999876666666666677999987 3333333 2333 78999999999998887
Q ss_pred C----CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCC--eEEEEEccCCCccceEeecCCCCeEEE
Q psy6213 205 D----KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDS--SVNVWDIRRPYIPLASFTEHKDVVSGL 278 (330)
Q Consensus 205 d----g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~ 278 (330)
+ +.|++||+.+++. .....+...+..++|+|||+.++ ++. .++ .|++||+.+++. . .+..|...+..+
T Consensus 170 ~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~-~~~--~~~~~~i~~~d~~~~~~-~-~~~~~~~~~~~~ 243 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTA-GLE--TAREARLVTVDPRDGSV-E-DLELPSKDFSSY 243 (582)
T ss_dssp EETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEE-EEE--CSSCEEEEEECTTTCCE-E-ECCCSCSHHHHH
T ss_pred cCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEE-Ecc--CCCeeEEEEEcCCCCcE-E-EccCCCcChhhh
Confidence 7 7899999988744 34556677889999999999866 554 577 899999998875 3 667777777777
Q ss_pred E--------EecCCCEEEEeecCCeEeeeec
Q psy6213 279 A--------WRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 279 ~--------~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
+ |+|||.++++++.||.+++|..
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 7 9999999999999999999986
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-22 Score=166.22 Aligned_cols=265 Identities=11% Similarity=0.114 Sum_probs=170.0
Q ss_pred CcccceEEEEeeCCCeeecC--C----CeEEEEEcCC--cceeeeeceeeccccccccceeeeeecccCCcEEEEEc-CC
Q psy6213 3 YLSPVHKHGLKADNGLAQPS--R----NVFKIFLIKD--TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA-TN 73 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g--d----~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d 73 (330)
|...+..++|+|||+++.++ + +.+.+|+++. ++........... .....+++ ++++|++++ .+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~-----~~p~~~~~---dg~~l~~~~~~~ 119 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG-----ADPCYLTT---NGKNIVTANYSG 119 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS-----SCEEEEEE---CSSEEEEEETTT
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC-----CCcEEEEE---CCCEEEEEECCC
Confidence 34567789999999984444 4 7999999876 4433322222111 12355666 455555554 68
Q ss_pred CcEEEEECCCCCCCceeEEe---c--------ccccceeEEEEEecCCCEEEEEe-cCCcEEEEEeecCce------e--
Q psy6213 74 GAVVVWNLGQISRSKQERVF---N--------DHKRTVNKVSFHYVESNWLISGS-QDGTMRLFDIRCQES------T-- 133 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~---~--------~~~~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------~-- 133 (330)
+.+.+|++............ . .+...+.+++|+| +++++++++ .++.|.+|++..... +
T Consensus 120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~ 198 (361)
T 3scy_A 120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLT 198 (361)
T ss_dssp TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEE
T ss_pred CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceee
Confidence 89999999753222211111 1 1123457899999 777655544 588999999875432 1
Q ss_pred -----eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc--eeee---ccCCCCeEEEEEcCCCCEEEEEe
Q psy6213 134 -----KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC--FYQF---TAHSGPIFACDWHPEHAWLATAS 203 (330)
Q Consensus 134 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~--~~~~---~~~~~~i~~~~~~~~~~~l~~~~ 203 (330)
.........+..++|+|++++++++...++.|.+||+.+ +.. +..+ ..+......++|+|+|++|+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~ 277 (361)
T 3scy_A 199 KGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASN 277 (361)
T ss_dssp EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEE
T ss_pred cccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEEC
Confidence 112224456789999999996555555789999999985 322 2222 23335578999999999987776
Q ss_pred cC--CcEEEEeCC--CCcc-ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc--CCCccceEe--ecCCCC
Q psy6213 204 RD--KTIKVWDLS--IKPS-LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR--RPYIPLASF--TEHKDV 274 (330)
Q Consensus 204 ~d--g~i~i~d~~--~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~--~~~~~~~~~--~~~~~~ 274 (330)
.+ +.|.+|++. +++. ..........+..++|+|+|++++++.. .++.|.+|++. +++. ... ..+...
T Consensus 278 ~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~--~~~~v~v~~~d~~~g~~--~~~~~~~~~~~ 353 (361)
T 3scy_A 278 RLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACR--DTNVIQIFERDQATGLL--TDIKKDIKVDK 353 (361)
T ss_dssp CSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEET--TTTEEEEEEECTTTCCE--EECSCCEECSS
T ss_pred CCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEEC--CCCCEEEEEEECCCCcE--eecceeeeCCC
Confidence 54 899999996 3321 1122222456889999999998888776 58999997654 4543 222 223457
Q ss_pred eEEEEEe
Q psy6213 275 VSGLAWR 281 (330)
Q Consensus 275 v~~~~~~ 281 (330)
+.|+.|.
T Consensus 354 p~~v~~~ 360 (361)
T 3scy_A 354 PVCLKFV 360 (361)
T ss_dssp EEEEEEE
T ss_pred CeEEEEc
Confidence 8888885
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-23 Score=174.21 Aligned_cols=273 Identities=10% Similarity=0.029 Sum_probs=180.2
Q ss_pred EEEeeCCCeeecC---CC--eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 10 HGLKADNGLAQPS---RN--VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 10 ~~~s~~~~~~~~g---d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
.+|+|||++++.. ++ .|.+||+++++.......+... +..++|+| +++.|+.++.++.|++||+.+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~-------~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~- 111 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDN-------TFGGFLSP-DDDALFYVKDGRNLMRVDLAT- 111 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBC-------SSSCEECT-TSSEEEEEETTTEEEEEETTT-
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCC-------ccceEEcC-CCCEEEEEeCCCeEEEEECCC-
Confidence 7899999984433 45 4888899888766544333221 23578999 999999999999999999988
Q ss_pred CCCceeEEecccccceeEEEE--EecCCCEEEEEe----------------------cCCcEEEEEeecCceeeeeecCC
Q psy6213 85 SRSKQERVFNDHKRTVNKVSF--HYVESNWLISGS----------------------QDGTMRLFDIRCQESTKIFHSNT 140 (330)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~i~~--~~~~~~~l~~~~----------------------~d~~i~i~d~~~~~~~~~~~~~~ 140 (330)
.+....+..+...+....| +| ++.+++... .+..|++||+.+++..... .+.
T Consensus 112 --g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~ 187 (388)
T 3pe7_A 112 --LEENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL-QEN 187 (388)
T ss_dssp --CCEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE-EES
T ss_pred --CcceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee-cCC
Confidence 4444445555554544443 66 777776432 3467999999988654443 456
Q ss_pred CCeEEEEEcC-CCCcEEEEEecC------CcEEEEecCCCccceeeeccCC--CCeEEEEEcCCCCEEEEEec-CC----
Q psy6213 141 ESVRDVEFNP-HSPYAFASVSEN------GTIQQWDVRRPEKCFYQFTAHS--GPIFACDWHPEHAWLATASR-DK---- 206 (330)
Q Consensus 141 ~~v~~~~~~~-~~~~~~~~~~~d------g~i~i~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~-dg---- 206 (330)
..+..++|+| +++. ++....+ ..|.++|... .. ...+..+. ..+..+.|+|||+.|+..+. ++
T Consensus 188 ~~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (388)
T 3pe7_A 188 QWLGHPIYRPYDDST-VAFCHEGPHDLVDARMWLINEDG-TN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDR 264 (388)
T ss_dssp SCEEEEEEETTEEEE-EEEEECSCTTTSSCSEEEEETTS-CC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCE
T ss_pred ccccccEECCCCCCE-EEEEEecCCCCCcceEEEEeCCC-Cc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcc
Confidence 6789999999 9985 5544432 3678888764 22 33343343 35778999999997765443 22
Q ss_pred cEEEEeCCCCccccceeccc-----cceEEEEEcCCCCeEEEEeec------ccCCeEEEEEccCCCccceEeecCCC--
Q psy6213 207 TIKVWDLSIKPSLEYSINTI-----ASVSRIKWRPQRKFHLASCSL------VVDSSVNVWDIRRPYIPLASFTEHKD-- 273 (330)
Q Consensus 207 ~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~------~~~~~i~i~d~~~~~~~~~~~~~~~~-- 273 (330)
.|++||+.+++......... .......|+|||+.++.+... ..+..|++||+.+++ ...+..+..
T Consensus 265 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~ 342 (388)
T 3pe7_A 265 FIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT--QHRVARHDTSW 342 (388)
T ss_dssp EEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE--EEEEEECCCCC
T ss_pred eEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc--eEEeccccCcc
Confidence 39999998875322111110 001123799999986655320 147799999998875 345555555
Q ss_pred ---------CeEEEEEecCCCEEEEee-cCCeEeeee
Q psy6213 274 ---------VVSGLAWRGDPQLFIASS-RVSIIPRAK 300 (330)
Q Consensus 274 ---------~v~~~~~~~~~~~l~s~~-~dg~i~iw~ 300 (330)
.+.+++|+|||+.|+.++ .+|...+|.
T Consensus 343 ~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 343 KVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred cccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 578899999999888766 467777774
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-22 Score=166.12 Aligned_cols=238 Identities=10% Similarity=0.065 Sum_probs=170.4
Q ss_pred EEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEE-EEEcCCCcEEEEECCCCC
Q psy6213 9 KHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHI-ATGATNGAVVVWNLGQIS 85 (330)
Q Consensus 9 ~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~ 85 (330)
.+++++++++ ++++ ++.|.+||..+++....+..+.. ..+..++|+| +++.+ +++..++.|.+||+.+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t-- 74 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK------FGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDT-- 74 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC------CSSCEEEECT-TSSEEEEEETTTTEEEEEETTT--
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC------CCCceeEECC-CCCEEEEEeCCCCcEEEEeCCC--
Confidence 4577888888 4445 99999999999887766544321 1247899999 77755 5566789999999987
Q ss_pred CCceeEEeccc------ccceeEEEEEecCCCEEEEEecC------------CcEEEEEeecCce---eeeeecCCCCeE
Q psy6213 86 RSKQERVFNDH------KRTVNKVSFHYVESNWLISGSQD------------GTMRLFDIRCQES---TKIFHSNTESVR 144 (330)
Q Consensus 86 ~~~~~~~~~~~------~~~i~~i~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~---~~~~~~~~~~v~ 144 (330)
.+....+... ...+..++|+| +++++++++.+ +.|.+||+.+++. +..+. +...+.
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~ 151 (349)
T 1jmx_B 75 -CKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVY 151 (349)
T ss_dssp -TEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCC
T ss_pred -CcEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccc
Confidence 5555544422 23478999998 88888888865 8999999988543 33343 344688
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccC-----------------------------------------
Q psy6213 145 DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH----------------------------------------- 183 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~----------------------------------------- 183 (330)
+++|+|+++ +++ ++ +.|++||+.+. +....+..+
T Consensus 152 ~~~~s~dg~-l~~-~~--~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 226 (349)
T 1jmx_B 152 LMRAADDGS-LYV-AG--PDIYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 226 (349)
T ss_dssp CEEECTTSC-EEE-ES--SSEEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred ceeECCCCc-EEE-cc--CcEEEEeCCCC-ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence 999999998 555 33 44999999873 333333211
Q ss_pred ---------------------------CCCeEEEEEcC-CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEc
Q psy6213 184 ---------------------------SGPIFACDWHP-EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWR 235 (330)
Q Consensus 184 ---------------------------~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 235 (330)
...+..++|+| ++++++++ ++.|.+||+.+++.... ......+..++|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~s 303 (349)
T 1jmx_B 227 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA-ANLDHTYYCVAFD 303 (349)
T ss_dssp CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE-EECSSCCCEEEEC
T ss_pred cccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE-EcCCCCccceEEC
Confidence 11345677889 99998888 78999999998744333 3334567899999
Q ss_pred CCCCeEEEEeecccCCeEEEEEccCCCccceEeec
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE 270 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 270 (330)
|+++++++++ .++.|++||+.+.+. +..+..
T Consensus 304 ~dg~~l~~~~---~~~~v~v~d~~~~~~-~~~~~~ 334 (349)
T 1jmx_B 304 KKGDKLYLGG---TFNDLAVFNPDTLEK-VKNIKL 334 (349)
T ss_dssp SSSSCEEEES---BSSEEEEEETTTTEE-EEEEEC
T ss_pred CCCCEEEEec---CCCeEEEEeccccce-eeeeec
Confidence 9999877754 489999999988765 555443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-22 Score=164.04 Aligned_cols=231 Identities=6% Similarity=-0.016 Sum_probs=167.6
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccc-cceeEEEEEecCCCEE-EEEecCCcEEEEEeecCce
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHK-RTVNKVSFHYVESNWL-ISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~ 132 (330)
+.+++++ ++.++++++.++.|.+||..+ .+....+..+. ..+..++|+| +++++ +++..++.|.+||+.+++.
T Consensus 3 ~g~~~~~-~~~~~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 3 TGPALKA-GHEYMIVTNYPNNLHVVDVAS---DTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKN 77 (349)
T ss_dssp -CCCCCT-TCEEEEEEETTTEEEEEETTT---TEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ccccccC-CCEEEEEeCCCCeEEEEECCC---CcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcE
Confidence 4567777 889999999999999999987 56666655432 2578899998 66655 5556789999999999888
Q ss_pred eeeeecCC------CCeEEEEEcCCCCcEEEEEecC------------CcEEEEecCCCcc--ceeeeccCCCCeEEEEE
Q psy6213 133 TKIFHSNT------ESVRDVEFNPHSPYAFASVSEN------------GTIQQWDVRRPEK--CFYQFTAHSGPIFACDW 192 (330)
Q Consensus 133 ~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~d------------g~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~ 192 (330)
...+.... ..+..++|+|++++ +++++.+ +.|.+||+.++.. .+..+. +...+.+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPDGKE-VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRA 155 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTTSSE-EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEE
T ss_pred EEEEEcccccccccccccceEECCCCCE-EEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeE
Confidence 77766432 23788999999995 5555544 8999999986321 122233 3446889999
Q ss_pred cCCCCEEEEEecCCcEEEEeCCCCccccceecc-----------------------------------------------
Q psy6213 193 HPEHAWLATASRDKTIKVWDLSIKPSLEYSINT----------------------------------------------- 225 (330)
Q Consensus 193 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------------------------------- 225 (330)
+|+|+ +++++. .|.+||..+++........
T Consensus 156 s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 156 ADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp CTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred CCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 99999 555543 4999999877432211100
Q ss_pred ---------------------ccceEEEEEcC-CCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecC
Q psy6213 226 ---------------------IASVSRIKWRP-QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGD 283 (330)
Q Consensus 226 ---------------------~~~v~~~~~~~-~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 283 (330)
...+..++|+| ++++++++ ++.|.+||+.+++. ...+.. ...+.+++|+|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~d 305 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKL-IKAANL-DHTYYCVAFDKK 305 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEE-EEEEEC-SSCCCEEEECSS
T ss_pred eeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeE-EEEEcC-CCCccceEECCC
Confidence 01345677889 99975554 57999999998764 444443 345789999999
Q ss_pred CCEEEEeecCCeEeeeecc
Q psy6213 284 PQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 284 ~~~l~s~~~dg~i~iw~~~ 302 (330)
+++|++++.++.|.+|+..
T Consensus 306 g~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 306 GDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp SSCEEEESBSSEEEEEETT
T ss_pred CCEEEEecCCCeEEEEecc
Confidence 9999999999999999864
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-21 Score=162.58 Aligned_cols=266 Identities=8% Similarity=0.019 Sum_probs=175.0
Q ss_pred CeEEEEEcC--CcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC-CCCCCceeEEecc-cccc
Q psy6213 24 NVFKIFLIK--DTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG-QISRSKQERVFND-HKRT 99 (330)
Q Consensus 24 ~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~-~~~~ 99 (330)
+.|.+|+++ ++++.......... ...+..++|+| ++++|++++.+ .|.+|++. + ++....... ..+.
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~----~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~---g~~~~~~~~~~~g~ 84 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQ----DEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSP---TEIVHEASHPIGGH 84 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCT----TCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEET---TEEEEEEEEECCSS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCC----CCCCcEEEECC-CCCEEEEEccc-eEEEEEECCC---CCEEEeeEeecCCC
Confidence 578887764 45443221111010 11247899999 99999988887 89999986 4 333322211 1123
Q ss_pred eeEEEEEecCCCE--EEEEe-------------cCCcEEEEEee-cCceeeeee----cCCCCeEEEEEcCCCCcEEEEE
Q psy6213 100 VNKVSFHYVESNW--LISGS-------------QDGTMRLFDIR-CQESTKIFH----SNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 100 i~~i~~~~~~~~~--l~~~~-------------~d~~i~i~d~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
...++|+| ++++ ++++. .++.+.+|++. +++....+. .+...+.+++|+|+|++++++.
T Consensus 85 ~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 85 PRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp GGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 56688998 7774 44553 68999999997 455443333 2456789999999999644443
Q ss_pred ecCCcEEEEecC-CCcc-ceeeec--cCCCCeEEEEEcCCCCEEEEEec-CCcEEEEeCC--CCcccc-----ceecc--
Q psy6213 160 SENGTIQQWDVR-RPEK-CFYQFT--AHSGPIFACDWHPEHAWLATASR-DKTIKVWDLS--IKPSLE-----YSINT-- 225 (330)
Q Consensus 160 ~~dg~i~i~d~~-~~~~-~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~~-----~~~~~-- 225 (330)
..++.|++||+. ++.. .+..+. .+...+..++|+|+|+++++++. ++.+.+|++. +++... .....
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 243 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence 346899999998 4321 122232 23567899999999999888775 6899999875 332210 11111
Q ss_pred ---cc------ceEEEE-EcCCCCeEEEEeecccCC-----eEEEEEcc-CCCccce---EeecCCCCeEEEEEec---C
Q psy6213 226 ---IA------SVSRIK-WRPQRKFHLASCSLVVDS-----SVNVWDIR-RPYIPLA---SFTEHKDVVSGLAWRG---D 283 (330)
Q Consensus 226 ---~~------~v~~~~-~~~~~~~l~~~~~~~~~~-----~i~i~d~~-~~~~~~~---~~~~~~~~v~~~~~~~---~ 283 (330)
.. .+..++ |+|||++++++.. .++ .|.+|++. +++. .. ....+...+..++|+| |
T Consensus 244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~--~~~~~~~~~i~v~~~~~~g~~-~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 244 PDRDPETGKGLYRADVCALTFSGKYMFASSR--ANKFELQGYIAGFKLRDCGSI-EKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEE--ESSTTSCCEEEEEEECTTSCE-EEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcccccccccccccEEEECCCCCEEEEECC--CCCCCCCCeEEEEEECCCCCE-EEeeeeeecCCCCcccceecCCCcC
Confidence 11 588999 9999998766654 233 89999996 4442 22 1333455677899999 8
Q ss_pred CCEEEEeecC-CeEeeeecc
Q psy6213 284 PQLFIASSRV-SIIPRAKNI 302 (330)
Q Consensus 284 ~~~l~s~~~d-g~i~iw~~~ 302 (330)
|++|++++.+ +.|.+|+..
T Consensus 321 g~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEE
T ss_pred CCEEEEEEcCCCeEEEEEEc
Confidence 9999998875 899999764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=182.45 Aligned_cols=278 Identities=9% Similarity=0.035 Sum_probs=186.4
Q ss_pred cceEEEEeeCCCeeecC-C----------CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCC
Q psy6213 6 PVHKHGLKADNGLAQPS-R----------NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG 74 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g-d----------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 74 (330)
.+.+++|||||++++.+ + +.|++||+++++......+. ..+..++||| +++.|+.+. ++
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~--------~~~~~~~~SP-DG~~la~~~-~~ 130 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP--------RPIQYLCWSP-VGSKLAYVY-QN 130 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC--------SSBCCEEECS-STTCEEEEE-TT
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC--------cccccceECC-CCCEEEEEE-CC
Confidence 38899999999995554 3 89999999988762111111 2358899999 999999886 78
Q ss_pred cEEEEECCCCCCCceeEEe-cccccce-----------------eEEEEEecCCCEEEEEecCC----------------
Q psy6213 75 AVVVWNLGQISRSKQERVF-NDHKRTV-----------------NKVSFHYVESNWLISGSQDG---------------- 120 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~-~~~~~~i-----------------~~i~~~~~~~~~l~~~~~d~---------------- 120 (330)
.|++|++.+ ++..... .++...+ .+++|+| +++.|++++.|.
T Consensus 131 ~i~~~~~~~---g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~ 206 (719)
T 1z68_A 131 NIYLKQRPG---DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQY 206 (719)
T ss_dssp EEEEESSTT---SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSS
T ss_pred eEEEEeCCC---CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCC
Confidence 999999977 3322221 2222212 5899999 899999887652
Q ss_pred ------------------cEEEEEeecCcee--------eeeecCCCCeEEEEEcCCCCcEEEEEecCC----cEEEEe-
Q psy6213 121 ------------------TMRLFDIRCQEST--------KIFHSNTESVRDVEFNPHSPYAFASVSENG----TIQQWD- 169 (330)
Q Consensus 121 ------------------~i~i~d~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg----~i~i~d- 169 (330)
.|++||+.+++.. ..+..+...+..++|+|+++ ++++....+ .|.+||
T Consensus 207 ~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~ 285 (719)
T 1z68_A 207 PRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDF 285 (719)
T ss_dssp CEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEE
T ss_pred ccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcc
Confidence 7889999877643 12334677899999999976 566644332 488899
Q ss_pred ---cCCCccceeee----ccCCCCeE-----EEEEcCCCCEEEE--EecCC--cEEEEeCCCCccccceeccccceEEEE
Q psy6213 170 ---VRRPEKCFYQF----TAHSGPIF-----ACDWHPEHAWLAT--ASRDK--TIKVWDLSIKPSLEYSINTIASVSRIK 233 (330)
Q Consensus 170 ---~~~~~~~~~~~----~~~~~~i~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~ 233 (330)
+.+ ++....+ ..|...+. .+.|+|+|+.++. ...+| .|.+||+.+++ ..........+..+.
T Consensus 286 ~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~ 363 (719)
T 1z68_A 286 REDWQT-WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIF 363 (719)
T ss_dssp CSSSSS-EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEE
T ss_pred cCCCCC-CceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEE
Confidence 765 4444444 35666676 8899999996554 44555 47777877664 333333445577777
Q ss_pred EcCCCCeEEEEeec--ccCCeEEEEEccC--CCccceEee----cCCCCeEEEEEecCCCEEEEe-ecC--CeEeeeec
Q psy6213 234 WRPQRKFHLASCSL--VVDSSVNVWDIRR--PYIPLASFT----EHKDVVSGLAWRGDPQLFIAS-SRV--SIIPRAKN 301 (330)
Q Consensus 234 ~~~~~~~l~~~~~~--~~~~~i~i~d~~~--~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~-~~d--g~i~iw~~ 301 (330)
++ +++.+++++.. ..++..++|.+.. +......+. +|...+..+.|+||+++++.. +.+ ..+.+|+.
T Consensus 364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 364 RV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp EE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred EE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 77 88887777761 0147888888764 321122332 255678899999998877753 333 35667754
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=177.77 Aligned_cols=284 Identities=10% Similarity=0.005 Sum_probs=186.5
Q ss_pred cccceEEEEeeCCCeeecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC---------C
Q psy6213 4 LSPVHKHGLKADNGLAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN---------G 74 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g 74 (330)
.....+++|+|||++++++|+.|++||+.+++....+..+..... ......++||| ++++|+.++.+ +
T Consensus 16 ~~~~~~~~w~~dg~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEF--GHSINDYSISP-DGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCCEEECSSSEEEEEETTEEEEEETTTCCEEEEECTTTTTTC--CSCCCEEEECT-TSSEEEEEEEEEECSSSCEEE
T ss_pred cccccccEECCCCcEEEEcCCcEEEEECCCCceEEEEechhhhhh--cccccceEECC-CCCEEEEEECCeeeEEEccce
Confidence 445778999999998766699999999999887655544432211 11124589999 99999998875 5
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee-cCCCCe----------
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH-SNTESV---------- 143 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v---------- 143 (330)
.+.+||+.+ ++. ..+..+...+...+|+| +++.|+.+. ++.|++||+.+++..+... ++...+
T Consensus 93 ~~~~~d~~~---~~~-~~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ 166 (740)
T 4a5s_A 93 SYDIYDLNK---RQL-ITEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE 166 (740)
T ss_dssp EEEEEETTT---TEE-CCSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHH
T ss_pred EEEEEECCC---CcE-EEcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCccccccc
Confidence 677999987 333 34566778899999999 888888875 6899999998876544222 222222
Q ss_pred -------EEEEEcCCCCcEEEEEe-cCC-----------------------------------cEEEEecCC---Ccc-c
Q psy6213 144 -------RDVEFNPHSPYAFASVS-ENG-----------------------------------TIQQWDVRR---PEK-C 176 (330)
Q Consensus 144 -------~~~~~~~~~~~~~~~~~-~dg-----------------------------------~i~i~d~~~---~~~-~ 176 (330)
..+.|+|||++ |+.++ +++ .|++||+.+ +.. .
T Consensus 167 ee~~~~~~~~~wSpDg~~-la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHTSSSSBCEEECTTSSE-EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred chhcCCCcceEECCCCCE-EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 35899999996 55543 222 477888876 421 1
Q ss_pred eeeec------cCCCCeEEEEEcCCCCEEEEEecC----CcEEEEeCCCCc----c--ccce--eccccce-----EEEE
Q psy6213 177 FYQFT------AHSGPIFACDWHPEHAWLATASRD----KTIKVWDLSIKP----S--LEYS--INTIASV-----SRIK 233 (330)
Q Consensus 177 ~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~----~--~~~~--~~~~~~v-----~~~~ 233 (330)
...+. +|...+..++|+|||+.++..... ..|.+||+.+++ + .... ..+...+ ....
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH 325 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence 22232 267779999999999977665432 369999998875 1 1111 2233333 3688
Q ss_pred EcCCCCeEE-EEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC-----CeEeeee
Q psy6213 234 WRPQRKFHL-ASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV-----SIIPRAK 300 (330)
Q Consensus 234 ~~~~~~~l~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~iw~ 300 (330)
|+|||+.++ ..........|++||+.++. ...+......+..+.. +|++.|+..+.. +...+|.
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~--~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~ 395 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKD--CTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYK 395 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSS--CEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEE
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCCc--eEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEE
Confidence 999999866 44331123578888887665 3344444555666542 446655554433 3455554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-21 Score=159.16 Aligned_cols=245 Identities=11% Similarity=0.104 Sum_probs=164.2
Q ss_pred ccceEEEEeeCCCeeecC-CCeEEEEEcC-CcceeeeeceeeccccccccceeeeeecccCCcE--EEEEc---------
Q psy6213 5 SPVHKHGLKADNGLAQPS-RNVFKIFLIK-DTEFVETHNLRVGKNINLNFSCNDVAWSCIEENH--IATGA--------- 71 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g-d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~~~~--------- 71 (330)
..+..++|+|||+++.++ .+.|.+|+++ +++........... .+..++|+| ++++ ++++.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g------~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGG------HPRANDADT-NTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCS------SGGGGCTTS-CCEEEEEEECSSTTCCEEEE
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCC------CCccEEECC-CCCEEEEEEecCCcceeccc
Confidence 467899999999985444 3399999997 66654332211111 135689999 8884 45553
Q ss_pred ----CCCcEEEEECCCCCCCceeEEec----ccccceeEEEEEecCCCEEEEEec-CCcEEEEEee-cCcee--eeee--
Q psy6213 72 ----TNGAVVVWNLGQISRSKQERVFN----DHKRTVNKVSFHYVESNWLISGSQ-DGTMRLFDIR-CQEST--KIFH-- 137 (330)
Q Consensus 72 ----~dg~i~iw~~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~l~~~~~-d~~i~i~d~~-~~~~~--~~~~-- 137 (330)
.+|.+.+|++... ++....+. .+...+.+++|+| ++++++++.. ++.|++||+. +++.. ..+.
T Consensus 113 ~~~~~~g~v~v~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 189 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSET--GKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAP 189 (365)
T ss_dssp EESSSCCEEEEEEECTT--CCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred eeecCCceEEEEccCCC--CcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC
Confidence 6899999999742 22222222 2456789999999 8887777653 6799999998 66643 2333
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCC-ccce------eeecc----CCC------CeEEEE-EcCCCCEE
Q psy6213 138 SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP-EKCF------YQFTA----HSG------PIFACD-WHPEHAWL 199 (330)
Q Consensus 138 ~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~-~~~~------~~~~~----~~~------~i~~~~-~~~~~~~l 199 (330)
.+...+..++|+|++++++++...++.|.+|++... ++.. ..+.. |.. .+..++ |+|+|++|
T Consensus 190 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 235678999999999964444445789999987531 2221 11211 122 478999 99999988
Q ss_pred EEEecCC------cEEEEeCC-CCccccc--ee-ccccceEEEEEcC---CCCeEEEEeecccCCeEEEEEccCC
Q psy6213 200 ATASRDK------TIKVWDLS-IKPSLEY--SI-NTIASVSRIKWRP---QRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 200 ~~~~~dg------~i~i~d~~-~~~~~~~--~~-~~~~~v~~~~~~~---~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
+++..+. .|.+|++. +++.... .. .....+..++|+| +|++++++.. .++.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~--~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD--QEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS--SSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc--CCCeEEEEEEchh
Confidence 8776433 89999996 4432211 12 2334567789999 8998766665 4699999999765
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-22 Score=167.95 Aligned_cols=274 Identities=9% Similarity=0.041 Sum_probs=176.5
Q ss_pred cceEEEEeeCCCeeecC-----CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 6 PVHKHGLKADNGLAQPS-----RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.+..++|+|||++++.. +..|.+|++.+++........ .. ....+.|+| +++.|+.++.++.|.+|+
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~-~~------~~~~~~~sp-dg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK-GD------NTFGGFIST-DERAFFYVKNELNLMKVD 108 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS-CB------CTTTCEECT-TSSEEEEEETTTEEEEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC-CC------ccccceECC-CCCEEEEEEcCCcEEEEE
Confidence 37888999999994333 347888899887654332211 11 113478999 999999999888999999
Q ss_pred CCCCCCCceeEEecccccceeE-------------------EEEEecCCCEEEEE-----ecCCcEEEEEeecCceeeee
Q psy6213 81 LGQISRSKQERVFNDHKRTVNK-------------------VSFHYVESNWLISG-----SQDGTMRLFDIRCQESTKIF 136 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~-------------------i~~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~~ 136 (330)
+.+ .+.......+...... ..|+| +++.++.+ ..+..|++||+.+++.....
T Consensus 109 ~~~---~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~ 184 (396)
T 3c5m_A 109 LET---LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH 184 (396)
T ss_dssp TTT---CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred CCC---CCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence 987 3433333323321111 23455 45544433 34568999999887765544
Q ss_pred ecCCCCeEEEEEcC-CCCcEEEEEecC------CcEEEEecCCCccceeeeccC--CCCeEEEEEcCCCCEEEEEecC--
Q psy6213 137 HSNTESVRDVEFNP-HSPYAFASVSEN------GTIQQWDVRRPEKCFYQFTAH--SGPIFACDWHPEHAWLATASRD-- 205 (330)
Q Consensus 137 ~~~~~~v~~~~~~~-~~~~~~~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d-- 205 (330)
.+...+..+.|+| ++.. ++..+.+ ..|.+||+.. .. ...+..+ ...+..+.|+|+|++|+.++.+
T Consensus 185 -~~~~~~~~~~~sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 185 -QDTAWLGHPIYRPFDDST-VGFCHEGPHDLVDARMWLVNEDG-SN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp -EESSCEEEEEEETTEEEE-EEEEECSCSSSCSCCCEEEETTS-CC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred -cCCcccccceECCCCCCE-EEEEecCCCCCCCceEEEEECCC-Cc-eeEeeccCCCccccceEECCCCCEEEEEecCCC
Confidence 3566789999999 7774 4444333 3688888865 32 2223222 2357889999999987777644
Q ss_pred ---CcEEEEeCCCCccccceeccccceEEEEEcC-CCCeEEEEee-------------cccCCeEEEEEccCCCccceEe
Q psy6213 206 ---KTIKVWDLSIKPSLEYSINTIASVSRIKWRP-QRKFHLASCS-------------LVVDSSVNVWDIRRPYIPLASF 268 (330)
Q Consensus 206 ---g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~-------------~~~~~~i~i~d~~~~~~~~~~~ 268 (330)
+.|++||+.+++..... ... ... +.|+| +|+.++.+.+ ...+..|++||+.++.. ..+
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~-~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l 335 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVM-VMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKL 335 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEE-ECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEE
T ss_pred CccceEEEEECCCCCeEEee-eCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEc
Confidence 44999999877432221 111 233 89999 9997555331 00247899999987753 344
Q ss_pred ecCCC-----------CeEEEEEecCCCEEEEeec-CCeEeeee
Q psy6213 269 TEHKD-----------VVSGLAWRGDPQLFIASSR-VSIIPRAK 300 (330)
Q Consensus 269 ~~~~~-----------~v~~~~~~~~~~~l~s~~~-dg~i~iw~ 300 (330)
..+.. .+..++|+|||+.|+.++. ++...+|.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 336 CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred cCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 44443 2567899999998887765 56666664
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-20 Score=169.02 Aligned_cols=237 Identities=14% Similarity=0.131 Sum_probs=164.7
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccc-----eeEEEEEecCCCEEEEEecC---------
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRT-----VNKVSFHYVESNWLISGSQD--------- 119 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-----i~~i~~~~~~~~~l~~~~~d--------- 119 (330)
...++|+| ++.+++++ ||.|++||+.+ ++....+..|... ...+.|+| ++++|+.++.+
T Consensus 19 ~~~~~w~~-dg~~~~~~--~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 19 LYSLRWIS-DHEYLYKQ--ENNILVFNAEY---GNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCEEECS-SSEEEEEE--TTEEEEEETTT---CCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEE
T ss_pred ccccEECC-CCcEEEEc--CCcEEEEECCC---CceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccc
Confidence 36899999 88888886 89999999988 5555566666532 24478999 89999988876
Q ss_pred CcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCe------------
Q psy6213 120 GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPI------------ 187 (330)
Q Consensus 120 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i------------ 187 (330)
+.+.+||+.+++... +..+...+...+|||+|+. |+.+ .++.|++||+.++.....+..++...+
T Consensus 92 ~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~-la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHK-LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTC-EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred eEEEEEECCCCcEEE-cccCCCcceeeEECCCCCE-EEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 567799999887554 5556778999999999996 5655 468999999987433222222332222
Q ss_pred -----EEEEEcCCCCEEEEEecCC------------------------------------cEEEEeCCC---Cc---ccc
Q psy6213 188 -----FACDWHPEHAWLATASRDK------------------------------------TIKVWDLSI---KP---SLE 220 (330)
Q Consensus 188 -----~~~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~---~~~ 220 (330)
..+.|||||+.|+..+.|. .|++||+.+ ++ ...
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~ 248 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ 248 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence 3589999999999876332 478899887 62 211
Q ss_pred cee-----ccccceEEEEEcCCCCeEEEEeec-ccCCeEEEEEccCCC----cc-ceEe--ecCCCCeE-----EEEEec
Q psy6213 221 YSI-----NTIASVSRIKWRPQRKFHLASCSL-VVDSSVNVWDIRRPY----IP-LASF--TEHKDVVS-----GLAWRG 282 (330)
Q Consensus 221 ~~~-----~~~~~v~~~~~~~~~~~l~~~~~~-~~~~~i~i~d~~~~~----~~-~~~~--~~~~~~v~-----~~~~~~ 282 (330)
... .+...+..++|+|||+.++..... ..+..|.+||+.+++ +. ...+ ..|...|. ..+|+|
T Consensus 249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 111 256679999999999965544431 023479999999876 11 1222 45555554 789999
Q ss_pred CCCEEE-Eee-cCC--eEeeee
Q psy6213 283 DPQLFI-ASS-RVS--IIPRAK 300 (330)
Q Consensus 283 ~~~~l~-s~~-~dg--~i~iw~ 300 (330)
||+.|+ ..+ .+| .|++|+
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEEEcCCCceEEEEEE
Confidence 999877 555 445 455554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-20 Score=164.25 Aligned_cols=288 Identities=7% Similarity=-0.028 Sum_probs=182.9
Q ss_pred CCcccceEEEEeeCCCe-eec--C-CCeEEEEEcCCcceeeeeceeecccc--ccccceeeeeec--ccCCcE-EEEEcC
Q psy6213 2 AYLSPVHKHGLKADNGL-AQP--S-RNVFKIFLIKDTEFVETHNLRVGKNI--NLNFSCNDVAWS--CIEENH-IATGAT 72 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~--g-d~~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~--~~~~~~-l~~~~~ 72 (330)
.|...+..++|++++.+ +.. + ++...||....+.....+..+...+. ...+.-....|+ | +++. |+.++.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la~~~~ 99 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLVFTHF 99 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEEEEBT
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeec-CCCeEEEEEEC
Confidence 37788999999988766 444 4 78999999654443333332221111 001111145565 8 7877 666543
Q ss_pred -CCcEEEEECCCCCCCceeEEecc-----cccceeEEEEEecCCCEEEEEecC----------CcEEEEEeec------C
Q psy6213 73 -NGAVVVWNLGQISRSKQERVFND-----HKRTVNKVSFHYVESNWLISGSQD----------GTMRLFDIRC------Q 130 (330)
Q Consensus 73 -dg~i~iw~~~~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~~l~~~~~d----------~~i~i~d~~~------~ 130 (330)
+..|.++++.... ......+.. |...+..++|+| +++.|++++.+ ..|++||+.+ +
T Consensus 100 ~~~~l~~~~~~~~g-~~~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 100 GDQRLYAFEPDAPG-GAVPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp TTCCEEEECTTSTT-CCCCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred CCCeEEEEcCCCCC-CCCCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 5566666654000 022333444 567889999999 88989888876 5899999987 4
Q ss_pred ceeeeee-cCCCCeEEEEEcCCCCcEEEEEecC--------CcEEEEecCCCc---cceeeeccCCCCeEEEEEcCCCCE
Q psy6213 131 ESTKIFH-SNTESVRDVEFNPHSPYAFASVSEN--------GTIQQWDVRRPE---KCFYQFTAHSGPIFACDWHPEHAW 198 (330)
Q Consensus 131 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~ 198 (330)
+. ..+. .+...+..++|+|+|++ |+.++.+ ..|++||+...+ ........+...+..+.|+|||++
T Consensus 178 ~~-~~l~~~~~~~~~~~~~SpDG~~-la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 178 AV-RELSDDAHRFVTGPRLSPDGRQ-AVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GS-EESSCSCSSEECCCEECTTSSE-EEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred ce-eEEEecCCCcccCceECCCCCE-EEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 44 3444 45567888999999995 5555533 379999998323 333344445788999999999998
Q ss_pred EEEEecCC--cEEEEeCCCCccccceeccccc--------eEEEEEcCCCCeEEEEeecccCCeEEEE--EccCCCccce
Q psy6213 199 LATASRDK--TIKVWDLSIKPSLEYSINTIAS--------VSRIKWRPQRKFHLASCSLVVDSSVNVW--DIRRPYIPLA 266 (330)
Q Consensus 199 l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~~~~~~~i~i~--d~~~~~~~~~ 266 (330)
++++..++ .|.+||+.+++.......+... +..++|+|+++. ++++. . +.+++| |+.++. +.
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~-~~~~~--~-~~~~l~~~d~~~~~--~~ 329 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLI-AVVHG--K-GAAVLGILDPESGE--LV 329 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCE-EEEEB--S-SSCEEEEEETTTTE--EE
T ss_pred EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEE-EEEEE--c-CccEEEEEECCCCc--EE
Confidence 88888888 5666776555322211111111 467889999885 66666 5 888888 544443 56
Q ss_pred EeecCCCCeEEE-EEecCCCEEEEeecCCeEeeee
Q psy6213 267 SFTEHKDVVSGL-AWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 267 ~~~~~~~~v~~~-~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
.+..|...+..+ +++++.-.+++++.+....+|.
T Consensus 330 ~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 330 DAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVE 364 (662)
T ss_dssp ECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred EecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence 677777778777 5544444445556665555553
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-18 Score=139.46 Aligned_cols=234 Identities=9% Similarity=0.120 Sum_probs=168.5
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEec------ccccceeEEEEEecCCCEEEEEec-CCcEEEEE
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFN------DHKRTVNKVSFHYVESNWLISGSQ-DGTMRLFD 126 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~i~~i~~~~~~~~~l~~~~~-d~~i~i~d 126 (330)
+.+++++| +++++++...++.|.+||... +....+. .+...+..+++.+.+++++++... ++.|++||
T Consensus 32 p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 32 PSGVAVNA-QNDIIVADTNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp EEEEEECT-TCCEEEEEGGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CceEEECC-CCCEEEEECCCCEEEEECCCC----cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 58899999 888888888899999999764 3333332 234568899996336666666543 78999999
Q ss_pred eecCceeeeeec-CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec--cCCCCeEEEEEcCCCCEEEEEe
Q psy6213 127 IRCQESTKIFHS-NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT--AHSGPIFACDWHPEHAWLATAS 203 (330)
Q Consensus 127 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~ 203 (330)
.+++.+..+.. +...+..++++|++. ++++...++.|++||... .....+. .+...+..++++|+|+++++..
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS--CEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCC--CEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 55666666643 345689999999997 677777789999999653 3344443 3445789999999999888888
Q ss_pred cCCcEEEEeCCCCccccceecc--ccceEEEEEcCCCCeEEEEeecccCC-eEEEEEccCCCccceEeecCC--CCeEEE
Q psy6213 204 RDKTIKVWDLSIKPSLEYSINT--IASVSRIKWRPQRKFHLASCSLVVDS-SVNVWDIRRPYIPLASFTEHK--DVVSGL 278 (330)
Q Consensus 204 ~dg~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~~--~~v~~~ 278 (330)
.++.|++||.... ........ ...+..++++|+|.. +++.. .++ .|.+||.. ++. +..+..+. ..+.++
T Consensus 183 ~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G~l-~v~~~--~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 183 RAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEI-LIADN--HNNFNLTIFTQD-GQL-ISALESKVKHAQCFDV 256 (286)
T ss_dssp GGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCE-EEEEC--SSSCEEEEECTT-SCE-EEEEEESSCCSCEEEE
T ss_pred CCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCCCE-EEEeC--CCCEEEEEECCC-CCE-EEEEcccCCCCcceeE
Confidence 8899999997543 32222222 257889999999985 55544 365 99999964 333 44554443 347899
Q ss_pred EEecCCCEEEEeecCCeEeeeeccc
Q psy6213 279 AWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 279 ~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
+++|+|+++++ +.|+.|++|+...
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EECCCCcEEEE-CCCCeEEEEEccc
Confidence 99999987776 6799999997543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-19 Score=145.46 Aligned_cols=255 Identities=11% Similarity=0.078 Sum_probs=170.6
Q ss_pred ccceEEEEeeCCCeeec---------C--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC
Q psy6213 5 SPVHKHGLKADNGLAQP---------S--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN 73 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~---------g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 73 (330)
..+...++ ||+.++. + ++.|.+|++++++.... ..+..++|+| +++.|+.++.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l------------~~~~~~~~Sp-Dg~~la~~~~~ 79 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI------------ENATMPRISP-DGKKIAFMRAN 79 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE------------ESCEEEEECT-TSSEEEEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc------------ccCCCeEECC-CCCEEEEEEec
Confidence 45677777 8887332 1 56799999988764322 1247899999 99988877654
Q ss_pred ---C--cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC---------------------------Cc
Q psy6213 74 ---G--AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD---------------------------GT 121 (330)
Q Consensus 74 ---g--~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---------------------------~~ 121 (330)
+ .|.+|++.+ ++...... +.. +..+.|+| +++.|+.++.+ ..
T Consensus 80 ~~~~~~~l~~~~~~~---g~~~~l~~-~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (347)
T 2gop_A 80 EEKKVSEIWVADLET---LSSKKILE-AKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTT 153 (347)
T ss_dssp TTTTEEEEEEEETTT---TEEEEEEE-ESE-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEE
T ss_pred cCCCcceEEEEECCC---CceEEEEc-CCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccce
Confidence 3 377778776 44433333 333 99999999 78878777632 57
Q ss_pred EEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC-------cEEEEecCCCccceeeeccCCCCeEEEEEcC
Q psy6213 122 MRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG-------TIQQWDVRRPEKCFYQFTAHSGPIFACDWHP 194 (330)
Q Consensus 122 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~ 194 (330)
|++||+.+++.+..+.. . .+..++|+|++ +++++..++ ...+|.+.+ ++. ..+..+ ..+..+ +|
T Consensus 154 l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~-~~~-~~l~~~-~~~~~~--sp 224 (347)
T 2gop_A 154 FWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWED-GKE-EKMFEK-VSFYAV--DS 224 (347)
T ss_dssp EEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEET-TEE-EEEEEE-ESEEEE--EE
T ss_pred EEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCC-Cce-EEeccC-cceeeE--CC
Confidence 99999988876455554 3 78899999999 566665442 334444443 333 333334 455544 99
Q ss_pred CCCEEEEEecC--------CcEEEEeCCCCccccceeccccceEE-EEEcCCCCeEEEEeecccCCeEEEEEccCCCccc
Q psy6213 195 EHAWLATASRD--------KTIKVWDLSIKPSLEYSINTIASVSR-IKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPL 265 (330)
Q Consensus 195 ~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~ 265 (330)
+|++|+.++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++ .++.+++| +.+++ .
T Consensus 225 dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~--~~~~~~l~-~~~g~--~ 294 (347)
T 2gop_A 225 DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLF--EEGSVNLY-IWDGE--I 294 (347)
T ss_dssp CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEE--ETTEEEEE-EESSS--E
T ss_pred CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEe--cCCcEEEE-EcCCc--e
Confidence 99988887754 3688888 44333223334567776 8999 87 455555 58999999 88443 3
Q ss_pred eEeecCCCCeEEEEEecCCCEEEEeecCCeE-eeeec
Q psy6213 266 ASFTEHKDVVSGLAWRGDPQLFIASSRVSII-PRAKN 301 (330)
Q Consensus 266 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i-~iw~~ 301 (330)
..+..+...|.+++|+| .++++++.++.. .+|..
T Consensus 295 ~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 295 KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 44445577899999999 677777777664 66653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-19 Score=146.22 Aligned_cols=242 Identities=12% Similarity=0.109 Sum_probs=174.6
Q ss_pred ccceEEEEeeCCCeeecC--C------------------------CeEEEEEcCCcceeeeeceeeccccccccceeeee
Q psy6213 5 SPVHKHGLKADNGLAQPS--R------------------------NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVA 58 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g--d------------------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 58 (330)
+.+.+++++|+|++++++ + +.|.+||.++++....... .....+..++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------~~~~~p~gia 97 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK------NLFYLPHGLS 97 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT------TTCSSEEEEE
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC------CccCCceEEE
Confidence 578999999999995555 5 3799999988887543321 1111248899
Q ss_pred ecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEe---------cccccceeEEEEEecCCCEEEEEe-cCCcEEEEEee
Q psy6213 59 WSCIEENHIATGATNGAVVVWNLGQISRSKQERVF---------NDHKRTVNKVSFHYVESNWLISGS-QDGTMRLFDIR 128 (330)
Q Consensus 59 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---------~~~~~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~~ 128 (330)
++| +++++++...++.|++|+.... ...+..+ ..+-.....++++|.++.++++.+ .++.|++|| .
T Consensus 98 ~d~-~g~l~v~d~~~~~v~~~~~~g~--~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~ 173 (329)
T 3fvz_A 98 IDT-DGNYWVTDVALHQVFKLDPHSK--EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-P 173 (329)
T ss_dssp ECT-TSCEEEEETTTTEEEEECTTCS--SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-T
T ss_pred ECC-CCCEEEEECCCCEEEEEeCCCC--eEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-C
Confidence 999 8888888888999999998641 1133333 233446889999985677777776 689999999 4
Q ss_pred cCceeeeeecCC----------CCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeee--ccCCCCeEEEEEcCCC
Q psy6213 129 CQESTKIFHSNT----------ESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQF--TAHSGPIFACDWHPEH 196 (330)
Q Consensus 129 ~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~ 196 (330)
+++.+..+.... .....++++|++..++++...++.|++||..+ ++.+..+ ..+...+..++++| +
T Consensus 174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~p-g 251 (329)
T 3fvz_A 174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT-KEFVREIKHASFGRNVFAISYIP-G 251 (329)
T ss_dssp TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEECCTTTTTCEEEEEEET-T
T ss_pred CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-CcEEEEEeccccCCCcceeeecC-C
Confidence 566666654222 23889999999555788888899999999985 4555555 34556788999999 4
Q ss_pred CEEEEE-------ecCCcEEEEeCCCCccccce---eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 197 AWLATA-------SRDKTIKVWDLSIKPSLEYS---INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 197 ~~l~~~-------~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
..+.+. ..+..+++||..+++..... ..+...+..++++|+|. ++++.. .++.|++|++...
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~-lyvad~--~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT-VYIGDA--HTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE-EEEEES--SSCCEEEEEEEEC
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC-EEEEEC--CCCEEEEEeCCcc
Confidence 333333 34458999999888554443 23456789999999995 566666 6999999998653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-19 Score=146.52 Aligned_cols=259 Identities=11% Similarity=0.076 Sum_probs=182.3
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC----------CCcEEEEECCCCCCCceeEE
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT----------NGAVVVWNLGQISRSKQERV 92 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~ 92 (330)
|+.|.+||..+++....+... ... .++|+| ++++++++.. ++.|.+||..+ .+....
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g--------~~p-~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t---~~~~~~ 96 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTA--------FNG-HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADK---LTFEKE 96 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECC--------EEE-EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTT---CCEEEE
T ss_pred cCeEEEEECCCCeEEEEecCC--------CCC-ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcC---CcEEEE
Confidence 679999999988876544322 112 789999 9999988863 56799999887 555555
Q ss_pred eccc------ccceeEEEEEecCCCEEEEEec--CCcEEEEEeecCceeee-eecCCCCeEEEEEcCCCCcEEEEEecCC
Q psy6213 93 FNDH------KRTVNKVSFHYVESNWLISGSQ--DGTMRLFDIRCQESTKI-FHSNTESVRDVEFNPHSPYAFASVSENG 163 (330)
Q Consensus 93 ~~~~------~~~i~~i~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~dg 163 (330)
+... ......++++| ++++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|+++..+++.+.||
T Consensus 97 i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg 173 (361)
T 2oiz_A 97 ISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDG 173 (361)
T ss_dssp EEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTS
T ss_pred EEcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCC
Confidence 4422 24567899998 8888888764 57999999999988777 5532 2233667888766788899999
Q ss_pred cEEEEecCCCccce------eeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccce-e---c----c----
Q psy6213 164 TIQQWDVRRPEKCF------YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYS-I---N----T---- 225 (330)
Q Consensus 164 ~i~i~d~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~----~---- 225 (330)
.+.+|+....++.. ..+.....++ .+.++|++..++..+.++.+.++|+......... . . .
T Consensus 174 ~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (361)
T 2oiz_A 174 GLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV 252 (361)
T ss_dssp SEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE
T ss_pred cEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc
Confidence 99999987534333 1222222222 3445677877888888999999998755321110 0 0 0
Q ss_pred ccceEEEEEcCCCCeEEEEee-cc-------cCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 226 IASVSRIKWRPQRKFHLASCS-LV-------VDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 226 ~~~v~~~~~~~~~~~l~~~~~-~~-------~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
......++|+|+++.++++.. .. ..+.|.+||+.+.+. +..+..+. +.+++|+|||++|++++. +.|.
T Consensus 253 p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~ 328 (361)
T 2oiz_A 253 PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVN 328 (361)
T ss_dssp ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTTTEEEEECS-SCEE
T ss_pred cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCCCEEEEeCC-CeEE
Confidence 111223789999888776643 00 135899999999876 77777766 999999999999998887 9999
Q ss_pred eeecc
Q psy6213 298 RAKNI 302 (330)
Q Consensus 298 iw~~~ 302 (330)
+|+..
T Consensus 329 v~D~~ 333 (361)
T 2oiz_A 329 VYDIS 333 (361)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-19 Score=150.94 Aligned_cols=263 Identities=9% Similarity=-0.013 Sum_probs=172.1
Q ss_pred EEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-CCc--EEEEECCCCCCCceeEEecccccceeEEEE
Q psy6213 29 FLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-NGA--VVVWNLGQISRSKQERVFNDHKRTVNKVSF 105 (330)
Q Consensus 29 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~ 105 (330)
++..++.....+..+..... ...+...+|+| +++.|+.++. +|. |.+||+.+ .+.......+...+....|
T Consensus 15 ~~~~~g~~~~~lt~~~~~~~--~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~---g~~~~lt~~~~~~~~~~~~ 88 (388)
T 3pe7_A 15 QDASTGAQVTRLTPPDVTCH--RNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNT---QVATQLTEGRGDNTFGGFL 88 (388)
T ss_dssp ECTTTCCEEEECSCTTSCEE--CCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTT---CEEEECCCSSCBCSSSCEE
T ss_pred ecCCCCcceEEecCCccccc--chhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCC---CceEEeeeCCCCCccceEE
Confidence 45566655554443322110 11123478999 9998888877 663 88888877 5555555566666667889
Q ss_pred EecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEE--EcCCCCcEEEEE----------------------ec
Q psy6213 106 HYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVE--FNPHSPYAFASV----------------------SE 161 (330)
Q Consensus 106 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~----------------------~~ 161 (330)
+| +++.|+.++.++.|++||+.+++....+..+...+.... ++|++.. ++.. ..
T Consensus 89 sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (388)
T 3pe7_A 89 SP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTK-LVGIEIRREDWVPLTDWKKFHEFYFTKP 166 (388)
T ss_dssp CT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSE-EEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred cC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCe-eccccccCcccccccccchhhhhhccCC
Confidence 99 899999999899999999999887776665655554444 4888884 4432 23
Q ss_pred CCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEecC------CcEEEEeCCCCccccceeccc--cceEEE
Q psy6213 162 NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRD------KTIKVWDLSIKPSLEYSINTI--ASVSRI 232 (330)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~v~~~ 232 (330)
+..|++||+.++ + ...+..+...+..+.|+| +|+.|+....+ ..|.++|........ ...+. ..+..+
T Consensus 167 ~~~l~~~d~~~g-~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~ 243 (388)
T 3pe7_A 167 CCRLMRVDLKTG-E-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHE 243 (388)
T ss_dssp CEEEEEEETTTC-C-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEE
T ss_pred cceEEEEECCCC-c-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccc
Confidence 467999999874 3 344445667789999999 99998887753 378888887653322 22222 357889
Q ss_pred EEcCCCCeEEEEeecccC--CeEEEEEccCCCcc-ceEeecCCC---CeEEEEEecCCCEEEEe---------ecCCeEe
Q psy6213 233 KWRPQRKFHLASCSLVVD--SSVNVWDIRRPYIP-LASFTEHKD---VVSGLAWRGDPQLFIAS---------SRVSIIP 297 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~--~~i~i~d~~~~~~~-~~~~~~~~~---~v~~~~~~~~~~~l~s~---------~~dg~i~ 297 (330)
+|+|||+.++........ ..|++||+.+++.. +.....+.. ....++|+|||+.|+.. ..+..|+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~ 323 (388)
T 3pe7_A 244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY 323 (388)
T ss_dssp EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence 999999986555541111 24999999988631 222222110 01223799999988864 4466899
Q ss_pred eeecc
Q psy6213 298 RAKNI 302 (330)
Q Consensus 298 iw~~~ 302 (330)
+|+..
T Consensus 324 ~~d~~ 328 (388)
T 3pe7_A 324 VFNMK 328 (388)
T ss_dssp EEETT
T ss_pred EEecc
Confidence 99754
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-18 Score=143.79 Aligned_cols=240 Identities=14% Similarity=0.120 Sum_probs=174.9
Q ss_pred ceeeeeecccCCcEEEEEcCC------------------------CcEEEEECCCCCCCceeEEec-ccccceeEEEEEe
Q psy6213 53 SCNDVAWSCIEENHIATGATN------------------------GAVVVWNLGQISRSKQERVFN-DHKRTVNKVSFHY 107 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~~~~-~~~~~i~~i~~~~ 107 (330)
.+.+++++| +++++++...+ +.|.+||..+ ++....+. .+-.....++++|
T Consensus 25 ~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 25 QVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN---AEILQSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT---CCEEEEECTTTCSSEEEEEECT
T ss_pred CceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC---CeEEeccCCCccCCceEEEECC
Confidence 368999999 89988888777 4799999876 45544443 3445788999998
Q ss_pred cCCCEEEEEecCCcEEEEEeecCc-eeeeee---------cCCCCeEEEEEcC-CCCcEEEEEe-cCCcEEEEecCCCcc
Q psy6213 108 VESNWLISGSQDGTMRLFDIRCQE-STKIFH---------SNTESVRDVEFNP-HSPYAFASVS-ENGTIQQWDVRRPEK 175 (330)
Q Consensus 108 ~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~~~~~~~-~dg~i~i~d~~~~~~ 175 (330)
+++++++...++.|+.||..... .+..+. .+......++++| ++. ++++.+ .++.|++||.. +.
T Consensus 101 -~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~~~--g~ 176 (329)
T 3fvz_A 101 -DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFSPS--GK 176 (329)
T ss_dssp -TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEECTT--SC
T ss_pred -CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEcCC--CC
Confidence 88888888889999999986442 444442 2334688999999 565 677775 68999999944 44
Q ss_pred ceeeecc----------CCCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCccccce--eccccceEEEEEcCCCCeEE
Q psy6213 176 CFYQFTA----------HSGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPSLEYS--INTIASVSRIKWRPQRKFHL 242 (330)
Q Consensus 176 ~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~ 242 (330)
.+..+.. +......++++|+ +.++++...++.|++||..+++..... ......+..++|+| +. ++
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~-~~ 254 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF-LF 254 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE-EE
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE-EE
Confidence 4444432 2234889999998 777788888899999999866443333 22456788999999 32 23
Q ss_pred EEeec-----ccCCeEEEEEccCCCccceEe---ecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 243 ASCSL-----VVDSSVNVWDIRRPYIPLASF---TEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 243 ~~~~~-----~~~~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
...+. ..+..|++||..+++. +..+ ..+...+.+++++|+|.++++...++.|++|+...
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEI-IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCE-EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeE-EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 22220 0355899999998875 5555 35667799999999998888888999999997653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-18 Score=143.09 Aligned_cols=268 Identities=10% Similarity=0.049 Sum_probs=179.0
Q ss_pred cccceEEEEeeCCCeeec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGLAQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
...|.+++|++++..++. . ++.++.|. ++....+..+. ..+.+++|+| ++++++++..++.|.+||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~ 73 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISKKG-------LQLEGLNFDR-QGQLFLLDVFEGNIFKINP 73 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEESSC-------CCEEEEEECT-TSCEEEEETTTCEEEEECT
T ss_pred ccccceeeecCCccceeEEeecccCcccc---cceeEEEeccC-------ccccCcEECC-CCCEEEEECCCCEEEEEeC
Confidence 356889999999887443 4 88888882 22222221111 1247899998 8888888888999999998
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC----CcEEEEEeecCceeeeee--cCCCCeEEEEEcCCCCcE
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD----GTMRLFDIRCQESTKIFH--SNTESVRDVEFNPHSPYA 155 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~ 155 (330)
.+ .+.......+...+.+++++| +++++++...+ +.|.+||.++++....+. .....+..++++|++. +
T Consensus 74 ~~---~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l 148 (333)
T 2dg1_A 74 ET---KEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-F 148 (333)
T ss_dssp TT---CCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-E
T ss_pred CC---CcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-E
Confidence 76 343333334567899999998 77877777666 689999988776543332 2345789999999997 5
Q ss_pred EEEEec------CCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEE-EEecCCcEEEEeCCC-Cccccc-----e
Q psy6213 156 FASVSE------NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLA-TASRDKTIKVWDLSI-KPSLEY-----S 222 (330)
Q Consensus 156 ~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~-----~ 222 (330)
+++... .+.|..+|... ++ ...+......+..++|+|+++.++ +.+.++.|.+||+.. +..... .
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~ 226 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDF-RT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP 226 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTS-CC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE
T ss_pred EEEeccccccCCCceEEEEeCCC-CE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEE
Confidence 555443 35566666654 22 222333345678999999998665 445678999999864 222111 0
Q ss_pred --eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCC------CeEEEEEecCCCEEEEeecCC
Q psy6213 223 --INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKD------VVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 223 --~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~s~~~dg 294 (330)
......+..++++++|.. +++.. .++.|.+||.. ++. +..+..+.. .+.+++|+||++.|+.++.++
T Consensus 227 ~~~~~~~~~~~i~~d~~G~l-~v~~~--~~~~v~~~d~~-g~~-~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 227 YYFTGHEGPDSCCIDSDDNL-YVAMY--GQGRVLVFNKR-GYP-IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EECCSSSEEEEEEEBTTCCE-EEEEE--TTTEEEEECTT-SCE-EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EecCCCCCCCceEECCCCCE-EEEEc--CCCEEEEECCC-CCE-EEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 011136788999999985 44444 47899999984 433 445544332 689999999987777666654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-18 Score=136.97 Aligned_cols=243 Identities=11% Similarity=0.085 Sum_probs=169.7
Q ss_pred CcccceEEEEeeCCCeeec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-CCcEEEE
Q psy6213 3 YLSPVHKHGLKADNGLAQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-NGAVVVW 79 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw 79 (330)
|...+.+++++|+|+++++ . ++.|.+||.+ ++....+.... ........+..+++.+.++.++++... ++.|.+|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~-~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG-KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS-SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC-CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 4567899999999998544 4 9999999987 44444332211 111112235889995326666666643 7899999
Q ss_pred ECCCCCCCceeEEec-ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee--cCCCCeEEEEEcCCCCcEE
Q psy6213 80 NLGQISRSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH--SNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~ 156 (330)
+.. .+....+. .+...+..+++.| +++++++...++.|.+||.. ++.+..+. .+...+..++++|++. ++
T Consensus 106 d~~----g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~-l~ 178 (286)
T 1q7f_A 106 NQY----GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-IF 178 (286)
T ss_dssp CTT----SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-EE
T ss_pred CCC----CcEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC-EE
Confidence 943 34444443 3345788999998 77888887778999999964 55555554 2345689999999987 67
Q ss_pred EEEecCCcEEEEecCCCccceeeeccC--CCCeEEEEEcCCCCEEEEEecCC-cEEEEeCCCCccccceecc--ccceEE
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQFTAH--SGPIFACDWHPEHAWLATASRDK-TIKVWDLSIKPSLEYSINT--IASVSR 231 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~--~~~v~~ 231 (330)
++...++.|++||... ..+..+..+ ...+..++++|+|+++++...++ .|.+||.... .......+ ...+..
T Consensus 179 v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LISALESKVKHAQCFD 255 (286)
T ss_dssp EEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEEEEEESSCCSCEEE
T ss_pred EEECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEEEEcccCCCCccee
Confidence 7777889999999753 344444332 35789999999999888888776 9999996543 33322222 234789
Q ss_pred EEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 232 IKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
++++|+|+ ++++. .++.|++|++...
T Consensus 256 i~~~~~g~-l~vs~---~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 256 VALMDDGS-VVLAS---KDYRLYIYRYVQL 281 (286)
T ss_dssp EEEETTTE-EEEEE---TTTEEEEEECSCC
T ss_pred EEECCCCc-EEEEC---CCCeEEEEEcccc
Confidence 99999997 45554 4899999998653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-18 Score=143.29 Aligned_cols=261 Identities=11% Similarity=0.047 Sum_probs=175.9
Q ss_pred EEEEeeCCCe-eec---------C--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC--CC
Q psy6213 9 KHGLKADNGL-AQP---------S--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT--NG 74 (330)
Q Consensus 9 ~~~~s~~~~~-~~~---------g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg 74 (330)
.++|+|||++ .++ | ++.|.+||..+.+....+........ .......++++| ++++|+++.. ++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~-~g~~p~~i~~sp-dg~~l~v~n~~~~~ 131 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ-GLNYDGLFRQTT-DGKFIVLQNASPAT 131 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC-BCCCGGGEEECT-TSSEEEEEEESSSE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc-cCCCcceEEECC-CCCEEEEECCCCCC
Confidence 7899999998 333 1 56799999998887766654321110 111237899999 9999988864 57
Q ss_pred cEEEEECCCCCCCceeEE-ecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec-Cceee------eeecCCCCeEEE
Q psy6213 75 AVVVWNLGQISRSKQERV-FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC-QESTK------IFHSNTESVRDV 146 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~------~~~~~~~~v~~~ 146 (330)
.|.+||+.+ .+.+.. +.. .....+.+.|.+...+++.+.||.+.+|++.. ++... .+.....++ .+
T Consensus 132 ~v~v~d~~~---~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~ 205 (361)
T 2oiz_A 132 SIGIVDVAK---GDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FI 205 (361)
T ss_dssp EEEEEETTT---TEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CS
T ss_pred eEEEEECCC---CcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EE
Confidence 899999988 555555 432 12233556775557888899999999999865 44331 122222222 33
Q ss_pred EEcCCCCcEEEEEecCCcEEEEecCCCccce-eeecc------C----CCCeEEEEEcCCCCEEEEEec-----------
Q psy6213 147 EFNPHSPYAFASVSENGTIQQWDVRRPEKCF-YQFTA------H----SGPIFACDWHPEHAWLATASR----------- 204 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-~~~~~------~----~~~i~~~~~~~~~~~l~~~~~----------- 204 (330)
.+++++.. ++..+.++.++++|+......+ ..+.. + ......++|+|+++.++++..
T Consensus 206 ~~~~~g~~-~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~ 284 (361)
T 2oiz_A 206 APALDKDK-AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFP 284 (361)
T ss_dssp CCEECSSE-EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCC
T ss_pred EecccCCE-EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCC
Confidence 44677764 5566778999999987532111 11110 0 112223789999887777643
Q ss_pred CCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC--CccceEeecCCCCeEEEEEec
Q psy6213 205 DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP--YIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 205 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~ 282 (330)
.+.|.+||+.+.+.+.....+. +..++|+|+|+++ ++++ . +.|.+||..++ +. +..+..+......++++|
T Consensus 285 ~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l-~v~n--~-~~v~v~D~~t~~l~~-~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 285 AAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLM-LTLD--G-GNVNVYDISQPEPKL-LRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp CSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEE-EEEC--S-SCEEEEECSSSSCEE-EEEETTSCSSEEEEEECC
T ss_pred CceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEE-EEeC--C-CeEEEEECCCCccee-eEEeccCCCCcEEEEecC
Confidence 3479999999986554444333 9999999999974 4555 4 99999999998 55 566556677889999999
Q ss_pred CCC
Q psy6213 283 DPQ 285 (330)
Q Consensus 283 ~~~ 285 (330)
+|+
T Consensus 358 ~G~ 360 (361)
T 2oiz_A 358 VGG 360 (361)
T ss_dssp CSC
T ss_pred CCC
Confidence 985
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-17 Score=130.63 Aligned_cols=275 Identities=7% Similarity=-0.030 Sum_probs=187.7
Q ss_pred CcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 3 YLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
+...+.++++.++|++ ++.. ++.|.+||.. ++.... .... ....+.++++.+ ++.++++...++.|..|+
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~-~~~~-----~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEY-PLPT-----PDAKVMCLTISS-DGEVWFTENAANKIGRIT 84 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEE-ECSS-----TTCCEEEEEECT-TSCEEEEETTTTEEEEEC
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEe-cCCc-----ccCceeeEEECC-CCCEEEeCCCCCeEEEEC
Confidence 3467899999999998 5555 8999999988 554322 1111 112358899998 888888777788899998
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeee-eecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI-FHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
... ......+......+..+++.| ++.++++...++.|..||. +++.... .......+..+++.+++. ++++.
T Consensus 85 ~~g---~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~ 158 (299)
T 2z2n_A 85 KKG---IIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTE 158 (299)
T ss_dssp TTS---CEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEE
T ss_pred CCC---cEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEe
Confidence 753 111122223445788999997 7787777777889999998 5544322 222345689999999986 66666
Q ss_pred ecCCcEEEEecCCCcccee-eeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee-ccccceEEEEEcCC
Q psy6213 160 SENGTIQQWDVRRPEKCFY-QFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI-NTIASVSRIKWRPQ 237 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~ 237 (330)
..++.|..||. + ++... ........+..++++++|++.++...++.|..||. +++...... .....+..++++++
T Consensus 159 ~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 159 NQNNAIGRITE-S-GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAG 235 (299)
T ss_dssp TTTTEEEEECT-T-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred CCCCEEEEEcC-C-CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCC
Confidence 66789999998 4 33222 23334456889999999997777767889999998 553322211 23467899999999
Q ss_pred CCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 238 RKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
|.. +++.. .++.|..||.. +.........+...+.++++ +++++.++.+ .+.+..++
T Consensus 236 g~l-~v~~~--~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 236 IDL-WFTEW--GANKIGRLTSN-NIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLT 292 (299)
T ss_dssp TCE-EEEET--TTTEEEEEETT-TEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred CCE-EEecc--CCceEEEECCC-CceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence 984 55553 48999999983 43211222344567999999 8888777655 44555544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=156.86 Aligned_cols=243 Identities=8% Similarity=-0.021 Sum_probs=154.4
Q ss_pred EEEEe--eCCCe-eecC---CCeEEEEEcC--C-cceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC------
Q psy6213 9 KHGLK--ADNGL-AQPS---RNVFKIFLIK--D-TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN------ 73 (330)
Q Consensus 9 ~~~~s--~~~~~-~~~g---d~~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------ 73 (330)
...|+ |||+. ++.. +..|.++++. . ++.. .+.... .......+..++|+| +++.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~--~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~ 156 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVS--AVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGP 156 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCC--CSTTCEEEEEEEEET-TTTEEEEEEEEECSSST
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCc--cCCCCccccCcEECC-CCCEEEEEEecccCCCC
Confidence 55565 99998 6655 4556666655 2 3322 222110 000122357899999 99999988876
Q ss_pred ----CcEEEEECCCCC--CCceeEEec-ccccceeEEEEEecCCCEEEEEecC--------CcEEEEEee-cC---ceee
Q psy6213 74 ----GAVVVWNLGQIS--RSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQD--------GTMRLFDIR-CQ---ESTK 134 (330)
Q Consensus 74 ----g~i~iw~~~~~~--~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d--------~~i~i~d~~-~~---~~~~ 134 (330)
..|.+||+.+.. .......+. .+...+..++|+| ++++|+.++.+ ..|++||+. ++ +...
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 157 SDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp TCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred CCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 579999987610 002334444 5567888899999 88988877755 379999998 56 4444
Q ss_pred eeecCCCCeEEEEEcCCCCcEEEEEecCC--cEEEEecCCCccceeeeccCCCC--------eEEEEEcCCCCEEEEEec
Q psy6213 135 IFHSNTESVRDVEFNPHSPYAFASVSENG--TIQQWDVRRPEKCFYQFTAHSGP--------IFACDWHPEHAWLATASR 204 (330)
Q Consensus 135 ~~~~~~~~v~~~~~~~~~~~~~~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~ 204 (330)
....+...+..++|+|+|+ +++++..++ .|.+||+.+ ++.......+... +..++|+|++++++++..
T Consensus 236 l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~-~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~ 313 (662)
T 3azo_A 236 LLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPAT-GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK 313 (662)
T ss_dssp EEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTT-CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred eCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCC-CceeecccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence 4444577899999999999 788888888 566666654 3332222222221 567899999999999998
Q ss_pred CCcEEEE--eCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCC--eEEEEEccCCC
Q psy6213 205 DKTIKVW--DLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDS--SVNVWDIRRPY 262 (330)
Q Consensus 205 dg~i~i~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~--~i~i~d~~~~~ 262 (330)
+.+++| |+.+++ ......+...+..+ +++++..++..++. .+. .|.++|+.+++
T Consensus 314 -~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~~~~~-~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 314 -GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVGVAAS-PRTAYEVVELDTVTGR 371 (662)
T ss_dssp -SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEEEEEE-TTEEEEEEEEETTTCC
T ss_pred -CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEEEEcC-CCCCCEEEEEECCCCc
Confidence 999999 555443 33333445556665 14445444433331 343 56666766665
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.9e-18 Score=133.86 Aligned_cols=240 Identities=7% Similarity=-0.020 Sum_probs=166.5
Q ss_pred ceeeeeecccCCcEEE-EEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc
Q psy6213 53 SCNDVAWSCIEENHIA-TGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE 131 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 131 (330)
...++++++ ++++++ +...++.|.+|+..+ .........+...+.++++.+ +++++++.. ++.|..||.....
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGS---TGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC--------EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSC
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCC---cccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCce
Confidence 358899999 888776 546788999998765 222211122335678899997 777666655 8899999987554
Q ss_pred eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 132 STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 132 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
...........+..+++++++. ++++...++.|.+|+..+. ............+..++++++|+++++...++.|.+|
T Consensus 99 ~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 99 QTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSK-TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CEECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCC-SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred EeeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCc-eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 3322222335789999999987 6777777889999986542 2222222233467899999999977777778899999
Q ss_pred eCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEee
Q psy6213 212 DLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 212 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
|................+..++++++|. ++++.. .++.|.+||...... ......+...+.+++++|+|+++++..
T Consensus 177 ~~~~~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~--~~~~v~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 177 EAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEH--NTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp CTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEET--TTSCEEEECTTCSCC-EECCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred ecCCCceEeecccCCCCceEEEECCCCC-EEEEEC--CCCcEEEEcCCCCcc-eeeccCCCCCceeEEECCCCCEEEEEC
Confidence 9877643332223336788999999996 455554 488999999876543 222223335789999999999888889
Q ss_pred cCCeEeeeeccce
Q psy6213 292 RVSIIPRAKNIKI 304 (330)
Q Consensus 292 ~dg~i~iw~~~~~ 304 (330)
.++.|++++....
T Consensus 253 ~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 253 GNDRVVKLTSLEH 265 (270)
T ss_dssp GGTEEEEECCCGG
T ss_pred CCCEEEEEcCCCc
Confidence 9999999976543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-17 Score=148.39 Aligned_cols=248 Identities=10% Similarity=0.052 Sum_probs=170.3
Q ss_pred CcccceEEEEeeCCCeeecC---CC----eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCc
Q psy6213 3 YLSPVHKHGLKADNGLAQPS---RN----VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA 75 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g---d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 75 (330)
|...+..++|||||++++.+ +| .|++||+++++..... ..... +..++|+| +++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~~~-------~~~~~wsp-Dg~~l~~~~~~~~ 193 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVK-------FSCMAWTH-DGKGMFYNAYPQQ 193 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEEC-------SCCEEECT-TSSEEEEEECCCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccCcc-------cceEEEEe-CCCEEEEEEECCc
Confidence 33468899999999995543 33 8999999998866532 11111 36799999 9999988887765
Q ss_pred ----------------EEEEECCCCCCCceeEEec--ccccceeEEEEEecCCCEEEEEec-----CCcEEEEEeec---
Q psy6213 76 ----------------VVVWNLGQISRSKQERVFN--DHKRTVNKVSFHYVESNWLISGSQ-----DGTMRLFDIRC--- 129 (330)
Q Consensus 76 ----------------i~iw~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~-----d~~i~i~d~~~--- 129 (330)
|++|++.+.. ......+. .+...+..+.|+| ++++|+.++. +..|++||+.+
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~-~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQ-SEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCG-GGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred cccccccccccCCCCEEEEEECCCCc-ccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECccccc
Confidence 9999997732 11122222 3455678999998 8888877664 56899999986
Q ss_pred ---Cc-eeeeeecCCCCeEEEEEcCCCCcEEEEEecC---CcEEEEecCCCcc-ceeeeccCCC--CeEEEEEcCCCCEE
Q psy6213 130 ---QE-STKIFHSNTESVRDVEFNPHSPYAFASVSEN---GTIQQWDVRRPEK-CFYQFTAHSG--PIFACDWHPEHAWL 199 (330)
Q Consensus 130 ---~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~--~i~~~~~~~~~~~l 199 (330)
+. ....+..+...+.. .|+|+++.+++.+..+ +.|.+||+.++.. ....+..+.. .+..++|++++.++
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv 350 (710)
T 2xdw_A 272 GITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV 350 (710)
T ss_dssp SSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred ccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE
Confidence 43 35555555555554 5889998655555433 3699999987432 2344444443 67889999888888
Q ss_pred EEEecCCc--EEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEee-cccCCeEEEEEccCCC
Q psy6213 200 ATASRDKT--IKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCS-LVVDSSVNVWDIRRPY 262 (330)
Q Consensus 200 ~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~i~i~d~~~~~ 262 (330)
++...|+. |.+||+.+++.......+...+..+.++|+++.++.+.+ ....+.++.||+.+++
T Consensus 351 ~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 351 LCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 88888885 566777555433333334667889999999987665543 1235799999998765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-17 Score=132.80 Aligned_cols=265 Identities=9% Similarity=0.028 Sum_probs=181.1
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeE
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNK 102 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~ 102 (330)
++.|.++|.++++.......... ...+......+++. ++.++++...++.|.+||..+ .+.+..+. .......
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n-~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t---~~~~~~i~-~~~~p~~ 88 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRAN-GFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINT---FKEVGRIT-GFTSPRY 88 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHH-SSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTT---CCEEEEEE-CCSSEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhc-CcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcc---cEEEEEcC-CCCCCcE
Confidence 78999999999887654421100 11122223667764 566677777789999999988 66666664 3467889
Q ss_pred EEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCC-----CCeEEEEEcCCCCcEEEEEe-cCCcEEEEecCCCccc
Q psy6213 103 VSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNT-----ESVRDVEFNPHSPYAFASVS-ENGTIQQWDVRRPEKC 176 (330)
Q Consensus 103 i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~ 176 (330)
+++++ ++.++++...++.|.+||..+++....+.... .....+++ ++..++++.. .++.|.++|+.+ .+.
T Consensus 89 i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t-~~~ 164 (328)
T 3dsm_A 89 IHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTET-DKV 164 (328)
T ss_dssp EEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTT-TEE
T ss_pred EEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCC-CeE
Confidence 99987 66554554478999999999988777666433 14556777 3444555544 488999999997 455
Q ss_pred eeeeccCCCCeEEEEEcCCCCEEEEEecC----------CcEEEEeCCCCcccccee-ccccceEEEEEcCCCCeEEEEe
Q psy6213 177 FYQFTAHSGPIFACDWHPEHAWLATASRD----------KTIKVWDLSIKPSLEYSI-NTIASVSRIKWRPQRKFHLASC 245 (330)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 245 (330)
...+.. ......+.++|+|++++++..+ +.|.++|..+.+...... ........++|+|+++.++++
T Consensus 165 ~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~- 242 (328)
T 3dsm_A 165 VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI- 242 (328)
T ss_dssp EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE-
T ss_pred EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE-
Confidence 555543 3446789999999977776654 789999998875432222 223478999999999975554
Q ss_pred ecccCCeEEEEEccCCCccceE-eecCCCCeEEEEEec-CCCEEEEe----ecCCeEeeeeccce
Q psy6213 246 SLVVDSSVNVWDIRRPYIPLAS-FTEHKDVVSGLAWRG-DPQLFIAS----SRVSIIPRAKNIKI 304 (330)
Q Consensus 246 ~~~~~~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~s~----~~dg~i~iw~~~~~ 304 (330)
++.|.+||..+++..... .........+++++| ++.+.++. ..++.|.+|+....
T Consensus 243 ----~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~ 303 (328)
T 3dsm_A 243 ----NNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGK 303 (328)
T ss_dssp ----SSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCC
T ss_pred ----ccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCC
Confidence 238999999877642111 222245789999999 56666665 57899999986543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-16 Score=145.24 Aligned_cols=238 Identities=9% Similarity=0.054 Sum_probs=164.3
Q ss_pred ceeeeeecccCCcEEEEEcCCC-----cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCc------
Q psy6213 53 SCNDVAWSCIEENHIATGATNG-----AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGT------ 121 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~------ 121 (330)
.+..++||| ++++||.+..++ .|++||+.+ ++...... ....+..++|+| +++.|+.++.++.
T Consensus 126 ~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~t---g~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 126 ALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDG---AKELPDVL-ERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp EEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTT---TEEEEEEE-EEECSCCEEECT-TSSEEEEEECCCCSSCCSS
T ss_pred EEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCC---CCCCcccc-cCcccceEEEEe-CCCEEEEEEECCccccccc
Confidence 468899999 999988765543 899999987 44443222 222367899999 8888888887765
Q ss_pred ----------EEEEEeecCcee--eeeec--CCCCeEEEEEcCCCCcEEEEEec----CCcEEEEecCC------Cccce
Q psy6213 122 ----------MRLFDIRCQEST--KIFHS--NTESVRDVEFNPHSPYAFASVSE----NGTIQQWDVRR------PEKCF 177 (330)
Q Consensus 122 ----------i~i~d~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~------~~~~~ 177 (330)
|++|++.+++.. ..+.. +...+..+.|+|++++++++... +..|++||+.+ +....
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 999999877632 22232 34557899999999975554432 56899999976 33245
Q ss_pred eeeccCCCCeEEEEEcCCCCEEEEEecCC----cEEEEeCCCCcc--ccceecccc--ceEEEEEcCCCCeEEEEeeccc
Q psy6213 178 YQFTAHSGPIFACDWHPEHAWLATASRDK----TIKVWDLSIKPS--LEYSINTIA--SVSRIKWRPQRKFHLASCSLVV 249 (330)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~--~~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~ 249 (330)
..+..+...+.. .|+|+|+.|+..+.++ .|.+||+.++.. ......+.. .+..++|++++. ++++.. .
T Consensus 280 ~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~--~ 355 (710)
T 2xdw_A 280 VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYL--H 355 (710)
T ss_dssp EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE-EEEEEE--E
T ss_pred EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE-EEEEEE--E
Confidence 556666665554 4888998887776533 599999987642 233333333 688899987665 566665 4
Q ss_pred CC--eEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEee----cCCeEeeeec
Q psy6213 250 DS--SVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS----RVSIIPRAKN 301 (330)
Q Consensus 250 ~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----~dg~i~iw~~ 301 (330)
++ .|.+|++.+++. ...+..+.+.+..++++|++..++... ..+.++.|+.
T Consensus 356 ~g~~~l~~~~~~~g~~-~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 356 DVKNTLQLHDLATGAL-LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp TTEEEEEEEETTTCCE-EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CCEEEEEEEECCCCCE-EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 76 466677756654 566777777899999999987666432 3467888875
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-18 Score=143.24 Aligned_cols=261 Identities=6% Similarity=-0.038 Sum_probs=165.2
Q ss_pred EEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC---CcEEEEECCCCCCCceeEEecccccceeEEE
Q psy6213 28 IFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN---GAVVVWNLGQISRSKQERVFNDHKRTVNKVS 104 (330)
Q Consensus 28 iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~ 104 (330)
..|..+++....+..+... .....+..++|+| ++++|+..... ..|.+||+.+ .+.......+......+.
T Consensus 14 ~~d~~~g~~~~~l~~~~~~--~~~~~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~---~~~~~l~~~~~~~~~~~~ 87 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDII--CHRNYFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLET---QQAVQLTEGKGDNTFGGF 87 (396)
T ss_dssp EECTTTCCEEEECSCTTSC--EECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTT---TEEEECCCSSCBCTTTCE
T ss_pred eecCCCCcceEEEecCCCC--ccceeeecCcCCC-CCCEEEEEEecCCCceEEEEECCC---CcEEEeecCCCCccccce
Confidence 3466666655444322111 1111146789999 88887766443 3688888876 343333232322233478
Q ss_pred EEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEE-------------------EEEcCCCCcEEEEE----ec
Q psy6213 105 FHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRD-------------------VEFNPHSPYAFASV----SE 161 (330)
Q Consensus 105 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~~~~----~~ 161 (330)
|+| +++.|+.++.++.|++||+.+++.......+...... +.|+|+++.+++.. ..
T Consensus 88 ~sp-dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~ 166 (396)
T 3c5m_A 88 IST-DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP 166 (396)
T ss_dssp ECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred ECC-CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence 998 8999999998889999999888766555544432222 34677777532222 35
Q ss_pred CCcEEEEecCCCccceeeeccCCCCeEEEEEcC-CCCEEEEEecC------CcEEEEeCCCCccccceecc-ccceEEEE
Q psy6213 162 NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP-EHAWLATASRD------KTIKVWDLSIKPSLEYSINT-IASVSRIK 233 (330)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~~~v~~~~ 233 (330)
+..|++||+.++ +.. .+..+...+..+.|+| +++.|+..+.+ ..|.+||+...+........ ...+..++
T Consensus 167 ~~~l~~~d~~~g-~~~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 167 TCRLIKVDIETG-ELE-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF 244 (396)
T ss_dssp CEEEEEEETTTC-CEE-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE
T ss_pred cceEEEEECCCC-cEE-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE
Confidence 668999999873 333 3334667889999999 78877766543 36888998765322222221 34688899
Q ss_pred EcCCCCeEEEEeecccC--CeEEEEEccCCCccceEeecCCCCeEEEEEec-CCCEEEEee----------------cCC
Q psy6213 234 WRPQRKFHLASCSLVVD--SSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG-DPQLFIASS----------------RVS 294 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~----------------~dg 294 (330)
|+|+|++++........ +.|++||+.+++. ..+..... .. +.|+| ||+++++++ .++
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCe--EEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence 99999986666541112 4599999987753 22221122 33 89999 999888765 346
Q ss_pred eEeeeec
Q psy6213 295 IIPRAKN 301 (330)
Q Consensus 295 ~i~iw~~ 301 (330)
.|++|+.
T Consensus 321 ~i~~~d~ 327 (396)
T 3c5m_A 321 FLYVLNT 327 (396)
T ss_dssp EEEEEET
T ss_pred cEEEEec
Confidence 7888874
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-17 Score=135.07 Aligned_cols=235 Identities=10% Similarity=0.074 Sum_probs=168.9
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
+.+++|++ +...++..+.++.++.|. ......+..+...+.+++|+| ++++++++..++.|.+||.++++..
T Consensus 8 ~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 8 LPTLFYSG-KSNSAVPIISESELQTIT------AEPWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCBCCSCG-GGGCSSCCCCGGGSCEEE------CEEEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cceeeecC-CccceeEEeecccCcccc------cceeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEE
Confidence 57889998 777777777788899992 345555666667789999998 7888888888999999999887765
Q ss_pred eeeecCCCCeEEEEEcCCCCcEEEEEecC----CcEEEEecCCCccceeeec--cCCCCeEEEEEcCCCCEEEEEec---
Q psy6213 134 KIFHSNTESVRDVEFNPHSPYAFASVSEN----GTIQQWDVRRPEKCFYQFT--AHSGPIFACDWHPEHAWLATASR--- 204 (330)
Q Consensus 134 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d----g~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~--- 204 (330)
.....+...+.+++++|++. ++++...+ +.|.+||..+. .....+. .+...+..++++|+|+++++...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 157 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGD-NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS 157 (333)
T ss_dssp EEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSC-SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred EEeeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCC-EEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence 54434567899999999997 56666655 68999998863 3221222 23457899999999987776653
Q ss_pred ---CCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceE--------eecCCC
Q psy6213 205 ---DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLAS--------FTEHKD 273 (330)
Q Consensus 205 ---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~--------~~~~~~ 273 (330)
.+.|..+|..+++. .........+..++|+|+++.++++.. .++.|.+||+......... +.++ .
T Consensus 158 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~ 233 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGH-E 233 (333)
T ss_dssp TBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S
T ss_pred cCCCceEEEEeCCCCEE-EEeecCCCcccceEECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCC-C
Confidence 35566676655422 222233345788999999987666665 5889999999642111211 1122 4
Q ss_pred CeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 274 VVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 274 ~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+.+++++++|+++++...++.|.+|+..
T Consensus 234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 67889999999988888788999999764
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-17 Score=128.80 Aligned_cols=238 Identities=7% Similarity=-0.000 Sum_probs=163.0
Q ss_pred cceEEEEeeCCCeee-c-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 6 PVHKHGLKADNGLAQ-P-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~-~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
...+++++++|++.+ + . ++.|.+|+..+....... .. ....+.++++.+ +++++++.. ++.|.+||..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~~------~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FN------GLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-CC------SCCSCCCEEECT-TCCEEEEET-TTEEEEECTT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-eC------CcCCcceeEECC-CCCEEEEcC-CCEEEEEeCC
Confidence 677899999999844 4 4 899999987654432211 10 011247899998 788666665 8899999986
Q ss_pred CCCCCceeEEec-ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec
Q psy6213 83 QISRSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 83 ~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
. .. ...+. .....+..+++.| +++++++...++.|.+|+..+.............+..+++++++. ++++...
T Consensus 96 ~---~~-~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~ 169 (270)
T 1rwi_B 96 S---NN-QTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD 169 (270)
T ss_dssp C---SC-CEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGG
T ss_pred C---ce-EeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEECC
Confidence 5 22 22222 2235688999998 778777777788999997654433322222334678899999997 6777777
Q ss_pred CCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeE
Q psy6213 162 NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFH 241 (330)
Q Consensus 162 dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 241 (330)
++.|.+||.... ........+...+..++++++|.++++...++.|.+||................+..++++|+|+ +
T Consensus 170 ~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l 247 (270)
T 1rwi_B 170 NNRVVKLEAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-V 247 (270)
T ss_dssp GTEEEEECTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-E
T ss_pred CCEEEEEecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-E
Confidence 889999998763 22222223336788999999998777777788999999876533322222335789999999998 5
Q ss_pred EEEeecccCCeEEEEEccCCC
Q psy6213 242 LASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 242 ~~~~~~~~~~~i~i~d~~~~~ 262 (330)
+++.. .++.|+++++...+
T Consensus 248 ~v~~~--~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 248 YVADR--GNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEG--GGTEEEEECCCGGG
T ss_pred EEEEC--CCCEEEEEcCCCcc
Confidence 66655 59999999987654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-16 Score=135.39 Aligned_cols=281 Identities=15% Similarity=0.141 Sum_probs=187.9
Q ss_pred cceEEEEeeCCCe-eecC-CCeEEEEEcC--Ccceeeeeceeeccccccccceeeeeec----ccCCcEEEEEcC-CCcE
Q psy6213 6 PVHKHGLKADNGL-AQPS-RNVFKIFLIK--DTEFVETHNLRVGKNINLNFSCNDVAWS----CIEENHIATGAT-NGAV 76 (330)
Q Consensus 6 ~v~~~~~s~~~~~-~~~g-d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~-dg~i 76 (330)
.+..+.|+|||++ ++++ ++.|.+||+. +.+....+.. +. ....++|+ | ++++++++.. ++.+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~------~P~~ia~s~~~~p-DGk~l~v~n~~~~~v 268 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GS------EARSIETSKMEGW-EDKYAIAGAYWPPQY 268 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CS------EEEEEEECCSTTC-TTTEEEEEEEETTEE
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CC------CCceeEEccccCC-CCCEEEEEEccCCeE
Confidence 4678999999999 5555 9999999996 5555543332 11 13789999 7 8887777665 5899
Q ss_pred EEEECCCCCCCceeEEecc----------cc-cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee--eeecCCCCe
Q psy6213 77 VVWNLGQISRSKQERVFND----------HK-RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK--IFHSNTESV 143 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~----------~~-~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~v 143 (330)
.++|..+ .+.+..+.. |. ..+..+..++.+..+++....+|.|.++|..+.+... .+. .....
T Consensus 269 ~ViD~~t---~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~ 344 (567)
T 1qks_A 269 VIMDGET---LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFL 344 (567)
T ss_dssp EEEETTT---CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSE
T ss_pred EEEECCC---CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccc
Confidence 9999887 555554432 11 2577888887555566666778999999987654322 222 34567
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc-----CCCCeEEEEEcCCCCEE-EEEe-cCCcEEEEeCCCC
Q psy6213 144 RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA-----HSGPIFACDWHPEHAWL-ATAS-RDKTIKVWDLSIK 216 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l-~~~~-~dg~i~i~d~~~~ 216 (330)
..+.|+|++++++++...++.|.++|+.+ .+....+.. |.+.-..+ ++|++..+ +++. .++.|.++|....
T Consensus 345 ~d~~~~pdgr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 345 HDGGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred cCceECCCCCEEEEEeCCCCeEEEEECCC-CcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 78999999998777777889999999998 444443332 43322222 57875544 4443 4689999998873
Q ss_pred -------ccccceeccccceEEEEEcCCCCeEEEEeeccc----CCeEEEEEccCC-----CccceEee--------cCC
Q psy6213 217 -------PSLEYSINTIASVSRIKWRPQRKFHLASCSLVV----DSSVNVWDIRRP-----YIPLASFT--------EHK 272 (330)
Q Consensus 217 -------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~----~~~i~i~d~~~~-----~~~~~~~~--------~~~ 272 (330)
+.+.........-..+..+|+++++.+...... .++|.++|+.+. ......+. ...
T Consensus 423 ~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 502 (567)
T 1qks_A 423 GHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQ 502 (567)
T ss_dssp TCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSC
T ss_pred CCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCC
Confidence 222222222233345778999999777652101 359999999876 32223332 123
Q ss_pred CCeEEEEEecCCCEEEEeec-----CCeEeeeec
Q psy6213 273 DVVSGLAWRGDPQLFIASSR-----VSIIPRAKN 301 (330)
Q Consensus 273 ~~v~~~~~~~~~~~l~s~~~-----dg~i~iw~~ 301 (330)
..+..+.|+|+|+.+..+.. ++.|.+++.
T Consensus 503 ~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 503 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred cceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 57899999999998887743 688999864
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-17 Score=149.92 Aligned_cols=247 Identities=7% Similarity=0.034 Sum_probs=164.6
Q ss_pred CcccceEEEEeeCCCeee-----cC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCc
Q psy6213 3 YLSPVHKHGLKADNGLAQ-----PS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA 75 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~-----~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 75 (330)
|...+.+++|||||++++ .| +..|++||+++++........ . .. ...++|+| +++.|+.++.+..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~---~~--~~~~~wsp-Dg~~l~~~~~d~~ 190 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE--G---GK--YATPKWTP-DSKGFYYEWLPTD 190 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS--C---CT--TCCCEECT-TSSEEEEEECCCC
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC--c---cc--ccceEEec-CCCEEEEEEecCC
Confidence 555789999999999966 44 578999999998754111111 1 11 15789999 9999998888765
Q ss_pred -------------EEEEECCCCCCC-ceeEEecccccceeEEEEEecCCCEEEEEecCC----cEEEEEeecCceeeeee
Q psy6213 76 -------------VVVWNLGQISRS-KQERVFNDHKRTVNKVSFHYVESNWLISGSQDG----TMRLFDIRCQESTKIFH 137 (330)
Q Consensus 76 -------------i~iw~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~ 137 (330)
|++|++.+.... ..+.....+...+..+.|+| ++++|+.++.++ .|++||..+++ ...+.
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~ 268 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLV 268 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEE
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEee
Confidence 999999873211 12223334556788999999 778777776665 67777655444 34444
Q ss_pred cCCCCeEEEEEcCCCCcEEEEEe---cCCcEEEEecCCCcc-ceeeeccC--CCCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 138 SNTESVRDVEFNPHSPYAFASVS---ENGTIQQWDVRRPEK-CFYQFTAH--SGPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 138 ~~~~~v~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~-~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
.+...+....+ +++. +++.+. .++.|.+||+.++.. ....+..+ ...+..++|+ ++.++++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 45555666666 6676 666665 357899999976432 12233333 4457888888 67788888999988888
Q ss_pred eCC-CCccccce-eccccceEEEEEcCCCCeEEEEee-cccCCeEEEEEccCCC
Q psy6213 212 DLS-IKPSLEYS-INTIASVSRIKWRPQRKFHLASCS-LVVDSSVNVWDIRRPY 262 (330)
Q Consensus 212 d~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~i~i~d~~~~~ 262 (330)
.+. .+...... ......+..+.++|+++.++.+.+ ....+.|++||+.+++
T Consensus 346 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 654 23222222 223566778889999987665553 1134789999998776
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-17 Score=131.25 Aligned_cols=226 Identities=10% Similarity=0.001 Sum_probs=162.6
Q ss_pred eeeeeecccCCc-EEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 54 CNDVAWSCIEEN-HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 54 v~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
..+++|+| +++ +++++..++.|..|+..+ . ...+..+...+.+++++| +++++++...++.|.+||..+++.
T Consensus 30 ~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~---~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 30 TEGPVYVP-ARSAVIFSDVRQNRTWAWSDDG---Q--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp EEEEEEEG-GGTEEEEEEGGGTEEEEEETTS---C--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCE
T ss_pred ccCCeEeC-CCCEEEEEeCCCCEEEEEECCC---C--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcE
Confidence 37899999 776 788888899999999886 3 455566777899999998 888877777678999999977765
Q ss_pred eeeeecC----CCCeEEEEEcCCCCcEEEEE----e-------------cCCcEEEEecCCCccceeeeccCCCCeEEEE
Q psy6213 133 TKIFHSN----TESVRDVEFNPHSPYAFASV----S-------------ENGTIQQWDVRRPEKCFYQFTAHSGPIFACD 191 (330)
Q Consensus 133 ~~~~~~~----~~~v~~~~~~~~~~~~~~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~ 191 (330)
....... ...+..++++|+|. ++++. + ..+.|..++.. +. ...+..+......++
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~~~~~~~~gi~ 178 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT-LSAPIRDRVKPNGLA 178 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC-EEEEECCCSSEEEEE
T ss_pred EEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC--CC-EEEeecCCCCCccEE
Confidence 4333211 23467899999997 56652 2 13456666554 22 334445666788999
Q ss_pred EcCCCCEEEEEecCCcEEEEeCC-CCcc---ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceE
Q psy6213 192 WHPEHAWLATASRDKTIKVWDLS-IKPS---LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLAS 267 (330)
Q Consensus 192 ~~~~~~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~ 267 (330)
|+|+++.+++.+.++.|.+||+. .+.. ..........+..++++++|.. +++. ++.|.+||.. ++. +..
T Consensus 179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l-~v~~----~~~v~~~~~~-g~~-~~~ 251 (296)
T 3e5z_A 179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLI-WASA----GDGVHVLTPD-GDE-LGR 251 (296)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCE-EEEE----TTEEEEECTT-SCE-EEE
T ss_pred ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCE-EEEc----CCeEEEECCC-CCE-EEE
Confidence 99999988777788999999986 3322 1111223445678999999984 4443 6789999986 443 566
Q ss_pred eecCCCCeEEEEE-ecCCCEEEEeecCCeEee
Q psy6213 268 FTEHKDVVSGLAW-RGDPQLFIASSRVSIIPR 298 (330)
Q Consensus 268 ~~~~~~~v~~~~~-~~~~~~l~s~~~dg~i~i 298 (330)
+..+.. +.+++| .|+++.|+.++.++..++
T Consensus 252 ~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 252 VLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 666666 999999 589999999888765444
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.4e-16 Score=133.95 Aligned_cols=274 Identities=12% Similarity=0.030 Sum_probs=189.6
Q ss_pred eCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC--CCCCCce
Q psy6213 14 ADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG--QISRSKQ 89 (330)
Q Consensus 14 ~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~ 89 (330)
|.+.+ ++.. ++.|.++|..+++....+.... .+..+.|+| +++++++++.++.|.+||+. + .+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~--------~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t---~~~ 232 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--------AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKE---PTT 232 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS--------CEEEEEECT-TSCEEEEEETTSEEEEEETTSSS---CCE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC--------CccceEECC-CCCEEEEEcCCCeEEEEECCCCC---CcE
Confidence 33444 4444 9999999999988776554321 246899999 99999999999999999995 4 455
Q ss_pred eEEecccccceeEEEEE----ecCCCEEEEEe-cCCcEEEEEeecCceeeeeecC-----------CCCeEEEEEcCCCC
Q psy6213 90 ERVFNDHKRTVNKVSFH----YVESNWLISGS-QDGTMRLFDIRCQESTKIFHSN-----------TESVRDVEFNPHSP 153 (330)
Q Consensus 90 ~~~~~~~~~~i~~i~~~----~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~ 153 (330)
+..+... .....++|+ | +++++++++ .+++|.++|..+.+.+..+... ...+..+..+++++
T Consensus 233 v~~i~~G-~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~ 310 (567)
T 1qks_A 233 VAEIKIG-SEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 310 (567)
T ss_dssp EEEEECC-SEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred eEEEecC-CCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC
Confidence 5555543 346789999 6 777776655 4599999999998887776531 22578889999888
Q ss_pred cEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCcccccee-----cccc
Q psy6213 154 YAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPSLEYSI-----NTIA 227 (330)
Q Consensus 154 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~-----~~~~ 227 (330)
.+++....+|.|.++|....................+.|+|++++++++. .++.|.++|+.+++...... +|.+
T Consensus 311 ~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 311 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 76777778899999998764322221122344577889999999887766 57889999999885432221 2222
Q ss_pred ceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC------ccceEeecCCCCeEEEEEecCCCEEEEeec-------CC
Q psy6213 228 SVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY------IPLASFTEHKDVVSGLAWRGDPQLFIASSR-------VS 294 (330)
Q Consensus 228 ~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------dg 294 (330)
.-.. -++|++..++++... .++.|.++|....+ ..+..+......-..+..+|++++|..... .+
T Consensus 391 ~g~~-~~~p~~g~v~~t~~~-g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~ 468 (567)
T 1qks_A 391 RGAN-FVHPTFGPVWATSHM-GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISG 468 (567)
T ss_dssp TCEE-EEETTTEEEEEEEBS-SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred ccee-eECCCCCcEEEeCCC-CCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCc
Confidence 1212 268886655655431 36899999998621 225666554444345778999999998663 35
Q ss_pred eEeeeeccc
Q psy6213 295 IIPRAKNIK 303 (330)
Q Consensus 295 ~i~iw~~~~ 303 (330)
.|.+++...
T Consensus 469 ~v~v~d~~~ 477 (567)
T 1qks_A 469 SVAVFDIKA 477 (567)
T ss_dssp CEEEEEGGG
T ss_pred eEEEEECCc
Confidence 899987543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-15 Score=121.88 Aligned_cols=275 Identities=8% Similarity=-0.031 Sum_probs=185.8
Q ss_pred cccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 4 LSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
...+.++++.++|++ ++.. ++.|.+|+.. ++... +.... ....+.++++.+ +++++++...++.|..+|.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~-----~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT-----PDAKVMCLIVSS-LGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS-----TTCCEEEEEECT-TSCEEEEETTTTEEEEECT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC-----CCCcceeEEECC-CCCEEEEecCCCeEEEECC
Confidence 356789999999998 5554 8999999988 55443 22111 112358899998 8887777776788999987
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeee-eecCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI-FHSNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
.. .............+.++++.+ +++++++...++.|..+|.. ++.... +......+..+++.+++. ++++..
T Consensus 91 ~g---~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~ 164 (300)
T 2qc5_A 91 KG---GFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTEN 164 (300)
T ss_dssp TS---CEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEET
T ss_pred CC---CeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEec
Confidence 63 222222232346788999997 77877777667899999987 544322 222345789999999998 666666
Q ss_pred cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee-ccccceEEEEEcCCCC
Q psy6213 161 ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI-NTIASVSRIKWRPQRK 239 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 239 (330)
.++.|..+|. ++.........+...+..++++++|++.++....+.|.+||. ++....... .....+..++++++|.
T Consensus 165 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 165 QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE 242 (300)
T ss_dssp TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC
Confidence 6788999998 322222222234456889999999987777767778999998 332222211 2345688999999998
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
. .++.. .++.|..||.. +.............+.+++++++|++.++.. . .|..++
T Consensus 243 l-~v~~~--~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 243 I-WFTEW--GANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp E-EEEET--TTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred E-EEecc--CCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence 4 55554 47999999984 4321222333345688999999998666654 4 555554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-16 Score=126.99 Aligned_cols=234 Identities=9% Similarity=0.002 Sum_probs=158.4
Q ss_pred cccceEEEEeeCCC-eeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 4 LSPVHKHGLKADNG-LAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 4 ~~~v~~~~~s~~~~-~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.....+++|+|+|+ ++.++ ++.|..|+.+++ ...+..+. ..+.+++++| +++++++...++.|.+||
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~-------~~~~~l~~~~-dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS-------HHQNGHCLNK-QGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSC-------SSEEEEEECT-TCCEEEEETTTTEEEEEC
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCC-------CCcceeeECC-CCcEEEEecCCCeEEEEc
Confidence 34567899999999 44444 899999999876 33332221 2258899999 888888877778999999
Q ss_pred CCCCCCCceeEEecc----cccceeEEEEEecCCCEEEEE----ec-------------CCcEEEEEeecCceeeeeecC
Q psy6213 81 LGQISRSKQERVFND----HKRTVNKVSFHYVESNWLISG----SQ-------------DGTMRLFDIRCQESTKIFHSN 139 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~l~~~----~~-------------d~~i~i~d~~~~~~~~~~~~~ 139 (330)
..+ ++....... ....+..++++| +++++++. +. .+.|..++.. ++ ...+..+
T Consensus 97 ~~~---g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~ 170 (296)
T 3e5z_A 97 EPG---GEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRD 170 (296)
T ss_dssp STT---CCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECC
T ss_pred CCC---CcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecC
Confidence 866 333222221 123467899998 88888873 21 2355555544 33 3444455
Q ss_pred CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc---eeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC
Q psy6213 140 TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC---FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK 216 (330)
Q Consensus 140 ~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 216 (330)
......++|+|+++. +++.+.++.|++||+...+.. ...+..+...+..++++++|++.++. ++.|.+||.. +
T Consensus 171 ~~~~~gi~~s~dg~~-lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g 246 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNL-LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G 246 (296)
T ss_dssp CSSEEEEEECTTSCE-EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S
T ss_pred CCCCccEEECCCCCE-EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C
Confidence 667889999999995 577777899999998732332 22333355667889999999866665 7899999987 4
Q ss_pred ccccceeccccceEEEEE-cCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 217 PSLEYSINTIASVSRIKW-RPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 217 ~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
+.......+.. +.+++| .|+++.|+++. .+.+.-++..+..
T Consensus 247 ~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t----~~~l~~~~~~~~~ 288 (296)
T 3e5z_A 247 DELGRVLTPQT-TSNLCFGGPEGRTLYMTV----STEFWSIETNVRG 288 (296)
T ss_dssp CEEEEEECSSC-CCEEEEESTTSCEEEEEE----TTEEEEEECSCCB
T ss_pred CEEEEEECCCC-ceeEEEECCCCCEEEEEc----CCeEEEEEccccc
Confidence 34333333344 889999 68988766654 4556666666554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-16 Score=130.22 Aligned_cols=232 Identities=5% Similarity=0.005 Sum_probs=149.8
Q ss_pred cceEEEEeeCCCeeecC--C---Ce--EEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC-----
Q psy6213 6 PVHKHGLKADNGLAQPS--R---NV--FKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN----- 73 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g--d---~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----- 73 (330)
.+..++|+|||++++.. + +. |.+|++.+++.......+ . +..++|+| +++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--------~-~~~~~wsp-dg~~l~~~~~~~~~~~ 129 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK--------N-IRSLEWNE-DSRKLLIVGFKRREDE 129 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES--------E-EEEEEECT-TSSEEEEEEECCCC--
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC--------C-ccceeECC-CCCEEEEEEccCCCcC
Confidence 46789999999984443 2 44 777788777654433221 1 48899999 88888877632
Q ss_pred ----------------------CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC-------cEEE
Q psy6213 74 ----------------------GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG-------TMRL 124 (330)
Q Consensus 74 ----------------------g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~-------~i~i 124 (330)
..|.+||+.+ ++....+.. . .+..+.|+| ++ +++++..++ ...+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~---~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l 202 (347)
T 2gop_A 130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES---EEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDI 202 (347)
T ss_dssp -------CCCC---------CEEEEEEEETTT---TEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEE
T ss_pred CcEEEcccceeecCcccccCccceEEEEECCC---CeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccE
Confidence 5688999876 444233433 3 788999998 67 777776542 4455
Q ss_pred EEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecC-------CcEEEEecCCCccceeeeccCCCCeEE-EEEcCCC
Q psy6213 125 FDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN-------GTIQQWDVRRPEKCFYQFTAHSGPIFA-CDWHPEH 196 (330)
Q Consensus 125 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~i~~-~~~~~~~ 196 (330)
|.+.+++. ..+..+ ..+..+ +|+|+++++.+..+ ..|.+|| + ++.......+...+.. +.|+ ++
T Consensus 203 ~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg 274 (347)
T 2gop_A 203 YIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-GK 274 (347)
T ss_dssp EEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEEEEET-TE
T ss_pred EEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcccCCccEEc-Cc
Confidence 55554543 333333 445544 99999644444332 4688888 3 4444444556677886 8999 88
Q ss_pred CEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeE-EEEEccCCCccceEeecCCC
Q psy6213 197 AWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSV-NVWDIRRPYIPLASFTEHKD 273 (330)
Q Consensus 197 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i-~i~d~~~~~~~~~~~~~~~~ 273 (330)
++++++.++.+++| +.++ ...........+..++|+| ..+++..+ ++.. .+|.+. ++ ...+..|..
T Consensus 275 -~~~~~~~~~~~~l~-~~~g-~~~~~~~~~~~v~~~~~s~--~~~~~~~~---~~~~~~l~~~~-g~--~~~lt~~n~ 341 (347)
T 2gop_A 275 -VYFTLFEEGSVNLY-IWDG-EIKPIAKGRHWIMGFDVDE--IVVYLKET---ATRLRELFTWD-GE--EKQLTDYND 341 (347)
T ss_dssp -EEEEEEETTEEEEE-EESS-SEEEEECSSSEEEEEEESS--SEEEEEEC---SSSCCEEEEES-SS--EEECCCTTS
T ss_pred -EEEEEecCCcEEEE-EcCC-ceEEEecCCCeEEeeeeeC--cEEEEEcC---CCChHHheEeC-Cc--EEEeccccH
Confidence 88999999999999 8744 3334444567899999999 44344443 4443 666665 33 344555543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-16 Score=143.73 Aligned_cols=275 Identities=9% Similarity=-0.006 Sum_probs=170.4
Q ss_pred EeeCCCeeecC--CC---eEEEEE--cCCcceeeeeceeeccccccccceeeeeecccCCcEEE-----EEcCCCcEEEE
Q psy6213 12 LKADNGLAQPS--RN---VFKIFL--IKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIA-----TGATNGAVVVW 79 (330)
Q Consensus 12 ~s~~~~~~~~g--d~---~i~iw~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-----~~~~dg~i~iw 79 (330)
.+|+|++++.. ++ .-.+|- ...++....+.... ........+..++||| ++++|| .|+.+..|++|
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~-~a~~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNG-WSKDGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGG-SSSSSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHH-hccCCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEE
Confidence 35889884333 22 344454 43444322222111 1111234578999999 999888 34445689999
Q ss_pred ECCCCCCCceeEEecccccce--eEEEEEecCCCEEEEEecCCc-------------EEEEEeecCce--eeee--ecCC
Q psy6213 80 NLGQISRSKQERVFNDHKRTV--NKVSFHYVESNWLISGSQDGT-------------MRLFDIRCQES--TKIF--HSNT 140 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i--~~i~~~~~~~~~l~~~~~d~~-------------i~i~d~~~~~~--~~~~--~~~~ 140 (330)
|+.+ ++... ..+...+ ..++|+| +++.|+.++.|.. |++|++.+++. ...+ ..+.
T Consensus 153 dl~t---g~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~ 226 (695)
T 2bkl_A 153 DVDS---GEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP 226 (695)
T ss_dssp ETTT---CCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred ECCC---CCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence 9988 33320 1111222 6899998 8888998888765 99999987763 2223 2344
Q ss_pred CCeEEEEEcCCCCcEEEEEecC-C--cEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe---cCCcEEEEeCC
Q psy6213 141 ESVRDVEFNPHSPYAFASVSEN-G--TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS---RDKTIKVWDLS 214 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~ 214 (330)
..+..+.|+|+|++++++...+ + .|+++|..+ + ....+..+...+....+ ++|.+++.+. .++.|.+||+.
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~ 303 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-K-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPA 303 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-S-SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTT
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-C-ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCC
Confidence 5788999999999755554443 2 566676543 2 34455555666666666 5666444433 25789999998
Q ss_pred CCcc--ccceecc--ccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc-CCCccceEeecC-CCCeEEEEEecCCCEEE
Q psy6213 215 IKPS--LEYSINT--IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR-RPYIPLASFTEH-KDVVSGLAWRGDPQLFI 288 (330)
Q Consensus 215 ~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~ 288 (330)
++.. ......+ ...+..++|+ ++. ++++.. .++..++|.+. .+.. ...+..+ .+.+..++++|++..++
T Consensus 304 ~~~~~~~~~l~~~~~~~~l~~~~~~-~~~-lv~~~~--~dg~~~l~~~~~~g~~-~~~l~~~~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 304 KPARASWKEIVPEDSSASLLSVSIV-GGH-LSLEYL--KDATSEVRVATLKGKP-VRTVQLPGVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp BCSGGGCEEEECCCSSCEEEEEEEE-TTE-EEEEEE--ETTEEEEEEEETTCCE-EEECCCSSSSEECCCBSCTTCSEEE
T ss_pred CCCccCCeEEecCCCCCeEEEEEEE-CCE-EEEEEE--ECCEEEEEEEeCCCCe-eEEecCCCCeEEEEeecCCCCCEEE
Confidence 7642 1233332 4467888888 444 566666 68888888665 2333 4445544 56788889999998777
Q ss_pred Ee----ecCCeEeeeecc
Q psy6213 289 AS----SRVSIIPRAKNI 302 (330)
Q Consensus 289 s~----~~dg~i~iw~~~ 302 (330)
.. ...+.|++|+..
T Consensus 379 ~~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 379 YVFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp EEEEETTEEEEEEEEETT
T ss_pred EEEcCCCCCCEEEEEECC
Confidence 33 345789998753
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-15 Score=124.78 Aligned_cols=249 Identities=7% Similarity=-0.030 Sum_probs=171.1
Q ss_pred ceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 7 VHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
...+.+.. +++ ++.. ++.|.+||.++++....+.. . ..+..+++++ ++..+++...++.|.+||..+
T Consensus 46 ~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~--~------~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t- 114 (328)
T 3dsm_A 46 AQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITG--F------TSPRYIHFLS-DEKAYVTQIWDYRIFIINPKT- 114 (328)
T ss_dssp EEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEEC--C------SSEEEEEEEE-TTEEEEEEBSCSEEEEEETTT-
T ss_pred ceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCC--C------CCCcEEEEeC-CCeEEEEECCCCeEEEEECCC-
Confidence 46677743 444 5555 89999999999887766521 1 1247899988 775545544789999999987
Q ss_pred CCCceeEEecccc-----cceeEEEEEecCCCEEEEEe-cCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 85 SRSKQERVFNDHK-----RTVNKVSFHYVESNWLISGS-QDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 85 ~~~~~~~~~~~~~-----~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
.+....+.... .....+++ . ++.++++.. .++.|.++|+.+++.+..+... .....++++|+++ ++++
T Consensus 115 --~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~-l~v~ 188 (328)
T 3dsm_A 115 --YEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNK-MWTI 188 (328)
T ss_dssp --TEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSE-EEEE
T ss_pred --CeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCC-EEEE
Confidence 55554444322 14566777 3 555555544 4889999999999888777643 3457889999997 5665
Q ss_pred EecC----------CcEEEEecCCCccceeeeccC-CCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccce-ecc-
Q psy6213 159 VSEN----------GTIQQWDVRRPEKCFYQFTAH-SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYS-INT- 225 (330)
Q Consensus 159 ~~~d----------g~i~i~d~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~- 225 (330)
+..+ +.|.++|..+ .+....+... ......++++|+++.|+++.. .|.+||..+++..... ...
T Consensus 189 ~~~~~~~~~~~~~~~~v~~id~~t-~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~ 265 (328)
T 3dsm_A 189 TDGGYEGSPYGYEAPSLYRIDAET-FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR 265 (328)
T ss_dssp BCCBCTTCSSCBCCCEEEEEETTT-TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC
T ss_pred ECCCccCCccccCCceEEEEECCC-CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC
Confidence 5544 7899999987 4444444322 246889999999998888765 8999999887543211 121
Q ss_pred ccceEEEEEcCCCCeEEEEe----ecccCCeEEEEEccCCCccceEeecCCCCeEEEEE
Q psy6213 226 IASVSRIKWRPQRKFHLASC----SLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAW 280 (330)
Q Consensus 226 ~~~v~~~~~~~~~~~l~~~~----~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 280 (330)
......++++|++..++++. . .++.|.+||.. ++. +..+.. ......++|
T Consensus 266 ~~~p~gi~vdp~~g~lyva~~~~y~--~~~~V~v~d~~-g~~-~~~i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 266 DTKYYGLTVNPNNGEVYVADAIDYQ--QQGIVYRYSPQ-GKL-IDEFYV-GIIPGAFCW 319 (328)
T ss_dssp SSCEEEEEECTTTCCEEEEECTTSS--SEEEEEEECTT-CCE-EEEEEE-EESEEEEEE
T ss_pred CCceEEEEEcCCCCeEEEEcccccc--cCCEEEEECCC-CCE-EEEEEe-ccCcceEEE
Confidence 46788999999666667776 4 58999999998 654 555542 233455555
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-15 Score=121.22 Aligned_cols=213 Identities=9% Similarity=0.029 Sum_probs=160.1
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccc-cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCC-
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHK-RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNT- 140 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~- 140 (330)
.+++|++++.++.|.+||.++ ++.+..+..+. ..+.++.+.| ++++++ +.++.|+.||. +++.+..+..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t---G~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~ 76 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT---KEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAG 76 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT---TEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTT
T ss_pred CCcEEEeeCCCCEEEEEECCC---CeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCC
Confidence 478999999999999999977 77777777665 4788999998 888888 34778999999 799888888643
Q ss_pred CCeEEEEEcCCCCcEEEEEec-CCcEEEEecCCCccceeeec------cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeC
Q psy6213 141 ESVRDVEFNPHSPYAFASVSE-NGTIQQWDVRRPEKCFYQFT------AHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 213 (330)
..+.++.+.++++ ++++.+. ++.+..+|.. ++.+..+. .+......+++.++|+++++...++.|..||.
T Consensus 77 ~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~ 153 (276)
T 3no2_A 77 CEMQTARILPDGN-ALVAWCGHPSTILEVNMK--GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP 153 (276)
T ss_dssp CEEEEEEECTTSC-EEEEEESTTEEEEEECTT--SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT
T ss_pred ccccccEECCCCC-EEEEecCCCCEEEEEeCC--CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC
Confidence 4788999999998 5666665 6777777753 44444433 12234556788999999999999999999998
Q ss_pred CCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCC------CCeEEEEEecCCCEE
Q psy6213 214 SIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK------DVVSGLAWRGDPQLF 287 (330)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l 287 (330)
. ++.+..... ...+..+...+++..+++.. .++.|..+|..+++. +-.+..+. ..+.+++..++|+++
T Consensus 154 ~-G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~---~~~~v~~~d~~tG~~-~w~~~~~~~~~~~l~~~~~~~~~~~G~i~ 227 (276)
T 3no2_A 154 N-GQLLNSVKL-SGTPFSSAFLDNGDCLVACG---DAHCFVQLNLESNRI-VRRVNANDIEGVQLFFVAQLFPLQNGGLY 227 (276)
T ss_dssp T-SCEEEEEEC-SSCCCEEEECTTSCEEEECB---TTSEEEEECTTTCCE-EEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred C-CCEEEEEEC-CCCccceeEcCCCCEEEEeC---CCCeEEEEeCcCCcE-EEEecCCCCCCccccccccceEcCCCCEE
Confidence 8 645443332 34566678889999755554 477999999998876 55554332 237888889999988
Q ss_pred EEee
Q psy6213 288 IASS 291 (330)
Q Consensus 288 ~s~~ 291 (330)
++..
T Consensus 228 v~~~ 231 (276)
T 3no2_A 228 ICNW 231 (276)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8874
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-14 Score=117.86 Aligned_cols=235 Identities=8% Similarity=-0.007 Sum_probs=165.3
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
+.++++.+ +++++++...++.|..||... .............+.++++.+ ++.++++...++.|..||.. ++.
T Consensus 17 ~~~i~~d~-~g~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~- 89 (299)
T 2z2n_A 17 PYGITVSD-KGKVWITQHKANMISCINLDG---KITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK-GII- 89 (299)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTTC---CEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE-
T ss_pred ccceEECC-CCCEEEEecCCCcEEEEcCCC---CeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-CcE-
Confidence 58899998 888777776678999999762 212122223456788999997 77877777768889999976 332
Q ss_pred eeee--cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 134 KIFH--SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 134 ~~~~--~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
..+. .....+..+++.+++. ++++...++.|..||. ++.............+..+++.++|+++++...++.|..|
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 167 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRI 167 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred EEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEE
Confidence 2232 2345789999999887 6776667889999998 4232222223345678999999999888777777899999
Q ss_pred eCCCCccccc-eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEe
Q psy6213 212 DLSIKPSLEY-SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIAS 290 (330)
Q Consensus 212 d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 290 (330)
|. +++.... .......+..+++++++.. +++.. .++.|..||. ++.........+...+.+++++++|++.++.
T Consensus 168 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 168 TE-SGDITEFKIPTPASGPVGITKGNDDAL-WFVEI--IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSE-EEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred cC-CCcEEEeeCCCCCCcceeEEECCCCCE-EEEcc--CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence 98 5433222 1123456889999999985 55544 4789999999 5543222233345678999999999977776
Q ss_pred ecCCeEeeeecc
Q psy6213 291 SRVSIIPRAKNI 302 (330)
Q Consensus 291 ~~dg~i~iw~~~ 302 (330)
..++.|..|+..
T Consensus 243 ~~~~~i~~~d~~ 254 (299)
T 2z2n_A 243 WGANKIGRLTSN 254 (299)
T ss_dssp TTTTEEEEEETT
T ss_pred cCCceEEEECCC
Confidence 678889999864
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-15 Score=120.55 Aligned_cols=243 Identities=10% Similarity=0.100 Sum_probs=162.5
Q ss_pred ccceEEEEeeCCCeeec--------C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccC-CcEEEEEcCCC
Q psy6213 5 SPVHKHGLKADNGLAQP--------S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE-ENHIATGATNG 74 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~--------g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg 74 (330)
....+++|+++|.++++ . ++.|.+|+..+++...... . ........+.++++++ + ++++++.. .+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~--~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-P--EVNGYGGIPAGCQCDR-DANQLFVADM-RL 92 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-C--EETTEECCEEEEEECS-SSSEEEEEET-TT
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-c--ccCCCCCCCceEEEec-CCCcEEEEEC-CC
Confidence 34678999999998555 4 8999999988877543221 0 0001112358899998 6 66555544 44
Q ss_pred cEEEEECCCCCCCceeEE-ec----ccccceeEEEEEecCCCEEEEEecC---------------CcEEEEEeecCceee
Q psy6213 75 AVVVWNLGQISRSKQERV-FN----DHKRTVNKVSFHYVESNWLISGSQD---------------GTMRLFDIRCQESTK 134 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~-~~----~~~~~i~~i~~~~~~~~~l~~~~~d---------------~~i~i~d~~~~~~~~ 134 (330)
.|.+||.+ . +.... .. .....+.++++.+ +++++++...+ +.|..||.. ++...
T Consensus 93 ~l~~~d~~-g---~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 93 GLLVVQTD-G---TFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp EEEEEETT-S---CEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred CEEEEeCC-C---CEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 78889876 2 12111 11 1124588999998 77877776554 467777755 44333
Q ss_pred eeecCCCCeEEEEEc----CCCCcEEEEEecCCcEEEEecCCCcc-----ceeeeccCC-CCeEEEEEcCCCCEEEEEec
Q psy6213 135 IFHSNTESVRDVEFN----PHSPYAFASVSENGTIQQWDVRRPEK-----CFYQFTAHS-GPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 135 ~~~~~~~~v~~~~~~----~~~~~~~~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~ 204 (330)
.. .+......++++ |+++.++++...++.|.+||+...+. ....+..+. ..+..++++++|+++++...
T Consensus 167 ~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 167 VD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp EE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred ec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 22 233456889999 99875566666788999999862122 222333333 56788999999998888878
Q ss_pred CCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 205 DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 205 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
++.|.+||..+++.......+...+.+++|+|+++.|+++.. .++.|..|++...
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~--~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH--ENNAVWKFEWQRN 300 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET--TTTEEEEEECSSC
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeC--CCCeEEEEeCCCC
Confidence 899999998866444433334467899999999997676665 5789999998754
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-14 Score=117.17 Aligned_cols=268 Identities=10% Similarity=-0.060 Sum_probs=177.5
Q ss_pred EeeCCCeeecCC----C---eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc----------CCC
Q psy6213 12 LKADNGLAQPSR----N---VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA----------TNG 74 (330)
Q Consensus 12 ~s~~~~~~~~gd----~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg 74 (330)
..|+++++...+ . .|.++|..+++....+.. + .. ..++++| +++.++++. .++
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~--g------~~-p~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--G------FL-PNPVAAH-SGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC--C------CC-CCeEECC-CCCEEEEEeccccccccCCCCC
Confidence 447777632222 1 889999998886644332 2 11 3799999 999888875 357
Q ss_pred cEEEEECCCCCCCceeEEeccc-------ccceeEEEEEecCCCEEEEEec--CCcEEEEEeecCceeee-eecCCCCeE
Q psy6213 75 AVVVWNLGQISRSKQERVFNDH-------KRTVNKVSFHYVESNWLISGSQ--DGTMRLFDIRCQESTKI-FHSNTESVR 144 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~-~~~~~~~v~ 144 (330)
.|.+||..+ .+....+... ......+.|+| ++++|+++.. ++.|.++| .+++.+.. +....
T Consensus 98 ~v~viD~~t---~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---- 168 (373)
T 2mad_H 98 YVEVFDPVT---FLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---- 168 (373)
T ss_pred eEEEEECCC---CcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----
Confidence 899999987 4444443321 12345889999 8888888764 57899999 99988777 54322
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec-----cCCCCe-EEEEEcCCCCEEEEEecCCcEEEEeCCCCcc
Q psy6213 145 DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT-----AHSGPI-FACDWHPEHAWLATASRDKTIKVWDLSIKPS 218 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 218 (330)
++.+.|+++..+++.+.||.+.++|. + .+...... ....++ ....+.+++..++..+.++.+.+.|+.....
T Consensus 169 ~~~~~~~~~~~~~~~~~dg~~~~vd~-~-g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~ 246 (373)
T 2mad_H 169 CYHIHPGAPSTFYLLCAQGGLAKTDH-A-GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA 246 (373)
T ss_pred eEEEEeCCCceEEEEcCCCCEEEEEC-C-CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc
Confidence 35566777767888889999999999 6 33332111 112221 2345666665555555778999999875422
Q ss_pred cc-ceec-----------cccceEEEEEcCCCCeEEEEeecc-------cCCeEEEEEccCCCccceEeecCCCCeEEEE
Q psy6213 219 LE-YSIN-----------TIASVSRIKWRPQRKFHLASCSLV-------VDSSVNVWDIRRPYIPLASFTEHKDVVSGLA 279 (330)
Q Consensus 219 ~~-~~~~-----------~~~~v~~~~~~~~~~~l~~~~~~~-------~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 279 (330)
.. .... .......+.++|+++.++++.... ..+.|.++|+.+.+. +..+.. .....+++
T Consensus 247 ~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v-v~~i~~-g~~p~~i~ 324 (373)
T 2mad_H 247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT-SSQISL-GHDVDAIS 324 (373)
T ss_pred eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE-EEEEEC-CCCcCeEE
Confidence 11 1110 122344578999999877765310 136899999998875 555543 34689999
Q ss_pred EecCCC-EEEEee-cCCeEeeeecc
Q psy6213 280 WRGDPQ-LFIASS-RVSIIPRAKNI 302 (330)
Q Consensus 280 ~~~~~~-~l~s~~-~dg~i~iw~~~ 302 (330)
|+|||+ .++++. .++.|.+++..
T Consensus 325 ~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 325 VAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred ECCCCCeEEEEEcCCCCeEEEEECC
Confidence 999999 788777 58999999754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-15 Score=134.55 Aligned_cols=238 Identities=13% Similarity=0.042 Sum_probs=154.1
Q ss_pred cceeeeeecccCCcEEEEEcCC-----CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCc-----
Q psy6213 52 FSCNDVAWSCIEENHIATGATN-----GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGT----- 121 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~----- 121 (330)
..+..++||| ++++||.+..+ ..|++||+.+ ++.... ..+...+..++|+| + +.|+.++.++.
T Consensus 163 ~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~t---g~~~~~-~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 163 TALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVAD---GKPLAD-ELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTT---CCEEEE-EEEEEESCCCEEST-T-SEEEEEECCCC-----
T ss_pred EEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCC---CCCCCc-cCCCceeccEEEEC-C-CEEEEEEecCcccccc
Confidence 3468899999 99988877543 3599999988 443332 11222346789999 6 77877776554
Q ss_pred ---------EEEEEeecCce--eeeeec--CCCCeEEEEEcCCCCcEEEEEec----CCcEEEEecCCCccc-eeeeccC
Q psy6213 122 ---------MRLFDIRCQES--TKIFHS--NTESVRDVEFNPHSPYAFASVSE----NGTIQQWDVRRPEKC-FYQFTAH 183 (330)
Q Consensus 122 ---------i~i~d~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~~~~~-~~~~~~~ 183 (330)
|++|++.+++. ...+.. +...+..+.|+|+|+++++++.. ...|++||+.++... ...+..+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence 88999876653 223332 22358899999999965554432 347999999874222 4455555
Q ss_pred CCCeEEEEEcCCCCEEEEEecC----CcEEEEeCCCCc-ccccee-ccccceEEEEEcCCCCeEEEEeecccCCeEEEEE
Q psy6213 184 SGPIFACDWHPEHAWLATASRD----KTIKVWDLSIKP-SLEYSI-NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257 (330)
Q Consensus 184 ~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d 257 (330)
........ +|+|+.|+..+.+ +.|.+||+.++. ...... .+...+..+.++ +..++++.. .++..++|.
T Consensus 316 ~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~--~dg~~~l~~ 390 (741)
T 1yr2_A 316 LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYI--HDAKSQVLA 390 (741)
T ss_dssp SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEE--ETTEEEEEE
T ss_pred CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEE--ECCEEEEEE
Confidence 55555553 4888888887754 459999988742 222222 233456677777 344666666 588877776
Q ss_pred cc-CCCccceEeec-CCCCeEEEEEecCCCEEEEe----ecCCeEeeeecc
Q psy6213 258 IR-RPYIPLASFTE-HKDVVSGLAWRGDPQLFIAS----SRVSIIPRAKNI 302 (330)
Q Consensus 258 ~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~----~~dg~i~iw~~~ 302 (330)
+. .+.. ...+.. +.+.+..++++|+++.|+.. ...+.|++|+..
T Consensus 391 ~~~~g~~-~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 391 FDLDGKP-AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp EETTSCE-EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred EeCCCCc-eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 55 2333 444543 35678899999998866633 334788888753
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-14 Score=132.11 Aligned_cols=244 Identities=14% Similarity=0.143 Sum_probs=158.2
Q ss_pred ccceEEEEeeCCCeeecC---C----CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCc--
Q psy6213 5 SPVHKHGLKADNGLAQPS---R----NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA-- 75 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g---d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-- 75 (330)
..+..++|||||++++.+ + ..|++||+++++.... ..+.. .+..++|+| + +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~-------~~~~~~wsp-D-~~l~~~~~~~~~~ 232 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWV-------KFSGLAWLG-N-DALLYSRFAEPKE 232 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEE-------ESCCCEEST-T-SEEEEEECCCC--
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCc-------eeccEEEEC-C-CEEEEEEecCccc
Confidence 367889999999995544 2 3699999999886542 11111 125789999 7 87777766543
Q ss_pred ------------EEEEECCCCCCCceeEEec--ccccceeEEEEEecCCCEEEEEecCC-----cEEEEEeecC--ceee
Q psy6213 76 ------------VVVWNLGQISRSKQERVFN--DHKRTVNKVSFHYVESNWLISGSQDG-----TMRLFDIRCQ--ESTK 134 (330)
Q Consensus 76 ------------i~iw~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~d~-----~i~i~d~~~~--~~~~ 134 (330)
|++|++.+... .....+. .+...+..+.|+| ++++|+..+.++ .|++||+.++ +...
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQS-ADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGG-GCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCch-hCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 88999876321 1122232 2334588999998 888888776544 8999999877 3144
Q ss_pred eeecCCCCeEEEEEcCCCCcEEEEEec---CCcEEEEecCCCc-cceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEE
Q psy6213 135 IFHSNTESVRDVEFNPHSPYAFASVSE---NGTIQQWDVRRPE-KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210 (330)
Q Consensus 135 ~~~~~~~~v~~~~~~~~~~~~~~~~~~---dg~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 210 (330)
.+..+........ +|+++.+++.... ++.|.+||+.++. .....+..+...+..+.+. ++.++++...|+..++
T Consensus 311 ~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l 388 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQV 388 (741)
T ss_dssp EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEE
T ss_pred EecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence 4544444455443 4888854444432 3459999987642 3333444455556678887 6677888888988777
Q ss_pred EeCC-CCccccce-eccccceEEEEEcCCCCeEEEEee-cccCCeEEEEEccCCC
Q psy6213 211 WDLS-IKPSLEYS-INTIASVSRIKWRPQRKFHLASCS-LVVDSSVNVWDIRRPY 262 (330)
Q Consensus 211 ~d~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~i~i~d~~~~~ 262 (330)
|.+. .+...... .+....+..+.++|+++.++.+.+ ....+.|++||+.+++
T Consensus 389 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 389 LAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7554 23222222 223567889999999886655443 1135789999998764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-14 Score=115.76 Aligned_cols=234 Identities=9% Similarity=0.069 Sum_probs=156.0
Q ss_pred eeeeeecccCCcEEEE-------EcCCCcEEEEECCCCCCCceeEEec----ccccceeEEEEEecC-CCEEEEEecCCc
Q psy6213 54 CNDVAWSCIEENHIAT-------GATNGAVVVWNLGQISRSKQERVFN----DHKRTVNKVSFHYVE-SNWLISGSQDGT 121 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~-~~~l~~~~~d~~ 121 (330)
..+++|++ ++.++++ +..++.|..||..+ .+...... ++...+.++++++ + ++++++. ..+.
T Consensus 20 ~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~-~~~~ 93 (314)
T 1pjx_A 20 AEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKT---GKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVAD-MRLG 93 (314)
T ss_dssp CEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTT---CCEEEEECCEETTEECCEEEEEECS-SSSEEEEEE-TTTE
T ss_pred ccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCC---CcEEEEEecccCCCCCCCceEEEec-CCCcEEEEE-CCCC
Confidence 37899998 8887777 56788999999766 33322111 2456788999997 5 5545544 4457
Q ss_pred EEEEEeecCceeee-eec----CCCCeEEEEEcCCCCcEEEEEecC---------------CcEEEEecCCCccceeeec
Q psy6213 122 MRLFDIRCQESTKI-FHS----NTESVRDVEFNPHSPYAFASVSEN---------------GTIQQWDVRRPEKCFYQFT 181 (330)
Q Consensus 122 i~i~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~~~~~~~~d---------------g~i~i~d~~~~~~~~~~~~ 181 (330)
|.+||.+ ++.... ... ....+.++++++++. ++++...+ +.|..+|.. ++. ..+.
T Consensus 94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~-~~~~ 168 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQM-IQVD 168 (314)
T ss_dssp EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCE-EEEE
T ss_pred EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC--CCE-EEec
Confidence 9999987 654433 221 123578999999997 56665544 567777765 222 2222
Q ss_pred cCCCCeEEEEEc----CCCCEEEEE-ecCCcEEEEeCC-CCcc----cccee-ccc-cceEEEEEcCCCCeEEEEeeccc
Q psy6213 182 AHSGPIFACDWH----PEHAWLATA-SRDKTIKVWDLS-IKPS----LEYSI-NTI-ASVSRIKWRPQRKFHLASCSLVV 249 (330)
Q Consensus 182 ~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~----~~~~~-~~~-~~v~~~~~~~~~~~l~~~~~~~~ 249 (330)
.+......++++ |+++.++.+ ..++.|.+||.. .++. ..... .+. ..+..++++++|.. +++.. .
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l-~v~~~--~ 245 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL-LVANW--G 245 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE-EEEEE--T
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE-EEEEc--C
Confidence 334557889999 999765555 567899999976 3321 11111 112 56788999999985 44443 4
Q ss_pred CCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEE-EeecCCeEeeeecc
Q psy6213 250 DSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFI-ASSRVSIIPRAKNI 302 (330)
Q Consensus 250 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~iw~~~ 302 (330)
++.|.+||..+++. ...+..+...+.+++++|+++.|+ +...++.|..|+..
T Consensus 246 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 246 SSHIEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEcCCCCcE-eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 88999999886654 555666667899999999999554 44556788888654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-14 Score=119.37 Aligned_cols=233 Identities=8% Similarity=0.037 Sum_probs=158.7
Q ss_pred ccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCC--cEEEEE
Q psy6213 5 SPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG--AVVVWN 80 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iw~ 80 (330)
.....++|+|+|+++++. ++.|++||.+++........ . .. .. ++|+| +++.|+++..++ .|.+++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~-----~~-~~-ia~~~-~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--F-----KG-GK-PAVTK-DKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--C-----CB-CB-CEECT-TSSEEEEEBSSTTCEEEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--C-----CC-Cc-eeEec-CCCcEEEEecCCCceEEEEE
Confidence 457789999999985544 89999999988776544322 1 11 24 89999 888888887766 788888
Q ss_pred CCCCCCCceeEEe---cc-cccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeee----eecCCCCe--EEEEEcC
Q psy6213 81 LGQISRSKQERVF---ND-HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI----FHSNTESV--RDVEFNP 150 (330)
Q Consensus 81 ~~~~~~~~~~~~~---~~-~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~v--~~~~~~~ 150 (330)
.... .....+ .. ....+.+++++| ++..|+.+..++.|+.||..++..... ..+....- ..++|+|
T Consensus 201 ~~~~---~~~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 201 KASG---WAPTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp GGGT---TCEEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred cCCC---ceeEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 7652 222222 12 446678899998 444555577788999999987653322 11122222 3999999
Q ss_pred CCCcEEEEEecCCcEEEEecCCCccceeeeccC---------------CCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCC
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH---------------SGPIFACDWHPEHAWLATAS-RDKTIKVWDLS 214 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 214 (330)
++.+++++-..++.|+.|+.... ...+.++ -.....++++|+|+++++-. .++.|+.||+.
T Consensus 277 ~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 277 VDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp TTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 76657777777889999997642 2222222 23578999999999888877 88999999976
Q ss_pred CCccccceecc---------------ccceEEEEEcCCCCeEEEEeecccCCeEEEEEc
Q psy6213 215 IKPSLEYSINT---------------IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258 (330)
Q Consensus 215 ~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~ 258 (330)
++.. ...... ......+++++++. |+++.. .++.|+.+++
T Consensus 354 ~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-lyVad~--~n~~Ir~i~~ 408 (409)
T 3hrp_A 354 DGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-YWIAEA--WGKAIRKYAV 408 (409)
T ss_dssp TTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-EEEEES--TTCEEEEEEE
T ss_pred CCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-EEEEEC--CCCeEEEEEe
Confidence 6632 222221 24688999999976 455555 5888888775
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-14 Score=112.62 Aligned_cols=210 Identities=11% Similarity=0.079 Sum_probs=153.3
Q ss_pred CCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEe
Q psy6213 16 NGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVF 93 (330)
Q Consensus 16 ~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 93 (330)
+++ ++.+ ++.|.+||.++++.+-.+..+.. ..+.+++++| ++++++ +.++.|..||. + ++.+..+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~------~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~---G~~~W~~ 71 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG------WECNSVAATK-AGEILF--SYSKGAKMITR-D---GRELWNI 71 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTT------CCCCEEEECT-TSCEEE--ECBSEEEEECT-T---SCEEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc------CCCcCeEECC-CCCEEE--eCCCCEEEECC-C---CCEEEEE
Confidence 455 4444 99999999999998776655421 1247889999 898888 34678999998 5 5666666
Q ss_pred ccc-ccceeEEEEEecCCCEEEEEec-CCcEEEEEeecCceeeeeecC------CCCeEEEEEcCCCCcEEEEEecCCcE
Q psy6213 94 NDH-KRTVNKVSFHYVESNWLISGSQ-DGTMRLFDIRCQESTKIFHSN------TESVRDVEFNPHSPYAFASVSENGTI 165 (330)
Q Consensus 94 ~~~-~~~i~~i~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~dg~i 165 (330)
..+ ...+.++.+.| +++++++.+. ++.+..+|. +++.+..+... ......+++.++++ ++++...++.|
T Consensus 72 ~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v 148 (276)
T 3no2_A 72 AAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEV 148 (276)
T ss_dssp ECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEE
T ss_pred cCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEE
Confidence 654 35788889998 8899988877 778888876 57766665421 12345667889998 68888889999
Q ss_pred EEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecc------ccceEEEEEcCCCC
Q psy6213 166 QQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT------IASVSRIKWRPQRK 239 (330)
Q Consensus 166 ~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~ 239 (330)
..||.+ ++.+..+... ..+.++...++|+.++++..++.|..+|..+++.+...... ...+..+...++|.
T Consensus 149 ~~~d~~--G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 149 REIAPN--GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp EEECTT--SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred EEECCC--CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence 999987 4556666543 45667888899999999988889999999988664444322 12378888899998
Q ss_pred eEEEE
Q psy6213 240 FHLAS 244 (330)
Q Consensus 240 ~l~~~ 244 (330)
.+++.
T Consensus 226 i~v~~ 230 (276)
T 3no2_A 226 LYICN 230 (276)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 64444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.69 E-value=7e-14 Score=117.97 Aligned_cols=232 Identities=10% Similarity=0.105 Sum_probs=158.4
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC--cEEEEEeecCc
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG--TMRLFDIRCQE 131 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~ 131 (330)
...++|++ +++++++...++.|+.||..+ ......... ..... ++|+| +++.|+++..++ .|..++...+.
T Consensus 133 P~~la~d~-~g~lyv~d~~~~~I~~id~~~---g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 133 MWGIAAVG-NNTVLAYQRDDPRVRLISVDD---NKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp EEEEEECS-TTEEEEEETTTTEEEEEETTT---TEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred ceEEEEeC-CCCEEEEecCCCcEEEEECCC---CEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCc
Confidence 58899998 888888877789999999976 343333333 23334 89998 788888887766 78888887665
Q ss_pred eeeee----ecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceee---eccCCCCe-E-EEEEcCC-CCEEEE
Q psy6213 132 STKIF----HSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ---FTAHSGPI-F-ACDWHPE-HAWLAT 201 (330)
Q Consensus 132 ~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~i-~-~~~~~~~-~~~l~~ 201 (330)
....+ ......+.+++++|++.+++ .+..++.|+.||..+....... ..++...- . .++|+|+ +.++++
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~ly-v~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLY-FVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEE-EECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEE-EEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 43333 21445678899999655444 4677889999999864321110 11222222 3 9999995 666666
Q ss_pred EecCCcEEEEeCCCCccccceecc---------------ccceEEEEEcCCCCeEEEEe-ecccCCeEEEEEccCCCccc
Q psy6213 202 ASRDKTIKVWDLSIKPSLEYSINT---------------IASVSRIKWRPQRKFHLASC-SLVVDSSVNVWDIRRPYIPL 265 (330)
Q Consensus 202 ~~~dg~i~i~d~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~-~~~~~~~i~i~d~~~~~~~~ 265 (330)
-..++.|+.|+.... . ...... ......++++|+|..+++-. . ++.|+.|++.++. +
T Consensus 285 d~~~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~---~~~I~~~~~~~G~--v 357 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK---GYCLRKLDILDGY--V 357 (409)
T ss_dssp ETTTTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT---TCEEEEEETTTTE--E
T ss_pred eCCCCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC---CCEEEEEECCCCE--E
Confidence 667889999997653 1 111111 23588999999998544433 3 7899999977664 3
Q ss_pred eEeecC---------------CCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 266 ASFTEH---------------KDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 266 ~~~~~~---------------~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
..+.++ -....++++++++.++++-..++.|+.+.
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 444443 24589999999988888888888888764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-13 Score=109.93 Aligned_cols=236 Identities=8% Similarity=-0.016 Sum_probs=163.4
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
+.++++.+ ++++.++...++.|.+|+... ......+......+..+++.+ +++++++...++.|..+|.. ++..
T Consensus 22 p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 22 PYGITSSE-DGKVWFTQHKANKISSLDQSG---RIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTTS---CEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cceeeECC-CCCEEEEcCCCCeEEEECCCC---ceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeE
Confidence 58899998 888888777788999999762 111122233346788999987 77777776667889999987 5443
Q ss_pred ee-eecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEe
Q psy6213 134 KI-FHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212 (330)
Q Consensus 134 ~~-~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 212 (330)
.. .......+..+++.+++. ++++...++.|..+|.. +......+......+..+++.+++++.++...++.|..||
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 21 222346789999999887 56666667889999987 2322222333456789999999999777666678899999
Q ss_pred CCCCcccccee-ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEee
Q psy6213 213 LSIKPSLEYSI-NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 213 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
. +++...... .....+..+++++++.. +++.. ..+.|.+||. ++.........+...+.+++++++|++.++..
T Consensus 174 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l-~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 248 (300)
T 2qc5_A 174 N-TGKLEEYPLPTNAAAPVGITSGNDGAL-WFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW 248 (300)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECTTSSE-EEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred C-CCcEEEeeCCCCCCCcceEEECCCCCE-EEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence 8 443322211 23456889999999975 55544 4778999998 44331222333456789999999999777766
Q ss_pred cCCeEeeeecc
Q psy6213 292 RVSIIPRAKNI 302 (330)
Q Consensus 292 ~dg~i~iw~~~ 302 (330)
.++.|..++..
T Consensus 249 ~~~~i~~~~~~ 259 (300)
T 2qc5_A 249 GANQIGRITND 259 (300)
T ss_dssp TTTEEEEECTT
T ss_pred CCCeEEEECCC
Confidence 67889988764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-13 Score=111.55 Aligned_cols=223 Identities=7% Similarity=0.017 Sum_probs=147.9
Q ss_pred eEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 8 HKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 8 ~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
-+..|+|++.. +.+. ++.|..||.++++.. .+.. ...+.+++++| +++++++ . ++.|.+||.++
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~--------~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~- 82 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTM--------DAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKE- 82 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEC--------SSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTT-
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeC--------CCceEEEEECC-CCCEEEE-E-CCeEEEEECCC-
Confidence 46789996554 5554 899999999886642 2211 12368999999 8885554 4 56799999876
Q ss_pred CCCceeEEecc----cccceeEEEEEecCCCEEEEEecC---------CcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 85 SRSKQERVFND----HKRTVNKVSFHYVESNWLISGSQD---------GTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 85 ~~~~~~~~~~~----~~~~i~~i~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
.+....... ....++.+++.| +++++++.... ..-.+|.+........+.........++|+|+
T Consensus 83 --g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 83 --QSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp --TEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred --CcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 332222111 124578899998 77766654322 23455555432222223333345688999999
Q ss_pred CCcEEEEEecCCcEEEEecC-CCcc-----ceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecc
Q psy6213 152 SPYAFASVSENGTIQQWDVR-RPEK-----CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT 225 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~-~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 225 (330)
++.++++.+.++.|.+||+. ..+. ....+..+.+....++++++|++.++....+.|..||..+++........
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 98766777778999999974 2122 12223334456789999999988887777888999999877555444444
Q ss_pred ccceEEEEEc-CCCCeEEEEee
Q psy6213 226 IASVSRIKWR-PQRKFHLASCS 246 (330)
Q Consensus 226 ~~~v~~~~~~-~~~~~l~~~~~ 246 (330)
...+++++|. |+++.|+++..
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCceEEEEeCCCCCEEEEEcC
Confidence 5679999998 88887777665
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-13 Score=110.40 Aligned_cols=224 Identities=9% Similarity=0.103 Sum_probs=149.5
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK 134 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 134 (330)
.+..|+|.++.++++...++.|..||..+ ... ..+ .....+.+++++| +++++++ . ++.|.+||.++++...
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~---~~~-~~~-~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFT---KQV-QRV-TMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTT---CCE-EEE-ECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCC---CcE-EEE-eCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 67899985566777777889999999876 222 222 2346789999998 7775544 4 5689999998776543
Q ss_pred eeec----CCCCeEEEEEcCCCCcEEEEEecC---------CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEE-
Q psy6213 135 IFHS----NTESVRDVEFNPHSPYAFASVSEN---------GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLA- 200 (330)
Q Consensus 135 ~~~~----~~~~v~~~~~~~~~~~~~~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~- 200 (330)
.... ....+..++++|+|+ ++++.... ..-.+|.+...+.. ..+.......+.++|+|+++.|+
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEE
Confidence 3322 123478899999998 45544221 22344444332322 22333445578999999998664
Q ss_pred EEecCCcEEEEeCC--CCccc----c-ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCC
Q psy6213 201 TASRDKTIKVWDLS--IKPSL----E-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKD 273 (330)
Q Consensus 201 ~~~~dg~i~i~d~~--~~~~~----~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 273 (330)
+.+.++.|.+||+. ++... . ........+..++++++|.. .++.. ..+.|..||..+++. +..+..+..
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l-wva~~--~~~~v~~~d~~tG~~-~~~i~~p~~ 241 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL-WVACY--NGGRVIRLDPVTGKR-LQTVKLPVD 241 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE-EEEEE--TTTEEEEECTTTCCE-EEEEECSSS
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE-EEEEc--CCCEEEEEcCCCceE-EEEEECCCC
Confidence 55567889999873 33211 1 11122356789999999975 55554 478999999987765 667776667
Q ss_pred CeEEEEEe-cCCCEEEEeec
Q psy6213 274 VVSGLAWR-GDPQLFIASSR 292 (330)
Q Consensus 274 ~v~~~~~~-~~~~~l~s~~~ 292 (330)
.+++++|. |+++.|+.++.
T Consensus 242 ~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp BEEEEEEESGGGCEEEEEEB
T ss_pred CceEEEEeCCCCCEEEEEcC
Confidence 89999998 88887766554
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-13 Score=112.85 Aligned_cols=272 Identities=10% Similarity=-0.006 Sum_probs=180.3
Q ss_pred EEEeeCCCe-eecC------CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc----------C
Q psy6213 10 HGLKADNGL-AQPS------RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA----------T 72 (330)
Q Consensus 10 ~~~s~~~~~-~~~g------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~ 72 (330)
....|+++. .++. ++.|.+.|..+++....+... .. .. ++++| ++++++++. .
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG--~~------P~-va~sp-DG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FL------PN-PVVAD-DGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SS------CE-EEECT-TSSCEEEEEEEEEETTEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC--CC------Cc-EEECC-CCCEEEEEcccccccccCCC
Confidence 445788888 3332 468999999998877655432 11 14 99999 888887765 3
Q ss_pred CCcEEEEECCCCCCCceeEEeccc-------ccceeEEEEEecCCCEEEEEec--CCcEEEEEeecCceeeeeecCCCCe
Q psy6213 73 NGAVVVWNLGQISRSKQERVFNDH-------KRTVNKVSFHYVESNWLISGSQ--DGTMRLFDIRCQESTKIFHSNTESV 143 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~~~~~~~~~-------~~~i~~i~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~v 143 (330)
++.|.+||..+ .+....+... ......+.++| ++++++++.. ++.|.++|+.+++.+.++....
T Consensus 108 ~~~VsviD~~t---~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--- 180 (386)
T 3sjl_D 108 TDYVEVFDPVT---LLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--- 180 (386)
T ss_dssp EEEEEEECTTT---CCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---
T ss_pred CCEEEEEECCC---CeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC---
Confidence 57899999988 5555555321 12456799998 8888887764 6899999999999988886432
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec----cCCCCeE-EEEEc-CCCCEEEEEecCCcEEEEeCCCCc
Q psy6213 144 RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT----AHSGPIF-ACDWH-PEHAWLATASRDKTIKVWDLSIKP 217 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~i~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~ 217 (330)
+....|.+...+++.+.||.+.+.++...++...... ....++. ...|. ++|++++ .+.+|.+.+.|..+..
T Consensus 181 -~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 181 -CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp -EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred -cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence 1223355554677888899999999876333322111 1112222 24664 5776555 5568999999997653
Q ss_pred c-ccceec-----------cccceEEEEEcCCCCeEEEEeecc-------cCCeEEEEEccCCCccceEeecCCCCeEEE
Q psy6213 218 S-LEYSIN-----------TIASVSRIKWRPQRKFHLASCSLV-------VDSSVNVWDIRRPYIPLASFTEHKDVVSGL 278 (330)
Q Consensus 218 ~-~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~~~-------~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~ 278 (330)
. ...... .......++++|+++.+++..... ..+.|.++|+.+.+. +..+.. ...++++
T Consensus 259 ~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv-~~~i~v-g~~~~~l 336 (386)
T 3sjl_D 259 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFEM-GHEIDSI 336 (386)
T ss_dssp CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEEE-EEEECEE
T ss_pred ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE-EEEEEC-CCCcceE
Confidence 2 111110 122344577899999877765310 125799999999886 444432 2368899
Q ss_pred EEecCCC-EEEEe-ecCCeEeeeecc
Q psy6213 279 AWRGDPQ-LFIAS-SRVSIIPRAKNI 302 (330)
Q Consensus 279 ~~~~~~~-~l~s~-~~dg~i~iw~~~ 302 (330)
+++||++ +|+++ ..++.|.+++..
T Consensus 337 avs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 337 NVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EECSSSSCEEEEEETTTTEEEEEETT
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECC
Confidence 9999997 66665 458999999754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=9.5e-14 Score=114.30 Aligned_cols=260 Identities=12% Similarity=0.057 Sum_probs=169.6
Q ss_pred EEEEeeCCCe-eecC-----------CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC--CC
Q psy6213 9 KHGLKADNGL-AQPS-----------RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT--NG 74 (330)
Q Consensus 9 ~~~~s~~~~~-~~~g-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg 74 (330)
.++++|||++ .++. ++.|.+||..+.+....+....+...........++|+| ++++++++.. ++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCC
Confidence 4999999998 3331 467999999998887776553211111111236799999 9998888764 68
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec-Cceeeeeec----CCCCeE-EEEE
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC-QESTKIFHS----NTESVR-DVEF 148 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~----~~~~v~-~~~~ 148 (330)
.|.++|+.+ .+.+..+.... . ....|.+.+.+++.+.||.+.+.++.+ ++....... ...++. ...|
T Consensus 161 ~VsVID~~t---~~vv~tI~v~g--~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~ 233 (386)
T 3sjl_D 161 AVGVVDLEG---KAFKRMLDVPD--C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY 233 (386)
T ss_dssp EEEEEETTT---TEEEEEEECCS--E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE
T ss_pred eEEEEECCC---CcEEEEEECCC--c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccccee
Confidence 899999998 66666664321 1 222344677788888899999999876 554221111 112222 2455
Q ss_pred c-CCCCcEEEEEecCCcEEEEecCCCcc-ceeeec----------cCCCCeEEEEEcCCCCEEEEEec----------CC
Q psy6213 149 N-PHSPYAFASVSENGTIQQWDVRRPEK-CFYQFT----------AHSGPIFACDWHPEHAWLATASR----------DK 206 (330)
Q Consensus 149 ~-~~~~~~~~~~~~dg~i~i~d~~~~~~-~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~----------dg 206 (330)
. ++|+ ++..+.+|.|++.|+..... ....+. -..+....++++|+++.++.... .+
T Consensus 234 ~~~dG~--~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~ 311 (386)
T 3sjl_D 234 SQKAGR--LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 311 (386)
T ss_dssp ETTTTE--EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred EcCCCc--EEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCC
Confidence 4 5664 33456689999999975321 122221 01234456788999888877653 24
Q ss_pred cEEEEeCCCCccccceeccccceEEEEEcCCCC-eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecC
Q psy6213 207 TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK-FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGD 283 (330)
Q Consensus 207 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 283 (330)
.|.++|+.+.+.+ .......++..+++++|++ .|+++.. .++.|.++|..+++. +.++..- +.-+.|.+++|
T Consensus 312 ~V~viD~~t~kv~-~~i~vg~~~~~lavs~D~~~~ly~tn~--~~~~VsViD~~t~k~-~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 312 FVVVLDAKTGERL-AKFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESGEE-LRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EEEEEETTTCCEE-EEEEEEEEECEEEECSSSSCEEEEEET--TTTEEEEEETTTCCE-EEEECCC-CSSCCEEEECC
T ss_pred EEEEEECCCCeEE-EEEECCCCcceEEECCCCCeEEEEEcC--CCCeEEEEECCCCcE-EEEecCC-CCCceeEECCc
Confidence 6999999998544 4444456888999999997 5555554 589999999999875 5555432 33455666665
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-12 Score=109.24 Aligned_cols=244 Identities=9% Similarity=-0.069 Sum_probs=159.4
Q ss_pred EEEEeeCCCe-eec----------C-CCeEEEEEcCCcceeeeecee-eccccccccceeeeeecccCCcEEEEEcC--C
Q psy6213 9 KHGLKADNGL-AQP----------S-RNVFKIFLIKDTEFVETHNLR-VGKNINLNFSCNDVAWSCIEENHIATGAT--N 73 (330)
Q Consensus 9 ~~~~s~~~~~-~~~----------g-d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d 73 (330)
.++++|||++ .++ . ++.|.+||..+.+........ ......... ...++|+| ++++|+++.. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~-p~~~~~sp-DG~~l~v~n~~~~ 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY-SWMNANTP-NNADLLFFQFAAG 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC-ccceEECC-CCCEEEEEecCCC
Confidence 7899999998 333 1 467999999987776655443 111100011 26799999 9999988864 4
Q ss_pred CcEEEEECCCCCCCceeEE-ecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee-----cCCCCe-EEE
Q psy6213 74 GAVVVWNLGQISRSKQERV-FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH-----SNTESV-RDV 146 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~v-~~~ 146 (330)
+.|.++| .+ .+.... +... . ++.+.|.+.+.+++.+.||.+.++|. +++...... ....++ ...
T Consensus 148 ~~v~viD-~t---~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~ 218 (373)
T 2mad_H 148 PAVGLVV-QG---GSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQP 218 (373)
T ss_pred CeEEEEE-CC---CCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecc
Confidence 7899999 87 555555 4321 1 24555656677788888999999999 777663322 122222 234
Q ss_pred EEcCCCCcEEEEEecCCcEEEEecCCCcc-ceeeecc----------CCCCeEEEEEcCCCCEEEEEec----------C
Q psy6213 147 EFNPHSPYAFASVSENGTIQQWDVRRPEK-CFYQFTA----------HSGPIFACDWHPEHAWLATASR----------D 205 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~----------d 205 (330)
.+.+++..+++. +..+.+.+.|+..... ....+.. .......+.++|+++.++++.. .
T Consensus 219 ~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~ 297 (373)
T 2mad_H 219 AQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA 297 (373)
T ss_pred eeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCC
Confidence 566776644444 4678999999875321 1122211 1223445789999988877653 3
Q ss_pred CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceE
Q psy6213 206 KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLAS 267 (330)
Q Consensus 206 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~ 267 (330)
+.|.++|..+.+..... ........++|+|||++++.++.. .++.|.++|+.+.+. +..
T Consensus 298 ~~V~VID~~t~~vv~~i-~~g~~p~~i~~s~Dg~~~l~v~~~-~~~~V~ViD~~t~~v-v~~ 356 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQI-SLGHDVDAISVAQDGGPDLYALSA-GTEVLHIYDAGAGDQ-DQS 356 (373)
T ss_pred CeEEEEECCCCEEEEEE-ECCCCcCeEEECCCCCeEEEEEcC-CCCeEEEEECCCCCE-Eee
Confidence 57999999988544433 455578999999999943444431 389999999999876 444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9e-14 Score=125.53 Aligned_cols=246 Identities=9% Similarity=0.115 Sum_probs=159.6
Q ss_pred CcccceEEEEeeCCCeee-----cC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCC-
Q psy6213 3 YLSPVHKHGLKADNGLAQ-----PS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG- 74 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~-----~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg- 74 (330)
|...+..++|||||++++ .| ...|++||+++++.... ...... ...++|+ +++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k-------~~~~~Ws--Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVK-------FSGISWL--GNEGFFYSSYDKP 196 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEE-------SCCCEEE--TTTEEEEEESSCC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCce-------eccEEEe--CCCEEEEEEecCc
Confidence 445688899999999965 23 36899999999886543 111111 1567898 566666666553
Q ss_pred ------------cEEEEECCCCCCC-ceeEEecc-cccceeEEEEEecCCCEEEEEec----CCcEEEEEeecCc-eeee
Q psy6213 75 ------------AVVVWNLGQISRS-KQERVFND-HKRTVNKVSFHYVESNWLISGSQ----DGTMRLFDIRCQE-STKI 135 (330)
Q Consensus 75 ------------~i~iw~~~~~~~~-~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~----d~~i~i~d~~~~~-~~~~ 135 (330)
.|++|++.+.... ..+..... |......+.|+| ++++|+.... +..|+++|+.+++ ....
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 3999998763211 12222223 444578899998 7777654432 2589999987764 3445
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEecC---CcEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEecCC---cE
Q psy6213 136 FHSNTESVRDVEFNPHSPYAFASVSEN---GTIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLATASRDK---TI 208 (330)
Q Consensus 136 ~~~~~~~v~~~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i 208 (330)
+..+....... +++++..+++....+ +.|..+|+.++.. ....+..|...+. .|+++++.|+....++ .|
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence 55555555554 677777666666554 6799999987432 1344555665554 8899898887766544 68
Q ss_pred EEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeec-ccCCeEEEEEccCCC
Q psy6213 209 KVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSL-VVDSSVNVWDIRRPY 262 (330)
Q Consensus 209 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~~~~i~i~d~~~~~ 262 (330)
++||+..........+....+..+.++++++.++.+.+. ..-+.++.||+.+++
T Consensus 353 ~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 353 EQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 999988653322223344567788889998877766540 112899999998765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-13 Score=115.29 Aligned_cols=258 Identities=9% Similarity=-0.014 Sum_probs=177.5
Q ss_pred CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc----------CCCcEEEEECCCCCCCceeEEe
Q psy6213 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA----------TNGAVVVWNLGQISRSKQERVF 93 (330)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~ 93 (330)
+.|.++|..+.+....+.... . . .++++| +++.++++. .++.|.++|..+ .+....+
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~-------~-P-gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t---~~vv~~I 165 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGF-------L-P-HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVT---FLPIADI 165 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECS-------S-C-EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTT---CCEEEEE
T ss_pred CeEEEEECCCCEEEEEEECCC-------C-C-ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCC---CcEEEEE
Confidence 799999999988876655432 1 2 689999 888887775 367899999988 5555554
Q ss_pred ccc-------ccceeEEEEEecCCCEEEEEec--CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 94 NDH-------KRTVNKVSFHYVESNWLISGSQ--DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 94 ~~~-------~~~i~~i~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
.-. ......+.++| ++++++++.. ++.|.+.|+.+++.+..+.... +....|+++..+++.+.||.
T Consensus 166 ~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~ 240 (426)
T 3c75_H 166 ELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGS 240 (426)
T ss_dssp EETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSS
T ss_pred ECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCC
Confidence 321 13456789998 8888888764 5789999999999888877432 13455666556778888898
Q ss_pred EEEEecCCCcccee----eeccCCCCe-EEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc-e--------ec---ccc
Q psy6213 165 IQQWDVRRPEKCFY----QFTAHSGPI-FACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY-S--------IN---TIA 227 (330)
Q Consensus 165 i~i~d~~~~~~~~~----~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~--------~~---~~~ 227 (330)
+.+.+..+ .+... .+.....++ ..+.+.+++..++.....+.+.+.|......... . .. ...
T Consensus 241 ~~~V~~~~-~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~ 319 (426)
T 3c75_H 241 LARVDFAD-GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG 319 (426)
T ss_dssp EEEEECCT-TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred EEEEECCC-CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence 88888843 33321 122112222 2456789888887778889999999865422100 0 00 011
Q ss_pred ceEEEEEcCCCCeEEEEeecc-------cCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCC-EEEEee-cCCeEee
Q psy6213 228 SVSRIKWRPQRKFHLASCSLV-------VDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ-LFIASS-RVSIIPR 298 (330)
Q Consensus 228 ~v~~~~~~~~~~~l~~~~~~~-------~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~i 298 (330)
....++++|+++.++++.... ..+.|.++|..+.+. +..+.. .....+++|+||++ +++++. .++.|.+
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv-v~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsV 397 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER-INKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHI 397 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE-EEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEE
Confidence 222368999999877765310 135799999999876 555543 23588999999999 888887 5899999
Q ss_pred eecc
Q psy6213 299 AKNI 302 (330)
Q Consensus 299 w~~~ 302 (330)
++..
T Consensus 398 ID~~ 401 (426)
T 3c75_H 398 YDAA 401 (426)
T ss_dssp EETT
T ss_pred EECC
Confidence 9754
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.7e-14 Score=115.62 Aligned_cols=271 Identities=10% Similarity=0.079 Sum_probs=166.7
Q ss_pred ccceEEEEeeCCCeeec-C---CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-----CCc
Q psy6213 5 SPVHKHGLKADNGLAQP-S---RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-----NGA 75 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~-g---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~ 75 (330)
..+..++++|+|+++++ . ++.++||.+.+++.. .+.............+..+++++ +++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCe
Confidence 35788999999999444 2 443666766554432 22110001111223468999999 7776665543 578
Q ss_pred EEEEECCCCCCCceeEEecc------cccceeEEEEEecCCCEEEEEe---cCCcEEEEEeecCceeeeeecCCCCeE-E
Q psy6213 76 VVVWNLGQISRSKQERVFND------HKRTVNKVSFHYVESNWLISGS---QDGTMRLFDIRCQESTKIFHSNTESVR-D 145 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~~------~~~~i~~i~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~v~-~ 145 (330)
|.+||+.+ .+....+.. +......+++.|.++..+++.. .++.|.+||+.+++..+.+..|..... .
T Consensus 95 i~~~d~~t---g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 95 LVAWDTLN---NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp EEEEETTT---TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred EEEEECCC---CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 99999987 454444432 2235689999973455555655 678999999988877666644322110 1
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCC-cEEEEeCC---CCc----
Q psy6213 146 VEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDK-TIKVWDLS---IKP---- 217 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~---~~~---- 217 (330)
..+.+++. .+.+.+.+|.++.|. ..+..++|+|+++.|+.+..++ .+..++.. ...
T Consensus 172 ~~~~~~g~-~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 172 IDLVIDGV-PVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp CCCEETTE-ECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHH
T ss_pred cceeECCE-EEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChh
Confidence 33444554 355566666654442 2467899999999888887766 45444432 110
Q ss_pred ccc---ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee-cCCCCeEEEEEecCCCEEEEeecC
Q psy6213 218 SLE---YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT-EHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 218 ~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
... ...........++++++|.. +++.. .++.|.+||..+++. ..... .+...+.++++.++++++++.+..
T Consensus 236 ~~~~~~~~~g~~g~pdgia~d~~G~l-~va~~--~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 236 ELGSKIERYSEKPICDGISIDKDHNI-YVGDL--AHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp HHHTTCEEEEECCSCSCEEECTTCCE-EEEEG--GGTEEEEEETTTTEE-EEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred hhhcceEecccCCCCceEEECCCCCE-EEEcc--CCCeEEEEECCCCCE-EEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 000 11122335667999999985 55555 589999999844542 22222 224568999999999988888777
Q ss_pred CeEeeee
Q psy6213 294 SIIPRAK 300 (330)
Q Consensus 294 g~i~iw~ 300 (330)
+.+.+|.
T Consensus 312 ~~~~~f~ 318 (343)
T 2qe8_A 312 HHSAPLN 318 (343)
T ss_dssp GGSGGGB
T ss_pred ccccccc
Confidence 6666554
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=118.96 Aligned_cols=175 Identities=11% Similarity=0.050 Sum_probs=131.4
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCC--------CCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEE
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQIS--------RSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRL 124 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i 124 (330)
+++.+++++ ...++++|+.++ +.+|++.... ..+.... ..+.. |..++| ++++|+++ .++.|++
T Consensus 39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 368999999 889999999875 6679875421 0111122 23556 999999 57888888 7899999
Q ss_pred EEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec
Q psy6213 125 FDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 125 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
||+.+.........+..++.++.+.+.. ++++..||.|.+||+.+.. ... +...|++++|+|+| ++.|..
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~-~~~----~~~~Vs~v~WSpkG--~~vg~~ 180 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKS-TKQ----LAQNVTSFDVTNSQ--LAVLLK 180 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCC-EEE----EEESEEEEEECSSE--EEEEET
T ss_pred EEchhhhccCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCc-ccc----ccCCceEEEEcCCc--eEEEEc
Confidence 9998877666666677788888776542 7888999999999998633 221 45689999999999 678999
Q ss_pred CCcEEEEeCCCCcc--ccce---------eccccceEEEEEcCCCCeEEEEe
Q psy6213 205 DKTIKVWDLSIKPS--LEYS---------INTIASVSRIKWRPQRKFHLASC 245 (330)
Q Consensus 205 dg~i~i~d~~~~~~--~~~~---------~~~~~~v~~~~~~~~~~~l~~~~ 245 (330)
||.+++|+....+. .... ..+...|.++.|.+++.++++-.
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999998877642 1111 12568899999999999866543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-12 Score=104.37 Aligned_cols=221 Identities=11% Similarity=0.042 Sum_probs=145.7
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK 134 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 134 (330)
...+|+|+++.++++...++.|..||..+ .+. ..+. ....+.++.++| +++++++. .+ .|.+||..+++...
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~---~~~-~~~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLAS---GRK-TVHA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTL 123 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTT---TEE-EEEE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCC---CcE-EEEE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEE
Confidence 57889994466777777788999999876 322 2222 346789999998 77766654 44 59999988776543
Q ss_pred eeec----CCCCeEEEEEcCCCCcEEEEEec------CCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEE-e
Q psy6213 135 IFHS----NTESVRDVEFNPHSPYAFASVSE------NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATA-S 203 (330)
Q Consensus 135 ~~~~----~~~~v~~~~~~~~~~~~~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~ 203 (330)
.... ....+..++++|+|+ ++++... .+.|..++ + ++. ..+..+......++|+|+++.++.+ +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~-g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--K-GKV-TKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--T-TEE-EEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred EeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--C-CcE-EEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 2221 123588999999998 4554432 24566666 3 332 2232333457899999999876555 4
Q ss_pred cCCcEEEEeCC--CC-ccc--cce--e-ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCe
Q psy6213 204 RDKTIKVWDLS--IK-PSL--EYS--I-NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVV 275 (330)
Q Consensus 204 ~dg~i~i~d~~--~~-~~~--~~~--~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v 275 (330)
.++.|.+||+. ++ ... ... . .....+..++++++|.. .++.. .++.|..||. +++. +..+..+...+
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l-wva~~--~~~~v~~~d~-~g~~-~~~i~~~~~~~ 273 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI-WNARW--GEGAVDRYDT-DGNH-IARYEVPGKQT 273 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE-EEEEE--TTTEEEEECT-TCCE-EEEEECSCSBE
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE-EEEEe--CCCEEEEECC-CCCE-EEEEECCCCCc
Confidence 56889999986 43 211 111 1 12345788999999985 44443 3789999998 4443 55666666679
Q ss_pred EEEEEe-cCCCEEEEeecC
Q psy6213 276 SGLAWR-GDPQLFIASSRV 293 (330)
Q Consensus 276 ~~~~~~-~~~~~l~s~~~d 293 (330)
.+++|+ |+++.|+.++..
T Consensus 274 ~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 274 TCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEEESTTSCEEEEEEBC
T ss_pred EEEEEecCCCCEEEEEecC
Confidence 999998 888777655443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-14 Score=116.12 Aligned_cols=172 Identities=11% Similarity=0.084 Sum_probs=129.6
Q ss_pred ceeEEEEEecCCCEEEEEecCCcEEEEEeecCc-----------eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEE
Q psy6213 99 TVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE-----------STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQ 167 (330)
Q Consensus 99 ~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i 167 (330)
+++.+++++ ...++++|+.+ .+.+|+++..+ ..... .... |+.++| ++. .++++ .++.|++
T Consensus 39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~-~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGD-QVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETT-EEEEE-ESSEEEE
T ss_pred cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCC-EEEEE-cCCcEEE
Confidence 688999997 88889999987 56779876443 11222 3555 999999 776 46666 8899999
Q ss_pred EecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeec
Q psy6213 168 WDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSL 247 (330)
Q Consensus 168 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 247 (330)
||+++.. .......|...+.++.+.+. .+++++.||.+.+||+.++... .....|++++|+|+| ++++.
T Consensus 111 ~dv~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~----~~~~~Vs~v~WSpkG--~~vg~-- 179 (388)
T 1xip_A 111 LDLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK----QLAQNVTSFDVTNSQ--LAVLL-- 179 (388)
T ss_dssp EESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE----EEEESEEEEEECSSE--EEEEE--
T ss_pred EEchhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc----cccCCceEEEEcCCc--eEEEE--
Confidence 9998743 44455667778888877654 3888999999999999977442 245689999999999 35555
Q ss_pred ccCCeEEEEEccCCCcc-ceEe------e---cCCCCeEEEEEecCCCEEEEe
Q psy6213 248 VVDSSVNVWDIRRPYIP-LASF------T---EHKDVVSGLAWRGDPQLFIAS 290 (330)
Q Consensus 248 ~~~~~i~i~d~~~~~~~-~~~~------~---~~~~~v~~~~~~~~~~~l~s~ 290 (330)
.||.+++|+....... ...+ . +|...|.++.|.+++.++++-
T Consensus 180 -~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 180 -KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp -TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred -cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 4999999988776521 2233 2 367889999999999988874
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-12 Score=103.89 Aligned_cols=219 Identities=9% Similarity=0.055 Sum_probs=142.3
Q ss_pred eEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 8 HKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 8 ~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
.+..|+|++.. +.++ ++.|..|+.++++... +.. ...+.+++|+| +++++++. .+ .|.+||..+
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~--------~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~- 118 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL--------PFMGSALAKIS-DSKQLIAS-DD-GLFLRDTAT- 118 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC--------SSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTT-
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC--------CCcceEEEEeC-CCeEEEEE-CC-CEEEEECCC-
Confidence 57889998555 5555 8899999998765432 211 12368899999 88777654 44 499999876
Q ss_pred CCCceeEEecc----cccceeEEEEEecCCCEEEEEec------CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCc
Q psy6213 85 SRSKQERVFND----HKRTVNKVSFHYVESNWLISGSQ------DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPY 154 (330)
Q Consensus 85 ~~~~~~~~~~~----~~~~i~~i~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 154 (330)
.+....... ....+..++++| +++++++... .+.|..++ +++.. .+.........++|+|+++.
T Consensus 119 --g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 119 --GVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTT 192 (326)
T ss_dssp --CCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCE
T ss_pred --CcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCE
Confidence 332222111 124688999998 7776665432 23455555 44433 23223345678999999986
Q ss_pred EEEEEecCCcEEEEecC--CC-c----cceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecccc
Q psy6213 155 AFASVSENGTIQQWDVR--RP-E----KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIA 227 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~--~~-~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 227 (330)
++++.+.++.|.+||+. ++ . .....+......+..++++++|.+.++...++.|..||.. ++..........
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~ 271 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGK 271 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCS
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCC
Confidence 56666667899999986 32 1 1122222234567889999999877777677889999984 433333333445
Q ss_pred ceEEEEEc-CCCCeEEEEee
Q psy6213 228 SVSRIKWR-PQRKFHLASCS 246 (330)
Q Consensus 228 ~v~~~~~~-~~~~~l~~~~~ 246 (330)
.+++++|+ |++..|+++..
T Consensus 272 ~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEB
T ss_pred CcEEEEEecCCCCEEEEEec
Confidence 79999998 88887766665
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-13 Score=121.54 Aligned_cols=236 Identities=10% Similarity=0.089 Sum_probs=155.1
Q ss_pred cceeeeeecccCCcEEEEE-----cCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC------
Q psy6213 52 FSCNDVAWSCIEENHIATG-----ATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG------ 120 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~------ 120 (330)
..+..++||| ++++||.+ +....|++||+.+ ++.... .........++|+ +++.|+.++.+.
T Consensus 129 ~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~t---g~~~~~-~~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 129 TALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVES---KQPLET-PLKDVKFSGISWL--GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp CEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTT---CSEEEE-EEEEEESCCCEEE--TTTEEEEEESSCCC----
T ss_pred EEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCC---CCCCcc-ccCCceeccEEEe--CCCEEEEEEecCcccccc
Confidence 4578899999 99988843 2235699999988 443322 1111123577899 667777776663
Q ss_pred -------cEEEEEeecCce--eeeee--c-CCCCeEEEEEcCCCCcEEEEEecC---CcEEEEecCCCccceeeeccCCC
Q psy6213 121 -------TMRLFDIRCQES--TKIFH--S-NTESVRDVEFNPHSPYAFASVSEN---GTIQQWDVRRPEKCFYQFTAHSG 185 (330)
Q Consensus 121 -------~i~i~d~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~ 185 (330)
.|++|++.++.. ...+. . +......+.|+|++++++++...+ ..|+++|+.++......+..+..
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 399999876643 22232 2 334578899999999866665533 58999999875445556666666
Q ss_pred CeEEEEEcCCCCEEEEEe-cC---CcEEEEeCCCCcc--ccceeccccceEEEEEcCCCCeEEEEeecccCC--eEEEEE
Q psy6213 186 PIFACDWHPEHAWLATAS-RD---KTIKVWDLSIKPS--LEYSINTIASVSRIKWRPQRKFHLASCSLVVDS--SVNVWD 257 (330)
Q Consensus 186 ~i~~~~~~~~~~~l~~~~-~d---g~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~--~i~i~d 257 (330)
..... ++++|..|+..+ .+ +.|..+|+.++.. ......+...+. .|++++++|++... .++ .|++||
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~--~~g~~~l~~~d 356 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM--VDATARVEQFD 356 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE--ETTEEEEEEEC
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE--ECCeeEEEEEE
Confidence 55555 666666555444 33 5799999987643 233444544444 89999998777776 455 688898
Q ss_pred ccCCCccceEee-cCCCCeEEEEEecCCCEEEEeecC----CeEeeeec
Q psy6213 258 IRRPYIPLASFT-EHKDVVSGLAWRGDPQLFIASSRV----SIIPRAKN 301 (330)
Q Consensus 258 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d----g~i~iw~~ 301 (330)
+.... ...+. ...+.+..+.++|++..|+....+ +.++.|+.
T Consensus 357 ~~g~~--~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 357 YEGKR--VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp TTSCE--EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred CCCCe--eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 87543 33333 234567788888888877766554 77888764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-12 Score=105.61 Aligned_cols=261 Identities=14% Similarity=0.100 Sum_probs=164.7
Q ss_pred CeEEEEEcCC-----cceeeeeceeecc-c-----cccccceeeeeec--ccCCcEE-EEEcCCCcEEEEECCCC-CCCc
Q psy6213 24 NVFKIFLIKD-----TEFVETHNLRVGK-N-----INLNFSCNDVAWS--CIEENHI-ATGATNGAVVVWNLGQI-SRSK 88 (330)
Q Consensus 24 ~~i~iw~~~~-----~~~~~~~~~~~~~-~-----~~~~~~v~~~~~~--~~~~~~l-~~~~~dg~i~iw~~~~~-~~~~ 88 (330)
..+.+.|++. ++.+......... . .....++.+..++ + ++++| +.+..++.|.++|+.+. .+.+
T Consensus 43 d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~-~r~~l~v~~l~s~~I~viD~~t~p~~p~ 121 (462)
T 2ece_A 43 DFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNI-ERRFLIVPGLRSSRIYIIDTKPNPREPK 121 (462)
T ss_dssp CEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTC-CSCEEEEEBTTTCCEEEEECCSCTTSCE
T ss_pred CeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCc-cCCEEEEccCCCCeEEEEECCCCCCCce
Confidence 3566777765 5555544433311 1 1112233444556 6 55554 55667889999999752 2345
Q ss_pred eeEEec-------ccccceeEEEEEecCCCEEEEEecC------CcEEEEEeecCceeeeeecCCC---CeEEEEEcCCC
Q psy6213 89 QERVFN-------DHKRTVNKVSFHYVESNWLISGSQD------GTMRLFDIRCQESTKIFHSNTE---SVRDVEFNPHS 152 (330)
Q Consensus 89 ~~~~~~-------~~~~~i~~i~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~---~v~~~~~~~~~ 152 (330)
..+++. .....-..+...| ++ +++++..+ |.|.++|.++.+.+..+..... .-..+.|+|++
T Consensus 122 ~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~ 199 (462)
T 2ece_A 122 IIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN 199 (462)
T ss_dssp EEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT
T ss_pred eeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC
Confidence 555552 0112445677788 66 77766655 7899999999999888863322 23468889999
Q ss_pred CcEEEEEe-------------------cCCcEEEEecCCCccceeeeccC--CCCeEEEEE--cCCCCEEEEEec-----
Q psy6213 153 PYAFASVS-------------------ENGTIQQWDVRRPEKCFYQFTAH--SGPIFACDW--HPEHAWLATASR----- 204 (330)
Q Consensus 153 ~~~~~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~--~~~i~~~~~--~~~~~~l~~~~~----- 204 (330)
+ .+++.. .+.+|.+||+.+ .+.+.++... ......+.| +|+++++.+++.
T Consensus 200 ~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~ 277 (462)
T 2ece_A 200 E-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD 277 (462)
T ss_dssp T-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred C-EEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence 8 466653 368899999997 5556555542 123445555 999998877774
Q ss_pred -CCcEEEEeCCCCcc--cc----------ceec--------cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 205 -DKTIKVWDLSIKPS--LE----------YSIN--------TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 205 -dg~i~i~d~~~~~~--~~----------~~~~--------~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
+++|.+|....+.. .. .... .......+.++|||++|+++.- ..+.|.+||+.....
T Consensus 278 Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr--g~d~VavfdV~d~~~ 355 (462)
T 2ece_A 278 LSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW--GIGEVRQYDISNPFK 355 (462)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET--TTTEEEEEECSSTTS
T ss_pred CCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC--CCCEEEEEEecCCCC
Confidence 56787665443210 00 0000 0245788999999999888887 689999999964432
Q ss_pred --cceEeecCC--------------CCeEEEEEecCCCEEEEee
Q psy6213 264 --PLASFTEHK--------------DVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 264 --~~~~~~~~~--------------~~v~~~~~~~~~~~l~s~~ 291 (330)
.+..+.... +....++++|||++|+++.
T Consensus 356 ~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 356 PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 122222110 1358899999999999987
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-12 Score=107.65 Aligned_cols=247 Identities=14% Similarity=0.104 Sum_probs=162.4
Q ss_pred EEEEeeCCCe-eecC-----------CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC--CC
Q psy6213 9 KHGLKADNGL-AQPS-----------RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT--NG 74 (330)
Q Consensus 9 ~~~~s~~~~~-~~~g-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg 74 (330)
.++++|||++ +++. ++.|.++|..+.+....+................++|+| ++++++++.. ++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~ 200 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAP 200 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCC
Confidence 7999999998 3331 468999999998887766543111000001126789999 9998888764 57
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeee----eecCCCCe-EEEEEc
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI----FHSNTESV-RDVEFN 149 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~v-~~~~~~ 149 (330)
.|.+.|+.+ .+.+..+.... +....|.+...+++.+.||.+.+.+..+++.... +.....++ ..+.+.
T Consensus 201 ~VsVID~~t---~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 201 AVGVVDLEG---KTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS 273 (426)
T ss_dssp EEEEEETTT---TEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC
T ss_pred eEEEEECCC---CeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec
Confidence 899999998 66666655321 1234454557777888899998888865554421 22222222 235678
Q ss_pred CCCCcEEEEEecCCcEEEEecCCCccce-eeec----------cCCCCeEEEEEcCCCCEEEEEec----------CCcE
Q psy6213 150 PHSPYAFASVSENGTIQQWDVRRPEKCF-YQFT----------AHSGPIFACDWHPEHAWLATASR----------DKTI 208 (330)
Q Consensus 150 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~-~~~~----------~~~~~i~~~~~~~~~~~l~~~~~----------dg~i 208 (330)
+++.. ++.....+.+.+.|+......+ ..+. ........++++|+++.+++... ++.|
T Consensus 274 ~dg~~-~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~V 352 (426)
T 3c75_H 274 LRSGR-LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFV 352 (426)
T ss_dssp TTTCE-EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEE
T ss_pred CCCCE-EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEE
Confidence 88885 4455678899999986522111 1111 01122234789999887776642 3579
Q ss_pred EEEeCCCCccccceeccccceEEEEEcCCCC-eEEEEeecccCCeEEEEEccCCCccceEe
Q psy6213 209 KVWDLSIKPSLEYSINTIASVSRIKWRPQRK-FHLASCSLVVDSSVNVWDIRRPYIPLASF 268 (330)
Q Consensus 209 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~i~i~d~~~~~~~~~~~ 268 (330)
.++|..+.+.+.. .........++|+||++ .++++.. .++.|.++|+.+.+. +..+
T Consensus 353 sVID~~T~kvv~~-I~vg~~P~gia~spDg~~~lyv~n~--~s~~VsVID~~t~kv-v~tI 409 (426)
T 3c75_H 353 VVLNAETGERINK-IELGHEIDSINVSQDAEPLLYALSA--GTQTLHIYDAATGEE-LRSV 409 (426)
T ss_dssp EEEETTTCCEEEE-EEEEEEECEEEECCSSSCEEEEEET--TTTEEEEEETTTCCE-EEEE
T ss_pred EEEECCCCeEEEE-EECCCCcCeEEEccCCCEEEEEEcC--CCCeEEEEECCCCCE-EEEe
Confidence 9999999855443 34445789999999999 6666654 489999999999876 5554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-12 Score=104.80 Aligned_cols=225 Identities=9% Similarity=0.032 Sum_probs=149.1
Q ss_pred eeeeeecccCCc-EEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 54 CNDVAWSCIEEN-HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 54 v~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
.....|+| +++ ++++...++.|..|+... . ...+..+...+..+++++ +++++++...++.|..|+.+ ++.
T Consensus 47 ~egp~~~~-~g~~l~~~d~~~~~i~~~~~~g----~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 47 SEGPAWWE-AQRTLVWSDLVGRRVLGWREDG----T-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQA 118 (305)
T ss_dssp EEEEEEEG-GGTEEEEEETTTTEEEEEETTS----C-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCE
T ss_pred ccCCeEeC-CCCEEEEEECCCCEEEEEeCCC----C-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCE
Confidence 36789999 666 677777889999998732 2 234445567789999998 78866665556789999975 543
Q ss_pred eeeeec----CCCCeEEEEEcCCCCcEEEE----Eec-------------CCcEEEEecCCCccceeeeccCCCCeEEEE
Q psy6213 133 TKIFHS----NTESVRDVEFNPHSPYAFAS----VSE-------------NGTIQQWDVRRPEKCFYQFTAHSGPIFACD 191 (330)
Q Consensus 133 ~~~~~~----~~~~v~~~~~~~~~~~~~~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~ 191 (330)
...... ....+..++++|+|. ++++ |.. .+.|+.+|..+ ++... +. .......++
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~-g~~~~-~~-~~~~p~gl~ 194 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG-SPLQR-MA-DLDHPNGLA 194 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS-CCCEE-EE-EESSEEEEE
T ss_pred EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCC-CcEEE-Ee-cCCCCcceE
Confidence 222111 113467899999998 5654 321 25678888765 22222 22 345678899
Q ss_pred EcCCCCEEEEEecC------CcEEEEeCCCCcc---ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 192 WHPEHAWLATASRD------KTIKVWDLSIKPS---LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 192 ~~~~~~~l~~~~~d------g~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
|+|+++.|+.+... +.|.+||+..... .............++++++|+ +.++.. + .|.+|+.. ++
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~---~-gv~~~~~~-g~ 268 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG---T-GVCVFDSD-GQ 268 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCS---S-EEEEECTT-SC
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecC---C-cEEEECCC-CC
Confidence 99999988777665 6899999875421 000001123456789999998 455543 4 49999984 43
Q ss_pred ccceEeecCCCCeEEEEEecCCCEEEEeecCCeEee
Q psy6213 263 IPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPR 298 (330)
Q Consensus 263 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~i 298 (330)
. +..+..+. .+.+++|+|+++.|..++.++..++
T Consensus 269 ~-~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 269 L-LGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp E-EEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred E-EEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 3 45555444 5889999999998888887764444
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-11 Score=99.53 Aligned_cols=221 Identities=8% Similarity=-0.020 Sum_probs=138.6
Q ss_pred ccceEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 5 SPVHKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 5 ~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
.......|+|+|+. +.++ ++.|..|+. +++. ..+.... ..+..+++++ +++++++...++.|..|+.
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~-------~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDAT-------AFTNGNAVDA-QQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESC-------SCEEEEEECT-TSCEEEEETTTTEEEEECT
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCC-------CccceeeECC-CCCEEEEECCCCEEEEECC
Confidence 34567899999994 4455 899999987 4443 2222211 1258899999 8887776666678999987
Q ss_pred CCCCCCceeE-Eeccc-ccceeEEEEEecCCCEEEE----Eec-------------CCcEEEEEeecCceeeeeecCCCC
Q psy6213 82 GQISRSKQER-VFNDH-KRTVNKVSFHYVESNWLIS----GSQ-------------DGTMRLFDIRCQESTKIFHSNTES 142 (330)
Q Consensus 82 ~~~~~~~~~~-~~~~~-~~~i~~i~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~ 142 (330)
+. . ..... ..... ...+..+++.| +++++++ |.. .+.|+.+|..+++..... ....
T Consensus 115 ~g-~-~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~ 189 (305)
T 3dr2_A 115 DG-Q-AHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH 189 (305)
T ss_dssp TS-C-EEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred CC-C-EEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence 52 1 11111 11111 13467899998 8887776 331 246777777666544333 3345
Q ss_pred eEEEEEcCCCCcEEEEEecC------CcEEEEecCCCcc-ceeee-ccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCC
Q psy6213 143 VRDVEFNPHSPYAFASVSEN------GTIQQWDVRRPEK-CFYQF-TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214 (330)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~d------g~i~i~d~~~~~~-~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 214 (330)
...++|+|+++. ++.+... +.|.+|++..... ....+ ....+....++++++|++. +++.+ .|.+||..
T Consensus 190 p~gl~~spdg~~-lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~~~~ 266 (305)
T 3dr2_A 190 PNGLAFSPDEQT-LYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVFDSD 266 (305)
T ss_dssp EEEEEECTTSSE-EEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEECTT
T ss_pred CcceEEcCCCCE-EEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEECCC
Confidence 678999999985 4444443 7899999875320 00111 1123456678999999944 44454 49999985
Q ss_pred CCccccceeccccceEEEEEcCCCCeEEEEe
Q psy6213 215 IKPSLEYSINTIASVSRIKWRPQRKFHLASC 245 (330)
Q Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 245 (330)
.. ..... .....+..++|+|+++.|+++.
T Consensus 267 g~-~~~~~-~~~~~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 267 GQ-LLGHI-PTPGTASNCTFDQAQQRLFITG 295 (305)
T ss_dssp SC-EEEEE-ECSSCCCEEEECTTSCEEEEEE
T ss_pred CC-EEEEE-ECCCceeEEEEeCCCCEEEEEc
Confidence 43 33222 2233688999999998866665
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-12 Score=103.59 Aligned_cols=250 Identities=8% Similarity=-0.105 Sum_probs=162.9
Q ss_pred eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc----------CCCcEEEEECCCCCCCceeEEec
Q psy6213 25 VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA----------TNGAVVVWNLGQISRSKQERVFN 94 (330)
Q Consensus 25 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~ 94 (330)
.|.++|.++++.+..+..... . .+.++| ++++++++. .++.|.+||+.+ .+....+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~--------P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T---~~vv~~I~ 113 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL--------S-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVT---FLPIADIE 113 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT--------C-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTT---CCEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCC--------C-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCC---CCEEEEEE
Confidence 888999999988776543321 2 689999 888888775 367899999998 66666664
Q ss_pred cc-------ccceeEEEEEecCCCEEEEEec--CCcEEE--EEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCC
Q psy6213 95 DH-------KRTVNKVSFHYVESNWLISGSQ--DGTMRL--FDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENG 163 (330)
Q Consensus 95 ~~-------~~~i~~i~~~~~~~~~l~~~~~--d~~i~i--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg 163 (330)
.. ......+.++| ++++++++.. +..+.+ +|..+ +..+.... . ..+.|+++..+++.+.||
T Consensus 114 v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg 185 (368)
T 1mda_H 114 LPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPA 185 (368)
T ss_dssp ETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTT
T ss_pred CCCccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCC
Confidence 32 13466899999 8888887764 457888 99887 44443211 1 234567766777788899
Q ss_pred cEEEEecCC----Ccccee----eeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc-ccceec--------c-
Q psy6213 164 TIQQWDVRR----PEKCFY----QFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS-LEYSIN--------T- 225 (330)
Q Consensus 164 ~i~i~d~~~----~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~--------~- 225 (330)
.+.+.|+.+ .++... .+.....+. . .+++..++..+. +.+.+.|...... ...... .
T Consensus 186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~ 260 (368)
T 1mda_H 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADN 260 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTT
T ss_pred CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccc
Confidence 998888876 222221 111122333 3 566666666666 8999999865421 111000 0
Q ss_pred --ccceEEEEEcCCCCeEEEEeecc-c-----CCeEEEEEccCCCccceEeecCCCCeEEEEEecCCC-EEEEee-cCCe
Q psy6213 226 --IASVSRIKWRPQRKFHLASCSLV-V-----DSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ-LFIASS-RVSI 295 (330)
Q Consensus 226 --~~~v~~~~~~~~~~~l~~~~~~~-~-----~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~ 295 (330)
......++++|+++.++++.... . ++.+.++|+.+.+. +..+.... ...+++|+|||+ .+++.. .++.
T Consensus 261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v-v~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPISNGH-DSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECCEEEE-EECEEEECCSSSCEEEEEETTTTE
T ss_pred cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeE-EEEEECCC-CcceEEECCCCCEEEEEccCCCCe
Confidence 11122268999999877654300 0 13566999999876 55554332 588999999998 456666 5999
Q ss_pred Eeeeecc
Q psy6213 296 IPRAKNI 302 (330)
Q Consensus 296 i~iw~~~ 302 (330)
|.+++..
T Consensus 339 VsVID~~ 345 (368)
T 1mda_H 339 LDIYDAA 345 (368)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 9999854
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-10 Score=88.48 Aligned_cols=245 Identities=9% Similarity=0.056 Sum_probs=150.2
Q ss_pred CCeEEEEEcCCcceee-----eeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccc
Q psy6213 23 RNVFKIFLIKDTEFVE-----THNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHK 97 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 97 (330)
.+.|+.++++...... ..... ...+..++|++.++.++++-..++.|..++... ...........
T Consensus 9 ~~~I~~~~~~g~~~~~~~~~~~~~~~-------~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g---~~~~~~~~~~~ 78 (267)
T 1npe_A 9 TGKIERLPLERNTMKKTEAKAFLHIP-------AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG---GEPTTIIRQDL 78 (267)
T ss_dssp EEEEEEEEESSSCBCGGGCEEEEEEE-------EEEEEEEEEETTTTEEEEEETTTTEEEEEESSS---CCCEEEECTTC
T ss_pred CCeEEEEEecCcccccccceeeecCC-------CCcEEEEEEecCCCEEEEEECCCCEEEEEecCC---CCcEEEEECCC
Confidence 5578888887644211 11111 112478999983445555555678999999875 22222222222
Q ss_pred cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec--CCcEEEEecCCCcc
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE--NGTIQQWDVRRPEK 175 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--dg~i~i~d~~~~~~ 175 (330)
.....+++.|.++.++++-...+.|.+++++.................++++|++.+++++... .+.|..+++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~- 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN- 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-
Confidence 5678999998445555565667899999986433222222222567899999977655555443 4688888876422
Q ss_pred ceeee-ccCCCCeEEEEEcCCCCEEE-EEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeE
Q psy6213 176 CFYQF-TAHSGPIFACDWHPEHAWLA-TASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSV 253 (330)
Q Consensus 176 ~~~~~-~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i 253 (330)
...+ .........++++|++..|+ +-...+.|.++|........ ..........++.. +..++++.. ..+.|
T Consensus 158 -~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~-~~~~~~~P~gi~~d--~~~lyva~~--~~~~v 231 (267)
T 1npe_A 158 -RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK-VLEGLQYPFAVTSY--GKNLYYTDW--KTNSV 231 (267)
T ss_dssp -CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE-EEECCCSEEEEEEE--TTEEEEEET--TTTEE
T ss_pred -cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE-EecCCCCceEEEEe--CCEEEEEEC--CCCeE
Confidence 2222 12334678999999876554 44466789999987643222 22222344566654 455666665 57899
Q ss_pred EEEEccCCCccceEeecCC-CCeEEEEEecCCC
Q psy6213 254 NVWDIRRPYIPLASFTEHK-DVVSGLAWRGDPQ 285 (330)
Q Consensus 254 ~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~ 285 (330)
..+|..+++. +..+.... ....++++.|++.
T Consensus 232 ~~~d~~~g~~-~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 232 IAMDLAISKE-MDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEETTTTEE-EEEECCSSCCCCCCEEEECSCC
T ss_pred EEEeCCCCCc-eEEEccccccccceeeecCccC
Confidence 9999988765 55554332 2478888888765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-11 Score=99.20 Aligned_cols=227 Identities=11% Similarity=0.096 Sum_probs=146.7
Q ss_pred EEe--eCCCe-eecC--CCeEEEEEcCCc----ceeeeecee-eccccccccceeeeeecccCCcEEEEEcCC------C
Q psy6213 11 GLK--ADNGL-AQPS--RNVFKIFLIKDT----EFVETHNLR-VGKNINLNFSCNDVAWSCIEENHIATGATN------G 74 (330)
Q Consensus 11 ~~s--~~~~~-~~~g--d~~i~iw~~~~~----~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g 74 (330)
.++ +++++ ++.| ++.|.++|+.+. +.....+.. ........ ....+...| ++ +++++..+ |
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g 164 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYS-RLHTVHCGP-DA-IYISALGNEEGEGPG 164 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEE-EEEEEEECS-SC-EEEEEEEETTSCSCC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCC-cccceeECC-Ce-EEEEcCCCcCCCCCC
Confidence 347 88888 5555 999999999754 333333100 00000111 125677888 77 66666555 7
Q ss_pred cEEEEECCCCCCCceeEEecccc---cceeEEEEEecCCCEEEEEe-------------------cCCcEEEEEeecCce
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHK---RTVNKVSFHYVESNWLISGS-------------------QDGTMRLFDIRCQES 132 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~ 132 (330)
.|.++|.++ .+.+..+.... .--..+-|+| +++.+++.. ...+|.+||+.+++.
T Consensus 165 ~v~vlD~~T---~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 165 GILMLDHYS---FEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp EEEEECTTT---CCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred eEEEEECCC---CeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 899999988 66666665222 2244588898 788888774 367999999998888
Q ss_pred eeeeecCC--CCeEEEEE--cCCCCcEEEEEe-----cCCcEEEEecCCCccc--eee--ecc----------------C
Q psy6213 133 TKIFHSNT--ESVRDVEF--NPHSPYAFASVS-----ENGTIQQWDVRRPEKC--FYQ--FTA----------------H 183 (330)
Q Consensus 133 ~~~~~~~~--~~v~~~~~--~~~~~~~~~~~~-----~dg~i~i~d~~~~~~~--~~~--~~~----------------~ 183 (330)
+.++.... .....+.| +|++++.++++- .+++|.+|.... +.. ... +.. -
T Consensus 241 ~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 241 IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccC
Confidence 88777532 23455655 999997666666 677887766543 210 000 000 0
Q ss_pred CCCeEEEEEcCCCCEEEEEec-CCcEEEEeCCCCcc--ccceeccc---------------cceEEEEEcCCCCeEEEEe
Q psy6213 184 SGPIFACDWHPEHAWLATASR-DKTIKVWDLSIKPS--LEYSINTI---------------ASVSRIKWRPQRKFHLASC 245 (330)
Q Consensus 184 ~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~--~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~ 245 (330)
......+.++|||++|.++.. .+.|.+||+..... +....... .....++++|||++|+++.
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 245788999999999887774 67899999864321 11222221 1368899999999988776
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-12 Score=103.07 Aligned_cols=252 Identities=8% Similarity=-0.044 Sum_probs=158.5
Q ss_pred EEEEeeCCCe-eec----------C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC--CC
Q psy6213 9 KHGLKADNGL-AQP----------S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT--NG 74 (330)
Q Consensus 9 ~~~~s~~~~~-~~~----------g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg 74 (330)
.+.++|||++ .++ . ++.|.+||..+++....+................++++| ++++++++.. +.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~ 147 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEccCCCC
Confidence 6999999998 333 2 678999999999988777654111000001126899999 9988888864 35
Q ss_pred cEEE--EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec-----Cceee----eeecCCCCe
Q psy6213 75 AVVV--WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC-----QESTK----IFHSNTESV 143 (330)
Q Consensus 75 ~i~i--w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~----~~~~~~~~v 143 (330)
.+.+ +|..+ ...+..- +. ..+.|.+...+++.+.||.+.+.|+.+ ++... .+.....+.
T Consensus 148 ~v~V~~iD~~t------v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~ 217 (368)
T 1mda_H 148 AAGLSVPGASD------DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA 217 (368)
T ss_dssp EEEEEETTTEE------EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE
T ss_pred eEEEEEEchhh------ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc
Confidence 6888 88754 2222211 11 223454566777778899999999876 33321 122223343
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEecCCCc-cceeeecc----------CCCCeEEEEEcCCCCEEEEEec-C------
Q psy6213 144 RDVEFNPHSPYAFASVSENGTIQQWDVRRPE-KCFYQFTA----------HSGPIFACDWHPEHAWLATASR-D------ 205 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~-d------ 205 (330)
. .+++.. ++..+. +.+.+.|+.... ..+..+.. .......++++|+++.++.+.. +
T Consensus 218 ---~-~~~~~~-~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~ 291 (368)
T 1mda_H 218 ---Q-ANYPGM-LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA 291 (368)
T ss_dssp ---E-ETTTTE-EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred ---c-cccCCE-EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccc
Confidence 3 566664 444455 899999986522 11221110 1112223789999988876543 2
Q ss_pred --CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeeccc-CCeEEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 206 --KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVV-DSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 206 --g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
+.+.++|+.+.+... ..........++|+|||++++++.. . ++.|.++|+.+.+. +..+... ....++++.+
T Consensus 292 ~~~~~~ViD~~t~~vv~-~i~vg~~p~gi~~s~Dg~~l~va~~--~~~~~VsVID~~t~kv-v~~I~vg-~~P~~i~~~~ 366 (368)
T 1mda_H 292 AAENTSSVTASVGQTSG-PISNGHDSDAIIAAQDGASDNYANS--AGTEVLDIYDAASDQD-QSSVELD-KGPESLSVQN 366 (368)
T ss_dssp CEEEEEEEESSSCCEEE-CCEEEEEECEEEECCSSSCEEEEEE--TTTTEEEEEESSSCEE-EEECCCC-SCCCEEECCC
T ss_pred cCCCEEEEECCCCeEEE-EEECCCCcceEEECCCCCEEEEEcc--CCCCeEEEEECCCCcE-EEEEECC-CCCCEEEeec
Confidence 356699999985543 3334457899999999987666664 2 89999999999876 5666543 3345666543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-11 Score=104.22 Aligned_cols=235 Identities=9% Similarity=0.042 Sum_probs=154.6
Q ss_pred eCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeee-c-ccCCcEEEEEc-----------------
Q psy6213 14 ADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAW-S-CIEENHIATGA----------------- 71 (330)
Q Consensus 14 ~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~l~~~~----------------- 71 (330)
+||++ .++. ++.|.+.|+++.+....+.++.+.. ...+++ + | +++++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~------phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~ 171 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKG------IHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVA 171 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCS------EEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCC------CcceeeeecC-CCcEEEEecccccccCCCCccccccc
Confidence 38888 4444 8889999999998877665544322 367777 4 7 888887774
Q ss_pred -CCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC------------------------------
Q psy6213 72 -TNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG------------------------------ 120 (330)
Q Consensus 72 -~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~------------------------------ 120 (330)
.++.+.+.|.++ .+...++.--. ....++++| +++++++.+.+.
T Consensus 172 ~~~~~vtvID~~t---~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 172 NYVNVFTAVDADK---WEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp GEEEEEEEEETTT---TEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred ccCceEEEEECCC---CeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 345789999987 55555554322 456678888 788887777542
Q ss_pred --------cEEEEEeec--Cce-eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCc-----------ccee
Q psy6213 121 --------TMRLFDIRC--QES-TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE-----------KCFY 178 (330)
Q Consensus 121 --------~i~i~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~-----------~~~~ 178 (330)
.|.+.|..+ ++. +..+.. .....++.++|||+++++++..+.+|.++|+.+.. ....
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 366666665 333 334432 23466799999999988888889999999998632 1122
Q ss_pred eeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC---------ccccceeccccce------EEEEEcCCCCeEEE
Q psy6213 179 QFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK---------PSLEYSINTIASV------SRIKWRPQRKFHLA 243 (330)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~v------~~~~~~~~~~~l~~ 243 (330)
... -......++|+|+|...++.-.|++|.+||+... ............. ..+.++|||++|++
T Consensus 326 ~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 326 EPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp CCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred EcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 222 2346789999999955556668999999998762 1111122211111 12355899999888
Q ss_pred EeecccCCe----------EEEEEccCCC
Q psy6213 244 SCSLVVDSS----------VNVWDIRRPY 262 (330)
Q Consensus 244 ~~~~~~~~~----------i~i~d~~~~~ 262 (330)
+...+.|.- -.++|+..++
T Consensus 405 ~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 405 LSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 776322332 2889996655
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-09 Score=85.80 Aligned_cols=231 Identities=9% Similarity=0.015 Sum_probs=142.9
Q ss_pred cEEEEEcCCCcEEEEECCCCCCCc--eeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCC
Q psy6213 65 NHIATGATNGAVVVWNLGQISRSK--QERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES 142 (330)
Q Consensus 65 ~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 142 (330)
.+|+.+.. +.|+.++++...... ....+......+..++|++.++.++++-..++.|..+++...............
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34555543 478888887522111 011222223567899999844555556566789999998765543333333356
Q ss_pred eEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec---CCcEEEEeCCCCccc
Q psy6213 143 VRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR---DKTIKVWDLSIKPSL 219 (330)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~ 219 (330)
...++++|++.+++++-...+.|.++++... ...............++++|++..|+.+.. .+.|..+++......
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGT-QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCC-CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 8899999987766777677789999998742 221222222246789999997665555543 368888887654222
Q ss_pred cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 220 EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 220 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
............++++|++..++++.. ..+.|..+|+..... ...... .....+++.. ++.++++....+.|.++
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~-~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGR-RKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEE-EEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCce-EEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEE
Confidence 111122356889999999887777776 688999999875432 222222 2345677664 34444444456788888
Q ss_pred ecc
Q psy6213 300 KNI 302 (330)
Q Consensus 300 ~~~ 302 (330)
+..
T Consensus 235 d~~ 237 (267)
T 1npe_A 235 DLA 237 (267)
T ss_dssp ETT
T ss_pred eCC
Confidence 754
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-11 Score=99.11 Aligned_cols=223 Identities=9% Similarity=-0.008 Sum_probs=140.6
Q ss_pred CcccceEEEEeeCCCeeecC-------CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc---C
Q psy6213 3 YLSPVHKHGLKADNGLAQPS-------RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA---T 72 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g-------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~ 72 (330)
|...+.+++++++|++.++. ++.|.+||+.+++....+.+..... .....+..++++|.++..+++.. .
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~-~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT-LSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS-CTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc-ccccccceEEEecCCCEEEEEcCccCC
Confidence 45678999999999884443 3799999999888766665432111 11123488999983344445554 5
Q ss_pred CCcEEEEECCCCCCCceeEEeccccccee-EEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 73 NGAVVVWNLGQISRSKQERVFNDHKRTVN-KVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
++.|.+||+.+ .+....+..|..... ...+.+ ++..+.+.+.++.+..|. ..+..++|+|+
T Consensus 144 ~~~i~v~d~~~---g~~~r~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~d 205 (343)
T 2qe8_A 144 KAALIRVDLQT---GLAARVLQGYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAE 205 (343)
T ss_dssp GCEEEEEETTT---CCEEEECTTCTTTSCCSCCCEE-TTEECBEECTTSCEECCC--------------CCEEEEEECTT
T ss_pred CCeEEEEECCC---CCEEEEecCCCcccccccceeE-CCEEEEeccCCCceecee--------------cccceeEeccC
Confidence 78899999987 455555544322111 134454 566677777777775543 23678999999
Q ss_pred CCcEEEEEecCC-cEEEEecCC--Cc-----ccee--eeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc
Q psy6213 152 SPYAFASVSENG-TIQQWDVRR--PE-----KCFY--QFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY 221 (330)
Q Consensus 152 ~~~~~~~~~~dg-~i~i~d~~~--~~-----~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 221 (330)
++. ++.+...+ .+..++... .. +... ...++.+....++++++|.++++...++.|.+||..+++....
T Consensus 206 g~~-ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~ 284 (343)
T 2qe8_A 206 NEW-LYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL 284 (343)
T ss_dssp SCE-EEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CCE-EEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEE
Confidence 985 55554444 565555321 00 0001 1113344567899999999999988999999999844432111
Q ss_pred e-eccccceEEEEEcCCCCeEEEEe
Q psy6213 222 S-INTIASVSRIKWRPQRKFHLASC 245 (330)
Q Consensus 222 ~-~~~~~~v~~~~~~~~~~~l~~~~ 245 (330)
. ......+..++|.+++..++++.
T Consensus 285 ~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 285 VTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EECGGGSCEEEEEECTTSCEEEEEC
T ss_pred EECCceecCCeeEECCCCcEEEEeC
Confidence 1 12245689999999987544443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-10 Score=94.83 Aligned_cols=262 Identities=9% Similarity=-0.017 Sum_probs=158.9
Q ss_pred ceEEEEeeCCCeeecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC
Q psy6213 7 VHKHGLKADNGLAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR 86 (330)
Q Consensus 7 v~~~~~s~~~~~~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 86 (330)
+.++...++|.+.++.++ +..+|. +++....+...... ....... +..+..++.++.+..+|...
T Consensus 62 ~~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~~~~~~~~-------~~~~~~~---~~~l~v~t~~~~l~~~d~~g--- 126 (330)
T 3hxj_A 62 ECRPSIGKDGTIYFGSDK-VYAINP-DGTEKWRFDTKKAI-------VSDFTIF---EDILYVTSMDGHLYAINTDG--- 126 (330)
T ss_dssp EECCEETTTTEECCSSCE-EEEECC-CGGGGGGSCC------------CCEEEE---TTEEEEECTTSEEEEECTTS---
T ss_pred ccceEEecCCcEEEecCc-EEEECC-CCcEEEEEECCCCc-------ccCceEE---CCEEEEEecCCEEEEEcCCC---
Confidence 345555556655444433 666765 44433222221110 1122221 45677788888899998762
Q ss_pred CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEE
Q psy6213 87 SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQ 166 (330)
Q Consensus 87 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~ 166 (330)
+...........+.++...+ ++. +..++.++.|..+|.. ++....+......+.++...+++. +..++ +.|.
T Consensus 127 -~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~--l~v~t--~~l~ 198 (330)
T 3hxj_A 127 -TEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT--IYFGS--DKVY 198 (330)
T ss_dssp -CEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC--EEEES--SSEE
T ss_pred -CEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE--EEEEe--CEEE
Confidence 23333333444556666653 444 6677888999999998 777666665556677777877776 44555 8899
Q ss_pred EEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEee
Q psy6213 167 QWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCS 246 (330)
Q Consensus 167 i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 246 (330)
.+| .+ +............+.++...++|. +..++.++.+..+|.. ++...........+..+...+++. +.++.
T Consensus 199 ~~d-~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t- 272 (330)
T 3hxj_A 199 AIN-PD-GTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GTEKWRFKTGKRIESSPVIGNTDT-IYFGS- 272 (330)
T ss_dssp EEC-TT-SCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEEC-
T ss_pred EEC-CC-CcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-CCEeEEeeCCCCccccceEcCCCe-EEEec-
Confidence 999 54 444444444556688888888875 5556777888888753 333322222223334456666776 45554
Q ss_pred cccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 247 LVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 247 ~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.++.|..+|. +++. ..........+.++...+++. |..++.+|.+++....
T Consensus 273 --~~ggl~~~d~-~g~~-~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 273 --YDGHLYAINP-DGTE-KWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp --TTCEEEEECT-TSCE-EEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred --CCCCEEEECC-CCcE-EEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 3889999996 4543 444444455677777777776 5568899999987543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.1e-13 Score=110.81 Aligned_cols=203 Identities=12% Similarity=0.061 Sum_probs=110.4
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCC-
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTE- 141 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~- 141 (330)
++..+++++.||.|..||..+ ++..-.+.. +.+.+..+.+ ++..+++++.|+.|+.||.++++.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t---G~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT---GSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT---CCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCC---CCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 578899999999999999988 566655554 4454444554 666778888999999999998887665543211
Q ss_pred CeE-EEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc
Q psy6213 142 SVR-DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE 220 (330)
Q Consensus 142 ~v~-~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 220 (330)
.+. +..+. .+. .+++++.++.++.||.++ ++.+..+..+. ...++|++..+++++.|+.|+.||.++++...
T Consensus 82 ~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 82 LVQASPCRS-SDG-ILYMGKKQDIWYVIDLLT-GEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp HHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred ccccCceEe-cCC-EEEEEeCCCEEEEEECCC-CcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 010 00111 233 477788899999999998 44444444332 23456788899999999999999999886543
Q ss_pred ceeccccceEEEEEcCCC---CeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEE-EEEecCCC
Q psy6213 221 YSINTIASVSRIKWRPQR---KFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSG-LAWRGDPQ 285 (330)
Q Consensus 221 ~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~ 285 (330)
..... ......+.++. ..++++. .+|.++.||.++++. +-... ...++.. ..+++++.
T Consensus 155 ~~~~~--~~~~~~~~~~~~~~~~v~~~~---~dg~v~a~d~~tG~~-~W~~~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 155 NATYF--DYAASLPEDDVDYKMSHFVSN---GDGLVVTVDSESGDV-LWIQN-YASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEEE--EECCBCCCCCTTCCCCEEEEE---TSCEEEEECTTTCCE-EEEEE-CSSCEEEEEECTTSSC
T ss_pred eEecc--cccCccccCCccccceEEEEC---CCCEEEEEECCCCcE-EEEec-CCCceEEEEEecCCce
Confidence 32211 12223344432 3345544 499999999998875 44443 2344443 34445554
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-11 Score=97.51 Aligned_cols=259 Identities=10% Similarity=-0.003 Sum_probs=160.2
Q ss_pred EEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC
Q psy6213 9 KHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS 87 (330)
Q Consensus 9 ~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 87 (330)
+..+..+|.+.+++ ++.|..|| .+++......... ..+.++...+ ++ .+..++.+ +..+|. + +
T Consensus 24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~-------~~~~~~~~~~-~g-~l~v~t~~--l~~~d~-~---g 87 (330)
T 3hxj_A 24 SPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGE-------IIECRPSIGK-DG-TIYFGSDK--VYAINP-D---G 87 (330)
T ss_dssp CCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGG-------EEEECCEETT-TT-EECCSSCE--EEEECC-C---G
T ss_pred CceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCC-------CcccceEEec-CC-cEEEecCc--EEEECC-C---C
Confidence 44555677776666 88899999 7777654433221 1135556654 44 45556555 888875 3 2
Q ss_pred ceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEE
Q psy6213 88 KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQ 167 (330)
Q Consensus 88 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i 167 (330)
+....+...........+. +..+..++.++.|..+|.+ ++...........+.++...+++. +..++.++.|..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~ 161 (330)
T 3hxj_A 88 TEKWRFDTKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYA 161 (330)
T ss_dssp GGGGGSCC-----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEE
T ss_pred cEEEEEECCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEE
Confidence 2222222222223333333 4567778888999999988 776666665555566777777775 667788899999
Q ss_pred EecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeec
Q psy6213 168 WDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSL 247 (330)
Q Consensus 168 ~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 247 (330)
+|.. ++....+......+.++...+++.+.+ ++ +.+..+| .+++...........+.++...++|.. .++.
T Consensus 162 ~d~~--g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t-- 232 (330)
T 3hxj_A 162 INPD--GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTS-- 232 (330)
T ss_dssp ECTT--SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEE--
T ss_pred ECCC--CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEc--
Confidence 9987 333444444455677788877877544 44 7899999 555444333333456778888888863 5554
Q ss_pred ccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 248 VVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 248 ~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.++.|..+|. ++.. +.........+..+...+++ .|..++.+|.|..++..
T Consensus 233 -~~~gl~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 233 -LDGHLYAINP-DGTE-KWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD 283 (330)
T ss_dssp -TTTEEEEECT-TSCE-EEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT
T ss_pred -CCCeEEEECC-CCCE-eEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC
Confidence 3788888874 3433 34444444444556665555 46667788888888753
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.5e-10 Score=99.35 Aligned_cols=260 Identities=9% Similarity=0.103 Sum_probs=158.1
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceee-eeecccCCcEEEEEcC------CCcEEEEECCCCCC
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCND-VAWSCIEENHIATGAT------NGAVVVWNLGQISR 86 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~ 86 (330)
+++.++.. |+.|..+|..+|+..-.+........ ...+.. ... .+..+++++. +|.|..+|..+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~--~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~t--- 199 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKG--SLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAET--- 199 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCS--SCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTT---
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCc--CcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCC---
Confidence 34445555 99999999999987765543300000 000111 111 2345555543 68999999988
Q ss_pred CceeEEecccc--------------------------------cceeEEEEEecCCCEEEEEecCC--------------
Q psy6213 87 SKQERVFNDHK--------------------------------RTVNKVSFHYVESNWLISGSQDG-------------- 120 (330)
Q Consensus 87 ~~~~~~~~~~~--------------------------------~~i~~i~~~~~~~~~l~~~~~d~-------------- 120 (330)
++.+-.+.... .....+++.| ++++++.+..++
T Consensus 200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd 278 (677)
T 1kb0_A 200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGD 278 (677)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCC
T ss_pred CcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCC
Confidence 45444332211 1113577887 677788776653
Q ss_pred -----cEEEEEeecCceeeeeecCC---------CCeEEEEEcCCCC--cEEEEEecCCcEEEEecCCCccceeeeccCC
Q psy6213 121 -----TMRLFDIRCQESTKIFHSNT---------ESVRDVEFNPHSP--YAFASVSENGTIQQWDVRRPEKCFYQFTAHS 184 (330)
Q Consensus 121 -----~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 184 (330)
.|..+|.++++.+-.++... .....+....+|+ ..++.++.+|.++++|.+++ +.+..+....
T Consensus 279 ~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~~~ 357 (677)
T 1kb0_A 279 NLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG-KFISAKNFVP 357 (677)
T ss_dssp CTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSC
T ss_pred CeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC-CEeccccccc
Confidence 59999999999887765421 1122233334562 36888999999999999884 4433222110
Q ss_pred -----------CCe------------------------EEEEEcCCCCEEEEEecC------------------------
Q psy6213 185 -----------GPI------------------------FACDWHPEHAWLATASRD------------------------ 205 (330)
Q Consensus 185 -----------~~i------------------------~~~~~~~~~~~l~~~~~d------------------------ 205 (330)
.++ ..++++|++.++++...+
T Consensus 358 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 437 (677)
T 1kb0_A 358 VNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSG 437 (677)
T ss_dssp CSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGG
T ss_pred cCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccc
Confidence 001 257889988888776432
Q ss_pred -------------------CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccce
Q psy6213 206 -------------------KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA 266 (330)
Q Consensus 206 -------------------g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~ 266 (330)
|.|..||+.+++.... ..+..+.....+...+..++++ + .++.+++||.++++. +.
T Consensus 438 ~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~-~~~~~~~~~g~~~~~g~~v~~g-~--~dg~l~a~D~~tG~~-lw 512 (677)
T 1kb0_A 438 TGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS-VEHVSPWNGGTLTTAGNVVFQG-T--ADGRLVAYHAATGEK-LW 512 (677)
T ss_dssp GTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE-EEESSSCCCCEEEETTTEEEEE-C--TTSEEEEEETTTCCE-EE
T ss_pred cccccccccccccCCCCCccEEEEEeCCCCcEEee-cCCCCCCcCcceEeCCCEEEEE-C--CCCcEEEEECCCCce-ee
Confidence 7799999998854433 3333444445566667665554 4 699999999999987 55
Q ss_pred EeecCC-CCeEEEEEecCCCEEEE
Q psy6213 267 SFTEHK-DVVSGLAWRGDPQLFIA 289 (330)
Q Consensus 267 ~~~~~~-~~v~~~~~~~~~~~l~s 289 (330)
.+.... ..-.-+.|.++|+.+++
T Consensus 513 ~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 513 EAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEECSSCCCSCCEEEEETTEEEEE
T ss_pred eeeCCCCcccCCEEEEeCCEEEEE
Confidence 554332 22344566678865444
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-09 Score=97.75 Aligned_cols=276 Identities=13% Similarity=0.099 Sum_probs=169.9
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeeccccc----cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCce
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNIN----LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQ 89 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 89 (330)
++.+++++ ++.|.-+|..+|+.+-.+......... .......+++ .+..+++++.|+.|..+|..+ ++.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~---~~~~v~v~~~dg~l~alD~~t---G~~ 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL---WKGKVYVGAWDGRLIALDAAT---GKE 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE---ETTEEEEECTTSEEEEEETTT---CCE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE---ECCEEEEEcCCCEEEEEECCC---CCE
Confidence 44445555 889999999999877665544321100 0000122333 456788888999999999988 565
Q ss_pred eEEeccc-c----cceeEEEEEecCCCEEEEEec------CCcEEEEEeecCceeeeeecCCCC----------------
Q psy6213 90 ERVFNDH-K----RTVNKVSFHYVESNWLISGSQ------DGTMRLFDIRCQESTKIFHSNTES---------------- 142 (330)
Q Consensus 90 ~~~~~~~-~----~~i~~i~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~---------------- 142 (330)
+-.+... . ..+..--.. .+..+++++. ++.|+.+|.++++.+-.+......
T Consensus 151 ~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 151 VWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp EEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred EeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 5555433 1 112211111 2344555543 789999999999988766532211
Q ss_pred ----------------eEEEEEcCCCCcEEEEEecCC-------------------cEEEEecCCCccceeeecc--CC-
Q psy6213 143 ----------------VRDVEFNPHSPYAFASVSENG-------------------TIQQWDVRRPEKCFYQFTA--HS- 184 (330)
Q Consensus 143 ----------------v~~~~~~~~~~~~~~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~--~~- 184 (330)
...++++|++. +++.+..++ .|..+|.+++ +..-.++. |.
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG-~~~W~~~~~~~d~ 306 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG-KYKWHYQETPGDN 306 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTCC
T ss_pred ccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC-CEEEEEecCCCcc
Confidence 13577888887 566666553 4999999984 44433332 21
Q ss_pred ------CCeEEEEEcCCC---CEEEEEecCCcEEEEeCCCCccccceecc-----------ccce---------------
Q psy6213 185 ------GPIFACDWHPEH---AWLATASRDKTIKVWDLSIKPSLEYSINT-----------IASV--------------- 229 (330)
Q Consensus 185 ------~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~v--------------- 229 (330)
....-+....+| ..++.++.+|.++++|..+++.+...... ..++
T Consensus 307 wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ 386 (677)
T 1kb0_A 307 WDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV 386 (677)
T ss_dssp SCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred cccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEEC
Confidence 122223333467 68899999999999999998653322110 0011
Q ss_pred ---------EEEEEcCCCCeEEEEeec----------------------------------------ccCCeEEEEEccC
Q psy6213 230 ---------SRIKWRPQRKFHLASCSL----------------------------------------VVDSSVNVWDIRR 260 (330)
Q Consensus 230 ---------~~~~~~~~~~~l~~~~~~----------------------------------------~~~~~i~i~d~~~ 260 (330)
..++++|++..+++.... ...+.|..||+.+
T Consensus 387 P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t 466 (677)
T 1kb0_A 387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA 466 (677)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT
T ss_pred cCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC
Confidence 146889988865554320 0027899999999
Q ss_pred CCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 261 PYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
++. +-... +..++.+..+..++..++.++.||.+++|+..
T Consensus 467 G~~-~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 467 QKA-AWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp TEE-EEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CcE-EeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 875 33333 33445556677788889999999999999853
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-09 Score=98.25 Aligned_cols=275 Identities=10% Similarity=0.092 Sum_probs=165.8
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeecccccccc---c-eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCce
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNF---S-CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQ 89 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~-v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 89 (330)
++.+++++ ++.|.-+|..+|+.+-.+............ . ...++. .+..+++++.|+.|..+|..+ ++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~v~v~~~dg~l~AlDa~T---G~~ 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV---WKGKVYVGVLDGRLEAIDAKT---GQR 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTT---CCE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE---ECCEEEEEccCCEEEEEECCC---CCE
Confidence 44445555 889999999999877666543321110000 0 011222 456788888999999999988 555
Q ss_pred eEEeccc--c---cceeE-EEEEecCCCEEEEEe------cCCcEEEEEeecCceeeeeecCC-----------------
Q psy6213 90 ERVFNDH--K---RTVNK-VSFHYVESNWLISGS------QDGTMRLFDIRCQESTKIFHSNT----------------- 140 (330)
Q Consensus 90 ~~~~~~~--~---~~i~~-i~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~----------------- 140 (330)
+-.+... . ..+.+ ..+. ++ .+++++ .++.|+.||.++++.+-.+....
T Consensus 144 ~W~~~~~~~~~~~~~~~~sP~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~ 220 (689)
T 1yiq_A 144 AWSVDTRADHKRSYTITGAPRVV--NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAK 220 (689)
T ss_dssp EEEEECCSCTTSCCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHT
T ss_pred eeeecCcCCCCCCccccCCcEEE--CC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccc
Confidence 4443321 1 11111 1111 34 444443 37899999999999876664210
Q ss_pred --------------CCeEEEEEcCCCCcEEEEEecCCc-------------------EEEEecCCCccceeeecc--CC-
Q psy6213 141 --------------ESVRDVEFNPHSPYAFASVSENGT-------------------IQQWDVRRPEKCFYQFTA--HS- 184 (330)
Q Consensus 141 --------------~~v~~~~~~~~~~~~~~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~--~~- 184 (330)
.....++++|+.. +++.+..++. |..+|.+++ +.+-.++. |.
T Consensus 221 ~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG-~~~W~~~~~~~d~ 298 (689)
T 1yiq_A 221 TWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG-EYVWHYQTTPGDA 298 (689)
T ss_dssp TCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC-CEEEEEESSTTCC
T ss_pred ccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC-ceeEeeecCCccc
Confidence 0112578888877 6777777653 999999984 44443332 21
Q ss_pred ------CCeEEEEEcCCCC---EEEEEecCCcEEEEeCCCCccccceecc----------------------------cc
Q psy6213 185 ------GPIFACDWHPEHA---WLATASRDKTIKVWDLSIKPSLEYSINT----------------------------IA 227 (330)
Q Consensus 185 ------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------------~~ 227 (330)
.+........+|+ .++.++.+|.++++|.++++.+...... ..
T Consensus 299 wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~ 378 (689)
T 1yiq_A 299 WDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR 378 (689)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred ccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence 1222222223564 7889999999999999998654111000 00
Q ss_pred -----------ceEEEEEcCCCCeEEEEeec------------------------------------------ccCCeEE
Q psy6213 228 -----------SVSRIKWRPQRKFHLASCSL------------------------------------------VVDSSVN 254 (330)
Q Consensus 228 -----------~v~~~~~~~~~~~l~~~~~~------------------------------------------~~~~~i~ 254 (330)
.-..++++|+...+++.... ..+|.|+
T Consensus 379 ~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~ 458 (689)
T 1yiq_A 379 NLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLI 458 (689)
T ss_dssp EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEE
T ss_pred eEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEE
Confidence 01126888887765554220 0137899
Q ss_pred EEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 255 VWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 255 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.||+.+++. +-....+ .++..-.+...+.+++.++.||.++.|+..
T Consensus 459 A~D~~tG~~-~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 459 AWDPVKQQA-AWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp EEETTTTEE-EEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred EEECCCCCe-EeEccCC-CCccCccceECCCEEEEECCCCcEEEEECC
Confidence 999999975 4444433 334444566678899999999999999843
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-08 Score=81.00 Aligned_cols=241 Identities=12% Similarity=0.002 Sum_probs=144.2
Q ss_pred ceEEEEeeCCCeeecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC
Q psy6213 7 VHKHGLKADNGLAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR 86 (330)
Q Consensus 7 v~~~~~s~~~~~~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 86 (330)
-+|.+..+++.++.+..+.|+..+++......... .. ..+..++|.+.++.++.+-...+.|..+++..
T Consensus 36 ~~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~-------~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g--- 104 (349)
T 3v64_C 36 RSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN-------NL-ENAIALDFHHRRELVFWSDVTLDRILRANLNG--- 104 (349)
T ss_dssp SCEEESSSCCEEEEECBSCEEEECTTSCCEEEEEC-------SC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred CcccccccCceeEeecccceEEEeCCCCeeEEeec-------CC-CceEEEEEeccccEEEEEeccCCceEEEecCC---
Confidence 34444444322233334556666666544322211 11 12478999984555555556678899999876
Q ss_pred CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecC-CcE
Q psy6213 87 SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN-GTI 165 (330)
Q Consensus 87 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-g~i 165 (330)
................+++.+.+++++++-...+.|.+.+++.......+...-.....++++|.+.+++++-... +.|
T Consensus 105 ~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 105 SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence 2222222222345678888875566666766678999999875443333333445678999999877666665555 788
Q ss_pred EEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEE-ecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEE
Q psy6213 166 QQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATA-SRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLAS 244 (330)
Q Consensus 166 ~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 244 (330)
..+++... .........-...+.++++|++..|..+ ...+.|..+|+..................+++. .+ .++.+
T Consensus 185 ~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~t 261 (349)
T 3v64_C 185 EASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWT 261 (349)
T ss_dssp EEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEE
T ss_pred EEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEe
Confidence 88888742 2222222234467899999866655544 456789999987643322222234456777773 33 45666
Q ss_pred eecccCCeEEEEEccCCCc
Q psy6213 245 CSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 245 ~~~~~~~~i~i~d~~~~~~ 263 (330)
.. ..+.|..++..+++.
T Consensus 262 d~--~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 262 DW--HTKSINSANKFTGKN 278 (349)
T ss_dssp ET--TTTEEEEEETTTCCS
T ss_pred cC--CCCeEEEEEccCCCc
Confidence 55 588898888655544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-10 Score=97.36 Aligned_cols=221 Identities=12% Similarity=0.117 Sum_probs=148.8
Q ss_pred CCcEEEEEc-CCCcEEEEECCCCCCCceeEEecc-cccceeEEEE-E-ecCCCEEEEEe------------------cCC
Q psy6213 63 EENHIATGA-TNGAVVVWNLGQISRSKQERVFND-HKRTVNKVSF-H-YVESNWLISGS------------------QDG 120 (330)
Q Consensus 63 ~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~-~~~~i~~i~~-~-~~~~~~l~~~~------------------~d~ 120 (330)
+++++++.. .++.|.+.|+.+ .+....+.- .......+++ . | +++++++++ .++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t---~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDV---MKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTT---TEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCC---ceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCc
Confidence 455555544 456799999998 665553332 2245778887 4 7 788888774 346
Q ss_pred cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecC-------------------------------------C
Q psy6213 121 TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN-------------------------------------G 163 (330)
Q Consensus 121 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-------------------------------------g 163 (330)
.+.+.|..+.+...++.... ....++++|++++++++...+ +
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred eEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 79999999988888877433 456788999999755554332 2
Q ss_pred cEEEEecCC--CccceeeeccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCcc-----------ccceeccccce
Q psy6213 164 TIQQWDVRR--PEKCFYQFTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPS-----------LEYSINTIASV 229 (330)
Q Consensus 164 ~i~i~d~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-----------~~~~~~~~~~v 229 (330)
.|.+.|.++ ....+..+.. .....++.++|||+++++++ .+.+|.++|+.+.+. ...........
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 366667665 1111233332 34567899999999877666 678899999986521 22233445678
Q ss_pred EEEEEcCCCCeEEEEeecccCCeEEEEEccCC---------CccceEeecCCCCe-----EEEEEecCCCEEEEeec
Q psy6213 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP---------YIPLASFTEHKDVV-----SGLAWRGDPQLFIASSR 292 (330)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~~ 292 (330)
..++|+|+| +++++.. .+++|.+||+... ...+..+..|-.+- .++..+|||++|+++..
T Consensus 334 ~h~aF~~dG-~aY~t~~--ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 334 LHTAFDGRG-NAYTSLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEEECTTS-EEEEEET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred ceEEECCCC-eEEEEEe--cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 999999999 6677776 7999999999761 22356666665432 12245789999998754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-12 Score=106.70 Aligned_cols=200 Identities=12% Similarity=0.040 Sum_probs=104.7
Q ss_pred CCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEe
Q psy6213 16 NGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVF 93 (330)
Q Consensus 16 ~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 93 (330)
+.. ++++ |+.|+.||..+|+..-.+.. +. +.+..+.+ ++..+++++.||.|+.||..+ ++....+
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~-------~~s~p~~~-~g~~~v~~s~dg~l~a~d~~t---G~~~w~~ 75 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DP-------VLQVPTHV-EEPAFLPDPNDGSLYTLGSKN---NEGLTKL 75 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CC-------SCCCC------CCEEECTTTCCEEEC--------CCSEEC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CC-------ceecceEc-CCCEEEEeCCCCEEEEEECCC---Cceeeee
Confidence 444 5555 99999999999987766544 22 23334444 677888888999999999977 4443333
Q ss_pred ccccc-cee-EEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecC
Q psy6213 94 NDHKR-TVN-KVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR 171 (330)
Q Consensus 94 ~~~~~-~i~-~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~ 171 (330)
..+.. .+. ...+. .+..+++++.++.++.||.++++.+..+..+. ...++|++. .+++++.++.|+.||.+
T Consensus 76 ~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 76 PFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTK 148 (369)
T ss_dssp SCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSS
T ss_pred eccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCC-EEEEEecCCEEEEEECC
Confidence 32211 111 11111 34567888889999999999999887776443 234566666 58888889999999998
Q ss_pred CCccceeeeccCCCCeEEEEEcCCC---CEEEEEecCCcEEEEeCCCCccccceeccccceE-EEEEcCCCC
Q psy6213 172 RPEKCFYQFTAHSGPIFACDWHPEH---AWLATASRDKTIKVWDLSIKPSLEYSINTIASVS-RIKWRPQRK 239 (330)
Q Consensus 172 ~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~ 239 (330)
++ +.+-.+..+. .....+.++. ..+++++.||.++.||.++++..... ....++. ...+++++.
T Consensus 149 tG-~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~-~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 149 TR-ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ-NYASPVVAFYVWQREGL 216 (369)
T ss_dssp SS-SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE-ECSSCEEEEEECTTSSC
T ss_pred CC-CEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe-cCCCceEEEEEecCCce
Confidence 84 4333332111 1223334332 45777889999999999988554332 2334443 344555654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-08 Score=85.57 Aligned_cols=257 Identities=7% Similarity=0.021 Sum_probs=153.2
Q ss_pred eCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEE
Q psy6213 14 ADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERV 92 (330)
Q Consensus 14 ~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 92 (330)
.++..+++. ++.|..+|.++++..-......... ..... .+..+++++.++.+..+|..+ ++....
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~-------~~p~~---~~~~v~v~~~~g~l~~~d~~t---G~~~W~ 168 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL-------SRPVV---SDGLVLIHTSNGQLQALNEAD---GAVKWT 168 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC-------SCCEE---ETTEEEEECTTSEEEEEETTT---CCEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE-------cCCEE---ECCEEEEEcCCCeEEEEECCC---CcEEEE
Confidence 345555555 9999999999988765544332110 11112 345778888899999999987 454444
Q ss_pred ecccccce-----eEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCC----eE---EEEEcC--CCCcEEEE
Q psy6213 93 FNDHKRTV-----NKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTES----VR---DVEFNP--HSPYAFAS 158 (330)
Q Consensus 93 ~~~~~~~i-----~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----v~---~~~~~~--~~~~~~~~ 158 (330)
........ ..... .+..++.++.++.+..+|..+++.+......... +. .+.-.| .+. .++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~v~~ 244 (376)
T 3q7m_A 169 VNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNG-VVFA 244 (376)
T ss_dssp EECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETT-EEEE
T ss_pred EeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECC-EEEE
Confidence 43221111 12222 2456778888999999999999887666532110 00 000111 133 4777
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecc-ccceEEEEEcCC
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRPQ 237 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~ 237 (330)
++.++.+..+|.+++ +...... ......+.. ++..++.++.++.+..+|..+++........ ..........
T Consensus 245 ~~~~g~l~~~d~~tG-~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~-- 317 (376)
T 3q7m_A 245 LAYNGNLTALDLRSG-QIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY-- 317 (376)
T ss_dssp ECTTSCEEEEETTTC-CEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--
T ss_pred EecCcEEEEEECCCC-cEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--
Confidence 788999999999874 3333332 223444444 3667888888999999999988654333211 1122222222
Q ss_pred CCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEE-EEEecCCCEEEEeecCCeEeeee
Q psy6213 238 RKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSG-LAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+..++++. .+|.+..+|..+++. +.........+.. ... .+..|+.++.+|.|+.|+
T Consensus 318 ~~~l~v~~---~~g~l~~~d~~tG~~-~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 318 NGNLVVGD---SEGYLHWINVEDGRF-VAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEEC---TTSEEEEEETTTCCE-EEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEe---CCCeEEEEECCCCcE-EEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 34445554 489999999999875 4444432333322 222 245788889999999885
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.1e-09 Score=81.37 Aligned_cols=193 Identities=9% Similarity=0.055 Sum_probs=133.0
Q ss_pred eeeeecccCCcEEEEEcC--CCcEEEEECCCCCCCceeEEecccc-cceeEEEEEecCCCEEEEEecCCcEEEEEeecCc
Q psy6213 55 NDVAWSCIEENHIATGAT--NGAVVVWNLGQISRSKQERVFNDHK-RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE 131 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 131 (330)
..++|+| ++.++++.+. ++.|.++|+.+ ++....+.... .....+++. ++.+.++.-.++.+.++|..+.+
T Consensus 24 ~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~t---g~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 24 QGLVYAE-NDTLFESTGLYGRSSVRQVALQT---GKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp EEEEECS-TTEEEEEECSTTTCEEEEEETTT---CCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred ccEEEeC-CCeEEEECCCCCCCEEEEEECCC---CCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 6899998 6655554443 57899999998 56665554211 222345554 45555666678999999999999
Q ss_pred eeeeeecC-CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCC-----CCeEEEEEcCCCCEEEEEecC
Q psy6213 132 STKIFHSN-TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHS-----GPIFACDWHPEHAWLATASRD 205 (330)
Q Consensus 132 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~d 205 (330)
.+.++... .. ...++++++.+++ +..++.|.++|..+ .+....+.-.. ..++.+.|. ++...+....+
T Consensus 98 v~~~i~~g~~~---g~glt~Dg~~l~v-s~gs~~l~viD~~t-~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~ 171 (266)
T 2iwa_A 98 NIKNFTHQMKD---GWGLATDGKILYG-SDGTSILYEIDPHT-FKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT 171 (266)
T ss_dssp EEEEEECCSSS---CCEEEECSSSEEE-ECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred EEEEEECCCCC---eEEEEECCCEEEE-ECCCCeEEEEECCC-CcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence 98888644 22 2346678886554 45688999999987 44444444211 236788888 67655555567
Q ss_pred CcEEEEeCCCCccccceecc-------------ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 206 KTIKVWDLSIKPSLEYSINT-------------IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 206 g~i~i~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
+.|.+.|..+++......-. ......++|+|+++.+++++. ..+.+...++...
T Consensus 172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk--~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK--LWPKLFEIKLHLV 238 (266)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--TCSEEEEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--CCCeEEEEEEecc
Confidence 89999999998553332211 135689999999998888887 6899999888654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-08 Score=81.66 Aligned_cols=241 Identities=10% Similarity=-0.020 Sum_probs=145.7
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeE
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNK 102 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~ 102 (330)
...|+..+++.......... . ..+..++|.+.++.++++-...+.|..+++.. ......+.........
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~-------~-~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g---~~~~~~~~~~~~~p~g 163 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNN-------L-ENAIALDFHHRRELVFWSDVTLDRILRANLNG---SNVEEVVSTGLESPGG 163 (386)
T ss_dssp BSCEEEECTTSCCCEEEECS-------C-SCEEEEEEETTTTEEEEEETTTTEEEEEETTS---CCEEEEECSSCSCCCC
T ss_pred CccceeeccCCCcEEEEecC-------C-CccEEEEEecCCCeEEEEeCCCCcEEEEecCC---CCcEEEEeCCCCCccE
Confidence 55677777765543322211 1 12478999984555555656678899999876 2222223323345577
Q ss_pred EEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecC-CcEEEEecCCCccceeeec
Q psy6213 103 VSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN-GTIQQWDVRRPEKCFYQFT 181 (330)
Q Consensus 103 i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~ 181 (330)
+++.+.++.++++-...+.|.+.+++.......+.........+++.|.+.+++++-... +.|..+++... .......
T Consensus 164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~ 242 (386)
T 3v65_B 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIAD 242 (386)
T ss_dssp EEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEEC
T ss_pred EEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEE
Confidence 888875566666666678899988875443333333445688999999887666665555 77888888742 2222222
Q ss_pred cCCCCeEEEEEcCCCCEEEE-EecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 182 AHSGPIFACDWHPEHAWLAT-ASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 182 ~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
..-...+.|+++|++..|+. -...+.|..+|+..................+++.. + .++.+.. ..+.|..++..+
T Consensus 243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~-~-~ly~td~--~~~~V~~~~~~~ 318 (386)
T 3v65_B 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFE-D-SLYWTDW--HTKSINSANKFT 318 (386)
T ss_dssp SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEET-T-EEEEEET--TTTEEEEEETTT
T ss_pred CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEEC-C-EEEEeeC--CCCeEEEEECCC
Confidence 33445789999986655544 45667899999875433222222344567788833 3 4566655 588999998666
Q ss_pred CCccceEeecCCCCeEEEEE
Q psy6213 261 PYIPLASFTEHKDVVSGLAW 280 (330)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~~~ 280 (330)
++. ...+........++++
T Consensus 319 G~~-~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 319 GKN-QEIIRNKLHFPMDIHT 337 (386)
T ss_dssp CCS-CEEEECSCSCCCCEEE
T ss_pred Ccc-eEEEccCCCCCceEEE
Confidence 654 4444333333444444
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.1e-09 Score=93.68 Aligned_cols=260 Identities=10% Similarity=0.097 Sum_probs=153.3
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeecccccccccee-eeeecccCCcEEEEEc------CCCcEEEEECCCCCC
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCN-DVAWSCIEENHIATGA------TNGAVVVWNLGQISR 86 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~ 86 (330)
+++.++.+ |+.|..+|.++|+..-.......... ...+. +... .+..++++. .+|.|..||..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~--~~~~~~sP~v---~~g~v~vg~~~~~~~~~g~v~a~D~~t--- 192 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKR--SYTITGAPRV---VNGKVVIGNGGAEFGVRGYVTAYDAET--- 192 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTS--CCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTT---
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCC--CccccCCcEE---ECCEEEEEeCCCccCCCCEEEEEECCC---
Confidence 44445555 99999999999987765544201000 00011 1111 133444443 368899999988
Q ss_pred CceeEEecc-------------------------------cccceeEEEEEecCCCEEEEEecCCc--------------
Q psy6213 87 SKQERVFND-------------------------------HKRTVNKVSFHYVESNWLISGSQDGT-------------- 121 (330)
Q Consensus 87 ~~~~~~~~~-------------------------------~~~~i~~i~~~~~~~~~l~~~~~d~~-------------- 121 (330)
++.+-.+.. ....-..+++.| +.++++.+..++.
T Consensus 193 G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~ 271 (689)
T 1yiq_A 193 GKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDN 271 (689)
T ss_dssp CCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCC
T ss_pred CcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCc
Confidence 444433321 001112577887 6788888877753
Q ss_pred -----EEEEEeecCceeeeeecC--C-------CCeEEEEEcCCCC--cEEEEEecCCcEEEEecCCCccceeeecc---
Q psy6213 122 -----MRLFDIRCQESTKIFHSN--T-------ESVRDVEFNPHSP--YAFASVSENGTIQQWDVRRPEKCFYQFTA--- 182 (330)
Q Consensus 122 -----i~i~d~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--- 182 (330)
|..+|.++++.+-.++.. . .+........+++ ..++.++.+|.++++|.+++ +.+...+.
T Consensus 272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~ 350 (689)
T 1yiq_A 272 LFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVPQ 350 (689)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCC
T ss_pred eeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC-CEecccccccc
Confidence 999999999988777642 1 1222222222342 25788899999999999884 33311100
Q ss_pred -------------------------CCC-----------CeEEEEEcCCCCEEEEEec----------------------
Q psy6213 183 -------------------------HSG-----------PIFACDWHPEHAWLATASR---------------------- 204 (330)
Q Consensus 183 -------------------------~~~-----------~i~~~~~~~~~~~l~~~~~---------------------- 204 (330)
... .-..++++|+..++++...
T Consensus 351 ~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (689)
T 1yiq_A 351 SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMY 430 (689)
T ss_dssp SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSC
T ss_pred ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccc
Confidence 000 0123788998888777632
Q ss_pred -----------------------CCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 205 -----------------------DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 205 -----------------------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
+|.|..||+.+++..... ....+.....+...+.. +..++ .|+.++.||.+++
T Consensus 431 ~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~-~~~~~~~~g~~~taggl-vf~gt--~dg~l~a~D~~tG 506 (689)
T 1yiq_A 431 QLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEV-PYVTIFNGGTLSTAGNL-VFEGS--ADGRVIAYAADTG 506 (689)
T ss_dssp CCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEE-EESSSCCCCEEEETTTE-EEEEC--TTSEEEEEETTTC
T ss_pred ccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEc-cCCCCccCccceECCCE-EEEEC--CCCcEEEEECCCC
Confidence 377999999988554333 22333333345555665 44455 6999999999999
Q ss_pred CccceEeecCCC-CeEEEEEecCCCEEEE
Q psy6213 262 YIPLASFTEHKD-VVSGLAWRGDPQLFIA 289 (330)
Q Consensus 262 ~~~~~~~~~~~~-~v~~~~~~~~~~~l~s 289 (330)
+. +..+....+ .-.-+.|..+|+..++
T Consensus 507 ~~-lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 507 EK-LWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CE-EEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cc-ceeeeCCCCcccCceEEEECCEEEEE
Confidence 87 555554322 2234667778874443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-08 Score=84.56 Aligned_cols=265 Identities=10% Similarity=0.033 Sum_probs=154.5
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeecccccc--ccce-eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCcee
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINL--NFSC-NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQE 90 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~v-~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 90 (330)
++..+++. ++.|..+|.++++..-............ ...+ ..+.. .+..+++++.++.|..+|..+ ++..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~t---G~~~ 126 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSD---GTVA 126 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTT---CCEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCC---CCEE
Confidence 44445555 8999999999988765554432110000 0011 11222 456778888899999999987 4554
Q ss_pred EEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCe-----EEEEEcCCCCcEEEEEecCCcE
Q psy6213 91 RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESV-----RDVEFNPHSPYAFASVSENGTI 165 (330)
Q Consensus 91 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~dg~i 165 (330)
-............... +..++.++.++.|..+|.++++.+.......... ...... + . .++.+..++.+
T Consensus 127 W~~~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~-~-~v~~g~~~g~l 200 (376)
T 3q7m_A 127 WQTKVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F-G-AAVVGGDNGRV 200 (376)
T ss_dssp EEEECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T-T-EEEECCTTTEE
T ss_pred EEEeCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C-C-EEEEEcCCCEE
Confidence 4443332222222222 4578888889999999999998877765432211 112222 2 3 47778889999
Q ss_pred EEEecCCCccceeeeccCC--C-----CeEEEEEcC--CCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcC
Q psy6213 166 QQWDVRRPEKCFYQFTAHS--G-----PIFACDWHP--EHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRP 236 (330)
Q Consensus 166 ~i~d~~~~~~~~~~~~~~~--~-----~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 236 (330)
..+|.+++ +..-...... + .+..+.-.| .+..++.++.++.+..+|.++++...... ......+...
T Consensus 201 ~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~~- 276 (376)
T 3q7m_A 201 SAVLMEQG-QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFIVD- 276 (376)
T ss_dssp EEEETTTC-CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEEEE-
T ss_pred EEEECCCC-cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCceEE-
Confidence 99999874 3333332111 0 000011111 24677888889999999999885543222 1223344443
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCccceEee-cCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT-EHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+..++++. .++.+..+|..+++. .-... .....+..... .+..|+.++.+|.|+.++..
T Consensus 277 -~~~l~~~~---~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 277 -GNRIYLVD---QNDRVMALTIDGGVT-LWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp -TTEEEEEE---TTCCEEEEETTTCCE-EEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred -CCEEEEEc---CCCeEEEEECCCCcE-EEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECC
Confidence 44455555 489999999998875 33333 11222333333 35678888899999998743
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.2e-09 Score=80.78 Aligned_cols=181 Identities=12% Similarity=0.188 Sum_probs=124.1
Q ss_pred eeEEEEEecCCCEEEEEecCC--cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccce
Q psy6213 100 VNKVSFHYVESNWLISGSQDG--TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF 177 (330)
Q Consensus 100 i~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 177 (330)
...+.|+ ++.++.+.+.+| .|+.+|+++++.+..+.... ........+.++.+++..-.++.+.+||..+ .+.+
T Consensus 45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t-~~~~ 120 (262)
T 3nol_A 45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRN-LRQV 120 (262)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTT-CCEE
T ss_pred cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECcc-CcEE
Confidence 4788887 567777777766 89999999999988887543 3333223334555677767789999999998 5666
Q ss_pred eeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecc--c---cceEEEEEcCCCCeEEEEeecccCCe
Q psy6213 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT--I---ASVSRIKWRPQRKFHLASCSLVVDSS 252 (330)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~~~~~~~~~~~ 252 (330)
.++.... .-..++ ++++.|+.+..++.|.++|..+.+......-. . ..++.+.|. +|+ +.+..- .++.
T Consensus 121 ~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w--~~~~ 193 (262)
T 3nol_A 121 RSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVW--QTNK 193 (262)
T ss_dssp EEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET--TSSE
T ss_pred EEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEc--cCCe
Confidence 6665422 212333 56777777776788999999987554332221 1 334567776 665 566665 5889
Q ss_pred EEEEEccCCCccceEeecC------------CCCeEEEEEecCCCEEEEeec
Q psy6213 253 VNVWDIRRPYIPLASFTEH------------KDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 253 i~i~d~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~s~~~ 292 (330)
|.+.|..+++. +..+... ....++|+|+|+++.|+..+.
T Consensus 194 I~vIDp~tG~V-~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 194 IVRIDPETGKV-TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEECTTTCBE-EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCcE-EEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999875 4444321 235799999998887777664
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.5e-09 Score=81.61 Aligned_cols=193 Identities=8% Similarity=0.090 Sum_probs=132.7
Q ss_pred ceEEEEeeCCCe-eecC---CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 7 VHKHGLKADNGL-AQPS---RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
...++|+||+.+ +++| ++.|.++|+.+++........... + ...+++. ++.+.++...++.+.++|..
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-----f-geGi~~~--g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-----F-GEGLTLL--NEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-----C-EEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-----c-eEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence 478999998877 6665 689999999999988776543221 1 1345554 34555566678899999998
Q ss_pred CCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCC-----CCeEEEEEcCCCCcEEE
Q psy6213 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNT-----ESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~ 157 (330)
+ .+.+..+...... ...+++ +++.++++..++.|.++|..+.+.+..+.... ..+..+.|. ++. +++
T Consensus 95 t---~~v~~~i~~g~~~--g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyv 166 (266)
T 2iwa_A 95 T---LSNIKNFTHQMKD--GWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWA 166 (266)
T ss_dssp T---TEEEEEEECCSSS--CCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEE
T ss_pred C---CcEEEEEECCCCC--eEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEE
Confidence 8 6666666432122 233555 45555555568899999999988877766322 136678888 564 666
Q ss_pred EEecCCcEEEEecCCCccceeeeccC-------------CCCeEEEEEcCCCCE-EEEEecCCcEEEEeCCCC
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFTAH-------------SGPIFACDWHPEHAW-LATASRDKTIKVWDLSIK 216 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~ 216 (330)
....++.|.+.|..+ ++.+..+... ....+.++|+|+++. ++++...+.+...++...
T Consensus 167 n~~~~~~V~vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 167 NIWQTDCIARISAKD-GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EETTSSEEEEEETTT-CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ecCCCCeEEEEECCC-CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 666788999999998 5555555421 135689999998865 555557788888888665
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.19 E-value=2e-07 Score=76.86 Aligned_cols=234 Identities=9% Similarity=-0.055 Sum_probs=146.7
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK 134 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 134 (330)
+|.+..+ +. .|+.+. ...|+..++.. ........ .......++|.+.++.++++-...+.|+.+++.......
T Consensus 37 ~C~~~~~-~~-~ll~~~-~~~I~~i~~~g---~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 37 SCKALGP-EP-VLLFAN-RIDIRQVLPHR---SEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp CEEESSS-CC-EEEEEC-BSCEEEECTTS---CCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccccccc-Cc-eeEeec-ccceEEEeCCC---CeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 4444444 33 444443 34577777765 23322233 334578999997455555565667889999987665444
Q ss_pred eeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEE-EEecC-CcEEEEe
Q psy6213 135 IFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLA-TASRD-KTIKVWD 212 (330)
Q Consensus 135 ~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d-g~i~i~d 212 (330)
...........+++.+.+..++++-...+.|.+.++... ...............++++|.+..|+ +-... +.|..++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC-ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 333333456789999877766777777788999998752 22222333345678999999655544 44444 7788888
Q ss_pred CCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeec
Q psy6213 213 LSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
+..................++++|++..|+.+-. ..+.|..+|+..... ............++++. ++.+.++-..
T Consensus 189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav~-~~~ly~td~~ 264 (349)
T 3v64_C 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHR-KAVISQGLPHPFAITVF-EDSLYWTDWH 264 (349)
T ss_dssp TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSC-EEEECSSCSSEEEEEEE-TTEEEEEETT
T ss_pred CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCce-EEEEeCCCCCceEEEEE-CCEEEEecCC
Confidence 8765332222223456889999998887777776 688999999875432 22233334456788883 4555555555
Q ss_pred CCeEeeee
Q psy6213 293 VSIIPRAK 300 (330)
Q Consensus 293 dg~i~iw~ 300 (330)
.+.|...+
T Consensus 265 ~~~V~~~~ 272 (349)
T 3v64_C 265 TKSINSAN 272 (349)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 66776664
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.7e-09 Score=79.26 Aligned_cols=180 Identities=9% Similarity=0.077 Sum_probs=124.6
Q ss_pred eeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceee
Q psy6213 100 VNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ 179 (330)
Q Consensus 100 i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~ 179 (330)
...+.|+ ++.++.+.+.+|.|+.+|+++++.+..+ ... ........+.++.+++..-.++.+.+||..+ .+.+.+
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~T-l~~~~t 131 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMP-PQRERT 131 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTT-TEEEEE
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCc-CcEEEE
Confidence 4688887 5788888888999999999999988877 333 3333223334555777777899999999998 566666
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec--c---ccceEEEEEcCCCCeEEEEeecccCCeEE
Q psy6213 180 FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN--T---IASVSRIKWRPQRKFHLASCSLVVDSSVN 254 (330)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~l~~~~~~~~~~~i~ 254 (330)
+... ..-..++ ++++.|+.+..++.|.++|..+.+......- . -..++.+.|. +|+ +.+..- .++.|.
T Consensus 132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw--~s~~I~ 204 (268)
T 3nok_A 132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW--HSSDVL 204 (268)
T ss_dssp EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET--TCSEEE
T ss_pred EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC--CCCeEE
Confidence 6642 2223444 5678888877789999999998855333222 1 1245677777 665 566665 588999
Q ss_pred EEEccCCCccceEeec-------------CCCCeEEEEEecCCCEEEEeec
Q psy6213 255 VWDIRRPYIPLASFTE-------------HKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 255 i~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
+.|..+++. +..+.. .....++|||+|+++.|+..+.
T Consensus 205 vIDp~TG~V-~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPATGTV-VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTCBE-EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEeCCCCcE-EEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999875 444432 1246799999997666665553
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.2e-07 Score=82.00 Aligned_cols=276 Identities=9% Similarity=0.062 Sum_probs=172.3
Q ss_pred cccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 4 LSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
...|.++...++|.+.++. ++.+.+||..+++.............-....|.++...+ ++.+. .|+.+ -|.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhheEcCC
Confidence 3468888888888884444 555888998876544322111000001123478888876 55544 45555 48889876
Q ss_pred CCCCCceeEEec-------ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec-------CCCCeEEEEE
Q psy6213 83 QISRSKQERVFN-------DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS-------NTESVRDVEF 148 (330)
Q Consensus 83 ~~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~ 148 (330)
+ ........ .....|.++...+ ++. |..|+.++-|..|+..+.... .+.. ....|.++..
T Consensus 291 ~---~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~ 364 (795)
T 4a2l_A 291 T---DSFASYSSNPVENGSLSQRSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVE 364 (795)
T ss_dssp T---TEEEEECCCTTSTTSCSSSCEEEEEECT-TSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEE
T ss_pred C---CeEEEEecCCCCCCCCCCCcEEEEEEeC-CcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEE
Confidence 5 33222111 1235688888775 444 666777778999987655422 2211 2356899998
Q ss_pred cCCCCcEEEEEecCCcEEEEecCCCccceeeec---------cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc
Q psy6213 149 NPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT---------AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL 219 (330)
Q Consensus 149 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 219 (330)
.+++. +..|+.++-|..||..+. . ...+. .....|.++...++++.|..|+.++-|..||..+++..
T Consensus 365 d~~g~--lWiGt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~ 440 (795)
T 4a2l_A 365 DKDKN--LWIGTNDGGLNLYNPITQ-R-FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE 440 (795)
T ss_dssp CTTSC--EEEEESSSCEEEECTTTC-C-EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred CCCCC--EEEEECCCCeEEEcCCCC-c-EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE
Confidence 88886 667888878999998763 2 22221 12357899999888886777887777999998876432
Q ss_pred ccee----ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee-------cCCCCeEEEEEecCCCEEE
Q psy6213 220 EYSI----NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT-------EHKDVVSGLAWRGDPQLFI 288 (330)
Q Consensus 220 ~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~ 288 (330)
.... .....|.++...++|.. .++. . +.|..||..++.. ..+. .....|.++...++|++.+
T Consensus 441 ~~~~~~~~l~~~~v~~i~~d~~g~l-wigt---~-~Gl~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 441 NFNQRNSQLVNENVYAILPDGEGNL-WLGT---L-SALVRFNPEQRSF--TTIEKEKDGTPVVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp EECTTTSCCSCSCEEEEEECSSSCE-EEEE---S-SCEEEEETTTTEE--EECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred EeecCCCCcCCCeeEEEEECCCCCE-EEEe---c-CceeEEeCCCCeE--EEccccccccccCCceEEEEEECCCCCEEE
Confidence 2211 12457899999998884 4443 2 4588899876542 2221 1235789999998888666
Q ss_pred EeecCCeEeeeec
Q psy6213 289 ASSRVSIIPRAKN 301 (330)
Q Consensus 289 s~~~dg~i~iw~~ 301 (330)
... +| |..|+.
T Consensus 514 gt~-~G-l~~~~~ 524 (795)
T 4a2l_A 514 GGE-EG-LSVFKQ 524 (795)
T ss_dssp EES-SC-EEEEEE
T ss_pred EeC-Cc-eEEEeC
Confidence 544 44 666654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-07 Score=79.38 Aligned_cols=226 Identities=8% Similarity=-0.057 Sum_probs=144.2
Q ss_pred cEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeE
Q psy6213 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVR 144 (330)
Q Consensus 65 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 144 (330)
.+|+.+. ...|+.+++.. ........ .......++|.+.++.++++-...+.|+.+++........+........
T Consensus 88 ~~l~~~~-~~~I~~i~~~~---~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~ 162 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHR---SEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG 162 (386)
T ss_dssp CEEEEEC-BSCEEEECTTS---CCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC
T ss_pred ceeEeec-CccceeeccCC---CcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc
Confidence 3444443 35688888765 22222222 3355789999974555666666678899999876654443333334567
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe-cC-CcEEEEeCCCCccccce
Q psy6213 145 DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS-RD-KTIKVWDLSIKPSLEYS 222 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~ 222 (330)
.+++.+.+..++++-...+.|.+.++.. ......+.........++++|.+..|+... .. +.|..+++.........
T Consensus 163 glavd~~~g~lY~~d~~~~~I~~~~~dg-~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 241 (386)
T 3v65_B 163 GLAVDWVHDKLYWTDSGTSRIEVANLDG-AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA 241 (386)
T ss_dssp CEEEETTTTEEEEEETTTTEEEECBTTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEEEeCCCeEEEEcCCCCeEEEEeCCC-CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE
Confidence 7899987776677767778899988874 222222333345678999998666555544 44 67888888765332222
Q ss_pred eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 223 INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 223 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
.........++++|++..|+.+-. ..+.|..+|+..... ............++++. ++.++++-...+.|..+.
T Consensus 242 ~~~~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 242 DTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHR-KAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp CSSCSCEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSC-EEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred ECCCCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCee-EEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEE
Confidence 233456889999998887777776 688999999875432 22333334456788883 455555655667777765
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-06 Score=80.63 Aligned_cols=269 Identities=7% Similarity=0.103 Sum_probs=168.7
Q ss_pred ceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC
Q psy6213 7 VHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS 85 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 85 (330)
|.++...++|.+.++. ++.+..|+..+++........ ....|.++...+ ++.+ ..|+.++.+..||..+
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~------~~~~i~~i~~d~-~g~l-wigt~~~Gl~~~~~~~-- 244 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPIL------GTKQIQAILQQS-PTRI-WVATEGAGLFLINPKT-- 244 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----------CCCEEEEEEEE-TTEE-EEEEBSSCEEEEETTT--
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCC------CCCeeEEEEEcC-CCCE-EEEECCCCeEEEeCCC--
Confidence 8888888899884444 556888998876654322111 112357777765 5554 4455444488899765
Q ss_pred CCceeEEecc-------cccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee-------cCCCCeEEEEEcCC
Q psy6213 86 RSKQERVFND-------HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH-------SNTESVRDVEFNPH 151 (330)
Q Consensus 86 ~~~~~~~~~~-------~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~ 151 (330)
.+....... ....|.++...+ ++. |..|+.+ -|.+||..+++...... .....|.++...++
T Consensus 245 -~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 320 (795)
T 4a2l_A 245 -KEIKNYLHSPSNPKSISSNYIRSLAMDS-QNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ 320 (795)
T ss_dssp -TEEEEECCCTTCTTSCSCSBEEEEEECT-TSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT
T ss_pred -CeEEEeecCCCCccccCCCeEEEEEEcC-CCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC
Confidence 222221111 135688888775 555 5555555 58899987665433221 12356999999998
Q ss_pred CCcEEEEEecCCcEEEEecCCCccceeeecc-------CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee-
Q psy6213 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTA-------HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI- 223 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~- 223 (330)
|. +..|+.++-|..++..+.. ...+.. ....|.++...++|. |..|+.++-|..||..+.+......
T Consensus 321 g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~ 395 (795)
T 4a2l_A 321 GG--MWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQ 395 (795)
T ss_dssp SC--EEEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC
T ss_pred cC--EEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecC
Confidence 86 6778887889999876522 111211 235689999888876 5567777779999987663322211
Q ss_pred -------ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee-----cCCCCeEEEEEecCCCEEEEee
Q psy6213 224 -------NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT-----EHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 224 -------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
-....|.++...+++..+.++. .++.|..||..+++. ..+. .....|.++...++|.+.+..
T Consensus 396 ~~~~~~~l~~~~v~~i~~d~~g~~lWigt---~~~Gl~~~d~~~~~~--~~~~~~~~~l~~~~v~~i~~d~~g~lwigt- 469 (795)
T 4a2l_A 396 EDESARGIGSNNIKAVYVDEKKSLVYIGT---HAGGLSILHRNSGQV--ENFNQRNSQLVNENVYAILPDGEGNLWLGT- 469 (795)
T ss_dssp ------CCSCSCEEEEEEETTTTEEEEEE---TTTEEEEEETTTCCE--EEECTTTSCCSCSCEEEEEECSSSCEEEEE-
T ss_pred CCCcccCCCCccEEEEEEcCCCCEEEEEe---CcCceeEEeCCCCcE--EEeecCCCCcCCCeeEEEEECCCCCEEEEe-
Confidence 1235689999999988324443 367899999887653 2222 234579999998888766554
Q ss_pred cCCeEeeeec
Q psy6213 292 RVSIIPRAKN 301 (330)
Q Consensus 292 ~dg~i~iw~~ 301 (330)
.+| |.+|+.
T Consensus 470 ~~G-l~~~~~ 478 (795)
T 4a2l_A 470 LSA-LVRFNP 478 (795)
T ss_dssp SSC-EEEEET
T ss_pred cCc-eeEEeC
Confidence 444 666654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.5e-08 Score=74.05 Aligned_cols=191 Identities=12% Similarity=0.126 Sum_probs=126.6
Q ss_pred eeEEecccc--cceeEEEEEecCCCEEEEEecCC--cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc
Q psy6213 89 QERVFNDHK--RTVNKVSFHYVESNWLISGSQDG--TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164 (330)
Q Consensus 89 ~~~~~~~~~--~~i~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~ 164 (330)
.+..+ .|. .-...+.|+ ++.++.+.+.+| .|+.+|+.+++.+........ .......+.++.++...-.++.
T Consensus 11 v~~~~-phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEc-CCCCccccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCE
Confidence 34444 354 346688988 466677777654 899999999999888865433 2222223335557777778999
Q ss_pred EEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecc-----ccceEEEEEcCCCC
Q psy6213 165 IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-----IASVSRIKWRPQRK 239 (330)
Q Consensus 165 i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~ 239 (330)
+.+||.++ .+.+.++.... .-..++ ++++.|+.+..++.|.++|..+.+......-. -..++.+.+. +|+
T Consensus 87 v~v~D~~t-l~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 87 GFVYDLAT-LTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEETTT-TEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEECCc-CcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999988 56666666432 223444 56777777777899999999988553332221 1345667766 555
Q ss_pred eEEEEeecccCCeEEEEEccCCCccceEeec-------------CCCCeEEEEEecCCCEEEEeec
Q psy6213 240 FHLASCSLVVDSSVNVWDIRRPYIPLASFTE-------------HKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
+++..- .+..|.+.|..+++. +..+.. .....++|+++|+++.|...+.
T Consensus 162 -lyanvw--~s~~I~vIDp~tG~V-~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 162 -LLANVW--LTSRIARIDPASGKV-VAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp -EEEEET--TTTEEEEECTTTCBE-EEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred -EEEEEC--CCCeEEEEECCCCCE-EEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 566664 588999999999875 444331 1236799999998777766654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=8e-07 Score=72.16 Aligned_cols=226 Identities=12% Similarity=0.001 Sum_probs=140.6
Q ss_pred EEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec----CceeeeeecCCC
Q psy6213 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC----QESTKIFHSNTE 141 (330)
Q Consensus 66 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~ 141 (330)
+|+.+.. ..|+..++.. ......+. .-.....++|.+.++.++++-...+.|..+++.. ......+...-.
T Consensus 3 ~ll~~~~-~~I~~i~~~~---~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 77 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDR---SEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (316)
T ss_dssp EEEEECB-SSEEEEETTS---CCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEEECC-CeEEEEECCC---cceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCC
Confidence 3444443 4688899886 33333333 3456789999974455566666678999999875 222222322224
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec-C-CcEEEEeCCCCccc
Q psy6213 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR-D-KTIKVWDLSIKPSL 219 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~ 219 (330)
....+++.+.+..++++-...+.|.++++.. ................++++|.+..|+.+.. . +.|..+++......
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~ 156 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 156 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE
Confidence 5678999876665667767788999999874 2222223323456789999996665555543 3 67888887654222
Q ss_pred cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec--CCCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 220 EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE--HKDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 220 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
............++++|++..|+.+-. ..+.|..+|+..... ...... ......++++. .+.+.++-...+.|.
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEEECCCCCceEEEEeccCCEEEEEEC--CCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 222223456889999998887777776 678999999975432 122221 22346788885 355555555667787
Q ss_pred eeec
Q psy6213 298 RAKN 301 (330)
Q Consensus 298 iw~~ 301 (330)
.++.
T Consensus 233 ~~~~ 236 (316)
T 1ijq_A 233 SANR 236 (316)
T ss_dssp EEET
T ss_pred EEeC
Confidence 7754
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.5e-08 Score=76.19 Aligned_cols=178 Identities=15% Similarity=0.209 Sum_probs=119.6
Q ss_pred eEEEEeeCCCe-eecC-CC--eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCC
Q psy6213 8 HKHGLKADNGL-AQPS-RN--VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83 (330)
Q Consensus 8 ~~~~~s~~~~~-~~~g-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 83 (330)
..+.|+ ++.+ .++| +| .|+++|+++++......+.... +. ..++.. ++.+.++...++.+.+||..+
T Consensus 46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~-----Fg-eGit~~--g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY-----FG-EGISDW--KDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC-----CE-EEEEEE--TTEEEEEESSSSEEEEEETTT
T ss_pred ceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc-----ce-eEEEEe--CCEEEEEEeeCCEEEEEECcc
Confidence 678888 6766 7777 65 9999999999988777554211 11 233443 345555555688999999988
Q ss_pred CCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC--C---CCeEEEEEcCCCCcEEEE
Q psy6213 84 ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN--T---ESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~~~~~ 158 (330)
.+.+.++.... .-..++ + +++.|+.+..++.|.++|..+.+.+..+... . ..++.+.|. +|. +++.
T Consensus 117 ---~~~~~ti~~~~-eG~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan 187 (262)
T 3nol_A 117 ---LRQVRSFNYDG-EGWGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFAN 187 (262)
T ss_dssp ---CCEEEEEECSS-CCCCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEE
T ss_pred ---CcEEEEEECCC-CceEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEE
Confidence 67776665422 223444 4 4555555555788999999998887776542 2 234567776 564 6666
Q ss_pred EecCCcEEEEecCCCccceeeeccC------------CCCeEEEEEcCCCCEEEEEec
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAH------------SGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~ 204 (330)
.-.+..|.+.|.++ ++.+..+... ....+.|+|+|+++.|++.+.
T Consensus 188 ~w~~~~I~vIDp~t-G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 188 VWQTNKIVRIDPET-GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ETTSSEEEEECTTT-CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EccCCeEEEEECCC-CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 66788999999988 4544443321 235689999998887777775
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-07 Score=76.07 Aligned_cols=233 Identities=12% Similarity=0.057 Sum_probs=141.7
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEec--------------------ccccceeEEEEEecCCCEEE
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFN--------------------DHKRTVNKVSFHYVESNWLI 114 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------------------~~~~~i~~i~~~~~~~~~l~ 114 (330)
.+++|.+ ++++++++..++.|..|+... ... ..+. ........+++.+ +...|+
T Consensus 22 ~~i~~d~-~g~~l~v~~~~~~i~~~~~~~---~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~ 95 (322)
T 2fp8_A 22 NSFTFDS-TNKGFYTSVQDGRVIKYEGPN---SGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLY 95 (322)
T ss_dssp CCEECCT-TCSSEEEECTTSEEEEECCTT---TCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEE
T ss_pred eEEEEcC-CCCEEEEEcCCCeEEEECCCC---Cce-EEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEE
Confidence 7789998 788788888899999998765 222 1111 0113578899885 334455
Q ss_pred EEecCCcEEEEEeecCceeeeeec-----CCCCeEEEEEcC-CCCcEEEEEec-----------------CCcEEEEecC
Q psy6213 115 SGSQDGTMRLFDIRCQESTKIFHS-----NTESVRDVEFNP-HSPYAFASVSE-----------------NGTIQQWDVR 171 (330)
Q Consensus 115 ~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~~~~~-----------------dg~i~i~d~~ 171 (330)
.+...+.|..+|..+++. ..+.. .......+++.+ ++. ++++-.. ++.|..+|..
T Consensus 96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 555555688888765432 22211 113468899999 886 4554322 3678888876
Q ss_pred CCccceeeeccCCCCeEEEEEcCCCCEEEEE-ecCCcEEEEeCCCCcc--ccceeccccceEEEEEcCCCCeEEEEeec-
Q psy6213 172 RPEKCFYQFTAHSGPIFACDWHPEHAWLATA-SRDKTIKVWDLSIKPS--LEYSINTIASVSRIKWRPQRKFHLASCSL- 247 (330)
Q Consensus 172 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~- 247 (330)
+. .. ..+.........++++|+++.|+.+ ...+.|..|++..... ......... ...+++.++|.. .++...
T Consensus 174 ~~-~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l-~va~~~~ 249 (322)
T 2fp8_A 174 TK-ET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF-WVSSSEE 249 (322)
T ss_dssp TT-EE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE-EEEEEEE
T ss_pred CC-EE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE-EEEecCc
Confidence 52 22 2222222345679999999866555 5668999999875321 111111223 788999999985 444430
Q ss_pred -------ccCCeEEEEEccCCCccceEeecCC----CCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 248 -------VVDSSVNVWDIRRPYIPLASFTEHK----DVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 248 -------~~~~~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
...+.|..+|.. ++. +..+.... ..+.++++ .++++.++....+.|.+++..
T Consensus 250 ~~~~~~~~~~~~v~~~d~~-G~~-~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDEF-GNI-LEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTSSTTSCEEEEEEEECTT-SCE-EEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred ccccccCCCccEEEEECCC-CCE-EEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 013567888764 433 44444332 34666766 466666666677888888754
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-06 Score=71.38 Aligned_cols=231 Identities=8% Similarity=-0.005 Sum_probs=140.9
Q ss_pred ecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccc
Q psy6213 20 QPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRT 99 (330)
Q Consensus 20 ~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 99 (330)
.+....|+..+++.............. ...+++|.+.++.++.+-...+.|..++...... ....+...-..
T Consensus 9 ~~~~~~I~~i~l~~~~~~~~~~~~~~~------~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~--~~~~~~~~l~~ 80 (318)
T 3sov_A 9 YANRRDLRLVDATNGKENATIVVGGLE------DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--VQNVVVSGLLS 80 (318)
T ss_dssp EECEEEEEEEETTCTTSCCEEEEEEEE------EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC--CCEEEEECCSC
T ss_pred EEccCeEEEEECCCCceEEEEEecCCC------ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc--eEEEEcCCCCC
Confidence 333677888888875311111111111 1378999984556666666778899999876311 11122222245
Q ss_pred eeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe-cCCcEEEEecCCCcccee
Q psy6213 100 VNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS-ENGTIQQWDVRRPEKCFY 178 (330)
Q Consensus 100 i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~ 178 (330)
...+++.+.+++++++-...+.|.+++++.................+++.|.+.+++.+-. ..+.|...++... ....
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~ 159 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFI 159 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEE
Confidence 6778888646666666667789999998754333333334456789999998775555442 3578888887642 2122
Q ss_pred eeccCCCCeEEEEEcCCCCEEEEE-ecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEE
Q psy6213 179 QFTAHSGPIFACDWHPEHAWLATA-SRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257 (330)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d 257 (330)
.....-...+.++++|++..|..+ +..+.|..+|+..................+++..+ .++.+.. ..+.|..++
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~--~lywtd~--~~~~V~~~~ 235 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW--STHSILACN 235 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT--EEEEEET--TTTEEEEEE
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC--EEEEEec--CCCeEEEEE
Confidence 222233457899999966655544 46678999998754332222223455677777543 4566655 588999999
Q ss_pred ccCCCc
Q psy6213 258 IRRPYI 263 (330)
Q Consensus 258 ~~~~~~ 263 (330)
..+++.
T Consensus 236 ~~~G~~ 241 (318)
T 3sov_A 236 KYTGEG 241 (318)
T ss_dssp TTTCCS
T ss_pred CCCCCc
Confidence 877654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-06 Score=69.05 Aligned_cols=229 Identities=9% Similarity=0.038 Sum_probs=138.6
Q ss_pred cCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCce-eEEecccccc
Q psy6213 21 PSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQ-ERVFNDHKRT 99 (330)
Q Consensus 21 ~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~ 99 (330)
+..+.|+..++++.+....... ...+..++|.+.++.++++-..++.|..+++........ ...+...-..
T Consensus 7 ~~~~~I~~i~~~~~~~~~~~~~--------~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 78 (316)
T 1ijq_A 7 TNRHEVRKMTLDRSEYTSLIPN--------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 78 (316)
T ss_dssp ECBSSEEEEETTSCCCEEEECS--------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred ECCCeEEEEECCCcceEehhcC--------CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence 3356788889887664433211 112478999983445555556678899998865110011 1122222245
Q ss_pred eeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecC-CcEEEEecCCCcccee
Q psy6213 100 VNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSEN-GTIQQWDVRRPEKCFY 178 (330)
Q Consensus 100 i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~ 178 (330)
...+++.+.+++++++-...+.|.++++........+.........++++|.+.+++++.... +.|...++.. ....
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG--~~~~ 156 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIY 156 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CCEE
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC--CCeE
Confidence 678888864556666666778999999875443333333445678999999777666555443 6888888764 2222
Q ss_pred ee-ccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCcccccee--ccccceEEEEEcCCCCeEEEEeecccCCeEE
Q psy6213 179 QF-TAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPSLEYSI--NTIASVSRIKWRPQRKFHLASCSLVVDSSVN 254 (330)
Q Consensus 179 ~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~ 254 (330)
.+ ...-...+.++++|++..|+.+. ..+.|..+|+.......... ........+++.. ..++.+.. ..+.|.
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~--~~ly~~d~--~~~~V~ 232 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDI--INEAIF 232 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEET--TTTEEE
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEEC--CEEEEEEC--CCCeEE
Confidence 22 22345678999998766665554 56789999987542222111 1234566777753 34566665 588999
Q ss_pred EEEccCCCc
Q psy6213 255 VWDIRRPYI 263 (330)
Q Consensus 255 i~d~~~~~~ 263 (330)
.++..+++.
T Consensus 233 ~~~~~~g~~ 241 (316)
T 1ijq_A 233 SANRLTGSD 241 (316)
T ss_dssp EEETTTCCC
T ss_pred EEeCCCCcc
Confidence 999876654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-07 Score=75.34 Aligned_cols=223 Identities=10% Similarity=0.066 Sum_probs=132.1
Q ss_pred cceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCC--cEEEEEC
Q psy6213 6 PVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG--AVVVWNL 81 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iw~~ 81 (330)
....++|+++|+++++. ++.|..||.+.. ....... ...+..+++.+ +++++++..... .|..++.
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~--------~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~ 102 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV--------EGKVSGLAFTS-NGDLVATGWNADSIPVVSLVK 102 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC--------SSEEEEEEECT-TSCEEEEEECTTSCEEEEEEC
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC--------CCCceeEEEcC-CCcEEEEeccCCcceEEEEcC
Confidence 45678999999984444 889999987753 3222221 12358899999 777665553322 3666665
Q ss_pred CCCCCCceeEEec-ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-eeee-------e--cCCCCeEEEEEcC
Q psy6213 82 GQISRSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-TKIF-------H--SNTESVRDVEFNP 150 (330)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~-------~--~~~~~v~~~~~~~ 150 (330)
.+ ++...... ........++..+ ++..+++-..++.|+.+|..+++. +... . ..-.....+ +|
T Consensus 103 ~~---g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 103 SD---GTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp TT---SCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred CC---CeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 55 23222111 1112234444443 444444444578888888765421 1100 0 111234455 78
Q ss_pred CCCcEEEEEecCCcEEEEecCCCccc--eeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc-cceec-cc
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKC--FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL-EYSIN-TI 226 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~~ 226 (330)
++++++++-...+.|..+|+...+.. ...+. .......++++++|+++++....+.|.++|.. ++.. ..... ..
T Consensus 177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV 254 (306)
T ss_dssp ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence 88877777777889999998742211 11121 11346778999999887777778899999976 3221 11112 23
Q ss_pred cceEEEEEc---CCCCeEEEEee
Q psy6213 227 ASVSRIKWR---PQRKFHLASCS 246 (330)
Q Consensus 227 ~~v~~~~~~---~~~~~l~~~~~ 246 (330)
...++++|. |++..|+++..
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEEC
T ss_pred CCceEEEEecccCCCCEEEEECC
Confidence 568999998 89887777765
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-08 Score=87.54 Aligned_cols=275 Identities=12% Similarity=0.074 Sum_probs=161.8
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeecccccccc---c-eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCce
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNF---S-CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQ 89 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~-v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 89 (330)
++..++++ ++.|.-+|..+|+.+-.+............ . ...++. .+..+++++.|+.|..+|..+ ++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~t---G~~ 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKT---GKA 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTT---CCE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE---ECCEEEEEcCCCEEEEEECCC---CCE
Confidence 44444444 889999999998877665543221110000 0 011222 356778888899999999988 555
Q ss_pred eEEecccc----cceeE-EEEEecCCCEEEEEec------CCcEEEEEeecCceeeeeecCC------------------
Q psy6213 90 ERVFNDHK----RTVNK-VSFHYVESNWLISGSQ------DGTMRLFDIRCQESTKIFHSNT------------------ 140 (330)
Q Consensus 90 ~~~~~~~~----~~i~~-i~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~------------------ 140 (330)
+-.+.... ..+.+ ..+. ++ .++++.. +|.|+.+|.++++.+-.+....
T Consensus 140 ~W~~~~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 216 (668)
T 1kv9_A 140 IWSQQTTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT 216 (668)
T ss_dssp EEEEECSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred eeeeccCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence 54443211 11111 1111 33 4555433 5899999999999887765311
Q ss_pred -------------CCeEEEEEcCCCCcEEEEEecCC-------------------cEEEEecCCCccceeeecc--CC--
Q psy6213 141 -------------ESVRDVEFNPHSPYAFASVSENG-------------------TIQQWDVRRPEKCFYQFTA--HS-- 184 (330)
Q Consensus 141 -------------~~v~~~~~~~~~~~~~~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~--~~-- 184 (330)
.....+++.|+.. +++.+..++ .|..+|.+++ +.+-.++. |.
T Consensus 217 ~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG-~~~W~~~~~~~~~w 294 (668)
T 1kv9_A 217 WQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG-KLAWHYQVTPGDSW 294 (668)
T ss_dssp CCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC-CEEEEEESSTTCCS
T ss_pred CCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC-ceeeEeecCCCccc
Confidence 0112467888777 577777665 3999999984 44433332 22
Q ss_pred -----CCeEEEEEcCCCC---EEEEEecCCcEEEEeCCCCccccceec------------cccce---------------
Q psy6213 185 -----GPIFACDWHPEHA---WLATASRDKTIKVWDLSIKPSLEYSIN------------TIASV--------------- 229 (330)
Q Consensus 185 -----~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~~~~v--------------- 229 (330)
.+.....+..+|+ .++.++.+|.++++|..+++.+..... ...++
T Consensus 295 d~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 374 (668)
T 1kv9_A 295 DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW 374 (668)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred cccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEEC
Confidence 2233233333665 688999999999999998865411100 00000
Q ss_pred ---------EEEEEcCCCCeEEEEee---------------------------------cccCCeEEEEEccCCCccceE
Q psy6213 230 ---------SRIKWRPQRKFHLASCS---------------------------------LVVDSSVNVWDIRRPYIPLAS 267 (330)
Q Consensus 230 ---------~~~~~~~~~~~l~~~~~---------------------------------~~~~~~i~i~d~~~~~~~~~~ 267 (330)
..++++|+...+++... ...+|.|..||+.+++. +-.
T Consensus 375 p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~-~W~ 453 (668)
T 1kv9_A 375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA-AWK 453 (668)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE-EEE
T ss_pred CCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE-EEE
Confidence 12677777665444211 00248899999999875 333
Q ss_pred eecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 268 FTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 268 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
... ..+.....+...+.+++.++.||.++.|+..
T Consensus 454 ~~~-~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 454 VPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp EEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred ccC-CCCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence 332 2334444455578889999999999999753
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=9.6e-08 Score=77.92 Aligned_cols=242 Identities=10% Similarity=0.038 Sum_probs=138.6
Q ss_pred ceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeec-------------cccccccceeeeeecccCCcEEEEEc
Q psy6213 7 VHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVG-------------KNINLNFSCNDVAWSCIEENHIATGA 71 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~l~~~~ 71 (330)
..++++.++|++ .+.. ++.|..|+..+++... +..... ........+..+++.+ ++..|+++.
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIVD 98 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEEE
Confidence 467889999985 4444 8999999887655432 111000 0001112357888886 444555555
Q ss_pred CCCcEEEEECCCCCCCceeEEecc-----cccceeEEEEEecCCCEEEEEec-----------------CCcEEEEEeec
Q psy6213 72 TNGAVVVWNLGQISRSKQERVFND-----HKRTVNKVSFHYVESNWLISGSQ-----------------DGTMRLFDIRC 129 (330)
Q Consensus 72 ~dg~i~iw~~~~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~~l~~~~~-----------------d~~i~i~d~~~ 129 (330)
..+.+..+|..+ .. ...+.. .......+++.+.++++.++-.. ++.|..+|..+
T Consensus 99 ~~~~i~~~d~~~---g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 99 CYYHLSVVGSEG---GH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp TTTEEEEECTTC---EE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred CCCCEEEEeCCC---CE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 455588888664 21 122211 11346778888524565555432 36788888766
Q ss_pred CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEec----
Q psy6213 130 QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLATASR---- 204 (330)
Q Consensus 130 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---- 204 (330)
++...... .......++++|+++.++++-...+.|..|++..... ....+....+ ...+++.++|++.++...
T Consensus 175 ~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 175 KETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp TEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred CEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence 65432222 2234567999999986555656678999999874211 1112211223 788999999987666544
Q ss_pred ------CCcEEEEeCCCCccccceecc----ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 205 ------DKTIKVWDLSIKPSLEYSINT----IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 205 ------dg~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
.+.|..+|.. ++........ ...++.+++ .++. |+++.. .++.|..+++...
T Consensus 253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~--~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTL--FHGSVGILVYDKK 314 (322)
T ss_dssp STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECS--SCSEEEEEEC---
T ss_pred cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCE-EEEeec--CCCceEEEecccc
Confidence 4668888865 3232222211 234666666 3454 555554 4888999987644
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.7e-07 Score=73.81 Aligned_cols=227 Identities=9% Similarity=0.041 Sum_probs=134.7
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC--cEEEEEeecCc
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG--TMRLFDIRCQE 131 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~ 131 (330)
...++|++ +++++++-..++.|..||... .....+. .......+++.+ +++++++..... .|..+|..+++
T Consensus 34 pegia~~~-~g~lyv~d~~~~~I~~~d~~g----~~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 34 LENLASAP-DGTIFVTNHEVGEIVSITPDG----NQQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTTC----CEEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSC
T ss_pred cceEEECC-CCCEEEEeCCCCeEEEECCCC----ceEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCe
Confidence 47899999 888777776788999998764 2222222 235688999997 777665554322 46667766666
Q ss_pred eeeeeec-CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee---------eeccCCCCeEEEEEcCCCCEEEE
Q psy6213 132 STKIFHS-NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY---------QFTAHSGPIFACDWHPEHAWLAT 201 (330)
Q Consensus 132 ~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~l~~ 201 (330)
....... .......++..+++. ++++-..++.|+.+|.......+. .........+.+ +|+++.|+.
T Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 107 VETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred EEEEEeCCCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence 5433221 122334555555443 455544688899999764211111 000111234555 778775554
Q ss_pred E-ecCCcEEEEeCCC-Ccc-ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc-ceEeecCCCCeEE
Q psy6213 202 A-SRDKTIKVWDLSI-KPS-LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP-LASFTEHKDVVSG 277 (330)
Q Consensus 202 ~-~~dg~i~i~d~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~~v~~ 277 (330)
+ ...+.|..||+.. +.. .............++++++|.. +++.. ..+.|.++|.. ++.. +..........++
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l-~va~~--~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~ 259 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNL-YGATH--IYNSVVRIAPD-RSTTIIAQAEQGVIGSTA 259 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCE-EEECB--TTCCEEEECTT-CCEEEEECGGGTCTTEEE
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCE-EEEeC--CCCeEEEECCC-CCEEEEeecccccCCceE
Confidence 4 5678899999875 211 1111111234667899999975 55544 47899999975 4321 1122222356899
Q ss_pred EEEe---cCCCEEEEeecCC
Q psy6213 278 LAWR---GDPQLFIASSRVS 294 (330)
Q Consensus 278 ~~~~---~~~~~l~s~~~dg 294 (330)
++|. |+++.|+.++..+
T Consensus 260 ~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 260 VAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEECCSTTTTTEEEEEECTT
T ss_pred EEEecccCCCCEEEEECCCC
Confidence 9998 8887777766543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.1e-08 Score=74.49 Aligned_cols=177 Identities=6% Similarity=-0.028 Sum_probs=121.0
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeE--EEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNK--VSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~--i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
..+.|+ ++.++.+.+.+|.|+.+|+++ ++....+ -...... +++. ++.+.+..-.++.+.+||.++.+.
T Consensus 58 qGL~~~--~~~Ly~stG~~g~v~~iD~~T---gkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGHQGTLRQLSLES---AQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEECCSSC---SSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE
T ss_pred ceEEEE--CCEEEEEcCCCCEEEEEECCC---CcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE
Confidence 577776 467778888889999999998 4444444 2233333 4443 566666667789999999999999
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc--CC---CCeEEEEEcCCCCEEEEEecCCc
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA--HS---GPIFACDWHPEHAWLATASRDKT 207 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~l~~~~~dg~ 207 (330)
+.++...... ..++ ++++. |+.+..++.|.++|..+ .+....+.. +. ..++.+.|. +|+..+..-.+..
T Consensus 129 ~~ti~~~~eG-wGLt--~Dg~~-L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 129 ERTTRYSGEG-WGLC--YWNGK-LVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEEECSSCC-CCEE--EETTE-EEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEEEeCCCce-eEEe--cCCCE-EEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence 9988753322 2333 56775 55555688999999988 455554443 21 245677877 7766655556889
Q ss_pred EEEEeCCCCcccccee-------------ccccceEEEEEcCCCCeEEEEee
Q psy6213 208 IKVWDLSIKPSLEYSI-------------NTIASVSRIKWRPQRKFHLASCS 246 (330)
Q Consensus 208 i~i~d~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~ 246 (330)
|.+.|.++++...... ....-.+.++++|+++.+++++.
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999999985422211 12246789999999888888874
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-06 Score=71.48 Aligned_cols=225 Identities=12% Similarity=-0.005 Sum_probs=141.9
Q ss_pred EEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC----ceeeeeecCCC
Q psy6213 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ----ESTKIFHSNTE 141 (330)
Q Consensus 66 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~ 141 (330)
+|+.+. ...|+..++.. ...... ......+..++|++.++.++++-...+.|+.+++... .....+.....
T Consensus 85 ~ll~~~-~~~I~~i~l~~---~~~~~~-~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDR---SEYTSL-IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp EEEEEE-TTEEEEECTTS---CSCEEE-ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred eeEEec-cceeEEEccCC---cceeEe-ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 444443 46788888876 222222 2344678899999845555555556788999988752 22333333445
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe-c-CCcEEEEeCCCCccc
Q psy6213 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS-R-DKTIKVWDLSIKPSL 219 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~ 219 (330)
....+++.+.+..++++-...+.|.+.++.. ......+.........++++|.+..|+... . .+.|...++......
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g-~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTT-CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCC-CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 6788999986665777777788999999875 322233333445678999999666555554 2 378999988765333
Q ss_pred cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec--CCCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 220 EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE--HKDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 220 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
............+++++++..|+.+-. ..+.|..+|+..... ...... .-....+++.. .+.++.+-...+.|.
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 314 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEE
Confidence 222233467899999998888777776 688999999875543 222222 22345677773 344555555566676
Q ss_pred eee
Q psy6213 298 RAK 300 (330)
Q Consensus 298 iw~ 300 (330)
.++
T Consensus 315 ~~~ 317 (400)
T 3p5b_L 315 SAN 317 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-06 Score=76.75 Aligned_cols=280 Identities=10% Similarity=0.038 Sum_probs=165.4
Q ss_pred ccceEEEEeeCCCeeecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 5 SPVHKHGLKADNGLAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
..|.++...++|.+.++..+.+.+||..++++.................|.++...+ ++. |..|+..+-|.+++..+.
T Consensus 211 ~~i~~i~~d~~g~lwigt~~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSKGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLK-DNK-LWIATELNGIMILDLQQN 288 (781)
T ss_dssp SSEEEEEECTTCCEEEEETTEEEEEETTTTEEEC-----------CCCCEEEEEECT-TSE-EEEEESSSCEEEEETTCC
T ss_pred CceeEEEEcCCCCEEEEeCCcHheECCCCCcEEEEEcCCCccccccCceEEEEEECC-CCC-EEEEeCCCCeEEECCCCC
Confidence 458888888888884444337889998776654322111000011123367777765 444 555666456888887652
Q ss_pred CCCceeEE------------ecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee---------cCCCCe
Q psy6213 85 SRSKQERV------------FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH---------SNTESV 143 (330)
Q Consensus 85 ~~~~~~~~------------~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~~v 143 (330)
.. ..... .......|.++...+ ++ .|-.|+.++-|..++..+........ .....|
T Consensus 289 ~~-~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 289 QF-LLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp ----------CEEECBCSSTTSBSSSCEEEEEECS-SC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred ee-eeeeccccccccCCCCCCCCCCCeEEEEEEeC-CC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence 11 11110 011235688888765 44 46667767779999876544322110 123568
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeee----ccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc
Q psy6213 144 RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQF----TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL 219 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 219 (330)
.++...+++. +..|+.++-|..||..+. . ...+ ......|.++...+++.+ ..|+.++-+..+|..+++..
T Consensus 366 ~~i~~d~~g~--lWigt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 366 SSVCDDGQGK--LWIGTDGGGINVFENGKR-V-AIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp EEEEECTTSC--EEEEEBSSCEEEEETTEE-E-EECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEE
T ss_pred EEEEEcCCCC--EEEEeCCCcEEEEECCCC-e-EEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEE
Confidence 9999888876 667776777999997652 2 1111 123457889988877764 45776667899998766332
Q ss_pred ccee--ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC-----CCCeEEEEEecCCCEEEEeec
Q psy6213 220 EYSI--NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH-----KDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 220 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~ 292 (330)
.... .....|.++...+++.. .++. .+.|..||..+++. ....... ...|.++...++|.+.+....
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~l-wigt----~~Gl~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~ 514 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKKI-WIGT----HAGVFVIDLASKKV-IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG 514 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSEE-EEEE----TTEEEEEESSSSSC-CEEECTTTSSCSCSCEEEEEECTTCCEEEEESS
T ss_pred EeccCCCCCCeEEEEEECCCCCE-EEEE----CCceEEEeCCCCeE-EecccCcccccccceeEEEEEcCCCCEEEEEcC
Confidence 2211 13467899999988874 4433 36789999877653 2221111 357899999988886654433
Q ss_pred CCeEeeeec
Q psy6213 293 VSIIPRAKN 301 (330)
Q Consensus 293 dg~i~iw~~ 301 (330)
+| |..++.
T Consensus 515 ~G-l~~~~~ 522 (781)
T 3v9f_A 515 GG-VGIYTP 522 (781)
T ss_dssp SC-EEEECT
T ss_pred CC-EEEEeC
Confidence 45 555653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.00 E-value=1.8e-06 Score=70.06 Aligned_cols=228 Identities=9% Similarity=-0.034 Sum_probs=142.8
Q ss_pred EEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee-eeeecCCCCeE
Q psy6213 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST-KIFHSNTESVR 144 (330)
Q Consensus 66 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~v~ 144 (330)
+|+.+. ...|+..+++... ......+. .......+.|.+.++.++.+-...+.|..+++..+... ..+...-....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~-~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~ 82 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGK-ENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 82 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTT-SCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred EEEEEc-cCeEEEEECCCCc-eEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence 344443 4578999987632 11112222 23456789999855666666667788999998765322 22222334567
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe--cCCcEEEEeCCCCccccce
Q psy6213 145 DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS--RDKTIKVWDLSIKPSLEYS 222 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~ 222 (330)
.+++.+.+..++++-...+.|.++++... ...............+++.|.+..|+.+. ..+.|...++.........
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~ 161 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 161 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCC-cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence 89999876656777667789999998752 22222223445678999998765555554 3578888887654222222
Q ss_pred eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 223 INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 223 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.........++++|++..|+.+-. ..+.|..+|+..... ............++++.. +.++.+-...+.|..++.
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNK 236 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSC-EEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred ECCCCCccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCce-EEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence 223456789999998887787776 689999999875432 222232344567788753 344555555667777654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-06 Score=78.65 Aligned_cols=276 Identities=13% Similarity=0.082 Sum_probs=165.7
Q ss_pred ccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeec-------eeeccccccccceeeeeecccCCcEEEEEcCCCcE
Q psy6213 5 SPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHN-------LRVGKNINLNFSCNDVAWSCIEENHIATGATNGAV 76 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 76 (330)
..|.++...++|.+.++. .+-|.+++..++.+..... .......-....|.++...+ ++. |-.|+.++-|
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWigt~~~Gl 335 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWIGTWGGGI 335 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEEEEBSSCE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEEEecCCeE
Confidence 468888888888884444 4678889988765432211 00000011123467787776 554 5567766778
Q ss_pred EEEECCCCCCCceeEEec----------ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee---ecCCCCe
Q psy6213 77 VVWNLGQISRSKQERVFN----------DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF---HSNTESV 143 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~----------~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v 143 (330)
..++... ... ..+. .....|.++...+ ++ .|..|+.++-|..||..+++..... ......|
T Consensus 336 ~~~~~~~---~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v 409 (781)
T 3v9f_A 336 NFISNAP---PTF-HTWSYSPTQMNESSLSNKVVSSVCDDG-QG-KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSV 409 (781)
T ss_dssp EEECSSC---CSC-EEEC----CCCSSCCSSSCEEEEEECT-TS-CEEEEEBSSCEEEEETTEEEEECC-----CCCSBE
T ss_pred EEeCCCC---Ccc-eeeccCccccccCCCCCcceEEEEEcC-CC-CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcce
Confidence 8888765 221 1111 1235688887764 44 4666776667999987654332211 1234578
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec---cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc
Q psy6213 144 RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT---AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE 220 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 220 (330)
.++...+++. +..|+.++-+..+|.++. + ...+. .....|.++...+++. |..|+. +-+..||..+.+...
T Consensus 410 ~~i~~d~~g~--lWigt~~~Gl~~~~~~~~-~-~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~ 483 (781)
T 3v9f_A 410 LCSLKDSEGN--LWFGTYLGNISYYNTRLK-K-FQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIH 483 (781)
T ss_dssp EEEEECTTSC--EEEEETTEEEEEECSSSC-E-EEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCE
T ss_pred EEEEECCCCC--EEEEeccCCEEEEcCCCC-c-EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEe
Confidence 8998888876 556777677999998752 2 22222 2346788998888776 444555 558899987763322
Q ss_pred ceecc-----ccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec----CCCCeEEEEEecCCCEEEEee
Q psy6213 221 YSINT-----IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE----HKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 221 ~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~ 291 (330)
..... ...+.++...++|.. .++.. ++.|..||..+.+ ...+.. ....|.++...++|.+.++ +
T Consensus 484 ~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~---~~Gl~~~~~~~~~--~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T 556 (781)
T 3v9f_A 484 HYDTSNSQLLENFVRSIAQDSEGRF-WIGTF---GGGVGIYTPDMQL--VRKFNQYEGFCSNTINQIYRSSKGQMWLA-T 556 (781)
T ss_dssp EECTTTSSCSCSCEEEEEECTTCCE-EEEES---SSCEEEECTTCCE--EEEECTTTTCSCSCEEEEEECTTSCEEEE-E
T ss_pred cccCcccccccceeEEEEEcCCCCE-EEEEc---CCCEEEEeCCCCe--EEEccCCCCCCCCeeEEEEECCCCCEEEE-E
Confidence 21111 357899999999985 44432 4457778876653 222321 2356899999888886654 4
Q ss_pred cCCeEeeeec
Q psy6213 292 RVSIIPRAKN 301 (330)
Q Consensus 292 ~dg~i~iw~~ 301 (330)
.+|.+..|+.
T Consensus 557 ~~Glv~~~d~ 566 (781)
T 3v9f_A 557 GEGLVCFPSA 566 (781)
T ss_dssp TTEEEEESCT
T ss_pred CCCceEEECC
Confidence 4776477764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.6e-07 Score=69.13 Aligned_cols=203 Identities=8% Similarity=0.075 Sum_probs=135.7
Q ss_pred EecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec-CCCCeEEEEEcCCCCcEEEEEecCCcEEEEec
Q psy6213 92 VFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS-NTESVRDVEFNPHSPYAFASVSENGTIQQWDV 170 (330)
Q Consensus 92 ~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~ 170 (330)
.+.+-...+..++|.|+++.++++...++.|...|.. ++.++.+.. .......+++.+++. ++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEc
Confidence 4555667899999999555566667888899999987 777777642 235678899988886 4555556778999987
Q ss_pred CCCcc--ceeeec------cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCC---ccccce-------eccccceEEE
Q psy6213 171 RRPEK--CFYQFT------AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIK---PSLEYS-------INTIASVSRI 232 (330)
Q Consensus 171 ~~~~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~-------~~~~~~v~~~ 232 (330)
..... ...... ..+...-.++|+|.++.|+++.......+|.+... ...... ......+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 75442 111111 23445689999999887777776666666665421 011111 0123457899
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCC---------CCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK---------DVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
+++|....+++... ....|..+|..... +..+.-.. ....+|+|.++|++. ..++-..+++++.
T Consensus 179 ~~dp~tg~lliLS~--~s~~L~~~d~~g~~--~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSH--ESRALQEVTLVGEV--IGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEET--TTTEEEEECTTCCE--EEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-EEETTTEEEEEEC
T ss_pred EEcCCCCeEEEEEC--CCCeEEEEcCCCCE--EEEEEcCCccCCcccccCCCCeeEECCCCCEE-EEcCCceEEEEEe
Confidence 99998877777777 68999999977542 33332221 257899999999844 4577777777654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.97 E-value=9.6e-06 Score=68.06 Aligned_cols=244 Identities=9% Similarity=0.028 Sum_probs=146.1
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC-CceeEEeccccccee
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR-SKQERVFNDHKRTVN 101 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~i~ 101 (330)
...|+..+++......... ....+..++|.+.++.++.+-...+.|..+++..... ......+........
T Consensus 91 ~~~I~~i~l~~~~~~~~~~--------~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIP--------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp TTEEEEECTTSCSCEEEEC--------SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred cceeEEEccCCcceeEecc--------ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 6677777777654333221 1122488999984444555555678888888864210 112222332345677
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec-CCcEEEEecCCCccceeee
Q psy6213 102 KVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE-NGTIQQWDVRRPEKCFYQF 180 (330)
Q Consensus 102 ~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-dg~i~i~d~~~~~~~~~~~ 180 (330)
.+++.+.+++++++-...+.|.+.+++.......+.........+++.|.+.+++.+-.. .+.|...++.. .......
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG-~~~~~~~ 241 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV 241 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS-CSCEEEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC-CccEEEE
Confidence 888886456666666677899999987554444444344568899999987755555433 47888888874 2222222
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCccccceec--cccceEEEEEcCCCCeEEEEeecccCCeEEEEE
Q psy6213 181 TAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPSLEYSIN--TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257 (330)
Q Consensus 181 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d 257 (330)
...-...+.|++++++..|+.+. ..+.|..+|+........... .......+++. +..++.+.. ..+.|..+|
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~--~~~~V~~~~ 317 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDI--INEAIFSAN 317 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEES--SSCSEEEEE
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecC--CCCeEEEEE
Confidence 33335678999998776666554 567899999876533222211 22345567763 334566665 578899999
Q ss_pred ccCCCccceEeecCCCCeEEEEE
Q psy6213 258 IRRPYIPLASFTEHKDVVSGLAW 280 (330)
Q Consensus 258 ~~~~~~~~~~~~~~~~~v~~~~~ 280 (330)
..+++. ...+........+++.
T Consensus 318 ~~~G~~-~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 318 RLTGSD-VNLLAENLLSPEDMVL 339 (400)
T ss_dssp SSSCCC-CEEEECSCSCEEEEEE
T ss_pred cCCCCc-eEEEecCCCCCceEEE
Confidence 766654 4444433334555543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.4e-07 Score=78.79 Aligned_cols=258 Identities=11% Similarity=0.056 Sum_probs=144.3
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceee-eeecccCCcEEEEEcC------CCcEEEEECCCCCC
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCND-VAWSCIEENHIATGAT------NGAVVVWNLGQISR 86 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~ 86 (330)
+++.++.. |+.+..+|..+++..-......... ...+.+ ... .+..+++++. +|.|..+|..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~---~~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~t--- 185 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKV---GSTLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKT--- 185 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGG---TCBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTT---
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCc---cceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCC---
Confidence 44445555 9999999999998776554332110 001111 111 2345555554 78999999987
Q ss_pred CceeEEecccccc--------------------------------------eeEEEEEecCCCEEEEEecC---------
Q psy6213 87 SKQERVFNDHKRT--------------------------------------VNKVSFHYVESNWLISGSQD--------- 119 (330)
Q Consensus 87 ~~~~~~~~~~~~~--------------------------------------i~~i~~~~~~~~~l~~~~~d--------- 119 (330)
++.+-.+...... -..+++.+ +...++.+..+
T Consensus 186 G~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~g~~~~~~~~~~ 264 (571)
T 2ad6_A 186 GELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMR 264 (571)
T ss_dssp CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGS
T ss_pred CcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEECCCCccccCCcc
Confidence 4444333211100 02356666 45566655532
Q ss_pred -------CcEEEEEeecCceeeeeecCC----------CCeEEEEEcCCCC--cEEEEEecCCcEEEEecCCCccceeee
Q psy6213 120 -------GTMRLFDIRCQESTKIFHSNT----------ESVRDVEFNPHSP--YAFASVSENGTIQQWDVRRPEKCFYQF 180 (330)
Q Consensus 120 -------~~i~i~d~~~~~~~~~~~~~~----------~~v~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~ 180 (330)
+.|..+|.++++.+-.++... .++. +...++++ .+++.++.+|.++++|..++ +.+-..
T Consensus 265 ~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~~w~~ 342 (571)
T 2ad6_A 265 PGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENG-NLIVAE 342 (571)
T ss_dssp CSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTC-CEEEEE
T ss_pred CCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCC-CEEeee
Confidence 359999999999887765321 2221 22224563 35778889999999999874 333322
Q ss_pred ccCC-------------CCe--------------------------EEEEEcCCCCEEEEEe------------------
Q psy6213 181 TAHS-------------GPI--------------------------FACDWHPEHAWLATAS------------------ 203 (330)
Q Consensus 181 ~~~~-------------~~i--------------------------~~~~~~~~~~~l~~~~------------------ 203 (330)
+... .++ ..++++|+..++++..
T Consensus 343 ~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 422 (571)
T 2ad6_A 343 KVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQ 422 (571)
T ss_dssp ESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCC
Confidence 2110 111 2467888877776654
Q ss_pred -------------------cCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc
Q psy6213 204 -------------------RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP 264 (330)
Q Consensus 204 -------------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~ 264 (330)
.+|.|..||..+++..... .....+....+...+..+++ ++ .++.|+.+|.++++.
T Consensus 423 ~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~-~~~~~~~~~~~~t~gg~v~~-g~--~dg~l~a~D~~tG~~- 497 (571)
T 2ad6_A 423 FFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTK-WEKFAAWGGTLYTKGGLVWY-AT--LDGYLKALDNKDGKE- 497 (571)
T ss_dssp CCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEE-EESSCCCSBCEEETTTEEEE-EC--TTSEEEEEETTTCCE-
T ss_pred ccccccceeccCccccCCCCCCeEEEEECCCCCEEEEe-cCCCCccceeEEECCCEEEE-Ec--CCCeEEEEECCCCCE-
Confidence 2478999999888554332 22222222222223444455 44 599999999999986
Q ss_pred ceEeecCCC-CeEEEEEecCCCEEEE
Q psy6213 265 LASFTEHKD-VVSGLAWRGDPQLFIA 289 (330)
Q Consensus 265 ~~~~~~~~~-~v~~~~~~~~~~~l~s 289 (330)
+..+..... .-.-+.+..+|+.++.
T Consensus 498 lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 498 LWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 444443221 1122345567764443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.96 E-value=5.3e-07 Score=69.04 Aligned_cols=179 Identities=10% Similarity=0.077 Sum_probs=120.3
Q ss_pred ceEEEEeeCCCe-eecC-C--CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECC
Q psy6213 7 VHKHGLKADNGL-AQPS-R--NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLG 82 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g-d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 82 (330)
...+.|++ +.+ .++| . ..|+.+|+++++......+..... . ..++.. ++.+......++.+.+||..
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f-----g-eGi~~~--~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF-----G-AGIVAW--RDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC-----E-EEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc-----e-eEEEEe--CCEEEEEEeeCCEEEEEECC
Confidence 45888986 555 7777 4 599999999999887765543211 1 233443 45555666678999999998
Q ss_pred CCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCC-----CCeEEEEEcCCCCcEEE
Q psy6213 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNT-----ESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~ 157 (330)
+ .+.+.++.... .-..++ + ++..|+.+..++.|.++|..+.+.+..+.... ..++.+.+. ++. +++
T Consensus 94 t---l~~~~ti~~~~-~Gwglt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lya 164 (243)
T 3mbr_X 94 T---LTPRARFRYPG-EGWALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLA 164 (243)
T ss_dssp T---TEEEEEEECSS-CCCEEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEE
T ss_pred c---CcEEEEEeCCC-CceEEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEE
Confidence 8 67777766432 234444 4 44555555568899999999988877776422 245566765 454 666
Q ss_pred EEecCCcEEEEecCCCccceeeecc-------------CCCCeEEEEEcCCCCEEEEEec
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFTA-------------HSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
..-.+..|.+.|.++ ++.+..+.. .....+.|+++|+++.|++.+.
T Consensus 165 nvw~s~~I~vIDp~t-G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 165 NVWLTSRIARIDPAS-GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEECTTT-CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEECCC-CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 665688999999998 444443321 1235689999998777766664
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.5e-07 Score=81.14 Aligned_cols=242 Identities=12% Similarity=0.074 Sum_probs=130.7
Q ss_pred cceEEEEe-eCCCeeecC---C----CeEEEEEcCCc-ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC---
Q psy6213 6 PVHKHGLK-ADNGLAQPS---R----NVFKIFLIKDT-EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN--- 73 (330)
Q Consensus 6 ~v~~~~~s-~~~~~~~~g---d----~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--- 73 (330)
.+...+|| |||++++.+ + ..|+++|++++ +.... .+. .....++|+| +++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~--------~~~~~~~Wsp-Dg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS--------GTNGEIVWGP-DHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE--------EECSCCEECS-STTEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc--------CceeeEEEec-CCCEEEEEEECCCC
Confidence 56788999 999985533 2 25999999988 63211 111 1125789999 88777766654
Q ss_pred --CcEEEEECCCCCCCceeEEec-ccccceeEEEEEecCCCEEEEEec---CCcEEEEEeecCc-ee--eee-ecCCCCe
Q psy6213 74 --GAVVVWNLGQISRSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQ---DGTMRLFDIRCQE-ST--KIF-HSNTESV 143 (330)
Q Consensus 74 --g~i~iw~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~---d~~i~i~d~~~~~-~~--~~~-~~~~~~v 143 (330)
..|.++++.+.. ......+. ........+.|+| ++++|+..+. ...|+++|+.++. .. ..+ .......
T Consensus 245 ~~~~v~~~~lgt~~-~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 245 RENKVWRHVMGKLQ-SEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp CEEEEEEEETTSCG-GGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCEEEEEECCCCc-hhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 257788886621 11122222 2223456789998 7887776552 3468888887652 12 223 3234455
Q ss_pred EEEEEcCCCCcEEEEEecC----CcEEEEecCCCccceee-eccCCC--CeEEEEEcCCCCEEEEEecCCc--EEEEeC-
Q psy6213 144 RDVEFNPHSPYAFASVSEN----GTIQQWDVRRPEKCFYQ-FTAHSG--PIFACDWHPEHAWLATASRDKT--IKVWDL- 213 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~d----g~i~i~d~~~~~~~~~~-~~~~~~--~i~~~~~~~~~~~l~~~~~dg~--i~i~d~- 213 (330)
.++.|+. ++.+++....+ ..|..+|+.++ ..... +..+.. .+..+.+. .+.++++...++. |.++|+
T Consensus 323 ~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~ 399 (751)
T 2xe4_A 323 YDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMAD 399 (751)
T ss_dssp EEEEEET-TTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECC
T ss_pred EEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecc
Confidence 5555544 55455555544 25666676542 12222 223333 34555554 3345566667775 555565
Q ss_pred ------CCCc-cccceeccccceEEEEE----cCCCCeEEEEee-cccCCeEEEEEccCCC
Q psy6213 214 ------SIKP-SLEYSINTIASVSRIKW----RPQRKFHLASCS-LVVDSSVNVWDIRRPY 262 (330)
Q Consensus 214 ------~~~~-~~~~~~~~~~~v~~~~~----~~~~~~l~~~~~-~~~~~~i~i~d~~~~~ 262 (330)
..++ ...........+..+.+ ++++..++.+.+ ...-..+..+|+.+++
T Consensus 400 ~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 400 SQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred cccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2332 11111111222334433 456665555544 1122567778877664
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.9e-06 Score=64.61 Aligned_cols=197 Identities=8% Similarity=0.070 Sum_probs=127.1
Q ss_pred ccceEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 5 SPVHKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 5 ~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
+.+..++|+|++.. .++. ++.|...|.. ++....+.+... .....+++.+ ++.++++.-.++.+.++++
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~------~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV------KDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC------SSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC------CChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 46899999998765 4444 8888889988 777666544321 1136788887 7776666666788999988
Q ss_pred CCCCCCceeEEec------ccccceeEEEEEecCCCEEEEEecCCcEEEEEeec---Cceeeeee-------cCCCCeEE
Q psy6213 82 GQISRSKQERVFN------DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC---QESTKIFH-------SNTESVRD 145 (330)
Q Consensus 82 ~~~~~~~~~~~~~------~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~-------~~~~~v~~ 145 (330)
............. ........++|.| .++.|.++.......+|.++. ...+..+. .....+..
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence 7633211122221 2334568999998 565666666655566666651 11122221 12345789
Q ss_pred EEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccC---------CCCeEEEEEcCCCCEEEEEecCCcEEEEeC
Q psy6213 146 VEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH---------SGPIFACDWHPEHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 146 ~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 213 (330)
++++|...++++....+..+..+|.+. +.+..+.-. -...-.|+|.++|++.++ ++-+.++.|.-
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 999999888888888889999999774 333332211 125689999999985555 66666666643
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.92 E-value=8.9e-08 Score=85.95 Aligned_cols=274 Identities=7% Similarity=-0.003 Sum_probs=144.6
Q ss_pred EEEEee-CCCe-eecC-CC-----------eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-C
Q psy6213 9 KHGLKA-DNGL-AQPS-RN-----------VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-N 73 (330)
Q Consensus 9 ~~~~s~-~~~~-~~~g-d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d 73 (330)
++++.| +|++ +.+| +. .+.+||..+++........... ...+.++++.+ ++.+++.|+. +
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~----~~~~~~~~~~~-~g~lyv~GG~~~ 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH----DMFCPGISMDG-NGQIVVTGGNDA 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC----CCSSCEEEECT-TSCEEEECSSST
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC----CCccccccCCC-CCCEEEeCCCCC
Confidence 567777 8888 4444 22 6889999887754433222111 11124467777 8899999884 4
Q ss_pred CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEe-cC-----CcEEEEEeecCceeeee----ecCCCCe
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGS-QD-----GTMRLFDIRCQESTKIF----HSNTESV 143 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~d-----~~i~i~d~~~~~~~~~~----~~~~~~v 143 (330)
..+.+||..+. .......+... ..-.+++..+ ++++++.|+ .+ ..+.+||..+.+-...- ......-
T Consensus 265 ~~v~~yd~~t~-~W~~~~~~~~~-R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~ 341 (656)
T 1k3i_A 265 KKTSLYDSSSD-SWIPGPDMQVA-RGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD 341 (656)
T ss_dssp TCEEEEEGGGT-EEEECCCCSSC-CSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred CceEEecCcCC-ceeECCCCCcc-ccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc
Confidence 57999998762 12222212111 1122344444 788888888 34 56899998776533210 0000000
Q ss_pred EEEEEcCCCCcEEEEEecCC---------cEEEEecCCCccceeeeccCC---------CCeEEEEEcC-CCCEEEEEec
Q psy6213 144 RDVEFNPHSPYAFASVSENG---------TIQQWDVRRPEKCFYQFTAHS---------GPIFACDWHP-EHAWLATASR 204 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~---------~~i~~~~~~~-~~~~l~~~~~ 204 (330)
....+..++. +++.++.+| .+..||..+... ......+. ..-.++.|.. ++++++.|+.
T Consensus 342 ~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~ 419 (656)
T 1k3i_A 342 KQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 419 (656)
T ss_dssp TTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred ccceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence 0011223333 455665544 467788876331 11111111 1223444433 6788888885
Q ss_pred CC-----------cEEEEeCCCCccccc---eeccccceEEEEEcCCCCeEEEEeecc--------cCCeEEEEEccCCC
Q psy6213 205 DK-----------TIKVWDLSIKPSLEY---SINTIASVSRIKWRPQRKFHLASCSLV--------VDSSVNVWDIRRPY 262 (330)
Q Consensus 205 dg-----------~i~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~~--------~~~~i~i~d~~~~~ 262 (330)
++ .+.+||..+..-... ..+....-.+++..|+++.+++++... .-..+.+||..+.+
T Consensus 420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 420 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 43 577888776532211 112222234556678998655555310 02568999987654
Q ss_pred cc-ceEeecCCCCeEEEEEecCCCEEEEeec
Q psy6213 263 IP-LASFTEHKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 263 ~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
-. +..+...........+.||+++++.|+.
T Consensus 500 W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 500 FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 21 1111111112234456689999999885
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-06 Score=77.95 Aligned_cols=261 Identities=9% Similarity=0.096 Sum_probs=148.3
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeecccccccccee-eeeecccCCcEEEEEcC------CCcEEEEECCCCCC
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCN-DVAWSCIEENHIATGAT------NGAVVVWNLGQISR 86 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~ 86 (330)
+++.++.. |+.|..+|.++|+..-......... ...+. .... .+..++++.. +|.|..+|..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~---~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~t--- 187 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK---PYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADT--- 187 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS---SCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTT---
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC---cceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCC---
Confidence 44445555 9999999999998776554421110 00001 1111 2344555543 58899999987
Q ss_pred CceeEEeccc-------------------------------ccceeEEEEEecCCCEEEEEecCC---------------
Q psy6213 87 SKQERVFNDH-------------------------------KRTVNKVSFHYVESNWLISGSQDG--------------- 120 (330)
Q Consensus 87 ~~~~~~~~~~-------------------------------~~~i~~i~~~~~~~~~l~~~~~d~--------------- 120 (330)
++.+-.+... ......+++.| +.++++.++.++
T Consensus 188 G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~ 266 (668)
T 1kv9_A 188 GKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDN 266 (668)
T ss_dssp CCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCC
T ss_pred CcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCc
Confidence 4444433210 01112467777 667888877665
Q ss_pred ----cEEEEEeecCceeeeeecC--C-------CCeEEEEEcCCCC--cEEEEEecCCcEEEEecCCCccceeeeccCC-
Q psy6213 121 ----TMRLFDIRCQESTKIFHSN--T-------ESVRDVEFNPHSP--YAFASVSENGTIQQWDVRRPEKCFYQFTAHS- 184 (330)
Q Consensus 121 ----~i~i~d~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~- 184 (330)
.|..+|.++++.+-.++.. . .+.....+..+++ ..++.++.+|.++++|.+++ +.+...+...
T Consensus 267 l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~ 345 (668)
T 1kv9_A 267 LYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKV 345 (668)
T ss_dssp TTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC-CEEEEEESSCC
T ss_pred eeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC-CEecccccccc
Confidence 3999999999988777642 1 2222223333443 25888899999999999884 3331111000
Q ss_pred -----------CC------------------------eEEEEEcCCCCEEEEEe--------------------------
Q psy6213 185 -----------GP------------------------IFACDWHPEHAWLATAS-------------------------- 203 (330)
Q Consensus 185 -----------~~------------------------i~~~~~~~~~~~l~~~~-------------------------- 203 (330)
.+ -..++++|+..+++...
T Consensus 346 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 425 (668)
T 1kv9_A 346 TWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGF 425 (668)
T ss_dssp CSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCG
T ss_pred ccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccc
Confidence 00 11267888766665421
Q ss_pred ----------cCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCC
Q psy6213 204 ----------RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKD 273 (330)
Q Consensus 204 ----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 273 (330)
.+|.|..||+.+++..... ....+.....+...+..++++ + .++.++.||.++++. +..+.....
T Consensus 426 ~~~~~~p~~~~~g~l~A~D~~tG~~~W~~-~~~~~~~~~~~~t~gg~vf~g-~--~dg~l~a~d~~tG~~-l~~~~~~~~ 500 (668)
T 1kv9_A 426 ADATDVPAAVVSGALLAWDPVKQKAAWKV-PYPTHWNGGTLSTAGNLVFQG-T--AAGQMHAYSADKGEA-LWQFEAQSG 500 (668)
T ss_dssp GGCCCCCGGGCEEEEEEEETTTTEEEEEE-EESSSCCCCEEEETTTEEEEE-C--TTSEEEEEETTTCCE-EEEEECSSC
T ss_pred cccCCCCCCCccceEEEEeCCCCcEEEEc-cCCCCCcCceeEeCCCEEEEE-C--CcccchhhhhhcChh-heEecCCCC
Confidence 2377999999988554332 222333333334455554554 5 699999999999976 555544322
Q ss_pred Ce-EEEEEecCCC-EEEEee
Q psy6213 274 VV-SGLAWRGDPQ-LFIASS 291 (330)
Q Consensus 274 ~v-~~~~~~~~~~-~l~s~~ 291 (330)
.. .-+.+..+|+ +++.++
T Consensus 501 ~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 501 IVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCSCCEEEEETTEEEEEEEE
T ss_pred cccCceEEEECCEEEEEEEe
Confidence 11 2233444665 444443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-06 Score=72.92 Aligned_cols=238 Identities=11% Similarity=0.110 Sum_probs=139.6
Q ss_pred cceEEEEee-C-CCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-CC----cEE
Q psy6213 6 PVHKHGLKA-D-NGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-NG----AVV 77 (330)
Q Consensus 6 ~v~~~~~s~-~-~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~i~ 77 (330)
....++++| + +.+.++. .+.|+.+|++.+....... . ......++|++ +++.|+++.. ++ .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~------~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--G------LSKVRTICWTH-EADSMIITNDQNNNDRPNNY 208 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--C------CSCEEEEEECT-TSSEEEEEECCSCTTSEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--C------CCCcceEEEeC-CCCEEEEEeCCCCcccceEE
Confidence 457889997 3 4445554 6889999988766543322 1 11248899999 8885555543 22 233
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec-CCCCeEEEEEcCCCCcEE
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS-NTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~ 156 (330)
.++... .......+. .......++++|.++.++++-..++.|..++..++........ .......++|+|++++++
T Consensus 209 ~~~~~g--~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 209 ILTRES--GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAY 285 (430)
T ss_dssp EEEGGG--TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEE
T ss_pred EEeCCC--ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEE
Confidence 344322 111112222 1234577889885677676766778999999876654222222 224578899999999767
Q ss_pred EEEecCCcEEEEecCCCccc---eeeeccC---------------CCCeE-EEEEc--------CCCCEEEEEecCCcEE
Q psy6213 157 ASVSENGTIQQWDVRRPEKC---FYQFTAH---------------SGPIF-ACDWH--------PEHAWLATASRDKTIK 209 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~---~~~~~~~---------------~~~i~-~~~~~--------~~~~~l~~~~~dg~i~ 209 (330)
++-...+.|..++....... ...+.+. -.... .++.. +++.+.++-...+.|+
T Consensus 286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 77677888999887632111 1111111 11123 45543 3466666666677888
Q ss_pred EEeCCCCccccceecc------------------ccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 210 VWDLSIKPSLEYSINT------------------IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 210 i~d~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
.++.. +.. ...... -.....++++|++..|+++-. .+..|+.++++
T Consensus 366 ~i~~~-G~v-~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~--~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILTPQ-GRV-TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDR--ENRRIRKIGYE 429 (430)
T ss_dssp EECTT-SEE-EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG--GGTEEEEEEEC
T ss_pred EECCC-CcE-EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEEC--CCCeEEEEccC
Confidence 88843 322 111111 125789999996444566665 57888888764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-06 Score=71.05 Aligned_cols=233 Identities=11% Similarity=0.117 Sum_probs=133.1
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec-CC----cEEEEEee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ-DG----TMRLFDIR 128 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-d~----~i~i~d~~ 128 (330)
...++++|.++..|+++...+.|+.+|+.. .. +..+.........+++++ +++.|+++.. ++ .+..++.
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~---~~-v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEK---EY-VSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTT---TE-EEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCC---CE-EEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-
Confidence 378899872134455554447899999876 33 333333445688999998 7775555543 22 2333443
Q ss_pred cCcee--eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec-cCCCCeEEEEEcCCCCEE-EEEec
Q psy6213 129 CQEST--KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT-AHSGPIFACDWHPEHAWL-ATASR 204 (330)
Q Consensus 129 ~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l-~~~~~ 204 (330)
.+... ..+.. ......++++|++.+++++-..++.|..++...... ..... ........++|+|+|++| ++-..
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 33222 22322 234567889995444677766788999999875322 11111 122456789999999954 45556
Q ss_pred CCcEEEEeCCCCc-c---ccceec---------------cccceE-EEEEc--------CCCCeEEEEeecccCCeEEEE
Q psy6213 205 DKTIKVWDLSIKP-S---LEYSIN---------------TIASVS-RIKWR--------PQRKFHLASCSLVVDSSVNVW 256 (330)
Q Consensus 205 dg~i~i~d~~~~~-~---~~~~~~---------------~~~~v~-~~~~~--------~~~~~l~~~~~~~~~~~i~i~ 256 (330)
.+.|..++..... . ...... ...... .++.. +++. |+++-. ..+.|+.+
T Consensus 291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~--~n~~I~~i 367 (430)
T 3tc9_A 291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDR--ENHCIRIL 367 (430)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEG--GGTEEEEE
T ss_pred CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEEC--CCcEEEEE
Confidence 7889998865321 0 000000 011233 45553 3344 455544 47888888
Q ss_pred EccCCCccceEeecC------------------CCCeEEEEEecC-CCEEEEeecCCeEeeee
Q psy6213 257 DIRRPYIPLASFTEH------------------KDVVSGLAWRGD-PQLFIASSRVSIIPRAK 300 (330)
Q Consensus 257 d~~~~~~~~~~~~~~------------------~~~v~~~~~~~~-~~~l~s~~~dg~i~iw~ 300 (330)
+. .+. +..+.+. -....+++++|+ +.++++-.....|+...
T Consensus 368 ~~-~G~--v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 368 TP-QGR--VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp CT-TSE--EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CC-CCc--EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 84 332 2333221 124789999994 66666555667777664
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-06 Score=74.01 Aligned_cols=238 Identities=10% Similarity=0.072 Sum_probs=141.1
Q ss_pred ccceEEEEeeC---CCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC---C-cE
Q psy6213 5 SPVHKHGLKAD---NGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN---G-AV 76 (330)
Q Consensus 5 ~~v~~~~~s~~---~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i 76 (330)
.....++|+|+ |.+.++. .+.|+.++..++....... . ......+++++ +++++++.... . .+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-------~-~~~P~giavd~-dG~lyVad~~~~~~~~gv 209 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-------N-IGQCADVNFTL-NGDMVVVDDQSSDTNTGI 209 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-------C-CSCEEEEEECT-TCCEEEEECCSCTTSEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-------C-CCCccEEEECC-CCCEEEEcCCCCcccceE
Confidence 34578999985 6665555 6889999988776554332 1 11248999999 88844444321 1 13
Q ss_pred EEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee-ec-CCCCeEEEEEcCCCCc
Q psy6213 77 VVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF-HS-NTESVRDVEFNPHSPY 154 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~ 154 (330)
...+.... ......+. .-.....+++.|.++.++++-..++.|+.+|..++.....+ .. ....-..++|+|++++
T Consensus 210 ~~~~~~~~--~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 210 YLFTRASG--FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp EEECGGGT--TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred EEEECCCC--eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 33332221 11111121 22445678888756666666666788999998766652222 21 1223347999999986
Q ss_pred EEEEEecCCcEEEEecCCCccc---eeeecc---------------CCCCeEEEEE---------cCCCCEEEEEecCCc
Q psy6213 155 AFASVSENGTIQQWDVRRPEKC---FYQFTA---------------HSGPIFACDW---------HPEHAWLATASRDKT 207 (330)
Q Consensus 155 ~~~~~~~dg~i~i~d~~~~~~~---~~~~~~---------------~~~~i~~~~~---------~~~~~~l~~~~~dg~ 207 (330)
++++-...+.|+.++....... ...+.+ .-.....+++ .+++.++++-...+.
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 6677677788999886531111 111111 1123667899 677777777777788
Q ss_pred EEEEeCCCCccccceec------------------cccceEEEEEc-CCCCeEEEEeecccCCeEEEEEcc
Q psy6213 208 IKVWDLSIKPSLEYSIN------------------TIASVSRIKWR-PQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 208 i~i~d~~~~~~~~~~~~------------------~~~~v~~~~~~-~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
|+.++.. +.. ..... .......++++ +++. |+++-. .++.|+.++++
T Consensus 367 I~~~~~~-G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~--~n~rIr~i~~e 432 (433)
T 4hw6_A 367 VRVLTPE-GRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDC--DNHRVRKIAPE 432 (433)
T ss_dssp EEEECTT-SEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEG--GGTEEEEEEEC
T ss_pred EEEECCC-CCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE-EEEEeC--CCCEEEEEecC
Confidence 9999853 311 11111 12347789999 5555 565555 57888888764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.1e-06 Score=74.52 Aligned_cols=205 Identities=9% Similarity=0.024 Sum_probs=126.6
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCC-CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISR-SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
+..++|.+.++.++++-...+.|+.+++..... ......+.........|++.+.+++++++-...+.|.+.+++....
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~ 505 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 505 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE
Confidence 478899884455555656677888888865211 1222333333456678898874556666777788999999875544
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEEecC-CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe-cCCcEEE
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASVSEN-GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS-RDKTIKV 210 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i 210 (330)
...+.........|++.|.+.+++++-... +.|...++.. ......+...-.....|++++.+..|+.+. ..+.|..
T Consensus 506 ~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~ 584 (791)
T 3m0c_C 506 KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584 (791)
T ss_dssp EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEE
Confidence 333443445688999999877555554333 6788888874 222222333345788999998666665554 5567999
Q ss_pred EeCCCCccccceec--cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 211 WDLSIKPSLEYSIN--TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 211 ~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
+++........... .......|++.. .+|+.+-. ..+.|...|..+++.
T Consensus 585 ~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~--~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 585 IDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDI--INEAIFSANRLTGSD 635 (791)
T ss_dssp EETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEET--TTTEEEEEETTTCCC
T ss_pred EecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEEC--CCCEEEEEeCCCCcc
Confidence 99876533222221 123445666643 35666665 578888888766643
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-06 Score=79.29 Aligned_cols=195 Identities=8% Similarity=0.031 Sum_probs=112.1
Q ss_pred ceeeeeec-ccCCcEEEEEcC-CC----cEEEEECCCCCCCceeE-EecccccceeEEEEEecCCCEEEEEecC-----C
Q psy6213 53 SCNDVAWS-CIEENHIATGAT-NG----AVVVWNLGQISRSKQER-VFNDHKRTVNKVSFHYVESNWLISGSQD-----G 120 (330)
Q Consensus 53 ~v~~~~~~-~~~~~~l~~~~~-dg----~i~iw~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~~~~~d-----~ 120 (330)
.+...+|| | ++++||.+.. +| .|+++|+.+.. +.+. .+ ......+.|+| +++.|+....+ .
T Consensus 175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~--~~l~~~~---~~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPS--QTIADKV---SGTNGEIVWGP-DHTSLFYVTKDETLREN 247 (751)
T ss_dssp EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTT--CCCCCCE---EEECSCCEECS-STTEEEEEEECTTCCEE
T ss_pred EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCC--EeCCccc---cCceeeEEEec-CCCEEEEEEECCCCCCC
Confidence 46789999 9 8888875533 23 49999998730 2111 11 12245788999 77777666654 2
Q ss_pred cEEEEEeecCce--eeeeec-CCCCeEEEEEcCCCCcEEEEEec--CCcEEEEecCCCccce--eee-ccCCCCeEEEEE
Q psy6213 121 TMRLFDIRCQES--TKIFHS-NTESVRDVEFNPHSPYAFASVSE--NGTIQQWDVRRPEKCF--YQF-TAHSGPIFACDW 192 (330)
Q Consensus 121 ~i~i~d~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~--dg~i~i~d~~~~~~~~--~~~-~~~~~~i~~~~~ 192 (330)
.|+.+++.+++. ...+.. .......+.|+|++++++++... ...|+++|+.++.... ..+ ....+...++.|
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~ 327 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM 327 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE
T ss_pred EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee
Confidence 578888876542 233332 23446788999999976665543 3458888987642222 323 333445566665
Q ss_pred cCCCCEEEEEecC----CcEEEEeCCCCccccc-eecccc--ceEEEEEcCCCCeEEEEeecccCCe--EEEEEc
Q psy6213 193 HPEHAWLATASRD----KTIKVWDLSIKPSLEY-SINTIA--SVSRIKWRPQRKFHLASCSLVVDSS--VNVWDI 258 (330)
Q Consensus 193 ~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~--i~i~d~ 258 (330)
+..+.+++....+ ..|..+|+.+...... ...+.. .+..+.+ .+..++++.. .++. |.++++
T Consensus 328 ~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~--~~g~~~l~~~dl 398 (751)
T 2xe4_A 328 HGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR--RAGLTRIWTMMA 398 (751)
T ss_dssp ETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE--ETTEEEEEEEEC
T ss_pred eeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE--eCCEEEEEEEec
Confidence 5444444444443 2567777764322222 233333 3445555 4566777776 5775 555564
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.8e-05 Score=67.54 Aligned_cols=229 Identities=8% Similarity=0.009 Sum_probs=143.0
Q ss_pred eeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEeccc
Q psy6213 18 LAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDH 96 (330)
Q Consensus 18 ~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 96 (330)
+|... .+.|+..++++.+......... + ..+..++|.+.++.++.+-..++.|..++++. ......+...
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~-----~-~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g---~~~~~v~~~g 78 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNNNNVAIPLTG-----V-KEASALDFDVTDNRIYWTDISLKTISRAFMNG---SALEHVVEFG 78 (628)
T ss_dssp EEEEEETTEEEEEESSCTTCEEECCCCS-----C-SCEEEEEEETTTTEEEEEETTTTEEEEEETTS---CSCEEEECSS
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcCC-----C-CceEEEEEECCCCEEEEEECCCCeEEEEECCC---CCcEEEEeCC
Confidence 43334 7788899998755333222211 1 12478999984555555666678899998875 2222223322
Q ss_pred ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE-ecCCcEEEEecCCCcc
Q psy6213 97 KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV-SENGTIQQWDVRRPEK 175 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~~ 175 (330)
......+++.+.+++++++-...+.|.+.+++.......+...-.....+++.|...+++.+- +..+.|...++...
T Consensus 79 ~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~-- 156 (628)
T 4a0p_A 79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS-- 156 (628)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--
T ss_pred CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC--
Confidence 245778888874566666666678899999875443333323445678999999766555543 22567888887642
Q ss_pred ceeeeccCCCCeEEEEEcCCCCEEEEE-ecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEE
Q psy6213 176 CFYQFTAHSGPIFACDWHPEHAWLATA-SRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVN 254 (330)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~ 254 (330)
....+...-.....++++++++.|..+ ...+.|..+|+..... ............+++.. ..++.+.. ..+.|.
T Consensus 157 ~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~tD~--~~~~I~ 231 (628)
T 4a0p_A 157 ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWTDW--SRRSIE 231 (628)
T ss_dssp SCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEEET--TTTEEE
T ss_pred ceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEecC--CCCEEE
Confidence 223333345678899999976655555 4567899999876533 22223334556777765 34566665 578899
Q ss_pred EEEccCCC
Q psy6213 255 VWDIRRPY 262 (330)
Q Consensus 255 i~d~~~~~ 262 (330)
..|..+++
T Consensus 232 ~~dk~tg~ 239 (628)
T 4a0p_A 232 RANKTSGQ 239 (628)
T ss_dssp EEETTTCC
T ss_pred EEECCCCC
Confidence 88876554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.7e-06 Score=72.32 Aligned_cols=273 Identities=13% Similarity=0.091 Sum_probs=154.9
Q ss_pred CCCe-eecC-CCeEEEEEc-CCcceeeeeceeeccc-cc---cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC
Q psy6213 15 DNGL-AQPS-RNVFKIFLI-KDTEFVETHNLRVGKN-IN---LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS 87 (330)
Q Consensus 15 ~~~~-~~~g-d~~i~iw~~-~~~~~~~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 87 (330)
++.. +.+. ++.|.-+|. ++++.+-.+....... .. .......++. .+..+++++.|+.+..+|..+ +
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~~t---G 135 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY---GAGQIVKKQANGHLLALDAKT---G 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEETTT---C
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE---ECCEEEEEeCCCEEEEEECCC---C
Confidence 4444 4444 688999999 8888765554432211 00 0000011222 356788888899999999988 4
Q ss_pred ceeEEec--cccc--ceeE-EEEEecCCCEEEEEec------CCcEEEEEeecCceeeeeecCCCC--------------
Q psy6213 88 KQERVFN--DHKR--TVNK-VSFHYVESNWLISGSQ------DGTMRLFDIRCQESTKIFHSNTES-------------- 142 (330)
Q Consensus 88 ~~~~~~~--~~~~--~i~~-i~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~-------------- 142 (330)
+.+-... .+.. .+.+ .... + ..+++++. ++.|+.+|.++++.+-.+......
T Consensus 136 ~~~W~~~~~~~~~~~~~~~~P~v~--~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 136 KINWEVEVCDPKVGSTLTQAPFVA--K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE--T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEEecCCCCCccceeccCCEEE--C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 5444332 1110 1211 1111 3 45555554 789999999999987766532110
Q ss_pred ------------------------eEEEEEcCCCCcEEEEEecC----------------CcEEEEecCCCccceeeecc
Q psy6213 143 ------------------------VRDVEFNPHSPYAFASVSEN----------------GTIQQWDVRRPEKCFYQFTA 182 (330)
Q Consensus 143 ------------------------v~~~~~~~~~~~~~~~~~~d----------------g~i~i~d~~~~~~~~~~~~~ 182 (330)
...+++.++.. +++.+..+ +.|..+|.+++ +.+-.++.
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG-~~~W~~~~ 290 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG-MAKWGYQK 290 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC-CEEEEEES
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCC-cEEEEecC
Confidence 01355666655 45555432 25899999884 44433331
Q ss_pred --CC--------CCeEEEEEcCCCC---EEEEEecCCcEEEEeCCCCccccceeccc-------------cce-------
Q psy6213 183 --HS--------GPIFACDWHPEHA---WLATASRDKTIKVWDLSIKPSLEYSINTI-------------ASV------- 229 (330)
Q Consensus 183 --~~--------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v------- 229 (330)
|. .++ -+...++|+ .++.++.+|.+.++|..+++.+....... .++
T Consensus 291 ~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 369 (571)
T 2ad6_A 291 TPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFAT 369 (571)
T ss_dssp STTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCC
T ss_pred CCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCC
Confidence 21 111 122224674 57788899999999998885532211100 111
Q ss_pred -------------------EEEEEcCCCCeEEEEeec----------------------------------ccCCeEEEE
Q psy6213 230 -------------------SRIKWRPQRKFHLASCSL----------------------------------VVDSSVNVW 256 (330)
Q Consensus 230 -------------------~~~~~~~~~~~l~~~~~~----------------------------------~~~~~i~i~ 256 (330)
..++++|+...+++.... ..++.|..|
T Consensus 370 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~ 449 (571)
T 2ad6_A 370 RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAF 449 (571)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEE
T ss_pred CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEE
Confidence 235778887765554320 025789999
Q ss_pred EccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 257 DIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 257 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
|..+++. +-.... ...+.+......+..++.++.||.|+.++.
T Consensus 450 D~~tG~~-~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 450 DLTTGKA-KWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp CTTTCCE-EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred ECCCCCE-EEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 9998875 333332 222333333335667788999999999974
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.5e-05 Score=70.95 Aligned_cols=225 Identities=13% Similarity=-0.001 Sum_probs=138.1
Q ss_pred EEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC----ceeeeeecCCC
Q psy6213 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ----ESTKIFHSNTE 141 (330)
Q Consensus 66 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~ 141 (330)
+|+.+. ...|+..++.. ..... +......+..++|.+.++.++++-...+.|+.+++... .....+.....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~---~~~~~-l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~ 471 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDR---SEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471 (791)
T ss_dssp EEEEEC-BSSEEEECTTS---CCCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred cccccc-ccceeEeeccC---Cccee-eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC
Confidence 444443 34577777765 22222 22334567889999745556666666788999988753 22333333445
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe-cC-CcEEEEeCCCCccc
Q psy6213 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS-RD-KTIKVWDLSIKPSL 219 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~ 219 (330)
....|++.+.+.+++++-...+.|.+.++.. ......+.........|+++|.+..|+... .. +.|...++......
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG-~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCC-CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 5778999988876777777788999999875 222222333445688999999765555554 33 67888888765333
Q ss_pred cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC--CCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 220 EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH--KDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 220 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
............|++++.+..|+.+-. ..+.|..+++..... ....... -....+|+...+ .+.++-...+.|.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~--~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIF 626 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeC--CCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEE
Confidence 333333467899999988887777766 678999999976543 2233221 223456666432 3333334445665
Q ss_pred eee
Q psy6213 298 RAK 300 (330)
Q Consensus 298 iw~ 300 (330)
...
T Consensus 627 ~~d 629 (791)
T 3m0c_C 627 SAN 629 (791)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8e-06 Score=71.95 Aligned_cols=196 Identities=12% Similarity=0.112 Sum_probs=112.8
Q ss_pred CCCe-eecC-CCeEEEEEc-CCcceeeeeceeeccccc----cccceeeeeecccCCcE----EEEEcCCCcEEEEECCC
Q psy6213 15 DNGL-AQPS-RNVFKIFLI-KDTEFVETHNLRVGKNIN----LNFSCNDVAWSCIEENH----IATGATNGAVVVWNLGQ 83 (330)
Q Consensus 15 ~~~~-~~~g-d~~i~iw~~-~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~----l~~~~~dg~i~iw~~~~ 83 (330)
++.+ +.+. ++.|.-+|. ++++.+-.+......... .......++++| .+.. +++++.|+.+..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEEEEECCC
Confidence 4444 4444 688999999 888876655543321100 000012345544 3344 88888899999999988
Q ss_pred CCCCceeEEecccc----cceeE-EEEEecCCCEEEEEe------cCCcEEEEEeecCceeeeeecCCCC----------
Q psy6213 84 ISRSKQERVFNDHK----RTVNK-VSFHYVESNWLISGS------QDGTMRLFDIRCQESTKIFHSNTES---------- 142 (330)
Q Consensus 84 ~~~~~~~~~~~~~~----~~i~~-i~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~---------- 142 (330)
++.+-...... ..+.+ -... ++ .+++++ .++.|+.+|.++++.+-.+......
T Consensus 141 ---G~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~ 214 (599)
T 1w6s_A 141 ---GETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN 214 (599)
T ss_dssp ---CCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred ---CCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence 45443332211 01211 1122 34 455554 3789999999999987666532211
Q ss_pred ---------------------------e-EEEEEcCCCCcEEEEEecC----------------CcEEEEecCCCcccee
Q psy6213 143 ---------------------------V-RDVEFNPHSPYAFASVSEN----------------GTIQQWDVRRPEKCFY 178 (330)
Q Consensus 143 ---------------------------v-~~~~~~~~~~~~~~~~~~d----------------g~i~i~d~~~~~~~~~ 178 (330)
+ ..+++.+... +++.+..+ +.|..+|.+++ +..-
T Consensus 215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG-~~~W 292 (599)
T 1w6s_A 215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-EAKF 292 (599)
T ss_dssp TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-CEEE
T ss_pred cccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceEEEEeCCCC-ceee
Confidence 0 1345666666 56666554 37899999884 4443
Q ss_pred eecc--CCC-------CeEEEEEc-CCC---CEEEEEecCCcEEEEeCCCCccc
Q psy6213 179 QFTA--HSG-------PIFACDWH-PEH---AWLATASRDKTIKVWDLSIKPSL 219 (330)
Q Consensus 179 ~~~~--~~~-------~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~ 219 (330)
.++. |.. ...-+... .+| ..++.++.+|.+.++|.++++.+
T Consensus 293 ~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 346 (599)
T 1w6s_A 293 GYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV 346 (599)
T ss_dssp EEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred EeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence 3332 211 11112222 467 56778889999999999988653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-05 Score=67.37 Aligned_cols=236 Identities=9% Similarity=0.096 Sum_probs=134.7
Q ss_pred eeeeeeccc-CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC---C-cEEEEEee
Q psy6213 54 CNDVAWSCI-EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD---G-TMRLFDIR 128 (330)
Q Consensus 54 v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d---~-~i~i~d~~ 128 (330)
...++|.|+ ++..|+.+...+.|+.++..+ .... .+.........+++++ +++++++.... . .+...+..
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~---g~v~-~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN---QYVD-IKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTT---TEEE-EECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGG
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCC---CEEE-EeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECC
Confidence 378999983 244555555448899999865 3333 3333445688999998 77754444321 1 23333332
Q ss_pred cCce-eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc-CCCCeEEEEEcCCCCEEE-EEecC
Q psy6213 129 CQES-TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA-HSGPIFACDWHPEHAWLA-TASRD 205 (330)
Q Consensus 129 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~-~~~~d 205 (330)
.+.. ...+. .......++++|++.+++++-..++.|+.+|..++......+.. ....-..++|+|+++.|+ +-...
T Consensus 216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 2211 01222 22345678899944446666666788999998753221111111 122234699999998554 44566
Q ss_pred CcEEEEeCCC--Ccc--ccceec---------------cccceEEEEE---------cCCCCeEEEEeecccCCeEEEEE
Q psy6213 206 KTIKVWDLSI--KPS--LEYSIN---------------TIASVSRIKW---------RPQRKFHLASCSLVVDSSVNVWD 257 (330)
Q Consensus 206 g~i~i~d~~~--~~~--~~~~~~---------------~~~~v~~~~~---------~~~~~~l~~~~~~~~~~~i~i~d 257 (330)
+.|+.++... +.. ...... .......+++ .+++. |+++-. ..+.|+.++
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~--~n~~I~~~~ 371 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDR--DSHTVRVLT 371 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEET--TTTEEEEEC
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEEC--CCCEEEEEC
Confidence 7899988653 211 001111 1234677899 66666 455554 578999998
Q ss_pred ccCCCccceEeecC------------------CCCeEEEEEe-cCCCEEEEeecCCeEeeeec
Q psy6213 258 IRRPYIPLASFTEH------------------KDVVSGLAWR-GDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 258 ~~~~~~~~~~~~~~------------------~~~v~~~~~~-~~~~~l~s~~~dg~i~iw~~ 301 (330)
. ++. +..+.+. -....+++++ +++.++++=...+.|+....
T Consensus 372 ~-~G~--v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 372 P-EGR--VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp T-TSE--EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred C-CCC--EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 5 332 3333221 1237789999 56766666566677777643
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-05 Score=68.62 Aligned_cols=247 Identities=11% Similarity=0.088 Sum_probs=145.7
Q ss_pred cceEEEEeeC--CCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeee-------cccCCcEEEEEcCCC
Q psy6213 6 PVHKHGLKAD--NGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAW-------SCIEENHIATGATNG 74 (330)
Q Consensus 6 ~v~~~~~s~~--~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~~l~~~~~dg 74 (330)
....|+|+|. ++++++. .+.|++.|++++.+......... .. .....++| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~---~~-~~p~~ia~~~~~~~~d~-~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI---PT-NRIRSIAFNKKIEGYAD-EAEYMIVAIDYD 214 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS---SC-SBEEEEEECCCBTTTBC-TTCEEEEEECCC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc---cc-CCCcEEEEeecccccCC-CCCEEEEEeCCC
Confidence 3568999983 4444444 56788889888776654432110 11 12488999 98 777666655443
Q ss_pred -------cEEEEECCCCCCCc--e-eEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEee-------cCce-----
Q psy6213 75 -------AVVVWNLGQISRSK--Q-ERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR-------CQES----- 132 (330)
Q Consensus 75 -------~i~iw~~~~~~~~~--~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~~----- 132 (330)
.|.+++........ . ...+.. -.....++++|.++.++++-..++.|+.+|+. ++..
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred CCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 26666543311111 0 022222 23456788898667777777788899999998 4543
Q ss_pred ------eee-eec-CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccce---eeeccC---------------CCC
Q psy6213 133 ------TKI-FHS-NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF---YQFTAH---------------SGP 186 (330)
Q Consensus 133 ------~~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~---~~~~~~---------------~~~ 186 (330)
... +.. .......++|+|+++.++++-...+.|+.++.......+ ..+.+. -..
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 112 221 234568999999998656666677889987654311111 111111 112
Q ss_pred eE-EEEEc-------CCCCEEEEEecCCcEEEEeCCCCccccceec------------------------cccceEEEEE
Q psy6213 187 IF-ACDWH-------PEHAWLATASRDKTIKVWDLSIKPSLEYSIN------------------------TIASVSRIKW 234 (330)
Q Consensus 187 i~-~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------------~~~~v~~~~~ 234 (330)
.. .+... +++.++++-...+.|+.++. ++ .+..... .-.....+++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 34 44554 45677777677888999984 33 2211111 1134778999
Q ss_pred cCC-CCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 235 RPQ-RKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 235 ~~~-~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
+++ +. |+++-. .+..|+.+++.....
T Consensus 452 d~~~g~-lyVaD~--~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 452 DDVKEM-FYVHDQ--VGHTIRTISMEQEEN 478 (496)
T ss_dssp ETTTTE-EEEEET--TTTEEEEEEECCCC-
T ss_pred ECCCCE-EEEEeC--CCCEEEEEECCCCcc
Confidence 997 55 566655 588999999876543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-05 Score=71.31 Aligned_cols=260 Identities=10% Similarity=0.006 Sum_probs=143.5
Q ss_pred EEEee-CCC----eeecC-CCeEEEEEcCCcceeeeeceeeccccccccceee-eeecccCCcEEEEEc------CCCcE
Q psy6213 10 HGLKA-DNG----LAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCND-VAWSCIEENHIATGA------TNGAV 76 (330)
Q Consensus 10 ~~~s~-~~~----~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~------~dg~i 76 (330)
++++| +++ .++.. |+.+.-+|.++|+..-......... ...+.+ .... + ..+++++ .+|.|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~---~~~~~ssP~v~--~-g~V~vg~~g~e~g~~g~v 184 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKV---GSTLTIAPYVV--K-DKVIIGSSGAELGVRGYL 184 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGG---TCBCCSCCEEE--T-TEEEECCBCGGGTCCCEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCc---cceeecCCEEE--C-CEEEEEecccccCCCCeE
Confidence 45543 444 54555 9999999999998765544332110 001111 1111 3 3455554 37899
Q ss_pred EEEECCCCCCCceeEEecccccc-------------------------------------e-eEEEEEecCCCEEEEEec
Q psy6213 77 VVWNLGQISRSKQERVFNDHKRT-------------------------------------V-NKVSFHYVESNWLISGSQ 118 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~-------------------------------------i-~~i~~~~~~~~~l~~~~~ 118 (330)
+-+|..+ ++.+-.+...... + ..+++.+ ...+++.+..
T Consensus 185 ~A~D~~T---G~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~g 260 (599)
T 1w6s_A 185 TAYDVKT---GEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTG 260 (599)
T ss_dssp EEEETTT---CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECC
T ss_pred EEEECCC---CcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeCC
Confidence 9999988 4444333221100 0 1345665 5667776665
Q ss_pred C----------------CcEEEEEeecCceeeeeecCC----------CCeEEEEEc-CCCC--cEEEEEecCCcEEEEe
Q psy6213 119 D----------------GTMRLFDIRCQESTKIFHSNT----------ESVRDVEFN-PHSP--YAFASVSENGTIQQWD 169 (330)
Q Consensus 119 d----------------~~i~i~d~~~~~~~~~~~~~~----------~~v~~~~~~-~~~~--~~~~~~~~dg~i~i~d 169 (330)
+ +.|..+|.++++.+-.++... .++. +... .+++ .+++.++.+|.++++|
T Consensus 261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD 339 (599)
T 1w6s_A 261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLD 339 (599)
T ss_dssp CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEE
Confidence 4 379999999999887766422 1221 2222 4552 3677788999999999
Q ss_pred cCCCccceeeeccC-------------CCCe--------------------------EEEEEcCCCCEEEEEe-------
Q psy6213 170 VRRPEKCFYQFTAH-------------SGPI--------------------------FACDWHPEHAWLATAS------- 203 (330)
Q Consensus 170 ~~~~~~~~~~~~~~-------------~~~i--------------------------~~~~~~~~~~~l~~~~------- 203 (330)
.+++ +.+...... ..++ ..++++|+..++++..
T Consensus 340 ~~tG-~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (599)
T 1w6s_A 340 RTDG-ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW 418 (599)
T ss_dssp TTTC-CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred CCCC-CEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence 9884 333322110 0011 2466777766655432
Q ss_pred --------------------------------cCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCC
Q psy6213 204 --------------------------------RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDS 251 (330)
Q Consensus 204 --------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 251 (330)
.+|.+.-||+.+++...... ...+...-.....+..+++ ++ .|+
T Consensus 419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagg~vf~-gt--~dg 494 (599)
T 1w6s_A 419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFY-GT--LDG 494 (599)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEE-EC--TTS
T ss_pred ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEec-CCCCccCcceEecCCEEEE-EC--CCC
Confidence 34678888888875433322 1111111111223444444 44 599
Q ss_pred eEEEEEccCCCccceEeecCCC-CeEEEEEecCCCE
Q psy6213 252 SVNVWDIRRPYIPLASFTEHKD-VVSGLAWRGDPQL 286 (330)
Q Consensus 252 ~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 286 (330)
.++.||.++++. +-.++.... ...-+.+..+|+.
T Consensus 495 ~l~A~D~~tG~~-lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 495 YLKARDSDTGDL-LWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp EEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEE
T ss_pred eEEEEECCCCCE-EEEeeCCCCcEeccEEEEeCCEE
Confidence 999999999987 544443222 1122455567763
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.1e-05 Score=61.39 Aligned_cols=274 Identities=7% Similarity=0.004 Sum_probs=145.4
Q ss_pred ccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCC
Q psy6213 5 SPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 83 (330)
..+.++.|.+++..+++| .|.| +...+.++--........ .....+.++.|.+ +..+++ +..|.|.. ..+.
T Consensus 36 ~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~---~~~~~~~~i~~~~--~~~~~~-g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLD---HSDYRFNSVSFQG--NEGWIV-GEPPIMLH-TTDG 107 (327)
T ss_dssp SCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCS---CCCCEEEEEEEET--TEEEEE-EETTEEEE-ESST
T ss_pred CcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCC---CCCccEEEEEecC--CeEEEE-ECCCeEEE-ECCC
Confidence 468899998777776677 7765 333444432222211110 0122357888875 444444 45564433 2332
Q ss_pred CCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeee-eecCCCCeEEEEEcCCCCcEEEEEecC
Q psy6213 84 ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI-FHSNTESVRDVEFNPHSPYAFASVSEN 162 (330)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d 162 (330)
....+.......+...+..+.+.+ ++..++++ .++.|..- .+.++.-.. .......+..+++.|++. +++.+ .+
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g-~~ 182 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVS-SR 182 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEE-TT
T ss_pred CCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEE-CC
Confidence 222222221112334567787775 55555554 46654321 122332222 223445788999999876 45544 45
Q ss_pred CcEEE-Eec-CCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc---ccce-eccccceEEEEEcC
Q psy6213 163 GTIQQ-WDV-RRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS---LEYS-INTIASVSRIKWRP 236 (330)
Q Consensus 163 g~i~i-~d~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~v~~~~~~~ 236 (330)
|.+.. .|- ...-+.+ -......+..+.+.+++..+ ..+.+|.+++.+...++. .... ......+..+.+.+
T Consensus 183 G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 183 GSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp SSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred CcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 55444 342 1111111 12345678899999988755 455678887764222211 1111 11224588899998
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCccceEee---cCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT---EHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
++.. ++.+. ++.+ .+....++. -..+. .....+.++.|.+++ .+++++.+|.|..+..
T Consensus 260 ~~~~-~~~g~---~g~i-~~S~DgG~t-W~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 260 PNEV-WLAGG---AGAL-LCSQDGGQT-WQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp SSCE-EEEES---TTCE-EEESSTTSS-CEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CCEE-EEEeC---CCeE-EEeCCCCcc-cEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 8774 66554 7766 344444433 33332 123568889997655 4667778998776643
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=8.6e-05 Score=65.96 Aligned_cols=225 Identities=5% Similarity=-0.035 Sum_probs=144.9
Q ss_pred cEEEEEcCCCcEEEEECCCCCCCceeEEec-ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCe
Q psy6213 65 NHIATGATNGAVVVWNLGQISRSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESV 143 (330)
Q Consensus 65 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v 143 (330)
.+|+.+ ..+.|+..+++.. .....+. ..-.....++|.+.++.++++-..++.|+.++++.......+.......
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~---~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P 82 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETN---NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYP 82 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCT---TCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred cEEEEE-eCCcEEEEECCCC---CcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCc
Confidence 344444 4567999999762 2222222 1234678999998556666666677899999887554443343333457
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe--cCCcEEEEeCCCCccccc
Q psy6213 144 RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS--RDKTIKVWDLSIKPSLEY 221 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~ 221 (330)
..+++.+.+..++++-...+.|.+.++.... ........-.....+++.|....|+... ..+.|...++..... ..
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~ 160 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TT 160 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EE
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EE
Confidence 7899988777677776777889999987532 2222223445678999999655555554 256788888766533 22
Q ss_pred eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 222 SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 222 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
..........+++++++..|+.+-. ..+.|..+|+..... ..+........++++.. +.+.++-...+.|...+
T Consensus 161 l~~~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 161 LVPNVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EECCCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 2334567889999998887788776 689999999976543 33333334566888765 44444444466776665
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-05 Score=68.58 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=93.1
Q ss_pred CcEEEEEeecCceeeeeec--CC--------CCeEEEEEc-CCCC--cEEEEEecCCcEEEEecCCCccceeeeccCC--
Q psy6213 120 GTMRLFDIRCQESTKIFHS--NT--------ESVRDVEFN-PHSP--YAFASVSENGTIQQWDVRRPEKCFYQFTAHS-- 184 (330)
Q Consensus 120 ~~i~i~d~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~--~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~-- 184 (330)
+.|..+|.++++.+-.++. |. .++. +... .+++ .+++.++.+|.++++|.+++ +.+-.+....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG-~~lw~~~~~~~~ 368 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNG-KLQNAFPFVDNI 368 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTC-CEEEEEESSSCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCC-CEecccccccCc
Confidence 5899999999998877753 21 1221 2221 3553 36788999999999999874 3332221110
Q ss_pred -----------CC--------------------------------eEEEEEcCCCCEEEEEe------------------
Q psy6213 185 -----------GP--------------------------------IFACDWHPEHAWLATAS------------------ 203 (330)
Q Consensus 185 -----------~~--------------------------------i~~~~~~~~~~~l~~~~------------------ 203 (330)
.+ -..++++|+..++++..
T Consensus 369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence 00 01356677655555433
Q ss_pred ---------------cCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEe
Q psy6213 204 ---------------RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASF 268 (330)
Q Consensus 204 ---------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~ 268 (330)
.+|.|.-||+.+++....... ..+...-.....+..+++ ++ .|+.++.||.++++. +-.+
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagglvf~-g~--~dg~l~A~D~~tG~~-lW~~ 523 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE-HLPLWAGVLATAGNLVFT-GT--GDGYFKAFDAKSGKE-LWKF 523 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE-SSCCCSCCEEETTTEEEE-EC--TTSEEEEEETTTCCE-EEEE
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecC-CCCCcccceEeCCCEEEE-EC--CCCcEEEEECCCCCE-EEEe
Confidence 257899999998855433222 222211111123444444 55 699999999999987 5555
Q ss_pred ecCCCCe-EEEEEecCCCEEEE
Q psy6213 269 TEHKDVV-SGLAWRGDPQLFIA 289 (330)
Q Consensus 269 ~~~~~~v-~~~~~~~~~~~l~s 289 (330)
+...... .-+.|..+|+..++
T Consensus 524 ~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 524 QTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp ECSSCCCSCCEEEEETTEEEEE
T ss_pred cCCCCcccCceEEEECCEEEEE
Confidence 4433211 22566677764433
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.7e-07 Score=82.22 Aligned_cols=220 Identities=13% Similarity=0.010 Sum_probs=128.1
Q ss_pred CCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec----CceeeeeecCCCCeEEEEE
Q psy6213 73 NGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC----QESTKIFHSNTESVRDVEF 148 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~v~~~~~ 148 (330)
.+.|+..++.. ......+. ....+..++|.+.++.++++-...+.|+.+++.. ......+.........+++
T Consensus 385 ~~~I~~id~~~---~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 385 RHEVRKMTLDR---SEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp TTC-CEECTTS---CCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred ccceEEEeCCC---Ccceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence 35677777765 22222222 2345678899974444444445567899999875 2222222222234567888
Q ss_pred cCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec-C-CcEEEEeCCCCccccceeccc
Q psy6213 149 NPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR-D-KTIKVWDLSIKPSLEYSINTI 226 (330)
Q Consensus 149 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~ 226 (330)
.+.+..++++-...+.|.++++.. ......+.........++++|.+.+|+.+.. . +.|..+++.............
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg-~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l 539 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI 539 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSS-CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSC
T ss_pred EeeCCcEEEEeccCCeEEEEecCC-CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCC
Confidence 866665666656678899999875 2222222222345678999996655554442 2 678888776542222222223
Q ss_pred cceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee--cCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 227 ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT--EHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 227 ~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.....|+|+|++..|+.+-. ..+.|..+++..... ..... .......+|++..+ .++++....+.|..+..
T Consensus 540 ~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp SSCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred CCccEEEEeccCCEEEEEec--CCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 55778999998877777776 688999999875432 22221 11123455666554 45555556677877754
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-06 Score=76.91 Aligned_cols=225 Identities=7% Similarity=0.004 Sum_probs=121.8
Q ss_pred eEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc-CC-----CcEEE
Q psy6213 8 HKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA-TN-----GAVVV 78 (330)
Q Consensus 8 ~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~i 78 (330)
.++++.++|++ ++.| ++.+.+||..+++.......+.... -.+++..+ ++++++.|+ .+ ..+.+
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~------~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~ 318 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG------YQSSATMS-DGRVFTIGGSWSGGVFEKNGEV 318 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS------SCEEEECT-TSCEEEECCCCCSSSCCCCEEE
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccc------ccceEEec-CCeEEEEeCcccCCcccccceE
Confidence 34677889999 5555 6689999998876554433222111 13445556 788888888 34 46899
Q ss_pred EECCCCCCCceeEEecc-----cccceeEEEEEecCCCEEEEEecCC---------cEEEEEeecCceeeeeecCC----
Q psy6213 79 WNLGQISRSKQERVFND-----HKRTVNKVSFHYVESNWLISGSQDG---------TMRLFDIRCQESTKIFHSNT---- 140 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~~l~~~~~d~---------~i~i~d~~~~~~~~~~~~~~---- 140 (330)
||..+ .+- ..+.. ....-....+.. ++..++.|+.+| .+..||..+...........
T Consensus 319 yd~~t---~~W-~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~ 393 (656)
T 1k3i_A 319 YSPSS---KTW-TSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 393 (656)
T ss_dssp EETTT---TEE-EEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred eCCCC---Ccc-eeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc
Confidence 99876 221 11110 000000001111 445555555443 56788877665332222111
Q ss_pred -----CCeEEEEEcCCCCcEEEEEecCC-----------cEEEEecCCCccceeee--ccC-CCCeEEEEEcCCCCEEEE
Q psy6213 141 -----ESVRDVEFNPHSPYAFASVSENG-----------TIQQWDVRRPEKCFYQF--TAH-SGPIFACDWHPEHAWLAT 201 (330)
Q Consensus 141 -----~~v~~~~~~~~~~~~~~~~~~dg-----------~i~i~d~~~~~~~~~~~--~~~-~~~i~~~~~~~~~~~l~~ 201 (330)
..-.++.|...+..+++.|+.++ .+.+||..+..- .... ... ...-.+....|++++++.
T Consensus 394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~mp~~R~~~~~~~l~~g~i~v~ 472 (656)
T 1k3i_A 394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN-TVFASNGLYFARTFHTSVVLPDGSTFIT 472 (656)
T ss_dssp ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE-EEECTTCCSSCCBSCEEEECTTSCEEEE
T ss_pred cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe-eEEccCCCCCCcccCCeEECCCCCEEEE
Confidence 12244455443444788887543 577888776321 1111 111 122335566789999999
Q ss_pred EecC-----------CcEEEEeCCCCcccc--ceeccccceEEEEEcCCCCeEEEEe
Q psy6213 202 ASRD-----------KTIKVWDLSIKPSLE--YSINTIASVSRIKWRPQRKFHLASC 245 (330)
Q Consensus 202 ~~~d-----------g~i~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~ 245 (330)
|+.+ ..+.+||..+.+-.. .............+.|+++.+++++
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred CCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCC
Confidence 9864 468999987653111 1111122334556779999655555
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.5e-05 Score=67.92 Aligned_cols=277 Identities=12% Similarity=0.016 Sum_probs=150.9
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeecccccc--ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeE
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINL--NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQER 91 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 91 (330)
++..++++ ++.|.-+|.++|+.+-.+.......... ......++. .+..++.++.++.|.-+|..+ ++.+-
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~---~~~~v~~~t~dg~l~AlD~~T---G~~~W 141 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI---YGDKVFFGTLDASVVALNKNT---GKVVW 141 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE---ETTEEEEEETTTEEEEEESSS---CCEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE---ECCEEEEEeCCCEEEEEECCC---CCEEe
Confidence 45553333 4558889999988765554432211000 000011222 356777888899999999988 55444
Q ss_pred Eecccc--c--cee-EEEEEec--CCC-EEEEEe------cCCcEEEEEeecCceeeeeecCCCC---------------
Q psy6213 92 VFNDHK--R--TVN-KVSFHYV--ESN-WLISGS------QDGTMRLFDIRCQESTKIFHSNTES--------------- 142 (330)
Q Consensus 92 ~~~~~~--~--~i~-~i~~~~~--~~~-~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~--------------- 142 (330)
...... . .+. .-..... +++ .+++++ .++.|+.+|.++++.+-........
T Consensus 142 ~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~ 221 (582)
T 1flg_A 142 KKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDV 221 (582)
T ss_dssp EEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCT
T ss_pred eecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccc
Confidence 332211 0 111 1112211 122 566654 3789999999999877654321100
Q ss_pred --------------------------eEEEEEcCCCCcEEEEEec--------------------C----CcEEEEecCC
Q psy6213 143 --------------------------VRDVEFNPHSPYAFASVSE--------------------N----GTIQQWDVRR 172 (330)
Q Consensus 143 --------------------------v~~~~~~~~~~~~~~~~~~--------------------d----g~i~i~d~~~ 172 (330)
-..+++.|+.. +++.+.. | +.|..+|.++
T Consensus 222 g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g-~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T 300 (582)
T 1flg_A 222 KAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETN-TIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS 300 (582)
T ss_dssp TCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTT-EEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred ccccCCCccccccccccccccCCccccCCceEcCCCC-EEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence 01345666666 4555542 2 5799999998
Q ss_pred Cccceeeec--cCCC-------CeEEEEEc-CCCC---EEEEEecCCcEEEEeCCCCccccceeccc-------------
Q psy6213 173 PEKCFYQFT--AHSG-------PIFACDWH-PEHA---WLATASRDKTIKVWDLSIKPSLEYSINTI------------- 226 (330)
Q Consensus 173 ~~~~~~~~~--~~~~-------~i~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------- 226 (330)
+ +..-.++ .|.. ...-+... .+|+ .++.++.+|.++++|..+++.+.......
T Consensus 301 G-~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g 379 (582)
T 1flg_A 301 G-EVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG 379 (582)
T ss_dssp C-CEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC
T ss_pred C-CEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCC
Confidence 4 4443332 2221 11112221 4663 78889999999999998885432211100
Q ss_pred cc--------------------------------eEEEEEcCCCCeEEEEee----------------------------
Q psy6213 227 AS--------------------------------VSRIKWRPQRKFHLASCS---------------------------- 246 (330)
Q Consensus 227 ~~--------------------------------v~~~~~~~~~~~l~~~~~---------------------------- 246 (330)
.+ -..++++|+...+++...
T Consensus 380 ~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p 459 (582)
T 1flg_A 380 RPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKR 459 (582)
T ss_dssp CEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred CEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecC
Confidence 00 013466776554444321
Q ss_pred --cccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 247 --LVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 247 --~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
...+|.|..||+.+++. +-..... .++..-.....+.+++.++.||.++.|+.
T Consensus 460 ~~~~~~G~l~A~D~~tG~~-~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 460 MYDDHVGSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp SCSSCSEEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred CCCCCcceEEEEECCCCCE-EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEEC
Confidence 00258899999999875 3333222 22222222224667888999999999974
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.2e-05 Score=66.79 Aligned_cols=227 Identities=9% Similarity=0.014 Sum_probs=128.5
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeE
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNK 102 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~ 102 (330)
.+.|+..+++............ +. ....++|++.++.++.+-...+.|..++++... .....+...-.....
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~-----~~-~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~--~~~~v~~~~~~~P~G 88 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGG-----LE-DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--SVQNVVVSGLLSPDG 88 (619)
T ss_dssp SSBEEEECCC---------CBC-----CS-CEEEEEEETTTTEEEEEETTTTEEEEEEC-------CEEEECSSCSCEEE
T ss_pred cccEEEEeCCCCcceEEEEEcC-----CC-ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC--ceEEEEeCCCCCcCe
Confidence 6778888877542111111111 11 137899998344444454556788888886521 112223333356788
Q ss_pred EEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe-cCCcEEEEecCCCccceeeec
Q psy6213 103 VSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS-ENGTIQQWDVRRPEKCFYQFT 181 (330)
Q Consensus 103 i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~~~ 181 (330)
+++.+.+++++++-...+.|.+.+++...........-.....+++.|.+.+++++-- ..+.|...++.. ........
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~ 167 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIIN 167 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEEC
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEe
Confidence 9998755666666667789999998754333333234456778999998775555542 245677777663 22222222
Q ss_pred cCCCCeEEEEEcCCCCEEEEE-ecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccC
Q psy6213 182 AHSGPIFACDWHPEHAWLATA-SRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 182 ~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
..-...+.+++++++..|..+ ...+.|..+|+..................+++..+ .++.+-. ..+.|...|..+
T Consensus 168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~--~~~~V~~~d~~t 243 (619)
T 3s94_A 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW--STHSILACNKYT 243 (619)
T ss_dssp SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT--TTCSEEEEESSS
T ss_pred CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC--CCCEEEEEECCC
Confidence 234567899999876555544 45678999998765332222112233456677655 4566655 578888888766
Q ss_pred CC
Q psy6213 261 PY 262 (330)
Q Consensus 261 ~~ 262 (330)
++
T Consensus 244 g~ 245 (619)
T 3s94_A 244 GE 245 (619)
T ss_dssp CC
T ss_pred Cc
Confidence 54
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.57 E-value=4e-05 Score=63.13 Aligned_cols=232 Identities=9% Similarity=0.071 Sum_probs=120.6
Q ss_pred cceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccC---CcEEEEEcC-C-----Cc
Q psy6213 6 PVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE---ENHIATGAT-N-----GA 75 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~-d-----g~ 75 (330)
.-..++|.|||+++++. +|.|.+++ +++........ ....-......++|+| + +..|+++.. . +.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~--v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELS--VYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECC--CCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecce--EeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccE
Confidence 45789999999987777 99999998 44322211111 0000112358899999 5 444444432 2 56
Q ss_pred EEEEECCCCCC--Cce-eEEec---ccccceeEEEEEecCCCEEEEEecC-------------CcEEEEEeecC------
Q psy6213 76 VVVWNLGQISR--SKQ-ERVFN---DHKRTVNKVSFHYVESNWLISGSQD-------------GTMRLFDIRCQ------ 130 (330)
Q Consensus 76 i~iw~~~~~~~--~~~-~~~~~---~~~~~i~~i~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~------ 130 (330)
|..++...... .+. ...+. ........++|.| ++.+.++.+.. |.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 77787764110 111 11122 1112346899998 77766664321 45555555420
Q ss_pred ------ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCc--------EEEEecCCC---------------ccceeeec
Q psy6213 131 ------ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT--------IQQWDVRRP---------------EKCFYQFT 181 (330)
Q Consensus 131 ------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~--------i~i~d~~~~---------------~~~~~~~~ 181 (330)
.....+...-.....++|+|+...++++-..... |.+...... ..+...+.
T Consensus 186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 0111222122335678999943334544332222 333321110 01222222
Q ss_pred cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc------ccceeccccceEEEEEcCCCCeEEEEe
Q psy6213 182 AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS------LEYSINTIASVSRIKWRPQRKFHLASC 245 (330)
Q Consensus 182 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~ 245 (330)
+......++| .+|.++++.-..+.|...++..... ..........+..+++.|||..+++..
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2234567777 4677776666677788887764421 111222345788999999997544443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=79.13 Aligned_cols=202 Identities=10% Similarity=0.027 Sum_probs=117.5
Q ss_pred cceEEEEeeCCCe-eecC--CCeEEEEEcCCc----ceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 6 PVHKHGLKADNGL-AQPS--RNVFKIFLIKDT----EFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 6 ~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
.+.+++|.+.+.. ..+. .+.|+.+++... ........ .+ .....+++.+..++++++-...+.|.+
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~------~~-~~P~glavD~~~g~LY~tD~~~~~I~v 479 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------DI-QAPDGLAVDWIHSNIYWTDSVLGTVSV 479 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS------CC---CCCEECCCSSSBCEECCTTTSCEEE
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC------CC-CCcceEEEEeeCCcEEEEeccCCeEEE
Confidence 4567888886655 4443 778888887751 11111100 01 113567777535566666566788999
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC-CcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD-GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
+++.. ......+.........+++.|.++.++++-... +.|..+++............-.....|+|+|++.++++
T Consensus 480 ~d~dg---~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 480 ADTKG---VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW 556 (699)
T ss_dssp EBSSS---CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEE
T ss_pred EecCC---CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEE
Confidence 99875 222222222234567889988445555444333 68888887643222222222345678999998877777
Q ss_pred EEecCCcEEEEecCCCccceeeec--cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFT--AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL 219 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 219 (330)
+-...+.|..+|+..... ...+. ........|++..+ .++++....+.|..+|..+++..
T Consensus 557 aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp EETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred EecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCce
Confidence 777778899999874221 11111 11233456666544 45556666788999998766443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.55 E-value=0.0001 Score=59.52 Aligned_cols=196 Identities=15% Similarity=0.232 Sum_probs=123.4
Q ss_pred CcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEec---CCC---EEEEEe-c--CCcEEEEEee-cCcee
Q psy6213 64 ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV---ESN---WLISGS-Q--DGTMRLFDIR-CQEST 133 (330)
Q Consensus 64 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~---~~~---~l~~~~-~--d~~i~i~d~~-~~~~~ 133 (330)
..+++.....+-+.+||+ + ++.+..+.. +.++.+..-|. +++ ++++.. . +++|.+|++. ....+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~---G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-D---GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp GCEEEEEETTTEEEEEET-T---SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred ccEEEEEcCCCCEEEEcC-C---CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 445666667788999999 4 577776653 56777777651 122 233333 3 5789999874 12234
Q ss_pred eeeec------CC-CCeEEEEE--cCC-CCcEEEEEecCCcEEEEecCCC------ccceeeeccCCCCeEEEEEcCCCC
Q psy6213 134 KIFHS------NT-ESVRDVEF--NPH-SPYAFASVSENGTIQQWDVRRP------EKCFYQFTAHSGPIFACDWHPEHA 197 (330)
Q Consensus 134 ~~~~~------~~-~~v~~~~~--~~~-~~~~~~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~i~~~~~~~~~~ 197 (330)
..+.. .. ..+..+++ +|. +...+++...+|.+..|++... .+.++++.. .+.+-.+...+...
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g 192 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYG 192 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCC
Confidence 33311 11 45666777 664 4434777788899999988431 234555553 46788999999888
Q ss_pred EEEEEecCCcEEEEeCCCCc----ccccee---ccccceEEEEE--cCCCC-eEEEEeecccCCeEEEEEccCCCccceE
Q psy6213 198 WLATASRDKTIKVWDLSIKP----SLEYSI---NTIASVSRIKW--RPQRK-FHLASCSLVVDSSVNVWDIRRPYIPLAS 267 (330)
Q Consensus 198 ~l~~~~~dg~i~i~d~~~~~----~~~~~~---~~~~~v~~~~~--~~~~~-~l~~~~~~~~~~~i~i~d~~~~~~~~~~ 267 (330)
.|+.+-++.-|..||.+... .+.... .....+..|++ .++++ +|++++. .+++..+||.......+..
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ--G~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ--GNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG--GGTEEEEEESSTTCCEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC--CCCEEEEEECCCCCcEEEE
Confidence 99999998777777754221 122121 12346788887 55666 7888886 6899999999743333445
Q ss_pred e
Q psy6213 268 F 268 (330)
Q Consensus 268 ~ 268 (330)
+
T Consensus 271 f 271 (355)
T 3amr_A 271 F 271 (355)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.53 E-value=4e-05 Score=65.31 Aligned_cols=201 Identities=11% Similarity=0.119 Sum_probs=119.6
Q ss_pred ceeEEEEEec-CCCEEEEEecCCcEEEEEeecCceeeeeecC---CCCeEEEEE-------cCCCCcEEEEEecCCc---
Q psy6213 99 TVNKVSFHYV-ESNWLISGSQDGTMRLFDIRCQESTKIFHSN---TESVRDVEF-------NPHSPYAFASVSENGT--- 164 (330)
Q Consensus 99 ~i~~i~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~~~~~~~~dg~--- 164 (330)
....|+|.|. +++++++-...+.|++.|++++......... ......++| ++++.+++++-..++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3568899973 4555555555567889998876655444322 235889999 9999865555444322
Q ss_pred ---EEEEecCCCccce-----eeeccCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCC-------CCcc----------
Q psy6213 165 ---IQQWDVRRPEKCF-----YQFTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLS-------IKPS---------- 218 (330)
Q Consensus 165 ---i~i~d~~~~~~~~-----~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~-------~~~~---------- 218 (330)
|.+++....+... ..+.. ......++++| ++.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 6677643311211 12222 22446788999 45556666678889999987 4432
Q ss_pred ---ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccc---eEeecC---C------------CCeE-
Q psy6213 219 ---LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPL---ASFTEH---K------------DVVS- 276 (330)
Q Consensus 219 ---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~---~~~~~~---~------------~~v~- 276 (330)
.............++|+|+|++++++-. ....|+.++.......+ ..+.+. . ....
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeC--CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 0111222345689999999997666665 58899997765322101 122211 0 1234
Q ss_pred EEEEe-------cCCCEEEEeecCCeEeeeecc
Q psy6213 277 GLAWR-------GDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 277 ~~~~~-------~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.++.. +++.+.++=....+|+.+...
T Consensus 377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~ 409 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE 409 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT
T ss_pred EEEEccccccccCCCeEEEEECCCCEEEEEeCC
Confidence 45554 456666666667788887643
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=7.7e-05 Score=66.17 Aligned_cols=227 Identities=9% Similarity=-0.030 Sum_probs=130.2
Q ss_pred EEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-eeeeecCCCCeE
Q psy6213 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES-TKIFHSNTESVR 144 (330)
Q Consensus 66 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~ 144 (330)
+|+-+. ...|+..++.... .........-.....++|++.++.++++-...+.|..++++.... ...+...-....
T Consensus 11 ~~~~~~-~~~I~~i~~~~~~--~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~ 87 (619)
T 3s94_A 11 LLLYAN-RRDLRLVDATNGK--ENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 87 (619)
T ss_dssp CEEEEC-SSBEEEECCC-----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE
T ss_pred eEEEec-cccEEEEeCCCCc--ceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC
Confidence 344333 4678888887521 111222223355788999984455555555567899998875532 223333335688
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec--CCcEEEEeCCCCccccce
Q psy6213 145 DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR--DKTIKVWDLSIKPSLEYS 222 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~ 222 (330)
.+++.+.+..++++-...+.|.+.++... ...............|++.|.+..|+.... .+.|...++.........
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~ 166 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 166 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred eEEEEecCCEEEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE
Confidence 99999977767777777889999998752 222222234456789999997555555543 456777777654332222
Q ss_pred eccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 223 INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 223 ~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
.........+++++++..|+.+-. ..+.|..+|+..... .....+......++++.++ .+..+-...+.|...+
T Consensus 167 ~~~~~~P~Glald~~~~~LY~aD~--~~~~I~~~~~dG~~~-~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d 240 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACN 240 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEET--TTCCEEEESSSCCEE-C---------CCCEEESSS-EEEEECTTTCSEEEEE
T ss_pred eCCCCCCcEEEEEccCCEEEEEeC--CCCeEEEecCCCCcc-EEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEE
Confidence 234457889999998877777766 688999999875432 2222211222346666554 3333333445555544
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00011 Score=58.81 Aligned_cols=197 Identities=9% Similarity=0.127 Sum_probs=122.1
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeE-Eecc----c--ccceeEEEE---EecCCCEEEEEec------
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQER-VFND----H--KRTVNKVSF---HYVESNWLISGSQ------ 118 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~----~--~~~i~~i~~---~~~~~~~l~~~~~------ 118 (330)
.+++|.+.++.++++.-..+.|..|+... ..... .+.. . ...+..+.| .| ++.++++...
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~---~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKT---QSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF 91 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTT---CCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCC---CeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence 68899873444444444789999999874 22222 2222 1 124578999 57 5677765432
Q ss_pred -------CCcEEEEEee---cCceeeeeec-------------CCCCeEEEEEcCCCCcEEEEEecC-CcEEEEecCCCc
Q psy6213 119 -------DGTMRLFDIR---CQESTKIFHS-------------NTESVRDVEFNPHSPYAFASVSEN-GTIQQWDVRRPE 174 (330)
Q Consensus 119 -------d~~i~i~d~~---~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~d-g~i~i~d~~~~~ 174 (330)
+..|..||+. +++.+..... .......++..++|+ ..++++.. +.|...+...
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG-- 168 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADG-- 168 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTS--
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCC--
Confidence 5779999998 7776654431 112478999999998 68888888 8877777663
Q ss_pred cceeeec------cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee---c---cccceEEE-EEcCCCCeE
Q psy6213 175 KCFYQFT------AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI---N---TIASVSRI-KWRPQRKFH 241 (330)
Q Consensus 175 ~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~---~~~~v~~~-~~~~~~~~l 241 (330)
+....+. ......+.|+++|+|+.|++....|.+..+|+.......... + .......+ ..-.+|+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 2222111 112246799999999998888779999999998542200111 1 11223443 334567765
Q ss_pred EEEeecccCCeEEEEEccC
Q psy6213 242 LASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 242 ~~~~~~~~~~~i~i~d~~~ 260 (330)
+++.. ..+.+.+.+-..
T Consensus 249 lV~~~--~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGAR--APYAISFRSWDN 265 (334)
T ss_dssp EEEEE--TTEEEEEECSST
T ss_pred EEEcC--CCCEEEEECCCC
Confidence 66665 455555555443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.38 E-value=8.5e-05 Score=59.46 Aligned_cols=202 Identities=8% Similarity=0.120 Sum_probs=121.3
Q ss_pred cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeee-eec----CC--CCeEEEEE---cCCCCcEEEEEec--
Q psy6213 94 NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI-FHS----NT--ESVRDVEF---NPHSPYAFASVSE-- 161 (330)
Q Consensus 94 ~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~~~~~~~~-- 161 (330)
.....--.++.|.+.++.++++.-..++|..||...+..... +.. .. ..+..+.| .|++. ++++...
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~~~~ 87 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMKNAK 87 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEEETT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc-EEEEEcccc
Confidence 334445668899874444444544789999999875543322 221 11 13578999 68865 5664432
Q ss_pred -----------CCcEEEEecC---CCccceeeec--c-----------CCCCeEEEEEcCCCCEEEEEecC-CcEEEEeC
Q psy6213 162 -----------NGTIQQWDVR---RPEKCFYQFT--A-----------HSGPIFACDWHPEHAWLATASRD-KTIKVWDL 213 (330)
Q Consensus 162 -----------dg~i~i~d~~---~~~~~~~~~~--~-----------~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~ 213 (330)
+..|..||+. ++. .+.... . .......++..++|+..++++.- +.|...+.
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~-~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSK-PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCC-CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCC-EEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 5779999998 533 222221 1 11347899999999999998888 88877776
Q ss_pred CCCcccccee-----ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee--cC---CCCeEEE-EEec
Q psy6213 214 SIKPSLEYSI-----NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT--EH---KDVVSGL-AWRG 282 (330)
Q Consensus 214 ~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~--~~---~~~v~~~-~~~~ 282 (330)
.......... ......+.++++|+|..|++..+ .+.|..+|+........... +. -.....| .--.
T Consensus 167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~---~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG---PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS---SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC---CCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence 6542221111 11234679999999998777765 89999999985432001111 21 1233443 3333
Q ss_pred CCCE-EEEeecCCeEeeee
Q psy6213 283 DPQL-FIASSRVSIIPRAK 300 (330)
Q Consensus 283 ~~~~-l~s~~~dg~i~iw~ 300 (330)
+|+. |++.+..+.+.+.+
T Consensus 244 ~G~vllV~~~~~~~~~l~S 262 (334)
T 2p9w_A 244 GNESVLVGARAPYAISFRS 262 (334)
T ss_dssp TTEEEEEEEETTEEEEEEC
T ss_pred CCEEEEEEcCCCCEEEEEC
Confidence 7777 45455556555543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00053 Score=56.39 Aligned_cols=232 Identities=7% Similarity=-0.014 Sum_probs=121.0
Q ss_pred cceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccC---CcEEEEEcC----C----
Q psy6213 6 PVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIE---ENHIATGAT----N---- 73 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~----d---- 73 (330)
....|+|.|||+++++. +|.|++++. +++ ........ ...-......++++| + +..|+++.. +
T Consensus 30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v--~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDV--ANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCC--CCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEE
T ss_pred CCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccce--eecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcc
Confidence 45789999999987777 999999973 443 21111110 000112358899999 5 444444332 2
Q ss_pred CcEEEEECCCCC-CC---cee-EEec-ccccceeEEEEEecCCCEEEEEec-------------CCcEEEEEeecCc---
Q psy6213 74 GAVVVWNLGQIS-RS---KQE-RVFN-DHKRTVNKVSFHYVESNWLISGSQ-------------DGTMRLFDIRCQE--- 131 (330)
Q Consensus 74 g~i~iw~~~~~~-~~---~~~-~~~~-~~~~~i~~i~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~--- 131 (330)
+.|..|+..... .. +.+ ..+. ........++|.| ++.++++.+. .|.|.-++....-
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 567777765421 00 111 1122 1112346799998 7777666442 1455555543210
Q ss_pred ----eeeeeecCCCCeEEEEEcC-CCCcEEEEEecCC---cEEEEecCCC---------------ccceeeeccCCCCeE
Q psy6213 132 ----STKIFHSNTESVRDVEFNP-HSPYAFASVSENG---TIQQWDVRRP---------------EKCFYQFTAHSGPIF 188 (330)
Q Consensus 132 ----~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~dg---~i~i~d~~~~---------------~~~~~~~~~~~~~i~ 188 (330)
....+...-.....++|+| ++. ++++-.... .|.+...-.. ..+...+........
T Consensus 184 npf~~~~i~a~G~rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 184 NPFPNSPIWSYGHRNPQGIDWHRASGV-MVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp SSSTTCCEEEECCSCCCEEEECTTTCC-EEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCCCcEEEEccCCcceEEEeCCCCC-EEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 0112222223456799999 554 444432221 2333321110 012222211234577
Q ss_pred EEEEc-------CCCCEEEEEecCCcEEEEeCCCCccc---ccee-ccccceEEEEEcCCCCeEEEE
Q psy6213 189 ACDWH-------PEHAWLATASRDKTIKVWDLSIKPSL---EYSI-NTIASVSRIKWRPQRKFHLAS 244 (330)
Q Consensus 189 ~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~l~~~ 244 (330)
.++|. .+|.++++.-..+.|...++...... .... .....+..+++.|||..+++.
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 88883 46777777767778888888753221 1111 124578899999999743333
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00026 Score=57.87 Aligned_cols=196 Identities=10% Similarity=0.117 Sum_probs=116.4
Q ss_pred cceeEEEEEecCCCEEEEE------------ecCCcEEEEEeecCc-eeee--eec-----CCCCeEEEEEcC--CCC-c
Q psy6213 98 RTVNKVSFHYVESNWLISG------------SQDGTMRLFDIRCQE-STKI--FHS-----NTESVRDVEFNP--HSP-Y 154 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~------------~~d~~i~i~d~~~~~-~~~~--~~~-----~~~~v~~~~~~~--~~~-~ 154 (330)
.....+...| ++..++++ ..+|.|.++|.++.. .... +.+ .......+.+.+ ++. +
T Consensus 50 ~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 50 NGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp SCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 3455666665 44444333 168999999987321 1122 222 123566777766 343 3
Q ss_pred EEEEEec--CCcEEEEecCCCccce---eeeccC-CCCeEEEEEcCCCCEEEEEec-----------------CCcEEEE
Q psy6213 155 AFASVSE--NGTIQQWDVRRPEKCF---YQFTAH-SGPIFACDWHPEHAWLATASR-----------------DKTIKVW 211 (330)
Q Consensus 155 ~~~~~~~--dg~i~i~d~~~~~~~~---~~~~~~-~~~i~~~~~~~~~~~l~~~~~-----------------dg~i~i~ 211 (330)
++++-.. +..+.+|++....... ..+.+. -...+.+.+.++|.+.++... .|.+.-+
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 4555443 4678888776533322 223221 245789999999987776541 2445555
Q ss_pred eCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc--ceEeecCCCCeEEEEEec-CCCEEE
Q psy6213 212 DLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP--LASFTEHKDVVSGLAWRG-DPQLFI 288 (330)
Q Consensus 212 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~ 288 (330)
|. + ........-...+.++|+||++.++++-+ ..+.|..|++...... ...+ ...+..-.++..+ +|++.+
T Consensus 209 d~--~-~~~~~~~~l~~pNGia~spDg~~lYvadt--~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 209 SP--N-DVRVVAEGFDFANGINISPDGKYVYIAEL--LAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp CT--T-CCEEEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEE
T ss_pred EC--C-eEEEeecCCcccCcceECCCCCEEEEEeC--CCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEE
Confidence 54 2 22233334456889999999998888877 6899999999743221 1223 2245678899999 598887
Q ss_pred EeecC-CeEeeee
Q psy6213 289 ASSRV-SIIPRAK 300 (330)
Q Consensus 289 s~~~d-g~i~iw~ 300 (330)
++..+ +.|..|+
T Consensus 283 a~~~~g~~v~~~~ 295 (355)
T 3sre_A 283 GCHPNGMRIFFYD 295 (355)
T ss_dssp EEESCHHHHHSCC
T ss_pred EecCCceEEEEEC
Confidence 77644 3444443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00068 Score=55.16 Aligned_cols=232 Identities=7% Similarity=0.004 Sum_probs=121.3
Q ss_pred ccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCC
Q psy6213 5 SPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 83 (330)
..+.++.|.+ +..+++| .+.|.. ..+.++--....... .+...+..+.+.+ ++..++++. +|.|.. ..+.
T Consensus 80 ~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~----~~~~~~~~i~~~~-~~~~~~~~~-~g~v~~-S~Dg 150 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDP----KLPGSPRLIKALG-NGSAEMITN-VGAIYR-TKDS 150 (327)
T ss_dssp CEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCT----TCSSCEEEEEEEE-TTEEEEEET-TCCEEE-ESST
T ss_pred ccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECcccc----CCCCCeEEEEEEC-CCCEEEEeC-CccEEE-EcCC
Confidence 4678889876 4555567 775433 333343222221110 0111235677665 566666554 554422 1222
Q ss_pred CCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee-ecCCCCeEEEEEcCCCCcEEEEEecC
Q psy6213 84 ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF-HSNTESVRDVEFNPHSPYAFASVSEN 162 (330)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d 162 (330)
....+. ........+..+.+.| ++.+++.+. +|.+..-+-..++.-..+ ......+..+.+.+++. ++.++.+
T Consensus 151 G~tW~~--~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~--~~~~~~~ 224 (327)
T 2xbg_A 151 GKNWQA--LVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR--LWMIVNG 224 (327)
T ss_dssp TSSEEE--EECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC--EEEEETT
T ss_pred CCCCEE--eecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC--EEEEeCC
Confidence 111222 2234456788899987 667666554 555544321112221111 22446788999999886 4455667
Q ss_pred CcEEEEecCCCccceeeec----cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee---ccccceEEEEEc
Q psy6213 163 GTIQQWDVRRPEKCFYQFT----AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI---NTIASVSRIKWR 235 (330)
Q Consensus 163 g~i~i~d~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~ 235 (330)
|.+++.+... +.....+. .....+..+.+.+++..++++. +|.+ .+....++.-.... .....+..+.|.
T Consensus 225 G~~~~s~~D~-G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~ 301 (327)
T 2xbg_A 225 GKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFF 301 (327)
T ss_dssp TEEEEEETTE-EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred ceEEEecCCC-CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence 8887764221 22112111 1223588899998877666554 6766 33444342211111 123567788887
Q ss_pred CCCCeEEEEeecccCCeEEEEEc
Q psy6213 236 PQRKFHLASCSLVVDSSVNVWDI 258 (330)
Q Consensus 236 ~~~~~l~~~~~~~~~~~i~i~d~ 258 (330)
+++. +++.+. +|.|.-++-
T Consensus 302 ~~~~-~~~~G~---~G~i~~~~~ 320 (327)
T 2xbg_A 302 SPDQ-GFILGQ---KGILLRYVT 320 (327)
T ss_dssp ETTE-EEEECS---TTEEEEECC
T ss_pred CCCc-eEEEcC---CceEEEEcC
Confidence 6655 466664 888776653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00094 Score=54.91 Aligned_cols=224 Identities=8% Similarity=0.053 Sum_probs=119.7
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEec---ccccceeEEEEEec---CCCEEEEEecC-----CcEE
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFN---DHKRTVNKVSFHYV---ESNWLISGSQD-----GTMR 123 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~---~~~~l~~~~~d-----~~i~ 123 (330)
..++|.| +++++++ ..+|.|.+++ .. .......+. ........++++|+ ++.+.++-... +.|.
T Consensus 34 ~~ia~~p-dG~l~V~-e~~g~I~~i~-~g--~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 34 WALAFLP-DGGMLIA-ERPGRIRLFR-EG--RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp EEEEECT-TSCEEEE-ETTTEEEEEE-TT--EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred eEEEEcC-CCeEEEE-eCCCeEEEEE-CC--CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 7899999 8875554 5669999998 22 122222221 22356789999983 24444443332 5788
Q ss_pred EEEeecCc-----ee-eeee---cCCCCeEEEEEcCCCCcEEEEEec-------------CCcEEEEecCCCc-------
Q psy6213 124 LFDIRCQE-----ST-KIFH---SNTESVRDVEFNPHSPYAFASVSE-------------NGTIQQWDVRRPE------- 174 (330)
Q Consensus 124 i~d~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~~~~~~~~-------------dg~i~i~d~~~~~------- 174 (330)
.++...+. .+ ..+. ........++|.|+|. ++++.+. .|.|..++....-
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 88876431 11 1122 1112346899999996 5655432 2456666654200
Q ss_pred ----cceeee-ccCCCCeEEEEEcC-CCCEEEEEecCCc--------EEEEeCCCCc-----------------ccccee
Q psy6213 175 ----KCFYQF-TAHSGPIFACDWHP-EHAWLATASRDKT--------IKVWDLSIKP-----------------SLEYSI 223 (330)
Q Consensus 175 ----~~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~i~d~~~~~-----------------~~~~~~ 223 (330)
.....+ .++ .....++|+| ++.++++-...+. |.+.. .+. ......
T Consensus 188 ~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 188 GRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEec
Confidence 001111 122 2357889999 6665555443333 33332 221 011111
Q ss_pred ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc-----ceEeecCCCCeEEEEEecCCCEEEEee
Q psy6213 224 NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP-----LASFTEHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 224 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
........++| .+|.. +++.- ..+.|...++...... ...+......+.++++.|||.+.++..
T Consensus 265 ~~~~ap~G~~~-~~G~l-~v~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDL-YVAGL--RGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTCCCEEEEEE-ETTEE-EEEET--TTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCCcceEE-ECCEE-EEEEC--CCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 22234567777 45654 44443 4778888887644310 112212235789999999998777654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00025 Score=57.30 Aligned_cols=188 Identities=9% Similarity=0.126 Sum_probs=116.4
Q ss_pred CCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCC----CCc--EEEEEe-c--CCcEEEEecCCCccceee
Q psy6213 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPH----SPY--AFASVS-E--NGTIQQWDVRRPEKCFYQ 179 (330)
Q Consensus 109 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~~~~~~-~--dg~i~i~d~~~~~~~~~~ 179 (330)
...+++.....+-+.+||+ +++.+..+.. +.+..+..-|. ++. ++++.. . +++|.+|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3455666667788999999 7888888753 56777766663 211 223333 3 578999977422223443
Q ss_pred ecc------CC-CCeEEEEE--cCC-CC-EEEEEecCCcEEEEeCCC---C---ccccceeccccceEEEEEcCCCCeEE
Q psy6213 180 FTA------HS-GPIFACDW--HPE-HA-WLATASRDKTIKVWDLSI---K---PSLEYSINTIASVSRIKWRPQRKFHL 242 (330)
Q Consensus 180 ~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~---~~~~~~~~~~~~v~~~~~~~~~~~l~ 242 (330)
+.. .. ..+..+++ +|. ++ ++++...+|.+..|++.. + ..+.......+.+..+...+....|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 321 11 55677887 774 43 688888899999999843 2 12334444567888999999888766
Q ss_pred EEeecccCCeEEEEEccCCC----ccceEee-cC-CCCeEEEEEe--cCCC-EEEEee-cCCeEeeeecc
Q psy6213 243 ASCSLVVDSSVNVWDIRRPY----IPLASFT-EH-KDVVSGLAWR--GDPQ-LFIASS-RVSIIPRAKNI 302 (330)
Q Consensus 243 ~~~~~~~~~~i~i~d~~~~~----~~~~~~~-~~-~~~v~~~~~~--~~~~-~l~s~~-~dg~i~iw~~~ 302 (330)
++- ++..|..++.+... ..+.... ++ ...+.+|+.- ++++ +|++++ .+.++.+|+..
T Consensus 196 v~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred Eec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 655 46666666644211 1233321 22 2468888884 4555 455554 67789999764
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=0.001 Score=55.04 Aligned_cols=253 Identities=9% Similarity=0.088 Sum_probs=160.7
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeE
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNK 102 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~ 102 (330)
+..|.|-|+.++......... -.+.-.+| ..+.+|.-. ...+.++|+++ ...++.+.- ...|.-
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~----------AdsAIMnP-~~~iiALra-g~~lQiFnle~---K~klks~~~-~e~Vvf 110 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS----------ADSAIMNP-ASKVIALKA-GKTLQIFNIEM---KSKMKAHTM-TDDVTF 110 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC----------CSEEEECS-SSSCEEEEE-TTEEEEEETTT---TEEEEEEEC-SSCCCE
T ss_pred CCeEEEEECCCCCcceecccc----------cceeeeCC-CCcEEEEec-CCeEEEEchHH---hhhhcceec-CCCceE
Confidence 446677777664433211111 13445677 777777765 67899999998 555555543 345666
Q ss_pred EEEEecCCCEEEEEecCCcEEEEEeec-CceeeeeecC----CCCeEEEEEcCCCCcEEEEEe------cCCcEEEEecC
Q psy6213 103 VSFHYVESNWLISGSQDGTMRLFDIRC-QESTKIFHSN----TESVRDVEFNPHSPYAFASVS------ENGTIQQWDVR 171 (330)
Q Consensus 103 i~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~------~dg~i~i~d~~ 171 (330)
=.|- +.+.|+-.+ +..|+-|++.. ..+.+.+..| ...|..-..+++.++++++|- -.|.+.+|..+
T Consensus 111 WkWi--s~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 111 WKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp EEEE--ETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred EEec--CCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 6776 466677666 45899999974 3455555543 356777788999998777764 34778899988
Q ss_pred CCccceeeeccCCCCeEEEEEcCC---CCEEEEEecC---CcEEEEeCCCCc---cc------cceec---cccceEEEE
Q psy6213 172 RPEKCFYQFTAHSGPIFACDWHPE---HAWLATASRD---KTIKVWDLSIKP---SL------EYSIN---TIASVSRIK 233 (330)
Q Consensus 172 ~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d---g~i~i~d~~~~~---~~------~~~~~---~~~~v~~~~ 233 (330)
. +.-+.+++|...-..+....+ .++++.+... +.++|.++.... .. ....+ ...-..++.
T Consensus 188 r--~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamq 265 (494)
T 1bpo_A 188 R--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 265 (494)
T ss_dssp T--CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEE
T ss_pred c--cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEE
Confidence 5 445667777665544444321 1244444432 789999985431 10 00111 133456777
Q ss_pred EcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 234 WRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 234 ~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
.++.-..++... .-|.+++||++++.. +..-+-...+|...+.+.+..-++.....|.|.--.
T Consensus 266 vs~kygviyviT---K~G~i~lyDleTgt~-i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 266 ISEKHDVVFLIT---KYGYIHLYDLETGTC-IYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (494)
T ss_dssp EETTTTEEEEEE---TTSEEEEEETTTCCE-EEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred ecccCCEEEEEe---cCceEEEEeccccee-eeeecccCCceEEecccCCCCcEEEEccCceEEEEE
Confidence 787777555444 599999999999987 666666667777767666656666677888776543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0018 Score=53.28 Aligned_cols=233 Identities=11% Similarity=0.084 Sum_probs=119.4
Q ss_pred cceEEEEeeCCC-eeecC-CCeEEEEEcCCcceeeeec-eeeccccccccceeeeeecccC---CcEEEEE-cC------
Q psy6213 6 PVHKHGLKADNG-LAQPS-RNVFKIFLIKDTEFVETHN-LRVGKNINLNFSCNDVAWSCIE---ENHIATG-AT------ 72 (330)
Q Consensus 6 ~v~~~~~s~~~~-~~~~g-d~~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~-~~------ 72 (330)
....|+|.|+|+ ++++. .|.|++++.+ +.....+. ... ....-......++++| + +..|+.. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~-v~~~g~~g~~gia~~p-df~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPD-VWAHGQGGLLDVVLAP-DFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCC-CCCSTTCSEEEEEECT-THHHHCEEEEEEEEECSSSC
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcc-cccCCCCCceeEEECC-CCCCCCEEEEEEeCCCCCCC
Confidence 457899999999 77777 9999999854 33221111 110 0001112347899998 4 4444443 22
Q ss_pred -CCcEEEEECCCCC-CCceeE-Eecc------cccceeEEEEEecCCCEEEEEecC-------------CcEEEEEeecC
Q psy6213 73 -NGAVVVWNLGQIS-RSKQER-VFND------HKRTVNKVSFHYVESNWLISGSQD-------------GTMRLFDIRCQ 130 (330)
Q Consensus 73 -dg~i~iw~~~~~~-~~~~~~-~~~~------~~~~i~~i~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~ 130 (330)
...|..++..... ...... .+.. .......+.|.| ++.+.++.+.. |.|.-++....
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 2346666664321 011111 1111 112246799998 77666655432 45666665422
Q ss_pred c------------eeeeeecCCCCeEEEEEcC-CCCcEEEEEecC--CcEEEEecCCCc---------------------
Q psy6213 131 E------------STKIFHSNTESVRDVEFNP-HSPYAFASVSEN--GTIQQWDVRRPE--------------------- 174 (330)
Q Consensus 131 ~------------~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d--g~i~i~d~~~~~--------------------- 174 (330)
- ....+...-.....++|+| ++. +++ +... +.=.|.-+..+.
T Consensus 175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~-l~~-~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNA-LWL-NEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTE-EEE-EEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCC-EEE-EecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 0 1222222234477899999 554 443 3322 111222111110
Q ss_pred ---------cceeeeccCCCCeEEEEEcC-------CCCEEEEEecCCcEEEEeCCCCccccc--ee-ccccceEEEEEc
Q psy6213 175 ---------KCFYQFTAHSGPIFACDWHP-------EHAWLATASRDKTIKVWDLSIKPSLEY--SI-NTIASVSRIKWR 235 (330)
Q Consensus 175 ---------~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~-~~~~~v~~~~~~ 235 (330)
.+...+. +...+..+.|.+ +|+++++.-..+.|...++...+.... .. .....+..+++.
T Consensus 253 ~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp CBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred cCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 0111122 223566777764 467777777778888888775422111 11 223578999999
Q ss_pred CCCCeEEEEe
Q psy6213 236 PQRKFHLASC 245 (330)
Q Consensus 236 ~~~~~l~~~~ 245 (330)
|||..++++-
T Consensus 332 pdG~lyv~td 341 (353)
T 2g8s_A 332 PDGYLYVLTD 341 (353)
T ss_dssp TTSCEEEEEC
T ss_pred CCCcEEEEEe
Confidence 9998544443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0024 Score=52.54 Aligned_cols=228 Identities=12% Similarity=0.067 Sum_probs=121.5
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEec---ccccceeEEEEEec---CCCEEEEEec---C----C
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFN---DHKRTVNKVSFHYV---ESNWLISGSQ---D----G 120 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~---~~~~l~~~~~---d----~ 120 (330)
...++|.| ++++++ +..+|.|.+++... . ..+..+. ........|+++|+ ++.+.++-+. + .
T Consensus 31 P~~ia~~p-dG~l~V-~e~~g~I~~~d~~G--~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 31 PWSIAPLG-GGRYLV-TERPGRLVLISPSG--K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp EEEEEEEE-TTEEEE-EETTTEEEEECSSC--E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CeEEEEcC-CCeEEE-EeCCCEEEEEeCCC--c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 37899999 877555 45569999887322 1 2222221 12356789999983 2444444332 3 5
Q ss_pred cEEEEEeecC-------cee-eeeec-CCCCeEEEEEcCCCCcEEEEEec-------------CCcEEEEecCCCc----
Q psy6213 121 TMRLFDIRCQ-------EST-KIFHS-NTESVRDVEFNPHSPYAFASVSE-------------NGTIQQWDVRRPE---- 174 (330)
Q Consensus 121 ~i~i~d~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-------------dg~i~i~d~~~~~---- 174 (330)
.|..|+.... +.+ ..+.. .......++|.|+|. ++++.+. .|.|..++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 6777877643 111 11221 112346799999997 5665432 2456666654210
Q ss_pred ---cceeeeccCCCCeEEEEEcC-CCCEEEEEecCC---cEEEEeCCC--------C-------cccccee-ccccceEE
Q psy6213 175 ---KCFYQFTAHSGPIFACDWHP-EHAWLATASRDK---TIKVWDLSI--------K-------PSLEYSI-NTIASVSR 231 (330)
Q Consensus 175 ---~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~--------~-------~~~~~~~-~~~~~v~~ 231 (330)
.....-.++ .....++|+| ++.++++-...+ .|.+..... . ....... ........
T Consensus 185 pf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 185 PFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp SSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 001111223 2356899999 666555443322 243332111 0 0011111 12345778
Q ss_pred EEEc-------CCCCeEEEEeecccCCeEEEEEccCCCccc--eEe-ecCCCCeEEEEEecCCCEEEEee
Q psy6213 232 IKWR-------PQRKFHLASCSLVVDSSVNVWDIRRPYIPL--ASF-TEHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 232 ~~~~-------~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
++|. .+|.. +++.. ..+.|...++....... ..+ ......+.++++.|||.+.++..
T Consensus 264 ~~~y~g~~fp~~~G~l-~v~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWL-LIACL--RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEE-EEEET--TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcE-EEEEc--CCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 8884 46654 44443 47889988887532211 122 22245789999999998766654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0043 Score=50.73 Aligned_cols=184 Identities=11% Similarity=0.122 Sum_probs=107.7
Q ss_pred eeeeeecccCCcEEEEE------------cCCCcEEEEECCCCC-CCceeEEecc-----cccceeEEEEEec-CCC-EE
Q psy6213 54 CNDVAWSCIEENHIATG------------ATNGAVVVWNLGQIS-RSKQERVFND-----HKRTVNKVSFHYV-ESN-WL 113 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~------------~~dg~i~iw~~~~~~-~~~~~~~~~~-----~~~~i~~i~~~~~-~~~-~l 113 (330)
+.+++..| ++..++++ ..+|.|.++|..+.. +.+.+. +.+ ..-....+.+.++ ++. +|
T Consensus 52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~-~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELE-IIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECE-EECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEE-ccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 46777877 66555554 268999999987521 112222 222 2345677777652 232 34
Q ss_pred EEE-ec--CCcEEEEEeecCce----eeeeecC-CCCeEEEEEcCCCCcEEEEEe-----------------cCCcEEEE
Q psy6213 114 ISG-SQ--DGTMRLFDIRCQES----TKIFHSN-TESVRDVEFNPHSPYAFASVS-----------------ENGTIQQW 168 (330)
Q Consensus 114 ~~~-~~--d~~i~i~d~~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-----------------~dg~i~i~ 168 (330)
+++ .. +.+|.+|++..... +..+.+. -...+.+.+.++|. ++++.. ..|.|+.+
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 444 22 46788888875422 2233322 24578999999997 455543 12456666
Q ss_pred ecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCccc--cceeccccceEEEEEcC-CCCeEEEE
Q psy6213 169 DVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPSL--EYSINTIASVSRIKWRP-QRKFHLAS 244 (330)
Q Consensus 169 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~ 244 (330)
|.. + ...+...-...+.++|+||++.|+.+. ..+.|..|++.....+ ............+++.+ +|...+++
T Consensus 209 d~~---~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 209 SPN---D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp CTT---C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred ECC---e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEe
Confidence 653 2 222333345678999999998776655 5788999998643221 11123356678899999 58864434
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0016 Score=53.87 Aligned_cols=143 Identities=13% Similarity=0.173 Sum_probs=93.0
Q ss_pred cCCCCcEEEEEecCCcEEEEecCCCccceeeeccC----CCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc----
Q psy6213 149 NPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAH----SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE---- 220 (330)
Q Consensus 149 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---- 220 (330)
..++.. ++.+ .++.||.-++.... ..+.+... ...|..+..+|+|++||..+. ..|.|-.+..+....
T Consensus 29 ~~n~t~-i~~a-~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 29 SQNGTR-IVFI-QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp ETTTTE-EEEE-ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EcCCCE-EEEE-ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 344443 3332 34778888877422 33343322 236788999999999998875 589998887332110
Q ss_pred ---------ceec-----cccceEEEEEcCCC---CeEEEEeecccCCeEEEEEccCCC-ccceEee---------cCCC
Q psy6213 221 ---------YSIN-----TIASVSRIKWRPQR---KFHLASCSLVVDSSVNVWDIRRPY-IPLASFT---------EHKD 273 (330)
Q Consensus 221 ---------~~~~-----~~~~v~~~~~~~~~---~~l~~~~~~~~~~~i~i~d~~~~~-~~~~~~~---------~~~~ 273 (330)
...+ ...+|..+.|+|-+ ..|++-. .|+.|++||+.... .|. .+. ....
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt---sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ 180 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK---EDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVN 180 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE---TTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCC
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe---cCCEEEEEEcccCCCCCc-chhccccccCCCcccc
Confidence 1111 24679999999964 4555555 49999999998632 222 222 2225
Q ss_pred CeEEEEEecCCCEEEEee--cCCeEeee
Q psy6213 274 VVSGLAWRGDPQLFIASS--RVSIIPRA 299 (330)
Q Consensus 274 ~v~~~~~~~~~~~l~s~~--~dg~i~iw 299 (330)
.|.+++|.+++-.|...+ ..|.|+-.
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 789999999888888855 78888764
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0061 Score=49.62 Aligned_cols=238 Identities=9% Similarity=0.027 Sum_probs=121.2
Q ss_pred ccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeeccc---CCcEEEEE--cCCCcEE
Q psy6213 5 SPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI---EENHIATG--ATNGAVV 77 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~--~~dg~i~ 77 (330)
..-+.|+|.|||+++++. .|.|++++..+++......... ....-......++++|+ ++.+.++- ..++.|.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~-v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPG-VSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT-CCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCc-eeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 345789999999996665 8999999866555322211110 00011223488999982 24333332 2345566
Q ss_pred EEECCCCC-------CCcee-EEec-ccccceeEEEEEecCCCEEEEEec-------------CCcEEEEEeecCc----
Q psy6213 78 VWNLGQIS-------RSKQE-RVFN-DHKRTVNKVSFHYVESNWLISGSQ-------------DGTMRLFDIRCQE---- 131 (330)
Q Consensus 78 iw~~~~~~-------~~~~~-~~~~-~~~~~i~~i~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~---- 131 (330)
-|...... ..+.+ ..+. .....-..|.|.| ++.+.++.+. .|.|.-.+....-
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 66654411 01111 1121 1122456799998 7777776542 2455544543210
Q ss_pred ---eeeeeecCCCCeEEEEEcCCCCcEEEEE-ecCCcEEEEecCCCc-----------------cceeeeccCCCCeEEE
Q psy6213 132 ---STKIFHSNTESVRDVEFNPHSPYAFASV-SENGTIQQWDVRRPE-----------------KCFYQFTAHSGPIFAC 190 (330)
Q Consensus 132 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~i~~~ 190 (330)
....+...-.....++|+|++. ++++= +.++.=.+--+..+. .++..+..+......+
T Consensus 190 Pf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~ 268 (347)
T 3das_A 190 PFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI 268 (347)
T ss_dssp SSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred CCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence 0112222223456789999876 44332 222222222222211 1122222222355677
Q ss_pred EEcCCCCEEEEEecCCcEEEEeCCCCccc---c-ceeccccceEEEEEcCCCCeEEEEee
Q psy6213 191 DWHPEHAWLATASRDKTIKVWDLSIKPSL---E-YSINTIASVSRIKWRPQRKFHLASCS 246 (330)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~-~~~~~~~~v~~~~~~~~~~~l~~~~~ 246 (330)
+|. +|.++...-..+.|....+...... . ........+..++..|||..++++..
T Consensus 269 ~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td~ 327 (347)
T 3das_A 269 AYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTSN 327 (347)
T ss_dssp EEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEECT
T ss_pred EEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEcC
Confidence 776 4666666666667777676544211 1 11123467899999999986555543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0072 Score=50.17 Aligned_cols=236 Identities=13% Similarity=0.168 Sum_probs=147.9
Q ss_pred EEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC
Q psy6213 9 KHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS 87 (330)
Q Consensus 9 ~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 87 (330)
+.-.+|..+.++-- ...+.|+|+++.+....+..... |.-=.|- +.+.|+..+ +..|+-|+++.. .
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~--------VvfWkWi--s~~~l~lVT-~taVyHWsi~~~--s 136 (494)
T 1bpo_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDD--------VTFWKWI--SLNTVALVT-DNAVYHWSMEGE--S 136 (494)
T ss_dssp EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSC--------CCEEEEE--ETTEEEEEC-SSEEEEEESSSS--C
T ss_pred eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCC--------ceEEEec--CCCeEEEEc-CCeeEEecccCC--C
Confidence 34457777776666 89999999999887776665432 3445665 456666665 357999999752 4
Q ss_pred ceeEEecccc----cceeEEEEEecCCCEEEEEe-------cCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCC--Cc
Q psy6213 88 KQERVFNDHK----RTVNKVSFHYVESNWLISGS-------QDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHS--PY 154 (330)
Q Consensus 88 ~~~~~~~~~~----~~i~~i~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ 154 (330)
.+.+.+..|. ..|..-..++ +.++++..| -.|.+.+|..+ .+.-+.+++|......+....+. ..
T Consensus 137 ~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~ 214 (494)
T 1bpo_A 137 QPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEEST 214 (494)
T ss_dssp CCEEEEECCGGGTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEEST-TCCEEEECCSEEEEEEEECTTCSSEEE
T ss_pred CchhheecchhcccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecc-ccccchheeeeeeeEEEecCCCCCCce
Confidence 5555665543 3455556665 666665433 24678888876 34456677776555444443221 22
Q ss_pred EEEEEecC---CcEEEEecCCC--ccce------eeec---cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc
Q psy6213 155 AFASVSEN---GTIQQWDVRRP--EKCF------YQFT---AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE 220 (330)
Q Consensus 155 ~~~~~~~d---g~i~i~d~~~~--~~~~------~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 220 (330)
+++.+... +.+++.++..+ +.+. ..+. .-.+-..++..++....+..-+.-|.+.+||+.++..+.
T Consensus 215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence 45544443 78999998653 1111 1111 123445678888888899999999999999999997665
Q ss_pred ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 221 YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 221 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
...-...+|...+-+....-+++.. ..|.|.-..++...
T Consensus 295 ~nrIs~~~iF~t~~~~~~~Gi~~Vn---r~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 295 MNRISGETIFVTAPHEATAGIIGVN---RKGQVLSVCVEEEN 333 (494)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEE---TTCEEEEEEECTTT
T ss_pred eecccCCceEEecccCCCCcEEEEc---cCceEEEEEEcccc
Confidence 5555556665555555544434443 47777766666554
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0036 Score=50.05 Aligned_cols=177 Identities=8% Similarity=0.067 Sum_probs=89.3
Q ss_pred CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC-----CcEEEEECCCCCC--CceeEEeccc
Q psy6213 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN-----GAVVVWNLGQISR--SKQERVFNDH 96 (330)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~--~~~~~~~~~~ 96 (330)
..+.+||..+++.......+.... . .+++. . ++.+++.|+.+ ..+.+||..+... ......+...
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~-----~-~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~ 102 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRR-----Y-VASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR 102 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCB-----S-CEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC
T ss_pred eEEEEEcCCCCeEEeCCCCChhhc-----c-ccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC
Confidence 478889988876544332221111 0 12222 2 56777888765 3588999877320 2222222211
Q ss_pred ccceeEEEEEecCCCEEEEEecC-----CcEEEEEeecCceeee--eecCCCCeEEEEEcCCCCcEEEEEecC-----Cc
Q psy6213 97 KRTVNKVSFHYVESNWLISGSQD-----GTMRLFDIRCQESTKI--FHSNTESVRDVEFNPHSPYAFASVSEN-----GT 164 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~d-----g~ 164 (330)
... .+++.. ++.+++.|+.+ ..+.+||+.+.+-... +.........+.+ ++. +++.|+.+ ..
T Consensus 103 r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~ 176 (301)
T 2vpj_A 103 RGL-AGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNS 176 (301)
T ss_dssp CBS-CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCC
T ss_pred ccc-eeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCE-EEEECCCCCCcccce
Confidence 111 122222 56777777654 3588888876553322 1111111122222 444 67777654 45
Q ss_pred EEEEecCCCccc-eeeeccCCCCeEEEEEcCCCCEEEEEecC-----CcEEEEeCCCC
Q psy6213 165 IQQWDVRRPEKC-FYQFTAHSGPIFACDWHPEHAWLATASRD-----KTIKVWDLSIK 216 (330)
Q Consensus 165 i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 216 (330)
+.+||+.+..-. +..+.........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 177 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 177 VEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 888998763211 1111111111122222 56777777764 46899998876
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0081 Score=49.34 Aligned_cols=234 Identities=11% Similarity=0.079 Sum_probs=120.0
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEE----ecccccceeEEEEEec---CCCEEEEEec-------CC
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERV----FNDHKRTVNKVSFHYV---ESNWLISGSQ-------DG 120 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~i~~i~~~~~---~~~~l~~~~~-------d~ 120 (330)
..++|.| +++.|+++...|.|++++.... ....+.. ..........++++|+ ++.+.++-.. ..
T Consensus 21 ~~i~~~p-dG~~l~V~e~~G~i~~~~~~g~-~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 21 WALAFLP-DNHGMLITLRGGELRHWQAGKG-LSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp EEEEECS-TTCCEEEEETTTEEEEEETTTE-ECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred EEEEEcC-CCCEEEEEeCCceEEEEeCCCc-eeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 7899999 8883444556799999985321 0011111 1122345689999983 3444444332 23
Q ss_pred cEEEEEeecCc----eee-eeec------CCCCeEEEEEcCCCCcEEEEEec-------------CCcEEEEecCCCc--
Q psy6213 121 TMRLFDIRCQE----STK-IFHS------NTESVRDVEFNPHSPYAFASVSE-------------NGTIQQWDVRRPE-- 174 (330)
Q Consensus 121 ~i~i~d~~~~~----~~~-~~~~------~~~~v~~~~~~~~~~~~~~~~~~-------------dg~i~i~d~~~~~-- 174 (330)
.|..+++.... ... .+.. .......++|.|++. ++++.+. .|.|.-++....-
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 56666664321 111 1111 111245799999995 5555433 2457666665310
Q ss_pred -c--------ceeee-ccCCCCeEEEEEcC-CCCEEEEEec-CCcEEEEeCCCCcc------------------------
Q psy6213 175 -K--------CFYQF-TAHSGPIFACDWHP-EHAWLATASR-DKTIKVWDLSIKPS------------------------ 218 (330)
Q Consensus 175 -~--------~~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~------------------------ 218 (330)
. ....+ .++ .....++|+| ++.++++-.. ++.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 0 11111 122 3467899999 5654443221 11112221211100
Q ss_pred ------ccceeccccceEEEEEcC-------CCCeEEEEeecccCCeEEEEEccCCCccceE--e-ecCCCCeEEEEEec
Q psy6213 219 ------LEYSINTIASVSRIKWRP-------QRKFHLASCSLVVDSSVNVWDIRRPYIPLAS--F-TEHKDVVSGLAWRG 282 (330)
Q Consensus 219 ------~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~--~-~~~~~~v~~~~~~~ 282 (330)
......+...+..++|.. ++.+ +++.- ..+.|...++..+.. ... + ......+.++++.|
T Consensus 257 ~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l-~v~~~--~~~~v~~~~~~~~~~-~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 257 VAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKL-FIGAL--KDKDVIVMSVNGDKV-TEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp CTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEE-EEEET--TTTEEEEEEEETTEE-EEEEEESGGGCCCEEEEEECT
T ss_pred CCCccCCeEEeCCCcCcceeEEECCccCcccCCcE-EEEEc--cCCEEEEEEeCCCeE-eeeEEcccCCCCceeEEEECC
Confidence 000111223567777764 4554 44443 478888888875432 221 1 12235799999999
Q ss_pred CCCEEEEee-cCCeE
Q psy6213 283 DPQLFIASS-RVSII 296 (330)
Q Consensus 283 ~~~~l~s~~-~dg~i 296 (330)
||.+.++.. .+|.|
T Consensus 333 dG~lyv~td~~~g~I 347 (353)
T 2g8s_A 333 DGYLYVLTDESSGEL 347 (353)
T ss_dssp TSCEEEEECSTTEEE
T ss_pred CCcEEEEEeCCCCEE
Confidence 998666533 35544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0036 Score=59.68 Aligned_cols=229 Identities=10% Similarity=0.098 Sum_probs=134.4
Q ss_pred eeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec-Cceee
Q psy6213 56 DVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC-QESTK 134 (330)
Q Consensus 56 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~ 134 (330)
+.-.+| ..+.+|.-. ...+.|+|+++ ...++.+.- ..+|.-=.|- +.+.|+-.+ +..|+-|++.. ..+.+
T Consensus 70 sAIMnP-~~~iiALra-g~~lQiFnl~~---k~klks~~~-~e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~~s~P~k 140 (1630)
T 1xi4_A 70 SAIMNP-ASKVIALKA-GKTLQIFNIEM---KSKMKAHTM-TDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVK 140 (1630)
T ss_pred hhccCC-CcceEEEec-CCeEEEeehHH---hhhhccccc-CCCceEEEec--CCCeeEEEc-CCeEEEeccCCCCccHH
Confidence 344567 677777665 67899999987 444444332 3456555665 566666666 45899999964 34444
Q ss_pred eeecC----CCCeEEEEEcCCCCcEEEEEe------cCCcEEEEecCCCccceeeeccCCCCeEEEEEcC--C-CCEEEE
Q psy6213 135 IFHSN----TESVRDVEFNPHSPYAFASVS------ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHP--E-HAWLAT 201 (330)
Q Consensus 135 ~~~~~----~~~v~~~~~~~~~~~~~~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~l~~ 201 (330)
.+..| ...|..-..+++.++++++|- -.|.+.+|..+. +..+.+.+|.+.-..+.... . .+.++.
T Consensus 141 ~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er--~~sQ~iegha~~F~~~~~~~~~~~~~l~~f 218 (1630)
T 1xi4_A 141 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCF 218 (1630)
T ss_pred HHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc--ccchhhhHhHhhhheeccCCCCCCceEEEE
Confidence 44433 456777788899998777764 357899999875 33455666655443333321 1 223332
Q ss_pred Eec---CCcEEEEeCCCCc---cc------cceec---cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccce
Q psy6213 202 ASR---DKTIKVWDLSIKP---SL------EYSIN---TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA 266 (330)
Q Consensus 202 ~~~---dg~i~i~d~~~~~---~~------~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~ 266 (330)
+.. .+.++|.++.... .. ....+ ...-..++..++.-..++... .-|.+.+||+.++.. +.
T Consensus 219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it---k~G~~~~~d~~t~~~-i~ 294 (1630)
T 1xi4_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTC-IY 294 (1630)
T ss_pred EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe---cCceEEEEecccchh-hh
Confidence 222 2689999885430 10 01111 123345666777666544444 599999999999876 44
Q ss_pred EeecCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 267 SFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
.-+-...+|...+-++...-++.....|.|.--
T Consensus 295 ~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v 327 (1630)
T 1xi4_A 295 MNRISGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (1630)
T ss_pred hccccCCceEEeccCCCCCceEEEcCCceEEEE
Confidence 444444555544444433334444566655443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0052 Score=49.27 Aligned_cols=224 Identities=8% Similarity=0.017 Sum_probs=109.8
Q ss_pred eecC---CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC----CcEEEEECCCCCCCceeE
Q psy6213 19 AQPS---RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN----GAVVVWNLGQISRSKQER 91 (330)
Q Consensus 19 ~~~g---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~ 91 (330)
+..| ...+.+||..+++............ . .+++. - ++.+++.|+.+ ..+.+||..+. ......
T Consensus 16 ~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~-----~-~~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~ 86 (306)
T 3ii7_A 16 ALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRR-----D-AACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKD-SWYSKL 86 (306)
T ss_dssp EEECCSSTTSEEEEETTTTEEEECCCCSCCCB-----S-CEEEE-E-TTEEEEECCBSSSBCCEEEEEETTTT-EEEEEE
T ss_pred EEeCCCCCceEEEecCCCCCEecCCCCCcccc-----e-eEEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCC-eEEECC
Confidence 5555 4678999998877554432222111 0 12222 2 56777888755 56888998762 122222
Q ss_pred EecccccceeEEEEEecCCCEEEEEecC------CcEEEEEeecCceeee--eecCCCCeEEEEEcCCCCcEEEEEec--
Q psy6213 92 VFNDHKRTVNKVSFHYVESNWLISGSQD------GTMRLFDIRCQESTKI--FHSNTESVRDVEFNPHSPYAFASVSE-- 161 (330)
Q Consensus 92 ~~~~~~~~i~~i~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~-- 161 (330)
.+...... .+++.. ++.+++.|+.+ ..+.+||..+.+-... +.........+. -++. +++.|+.
T Consensus 87 ~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~-iyv~GG~~~ 160 (306)
T 3ii7_A 87 GPPTPRDS-LAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGL-IYVCGGSLG 160 (306)
T ss_dssp CCSSCCBS-CEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTE-EEEECCEES
T ss_pred CCCccccc-eeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCE-EEEECCCCC
Confidence 22211111 122222 67777888765 4688999877653322 111111112222 2444 6777654
Q ss_pred -------CCcEEEEecCCCccceeeeccCC--CCeEEEEEcCCCCEEEEEecC-----CcEEEEeCCCCcc--ccceecc
Q psy6213 162 -------NGTIQQWDVRRPEKCFYQFTAHS--GPIFACDWHPEHAWLATASRD-----KTIKVWDLSIKPS--LEYSINT 225 (330)
Q Consensus 162 -------dg~i~i~d~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~--~~~~~~~ 225 (330)
...+.+||+.+.. -..+.... ..-.++... ++++++.|+.+ ..+.+||+.+.+- +......
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 237 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK 237 (306)
T ss_dssp CTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC
T ss_pred CCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC
Confidence 3458899988632 11221111 111122222 56777777654 3588999877521 1111111
Q ss_pred ccceEEEEEcCCCCeEEEEeec--ccCCeEEEEEccCCC
Q psy6213 226 IASVSRIKWRPQRKFHLASCSL--VVDSSVNVWDIRRPY 262 (330)
Q Consensus 226 ~~~v~~~~~~~~~~~l~~~~~~--~~~~~i~i~d~~~~~ 262 (330)
......+.+ +++.+++++.. ..-..+.+||+.+.+
T Consensus 238 r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 238 GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 122233333 45543444320 012578888887754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0034 Score=50.19 Aligned_cols=224 Identities=9% Similarity=0.028 Sum_probs=105.8
Q ss_pred CCcEEEEEc-CC-----CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC-----CcEEEEEeecCc
Q psy6213 63 EENHIATGA-TN-----GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD-----GTMRLFDIRCQE 131 (330)
Q Consensus 63 ~~~~l~~~~-~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~ 131 (330)
++.+++.|+ .+ ..+.+||..+. ....+..+.... .-.+++.. ++.+++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r-~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQ-EWSFLPSITRKR-RYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTT-EEEECCCCSSCC-BSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCC-eEEeCCCCChhh-ccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 456666666 33 36888888762 112221121111 11222222 67777777755 468899987765
Q ss_pred ---eeee--eecCCCCeEEEEEcCCCCcEEEEEecC-----CcEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEE
Q psy6213 132 ---STKI--FHSNTESVRDVEFNPHSPYAFASVSEN-----GTIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLA 200 (330)
Q Consensus 132 ---~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~ 200 (330)
-... +.........+.+ ++. +++.|+.+ ..+.+||+.+..- .+..+......-..+.+ ++++++
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 164 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATTL--GDM-IYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYC 164 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEE
T ss_pred CCeeEECCCCCCCccceeEEEE--CCE-EEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEE
Confidence 2222 1111111222222 344 67777654 3588889876321 11111111111112222 677777
Q ss_pred EEecC-----CcEEEEeCCCCccccc-eecc-ccceEEEEEcCCCCeEEEEeeccc---CCeEEEEEccCCCccceEeec
Q psy6213 201 TASRD-----KTIKVWDLSIKPSLEY-SINT-IASVSRIKWRPQRKFHLASCSLVV---DSSVNVWDIRRPYIPLASFTE 270 (330)
Q Consensus 201 ~~~~d-----g~i~i~d~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~~~~~~~~---~~~i~i~d~~~~~~~~~~~~~ 270 (330)
.|+.+ ..+.+||+.+.+-... ..+. ......+.+ +++ +++.++... ...+.+||+.+..- ..+..
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W--~~~~~ 239 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDH-IYVVGGFDGTAHLSSVEAYNIRTDSW--TTVTS 239 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTEE--EEECC
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCE-EEEEeCCCCCcccceEEEEeCCCCcE--EECCC
Confidence 77754 4588999876622111 1111 111222222 444 444444111 25789999987642 12211
Q ss_pred -CCCC-eEEEEEecCCCEEEEeecCC-----eEeeeec
Q psy6213 271 -HKDV-VSGLAWRGDPQLFIASSRVS-----IIPRAKN 301 (330)
Q Consensus 271 -~~~~-v~~~~~~~~~~~l~s~~~dg-----~i~iw~~ 301 (330)
.... -.+++. -++++++.|+.++ .+.+|+.
T Consensus 240 ~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 240 MTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp CSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEET
T ss_pred CCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcC
Confidence 1111 112222 2677778887653 3555554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.81 E-value=0.025 Score=53.93 Aligned_cols=174 Identities=10% Similarity=0.083 Sum_probs=94.3
Q ss_pred EEEEEeecCceeeeeecC-CCCeEEEE---EcCCCCcEEEEEe----------cCCcEEEEecCCCccceeeeccCCCCe
Q psy6213 122 MRLFDIRCQESTKIFHSN-TESVRDVE---FNPHSPYAFASVS----------ENGTIQQWDVRRPEKCFYQFTAHSGPI 187 (330)
Q Consensus 122 i~i~d~~~~~~~~~~~~~-~~~v~~~~---~~~~~~~~~~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~i 187 (330)
|++.|..+.+.+..++-. ...+.+++ |..+.+.++++|+ ..|.|++|++....-........++++
T Consensus 809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v 888 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV 888 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence 566666666655554432 23344544 4333334677775 357899999874211111222346788
Q ss_pred EEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceE
Q psy6213 188 FACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLAS 267 (330)
Q Consensus 188 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~ 267 (330)
++++-- +|+ |+++- ...+++|++...+.+.........+..+.....+.+++++-. -..+.++..+.....+..
T Consensus 889 ~al~~~-~g~-Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~---~~Sv~~~~y~~~~~~L~~ 962 (1158)
T 3ei3_A 889 YSMVEF-NGK-LLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDL---MRSVLLLAYKPMEGNFEE 962 (1158)
T ss_dssp EEEEEE-TTE-EEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEES---SBCEEEEEEETTTTEEEE
T ss_pred EEEeee-CCE-EEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEh---hheEEEEEEEcCCCeEEE
Confidence 888754 454 44443 368999999866433311111111222222234555444443 555665544322211333
Q ss_pred e--ecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 268 F--TEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 268 ~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+ ..+...++++.+-.+ ..++.+..+|.+.+.+..
T Consensus 963 ~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~ 998 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKD 998 (1158)
T ss_dssp EEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEEC
T ss_pred EEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecC
Confidence 3 334567888888655 467778999999988643
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0085 Score=47.90 Aligned_cols=176 Identities=14% Similarity=0.194 Sum_probs=87.4
Q ss_pred CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCC-----cEEEEECCCCCCCceeEEeccccc
Q psy6213 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG-----AVVVWNLGQISRSKQERVFNDHKR 98 (330)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~ 98 (330)
..+..||+.+.+.......+.... . .+++.. ++.+++.|+.++ .+.+||..+. .......+.....
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~-~-----~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~ 100 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRC-R-----AGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKD-QWTSVANMRDRRS 100 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCB-S-----CEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTT-EEEEECCCSSCCB
T ss_pred CcEEEEcCcCCcEeEcccCCcccc-c-----ceEEEE--CCEEEEEeCcCCCccccceEEECCCCC-ceeeCCCCCcccc
Confidence 468889988876544322221111 0 122221 567777777553 5888888762 1222222211111
Q ss_pred ceeEEEEEecCCCEEEEEecCC-----cEEEEEeecCceeee--eecCCCCeEEEEEcCCCCcEEEEEecC-------Cc
Q psy6213 99 TVNKVSFHYVESNWLISGSQDG-----TMRLFDIRCQESTKI--FHSNTESVRDVEFNPHSPYAFASVSEN-------GT 164 (330)
Q Consensus 99 ~i~~i~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~d-------g~ 164 (330)
. .+++.. ++.+++.|+.++ .+.+||+.+.+-... +....... +++.. ++. +++.|+.+ ..
T Consensus 101 ~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~-iyv~GG~~~~~~~~~~~ 174 (302)
T 2xn4_A 101 T-LGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGVV-GGL-LYAVGGYDVASRQCLST 174 (302)
T ss_dssp S-CEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTE-EEEECCEETTTTEECCC
T ss_pred c-eEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEEE-CCE-EEEEeCCCCCCCccccE
Confidence 1 222222 677778887653 477888776543322 11111111 22222 343 67776543 35
Q ss_pred EEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEecC-----CcEEEEeCCCC
Q psy6213 165 IQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLATASRD-----KTIKVWDLSIK 216 (330)
Q Consensus 165 i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 216 (330)
+.+||+.+..- .+..+.........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 175 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 175 VECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred EEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 88899876321 11111111111122222 57777887764 36889998765
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.019 Score=47.60 Aligned_cols=144 Identities=8% Similarity=0.146 Sum_probs=92.0
Q ss_pred CCCEEEEEecCCcEEEEEeecCceeeeeecC----CCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc--------
Q psy6213 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSN----TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC-------- 176 (330)
Q Consensus 109 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~-------- 176 (330)
++..++.+- ++.||.-++......+.++.. -..+..+..+|+|. +++..+ +..|.+..+..+...
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCccccccc
Confidence 555555554 467777777644445555543 23688899999998 455544 568899888732110
Q ss_pred ---eeeecc------CCCCeEEEEEcC---CCCEEEEEecCCcEEEEeCCCCcc-ccce------e---ccccceEEEEE
Q psy6213 177 ---FYQFTA------HSGPIFACDWHP---EHAWLATASRDKTIKVWDLSIKPS-LEYS------I---NTIASVSRIKW 234 (330)
Q Consensus 177 ---~~~~~~------~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~-~~~~------~---~~~~~v~~~~~ 234 (330)
.+.+.- ...+|..+.|+| .+..|++-..|+.|++||+..... .... . .....+.+++|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence 112221 246799999999 456899999999999999986321 1100 0 11256889999
Q ss_pred cCCCCeEEEEeecccCCeEEEE
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVW 256 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~ 256 (330)
.+++-.|.+... ..+|.|+-.
T Consensus 188 g~~~lTLYvl~~-t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNT-TEGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEEC-TTSCEEEEE
T ss_pred cCCCcEEEEEec-CCCCCEEEE
Confidence 998877666442 036777653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.012 Score=44.16 Aligned_cols=173 Identities=8% Similarity=-0.052 Sum_probs=93.5
Q ss_pred CCEEEEEecCCcEEEEEeecCce------eeeeec-CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc
Q psy6213 110 SNWLISGSQDGTMRLFDIRCQES------TKIFHS-NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA 182 (330)
Q Consensus 110 ~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~ 182 (330)
..+|++...| +++.=....+.. ...+-. .=..+..++|+|++. +.++ .+|.++-.+..+.. ...-+.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~-~~~W~~- 77 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHD-NDNWMG- 77 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCST-TCCHHH-
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCC-cccccc-
Confidence 4456666666 555443333321 111111 123677999999886 5555 78887777765421 111111
Q ss_pred CCCC--------eEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceec-------cccceEEEEEcCCCCeEEEEeec
Q psy6213 183 HSGP--------IFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN-------TIASVSRIKWRPQRKFHLASCSL 247 (330)
Q Consensus 183 ~~~~--------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~ 247 (330)
.... -..+.|.|+|.+.++ .||.|+-++..+......... .=..+..+.+.|+|.. .+..
T Consensus 78 s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~L-yav~-- 152 (236)
T 1tl2_A 78 RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL-YAVH-- 152 (236)
T ss_dssp HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE-EEEE--
T ss_pred cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceE-EEEe--
Confidence 1122 368899999987777 669998887644322111111 1146799999999984 4433
Q ss_pred ccCCeEEEEEccCCCc----c-ceEee-cCCCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 248 VVDSSVNVWDIRRPYI----P-LASFT-EHKDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 248 ~~~~~i~i~d~~~~~~----~-~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
++.++-........ . ...+. ..-..-..+.|.|++.+.+.. +|.++
T Consensus 153 --dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 153 --GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp --TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred --CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 55544322221110 0 11111 222344557799999877766 77444
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.015 Score=46.67 Aligned_cols=185 Identities=9% Similarity=0.077 Sum_probs=92.3
Q ss_pred CCCe-eecC-----CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC----C-----CcEEEE
Q psy6213 15 DNGL-AQPS-----RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT----N-----GAVVVW 79 (330)
Q Consensus 15 ~~~~-~~~g-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d-----g~i~iw 79 (330)
++.+ +..| -..+.+||..+++.......+.... . .+++.. ++.+++.|+. + ..+.+|
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~-----~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~ 95 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRS-G-----LAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCY 95 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCB-S-----CEEEEE--TTEEEEECCEEEETTEEEECCCEEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccc-c-----ceEEEE--CCEEEEECCCcCCCCCCeecceEEEE
Confidence 4555 4444 2578889988876554422221111 0 122222 5677777775 2 358888
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC-----CcEEEEEeecCceeee--eecCCCCeEEEEEcCCC
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD-----GTMRLFDIRCQESTKI--FHSNTESVRDVEFNPHS 152 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~ 152 (330)
|..+. ....+..+...... .+++.. ++.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++
T Consensus 96 d~~~~-~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 169 (308)
T 1zgk_A 96 NPMTN-QWSPCAPMSVPRNR-IGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR 169 (308)
T ss_dssp ETTTT-EEEECCCCSSCCBT-CEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT
T ss_pred CCCCC-eEeECCCCCcCccc-cEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC
Confidence 88762 12222212111111 122222 56777777644 3588888876543222 1111111222222 34
Q ss_pred CcEEEEEecC-----CcEEEEecCCCccc-eeeeccCCCCeEEEEEcCCCCEEEEEecC-----CcEEEEeCCCC
Q psy6213 153 PYAFASVSEN-----GTIQQWDVRRPEKC-FYQFTAHSGPIFACDWHPEHAWLATASRD-----KTIKVWDLSIK 216 (330)
Q Consensus 153 ~~~~~~~~~d-----g~i~i~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 216 (330)
. +++.|+.+ ..+.+||+.+..-. +..+......-..+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 170 ~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 170 L-LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp E-EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred E-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 3 67777654 45888998763211 1111111111122222 67777777764 46899998776
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.014 Score=46.55 Aligned_cols=225 Identities=9% Similarity=0.098 Sum_probs=104.2
Q ss_pred CCcEEEEEcCC----CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC-----CcEEEEEeecCcee
Q psy6213 63 EENHIATGATN----GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD-----GTMRLFDIRCQEST 133 (330)
Q Consensus 63 ~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~ 133 (330)
++.+++.|+.+ ..+..||+.+. ....+..+..... -.+++.. ++.+++.|+.+ ..+.+||..+.+-.
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~-~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEE-RWHQVAELPSRRC-RAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTT-EEEEECCCSSCCB-SCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCC-cEeEcccCCcccc-cceEEEE--CCEEEEEeCcCCCccccceEEECCCCCcee
Confidence 34566666643 35788888762 1222211111111 1122222 67777777754 35888888766432
Q ss_pred ee--eecCCCCeEEEEEcCCCCcEEEEEecCC-----cEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEecC
Q psy6213 134 KI--FHSNTESVRDVEFNPHSPYAFASVSENG-----TIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLATASRD 205 (330)
Q Consensus 134 ~~--~~~~~~~v~~~~~~~~~~~~~~~~~~dg-----~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 205 (330)
.. +.........+.+ ++. +++.|+.++ .+.+||+.+..- .+..+....... +++. -++++++.|+.+
T Consensus 91 ~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~ 165 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL--NGL-LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV-VGGLLYAVGGYD 165 (302)
T ss_dssp EECCCSSCCBSCEEEEE--TTE-EEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEE
T ss_pred eCCCCCccccceEEEEE--CCE-EEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE-ECCEEEEEeCCC
Confidence 22 1111111222222 344 777777653 477888876321 111111111111 2222 256777777643
Q ss_pred -------CcEEEEeCCCCccccc-eec-cccceEEEEEcCCCCeEEEEeeccc---CCeEEEEEccCCCccceEeecCCC
Q psy6213 206 -------KTIKVWDLSIKPSLEY-SIN-TIASVSRIKWRPQRKFHLASCSLVV---DSSVNVWDIRRPYIPLASFTEHKD 273 (330)
Q Consensus 206 -------g~i~i~d~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~ 273 (330)
..+.+||+.+.+-... ..+ .......+.+ +++. ++.++... ...+.+||+.+..- ..+.....
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i-yv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~~~ 240 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLL-YAVGGHDGPLVRKSVEVYDPTTNAW--RQVADMNM 240 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEE-EEECCBSSSSBCCCEEEEETTTTEE--EEECCCSS
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEE-EEECCCCCCcccceEEEEeCCCCCE--eeCCCCCC
Confidence 3588999876521111 111 1112222222 4454 44443101 24788999887642 22211111
Q ss_pred --CeEEEEEecCCCEEEEeecCCe-----Eeeeecc
Q psy6213 274 --VVSGLAWRGDPQLFIASSRVSI-----IPRAKNI 302 (330)
Q Consensus 274 --~v~~~~~~~~~~~l~s~~~dg~-----i~iw~~~ 302 (330)
.-.+++. -++++++.|+.++. +.+|+..
T Consensus 241 ~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 241 CRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp CCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred ccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCC
Confidence 1111222 26778888876643 5666544
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.018 Score=46.12 Aligned_cols=225 Identities=10% Similarity=0.031 Sum_probs=105.9
Q ss_pred CcEEEEEcCC--CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC----CcEEEEEeecCceeeee-
Q psy6213 64 ENHIATGATN--GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD----GTMRLFDIRCQESTKIF- 136 (330)
Q Consensus 64 ~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~- 136 (330)
+.+++.|+.+ ..+.+||..+. +...+..+...... .+++.. ++.+++.|+.+ ..+.+||..+.+-...-
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDY-SWTDIRCPFEKRRD-AACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTT-EEEECCCCSCCCBS-CEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred ceEEEEeCCCCCceEEEecCCCC-CEecCCCCCcccce-eEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 4456666643 56888998762 12222222111111 122222 67777888755 57888998776533221
Q ss_pred -ecCCCCeEEEEEcCCCCcEEEEEecC------CcEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEec----
Q psy6213 137 -HSNTESVRDVEFNPHSPYAFASVSEN------GTIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLATASR---- 204 (330)
Q Consensus 137 -~~~~~~v~~~~~~~~~~~~~~~~~~d------g~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---- 204 (330)
.........+.+ ++. +++.|+.+ ..+.+||..+..- .+..+......-..+.+ ++++++.|+.
T Consensus 88 ~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 88 PPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNN 162 (306)
T ss_dssp CSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCT
T ss_pred CCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCC
Confidence 111111222222 444 67777755 4588899876321 11111111111112222 5677777763
Q ss_pred -----CCcEEEEeCCCCccccc-eecc-ccceEEEEEcCCCCeEEEEeeccc---CCeEEEEEccCCCc-cceEeecCCC
Q psy6213 205 -----DKTIKVWDLSIKPSLEY-SINT-IASVSRIKWRPQRKFHLASCSLVV---DSSVNVWDIRRPYI-PLASFTEHKD 273 (330)
Q Consensus 205 -----dg~i~i~d~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~~~~~~~~---~~~i~i~d~~~~~~-~~~~~~~~~~ 273 (330)
-..+.+||+.+.+-... ..+. ......+.+ +++.+++++. .. -..+.+||+.+..- .+..+.....
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 239 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQ-NGLGGLDNVEYYDIKLNEWKMVSPMPWKGV 239 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCE-ETTEEBCCEEEEETTTTEEEECCCCSCCBS
T ss_pred CcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCC-CCCCCCceEEEeeCCCCcEEECCCCCCCcc
Confidence 34588999877622111 1111 112222222 4554344332 11 24688999887642 0111111111
Q ss_pred CeEEEEEecCCCEEEEeecC-----CeEeeeecc
Q psy6213 274 VVSGLAWRGDPQLFIASSRV-----SIIPRAKNI 302 (330)
Q Consensus 274 ~v~~~~~~~~~~~l~s~~~d-----g~i~iw~~~ 302 (330)
....+.+ ++++++.|+.+ ..+.+|+..
T Consensus 240 ~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 240 TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 1222223 67788888755 345555543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.061 Score=49.15 Aligned_cols=260 Identities=10% Similarity=0.061 Sum_probs=143.5
Q ss_pred ccceEEEEeeCCCe-eecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCC
Q psy6213 5 SPVHKHGLKADNGL-AQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83 (330)
Q Consensus 5 ~~v~~~~~s~~~~~-~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 83 (330)
..|+++.-.++|.+ +.+.+| +..||-..-+ .+... .. .....|.++.-.. ...|..|+.+| +..||..+
T Consensus 22 n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~---~~~~~-~~--~~~~~i~~i~~d~--~g~lWigT~~G-l~~yd~~~ 91 (758)
T 3ott_A 22 SVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQ---QHFTY-GE--NNNTRIYCGVIID--NTYLYMGTDNG-ILVYNYRA 91 (758)
T ss_dssp CCEEEEEECTTSCEEEEESSC-EEEECSSCEE---ECSCT-TS--TTSSCEEEEEEET--TTEEEEEETTE-EEEEETTT
T ss_pred ceEEEEEECCCCCEEEEECCC-ccccCCCceE---EEEcc-CC--CCCceEEEEEEcC--CCcEEEEeCCC-eEEEeCCC
Confidence 46888888888877 544355 4556532211 11111 00 1122356666554 45666676665 78899876
Q ss_pred CCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee-----cCCCCeEEEEEcCCCCcEEEE
Q psy6213 84 ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH-----SNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~ 158 (330)
.............|.++... ++ .|..++.+ -+..+|..+++.. .+. .....|.++...+++. +..
T Consensus 92 ---~~f~~~~~~~~~~i~~i~~~--~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~--lWi 161 (758)
T 3ott_A 92 ---DRYEQPETDFPTDVRTMALQ--GD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQ--IYV 161 (758)
T ss_dssp ---TEECCCSCCCCSCEEEEEEE--TT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCC--EEE
T ss_pred ---CEEECcccCCCceEEEEEec--CC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCC--EEE
Confidence 22211111122346666532 44 46566655 6888887655432 221 1235688888887776 444
Q ss_pred EecCCcEEEEecCCCccceeeecc----CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEE
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTA----HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKW 234 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 234 (330)
++.+ -+..+|..+.......... ....|.++...+++..|..|+. +-+..+|..+.+...........|.++..
T Consensus 162 gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~ 239 (758)
T 3ott_A 162 GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLAL 239 (758)
T ss_dssp EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEE
T ss_pred EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEE
Confidence 5554 4778887652211111111 1234788888777776666664 45888887765322211112356888888
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCccceEee--------cCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT--------EHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
.++|.. .++. ++-+.+++..+... ..+. -....|.++...++|.+-+ |+..|
T Consensus 240 d~~g~l-WigT----~~Gl~~~~~~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G 299 (758)
T 3ott_A 240 DGNGDL-LAGT----DNGLYVYHNDTTPL--QHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG 299 (758)
T ss_dssp CTTCCE-EEEE----TTEEEEECCTTSCC--EEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS
T ss_pred cCCCCE-EEEe----CCceeEEecCCCcE--EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc
Confidence 888875 3333 34578888766542 2221 1224688998887776554 44556
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.042 Score=45.00 Aligned_cols=97 Identities=7% Similarity=0.005 Sum_probs=47.0
Q ss_pred eeCCCe-eecC--CCeEEEEEcCC--cceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-C---------CcEE
Q psy6213 13 KADNGL-AQPS--RNVFKIFLIKD--TEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-N---------GAVV 77 (330)
Q Consensus 13 s~~~~~-~~~g--d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d---------g~i~ 77 (330)
.-++++ +..| ...+.+||..+ .+.......+..... . .+++.. ++.+++.|+. + ..+.
T Consensus 17 ~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~----~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~ 89 (357)
T 2uvk_A 17 IDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRD----Q-ATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVH 89 (357)
T ss_dssp EETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCB----S-CEEEEE--TTEEEEECCEEECTTSCEEECCCEE
T ss_pred EECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCc----c-ceEEEE--CCEEEEEcCCCCCCCccceeeccEE
Confidence 336666 6666 66888899874 333332222200110 0 122222 5677777776 2 3588
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD 119 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d 119 (330)
+||..+. ....+.........-.++.. . ++.+++.|+.+
T Consensus 90 ~yd~~~~-~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~ 128 (357)
T 2uvk_A 90 KYNPKTN-SWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVN 128 (357)
T ss_dssp EEETTTT-EEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCC
T ss_pred EEeCCCC-cEEECCCCCCcccccceEEE-E-CCEEEEEeCcC
Confidence 8998762 12222211101111112222 2 67888888754
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.062 Score=46.21 Aligned_cols=120 Identities=9% Similarity=0.054 Sum_probs=76.0
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc-----------c-eeeeccCCCCeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK-----------C-FYQFTAHSGPIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~-----------~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
....+..+|+|+++++++--+.++.++|+++-.. . ....+ -.-.....+|.++|....+.--|.+|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence 3456789999999888888899999999884211 1 11122 234567889999996566666899999
Q ss_pred EEeCCCC------c---cccceeccccceEEEEE------cCCCCeEEEEeecccCC----------eEEEEEccCCC
Q psy6213 210 VWDLSIK------P---SLEYSINTIASVSRIKW------RPQRKFHLASCSLVVDS----------SVNVWDIRRPY 262 (330)
Q Consensus 210 i~d~~~~------~---~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~~~~~~----------~i~i~d~~~~~ 262 (330)
-|++... + .+.....-...+-.+.- .|+|++|++....+.|. .-++.|+...+
T Consensus 403 kWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 403 KWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 9998653 1 12222222223333332 67889877666533443 34677886654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.32 E-value=0.12 Score=49.31 Aligned_cols=220 Identities=10% Similarity=0.020 Sum_probs=116.3
Q ss_pred CcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecC-----CCEEEEEec-CCcEEEEEeecCceeeeee
Q psy6213 64 ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE-----SNWLISGSQ-DGTMRLFDIRCQESTKIFH 137 (330)
Q Consensus 64 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-----~~~l~~~~~-d~~i~i~d~~~~~~~~~~~ 137 (330)
+.+++.++ ++.+.+++++.. ....... ..-...|.|+++.|.. ..++++|.. |++++++++.+.+.+....
T Consensus 523 ~~~vvva~-g~~l~~fel~~~-~L~~~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~ 599 (1158)
T 3ei3_A 523 SSQVVVAV-GRALYYLQIHPQ-ELRQISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM 599 (1158)
T ss_dssp SSEEEEEE-TTEEEEEEEETT-EEEEEEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEE-CCEEEEEEeeCC-ceeeecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE
Confidence 34566664 577888877651 1122222 2235689999987622 478999996 9999999998766554433
Q ss_pred cC-CCCeEEEEEcC-CCCcEEEEEecCCcEEEEecCCC-cccee---eeccCCCCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 138 SN-TESVRDVEFNP-HSPYAFASVSENGTIQQWDVRRP-EKCFY---QFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 138 ~~-~~~v~~~~~~~-~~~~~~~~~~~dg~i~i~d~~~~-~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
-. .....++.+.. .+...+..|-.||.+..+.+... +.... .+-+ ..++.-..+...+..-+.+..+....+|
T Consensus 600 L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy 678 (1158)
T 3ei3_A 600 LGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIY 678 (1158)
T ss_dssp CCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEE
T ss_pred CCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEE
Confidence 21 22344444332 22234778888998876655421 12111 1222 3344444444344333333334455555
Q ss_pred eCCCCccccceeccccceEEEEEcCC--CCeEEEEeecccCCeEEEEEccCCCc-cceEeecCCCCeEEEEEecCCCEEE
Q psy6213 212 DLSIKPSLEYSINTIASVSRIKWRPQ--RKFHLASCSLVVDSSVNVWDIRRPYI-PLASFTEHKDVVSGLAWRGDPQLFI 288 (330)
Q Consensus 212 d~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~ 288 (330)
--+.. ..........--....|+.. ..-++ ..+ ++.++|..+.+... ....+. -...+..++++|+.+.++
T Consensus 679 ~~~~~-l~~s~l~~~~v~~~~~F~se~~~~g~v-~~~---~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~ 752 (1158)
T 3ei3_A 679 SSNHK-LVFSNVNLKEVNYMCPLNSDGYPDSLA-LAN---NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFG 752 (1158)
T ss_dssp ESSSS-EEEEEBSSSCCCEEEEECCSSSTTEEE-EEC---SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEE
T ss_pred EcCCc-eEEeccChHHhceEeccCcccCCCcEE-EEc---CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEE
Confidence 43321 11111111111233445432 12234 343 56699998865432 222332 346789999999888776
Q ss_pred EeecC
Q psy6213 289 ASSRV 293 (330)
Q Consensus 289 s~~~d 293 (330)
.+..+
T Consensus 753 v~~~~ 757 (1158)
T 3ei3_A 753 VLSSR 757 (1158)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.021 Score=45.82 Aligned_cols=225 Identities=7% Similarity=-0.012 Sum_probs=105.0
Q ss_pred CCcEEEEEcCC----CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec----C-----CcEEEEEeec
Q psy6213 63 EENHIATGATN----GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ----D-----GTMRLFDIRC 129 (330)
Q Consensus 63 ~~~~l~~~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d-----~~i~i~d~~~ 129 (330)
++.+++.|+.+ ..+.+||..+. +...+..+..... -.+++.. ++.+++.|+. + ..+.+||..+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~-~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNG-TWLRLADLQVPRS-GLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTT-EEEECCCCSSCCB-SCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCC-eEeECCCCCcccc-cceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 56677777642 35888888761 1222211111111 1122222 5677777765 2 4688888876
Q ss_pred Cceeee--eecCCCCeEEEEEcCCCCcEEEEEecC-----CcEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEE
Q psy6213 130 QESTKI--FHSNTESVRDVEFNPHSPYAFASVSEN-----GTIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLAT 201 (330)
Q Consensus 130 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~ 201 (330)
.+-... +.........+.+ ++. +++.|+.+ ..+.+||+.+..- .+..+......-..+.+ ++++++.
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~ 174 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGH-IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAV 174 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTE-EEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred CeEeECCCCCcCccccEEEEE--CCE-EEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEE
Confidence 543222 1111112222222 344 67776643 3588899876321 11111111111122222 5677777
Q ss_pred EecC-----CcEEEEeCCCCccccc-eec-cccceEEEEEcCCCCeEEEEeeccc---CCeEEEEEccCCCccceEeecC
Q psy6213 202 ASRD-----KTIKVWDLSIKPSLEY-SIN-TIASVSRIKWRPQRKFHLASCSLVV---DSSVNVWDIRRPYIPLASFTEH 271 (330)
Q Consensus 202 ~~~d-----g~i~i~d~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~~~~---~~~i~i~d~~~~~~~~~~~~~~ 271 (330)
|+.+ ..+.+||+.+.+-... ..+ .......+.+ +++ +++.++... -..+.+||+.+..- ..+...
T Consensus 175 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~ 249 (308)
T 1zgk_A 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVETETW--TFVAPM 249 (308)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTEE--EECCCC
T ss_pred eCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCCCcE--EECCCC
Confidence 7754 4588999876521111 111 1112223333 455 444443101 25789999887642 111111
Q ss_pred C--CCeEEEEEecCCCEEEEeecCC-----eEeeeecc
Q psy6213 272 K--DVVSGLAWRGDPQLFIASSRVS-----IIPRAKNI 302 (330)
Q Consensus 272 ~--~~v~~~~~~~~~~~l~s~~~dg-----~i~iw~~~ 302 (330)
. ..-.+++. -++++++.|+.++ .+.+|+..
T Consensus 250 p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 250 KHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp SSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCC
Confidence 1 11112222 2677788887654 34555543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.047 Score=43.85 Aligned_cols=179 Identities=7% Similarity=-0.019 Sum_probs=87.2
Q ss_pred CCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC----C-------CcEEEEECCCCCCCcee
Q psy6213 22 SRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT----N-------GAVVVWNLGQISRSKQE 90 (330)
Q Consensus 22 gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d-------g~i~iw~~~~~~~~~~~ 90 (330)
|...+.+||..+++... ........ ..-.+++. . ++.+++.|+. + ..+..||..+. +...+
T Consensus 11 GG~~~~~yd~~~~~W~~-~~~~~p~~----r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~W~~~ 82 (315)
T 4asc_A 11 SEEGAVAYDPAANECYC-ASLSSQVP----KNHVSLVT-K-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS-EWLGM 82 (315)
T ss_dssp ETTEEEEEETTTTEEEE-EECCCCSC----SSEEEEEC-T-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT-EEEEC
T ss_pred cCCceEEECCCCCeEec-CCCCCCCC----ccceEEEE-E-CCEEEEEcCcccCCCCCccccccceEEecCCCC-eEEEC
Confidence 34678899999877543 22111000 00122222 2 6777777773 1 12677887761 11221
Q ss_pred EEecccccceeEEEEEecCCCEEEEEecC--------CcEEEEEeecCceeee--eecCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 91 RVFNDHKRTVNKVSFHYVESNWLISGSQD--------GTMRLFDIRCQESTKI--FHSNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 91 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
..+..... -.+++.. ++.+++.|+.+ ..+.+||..+.+-... +....... +++. -++. +++.|+
T Consensus 83 ~~~p~~r~-~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~-iyv~GG 156 (315)
T 4asc_A 83 PPLPSPRC-LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDL-VYVIGG 156 (315)
T ss_dssp CCBSSCEE-SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTE-EEEECC
T ss_pred CCCCcchh-ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-ECCE-EEEEeC
Confidence 11111111 1122222 56777777743 4588899876643221 11111111 2222 3344 677777
Q ss_pred c-C-----CcEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEecCC-----cEEEEeCCCC
Q psy6213 161 E-N-----GTIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLATASRDK-----TIKVWDLSIK 216 (330)
Q Consensus 161 ~-d-----g~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~ 216 (330)
. + ..+.+||+.+..= .+..+......-..+.+ ++++++.|+.++ .+.+||+.+.
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence 5 2 4688999876321 11111111111122222 677888887654 4888998776
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.011 Score=44.32 Aligned_cols=133 Identities=7% Similarity=-0.048 Sum_probs=77.5
Q ss_pred cEEEEEecCCcEEEEecCCCcc-----ceeeeccC--CCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccc
Q psy6213 154 YAFASVSENGTIQQWDVRRPEK-----CFYQFTAH--SGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI 226 (330)
Q Consensus 154 ~~~~~~~~dg~i~i~d~~~~~~-----~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 226 (330)
++|+...+| +++.=.+..... ....+ +. -..+..++|+|+|.+.++ .+|.+.-.+..+...... ....
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W-~~s~ 79 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNW-MGRA 79 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCH-HHHC
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccc-cccc
Confidence 366777777 655554443221 01111 12 246779999999987666 678777777654322111 1112
Q ss_pred cc--------eEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc-----ceEeec-CCCCeEEEEEecCCCEEEEeec
Q psy6213 227 AS--------VSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP-----LASFTE-HKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 227 ~~--------v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~-----~~~~~~-~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
.. ...+.|.|+|.. .++ + ||.|+-++-.+.... -..+-. -=..+..+.+.|+|.+-+..
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~L-Yav-~---dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-- 152 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYL-YAV-S---KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-- 152 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCE-EEE-E---TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--
T ss_pred cEecccccccceEEEECCCCCE-EEe-C---CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--
Confidence 23 378999999985 555 6 799987775332210 011111 11467999999999876665
Q ss_pred CCeEee
Q psy6213 293 VSIIPR 298 (330)
Q Consensus 293 dg~i~i 298 (330)
|+.++-
T Consensus 153 dg~lyr 158 (236)
T 1tl2_A 153 GQQFYK 158 (236)
T ss_dssp TTEEEE
T ss_pred CCcEEe
Confidence 887543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.052 Score=43.37 Aligned_cols=198 Identities=8% Similarity=0.071 Sum_probs=103.4
Q ss_pred CCcEEEEEc--CCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC--------------CcEEEEE
Q psy6213 63 EENHIATGA--TNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD--------------GTMRLFD 126 (330)
Q Consensus 63 ~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d--------------~~i~i~d 126 (330)
++..++... .++.|...+.+. .....+... .+ --+++ +++.|+-+... ..|+..+
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~dg----~~~~~l~~~--~~--~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNIDG----SNIHKLSND--TA--MYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETTS----CSCEEEEEE--EE--EEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred eCCEEEEEeCCCCceEEEEcCCC----CCCEEccCC--ce--eeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 555555543 245555555543 222222221 22 34466 66666655442 3567777
Q ss_pred eecCceeeeeecCCCCeEEEEEcCCCCcEEEEE---ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe
Q psy6213 127 IRCQESTKIFHSNTESVRDVEFNPHSPYAFASV---SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS 203 (330)
Q Consensus 127 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 203 (330)
+...+.. .+... . ...|++++++++.+- ..+..|+..++. +.....+..+.. ..++|+++.|+-.+
T Consensus 95 ~dg~~~~-~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d--Gs~~~~lt~~~~----~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 95 RNGHGST-VLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRID--GEEKKKIKNHYL----FTCNTSDRYFYYNN 163 (302)
T ss_dssp TTSCCCE-EEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETT--SCCCEEEESSCC----CCSEEETTEEEEEC
T ss_pred CCCCcce-EeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECC--CCCeEEEeCCCc----eEeeEECCEEEEEe
Confidence 7655432 23211 1 236778888655544 233445555555 333444443332 45677788777665
Q ss_pred c-CCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 204 R-DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 204 ~-dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
. ...|...++........ .. .... ..+.|++.+|+.+... ....|..-++..... ..+.. ..+ ..|+|
T Consensus 164 ~g~~~Iy~~~l~g~~~~~l-~~--~~~~-~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~--~~Lt~--~~~--~~~~~ 232 (302)
T 3s25_A 164 PKNGQLYRYDTASQSEALF-YD--CNCY-KPVVLDDTNVYYMDVN-RDNAIVHVNINNPNP--VVLTE--ANI--EHYNV 232 (302)
T ss_dssp TTTCCEEEEETTTTEEEEE-EC--SCEE-EEEEEETTEEEEEEGG-GTTEEEEECSSSCCC--EECSC--SCE--EEEEE
T ss_pred CCCceEEEEECCCCCEEEE-eC--CCcc-ceeeecCCEEEEEEcC-CCcEEEEEECCCCCe--EEEeC--CCc--ceEEE
Confidence 4 67788888876643222 22 2222 2356999987776541 224677777765542 33322 223 23667
Q ss_pred CCCEEEEee
Q psy6213 283 DPQLFIASS 291 (330)
Q Consensus 283 ~~~~l~s~~ 291 (330)
++.+|.-++
T Consensus 233 ~g~~Iy~~~ 241 (302)
T 3s25_A 233 YGSLIFYQR 241 (302)
T ss_dssp ETTEEEEEE
T ss_pred CCCEEEEEE
Confidence 777776553
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.042 Score=52.75 Aligned_cols=233 Identities=13% Similarity=0.176 Sum_probs=135.5
Q ss_pred EeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCcee
Q psy6213 12 LKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQE 90 (330)
Q Consensus 12 ~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 90 (330)
.+|..+.++-- ..++.|+|+++.+....+..... |.-=.|- +.+.|+..+. ..|.-|++... ..+.
T Consensus 73 MnP~~~iiALrag~~lQiFnl~~k~klks~~~~e~--------VvfWkWi--s~~~l~lVT~-~aVyHW~~~~~--s~P~ 139 (1630)
T 1xi4_A 73 MNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDD--------VTFWKWI--SLNTVALVTD-NAVYHWSMEGE--SQPV 139 (1630)
T ss_pred cCCCcceEEEecCCeEEEeehHHhhhhcccccCCC--------ceEEEec--CCCeeEEEcC-CeEEEeccCCC--CccH
Confidence 45666665555 88899999988776665554322 3444665 4555655553 57999999652 3444
Q ss_pred EEeccc----ccceeEEEEEecCCCEEEEEe-------cCCcEEEEEeecCceeeeeecCCCCeEEEEEc--CCCCcEEE
Q psy6213 91 RVFNDH----KRTVNKVSFHYVESNWLISGS-------QDGTMRLFDIRCQESTKIFHSNTESVRDVEFN--PHSPYAFA 157 (330)
Q Consensus 91 ~~~~~~----~~~i~~i~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 157 (330)
+.+..| ...|..-..++ +.++++..| -.|.+.+|..+.+ ..+.+++|......+... +....+++
T Consensus 140 k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~ 217 (1630)
T 1xi4_A 140 KMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFC 217 (1630)
T ss_pred HHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEE
Confidence 444444 34566666666 566655433 3578899988743 344455665544443332 11222333
Q ss_pred EEec---CCcEEEEecCCC--cccee------eecc---CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccccee
Q psy6213 158 SVSE---NGTIQQWDVRRP--EKCFY------QFTA---HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI 223 (330)
Q Consensus 158 ~~~~---dg~i~i~d~~~~--~~~~~------~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 223 (330)
.+.. .+.+++-++..+ +.+.. .+.. -.+-..++..++....+...+.-|.+.+||+.++..+....
T Consensus 218 f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred EEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 3322 368899888653 11111 1111 12334567777777788888999999999999997655544
Q ss_pred ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 224 NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 224 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
-...+|...+-++...-+++.. ..|.|.-..+....
T Consensus 298 is~~~iF~~~~~~~~~g~~~vn---r~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 298 ISGETIFVTAPHEATAGIIGVN---RKGQVLSVCVEEEN 333 (1630)
T ss_pred ccCCceEEeccCCCCCceEEEc---CCceEEEEEEccch
Confidence 4455555554444433333333 36666666555443
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=97.09 E-value=0.072 Score=42.09 Aligned_cols=220 Identities=13% Similarity=0.066 Sum_probs=121.2
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
|..++... ...++. . ||.|..|-.....+... -......|..++.. ....++. . ||.|+.|-.+..-.+
T Consensus 26 i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~---p~~~~~~i~~ia~G--~~hs~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 26 VDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTM---PAATQSGVDAIAAG--NYHSLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp CCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSC---CGGGGSCCCEEEEC--SSEEEEE-E-TTEEEEEECCTTSTT
T ss_pred CcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCC---CccCCCCEEEEEeC--CCEEEEE-E-CCEEEEeeCCCCCCC
Confidence 45555543 233333 5 89999998765322111 11223467777754 3344444 4 899999986643222
Q ss_pred eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeC
Q psy6213 134 KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 134 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 213 (330)
..-..-...|..++..... .+.-. +|.|+.|-....++.-.. ......|..++...+...+ -. ||.+..|-.
T Consensus 95 g~P~~~~~~v~~ia~G~~h---s~al~-~G~v~~wG~n~~gqlg~~-~~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~ 166 (282)
T 3qhy_B 95 TVPAEARSGVDAIAAGAWA---SYALK-DGKVIAWGDDSDGQTTVP-AEAQSGVTALDGGVYTALA--VK-NGGVIAWGD 166 (282)
T ss_dssp CCCGGGSSSEEEEEEETTE---EEEEE-TTEEEEEECCTTSTTSCC-GGGGSSEEEEEECSSEEEE--EE-TTEEEEEEC
T ss_pred CCCcccCCCeEEEECcCCE---EEEEe-CCeEEEecCCCCCcCCCC-ccCCCCeEEEEcccCEEEE--EE-CCEEEEecC
Confidence 2111123467777765543 33334 899999987654432211 1123457777665433222 33 799999987
Q ss_pred CCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC
Q psy6213 214 SIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
....++.........+..++...... ++. . +|.++.|=.....+ +-........|..++...+. .++ -. |
T Consensus 167 n~~gqlg~p~~~~~~v~~i~~G~~hs--~al-~---~G~v~~wG~n~~gq-lg~p~~~~~~v~~i~~G~~h-~~a-l~-~ 236 (282)
T 3qhy_B 167 NYFGQTTVPAEAQSGVDDVAGGIFHS--LAL-K---DGKVIAWGDNRYKQ-TTVPTEALSGVSAIASGEWY-SLA-LK-N 236 (282)
T ss_dssp CTTSTTSCCGGGGSSEEEEEECSSEE--EEE-E---TTEEEEEECCTTST-TCCCGGGGSSCCEEEECSSC-EEE-EE-T
T ss_pred CCCCCCCCceecCCCeEEEEecCCEE--EEE-E---CCeEEEEECCCCCC-CCCCcccCCCceEEEcCCCE-EEE-EE-C
Confidence 65433332222345677777655433 444 5 99999997654433 21111222457777765433 333 33 9
Q ss_pred CeEeeeecc
Q psy6213 294 SIIPRAKNI 302 (330)
Q Consensus 294 g~i~iw~~~ 302 (330)
|.|+.|-..
T Consensus 237 g~v~~wG~n 245 (282)
T 3qhy_B 237 GKVIAWGSS 245 (282)
T ss_dssp TEEEEESTT
T ss_pred CEEEEecCC
Confidence 999999644
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.081 Score=42.51 Aligned_cols=184 Identities=5% Similarity=0.033 Sum_probs=86.7
Q ss_pred eeecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC----CC-------cEEEEECCCCCC
Q psy6213 18 LAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT----NG-------AVVVWNLGQISR 86 (330)
Q Consensus 18 ~~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg-------~i~iw~~~~~~~ 86 (330)
+++.|...+..||..+++... ......... .-.+++ .. ++.+++.|+. ++ .+..||..+. .
T Consensus 18 i~~~GG~~~~~yd~~~~~W~~-~~~~~~~~r----~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-~ 89 (318)
T 2woz_A 18 ILLVNDTAAVAYDPMENECYL-TALAEQIPR----NHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS-E 89 (318)
T ss_dssp EEEECSSEEEEEETTTTEEEE-EEECTTSCS----SEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTT-E
T ss_pred hhhccccceEEECCCCCceec-ccCCccCCc----cceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCC-c
Confidence 344443348899998877544 221110000 012222 22 6778888873 12 1677887651 1
Q ss_pred CceeEEecccccceeEEEEEecCCCEEEEEecC-------CcEEEEEeecCceeeeeecCCCCe-EEEEEcCCCCcEEEE
Q psy6213 87 SKQERVFNDHKRTVNKVSFHYVESNWLISGSQD-------GTMRLFDIRCQESTKIFHSNTESV-RDVEFNPHSPYAFAS 158 (330)
Q Consensus 87 ~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~ 158 (330)
......+..... -.+++.. ++.+++.|+.+ ..+.+||..+.+-...-....... .+++. .++. +++.
T Consensus 90 W~~~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~-iyv~ 164 (318)
T 2woz_A 90 WVGLPPLPSARC-LFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGM-IYCL 164 (318)
T ss_dssp EEECSCBSSCBC-SCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTE-EEEE
T ss_pred EEECCCCCcccc-ccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCE-EEEE
Confidence 222111111111 1222222 67777888764 247788877654332211111111 11222 3444 6777
Q ss_pred Eec------CCcEEEEecCCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEecC-----CcEEEEeCCCC
Q psy6213 159 VSE------NGTIQQWDVRRPEK-CFYQFTAHSGPIFACDWHPEHAWLATASRD-----KTIKVWDLSIK 216 (330)
Q Consensus 159 ~~~------dg~i~i~d~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 216 (330)
|+. ...+.+||+.+..= .+..+...... .+++.. ++++++.|+.+ ..+.+||+.+.
T Consensus 165 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 165 GGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp CCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred cCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCccceEEEEECCCC
Confidence 764 23588999886321 11111111111 122222 56777777754 34778898765
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.11 Score=47.01 Aligned_cols=199 Identities=10% Similarity=0.046 Sum_probs=99.3
Q ss_pred eCCCe-eecC-C----CeEEEEEcCCcceeeee-ceeeccccccccceeeeeecccCCcEEEEEcCCC------cEEEEE
Q psy6213 14 ADNGL-AQPS-R----NVFKIFLIKDTEFVETH-NLRVGKNINLNFSCNDVAWSCIEENHIATGATNG------AVVVWN 80 (330)
Q Consensus 14 ~~~~~-~~~g-d----~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~iw~ 80 (330)
-++.+ +.+| + ..+.+||..+++..... ....+........-..+.+.. ++.+++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 34555 5555 3 46788888887655433 211000000001113333332 566777776543 477888
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC--cEEEEEeecCceeeee-----ecCCCCeEEEEEcCCCC
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG--TMRLFDIRCQESTKIF-----HSNTESVRDVEFNPHSP 153 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~ 153 (330)
..+. .......+..... -.+.+... ++.+++.|+.++ .+.+||..+.+-...- ........++.+..+..
T Consensus 475 ~~t~-~W~~~~~~p~~R~-~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 475 MKTR-EWSMIKSLSHTRF-RHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp TTTT-EEEECCCCSBCCB-SCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred CCCC-cEEECCCCCCCcc-cceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence 8761 1222211111111 11222222 678888887654 6899998766432221 11112223355565534
Q ss_pred cEEEEEec--C-----CcEEEEecCCCcc--c--eeeecc---CCCCeEEEEEcCCCCEEEEEecC--------CcEEEE
Q psy6213 154 YAFASVSE--N-----GTIQQWDVRRPEK--C--FYQFTA---HSGPIFACDWHPEHAWLATASRD--------KTIKVW 211 (330)
Q Consensus 154 ~~~~~~~~--d-----g~i~i~d~~~~~~--~--~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~ 211 (330)
.+++.|+. + ..+.+||+.+..- . ...+.. ....-.++....++++++.|+.+ ..+.+|
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 47777765 2 3588999887431 0 111111 11111223333347778888743 458999
Q ss_pred eCCCC
Q psy6213 212 DLSIK 216 (330)
Q Consensus 212 d~~~~ 216 (330)
|+.+.
T Consensus 632 d~~t~ 636 (695)
T 2zwa_A 632 DPLSE 636 (695)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 98876
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.092 Score=42.11 Aligned_cols=213 Identities=9% Similarity=-0.022 Sum_probs=96.7
Q ss_pred cEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec----C-------CcEEEEEeecCcee
Q psy6213 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ----D-------GTMRLFDIRCQEST 133 (330)
Q Consensus 65 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d-------~~i~i~d~~~~~~~ 133 (330)
.+++.|+ ..+..||..+.. ... ..+............. .++.+++.|+. + ..+..||..+.+-.
T Consensus 6 ~l~~~GG--~~~~~yd~~~~~-W~~-~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 6 LIFMISE--EGAVAYDPAANE-CYC-ASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEEET--TEEEEEETTTTE-EEE-EECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred EEEEEcC--CceEEECCCCCe-Eec-CCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence 3455565 568999988721 221 2222111112222222 26788888874 1 12777887765432
Q ss_pred eeeecCCCCe--EEEEEcCCCCcEEEEEecC--------CcEEEEecCCCc-cceeeeccCCCCeEEEEEcCCCCEEEEE
Q psy6213 134 KIFHSNTESV--RDVEFNPHSPYAFASVSEN--------GTIQQWDVRRPE-KCFYQFTAHSGPIFACDWHPEHAWLATA 202 (330)
Q Consensus 134 ~~~~~~~~~v--~~~~~~~~~~~~~~~~~~d--------g~i~i~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 202 (330)
.. .....+- .+++.. ++ .+++.|+.+ ..+.+||..+.. ..+..+......- +++. -++++++.|
T Consensus 81 ~~-~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~G 155 (315)
T 4asc_A 81 GM-PPLPSPRCLFGLGEA-LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDLVYVIG 155 (315)
T ss_dssp EC-CCBSSCEESCEEEEE-TT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEEC
T ss_pred EC-CCCCcchhceeEEEE-CC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEE-ECCEEEEEe
Confidence 21 1111111 112222 33 367777642 358889987632 1111111111111 2222 356777777
Q ss_pred ec-C-----CcEEEEeCCCCccccc-eec-cccceEEEEEcCCCCeEEEEeecccC---CeEEEEEccCCCccceEeecC
Q psy6213 203 SR-D-----KTIKVWDLSIKPSLEY-SIN-TIASVSRIKWRPQRKFHLASCSLVVD---SSVNVWDIRRPYIPLASFTEH 271 (330)
Q Consensus 203 ~~-d-----g~i~i~d~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~ 271 (330)
+. + ..+.+||..+.+-... ..+ .......+.+ +++.+++++. ..+ ..+.+||+.+..- ..+...
T Consensus 156 G~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W--~~~~~~ 230 (315)
T 4asc_A 156 GKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGV-TDTGLTSSAEVYSITDNKW--APFEAF 230 (315)
T ss_dssp CBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEE-CSSSEEEEEEEEETTTTEE--EEECCC
T ss_pred CCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEecc-CCCCccceEEEEECCCCeE--EECCCC
Confidence 76 2 4589999876521111 111 1111222222 4554444443 111 2688899877642 222111
Q ss_pred C--CCeEEEEEecCCCEEEEeecC
Q psy6213 272 K--DVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 272 ~--~~v~~~~~~~~~~~l~s~~~d 293 (330)
. ..-.+++. -++++++.|+.+
T Consensus 231 p~~r~~~~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 231 PQERSSLSLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp SSCCBSCEEEE-ETTEEEEEEEEE
T ss_pred CCcccceeEEE-ECCEEEEECCcc
Confidence 1 11112222 266777777764
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.031 Score=45.28 Aligned_cols=193 Identities=10% Similarity=0.050 Sum_probs=98.7
Q ss_pred eCCCeeecC-CCeEEEEEcCCcceeeeeceee-ccccccccceeeeeecccCCcEEEEE-cCCCcEEEEECCCCCCCcee
Q psy6213 14 ADNGLAQPS-RNVFKIFLIKDTEFVETHNLRV-GKNINLNFSCNDVAWSCIEENHIATG-ATNGAVVVWNLGQISRSKQE 90 (330)
Q Consensus 14 ~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 90 (330)
.++..+++. ||.|.-+|.++|+..-.++... ....... .-.. +.++..++.. ..||.|..++..+ +...
T Consensus 9 ~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~----~~~~-~~~~~~~vv~p~~dG~l~a~~~~~---G~~~ 80 (339)
T 2be1_A 9 LSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ----EPSR-LETYETLIIEPFGDGNIYYFNAHQ---GLQK 80 (339)
T ss_dssp EEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC----CSCT-TTSSEEEEECCSTTTEEEEEETTT---EEEE
T ss_pred eCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec----CCcc-ccCCcEEEEEECCCCEEEEEECCC---CcEE
Confidence 344445555 9999999999988766554431 0111000 0000 1133444443 5899999999876 3222
Q ss_pred EEecc----cccceeE---EEE-Ee---cCCCEEEEEecCCcEEEEEeecCceeeeeecCCC--C-----eEEEEEc---
Q psy6213 91 RVFND----HKRTVNK---VSF-HY---VESNWLISGSQDGTMRLFDIRCQESTKIFHSNTE--S-----VRDVEFN--- 149 (330)
Q Consensus 91 ~~~~~----~~~~i~~---i~~-~~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~-----v~~~~~~--- 149 (330)
..+.. ...++.. ... .+ ..+..+++|+.+|.+...|+++|+.+..+..... . ..|....
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~ 160 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIK 160 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------
T ss_pred eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccc
Confidence 22211 1111211 000 00 0467789999999999999999999988864321 0 1111111
Q ss_pred --CCCCcEEEEEecCCcEEEEecCCCccceeee-----ccCCCC--e-EEEEEcCCCCEEEEEecCCcEEEEeCCCCccc
Q psy6213 150 --PHSPYAFASVSENGTIQQWDVRRPEKCFYQF-----TAHSGP--I-FACDWHPEHAWLATASRDKTIKVWDLSIKPSL 219 (330)
Q Consensus 150 --~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~--i-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 219 (330)
..+. .++.+..+..+.+.+ ++ ++ .-.+ ...... + .+-..+.++.+ +.++.||.|.-+|..++...
T Consensus 161 ~d~~~~-~v~ig~~~y~v~~~~-~s-G~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 161 LQECEN-MIVIGKTIFELGIHS-YD-GA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp ----CC-EEEEEEEEEECEECC-TT-SC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred cccCCC-eEEEecceEEEEEEC-CC-CC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 1123 466677677777766 33 22 1111 000000 0 00001124555 45788899999998877543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.078 Score=43.40 Aligned_cols=97 Identities=11% Similarity=0.115 Sum_probs=47.2
Q ss_pred CCcEEEEEcCC-CcEEEEECCC-CCCCceeEEecccccceeEEEEEecCCCEEEEEec-C---------CcEEEEEeecC
Q psy6213 63 EENHIATGATN-GAVVVWNLGQ-ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ-D---------GTMRLFDIRCQ 130 (330)
Q Consensus 63 ~~~~l~~~~~d-g~i~iw~~~~-~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-d---------~~i~i~d~~~~ 130 (330)
++.+++.|+.+ ..+.+||... ......+..+......-.+++.. ++.+++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56666777643 4688888863 12233332222111111223333 5677777776 2 46888998766
Q ss_pred ceeeeeecC-CCCeEEEEEcCCCCcEEEEEecC
Q psy6213 131 ESTKIFHSN-TESVRDVEFNPHSPYAFASVSEN 162 (330)
Q Consensus 131 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d 162 (330)
+-...-... .......+...++. +++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~-iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGK-AYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTE-EEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCE-EEEEeCcC
Confidence 433221111 11111111223444 77888754
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.14 Score=40.79 Aligned_cols=202 Identities=7% Similarity=0.023 Sum_probs=106.9
Q ss_pred eecccCCcEEEEEcCC--------------CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEe----cC
Q psy6213 58 AWSCIEENHIATGATN--------------GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGS----QD 119 (330)
Q Consensus 58 ~~~~~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~----~d 119 (330)
-+++ +++.|+-.... ..|+..+++. ... ..+.. .. +..|++ +++.|+-.. ..
T Consensus 59 ~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg---~~~-~~l~~--~~--~~~~s~-~g~~Iy~~~~~~~~~ 128 (302)
T 3s25_A 59 YINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG---HGS-TVLDP--DP--CIYASL-IGNYIYYLHYDTQTA 128 (302)
T ss_dssp EEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTS---CCC-EEEEC--SC--EEEEEE-ETTEEEEEEESSSSC
T ss_pred eEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCC---Ccc-eEeec--CC--ccEEEE-eCCEEEEEeecCCCC
Confidence 3466 67777665442 3566666665 222 22221 11 225676 566666554 23
Q ss_pred CcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEE
Q psy6213 120 GTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWL 199 (330)
Q Consensus 120 ~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 199 (330)
..|+..++... ....+..+.. .+++++++.++.+......|+..++.... ....+. +... ..+.|++.+|
T Consensus 129 ~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~-~~~l~~---~~~~-~~~~P~g~~i 198 (302)
T 3s25_A 129 TSLYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS-EALFYD---CNCY-KPVVLDDTNV 198 (302)
T ss_dssp EEEEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE-EEEEEC---SCEE-EEEEEETTEE
T ss_pred ceEEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC-EEEEeC---CCcc-ceeeecCCEE
Confidence 45555565533 3344443322 45678888766565446778888877532 222222 2222 3456888888
Q ss_pred EEEecC--CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEE
Q psy6213 200 ATASRD--KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSG 277 (330)
Q Consensus 200 ~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~ 277 (330)
+-...+ ..|..-++........ . ...+ ..|+|++..|+.+... ..+.|..-++..... +.+... .+..
T Consensus 199 y~t~~~~~~~I~~~~ldG~~~~~L-t--~~~~--~~~~~~g~~Iy~~~~~-~~~~i~~~~~DG~~r--~~l~~~--~~~~ 268 (302)
T 3s25_A 199 YYMDVNRDNAIVHVNINNPNPVVL-T--EANI--EHYNVYGSLIFYQRGG-DNPALCVVKNDGTGF--KELAKG--EFCN 268 (302)
T ss_dssp EEEEGGGTTEEEEECSSSCCCEEC-S--CSCE--EEEEEETTEEEEEECS-SSCEEEEEETTSCCC--EEEEES--CEEE
T ss_pred EEEEcCCCcEEEEEECCCCCeEEE-e--CCCc--ceEEECCCEEEEEECC-CCcEEEEEECCCCcc--EEeeCC--ccce
Confidence 776644 3566666665533222 1 1223 3488889987665321 356777777765442 222221 2333
Q ss_pred EEEecCCCEEEEee
Q psy6213 278 LAWRGDPQLFIASS 291 (330)
Q Consensus 278 ~~~~~~~~~l~s~~ 291 (330)
+++.+.+|+-..
T Consensus 269 --i~i~~d~Iy~td 280 (302)
T 3s25_A 269 --INVTSQYVYFTD 280 (302)
T ss_dssp --EEECSSEEEEEE
T ss_pred --EEEeCCEEEEEE
Confidence 445566666554
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.23 Score=42.20 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=58.4
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecc------cccceeEEEEEec---CCCEEEEEec-------
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFND------HKRTVNKVSFHYV---ESNWLISGSQ------- 118 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~i~~i~~~~~---~~~~l~~~~~------- 118 (330)
..++|.| +++++++-...+.|.+++... .....+..+.. .......|+|+|+ ++.+.++-+.
T Consensus 30 ~~~a~~p-dG~l~V~e~~gg~I~~~~~~~-g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 30 HALLWGP-DNQIWLTERATGKILRVNPES-GSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp EEEEECT-TSCEEEEETTTCEEEEECTTT-CCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred eEEEEcC-CCcEEEEEcCCCEEEEEECCC-CcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 7899999 888777655445788887543 11222222221 2456779999983 3444444332
Q ss_pred -----CCcEEEEEeecC-------ceee-eeec-CCCCeEEEEEcCCCCcEEEEEe
Q psy6213 119 -----DGTMRLFDIRCQ-------ESTK-IFHS-NTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 119 -----d~~i~i~d~~~~-------~~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
...|.-++.... +.+. .+.. .......++|.|+|. ++++.+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 235666665432 1111 1211 123478899999997 566544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.24 Score=42.12 Aligned_cols=106 Identities=8% Similarity=0.136 Sum_probs=61.7
Q ss_pred cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee--eeec------CCCCeEEEEEcCC---CCcEEEEEec-----
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK--IFHS------NTESVRDVEFNPH---SPYAFASVSE----- 161 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~------~~~~v~~~~~~~~---~~~~~~~~~~----- 161 (330)
.....++|.| +++++++-...+.|++++..+++... .+.. .......++|+|+ +..++++-+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567899998 78866665433478888765444322 2211 2356779999996 5545555432
Q ss_pred -------CCcEEEEecCCCc------ccee-eecc-CCCCeEEEEEcCCCCEEEEEec
Q psy6213 162 -------NGTIQQWDVRRPE------KCFY-QFTA-HSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 162 -------dg~i~i~d~~~~~------~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
...|..++..... +.+. .+.. .......|+|.|+|.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666654311 1111 1221 1234689999999987777553
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.37 Score=43.96 Aligned_cols=275 Identities=9% Similarity=0.093 Sum_probs=147.7
Q ss_pred ccceEEEEeeCCCeeecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCC
Q psy6213 5 SPVHKHGLKADNGLAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
..|.++...++|.+.++..+-+..++..+++.... ....... .....|.++...+ ++..|..|+. +-+..++..+
T Consensus 146 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~-~~~~~~~-~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~- 220 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFEGI-PLPVHSS-QSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPST- 220 (758)
T ss_dssp SCEEEEEECTTCCEEEEETTEEEEEETTTTEEEEE-CCCCCTT-CSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTT-
T ss_pred CeEEEEEEcCCCCEEEEeCCCHhhCccCCCceEEe-cCCCccc-cccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCC-
Confidence 35777777777887333344577788776654321 1111100 0112256777665 5665555664 4588888765
Q ss_pred CCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee-------cCCCCeEEEEEcCCCCcEEE
Q psy6213 85 SRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH-------SNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~ 157 (330)
.+...........|.++...+ ++. |..|+.+ -+.+++..+++...... .....|.++....++. +-
T Consensus 221 --~~~~~~~~l~~~~i~~i~~d~-~g~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lW 293 (758)
T 3ott_A 221 --GQIKQTEAFHNNSIKSLALDG-NGD-LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN--IW 293 (758)
T ss_dssp --TEEEEEEEEEEEEEEEEEECT-TCC-EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC--EE
T ss_pred --CeEEeccCCCCCeEEEEEEcC-CCC-EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC--EE
Confidence 222111111234577777653 444 5555544 58888876554322111 1234588888888776 55
Q ss_pred EEecCCcEEEEecCCCccceeeec-----cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc--cccee-------
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQFT-----AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS--LEYSI------- 223 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~------- 223 (330)
.|+..| +.++........ .... .....|.++.-.++|.+. .|+.+| +..++..++.. .....
T Consensus 294 iGT~~G-l~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~ 369 (758)
T 3ott_A 294 LGTDYG-ISLSRYNSALQF-IPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG-LIRFTDPAGERHDAIWYRMGDKTYP 369 (758)
T ss_dssp EEESSS-EEEECCCC-CEE-EEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE-EEEESCTTSSCCCCEEECTTCSSSC
T ss_pred EEeCCc-ccccccCCceeE-EecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc-ceeecccccccceeEEeccCCcCCC
Confidence 666666 555443221111 1110 123468888888777744 455555 66676554311 10110
Q ss_pred ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec-----CCCCeEEEEEecCCCEEEEeecCCeEee
Q psy6213 224 NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE-----HKDVVSGLAWRGDPQLFIASSRVSIIPR 298 (330)
Q Consensus 224 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~dg~i~i 298 (330)
-....|.++.-.++|.. .++ + ++-|..||..+++........ ....|.++.-.+++.+. .|+..+-|.+
T Consensus 370 l~~~~v~~i~~d~~g~l-Wig-t---~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igT~~~Gl~~ 443 (758)
T 3ott_A 370 LSHNRIRHIYEDKEQQL-WIA-T---DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLW-ISTCLGGIFV 443 (758)
T ss_dssp CSCSCEEEEEECTTSCE-EEE-E---TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEE-EEESSSCEEE
T ss_pred CCCCceEEEEECCCCCE-EEE-e---CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEE-EEECCCceEE
Confidence 11245888888888874 333 3 457999998776431111111 12458888877777644 4665555666
Q ss_pred eec
Q psy6213 299 AKN 301 (330)
Q Consensus 299 w~~ 301 (330)
++.
T Consensus 444 ~~~ 446 (758)
T 3ott_A 444 VDK 446 (758)
T ss_dssp EEH
T ss_pred Ecc
Confidence 653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.21 Score=40.07 Aligned_cols=212 Identities=9% Similarity=0.089 Sum_probs=94.4
Q ss_pred cEEEEEcCCCcEEEEECCCCCCCceeEEecc-cccceeEEEEEecCCCEEEEEec----CC-------cEEEEEeecCce
Q psy6213 65 NHIATGATNGAVVVWNLGQISRSKQERVFND-HKRTVNKVSFHYVESNWLISGSQ----DG-------TMRLFDIRCQES 132 (330)
Q Consensus 65 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~----d~-------~i~i~d~~~~~~ 132 (330)
.+++.|+. .+..||..+.. ... ..... ....-.+++. .++.+++.|+. ++ .+..||..+.+-
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~-W~~-~~~~~~~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 90 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENE-CYL-TALAEQIPRNHSSIVT--QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW 90 (318)
T ss_dssp EEEEECSS--EEEEEETTTTE-EEE-EEECTTSCSSEEEEEC--SSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred hhhhcccc--ceEEECCCCCc-eec-ccCCccCCccceEEEE--ECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence 44555553 48889987621 211 11111 1111222322 26778888873 12 167778766543
Q ss_pred eee--eecCCCCeEEEEEcCCCCcEEEEEecC-------CcEEEEecCCCccceeeeccCCCCe--EEEEEcCCCCEEEE
Q psy6213 133 TKI--FHSNTESVRDVEFNPHSPYAFASVSEN-------GTIQQWDVRRPEKCFYQFTAHSGPI--FACDWHPEHAWLAT 201 (330)
Q Consensus 133 ~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~ 201 (330)
... +....... +++.. ++. +++.|+.+ ..+.+||+.+.. -..+.....+. .+++. .++++++.
T Consensus 91 ~~~~~~p~~r~~~-~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~ 164 (318)
T 2woz_A 91 VGLPPLPSARCLF-GLGEV-DDK-IYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCL 164 (318)
T ss_dssp EECSCBSSCBCSC-EEEEE-TTE-EEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEE
T ss_pred EECCCCCcccccc-ceEEE-CCE-EEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE-ECCEEEEE
Confidence 221 11111111 22222 343 77777754 247788887632 11111111111 11222 36677777
Q ss_pred Eec------CCcEEEEeCCCCccccc-eecc-ccceEEEEEcCCCCeEEEEeecccC---CeEEEEEccCCCcc-ceEee
Q psy6213 202 ASR------DKTIKVWDLSIKPSLEY-SINT-IASVSRIKWRPQRKFHLASCSLVVD---SSVNVWDIRRPYIP-LASFT 269 (330)
Q Consensus 202 ~~~------dg~i~i~d~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~~~~~~~~~---~~i~i~d~~~~~~~-~~~~~ 269 (330)
|+. -..+.+||+.+.+-... ..+. ......+.+ +++.+++++. ..+ ..+.+||+.+..-. +..+.
T Consensus 165 GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p 241 (318)
T 2woz_A 165 GGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGV-TEDGLSASVEAFDLKTNKWEVMTEFP 241 (318)
T ss_dssp CCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEE-ETTEEEEEEEEEETTTCCEEECCCCS
T ss_pred cCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCc-CCCCccceEEEEECCCCeEEECCCCC
Confidence 764 23589999877621111 1111 111222222 4454444443 111 45778998776421 11111
Q ss_pred cCCCCeEEEEEecCCCEEEEeecC
Q psy6213 270 EHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 270 ~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
.....- +++. -++++++.|+.+
T Consensus 242 ~~r~~~-~~~~-~~~~i~v~GG~~ 263 (318)
T 2woz_A 242 QERSSI-SLVS-LAGSLYAIGGFA 263 (318)
T ss_dssp SCCBSC-EEEE-ETTEEEEECCBC
T ss_pred Ccccce-EEEE-ECCEEEEECCee
Confidence 111111 2222 266777777764
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.33 Score=39.50 Aligned_cols=229 Identities=10% Similarity=0.049 Sum_probs=120.8
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEe----cccccceeEEEEEec---CCCEEEEEe--cCCcEEEE
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVF----NDHKRTVNKVSFHYV---ESNWLISGS--QDGTMRLF 125 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~i~~i~~~~~---~~~~l~~~~--~d~~i~i~ 125 (330)
..++|.| ++.++++-...|.|++++.... ....+..+ .........|+++|+ ++.+.++-+ .++.|.-|
T Consensus 35 ~~ia~~p-dG~llVter~~G~I~~v~~~~g-~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 35 WGLAPLP-GGDLLVSSRDEATITRVDAKTG-RKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp EEEEECT-TSCEEEEETTTCEEEEECTTTC-CEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred eEEEEcC-CCcEEEEEecCCEEEEEECCCC-cEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 7899999 8887777665899999876541 11222222 123456789999983 344434322 34556666
Q ss_pred EeecCc--------eeee---eec-CCCCeEEEEEcCCCCcEEEEEec-------------CCcEEEEecCCCc---c--
Q psy6213 126 DIRCQE--------STKI---FHS-NTESVRDVEFNPHSPYAFASVSE-------------NGTIQQWDVRRPE---K-- 175 (330)
Q Consensus 126 d~~~~~--------~~~~---~~~-~~~~v~~~~~~~~~~~~~~~~~~-------------dg~i~i~d~~~~~---~-- 175 (330)
.+..+. .... +.. ....-..++|.|++. ++++.+. .|.|.-.+....- .
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf 191 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF 191 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence 655421 1111 211 112345699999997 5666432 3555555554210 0
Q ss_pred -ceeee-ccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCcc-----------------ccceec-cccceEEEEE
Q psy6213 176 -CFYQF-TAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPS-----------------LEYSIN-TIASVSRIKW 234 (330)
Q Consensus 176 -~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-----------------~~~~~~-~~~~v~~~~~ 234 (330)
....+ .+|. ....++|+|+|.+.++-. .|+.=.|--+..+.. ...... +......++|
T Consensus 192 ~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~ 270 (347)
T 3das_A 192 PGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAY 270 (347)
T ss_dssp TTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEE
T ss_pred CCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEE
Confidence 01111 2343 356899999887655442 232222222222211 011111 1135567777
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCCCc---cceEeecCCCCeEEEEEecCCCEEEEee
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRPYI---PLASFTEHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
.. +. ++.+.- ..+.|....+..... +...+.+....+.+++..|||.+.++..
T Consensus 271 ~~-g~-~~~~~l--~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 271 AE-GS-VWMAGL--RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ET-TE-EEEEES--TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred Ec-Cc-eeeccc--cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 64 44 344443 366676667765421 1222334446899999999998766644
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.56 Score=40.52 Aligned_cols=229 Identities=11% Similarity=0.141 Sum_probs=129.7
Q ss_pred EEEEEcCCCcEEEEECCCCCCCceeEEecccc-------------------------cceeEEEEEec----CCCEEEEE
Q psy6213 66 HIATGATNGAVVVWNLGQISRSKQERVFNDHK-------------------------RTVNKVSFHYV----ESNWLISG 116 (330)
Q Consensus 66 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------------------------~~i~~i~~~~~----~~~~l~~~ 116 (330)
.+.+|+..|.++++-+.+ ++.+..+.... +......+|.. ++++|+.-
T Consensus 72 ~f~SgG~sG~v~v~G~PS---mR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiN 148 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPS---MRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFIN 148 (638)
T ss_dssp EEEECGGGCCEEEEEETT---TEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEE
T ss_pred EEeecCcCceEEEEecCC---cceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEe
Confidence 477889999999999877 55554432110 11111122221 34566665
Q ss_pred e-cCCcEEEEEeecCceeeeeec-CCCCeEEEEEc--CCCCcEEEEEec-------CCcE---------EE---EecCCC
Q psy6213 117 S-QDGTMRLFDIRCQESTKIFHS-NTESVRDVEFN--PHSPYAFASVSE-------NGTI---------QQ---WDVRRP 173 (330)
Q Consensus 117 ~-~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~~~~~~~~-------dg~i---------~i---~d~~~~ 173 (330)
. .+..|-..+++..++-+.++. ....+..++|- |+..|+ +.+++ ||.. .+ .|..+.
T Consensus 149 dkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv-~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm 227 (638)
T 3sbq_A 149 DKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYV-FANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETM 227 (638)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEE-EEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTC
T ss_pred cCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEE-EecceeeccCCCCCcccccCChhhceEEEEEcCCcc
Confidence 5 456777788887777665553 44567888886 677764 44432 2221 01 111110
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCEEEEEecCC---------------cEEEEeC-------------------------
Q psy6213 174 EKCFYQFTAHSGPIFACDWHPEHAWLATASRDK---------------TIKVWDL------------------------- 213 (330)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~i~d~------------------------- 213 (330)
.-..+.. -.+........+++++.++.+.+. .+.++|+
T Consensus 228 ~v~~Qv~--v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~ 305 (638)
T 3sbq_A 228 EMAFQVI--VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG 305 (638)
T ss_dssp SEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred EEEEEEE--cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence 0000000 012233445566777777666432 1444443
Q ss_pred CC----CccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC-----------ccceEeecCCCCeEEE
Q psy6213 214 SI----KPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY-----------IPLASFTEHKDVVSGL 278 (330)
Q Consensus 214 ~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~ 278 (330)
+. ........+.......+..+|||+++++++. .+.++.++|+++.. ..+.....-.......
T Consensus 306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK--LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt 383 (638)
T 3sbq_A 306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK--LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHT 383 (638)
T ss_dssp SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEE
T ss_pred ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC--CCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEE
Confidence 22 1122233334455667899999999888888 89999999998421 1111111223467889
Q ss_pred EEecCCCEEEEeecCCeEeeeecc
Q psy6213 279 AWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 279 ~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+|.++|....|.--|..|.-|+..
T Consensus 384 ~Fd~~G~aYTtlfidSqvvkWni~ 407 (638)
T 3sbq_A 384 TFDGRGNAYTTLFIDSQVVKWNME 407 (638)
T ss_dssp EECSSSEEEEEETTTTEEEEEEHH
T ss_pred EECCCCceEeeeeecceEEEEecc
Confidence 999999655666689999999754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=1.8 Score=39.05 Aligned_cols=151 Identities=5% Similarity=0.036 Sum_probs=79.7
Q ss_pred CCCEEEEEecC----CcEEEEEeecCceeeee-e------cCCCCeEEEEEcC-CCCcEEEEEecCC------cEEEEec
Q psy6213 109 ESNWLISGSQD----GTMRLFDIRCQESTKIF-H------SNTESVRDVEFNP-HSPYAFASVSENG------TIQQWDV 170 (330)
Q Consensus 109 ~~~~l~~~~~d----~~i~i~d~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~~~~~~~~dg------~i~i~d~ 170 (330)
++.+++.||.+ ..+.+||..+.+-...- . .....-.+++..+ ++. +++.|+.++ .+.+||.
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~-lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ-LLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE-EEEECCBSSTTCBCCCCEEEET
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE-EEEEcCCCCCCCccccEEEEeC
Confidence 67777787753 46888998876543322 1 1111122333333 554 777777543 4788888
Q ss_pred CCCcc-ceeeeccCCCCeEEEEEcCCCCEEEEEecCC--cEEEEeCCCCccccce----ec-cccceEEEEEcCC-CCeE
Q psy6213 171 RRPEK-CFYQFTAHSGPIFACDWHPEHAWLATASRDK--TIKVWDLSIKPSLEYS----IN-TIASVSRIKWRPQ-RKFH 241 (330)
Q Consensus 171 ~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~----~~-~~~~v~~~~~~~~-~~~l 241 (330)
.+..- .+..+.. ...-.+.+...++++++.|+.++ .+.+||..+..-.... .+ .......+.+..+ ++ +
T Consensus 476 ~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~-i 553 (695)
T 2zwa_A 476 KTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ-G 553 (695)
T ss_dssp TTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE-E
T ss_pred CCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE-E
Confidence 76321 1111111 11112333324788888888655 6899998876321111 11 1122334555655 44 4
Q ss_pred EEEeeccc-----CCeEEEEEccCCC
Q psy6213 242 LASCSLVV-----DSSVNVWDIRRPY 262 (330)
Q Consensus 242 ~~~~~~~~-----~~~i~i~d~~~~~ 262 (330)
++.++... .+.+.+||+.+..
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCc
Confidence 55444211 2579999998775
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.98 E-value=1.2 Score=36.13 Aligned_cols=144 Identities=8% Similarity=0.014 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCcEEEEECCCCCCCceeEEeccc-ccceeEEEEE--ecCCCEEEEE-ecCCcEEEEEeecCceeeeeec-
Q psy6213 64 ENHIATGATNGAVVVWNLGQISRSKQERVFNDH-KRTVNKVSFH--YVESNWLISG-SQDGTMRLFDIRCQESTKIFHS- 138 (330)
Q Consensus 64 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~i~~i~~~--~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~- 138 (330)
++.+++++.||.|.-+|.++ ++..-.+... ..++....-. +.++..++.. +.||.|+.++..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~t---G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRN---GHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEEETTSCEEEEETTT---TEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CCEEEEEeCCCeEEEEECCC---CcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 56788889999999999877 5555555432 1122111100 0122333333 5799999999887754433321
Q ss_pred ---CCCCeEE---EEE-c----CCCCcEEEEEecCCcEEEEecCCCccceeeeccCC--CC-----eEEEEEc-----CC
Q psy6213 139 ---NTESVRD---VEF-N----PHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHS--GP-----IFACDWH-----PE 195 (330)
Q Consensus 139 ---~~~~v~~---~~~-~----~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~-----i~~~~~~-----~~ 195 (330)
...++.. ... . ..+. .+++|+.+|.+...|+++ ++.+..+.... +. ..|.... ..
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g-~Vy~Gs~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~ 164 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDE-KVYTGSMRTIMYTINMLN-GEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC 164 (339)
T ss_dssp HHHTTCSEEEECC----------CCE-EEEECEEEEEEEEEETTT-CCEEEEESTTCBCC--------------------
T ss_pred cceeccccccCCCceeecccccccCC-EEEEEecCCEEEEEECCC-CcEEEEEecCCCcccccccccccccccccccccC
Confidence 1222221 000 0 0233 588999999999999998 55555544221 10 0011110 12
Q ss_pred CCEEEEEecCCcEEEEe
Q psy6213 196 HAWLATASRDKTIKVWD 212 (330)
Q Consensus 196 ~~~l~~~~~dg~i~i~d 212 (330)
+..++.+..+..+.+.+
T Consensus 165 ~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 165 ENMIVIGKTIFELGIHS 181 (339)
T ss_dssp CCEEEEEEEEEECEECC
T ss_pred CCeEEEecceEEEEEEC
Confidence 35677777777777766
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=94.89 E-value=1.6 Score=37.18 Aligned_cols=238 Identities=11% Similarity=0.059 Sum_probs=110.9
Q ss_pred cceEEEEeeCCC--eeecC-CCeEEEEEcCCcceeee-eceeecccc----ccccceeeeeeccc---CCcEEEEEcC--
Q psy6213 6 PVHKHGLKADNG--LAQPS-RNVFKIFLIKDTEFVET-HNLRVGKNI----NLNFSCNDVAWSCI---EENHIATGAT-- 72 (330)
Q Consensus 6 ~v~~~~~s~~~~--~~~~g-d~~i~iw~~~~~~~~~~-~~~~~~~~~----~~~~~v~~~~~~~~---~~~~l~~~~~-- 72 (330)
.-+.|+|.|||. ++++. .|.|++++.+....... ..+...... .-......|+|+|+ ++.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 356899999996 67777 99999997543211111 111100000 01233578999982 2344443222
Q ss_pred C----------CcEEEEECCCC--C-----CCceeEEec--ccccceeEEEEEecCCCEEEEEecCC-------------
Q psy6213 73 N----------GAVVVWNLGQI--S-----RSKQERVFN--DHKRTVNKVSFHYVESNWLISGSQDG------------- 120 (330)
Q Consensus 73 d----------g~i~iw~~~~~--~-----~~~~~~~~~--~~~~~i~~i~~~~~~~~~l~~~~~d~------------- 120 (330)
+ ..|.-|.+... . ..+.+..+. ........|.|.| ++.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCCCCccccccCcC
Confidence 1 13444665431 1 112222221 1223467899998 788777766433
Q ss_pred ----cEEEEEeecC------c-------------eeeeeecCCCCeEEEEEcCC-----CCcEEEEEecCC----cEEEE
Q psy6213 121 ----TMRLFDIRCQ------E-------------STKIFHSNTESVRDVEFNPH-----SPYAFASVSENG----TIQQW 168 (330)
Q Consensus 121 ----~i~i~d~~~~------~-------------~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~dg----~i~i~ 168 (330)
.|.-.|.+.. . ....+...-.....++|+|. +...+..+...| .-.|.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~ 253 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARIL 253 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEe
Confidence 2333333321 0 01112111223456889987 331133332112 12333
Q ss_pred ecCCCc-----cceeeeccCC-CCeEEEEEcC-------CCCEEEEEecCCcEEEEeCCCCccc--ccee----------
Q psy6213 169 DVRRPE-----KCFYQFTAHS-GPIFACDWHP-------EHAWLATASRDKTIKVWDLSIKPSL--EYSI---------- 223 (330)
Q Consensus 169 d~~~~~-----~~~~~~~~~~-~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~---------- 223 (330)
.+..+. .++..+..|. ..+..+.|-. .+.+|+ +...+.|....+...... ....
T Consensus 254 ~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 332 (463)
T 2wg3_C 254 QIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRG 332 (463)
T ss_dssp EEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSSCS
T ss_pred eeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCcccccc
Confidence 332211 2344444332 4677777753 234444 444577666665433111 1111
Q ss_pred ccccceEEEEEcCCCCeEEEEe
Q psy6213 224 NTIASVSRIKWRPQRKFHLASC 245 (330)
Q Consensus 224 ~~~~~v~~~~~~~~~~~l~~~~ 245 (330)
.....+..+...|||..+++..
T Consensus 333 ~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 333 YFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CCCSEEEEEEECTTCCEEEEEE
T ss_pred cccCcceEEEECCCCCEEEEec
Confidence 1235789999999998655553
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.56 E-value=1.7 Score=36.01 Aligned_cols=242 Identities=9% Similarity=-0.049 Sum_probs=111.8
Q ss_pred ceeeeeecccCCcEEEEEcCCC----cEEEEECCCCCCCceeEE---ecc--------cccceeEEEEEecC-CCEEEEE
Q psy6213 53 SCNDVAWSCIEENHIATGATNG----AVVVWNLGQISRSKQERV---FND--------HKRTVNKVSFHYVE-SNWLISG 116 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~---~~~--------~~~~i~~i~~~~~~-~~~l~~~ 116 (330)
.|.++++.|.+.+.+.++...| .|...+ +.....+.... +.. ....|.++++.|.+ ...+..+
T Consensus 56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g 134 (394)
T 3b7f_A 56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAG 134 (394)
T ss_dssp EEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEE
T ss_pred ceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEE
Confidence 4789999885556666666555 343321 22111222211 110 11257788888643 5566666
Q ss_pred ecCCcEEEEEeecCceeeeee-------------------cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccce
Q psy6213 117 SQDGTMRLFDIRCQESTKIFH-------------------SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF 177 (330)
Q Consensus 117 ~~d~~i~i~d~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 177 (330)
+..+.|...+- .++.-..+. .....+.++.++|..+..+..+..++.|...+ ..++..
T Consensus 135 ~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~--DgG~tW 211 (394)
T 3b7f_A 135 TSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST--DAGTDW 211 (394)
T ss_dssp EETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES--STTSSC
T ss_pred ecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC--CCCCCc
Confidence 66665554432 122211111 01235788999985332355555445444432 222222
Q ss_pred eeecc-----C--------CCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCC--ccccceecc--ccceEEEEEcCC-C
Q psy6213 178 YQFTA-----H--------SGPIFACDWHPE-HAWLATASRDKTIKVWDLSIK--PSLEYSINT--IASVSRIKWRPQ-R 238 (330)
Q Consensus 178 ~~~~~-----~--------~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~--~~~v~~~~~~~~-~ 238 (330)
..+.. + ...+.++.++|+ ...+..+...+ |...+-... +........ ...+..++++|. .
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~ 290 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDP 290 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCT
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCCCCcceECCCCCCCCCccceEEEEECCCCC
Confidence 22110 0 124889999985 35666666544 444432221 111110111 023567888763 3
Q ss_pred CeEEEEeecc--------cCCeEEEEEccCCCccceEee-cCCC-------CeEEEEEec-CCCEEEEeecCCeEeee
Q psy6213 239 KFHLASCSLV--------VDSSVNVWDIRRPYIPLASFT-EHKD-------VVSGLAWRG-DPQLFIASSRVSIIPRA 299 (330)
Q Consensus 239 ~~l~~~~~~~--------~~~~i~i~d~~~~~~~~~~~~-~~~~-------~v~~~~~~~-~~~~l~s~~~dg~i~iw 299 (330)
..++++.... .++...+|....+...-..+. +-.. ....++++| +...|+.++.++.|..-
T Consensus 291 ~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S 368 (394)
T 3b7f_A 291 RTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS 368 (394)
T ss_dssp TCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred CEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 3344443100 123345665554322122221 1010 113578887 34556667666666653
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.00 E-value=2.2 Score=35.25 Aligned_cols=215 Identities=8% Similarity=-0.038 Sum_probs=100.2
Q ss_pred CcEEEEEcCCCcEEEEECCC-CCCCceeEEecccccceeEEEEEecCCCEEEEEecCC----cEEEEEeecCceeeeee-
Q psy6213 64 ENHIATGATNGAVVVWNLGQ-ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG----TMRLFDIRCQESTKIFH- 137 (330)
Q Consensus 64 ~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~~~~~~- 137 (330)
...|.+|...| +.+++... ......... ......|.+|++.|.+...+.+++..| .|...+ +.++.-..+.
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~ 98 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATR 98 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSB
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCc
Confidence 55777788777 55555432 111222211 123457999999875555566666555 444332 2222211111
Q ss_pred -----c--------CCCCeEEEEEcCCC-CcEEEEEecCCcEEEEecCCCccceeeec-------------------cCC
Q psy6213 138 -----S--------NTESVRDVEFNPHS-PYAFASVSENGTIQQWDVRRPEKCFYQFT-------------------AHS 184 (330)
Q Consensus 138 -----~--------~~~~v~~~~~~~~~-~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~ 184 (330)
. ....|.++++.|.+ +..+.++...+.|...+-. +.....+. ...
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg--G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH--GASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST--TSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC--CCCeEECcCccCCccccccccccccCCCCC
Confidence 0 11247788898742 2246666666655554322 22221111 012
Q ss_pred CCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCcccccee--------c-----cccceEEEEEcCCC-CeEEEEeeccc
Q psy6213 185 GPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPSLEYSI--------N-----TIASVSRIKWRPQR-KFHLASCSLVV 249 (330)
Q Consensus 185 ~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~-----~~~~v~~~~~~~~~-~~l~~~~~~~~ 249 (330)
..+.+|.++|. ...++.+..++.|...+-. ++.-.... + ....+..+.++|.. ..+++ +.
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~v-g~--- 251 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQ-QN--- 251 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEE-EE---
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEE-Ec---
Confidence 35788999883 3445555544444443322 11111000 0 01348899999873 33444 43
Q ss_pred CCeEEEEEccCCCccceEeec--CC---CCeEEEEEec-CCCEEEEe
Q psy6213 250 DSSVNVWDIRRPYIPLASFTE--HK---DVVSGLAWRG-DPQLFIAS 290 (330)
Q Consensus 250 ~~~i~i~d~~~~~~~~~~~~~--~~---~~v~~~~~~~-~~~~l~s~ 290 (330)
.+.|...+-. ++. ...+.. .. ..+..++++| +...|..+
T Consensus 252 ~~gl~~s~D~-G~t-W~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 252 HCGIYRMDRR-EGV-WKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp TTEEEEEETT-TTE-EECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred CCeEEEeCCC-CCc-ceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 4445444321 211 111111 11 2356788876 34445444
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=93.64 E-value=2.1 Score=33.66 Aligned_cols=182 Identities=10% Similarity=0.008 Sum_probs=101.5
Q ss_pred cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccce
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF 177 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~ 177 (330)
..|..++.. ....++. . ||.|+.|-.+..-.+..-......|..++..... .++. . ||.|+.|-....++.-
T Consensus 24 ~~i~~ia~G--~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h--s~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGG--YFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH--SLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEEC--SSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE--EEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeC--CCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE--EEEE-E-CCEEEEeeCCCCCCCC
Confidence 357777654 2333444 5 8999999866433222111123357777665443 3444 4 8999999876533321
Q ss_pred eeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEE
Q psy6213 178 YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257 (330)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d 257 (330)
.. ..-...|..++...+. .+.-. ||.+..|-.....++-........+..++..... .++ -. +|.++.|-
T Consensus 96 ~P-~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~-l~---~G~v~~wG 165 (282)
T 3qhy_B 96 VP-AEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALA-VK---NGGVIAWG 165 (282)
T ss_dssp CC-GGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEE-EE---TTEEEEEE
T ss_pred CC-cccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEE-EE---CCEEEEec
Confidence 11 1113467777776443 33334 8999999876543333333334567777655442 222 23 78899997
Q ss_pred ccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 258 IRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 258 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
.....+ +.....-...|..++...+. .++ - .||.|+.|-.
T Consensus 166 ~n~~gq-lg~p~~~~~~v~~i~~G~~h-s~a-l-~~G~v~~wG~ 205 (282)
T 3qhy_B 166 DNYFGQ-TTVPAEAQSGVDDVAGGIFH-SLA-L-KDGKVIAWGD 205 (282)
T ss_dssp CCTTST-TSCCGGGGSSEEEEEECSSE-EEE-E-ETTEEEEEEC
T ss_pred CCCCCC-CCCceecCCCeEEEEecCCE-EEE-E-ECCeEEEEEC
Confidence 664333 21111223567777765433 233 3 5999999964
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=92.56 E-value=4.4 Score=34.46 Aligned_cols=105 Identities=9% Similarity=0.045 Sum_probs=57.4
Q ss_pred eeeeecccCCc-EEEEEcCCCcEEEEECCCCCCCceeEEec---------ccccceeEEEEEec---CCCEEEEEecC--
Q psy6213 55 NDVAWSCIEEN-HIATGATNGAVVVWNLGQISRSKQERVFN---------DHKRTVNKVSFHYV---ESNWLISGSQD-- 119 (330)
Q Consensus 55 ~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------~~~~~i~~i~~~~~---~~~~l~~~~~d-- 119 (330)
..|+|.| ++. .++++...|.|++++.........+..+. ........|+++|+ ++.+.++-+.+
T Consensus 17 ~~~a~~p-dG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 17 VGALHSG-DGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEECCS-SSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred eEEEECC-CCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 7899999 775 55566778999999754311111222221 11356788999982 23444433321
Q ss_pred ----------CcEEEEEeecC----------ceeeeee--cCCCCeEEEEEcCCCCcEEEEEec
Q psy6213 120 ----------GTMRLFDIRCQ----------ESTKIFH--SNTESVRDVEFNPHSPYAFASVSE 161 (330)
Q Consensus 120 ----------~~i~i~d~~~~----------~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~ 161 (330)
..|.-|.+..+ +.+..+. .....-..|+|.|++. |+++.++
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd 158 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD 158 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence 13444555321 1222222 1223467899999997 6666554
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=7.8 Score=35.59 Aligned_cols=147 Identities=10% Similarity=0.123 Sum_probs=76.4
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecc-------cccceeEEEEEecCCCEEEEEecCCc----
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFND-------HKRTVNKVSFHYVESNWLISGSQDGT---- 121 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~~i~~i~~~~~~~~~l~~~~~d~~---- 121 (330)
.|.+++++|.+...++++...+.|...+= . ++....+.. ....+.++++.|.+.+.++.+..+..
T Consensus 16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-g---G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 16 YITGIVAHPKTKDLLYARTDIGGAYRWDA-G---TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEET-T---TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEEecC-C---CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 47899999966777888877776654432 2 222222222 12469999998855555555543311
Q ss_pred EEEEEee-cCceeeeeec---------CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc------CCC
Q psy6213 122 MRLFDIR-CQESTKIFHS---------NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA------HSG 185 (330)
Q Consensus 122 i~i~d~~-~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~ 185 (330)
-.||-.. .++.=..... ....+..++++|.....++.+...+. +|-....++.-..... ...
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTTT
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCCC
Confidence 3333322 2322111111 01135678888865545666664443 3333332332222221 124
Q ss_pred CeEEEEEcCC-CCEEEEEecC
Q psy6213 186 PIFACDWHPE-HAWLATASRD 205 (330)
Q Consensus 186 ~i~~~~~~~~-~~~l~~~~~d 205 (330)
.+..+.++|. +..++.+..+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESS
T ss_pred CeEEEEECCCCCCEEEEEEcC
Confidence 5788999884 4456666554
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.68 E-value=5 Score=33.16 Aligned_cols=228 Identities=14% Similarity=0.134 Sum_probs=117.2
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCC--------CceeEEecc-cccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce-
Q psy6213 63 EENHIATGATNGAVVVWNLGQISR--------SKQERVFND-HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES- 132 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~--------~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~- 132 (330)
.....+.-..||.|..|-.....+ ......+.. ....+..++.+. .....+.-..||.|+.|-....-.
T Consensus 61 G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqL 139 (389)
T 3kci_A 61 GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKL 139 (389)
T ss_dssp ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcC
Confidence 445556667789999997543211 011111111 122344456654 666777778899999996542111
Q ss_pred ----------eeeeec-CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc----------eeeec-cCCCCeEEE
Q psy6213 133 ----------TKIFHS-NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC----------FYQFT-AHSGPIFAC 190 (330)
Q Consensus 133 ----------~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~----------~~~~~-~~~~~i~~~ 190 (330)
...+.. ....|..++.... ..++-..+|.|+.|-....++. ...+. .....|..+
T Consensus 140 G~g~~~~~~~p~~v~~l~~~~i~~va~G~~---hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~i 216 (389)
T 3kci_A 140 GHGNRSPCDRPRVIESLRGIEVVDVAAGGA---HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDI 216 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTSCEEEEEECSS---EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred CCCCCccCcCCeEecccCCCeEEEEEeCcC---eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEE
Confidence 111111 2235666654332 3555677899999975432211 11111 122356666
Q ss_pred EEcCCCCEEEEEecCCcEEEEeCCCCcccc----------ceec--cccceEEEEEcCCCCeEEEEeecccCCeEEEEEc
Q psy6213 191 DWHPEHAWLATASRDKTIKVWDLSIKPSLE----------YSIN--TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258 (330)
Q Consensus 191 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~ 258 (330)
+........+.-..||.|..|-.....++- .... ....+..++.... +.++.. .+|.|+.|=.
T Consensus 217 a~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt---~~G~v~~wG~ 291 (389)
T 3kci_A 217 ACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALT---KSGAVYTWGK 291 (389)
T ss_dssp EECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEE---TTSCEEEEEC
T ss_pred EEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEe---CCCeEEEEeC
Confidence 664433566677789999999754321110 0001 1123555555433 223433 4899999965
Q ss_pred cCCCc-------cc---eEeec-CCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 259 RRPYI-------PL---ASFTE-HKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 259 ~~~~~-------~~---~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
....+ .. ..+.. ....|..++.. ....+....||.|+.|-.
T Consensus 292 n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~ 343 (389)
T 3kci_A 292 GDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGD 343 (389)
T ss_dssp CGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEEC
T ss_pred CCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeC
Confidence 32111 00 11111 12346666653 344555678999999953
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=90.73 E-value=9.3 Score=34.56 Aligned_cols=241 Identities=10% Similarity=0.117 Sum_probs=121.9
Q ss_pred EEE-EeeCCCeeecC-------CCeEEEEEcCCcceeeeeceeeccc---cccccceeeeeecccCCcEEEEEc------
Q psy6213 9 KHG-LKADNGLAQPS-------RNVFKIFLIKDTEFVETHNLRVGKN---INLNFSCNDVAWSCIEENHIATGA------ 71 (330)
Q Consensus 9 ~~~-~s~~~~~~~~g-------d~~i~iw~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~------ 71 (330)
.+. ++||+++++.+ -..++++|+++++.+..--....+. .... ...++|.. ++..+++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~--~~~~~W~d-~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGK--FTYPTWIN-KDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEE--TCCEEEEE-TTEEEECCCCSTTCB
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccc--cceeeEEC-CCEEEEEeCCCCCCc
Confidence 444 88999984333 3479999999988763210011000 0000 12347864 445444321
Q ss_pred ----CCCcEEEEECCCCCCCceeEEecccccce-eEEEEEecCCC-----EEEEEecC---CcEEEEEeec--Cceeeee
Q psy6213 72 ----TNGAVVVWNLGQISRSKQERVFNDHKRTV-NKVSFHYVESN-----WLISGSQD---GTMRLFDIRC--QESTKIF 136 (330)
Q Consensus 72 ----~dg~i~iw~~~~~~~~~~~~~~~~~~~~i-~~i~~~~~~~~-----~l~~~~~d---~~i~i~d~~~--~~~~~~~ 136 (330)
....|+.|.+.+.. ..-...+.+....+ .....++ ++. .+++.+.+ ..+++.|... ++ ...+
T Consensus 210 ~~~~~~~~v~~~~~Gt~~-~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l 286 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESI-EKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKI 286 (711)
T ss_dssp CTTSSBCEEEEEETTSCG-GGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEEC
T ss_pred CcCCCCCEEEEEECCCCh-HHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEe
Confidence 12468888887632 12223343333332 2233344 333 34444322 3456666543 32 2222
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEE----------ecCCcEEEEecCCCc------cceee-ecc-CCCCeEEEEEcCCCCE
Q psy6213 137 HSNTESVRDVEFNPHSPYAFASV----------SENGTIQQWDVRRPE------KCFYQ-FTA-HSGPIFACDWHPEHAW 198 (330)
Q Consensus 137 ~~~~~~v~~~~~~~~~~~~~~~~----------~~dg~i~i~d~~~~~------~~~~~-~~~-~~~~i~~~~~~~~~~~ 198 (330)
...... .+..+.++. +++.. ...+.|...|+.+.. ..... +.. ....+..+.+..+ .+
T Consensus 287 ~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l 362 (711)
T 4hvt_A 287 NMPSDA--TLQGSFKEY-VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RV 362 (711)
T ss_dssp CSCTTC--EEEEEETTE-EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CE
T ss_pred ecCCcc--eEeeeECCE-EEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EE
Confidence 222221 123344554 34422 246779999987631 12222 322 2345778888865 56
Q ss_pred EEEEecCCc--EEEEeCCCCc-ccc--ceeccccceEEEEEcCCCCeEEEEee-cccCCeEEEEEcc
Q psy6213 199 LATASRDKT--IKVWDLSIKP-SLE--YSINTIASVSRIKWRPQRKFHLASCS-LVVDSSVNVWDIR 259 (330)
Q Consensus 199 l~~~~~dg~--i~i~d~~~~~-~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~i~i~d~~ 259 (330)
+++...++. +.++|+.++. ... ...+..+.+.....++++..++...+ ...-+.+..+|+.
T Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 777777765 6777766553 111 11222345777777788766555543 2234778888876
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=88.14 E-value=13 Score=34.96 Aligned_cols=33 Identities=27% Similarity=0.235 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc
Q psy6213 186 PIFACDWHPEHAWLATASRDKTIKVWDLSIKPS 218 (330)
Q Consensus 186 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 218 (330)
.+.+++..++..++++-+.|+++|+|++.+++.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 467777888889999999999999999998854
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=85.70 E-value=22 Score=32.70 Aligned_cols=154 Identities=6% Similarity=-0.039 Sum_probs=73.3
Q ss_pred cccceEEEEeeCCCe--eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCc----E
Q psy6213 4 LSPVHKHGLKADNGL--AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGA----V 76 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~--~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~----i 76 (330)
.+.|.+++++|...- ++.+ .+.|...+ +.++--...........-....+.++++.|.+.+.++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 367999999997433 4444 56554443 23332222211110000012347899998844555555543211 3
Q ss_pred EEEECCCCCCCceeEEecc---------cccceeEEEEEecCCCEEEEEecCCcEEEEEee-cCceeeeee------cCC
Q psy6213 77 VVWNLGQISRSKQERVFND---------HKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR-CQESTKIFH------SNT 140 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~---------~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~------~~~ 140 (330)
.||..... ++....... ....+..+++.|.+.+.+..+...+.| |-.. .++.=..+. ...
T Consensus 93 ~v~~S~Dg--G~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 93 AFYVSEDR--GQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp EEEEESST--TSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTT
T ss_pred EEEEECCC--CCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCC
Confidence 34443332 222222111 011356788888556677776644443 3222 222211111 112
Q ss_pred CCeEEEEEcCCCCcEEEEEecC
Q psy6213 141 ESVRDVEFNPHSPYAFASVSEN 162 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~~d 162 (330)
..+..+.++|.....++++..+
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESS
T ss_pred CCeEEEEECCCCCCEEEEEEcC
Confidence 4578899998654345555544
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=82.15 E-value=18 Score=29.00 Aligned_cols=232 Identities=11% Similarity=0.046 Sum_probs=122.8
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCC-CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec---------Cce
Q psy6213 63 EENHIATGATNGAVVVWNLGQISR-SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC---------QES 132 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~---------~~~ 132 (330)
+...+++.+.+|.|+--.+..... ......+... +.+..+.... ..+.++..+..|.++-+.... |.+
T Consensus 4 ~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 4 SEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp CCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 677888999999998776543100 1111123333 3344444443 567777778889877665421 221
Q ss_pred eee---eecCCCCeEEEEEcCC---CCcEEEEEecCCcEEEEecCCC-------ccceeeeccCCCCeEEEEEcCCCCEE
Q psy6213 133 TKI---FHSNTESVRDVEFNPH---SPYAFASVSENGTIQQWDVRRP-------EKCFYQFTAHSGPIFACDWHPEHAWL 199 (330)
Q Consensus 133 ~~~---~~~~~~~v~~~~~~~~---~~~~~~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l 199 (330)
+.. +. ....|..+...++ +. .++.++.+|.++...+..- +.....+.. .+.+..+........+
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~-~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNG-YFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNEL 158 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSC-EEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCc-eEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEE
Confidence 111 22 2344655433332 44 4778899999999877521 111122332 2555555555555678
Q ss_pred EEEecCCcEEEEeCCCCccc--------cceeccccceEEEEEcCCCC-eEEEEeecccCCeEEEEEccCCC------cc
Q psy6213 200 ATASRDKTIKVWDLSIKPSL--------EYSINTIASVSRIKWRPQRK-FHLASCSLVVDSSVNVWDIRRPY------IP 264 (330)
Q Consensus 200 ~~~~~dg~i~i~d~~~~~~~--------~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~~~~i~i~d~~~~~------~~ 264 (330)
+..+.+|.+..++...-+.. .........|..+...+++. .++... ..|..+..++..-. .-
T Consensus 159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt---~~G~gKr~~~~e~~~~~Rg~kG 235 (323)
T 1wp5_A 159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVAT---QRGAVKKMKLTEFEKATRAKRG 235 (323)
T ss_dssp EEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEE---TTSEEEEEEGGGSCCCCTTSCC
T ss_pred EEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEE---CCCceEEEEHHHccccCCCCCC
Confidence 88888999888876543211 11112334566664434444 555554 48888887775311 00
Q ss_pred ceE---eecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 265 LAS---FTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 265 ~~~---~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+.. +......+.++....++..++..+..|.+......
T Consensus 236 v~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 236 VVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp EECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred EECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 111 21222245544333334556667777776655443
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=81.94 E-value=20 Score=29.47 Aligned_cols=204 Identities=9% Similarity=0.073 Sum_probs=110.6
Q ss_pred cceEEEEeeCCCe--eecC---------------CCeEEEEEcCCc--ceeeeeceeeccccccccceeeeeec---cc-
Q psy6213 6 PVHKHGLKADNGL--AQPS---------------RNVFKIFLIKDT--EFVETHNLRVGKNINLNFSCNDVAWS---CI- 62 (330)
Q Consensus 6 ~v~~~~~s~~~~~--~~~g---------------d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~---~~- 62 (330)
.|..+...+++++ +=+| .-+|.+||+.++ +..+.+.++...... ......+++. |.
T Consensus 88 sV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~-~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 88 SIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEK-PTYFGGFAVDVANPKG 166 (381)
T ss_dssp CEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCC-GGGEEEEEEEESCTTT
T ss_pred EeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhccc-CCccceEEEecccCCC
Confidence 4667777777766 3333 226889999999 888888876544332 2335777776 21
Q ss_pred --CCcEEEEEc-CCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC
Q psy6213 63 --EENHIATGA-TNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN 139 (330)
Q Consensus 63 --~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 139 (330)
++.+...+. ..+.|.++|+.+ ++..+.+. .. |.| +....++. +|.-.- +
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~---~~swRv~~--~~------~~p-d~~~~~~i--~G~~~~-----------~--- 218 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKK---QDSWNVTH--PT------FKA-ERPTKFDY--GGKEYE-----------F--- 218 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTT---TEEEEEEC--GG------GSC-CSCEEEEE--TTEEEE-----------E---
T ss_pred CCCccEEEEEcCCCCcEEEEECCC---CcEEEEcc--CC------Ccc-ccCcceEE--CCEEeE-----------e---
Confidence 134444443 467799999988 55555442 11 234 21111111 222111 1
Q ss_pred CCCeEEEEEcCC----CCcEEEEEecCCcEEEEe---cCCC--ccceeeeccCC---CCeEEEEEc-CCCCEEEEEecCC
Q psy6213 140 TESVRDVEFNPH----SPYAFASVSENGTIQQWD---VRRP--EKCFYQFTAHS---GPIFACDWH-PEHAWLATASRDK 206 (330)
Q Consensus 140 ~~~v~~~~~~~~----~~~~~~~~~~dg~i~i~d---~~~~--~~~~~~~~~~~---~~i~~~~~~-~~~~~l~~~~~dg 206 (330)
...+..++++|+ ++.+....-....++--. +++. ...++.+ +.. ..-..++.. .+|.++++--...
T Consensus 219 ~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~ 297 (381)
T 3q6k_A 219 KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTK 297 (381)
T ss_dssp CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSS
T ss_pred ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCC
Confidence 245888999987 665444443333333332 2221 1111212 122 233456675 6788888888889
Q ss_pred cEEEEeCCC-Cc---c--ccceeccccceEEEEEcCCCC
Q psy6213 207 TIKVWDLSI-KP---S--LEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 207 ~i~i~d~~~-~~---~--~~~~~~~~~~v~~~~~~~~~~ 239 (330)
.|..|+..+ .- . .......-..+..+.+.++|.
T Consensus 298 aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~ 336 (381)
T 3q6k_A 298 QVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGG 336 (381)
T ss_dssp EEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSC
T ss_pred eEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCe
Confidence 999999876 21 1 111111223466777776665
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=80.46 E-value=7.2 Score=36.68 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=30.6
Q ss_pred cceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeecee
Q psy6213 6 PVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLR 43 (330)
Q Consensus 6 ~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~ 43 (330)
.+.+++..++..+ ++.+ |+++|+|++.++++.....+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 4677777888888 6777 999999999999988766543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 330 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-16 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-09 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.003 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.004 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.2 bits (209), Expect = 2e-19
Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVES-- 110
+ + IA+ + + V VW ++ + + +H+ V +S+ S
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWV---VATKECKAELREHRHVVECISWAPESSYS 200
Query: 111 -----------------NWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSP 153
+L+SGS+D T++++D+ + VR V F+
Sbjct: 201 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK 260
Query: 154 YAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
+ S +++ T++ WD + +C AH + + D+H ++ T S D+T+KVW+
Sbjct: 261 F-ILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.4 bits (181), Expect = 1e-15
Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 24/206 (11%)
Query: 71 ATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130
+ + ++ + F H+ V V + + + S S D T+R++ + +
Sbjct: 117 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATK 175
Query: 131 ESTKIFHSNTESVRDVEFNPHSPYA-------------------FASVSENGTIQQWDVR 171
E + V + + P S Y+ S S + TI+ WDV
Sbjct: 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235
Query: 172 RPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSR 231
C H + +H ++ + + DKT++VWD K ++ V+
Sbjct: 236 TG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 294
Query: 232 IKWRPQRKFHLASCSLVVDSSVNVWD 257
+ + ++ + S+ D +V VW+
Sbjct: 295 LDFHKTAP-YVVTGSV--DQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.2 bits (178), Expect = 3e-15
Identities = 55/298 (18%), Positives = 104/298 (34%), Gaps = 71/298 (23%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV------ 108
V + + + + + + + VW+ ER H +V +SF +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDY---ETGDFERTLKGHTDSVQDISFDHSGKLLAS 76
Query: 109 -----------------------------------ESNWLISGSQDGTMRLFDIRCQEST 133
+ ++S S+D T+++++++
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136
Query: 134 KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWH 193
K F + E VR V N AS S + T++ W V +C + H + W
Sbjct: 137 KTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWA 194
Query: 194 PEHAWLA--------------------TASRDKTIKVWDLSIKPSLEYSINTIASVSRIK 233
PE ++ + + SRDKTIK+WD+S L + V +
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 254
Query: 234 WRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
+ KF + SC+ D ++ VWD + + + H+ V+ L + + S
Sbjct: 255 FHSGGKF-ILSCAD--DKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTGS 308
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 67.8 bits (164), Expect = 2e-13
Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 7/213 (3%)
Query: 84 ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESV 143
I R ++ + H+ V +V FH + ++S S+D T++++D + + +T+SV
Sbjct: 4 IPRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62
Query: 144 RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS 203
+D+ F+ + + +C H + + P + +AS
Sbjct: 63 QDISFDHSGKLLA--SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 204 RDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI 263
RDKTIK+W++ ++ V ++ +ASCS D +V VW +
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL-IASCSN--DQTVRVWVVATKE- 176
Query: 264 PLASFTEHKDVVSGLAWRGDPQLFIASSRVSII 296
A EH+ VV ++W + S
Sbjct: 177 CKAELREHRHVVECISWAPESSYSSISEATGSE 209
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.0 bits (128), Expect = 7e-09
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 168 WDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
W R PEK Y + H P+ +HP + + +AS D TIKVWD
Sbjct: 3 WIPRPPEK--YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 47
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.1 bits (193), Expect = 4e-17
Identities = 35/183 (19%), Positives = 66/183 (36%), Gaps = 25/183 (13%)
Query: 53 SCNDVAWSCIEENHIATGATNGAVVVWNLG----QISRSKQERVFNDHKRTVNKVSFHYV 108
VA S + +IA G+ + AV VW+ + HK +V V F
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR- 264
Query: 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHS------------NTESVRDVEFNPHSPYAF 156
+ ++SGS D +++L++++ + + + + V V + Y
Sbjct: 265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-I 323
Query: 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACD------WHPEHAWLATASRDKTIKV 210
S S++ + WD + H + + PE+ AT S D ++
Sbjct: 324 LSGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
Query: 211 WDL 213
W
Sbjct: 383 WKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.4 bits (173), Expect = 2e-14
Identities = 27/180 (15%), Positives = 61/180 (33%), Gaps = 28/180 (15%)
Query: 105 FHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN-------TESVRDVEFNPHSPYAFA 157
+ ++ +GS D +R++D + S +SV V F
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VV 270
Query: 158 SVSENGTIQQWDVRRPEKCFYQFTAHS-----------GPIFACDWHPEHAWLATASRDK 206
S S + +++ W+++ T +S + + ++ + S+D+
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 207 TIKVWDLSIKPSL------EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260
+ WD L S+ ++A + P+ A+ S D +W ++
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV-FATGSG--DCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 7e-11
Identities = 40/260 (15%), Positives = 83/260 (31%), Gaps = 26/260 (10%)
Query: 38 ETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHK 97
+ NL + + + V +S + +ATGA + + ++ V
Sbjct: 108 DPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAED-----RLIRIWDIENRKIVMILQG 161
Query: 98 RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157
+ S Y S + + S + V V +P A
Sbjct: 162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 221
Query: 158 SVSENGTIQQWDVRRPEKCF------YQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211
+ S + ++ WD T H +++ + + + + S D+++K+W
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
Query: 212 DLSIKPSLEYSINTIASVSRIKWRPQRKF-----------HLASCSLVVDSSVNVWDIRR 260
+L + S + + + + F ++ S S D V WD +
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK--DRGVLFWDKKS 339
Query: 261 PYIPLASFTEHKDVVSGLAW 280
PL H++ V +A
Sbjct: 340 GN-PLLMLQGHRNSVISVAV 358
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.4 bits (129), Expect = 7e-09
Identities = 54/256 (21%), Positives = 98/256 (38%), Gaps = 32/256 (12%)
Query: 66 HIATGATNGAVVVWNLGQISRSKQE-RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRL 124
TN +++N E DH V V F + +L +G + T ++
Sbjct: 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQV 87
Query: 125 FDIRCQE------------------STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQ 166
+ + +T S+ +R V F+P + A+ +E+ I+
Sbjct: 88 YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF-LATGAEDRLIR 146
Query: 167 QWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI 226
WD K H I++ D+ P L + S D+T+++WDL +++
Sbjct: 147 IWD-IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLSIE 204
Query: 227 ASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI------PLASFTEHKDVVSGLAW 280
V+ + P ++A+ SL D +V VWD ++ S T HKD V + +
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSL--DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262
Query: 281 RGDPQLFIASSRVSII 296
D Q ++ S +
Sbjct: 263 TRDGQSVVSGSLDRSV 278
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 1e-08
Identities = 27/163 (16%), Positives = 58/163 (35%), Gaps = 16/163 (9%)
Query: 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83
+++ + VE + S V ++ + + +G+ + +V +WNL
Sbjct: 227 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQN 285
Query: 84 ISRS---------KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK 134
+ E + HK V V+ +++SGS+D + +D +
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLL 344
Query: 135 IFHSNTESVRDVEFNPHSPYA-----FASVSENGTIQQWDVRR 172
+ + SV V S FA+ S + + W ++
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (182), Expect = 9e-16
Identities = 30/174 (17%), Positives = 66/174 (37%), Gaps = 14/174 (8%)
Query: 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVE 109
L N V + H+ +G+ + ++ VW++ H+ + +
Sbjct: 173 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELK--- 226
Query: 110 SNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWD 169
N L+SG+ D T++++DI+ + + + V + + S++GT++ WD
Sbjct: 227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 286
Query: 170 VRRPEK----CFYQFTAHSGPIFACDWHPEHAWLATASRDKT----IKVWDLSI 215
++ E + G ++ A SR+ T + V D +
Sbjct: 287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 7e-09
Identities = 46/276 (16%), Positives = 95/276 (34%), Gaps = 53/276 (19%)
Query: 55 NDVAWSCIE--ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFH------ 106
+D +C++ N I +G+ + + VW+ K R H V
Sbjct: 16 DDHVITCLQFCGNRIVSGSDDNTLKVWSA---VTGKCLRTLVGHTGGVWSSQMRDNIIIS 72
Query: 107 -------------------------------YVESNWLISGSQDGTMRLFDIRCQESTKI 135
++ ++SGS+D T+R++DI + +
Sbjct: 73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132
Query: 136 FHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE 195
+ +VR + S + + ++ WD C + H+ +++ +
Sbjct: 133 LMGHVAAVR---CVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQFDGI 188
Query: 196 HAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNV 255
H + + S D +I+VWD+ + + S ++ + L S DS+V +
Sbjct: 189 H--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSG--NADSTVKI 241
Query: 256 WDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
WDI+ +K + + + I SS
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSS 277
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 1e-07
Identities = 43/215 (20%), Positives = 77/215 (35%), Gaps = 21/215 (9%)
Query: 79 WNLGQISRSKQERVFNDHKRTVNK-VSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH 137
W G++ K +V H V + F N ++SGS D T++++ + +
Sbjct: 1 WRRGEL---KSPKVLKGHDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGKCLRTLV 54
Query: 138 SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHA 197
+T V + + T + V E T + H
Sbjct: 55 GHTGGVWSSQMRDNIII------SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK 108
Query: 198 WLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257
+ + SRD T++VWD+ L + +A+V +++ +R A D V VWD
Sbjct: 109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY-----DFMVKVWD 163
Query: 258 IRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSR 292
L + H + V L + D ++ S
Sbjct: 164 P-ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL 195
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.4 bits (181), Expect = 1e-15
Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 5/154 (3%)
Query: 105 FHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164
++ +SG+ D + +L+D+R + F + + + F P+ FA+ S++ T
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA-FATGSDDAT 249
Query: 165 IQ-QWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSI 223
+ E Y I + + L D VWD
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 224 NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257
VS + +A+ S DS + +W+
Sbjct: 310 GHDNRVSCLGVTDDGM-AVATGSW--DSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.5 bits (171), Expect = 3e-14
Identities = 45/190 (23%), Positives = 72/190 (37%), Gaps = 8/190 (4%)
Query: 105 FHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164
+++ N +++ S D T L+DI + T F +T V + P + F S + + +
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL-FVSGACDAS 207
Query: 165 IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV--WDLSIKPSLEYS 222
+ WDVR C FT H I A + P AT S D T ++ +
Sbjct: 208 AKLWDVREG-MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 223 INTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282
N I ++ + + + LA D + NVWD + H + VS L
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYD---DFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTD 322
Query: 283 DPQLFIASSR 292
D S
Sbjct: 323 DGMAVATGSW 332
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.2 bits (152), Expect = 7e-12
Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 6/210 (2%)
Query: 88 KQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVE 147
+ R H + + + +S L+S SQDG + ++D + V
Sbjct: 46 RTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 148 FNPHSPYAFASVSEN-GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDK 206
+ P Y +N +I R + A +C + + T+S D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 207 TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA 266
T +WD+ V + P + ++ D+S +WD+R +
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC---DASAKLWDVREG-MCRQ 220
Query: 267 SFTEHKDVVSGLAWRGDPQLFIASSRVSII 296
+FT H+ ++ + + + F S +
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATC 250
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.9 bits (94), Expect = 1e-04
Identities = 16/101 (15%), Positives = 29/101 (28%)
Query: 171 RRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVS 230
R + H I+A W + L +AS+D + +WD + + V
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 231 RIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH 271
+ P + + S N+ H
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH 142
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (159), Expect = 6e-13
Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 19/172 (11%)
Query: 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV 108
L V ++ +I + + + + VWN S + R N HKR + + +
Sbjct: 133 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNT---STCEFVRTLNGHKRGIACLQYR-- 187
Query: 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168
++SGS D T+RL+DI C ++ + E VR S + +G I+ W
Sbjct: 188 -DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAYDGKIKVW 243
Query: 169 DVRRPE--------KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
D+ C HSG +F + + ++S D TI +WD
Sbjct: 244 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 6e-10
Identities = 38/272 (13%), Positives = 81/272 (29%), Gaps = 58/272 (21%)
Query: 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV---------------- 108
I +G + + +W+ + + +R+ H +V + +
Sbjct: 26 QKIVSGLRDNTIKIWD---KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDV 82
Query: 109 ---------------------ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVE 147
+ +++ S+D ++ ++D+ + V
Sbjct: 83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 142
Query: 148 FNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKT 207
S S + TI+ W+ + H I + + + S D T
Sbjct: 143 VVDFDDKYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYRDR--LVVSGSSDNT 199
Query: 208 IKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR-------- 259
I++WD+ + + R R + S D + VWD+
Sbjct: 200 IRLWDIE-----CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAP 254
Query: 260 RPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
+ L + EH V L + D ++SS
Sbjct: 255 AGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS 284
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 2e-09
Identities = 38/213 (17%), Positives = 76/213 (35%), Gaps = 23/213 (10%)
Query: 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWL 113
C V + T + + ++ VW++ + RV H+ VN V F ++
Sbjct: 95 CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYI 151
Query: 114 ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173
+S S D T+++++ E + + + + + S S + TI+ WD+
Sbjct: 152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIA---CLQYRDRLVVSGSSDNTIRLWDIE-- 206
Query: 174 EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTI------- 226
++ + + + D IKVWDL T+
Sbjct: 207 -CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265
Query: 227 --ASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257
V R+++ + S S D ++ +WD
Sbjct: 266 HSGRVFRLQFDEF---QIVSSSH--DDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (122), Expect = 3e-08
Identities = 29/193 (15%), Positives = 69/193 (35%), Gaps = 12/193 (6%)
Query: 91 RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150
++ + V + + ++SG +D T++++D E +I +T SV ++++
Sbjct: 9 HCRSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210
+ V T + + T S+D++I V
Sbjct: 66 RVII------TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119
Query: 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE 270
WD++ + + + + ++ S S D ++ VW+ + +
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCE-FVRTLNG 176
Query: 271 HKDVVSGLAWRGD 283
HK ++ L +R
Sbjct: 177 HKRGIACLQYRDR 189
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.0 bits (146), Expect = 4e-11
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 136 FHS-NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE-KCFYQFTAHSGPIFACDWH 193
+HS E + +N A N + ++ + ++ H+G + DW
Sbjct: 2 YHSFLVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 194 PEHAWLATASRDKTIKVWD 212
P+ + T D+ VW
Sbjct: 61 PDSNRIVTCGTDRNAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.9 bits (143), Expect = 1e-10
Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 7/191 (3%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+ AW+ + IA N V ++ ++ Q +H V V + +SN ++
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAP-DSNRIV 67
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS-ENGTIQQWDV--- 170
+ D ++ ++ + + +V + I
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127
Query: 171 RRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVS 230
C + + + DWHP LA S D +++ IK E T
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 231 RIKWRPQRKFH 241
+
Sbjct: 188 MPFGELMFESS 198
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.2 bits (118), Expect = 1e-07
Identities = 13/164 (7%), Positives = 43/164 (26%), Gaps = 6/164 (3%)
Query: 100 VNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKI--FHSNTESVRDVEFNPHSPYAFA 157
++ +++ + + + + +++ + ++ + V V++ P S
Sbjct: 10 ISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR-IV 67
Query: 158 SVSENGTIQQWDVRRPE-KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL-SI 215
+ + W ++ K + W P A S + I +
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127
Query: 216 KPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259
S + + + D ++
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.2 bits (105), Expect = 5e-06
Identities = 14/165 (8%), Positives = 37/165 (22%), Gaps = 22/165 (13%)
Query: 59 WSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ 118
+ +A + + V + + + ++ + L++
Sbjct: 208 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA-----VTFITESSLVAAGH 262
Query: 119 DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR-----RP 173
D LF F + + + ++ Q D +
Sbjct: 263 DCFPVLFTYDSAAGKLSFGGRLDVPKQS--------SQRGLTARERFQNLDKKASSEGSA 314
Query: 174 EKCFYQFTAHSGPIFACDWHPEHAW----LATASRDKTIKVWDLS 214
+ H + T D + +WD+
Sbjct: 315 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.2 bits (105), Expect = 6e-06
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 181 TAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT--IASVSRIKWRPQR 238
+ PI W+ + +A + + +++ S ++ V+ + W P
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 239 KFHLASCSLVVDSSVNVWDIRRPY 262
+ +C D + VW ++
Sbjct: 64 N-RIVTCG--TDRNAYVWTLKGRT 84
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.5 bits (90), Expect = 4e-04
Identities = 27/193 (13%), Positives = 56/193 (29%), Gaps = 8/193 (4%)
Query: 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH 137
++ + + V+ V F + + S D T+ L D + +
Sbjct: 182 TPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLA 240
Query: 138 SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHA 197
S T + V F S A + +D F A
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFPVLFTYD---SAAGKLSFGGRLDVPKQSSQRGLTA 297
Query: 198 WLATASRDKTIKVWDLSIKPSLEYSI--NTIASVSRIKWRPQRKFHLASCSLVVDSSVNV 255
+ DK + + S+ N+++ +S + + + + D +++
Sbjct: 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM--DGGMSI 355
Query: 256 WDIRRPYIPLASF 268
WD+R L
Sbjct: 356 WDVRSLESALKDL 368
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (145), Expect = 4e-11
Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 5/121 (4%)
Query: 93 FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHS 152
+D + + + + L + + H + ++F
Sbjct: 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV--LSLKFAYCG 277
Query: 153 PYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
+ F S ++ + W F + S + +CD + ++ T S DK V++
Sbjct: 278 KW-FVSTGKDNLLNAWRTPYGASIFQ--SKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Query: 213 L 213
+
Sbjct: 335 V 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (124), Expect = 2e-08
Identities = 21/208 (10%), Positives = 56/208 (26%), Gaps = 8/208 (3%)
Query: 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVES 110
+ + A + + + + ++ +
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195
Query: 111 NWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDV 170
L +G D T+R + H T + + + P + + + +
Sbjct: 196 TKLWTGGLDNTVR-SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS---NVEVL 251
Query: 171 RRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVS 230
+ YQ H + + + W + +D + W + + +SV
Sbjct: 252 HVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP-YGASIFQSKESSSVL 310
Query: 231 RIKWRPQRKFHLASCSLVVDSSVNVWDI 258
K ++ + S D V+++
Sbjct: 311 SCDISVDDK-YIVTGSG--DKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 11/239 (4%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNL--GQISRSKQERVFNDHKRTVNKVSFHYVESNW 112
V S H+ TG G V VW++ + + + +
Sbjct: 55 CAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCT 111
Query: 113 LISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRR 172
LI G + T+ ++D+ + + +
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 173 PEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRI 232
+ QF H+ D + L T D T++ WD + + + + +
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD-LREGRQLQQHDFTSQIFSL 230
Query: 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
+ P ++ ++V + H+ V L + + F+++
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-----LHLHESCVLSLKFAYCGKWFVSTG 284
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.002
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 6/76 (7%)
Query: 140 TESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP----EKCFYQFTAHSGPIFACDWHPE 195
E V V + + + + G ++ WD+ P I +C P+
Sbjct: 51 GEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 196 HAWLATASRDKTIKVW 211
L T+ +W
Sbjct: 109 GCTLIVGGEASTLSIW 124
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.4 bits (139), Expect = 2e-10
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 1/108 (0%)
Query: 105 FHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164
V L+ Q ++ + S S + + A+ S +
Sbjct: 179 AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238
Query: 165 IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
I + V+RP K AH + W L ++ D IK W+
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 3e-05
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVES 110
+ IEE+ +ATG+ + + ++++ K + N HK VN + +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVK--RPMKIIKALNAHKDGVNNLLWE--TP 269
Query: 111 NWLISGSQDGTMRLFDI 127
+ L+S D ++ +++
Sbjct: 270 STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.5 bits (95), Expect = 6e-05
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 174 EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
++ + H+ I A +P L + S D I W S
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 1e-04
Identities = 31/261 (11%), Positives = 77/261 (29%), Gaps = 29/261 (11%)
Query: 60 SCIEENHIATGATNGAVVVWNLGQISRSKQERV----FNDHKRTVNKVSFHYVESNWLIS 115
+ + N + +G+ +G ++ W+ + + + + + + ++ N +
Sbjct: 17 TALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK 76
Query: 116 GSQDGTMRLFDIR-----------------CQESTKIFHSNTESVRDVEFNPHSPYAFAS 158
++ + I S + + Y
Sbjct: 77 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVG 136
Query: 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS 218
+ E TIQ + + E F T P ++A I ++DL +
Sbjct: 137 LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV 196
Query: 219 LEYSINTIASVSRIKWRPQRKFHLASCSLV--------VDSSVNVWDIRRPYIPLASFTE 270
S + + +D+++ ++ ++RP + +
Sbjct: 197 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA 256
Query: 271 HKDVVSGLAWRGDPQLFIASS 291
HKD V+ L W L + +
Sbjct: 257 HKDGVNNLLWETPSTLVSSGA 277
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 2e-04
Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 93 FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIR-CQESTKIFHSNTESVRDVEFNPH 151
K + +E + + +GS D + ++ ++ + K +++ + V ++ +
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP 269
Query: 152 SPYAFASVSENGTIQQWDV 170
S S + I++W+V
Sbjct: 270 S--TLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (89), Expect = 4e-04
Identities = 20/167 (11%), Positives = 54/167 (32%), Gaps = 10/167 (5%)
Query: 91 RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP 150
+ + H + + ++ + LISGS DG + + + + ++ + ++ +
Sbjct: 7 KTISGHNKGITALTVNP-----LISGSYDGRIMEWSS-----SSMHQDHSNLIVSLDNSK 56
Query: 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKV 210
Y+ S + + +A++ A + + + + IK
Sbjct: 57 AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 116
Query: 211 WDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257
L+ S +V + + F L+ + D +
Sbjct: 117 VRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA 163
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.7 bits (132), Expect = 2e-09
Identities = 21/158 (13%), Positives = 51/158 (32%), Gaps = 5/158 (3%)
Query: 89 QERVFNDHKRTVNK-VSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVE 147
Q H +V + F N++I+G+ D +R++D ++ + V ++
Sbjct: 4 QRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 148 FNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKT 207
+ S ++ + ++ + + ++ T SRD T
Sbjct: 61 YAHGGILVSGS-TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119
Query: 208 IKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASC 245
+ VW L + S+ + + +
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 3e-06
Identities = 11/93 (11%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 122 MRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT 181
+ + ++ F + ++ + S S SEN +++R +
Sbjct: 263 GSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANIL 321
Query: 182 AHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
+ I++ ++ + +A +D + L
Sbjct: 322 KDADQIWSVNFKGKTL-VAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 59 WSCI--EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISG 116
+C+ E+N++ TGA + + V++ K + H V + + L+SG
Sbjct: 16 ITCLQFEDNYVITGADDKMIRVYDS---INKKFLLQLSGHDGGVWALKYA--HGGILVSG 70
Query: 117 SQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAF-ASVSENGTIQQWDVRRPEK 175
S D T+R++DI+ T +F + +VR ++ + + + S + T+ W + +
Sbjct: 71 STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130
Query: 176 CFYQFTAHSGPIFACDWHPEHAWLAT 201
H P+ ++
Sbjct: 131 VPDHGEEHDYPLVFHTPEENPYFVGV 156
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.0 bits (94), Expect = 1e-04
Identities = 11/105 (10%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215
+ +++ I+ +D +K Q + H G ++A + ++ ++
Sbjct: 26 VITGADDKMIRVYDSIN-KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG 84
Query: 216 KPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260
+ + + + ++ + S D++++VW + +
Sbjct: 85 CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR--DNTLHVWKLPK 127
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 5e-04
Identities = 27/233 (11%), Positives = 65/233 (27%), Gaps = 12/233 (5%)
Query: 59 WSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ 118
W +E+ + + V H +V N ++SGS
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR---TVSGHGNIVVSGSY 179
Query: 119 DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY 178
D T+ ++D+ + I +T+ + ++ +R +
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI------SASMDTTIRIWDLENG 233
Query: 179 QFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQR 238
+ A + S + ++S I
Sbjct: 234 ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVS 293
Query: 239 KFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASS 291
L S S ++ N++++R + A+ + D + + ++G +
Sbjct: 294 DNILVSGS---ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEK 343
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (129), Expect = 6e-09
Identities = 36/294 (12%), Positives = 78/294 (26%), Gaps = 41/294 (13%)
Query: 61 CIEENHIATGATNGAVVVWN---------LGQISRSKQERVFNDHKRTVNKVSFHYVESN 111
+ + + +G + VW+ + + H + + E
Sbjct: 21 SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80
Query: 112 WLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYA--------------FA 157
+ + S G + + I ++ TK + D + HS +A
Sbjct: 81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV 140
Query: 158 SVSENGTIQQWDVRRPEKCFYQFTAHSGP-----------------IFACDWHPEHAWLA 200
+ GT W T + P + D +A
Sbjct: 141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA 199
Query: 201 TASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRR 260
T + T+++ +LS L + + ++ KF L + N +
Sbjct: 200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 259
Query: 261 PYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIKIFIASSRVSII 314
Y V + + F SS V + + + ++ +
Sbjct: 260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 313
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 1e-06
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 16/92 (17%)
Query: 182 AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI------------KPSLEYSINTIASV 229
AH IF+ + + S D +KVWD + + ++ + +
Sbjct: 12 AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRRP 261
I+ +A+ S + + I R
Sbjct: 70 QAIERDAFELCLVATTSF--SGDLLFYRITRE 99
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 8e-05
Identities = 29/278 (10%), Positives = 79/278 (28%), Gaps = 56/278 (20%)
Query: 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFND-------HKRTVNKVSF 105
+ E +AT + +G ++ + + + +K+ K + + +
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127
Query: 106 H----YVESNWLISGSQDGTMRLFDI------------------RCQESTKIFHSNTESV 143
+ S+ L++ GT ++ Q + + + ++
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187
Query: 144 RDVEFNPHSPYAFASVSENGTIQ-----QWDVRRPEKCFYQFTAHSGPIFACDWHPEHAW 198
V+ + A+ NGT+Q + + +S I + + P+ +
Sbjct: 188 TSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245
Query: 199 LATASRDKTIKVW----------------DLSIKPSLEYSINTIASVSRIKWRPQRKFHL 242
LA A + + + V + + +
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305
Query: 243 ASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAW 280
++ D + WD++ + + H D +
Sbjct: 306 SAGW---DGKLRFWDVKT-KERITTLNMHCDDIEIEED 339
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 5e-04
Identities = 35/292 (11%), Positives = 83/292 (28%), Gaps = 43/292 (14%)
Query: 25 VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWS----CIEENHIATGATNGAVVVWN 80
++I +T+ V L + + S + W + + + G +W
Sbjct: 93 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 152
Query: 81 LGQISRSKQERVFN---------------DHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125
+ N + V E + +G +GT+++
Sbjct: 153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERGLIATGFNNGTVQIS 210
Query: 126 DIRCQESTKIFHS------NTESVRDVEFNPHSPYAFASVSENGTI--QQWDVR------ 171
++ F S N+ S+R V+F+P + N ++
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270
Query: 172 ------RPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT 225
+ AHS + + ++ L +A D ++ WD+ K +
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330
Query: 226 IASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSG 277
+ + SL +V +++ + ++ +
Sbjct: 331 CDDIEIEEDIL--AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV 380
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 51.0 bits (120), Expect = 7e-08
Identities = 16/176 (9%), Positives = 46/176 (26%), Gaps = 15/176 (8%)
Query: 59 WSCIEENHIATGATNGAVVVWNLGQIS----RSKQERVFNDHKRTVNKVSFHY-----VE 109
+ ++ + + ++ + V + N
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 110 SNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWD 169
+ ++ + + I ++ + V + + E G + ++D
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304
Query: 170 VRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT 225
V+ + T + + + D I + L KP E ++ T
Sbjct: 305 VKTRKV-----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE-KPEDERTVET 354
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 19/213 (8%), Positives = 49/213 (23%), Gaps = 3/213 (1%)
Query: 55 NDVAWSCIEENHIATGATNGAVV-VWNL--GQISRSKQERVFNDHKRTVNKVSFHYVESN 111
V + G G + +++ G+ + ++ F V ++
Sbjct: 46 RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND 105
Query: 112 WLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR 171
+ D + + + T S P
Sbjct: 106 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 165
Query: 172 RPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSR 231
+ + T + +A + + L S D + ++ +
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 225
Query: 232 IKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP 264
I P + ++ D+ + P
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.0 bits (117), Expect = 2e-07
Identities = 12/111 (10%), Positives = 32/111 (28%), Gaps = 1/111 (0%)
Query: 105 FHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGT 164
+ S+ + + + + A+ S + +
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247
Query: 165 IQQWDVRRP-EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
+ W++ +P + AH+ + +A +D IK W++
Sbjct: 248 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.8 bits (101), Expect = 1e-05
Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 7/134 (5%)
Query: 128 RCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPI 187
K E N + S +T H+ +
Sbjct: 168 ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 227
Query: 188 FACDWHPEHAWLATASRDKTIKVWDL---SIKPSLEYSINTIASVSRIKWRPQRKFHLAS 244
W P++ LAT S D ++ VW++ S P + + ++SV+ + W + + S
Sbjct: 228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVS 285
Query: 245 CSLVVDSSVNVWDI 258
DS++ W++
Sbjct: 286 AGQ--DSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.8 bits (101), Expect = 1e-05
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 175 KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
H+ I A + L +A + I WD+S
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 42
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.4 bits (100), Expect = 2e-05
Identities = 15/153 (9%), Positives = 40/153 (26%), Gaps = 2/153 (1%)
Query: 90 ERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF-HSNTESVRDVEF 148
++V H + + +S + L S +G + +DI S ++F + + ++
Sbjct: 5 DQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 149 NPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTI 208
S ++ + + S + A
Sbjct: 64 TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123
Query: 209 KVWDLSIKPSLEYSINTIASVSRIKWRPQRKFH 241
+ ++ ++S K
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ 156
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.5 bits (82), Expect = 0.003
Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 93 FNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC--QESTKIFHSNTESVRDVEFNP 150
++ L +GS D ++ ++++ I ++ S +
Sbjct: 219 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 278
Query: 151 HSPYAFASVSENGTIQQWDV 170
+ S ++ I+ W+V
Sbjct: 279 NETT-IVSAGQDSNIKFWNV 297
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 2e-07
Identities = 30/191 (15%), Positives = 51/191 (26%), Gaps = 23/191 (12%)
Query: 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWL 113
N + + + G N V + L + K + V+ E
Sbjct: 150 KNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY 209
Query: 114 ISGSQDGTMRLFD---------------IRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158
S DG + + RC + V +EF+P + +
Sbjct: 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYT 268
Query: 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW-----DL 213
+G I W+++ K F L A+ D T K +
Sbjct: 269 AGSDGIISCWNLQT-RKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAIDQTI 326
Query: 214 SIKPSLEYSIN 224
+ S Y I
Sbjct: 327 ELNASSIYIIF 337
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 3e-07
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 4/124 (3%)
Query: 91 RVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST---KIFHSNTESVRDVE 147
++ K ++ + + L+ S DG++ ++ Q +
Sbjct: 5 QIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 148 FNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKT 207
F ++ + G I + D+ + L AS D
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 208 IKVW 211
I+V
Sbjct: 124 IEVI 127
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 6e-07
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
Query: 182 AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI---KPSLEYSINTIASVSRIKWRPQR 238
A I P + L S D ++ V+ I L S+ + +
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 239 KFHLASCSLVVDSSVNVWD 257
+ ++ +
Sbjct: 69 DLQIYVGTVQGEILKVDLI 87
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 1e-06
Identities = 31/298 (10%), Positives = 80/298 (26%), Gaps = 26/298 (8%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI 114
+D+ ++ + + +G++ V+ +++ +K + +F +
Sbjct: 15 SDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73
Query: 115 SGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPE 174
G+ G + D+ S + +N ++ + + S +G I+ D R
Sbjct: 74 VGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133
Query: 175 KCFYQFTAHSGPIFACDWHPEHAW-----LATASRDKTIKVWDL-SIKPSLEYSINTIAS 228
+ L + ++ + L + +
Sbjct: 134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK 193
Query: 229 VSRIKWRPQRKFHLASCSLVVDSSVNVWDIR--------------RPYIPLASFTEHKDV 274
K +D V V R + T
Sbjct: 194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYP 253
Query: 275 VSGLAWRGDPQLFIASS-----RVSIIPRAKNIKIFIASSRVSIIPRAENIKIFITSS 327
V+ + + + + + K IK F + S++ A + I ++
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT 311
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 46.7 bits (110), Expect = 2e-06
Identities = 24/241 (9%), Positives = 62/241 (25%), Gaps = 19/241 (7%)
Query: 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWL-ISGSQDGTMRLFDIRCQESTKIFH 137
+ + ++ S + V + + + N ++ G + L D E +
Sbjct: 2 FGMKEMRESWK--VHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLD 59
Query: 138 SNTESVRDVEFNPHSPYAFASVSENGTIQQWDV----RRPEKCFYQFTAHSGPIFACDWH 193
+ +V + Y F +G + D+ + +
Sbjct: 60 TG-YAVHISRLSASGRYLFVI-GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG 117
Query: 194 PEHAWL-ATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCS-----L 247
E + A A + D + + ++ P+ + S
Sbjct: 118 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 177
Query: 248 VV----DSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303
+V + + D + + + G + FI ++ + K
Sbjct: 178 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 237
Query: 304 I 304
Sbjct: 238 E 238
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (93), Expect = 3e-04
Identities = 20/189 (10%), Positives = 56/189 (29%), Gaps = 14/189 (7%)
Query: 36 FVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL--GQISRSKQERVF 93
++ + ++ ++ + S ++ +G V + +L + + + ++
Sbjct: 46 LIDGSTYEIKTVLDTGYAVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG 104
Query: 94 NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHS- 152
++ + + + + + D E KI + + + E++P
Sbjct: 105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR 164
Query: 153 ----------PYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATA 202
P +V E G I D + + H + TA
Sbjct: 165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA 224
Query: 203 SRDKTIKVW 211
+ + V
Sbjct: 225 ANARNKLVV 233
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 1e-05
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVES 110
A S ++ AT + + VW++ S+ Q+ + + +V +
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGN 308
Query: 111 NWLISGSQDGTMRLFDI 127
+IS S DGT+ +++
Sbjct: 309 GRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 2e-05
Identities = 22/209 (10%), Positives = 53/209 (25%), Gaps = 7/209 (3%)
Query: 55 NDVAWSCIEENHIATGATNGAVVVW---NLGQISRSKQERVFNDHKRTVNKVSFHYVESN 111
+D++W G V+ + G + + + +
Sbjct: 119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 178
Query: 112 WLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR 171
F + T + + + +
Sbjct: 179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 238
Query: 172 RPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL-SIKPSLEYSINT-IASV 229
K + AT D TI+VWD+ + K +++++
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 298
Query: 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDI 258
++ + S SL D ++N +++
Sbjct: 299 QQVGVVATGNGRIISLSL--DGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 6e-04
Identities = 17/160 (10%), Positives = 34/160 (21%), Gaps = 11/160 (6%)
Query: 65 NHIATGATNGAVV-VWNLGQISRSKQERVFNDHKRTVNKVSFHYVES-NWLISGSQDGTM 122
N IA A V + G + V V F ++ +L SG + G +
Sbjct: 30 NAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV 89
Query: 123 RLFDIR--------CQESTKIFHSNTESVRDVEFNPHSP-YAFASVSENGTIQQWDVRRP 173
++ F + D+ ++ +
Sbjct: 90 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG 149
Query: 174 EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213
T D ++ +
Sbjct: 150 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 189
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 176 CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS---IKPSLEYSINTIASVSRI 232
+ AHSG +F W P+ +A+AS DKTIK+W+++ ++ ++ I
Sbjct: 230 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289
Query: 233 KWRPQRKFHLASCSLVVDSSVNVWDI 258
W Q L S S + +N +
Sbjct: 290 IWTKQ---ALVSISA--NGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.4 bits (100), Expect = 2e-05
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 156 FASVSENGTIQQWDVR--RPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213
AS S + TI+ W+V + EK T W + L + S + I +
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA--LVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.0 bits (94), Expect = 1e-04
Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 162 NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211
++ V +T HS P + A+ +++W
Sbjct: 37 GTSVYTVPVGSL-TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW 85
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 2e-04
Identities = 12/64 (18%), Positives = 24/64 (37%)
Query: 106 HYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTI 165
+ + S S D T++++++ + K T + A S+S NG I
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305
Query: 166 QQWD 169
+
Sbjct: 306 NFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.7 bits (88), Expect = 6e-04
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 51 NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVES 110
+ + IA+ + + + +WN ++ K E+ R ++
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWN---VATLKVEKTIPVGTRIEDQQLGIIWTK 293
Query: 111 NWLISGSQDGTMRLFDI 127
L+S S +G + +
Sbjct: 294 QALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.001
Identities = 12/134 (8%), Positives = 29/134 (21%), Gaps = 5/134 (3%)
Query: 65 NHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRL 124
+ I +V + ++ +H + SG G +R+
Sbjct: 30 DKIQY-CNGTSVYTVP---VGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRI 84
Query: 125 FDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHS 184
+D S + + S + G + V +
Sbjct: 85 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG 144
Query: 185 GPIFACDWHPEHAW 198
+ +
Sbjct: 145 QARAMNSVDFKPSR 158
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (98), Expect = 3e-05
Identities = 15/142 (10%), Positives = 49/142 (34%), Gaps = 6/142 (4%)
Query: 111 NWLISGSQDGTMRLFDIRCQESTKIF--HSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168
+++++ ++ + + D K+ + P A+A+V+++ ++ +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 169 DVRRPE----KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSIN 224
D+ E +F P+ LA +++ ++P+ +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 225 TIASVSRIKWRPQRKFHLASCS 246
R + R+ + + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWA 143
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (88), Expect = 7e-04
Identities = 17/194 (8%), Positives = 46/194 (23%), Gaps = 6/194 (3%)
Query: 64 ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMR 123
++I A +VV + +++ K + D T + ++ ++
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLV 59
Query: 124 LFDIR-----CQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY 178
D+ + +S+ +P S +P +
Sbjct: 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119
Query: 179 QFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQR 238
A + + LA A + + + + W +
Sbjct: 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179
Query: 239 KFHLASCSLVVDSS 252
++
Sbjct: 180 YAQPDVLAVWNQHE 193
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 9e-04
Identities = 10/178 (5%), Positives = 38/178 (21%), Gaps = 7/178 (3%)
Query: 38 ETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHK 97
+ L ++ + + E ++
Sbjct: 136 QITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195
Query: 98 RTVNKVSF-HYVESNWLISGSQDGTMRLFDIRCQESTKI-FHSNTESVRDVEFNPHSPYA 155
+ + + + + + D+ E NP A
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255
Query: 156 FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213
F ++ +D+ + + ++ + + + + + +D
Sbjct: 256 F---GAYNVLESFDLEKNASI--KRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.5 bits (90), Expect = 3e-04
Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 1/85 (1%)
Query: 114 ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173
I+ S+ + + D+ + T + +P + + + + + D
Sbjct: 6 IANSESDNISVIDVTSNKVTATI-PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64
Query: 174 EKCFYQFTAHSGPIFACDWHPEHAW 198
S A + +
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVY 89
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (89), Expect = 5e-04
Identities = 9/109 (8%), Positives = 26/109 (23%), Gaps = 6/109 (5%)
Query: 110 SNWLISGSQDGTMRLFDIRCQESTK-IFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168
++I + + + D+ K + P + A+ + G I
Sbjct: 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67
Query: 169 DVRRPE-----KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212
D+ + +++ P+ +
Sbjct: 68 DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (89), Expect = 6e-04
Identities = 4/103 (3%), Positives = 25/103 (24%), Gaps = 3/103 (2%)
Query: 112 WLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVR 171
+ D++ ++ ++ + ++D++
Sbjct: 222 DPATADLLYGYLSVDLKTGKTHTQEFADLTE-LYFTGLRSPKDPNQIYGVLNRLAKYDLK 280
Query: 172 RPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLS 214
+ + + + + + L + V++
Sbjct: 281 QRKLI--KAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 36.3 bits (82), Expect = 0.004
Identities = 8/112 (7%), Positives = 25/112 (22%), Gaps = 9/112 (8%)
Query: 192 WHPEHAWLATASRDKTIKVWDL-SIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVD 250
H ++ + + V D+ S + P + +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH--Y 61
Query: 251 SSVNVWDI-----RRPYIPLASFTEHKDVVSGLAW-RGDPQLFIASSRVSII 296
+ D+ + E + A +++ + +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL 113
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 330 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.98 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.93 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.92 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.9 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.89 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.88 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.84 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.72 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.7 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.67 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.6 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.57 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.55 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.53 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.52 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.49 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.44 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.44 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.41 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.41 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.4 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.39 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.35 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.25 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.21 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.18 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.18 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.14 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.03 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.87 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.82 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.69 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.64 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.57 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.49 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.39 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.35 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.33 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.3 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.06 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.81 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.81 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.52 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.35 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.23 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 97.14 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.99 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.76 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.72 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.7 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.65 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.59 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 96.32 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.23 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.2 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.96 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.91 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.63 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.23 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 95.22 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.1 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 95.04 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 95.01 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.76 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 94.53 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 93.36 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 92.83 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 92.58 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 86.8 | |
| d2ebsa1 | 427 | Oligoxyloglucan reducing end-specific cellobiohydr | 83.16 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-48 Score=317.18 Aligned_cols=286 Identities=13% Similarity=0.186 Sum_probs=244.1
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.|.++|+|++|+|+|++|++| ||.|+|||+.+++....... .....+...|.+++|+| ++++|++|+.||.|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~--~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQ--LDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEE--EECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEE--eeecCCCCcEEEEEEcC-CCCEEEEeeccccccccc
Confidence 599999999999999997778 99999999987654332221 11223445589999999 999999999999999999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
+... ..+....+..|...+..++|+| ++.++++++.|+.|++||+.+++.......|...+.+++|++++. .+++++
T Consensus 126 ~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~-~~~~~~ 202 (337)
T d1gxra_ 126 LAAP-TPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWTGG 202 (337)
T ss_dssp CCCC---EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred cccc-cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 8752 2455667788999999999998 899999999999999999999999988888999999999999998 589999
Q ss_pred cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCe
Q psy6213 161 ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKF 240 (330)
Q Consensus 161 ~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 240 (330)
.|+.+++||+++ .+.+..+ .|...|.+++|+|++++|++++.|+.+++||++..+. .....+...|.+++|+|++++
T Consensus 203 ~d~~v~i~d~~~-~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~i~~v~~s~~g~~ 279 (337)
T d1gxra_ 203 LDNTVRSWDLRE-GRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp TTSEEEEEETTT-TEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSE
T ss_pred cccccccccccc-ceeeccc-ccccceEEEEEcccccccceecccccccccccccccc-ccccccccccceEEECCCCCE
Confidence 999999999997 4555554 4789999999999999999999999999999998744 455667889999999999997
Q ss_pred EEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 241 HLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 241 l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
++ +++ .|+.|++||+.+++. +.. ..|...|.+++|+|++++|++|+.||.|++|+.
T Consensus 280 l~-s~s--~Dg~i~iwd~~~~~~-~~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 280 FV-STG--KDNLLNAWRTPYGAS-IFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EE-EEE--TTSEEEEEETTTCCE-EEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EE-EEe--CCCeEEEEECCCCCE-EEE-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 54 555 599999999998875 444 457889999999999999999999999999975
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1e-45 Score=300.72 Aligned_cols=284 Identities=15% Similarity=0.175 Sum_probs=237.8
Q ss_pred CcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEEC
Q psy6213 3 YLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNL 81 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 81 (330)
+.+.+.+++++|+|+.++.+ ++.+.+|++++.+....+..|.. .|++++|+| ++++|++|+.||.|++||+
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~-------~v~~~~~sp-~g~~latg~~dg~i~iwd~ 87 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH-------QTTVAKTSP-SGYYCASGDVHGNVRIWDT 87 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSS-------CEEEEEECT-TSSEEEEEETTSEEEEEES
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCC-------CEEEEEEeC-CCCeEeccccCceEeeeee
Confidence 45677889999999997777 88999999998887776655443 369999999 9999999999999999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEec--CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ--DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
.... ......+..|..+|.+++|+| +++++++++. +..+++|++++++....+.+|...|++++|+|++++++++|
T Consensus 88 ~~~~-~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sg 165 (311)
T d1nr0a1 88 TQTT-HILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG 165 (311)
T ss_dssp SSTT-CCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred eccc-cccccccccccCccccccccc-cccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence 8732 233455788999999999998 8888988875 45699999999999999999999999999999999889999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc-------ceeccccceEEE
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE-------YSINTIASVSRI 232 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-------~~~~~~~~v~~~ 232 (330)
+.||.|++||+++ .+....+..|..+|+++.|+|+++++++++.|+.+++||.+++.... ....|...|.++
T Consensus 166 s~d~~i~i~d~~~-~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~ 244 (311)
T d1nr0a1 166 SDDNTVAIFEGPP-FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL 244 (311)
T ss_dssp ETTSCEEEEETTT-BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred ccccccccccccc-cccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998 67778888999999999999999999999999999999998774422 223467889999
Q ss_pred EEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCC-CeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 233 KWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKD-VVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 233 ~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
+|+|++++++ +++ .||.|++||+++++. +..+..|.. ....+.+.++++.|++++.||.|++|++
T Consensus 245 ~~s~~~~~l~-tgs--~Dg~v~iwd~~t~~~-~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 245 TWSPDGTKIA-SAS--ADKTIKIWNVATLKV-EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310 (311)
T ss_dssp EECTTSSEEE-EEE--TTSEEEEEETTTTEE-EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred ccCCCCCEEE-EEe--CCCeEEEEECCCCcE-EEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence 9999999755 555 599999999998875 677766543 2233344445678999999999999975
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7e-46 Score=311.13 Aligned_cols=291 Identities=19% Similarity=0.269 Sum_probs=238.1
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeecc-----------ccccccceeeeeecccCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGK-----------NINLNFSCNDVAWSCIEENHIAT 69 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~l~~ 69 (330)
.|.+.|+|++|+|||++|++| |+.|+|||+.+++....+..+... .......|.+++|+| ++++|++
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s 138 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLAT 138 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC-CCCccee
Confidence 599999999999999998888 999999999998877665443211 122345589999999 9999999
Q ss_pred EcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEc
Q psy6213 70 GATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFN 149 (330)
Q Consensus 70 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 149 (330)
|+.||.|++|+... .+......+|...|.++.+++ ++..+++++.++.+++||.++.........+ ....++.+.
T Consensus 139 ~~~dg~v~i~~~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~ 213 (388)
T d1erja_ 139 GAEDRLIRIWDIEN---RKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVS 213 (388)
T ss_dssp EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEEEC
T ss_pred cccccccccccccc---ccccccccccccccccccccc-ccccccccccceeeeeeeccccccccccccc-ccccccccc
Confidence 99999999999988 788888899999999999998 8899999999999999999988877766644 455566666
Q ss_pred CCCCcEEEEEecCCcEEEEecCCCccceee-------eccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcc----
Q psy6213 150 PHSPYAFASVSENGTIQQWDVRRPEKCFYQ-------FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPS---- 218 (330)
Q Consensus 150 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---- 218 (330)
+....++++++.||.|++||.++.. .... ..+|.+.|.+++|+|++++|++++.||.|++||++....
T Consensus 214 ~~~~~~l~~~~~d~~i~i~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 292 (388)
T d1erja_ 214 PGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292 (388)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred CCCCCeEEEEcCCCeEEEeecccCc-cceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccc
Confidence 6444479999999999999998743 3322 345888999999999999999999999999999976533
Q ss_pred --------ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEE------ecCC
Q psy6213 219 --------LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAW------RGDP 284 (330)
Q Consensus 219 --------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~------~~~~ 284 (330)
......+...+.+++|+|++++++ +++ .||.|++||+++++. +..+.+|.+.|.++++ +|++
T Consensus 293 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-sg~--~dg~i~vwd~~~~~~-~~~l~~H~~~V~~~~~~~~~~~spd~ 368 (388)
T d1erja_ 293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGS--KDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEY 368 (388)
T ss_dssp ------CEEEEEECCSSCEEEEEECGGGCEEE-EEE--TTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTC
T ss_pred ccccccceeeecccccceEEEEEECCCCCEEE-EEe--CCCEEEEEECCCCcE-EEEEeCCCCCEEEEEEecCcccCCCC
Confidence 222334677899999999999754 455 599999999999876 8899999999999975 5689
Q ss_pred CEEEEeecCCeEeeeeccc
Q psy6213 285 QLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 285 ~~l~s~~~dg~i~iw~~~~ 303 (330)
++|++|+.||+|++|+..+
T Consensus 369 ~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 369 NVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp EEEEEEETTSEEEEEEEEE
T ss_pred CEEEEEeCCCEEEEEeeee
Confidence 9999999999999998643
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-45 Score=300.43 Aligned_cols=281 Identities=22% Similarity=0.373 Sum_probs=252.8
Q ss_pred CCcccceEEEEeeCCCee-ecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLA-QPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~-~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|+++++ +++ ||.|+|||+++++....+..+.. .|.+++|+| ++.+++++..++.+.+|
T Consensus 15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~-------~V~~~~~~~-~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-------SVQDISFDH-SGKLLASCSADMTIKLW 86 (317)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSS-------CEEEEEECT-TSSEEEEEETTSCCCEE
T ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC-------cEEEEeeec-ccccccccccccccccc
Confidence 499999999999999995 445 99999999999988777665443 369999999 99999999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
+... ......+..|...+.++.++| +++.+++++.|+.+++||+++++....+..|...+.+++|+|++. +++++
T Consensus 87 ~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~ 161 (317)
T d1vyhc1 87 DFQG---FECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASC 161 (317)
T ss_dssp ETTS---SCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred cccc---cccccccccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCC-EEEEE
Confidence 9887 667777788999999999998 899999999999999999999999999999999999999999998 69999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCC--------------------CEEEEEecCCcEEEEeCCCCccc
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH--------------------AWLATASRDKTIKVWDLSIKPSL 219 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~~dg~i~i~d~~~~~~~ 219 (330)
+.|+.|++|++++ ......+..|...+.++.|+|++ .++++++.|+.|++||+++++..
T Consensus 162 ~~d~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 240 (317)
T d1vyhc1 162 SNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240 (317)
T ss_dssp ETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred eCCCeEEEEeecc-ceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence 9999999999998 66777888899999999998753 47899999999999999998777
Q ss_pred cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeee
Q psy6213 220 EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRA 299 (330)
Q Consensus 220 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw 299 (330)
.....|...+.+++|+|++++++++ + .||.|++||+++++. +..+.+|.++|++++|+|++++|++|+.||.|++|
T Consensus 241 ~~~~~~~~~v~~~~~~~~~~~l~s~-~--~dg~i~iwd~~~~~~-~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iW 316 (317)
T d1vyhc1 241 MTLVGHDNWVRGVLFHSGGKFILSC-A--DDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316 (317)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEE-E--TTTEEEEECCTTSCC-CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEE-E--CCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEe
Confidence 7777889999999999999975544 4 599999999998876 88999999999999999999999999999999999
Q ss_pred e
Q psy6213 300 K 300 (330)
Q Consensus 300 ~ 300 (330)
+
T Consensus 317 d 317 (317)
T d1vyhc1 317 E 317 (317)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-42 Score=285.17 Aligned_cols=283 Identities=23% Similarity=0.300 Sum_probs=242.2
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|+++++++| ||.|+|||+.+++....+..+.. .|.+++|+| ++.++++|+.|+.+.+|
T Consensus 53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~-------~v~~v~~~~-~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-------WVMTCAYAP-SGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCS-------CEEEEEECT-TSSEEEEEETTCCEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccc-------cEEeeEeec-cceeeeeecccceeecc
Confidence 699999999999999995555 99999999999988777665543 369999999 99999999999999999
Q ss_pred ECCCCCC-CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 80 NLGQISR-SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
+...... ......+.+|.......... .+..+.....+.....++............+...+....+.+.+. ++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 201 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVS 201 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS-EEEE
T ss_pred cccccccccccceecccccccccccccc--cccccccccccccccccccccccccccccccceeEeeeccccccc-eeEE
Confidence 9876322 34455667777777766665 467788888899999999888777777777888899999999888 6999
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc--eeccccceEEEEEcC
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY--SINTIASVSRIKWRP 236 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~ 236 (330)
++.|+.|++||+++ .+++..+.+|...|++++|+|++++|++++.||.|++||++....... ...+...+.+++|+|
T Consensus 202 ~~~d~~v~i~d~~~-~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 280 (340)
T d1tbga_ 202 GACDASAKLWDVRE-GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp EETTTEEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred eecCceEEEEECCC-CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC
Confidence 99999999999998 677888999999999999999999999999999999999998755433 234567799999999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
+++++++ ++ .||.|++||+.+++. +..+.+|.++|++++|+|++++|++|+.||.|++|+
T Consensus 281 ~~~~l~~-g~--~dg~i~iwd~~~~~~-~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 281 SGRLLLA-GY--DDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEE-EE--TTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEE-EE--CCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9997555 44 599999999998876 888999999999999999999999999999999995
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6e-43 Score=291.69 Aligned_cols=286 Identities=15% Similarity=0.164 Sum_probs=228.6
Q ss_pred CcccceEEEEeeCCCee-ecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 3 YLSPVHKHGLKADNGLA-QPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~-~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
+.+||+|++|+|||+++ +++ ||.|+|||.++++......++. +...|.+++|+| ++++|++|+.|+.|++||
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~g-----H~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd 79 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-----HNGQVTGVDWAP-DSNRIVTCGTDRNAYVWT 79 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-----CSSCEEEEEEET-TTTEEEEEETTSCEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecC-----CCCCEEEEEECC-CCCEEEEEECCCeEEEEe
Confidence 35899999999999995 455 9999999998876554433332 234479999999 999999999999999999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee----eeeecCCCCeEEEEEcCCCCcEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST----KIFHSNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~ 156 (330)
+.+. .......+..|...|.+++|+| +++.|++++.|+.+++|++...... .....|...|.+++|+|++. +|
T Consensus 80 ~~~~-~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l 156 (371)
T d1k8kc_ 80 LKGR-TWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LL 156 (371)
T ss_dssp EETT-EEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EE
T ss_pred eccc-cccccccccccccccccccccc-ccccceeecccCcceeeeeeccccccccccccccccccccccccccccc-ce
Confidence 9762 2334555678899999999999 8999999999999999999876543 33445788999999999998 58
Q ss_pred EEEecCCcEEEEecCCCc-----------------cceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc
Q psy6213 157 ASVSENGTIQQWDVRRPE-----------------KCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL 219 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 219 (330)
++|+.|+.+++||..... ........|...|.+++|+|++++|++++.|+.|++||+..++..
T Consensus 157 ~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~ 236 (371)
T d1k8kc_ 157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 236 (371)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred eccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccce
Confidence 999999999999986421 233445678889999999999999999999999999999998777
Q ss_pred cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc-----------------------------------
Q psy6213 220 EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP----------------------------------- 264 (330)
Q Consensus 220 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~----------------------------------- 264 (330)
.....+..+|.+++|+|++++ ++++. |+.+++|........
T Consensus 237 ~~~~~~~~~v~s~~fs~d~~~-la~g~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (371)
T d1k8kc_ 237 ATLASETLPLLAVTFITESSL-VAAGH---DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 312 (371)
T ss_dssp EEEECSSCCEEEEEEEETTEE-EEEET---TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC----
T ss_pred eeeecccccceeeeecCCCCE-EEEEc---CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEec
Confidence 777778889999999999985 66665 787777654332100
Q ss_pred -----ceEeecCCCCeEEEEEecCC----CEEEEeecCCeEeeeec
Q psy6213 265 -----LASFTEHKDVVSGLAWRGDP----QLFIASSRVSIIPRAKN 301 (330)
Q Consensus 265 -----~~~~~~~~~~v~~~~~~~~~----~~l~s~~~dg~i~iw~~ 301 (330)
......|.+.|+++++.|.+ ..|+|+|.||.|++|+.
T Consensus 313 ~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~ 358 (371)
T d1k8kc_ 313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358 (371)
T ss_dssp -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred cccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence 00001388899999998844 36899999999999975
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.3e-41 Score=270.11 Aligned_cols=281 Identities=12% Similarity=0.117 Sum_probs=214.9
Q ss_pred CCcccceEEEEeeCCCeeec-C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQP-S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~-g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|.++|++++|+|||+++++ + ||.|++||+++++....+.. .+...|++++|+| ++.+ ++++.|+.+++|
T Consensus 10 GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~------~h~~~v~~v~~~~-~g~~-~~~~~d~~v~~~ 81 (299)
T d1nr0a2 10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD------VHATMITGIKTTS-KGDL-FTVSWDDHLKVV 81 (299)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC------SCSSCEEEEEECT-TSCE-EEEETTTEEEEE
T ss_pred CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC------CCCCcEEEEEeec-ccee-ecccceeeEEEe
Confidence 69999999999999999554 4 99999999999887655431 1223479999999 7765 556678999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
+...............+...+.+++|+| ++.++++++ ++.+++|+.. +..... ....+.+++|+|+++ +++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~-~l~~g 154 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQ-FVAVG 154 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSC-EEEEE
T ss_pred ccCCcccccccccccccccccccccccc-ccccccccc-cccccccccc--cccccc--ccccccccccccccc-ccccc
Confidence 9876332233333445778899999998 777666655 6789999853 222222 345688999999998 69999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc---cceeccccceEEEEEcC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL---EYSINTIASVSRIKWRP 236 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~~~~~~ 236 (330)
+.||.|++||+++..........|...|++++|+|++++|++++.|+.|++||+.+.... .....|..+|++++|+|
T Consensus 155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 234 (299)
T d1nr0a2 155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234 (299)
T ss_dssp ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999998744333345568999999999999999999999999999999876443 23344678999999999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCcc-ceEeecC-CCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIP-LASFTEH-KDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
++++ +++++ .|+.|++||++++... ......| ...+.++.| +++++|++++.||.|++|+.
T Consensus 235 ~~~~-l~sgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 235 DNVR-LATGS--LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp TSSE-EEEEE--TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred cccc-eEEEc--CCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEec
Confidence 9997 55555 6999999999877542 2233333 346676655 56789999999999999975
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-39 Score=264.11 Aligned_cols=242 Identities=21% Similarity=0.290 Sum_probs=195.9
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC--CCcEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT--NGAVV 77 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~ 77 (330)
.|.+.|++++|+|+|+++++| ||.|+|||+.+++......... +..+|.+++|+| ++++|++++. +..++
T Consensus 56 ~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~ 129 (311)
T d1nr0a1 56 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV-----FSGPVKDISWDS-ESKRIAAVGEGRERFGH 129 (311)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC-----SSSCEEEEEECT-TSCEEEEEECCSSCSEE
T ss_pred CCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccc-----ccCccccccccc-ccccccccccccccccc
Confidence 599999999999999996555 9999999999876543332221 234479999999 9999988875 45699
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
+|++++ .+....+.+|...|.+++|+|++...|++|+.|+.|++||+++++....+..|..+|+++.|+|+++ +++
T Consensus 130 v~~~~~---~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~-~l~ 205 (311)
T d1nr0a1 130 VFLFDT---GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFA 205 (311)
T ss_dssp EEETTT---CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred cccccc---ccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccc-ccc
Confidence 999987 6667778899999999999994445688999999999999999999999999999999999999998 699
Q ss_pred EEecCCcEEEEecCCCccceee-------eccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecc---cc
Q psy6213 158 SVSENGTIQQWDVRRPEKCFYQ-------FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT---IA 227 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~ 227 (330)
+++.|+.|++||+++.. .... ..+|.+.|++++|+|++++|++|+.||.|++||+++++.......+ ..
T Consensus 206 ~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~ 284 (311)
T d1nr0a1 206 STGGDGTIVLYNGVDGT-KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284 (311)
T ss_dssp EEETTSCEEEEETTTCC-EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred ccccccccccccccccc-ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccc
Confidence 99999999999998743 3322 3458889999999999999999999999999999988655443332 23
Q ss_pred ceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 228 SVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 228 ~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
.+.++.|++ ..+++++ .||.|++||++
T Consensus 285 ~~~~~~~~~--~~l~s~s---~dG~i~~wd~d 311 (311)
T d1nr0a1 285 QQLGIIWTK--QALVSIS---ANGFINFVNPE 311 (311)
T ss_dssp CEEEEEECS--SCEEEEE---TTCCEEEEETT
T ss_pred eEEEEEecC--CEEEEEE---CCCEEEEEeCC
Confidence 445555554 4545444 59999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-38 Score=262.41 Aligned_cols=243 Identities=18% Similarity=0.282 Sum_probs=208.8
Q ss_pred ccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeE--EecccccceeEEEEEecCCCEEEEEecCCcEEEEE
Q psy6213 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQER--VFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFD 126 (330)
Q Consensus 49 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d 126 (330)
.+...|.+++|+| ++++|++|+ ||.|+|||+.......... ....|.+.|.+++|+| ++++|++|+.||.|++||
T Consensus 49 ~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEE
T ss_pred CCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC-CCCEEEEeeccccccccc
Confidence 3455689999999 999999997 7999999998744333333 3457889999999998 899999999999999999
Q ss_pred eecC--ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec
Q psy6213 127 IRCQ--ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 127 ~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
+... +....+..|...+.+++|+|++. ++++++.++.|++||+++ .+.......|...+.+++|++++..+++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~-~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~ 203 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT-TEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccccccccccccccccccccccc-cccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 8744 45566777889999999999998 689999999999999998 5667778889999999999999999999999
Q ss_pred CCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCC
Q psy6213 205 DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDP 284 (330)
Q Consensus 205 dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 284 (330)
|+.+++||+++++. .....+...+.+++|+|+++++++++ .++.+++||++.+.. .....|...|.+++|+|++
T Consensus 204 d~~v~i~d~~~~~~-~~~~~~~~~i~~l~~~~~~~~l~~~~---~d~~i~i~d~~~~~~--~~~~~~~~~i~~v~~s~~g 277 (337)
T d1gxra_ 204 DNTVRSWDLREGRQ-LQQHDFTSQIFSLGYCPTGEWLAVGM---ESSNVEVLHVNKPDK--YQLHLHESCVLSLKFAYCG 277 (337)
T ss_dssp TSEEEEEETTTTEE-EEEEECSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTSSCE--EEECCCSSCEEEEEECTTS
T ss_pred ccccccccccccee-ecccccccceEEEEEcccccccceec---ccccccccccccccc--ccccccccccceEEECCCC
Confidence 99999999998844 34456788999999999999755444 599999999998764 4667899999999999999
Q ss_pred CEEEEeecCCeEeeeecc
Q psy6213 285 QLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 285 ~~l~s~~~dg~i~iw~~~ 302 (330)
++|++++.||.|++|+..
T Consensus 278 ~~l~s~s~Dg~i~iwd~~ 295 (337)
T d1gxra_ 278 KWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp SEEEEEETTSEEEEEETT
T ss_pred CEEEEEeCCCeEEEEECC
Confidence 999999999999999754
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.5e-39 Score=267.14 Aligned_cols=239 Identities=17% Similarity=0.213 Sum_probs=199.8
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
+|+|++|+| ++++||+|+.||.|++||.++ .+......+.+|.++|.+++|+| ++++|++|+.|+.|++||+++++.
T Consensus 9 pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~-~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 9 PISCHAWNK-DRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CCCEEEECT-TSSEEEEECSSSEEEEEEEET-TEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEE
T ss_pred CeEEEEECC-CCCEEEEEeCCCEEEEEECCC-CCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeeccccc
Confidence 479999999 999999999999999999976 22346677889999999999999 899999999999999999987764
Q ss_pred e--eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc---eeeeccCCCCeEEEEEcCCCCEEEEEecCCc
Q psy6213 133 T--KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC---FYQFTAHSGPIFACDWHPEHAWLATASRDKT 207 (330)
Q Consensus 133 ~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 207 (330)
. ..+..|...|.+++|+|+++ .+++++.|+.+++|++...... ......|...|.+++|+|++++|++++.|+.
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccccccccccccccccccccccc-cceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence 4 34456788999999999998 6999999999999998764322 2345568899999999999999999999999
Q ss_pred EEEEeCCCCcc------------------ccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee
Q psy6213 208 IKVWDLSIKPS------------------LEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT 269 (330)
Q Consensus 208 i~i~d~~~~~~------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 269 (330)
+++||...... ......+...+.+++|+|++++ +++++ .|+.|++||+.++.. +..+.
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~s~~--~d~~i~iwd~~~~~~-~~~~~ 240 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR-VAWVS--HDSTVCLADADKKMA-VATLA 240 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE-EEEEE--TTTEEEEEEGGGTTE-EEEEE
T ss_pred EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc-ccccc--cCCcceEEeeecccc-eeeee
Confidence 99999865421 1222345677999999999997 55555 599999999998876 88889
Q ss_pred cCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 270 EHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 270 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
.|..+|.+++|+|++++|++| .|+.+++|.
T Consensus 241 ~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~ 270 (371)
T d1k8kc_ 241 SETLPLLAVTFITESSLVAAG-HDCFPVLFT 270 (371)
T ss_dssp CSSCCEEEEEEEETTEEEEEE-TTSSCEEEE
T ss_pred cccccceeeeecCCCCEEEEE-cCCceEEEE
Confidence 999999999999999877765 577777764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.9e-38 Score=257.02 Aligned_cols=288 Identities=13% Similarity=0.152 Sum_probs=213.5
Q ss_pred ccceEEEEeeCCCeeecC-CCe--EEEEEcCCcceeeeeceeeccccccccceeeeeeccc-CCcEEEEEcCCCcEEEEE
Q psy6213 5 SPVHKHGLKADNGLAQPS-RNV--FKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCI-EENHIATGATNGAVVVWN 80 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g-d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~ 80 (330)
+.+++++|+|+|+.++.+ +.. |+.|+..............+ ....|++++|+|. ++.+|++|+.||+|++||
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh----~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd 93 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH----GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 93 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTT----TTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCC----CCCCEEEEEEeeCCCCCEEEEEeCCCCEEEee
Confidence 457889999999996655 444 45555443332222221111 1233799999983 567999999999999999
Q ss_pred CCCCCCCce-----eEEecccccceeEEEEEecCCCEEEEEec--CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCC
Q psy6213 81 LGQISRSKQ-----ERVFNDHKRTVNKVSFHYVESNWLISGSQ--DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSP 153 (330)
Q Consensus 81 ~~~~~~~~~-----~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 153 (330)
+........ ...+..|.++|.+++|+| ++.++++++. ++.+++|+.++++.+..+.+|...|.+++|+|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 172 (325)
T d1pgua1 94 WTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP 172 (325)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSS
T ss_pred ecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccceeeeeccccccccccccccc
Confidence 875322211 223456888999999998 8888877654 67899999999999999999999999999999998
Q ss_pred cEEEEEecCCcEEEEecCCCccc--eeeeccCCCCeEEEEEcCC-CCEEEEEecCCcEEEEeCCCCccccceeccccceE
Q psy6213 154 YAFASVSENGTIQQWDVRRPEKC--FYQFTAHSGPIFACDWHPE-HAWLATASRDKTIKVWDLSIKPSLEYSINTIASVS 230 (330)
Q Consensus 154 ~~~~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 230 (330)
+++++++.|+.+++||.+..... ......|...|.+++|+|+ +.+|++++.||.|++||+++++.......|..++.
T Consensus 173 ~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~ 252 (325)
T d1pgua1 173 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 252 (325)
T ss_dssp CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC
T ss_pred ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccc
Confidence 87889999999999998863322 2234467788999999996 68999999999999999999876666666666665
Q ss_pred EEEEc---CCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCC--eEEEEEec-CCCEEEEeecCCeEeeeec
Q psy6213 231 RIKWR---PQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDV--VSGLAWRG-DPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 231 ~~~~~---~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~--v~~~~~~~-~~~~l~s~~~dg~i~iw~~ 301 (330)
.+.|+ |+++++ ++++ .|+.|+|||+++++. +..+..|... +..+++.+ .+.+|++++.||.|++|+.
T Consensus 253 ~~~~s~~~~dg~~l-~s~s--~D~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 253 GGIFALSWLDSQKF-ATVG--ADATIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp SCEEEEEESSSSEE-EEEE--TTSEEEEEETTTTEE-EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred cceeeeeccCCCEE-EEEe--CCCeEEEEECCCCCE-EEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 55554 678874 4555 599999999998865 6666655543 33444433 2347899999999999973
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5e-37 Score=253.04 Aligned_cols=273 Identities=15% Similarity=0.269 Sum_probs=201.9
Q ss_pred CCcccc-eEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEE
Q psy6213 2 AYLSPV-HKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVV 78 (330)
Q Consensus 2 ~H~~~v-~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 78 (330)
.|.+.| +|+ +++++++++| ||.|+|||+.+++....+..|.. .|.+++|+| +++|++|+.||.|++
T Consensus 10 GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~-------~V~~l~~s~--~~~l~s~s~D~~i~i 78 (355)
T d1nexb2 10 GHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG-------GVWALKYAH--GGILVSGSTDRTVRV 78 (355)
T ss_dssp CCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSS-------CEEEEEEET--TTEEEEEETTCCEEE
T ss_pred CcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC-------CEEEEEEcC--CCEEEEEeccccccc
Confidence 588886 554 5568885555 99999999999988877765543 469999997 468999999999999
Q ss_pred EECCCCCCCceeEEecc--cccceeEEEEEecCCCEEEEEecCCcEEEEE------------------------------
Q psy6213 79 WNLGQISRSKQERVFND--HKRTVNKVSFHYVESNWLISGSQDGTMRLFD------------------------------ 126 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d------------------------------ 126 (330)
|+... ......... +........+.+ ++.++++++.|+.|++||
T Consensus 79 w~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (355)
T d1nexb2 79 WDIKK---GCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154 (355)
T ss_dssp EETTT---TEEEEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred ccccc---ccccccccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence 99876 333222221 112222333333 444455555555555554
Q ss_pred ---------------------------------eecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCC
Q psy6213 127 ---------------------------------IRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173 (330)
Q Consensus 127 ---------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 173 (330)
+++++.+.....+...+.++.++|+++ .+++++.|+.|++||+++
T Consensus 155 ~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~- 232 (355)
T d1nexb2 155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLEN- 232 (355)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTT-
T ss_pred eeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccce-eeecccccceEEeeeccc-
Confidence 444444455555667788999999998 589999999999999998
Q ss_pred ccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEE-EEcCCCCeEEEEeecccCCe
Q psy6213 174 EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRI-KWRPQRKFHLASCSLVVDSS 252 (330)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~~~~~~~ 252 (330)
...+..+.+|...|.+++++ +++|++++.||.|++||+++..... ..+...+..+ .+++++. ++++++ |+.
T Consensus 233 ~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~-~l~~g~---d~~ 304 (355)
T d1nexb2 233 GELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDN-ILVSGS---ENQ 304 (355)
T ss_dssp CCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSS-EEEEEE---TTE
T ss_pred cccccccccccccccccccc--cceeeeeecccccccccccccceec--ccccCCceEEEEEcCCCC-EEEEEe---CCE
Confidence 67788889999999999997 4689999999999999998774332 2333444444 5566666 577776 999
Q ss_pred EEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 253 VNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 253 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
|++||+++++.....+.+|.++|.+++|+|+ .++++++.||.+++|.
T Consensus 305 i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 305 FNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp EEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred EEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence 9999999988644467789999999999987 5788899999988874
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.1e-36 Score=251.34 Aligned_cols=269 Identities=18% Similarity=0.319 Sum_probs=209.8
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEe----
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVF---- 93 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---- 93 (330)
+... ++...+|+....+.... .+ .....+...|++++|+| ++++||+|+ |+.|++||+.+ ++....+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~-~l--~~~~~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~---~~~~~~~~~~~ 103 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDV-EL--HKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSD---GSLVARLSDDS 103 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEE-EE--EEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTT---CCEEEEECC--
T ss_pred cccCCCCcEEEeCCCCCcceee-ee--EeeCCCCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecc---cceEeeecccc
Confidence 3334 88899999765443221 11 12223556689999999 999999987 89999999987 3333333
Q ss_pred --------------cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 94 --------------NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 94 --------------~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
..|...|.+++|+| ++++|++|+.||.|++||...++.+..+.+|...|.++++++++. .++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~~~ 181 (388)
T d1erja_ 104 AANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSG 181 (388)
T ss_dssp ---------------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred cccccccccccccccCCCCCEEEEEECC-CCCcceecccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 24667799999998 899999999999999999999999999999999999999999988 58999
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEc-CCCCEEEEEecCCcEEEEeCCCCccccc-------eeccccceEE
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWH-PEHAWLATASRDKTIKVWDLSIKPSLEY-------SINTIASVSR 231 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~v~~ 231 (330)
+.++.+++||.++ .........+.. ..++.++ +++++|++++.||.|++||.+++..... ...|...|.+
T Consensus 182 ~~~~~i~~~d~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 259 (388)
T d1erja_ 182 SGDRTVRIWDLRT-GQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 259 (388)
T ss_dssp ETTSEEEEEETTT-TEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred ccceeeeeeeccc-cccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEE
Confidence 9999999999997 444555554444 4455555 4889999999999999999988754322 2245778999
Q ss_pred EEEcCCCCeEEEEeecccCCeEEEEEccCCCc-----------cceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 232 IKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI-----------PLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 232 ~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
++|+|+++++ ++++ .|+.|++||+++... .......|...|.+++|+|++++|++|+.||.|++|+
T Consensus 260 l~~s~~~~~l-~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd 336 (388)
T d1erja_ 260 VVFTRDGQSV-VSGS--LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 336 (388)
T ss_dssp EEECTTSSEE-EEEE--TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred EEECCCCCEE-EEEE--CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 9999999975 4555 599999999976532 1344567889999999999999999999999999998
Q ss_pred cc
Q psy6213 301 NI 302 (330)
Q Consensus 301 ~~ 302 (330)
..
T Consensus 337 ~~ 338 (388)
T d1erja_ 337 KK 338 (388)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6e-36 Score=242.59 Aligned_cols=243 Identities=21% Similarity=0.372 Sum_probs=218.9
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
+...|++++|+| ++++|++|+.||.|++||+.+ .+....+..|...|.+++|+| ++.++++++.++.+..|+...
T Consensus 16 H~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~---~~~~~~~~~h~~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 90 (317)
T d1vyhc1 16 HRSPVTRVIFHP-VFSVMVSASEDATIKVWDYET---GDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQG 90 (317)
T ss_dssp CSSCEEEEEECS-SSSEEEEEESSSCEEEEETTT---CCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTS
T ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCC---CCEEEEEeCCCCcEEEEeeec-ccccccccccccccccccccc
Confidence 344579999999 999999999999999999988 778888999999999999998 899999999999999999998
Q ss_pred CceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 130 QESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 130 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
.+....+..+...+.++.++|+++ .+++++.|+.+++||+++ ......+..|...+.+++|+|++++|++++.|+.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~ 168 (317)
T d1vyhc1 91 FECIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168 (317)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccceeeeccCCCc-eEEeeccCcceeEeeccc-ceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence 888888888999999999999998 589999999999999998 567788889999999999999999999999999999
Q ss_pred EEeCCCCccccceeccccceEEEEEcCCCC-------------------eEEEEeecccCCeEEEEEccCCCccceEeec
Q psy6213 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRK-------------------FHLASCSLVVDSSVNVWDIRRPYIPLASFTE 270 (330)
Q Consensus 210 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 270 (330)
+|+..+.+.......+...+.++.|+|++. .++++++ .|+.|++||+++++. +..+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~-~~~~~~ 245 (317)
T d1vyhc1 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMC-LMTLVG 245 (317)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEE-EEEEEC
T ss_pred EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc--CCCEEEEEECCCCcE-EEEEeC
Confidence 999999877766777888899999988643 1355555 699999999998865 888999
Q ss_pred CCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 271 HKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 271 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
|...|.+++|+|++++|++++.||.|++|+..
T Consensus 246 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 277 (317)
T d1vyhc1 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277 (317)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred CCCCEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 99999999999999999999999999999854
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-35 Score=240.76 Aligned_cols=273 Identities=19% Similarity=0.274 Sum_probs=209.3
Q ss_pred CCcccceEEEEeeCCCeee-cC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQ-PS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~-~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
+|.+.|.+ +++++|++++ ++ ||.|+|||+.+++....+..|.. .|.+++|+| ++|++|+.|+.+++|
T Consensus 14 GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~-------~V~~v~~~~---~~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 14 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-------GVWSSQMRD---NIIISGSTDRTLKVW 82 (342)
T ss_dssp CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSS-------CEEEEEEET---TEEEEEETTSCEEEE
T ss_pred CcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCC-------CEEEEEeCC---Cccccceeccccccc
Confidence 59999876 4778899954 45 99999999999998877665543 368999987 499999999999999
Q ss_pred ECCCCCCCceeEEecccccce--------------------------------------eEEEEEecCCCEEEEEecCCc
Q psy6213 80 NLGQISRSKQERVFNDHKRTV--------------------------------------NKVSFHYVESNWLISGSQDGT 121 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i--------------------------------------~~i~~~~~~~~~l~~~~~d~~ 121 (330)
+.... ........+...+ ......+ ....+++++.|+.
T Consensus 83 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~ 158 (342)
T d2ovrb2 83 NAETG---ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFM 158 (342)
T ss_dssp ETTTT---EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETTSC
T ss_pred ccccc---cceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecc-ccceeeeecCCCe
Confidence 98652 1111111111110 1112222 5567888999999
Q ss_pred EEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEE
Q psy6213 122 MRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLAT 201 (330)
Q Consensus 122 i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 201 (330)
|++||.+..+.+..+.+|...+..+.+ ++. .+++++.||.|++||++. .+.+..+..|...+.++.++ +++|++
T Consensus 159 i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~~dg~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s 232 (342)
T d2ovrb2 159 VKVWDPETETCLHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTSGMELK--DNILVS 232 (342)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTT-CCEEEEECCCCSCEEEEEEE--TTEEEE
T ss_pred EEEeecccceeeEEEcCcccccccccC--CCC-EEEEEeCCCeEEEeeccc-ceeeeEecccccceeEEecC--CCEEEE
Confidence 999999999888888888777666555 555 699999999999999998 66788888999999988876 469999
Q ss_pred EecCCcEEEEeCCCCcccccee---ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee-----cCCC
Q psy6213 202 ASRDKTIKVWDLSIKPSLEYSI---NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT-----EHKD 273 (330)
Q Consensus 202 ~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~-----~~~~ 273 (330)
++.||.|++||+...+...... .+...+.++.++++ ++++++ .||.|++||+++++. +..+. +|..
T Consensus 233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~s--~Dg~i~iwd~~tg~~-i~~~~~~~~~~~~~ 306 (342)
T d2ovrb2 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN---FVITSS--DDGTVKLWDLKTGEF-IRNLVTLESGGSGG 306 (342)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS---EEEEEE--TTSEEEEEETTTCCE-EEEEEECTTGGGTC
T ss_pred EcCCCEEEEEecccccccccccccceeeeceeecccCCC---eeEEEc--CCCEEEEEECCCCCE-EEEEecccCCCCCC
Confidence 9999999999998875543333 34566777777654 466666 699999999999876 55443 5777
Q ss_pred CeEEEEEecCCCEEEEeecCCe----Eeeeec
Q psy6213 274 VVSGLAWRGDPQLFIASSRVSI----IPRAKN 301 (330)
Q Consensus 274 ~v~~~~~~~~~~~l~s~~~dg~----i~iw~~ 301 (330)
.|++++|+|++.+|++|+.||+ |++|+.
T Consensus 307 ~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp EEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence 8999999999999999999985 888864
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.7e-36 Score=239.33 Aligned_cols=264 Identities=15% Similarity=0.156 Sum_probs=203.5
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.|.++|++++|+| +++++ ||.|++||+.++. .. +...|.++++++ +..+++++.|+++++|+
T Consensus 11 gH~~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~~~-----~~-------h~~~V~~~~~~~--~~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 11 GHNKGITALTVNP---LISGSYDGRIMEWSSSSMH-----QD-------HSNLIVSLDNSK--AQEYSSISWDDTLKVNG 73 (287)
T ss_dssp CCSSCEEEEETTT---TEEEETTSCEEETTTTEEE-----CC-------CCSCEEEEECCS--TTCCEEEETTTEEEETT
T ss_pred CCCCceEEEEECc---EEEEeCCCeEEEEECCCCC-----CC-------CCCCEEEEEecC--CCeEEEEeecccccccc
Confidence 5999999999987 66666 9999999987643 11 233478999986 45688999999999998
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 160 (330)
... . .....+..+.+++ ++..+++ +.++.+.+|+..+++.+..+..+ .++ .+++++++. +++++
T Consensus 74 ~~~---~-------~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~-~~v~~ 137 (287)
T d1pgua2 74 ITK---H-------EFGSQPKVASANN-DGFTAVL-TNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNY-VAVGL 137 (287)
T ss_dssp EEE---E-------ECSSCEEEEEECS-SSEEEEE-ETTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSE-EEEEE
T ss_pred ccc---c-------ccccceeeeeecc-CCceEEE-eecccceeeeccceeeeeecccc-cee--eeeeccCcc-eeeec
Confidence 754 1 1234566778875 5555554 55678999999988888877643 344 456677774 55555
Q ss_pred cC-CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc-ceeccccceEEEEEcCCC
Q psy6213 161 EN-GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQR 238 (330)
Q Consensus 161 ~d-g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~ 238 (330)
.+ +.+++|++............|...+++++|+|++.+|++++.||.|++||+.+++... ....|..+|.+++|+|.+
T Consensus 138 ~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~ 217 (287)
T d1pgua2 138 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 217 (287)
T ss_dssp TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC
T ss_pred cccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccc
Confidence 55 5799999986444344444578899999999999999999999999999998875533 345678899999999854
Q ss_pred C---------eEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeec
Q psy6213 239 K---------FHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 239 ~---------~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
. .++++++ .|+.|++||++++...+..+.+|...|++++|+|++ .|++++.||.|++|+.
T Consensus 218 ~~~~~~~~~~~~l~sgs--~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 218 KGANEEEIEEDLVATGS--LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ------CCSCCEEEEEE--TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred cccccccCCCCeeEeec--CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 2 2466776 799999999988766677788999999999999986 5889999999999974
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-35 Score=241.15 Aligned_cols=246 Identities=15% Similarity=0.171 Sum_probs=190.9
Q ss_pred cccceEEEEee--CCCeeecC--CCeEEEEEcCCcceeeeeceeecc-ccccccceeeeeecccCCcEEEEEcC--CCcE
Q psy6213 4 LSPVHKHGLKA--DNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGK-NINLNFSCNDVAWSCIEENHIATGAT--NGAV 76 (330)
Q Consensus 4 ~~~v~~~~~s~--~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i 76 (330)
...|++++|+| +|+++++| ||+|+|||+..++.......+... ...+..+|.+++|+| ++.++++++. ++.+
T Consensus 63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~ 141 (325)
T d1pgua1 63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFG 141 (325)
T ss_dssp TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSE
T ss_pred CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceE
Confidence 56899999998 55676655 999999999876554444333221 223445689999999 8888877654 6789
Q ss_pred EEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee---ecCCCCeEEEEEcCCCC
Q psy6213 77 VVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF---HSNTESVRDVEFNPHSP 153 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 153 (330)
.+|+.++ .+....+.+|...|.+++|+|.+..++++++.|+.+++||....+..... ..+...|.+++|+|++.
T Consensus 142 ~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~ 218 (325)
T d1pgua1 142 VFISWDS---GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG 218 (325)
T ss_dssp EEEETTT---CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred EEEeecc---cccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccc
Confidence 9999987 77888889999999999999955567889999999999999877665544 34677899999999866
Q ss_pred cEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEc---CCCCEEEEEecCCcEEEEeCCCCccccceeccc--cc
Q psy6213 154 YAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWH---PEHAWLATASRDKTIKVWDLSIKPSLEYSINTI--AS 228 (330)
Q Consensus 154 ~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~ 228 (330)
.++++++.||.|++||+++ .+.+..+.+|..++.++.|+ |++++|++++.|+.|+|||+++++.+.....+. ..
T Consensus 219 ~~l~s~~~d~~i~iwd~~~-~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (325)
T d1pgua1 219 EFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG 297 (325)
T ss_dssp CEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred eeccccccccceeeeeecc-ccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCccc
Confidence 6899999999999999998 66778888888887776666 689999999999999999999886654443332 23
Q ss_pred eE--EEEEcCCCCeEEEEeecccCCeEEEEEc
Q psy6213 229 VS--RIKWRPQRKFHLASCSLVVDSSVNVWDI 258 (330)
Q Consensus 229 v~--~~~~~~~~~~l~~~~~~~~~~~i~i~d~ 258 (330)
+. ++.+.+++ + +++++ .||.|++||+
T Consensus 298 ~~~~~~~~~~~~-~-l~s~s--~dg~i~vwdl 325 (325)
T d1pgua1 298 NQQVGVVATGNG-R-IISLS--LDGTLNFYEL 325 (325)
T ss_dssp GCEEEEEEEETT-E-EEEEE--TTSCEEEEET
T ss_pred CeEEEEEECCCC-E-EEEEE--CCCEEEEEEC
Confidence 33 34444443 3 55566 6999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.4e-34 Score=239.01 Aligned_cols=280 Identities=14% Similarity=0.175 Sum_probs=193.8
Q ss_pred CCcccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeecee----ecccc-ccccceeeeeecccCCcEEEEEcCCC
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLR----VGKNI-NLNFSCNDVAWSCIEENHIATGATNG 74 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~----~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg 74 (330)
+|.+.|+++++++ ++ ++++ |+.|+|||..+.+........ ..... .+......+..++.+..++++++.||
T Consensus 12 ~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg 89 (393)
T d1sq9a_ 12 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 89 (393)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred cccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence 6999999999874 56 6666 999999998765422111110 00000 00011123333333456788999999
Q ss_pred cEEEEECCCCCCCceeEE-------ecccccceeEEEEEecC----CCEEEEEecCCcEEEEEeecCce-----------
Q psy6213 75 AVVVWNLGQISRSKQERV-------FNDHKRTVNKVSFHYVE----SNWLISGSQDGTMRLFDIRCQES----------- 132 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~-------~~~~~~~i~~i~~~~~~----~~~l~~~~~d~~i~i~d~~~~~~----------- 132 (330)
.|++|++........... ...+...+..++|.+.. +.++++++.||.+++|++.....
T Consensus 90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 169 (393)
T d1sq9a_ 90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169 (393)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence 999999865332222111 12345667788887632 46889999999999999863311
Q ss_pred -------eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee------eeccCCCCeEEEEEcCCCCEE
Q psy6213 133 -------TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY------QFTAHSGPIFACDWHPEHAWL 199 (330)
Q Consensus 133 -------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l 199 (330)
......+...+.+++|+|++ ++++|+.||.|++||+++. +++. .+.+|..+|++++|+|+|++|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 246 (393)
T d1sq9a_ 170 TLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTL-RPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246 (393)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTT-EEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred ceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeeccc-ccccccccccccccccceEEEccccccccee
Confidence 11112344568899999997 6899999999999999873 3333 445689999999999999999
Q ss_pred EEEecCCc---EEEEeCCCCccccc-------------eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 200 ATASRDKT---IKVWDLSIKPSLEY-------------SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 200 ~~~~~dg~---i~i~d~~~~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
++|+.|++ |++||+++++.... ...|...|++++|+|++++ +++++ .|++|++||+++++.
T Consensus 247 ~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~-l~S~s--~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAG--WDGKLRFWDVKTKER 323 (393)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEE--TTSEEEEEETTTTEE
T ss_pred eeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCe-eEEEC--CCCEEEEEECCCCCE
Confidence 99999875 99999988754322 2357889999999999997 56666 699999999999865
Q ss_pred cceEeecCCCCeE----EEEEecCCCEEEEe
Q psy6213 264 PLASFTEHKDVVS----GLAWRGDPQLFIAS 290 (330)
Q Consensus 264 ~~~~~~~~~~~v~----~~~~~~~~~~l~s~ 290 (330)
+..+.+|.+.|. .++|+|++..++++
T Consensus 324 -~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 324 -ITTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp -EEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred -EEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence 888999976654 35566655554433
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.6e-34 Score=231.11 Aligned_cols=235 Identities=12% Similarity=0.149 Sum_probs=187.8
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEe-cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVF-NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ 130 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~ 130 (330)
..|++++|+| ++++|++|+.||.|++||+++ ++....+ ..|...|.+++|+| ++. +++++.|+.+++|+....
T Consensus 13 ~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~---~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~~~~~~~~ 86 (299)
T d1nr0a2 13 KAITALSSSA-DGKTLFSADAEGHINSWDIST---GISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLKVVPAGGS 86 (299)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTT---CCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEEEECSSSS
T ss_pred CCcEEEEECC-CCCEEEEEcCCCeEEEEECCC---CcEEEEEcCCCCCcEEEEEeec-cce-eecccceeeEEEeccCCc
Confidence 3479999999 999999999999999999987 5666665 46899999999998 665 556677999999998654
Q ss_pred ce---eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCc
Q psy6213 131 ES---TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKT 207 (330)
Q Consensus 131 ~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 207 (330)
.. ......+...+.+++|+|++.. +++ +.++.+++|+... ..... ....+.+++|+|++++|++++.||.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~s~~g~~-~~~-~~~~~i~~~~~~~---~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~ 159 (299)
T d1nr0a2 87 GVDSSKAVANKLSSQPLGLAVSADGDI-AVA-ACYKHIAIYSHGK---LTEVP--ISYNSSCVALSNDKQFVAVGGQDSK 159 (299)
T ss_dssp SSCTTSCCEEECSSCEEEEEECTTSSC-EEE-EESSEEEEEETTE---EEEEE--CSSCEEEEEECTTSCEEEEEETTSE
T ss_pred ccccccccccccccccccccccccccc-ccc-ccccccccccccc---ccccc--ccccccccccccccccccccccccc
Confidence 32 2223346778999999999983 444 4567899999653 12222 3456789999999999999999999
Q ss_pred EEEEeCCCCccc-cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc--ceEeecCCCCeEEEEEecCC
Q psy6213 208 IKVWDLSIKPSL-EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP--LASFTEHKDVVSGLAWRGDP 284 (330)
Q Consensus 208 i~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~ 284 (330)
+++||+++.+.. .....+..+|.+++|+|+++++++ ++ .++.|++||+.++... ...+..|..+|++++|+|++
T Consensus 160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~--~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 236 (299)
T d1nr0a2 160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA-TD--QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 236 (299)
T ss_dssp EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE-EE--TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred ccccccccccccccccccccccccccccccccccccc-cc--cccccccccccccccccccccccccccccccccccccc
Confidence 999999877543 344567889999999999998554 44 5999999999876542 34566789999999999999
Q ss_pred CEEEEeecCCeEeeeecc
Q psy6213 285 QLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 285 ~~l~s~~~dg~i~iw~~~ 302 (330)
++|++++.||.|++|+..
T Consensus 237 ~~l~sgs~dg~i~iwd~~ 254 (299)
T d1nr0a2 237 VRLATGSLDNSVIVWNMN 254 (299)
T ss_dssp SEEEEEETTSCEEEEETT
T ss_pred cceEEEcCCCEEEEEECC
Confidence 999999999999999754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.8e-33 Score=223.49 Aligned_cols=268 Identities=20% Similarity=0.306 Sum_probs=208.9
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
.|...|+|++ +||++|++| ||.|+|||+++++....+..|... |.+++| ++++|++|+.||.|++|
T Consensus 13 ~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~-------V~~v~~---~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 13 ETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS-------VLCLQY---DERVIITGSSDSTVRVW 80 (293)
T ss_dssp SSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC-------EEEEEC---CSSEEEEEETTSCEEEE
T ss_pred CCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC-------Eeeeec---ccceeeccccccccccc
Confidence 4678888865 578885555 999999999999988877655443 578877 45799999999999999
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce---eeeeecCCCCeEEEEEcCCCCcEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES---TKIFHSNTESVRDVEFNPHSPYAF 156 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~ 156 (330)
++.. .........+.... ..+.+ ....++++..++.+.+||..+... ...+..+...+..+.+.+. .+
T Consensus 81 ~~~~---~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~ 151 (293)
T d1p22a2 81 DVNT---GEMLNTLIHHCEAV--LHLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YI 151 (293)
T ss_dssp ESSS---CCEEEEECCCCSCE--EEEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EE
T ss_pred cccc---cccccccccccccc--ccccc-cccceeecccccceeEeeccccccccccccccccccccccceeccc---cc
Confidence 9987 44444444333333 33443 677899999999999999987654 3344567788888877654 47
Q ss_pred EEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcC
Q psy6213 157 ASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRP 236 (330)
Q Consensus 157 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 236 (330)
++++.|+.+++||+++ .+.+..+.++...+..+.++ +.++++++.||.|++||+++.........+...+.. +++
T Consensus 152 ~~~s~d~~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~ 226 (293)
T d1p22a2 152 VSASGDRTIKVWNTST-CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRF 226 (293)
T ss_dssp EEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EEC
T ss_pred ccccCCCceeeecCCC-CcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccc
Confidence 8889999999999998 66778888888888888776 568999999999999999998776666666666665 456
Q ss_pred CCCeEEEEeecccCCeEEEEEccCC--------CccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRP--------YIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
++.+ +++++ .||.|++||+... ..++..+.+|.+.|++++| ++.+|++++.||+|++|+
T Consensus 227 ~~~~-l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 227 DNKR-IVSGA--YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CSSE-EEEEE--TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred cceE-EEEEc--CCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 6666 55555 6999999998532 2336778899999999999 567899999999999995
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.8e-34 Score=233.10 Aligned_cols=287 Identities=14% Similarity=0.117 Sum_probs=207.7
Q ss_pred CCcccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
+|.+.|++|+|+|++++|++| ||+|+|||++.+.....+... ..+..+|.+++|+|.++.+|++|+.||.|++|
T Consensus 9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~----~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS----LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE----EECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe----cCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence 699999999999999995544 999999999876543333221 12344579999998556789999999999999
Q ss_pred ECCCCCCCceeEEeccccccee-EEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee----c--CCCCeEEEEEcCCC
Q psy6213 80 NLGQISRSKQERVFNDHKRTVN-KVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH----S--NTESVRDVEFNPHS 152 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~--~~~~v~~~~~~~~~ 152 (330)
+... .........+..... ...+.+ +...+++++.++.+++||++++....... . .........+.+.+
T Consensus 85 ~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (342)
T d1yfqa_ 85 DLIG---SPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp CSSS---SSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred eccc---cccccccccccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence 9987 444444444444443 444444 88999999999999999997654433222 1 12234556677777
Q ss_pred CcEEEEEecCCcEEEEecCCCccce--eeeccCCCCeEEEEEcC-CCCEEEEEecCCcEEEEeCCCCccc----------
Q psy6213 153 PYAFASVSENGTIQQWDVRRPEKCF--YQFTAHSGPIFACDWHP-EHAWLATASRDKTIKVWDLSIKPSL---------- 219 (330)
Q Consensus 153 ~~~~~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~---------- 219 (330)
. .+++++.|+.|++||++...... .....+...+.+..+.+ ++..+++++.||.+.+|+.......
T Consensus 161 ~-~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~ 239 (342)
T d1yfqa_ 161 S-RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp S-EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred C-ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence 7 68999999999999998643322 22233445566666554 6788999999999999998654221
Q ss_pred -----cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 220 -----EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 220 -----~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
.....+...+++++|+|++++ +++++ .||.|++||+++++. +..+..+ ..+..++|+|++++|++++.|+
T Consensus 240 ~~~~~~~~~~~~~~v~~l~~sp~~~~-lasg~--~Dg~v~vWD~~~~~~-l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd 314 (342)
T d1yfqa_ 240 CHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAG--SDGIISCWNLQTRKK-IKNFAKF-NEDSVVKIACSDNILCLATSDD 314 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCC-EEEEE--TTSCEEEEETTTTEE-EEECCCC-SSSEEEEEEECSSEEEEEEECT
T ss_pred eeeeccCCCcccccceeEEecCCccE-EEEEC--CCCEEEEEECCCCcE-EEEecCC-CCCEEEEEEeCCCEEEEEEcCC
Confidence 112234567899999999997 55555 699999999998876 5555433 3455678888999999999999
Q ss_pred eEeeeecc
Q psy6213 295 IIPRAKNI 302 (330)
Q Consensus 295 ~i~iw~~~ 302 (330)
.+++|...
T Consensus 315 ~~~~~~~~ 322 (342)
T d1yfqa_ 315 TFKTNAAI 322 (342)
T ss_dssp HHHHCSSS
T ss_pred cEEEeeee
Confidence 99998754
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.8e-31 Score=218.61 Aligned_cols=241 Identities=14% Similarity=0.278 Sum_probs=203.4
Q ss_pred cccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeec
Q psy6213 50 LNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRC 129 (330)
Q Consensus 50 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~ 129 (330)
+...|++++|+| ++++|++|+.||.|++||+.+ .+....+..|...|.+++|+| ++.++++|+.|+.+++|+...
T Consensus 54 H~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~---~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~~ 128 (340)
T d1tbga_ 54 HLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYT---TNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT---TEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEEESSS
T ss_pred CCCCEEEEEECC-CCCEEEEEECCCceeeeeccc---ceeEEEEecccccEEeeEeec-cceeeeeecccceeecccccc
Confidence 455689999999 999999999999999999988 788888999999999999998 899999999999999999765
Q ss_pred Cc----eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC
Q psy6213 130 QE----STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD 205 (330)
Q Consensus 130 ~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 205 (330)
.. ....+.+|..........++. .+.....+.....++... .........+...+....+.+.+.++++++.|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 205 (340)
T d1tbga_ 129 REGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIET-GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp SCSCCCEEEEECCCSSCEEEEEEEETT--EEEEEETTTEEEEEETTT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cccccccceeccccccccccccccccc--cccccccccccccccccc-ccccccccccceeEeeeccccccceeEEeecC
Confidence 43 344556666666666555554 577888899999998876 44455566678889999999999999999999
Q ss_pred CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEe--ecCCCCeEEEEEecC
Q psy6213 206 KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASF--TEHKDVVSGLAWRGD 283 (330)
Q Consensus 206 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~ 283 (330)
+.+++||+++++.......|...|++++|+|++++ +++++ .|+.|++||++.... ...+ ..+...|.+++|+|+
T Consensus 206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~-l~s~s--~d~~i~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~ 281 (340)
T d1tbga_ 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA-FATGS--DDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECSS
T ss_pred ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCE-EEEEe--CCCeEEEEeeccccc-ccccccccccCceEEEEECCC
Confidence 99999999998777777778899999999999997 45555 599999999998765 3333 456678999999999
Q ss_pred CCEEEEeecCCeEeeeecc
Q psy6213 284 PQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 284 ~~~l~s~~~dg~i~iw~~~ 302 (330)
+++|++|+.||.|++|+..
T Consensus 282 ~~~l~~g~~dg~i~iwd~~ 300 (340)
T d1tbga_ 282 GRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp SCEEEEEETTSCEEEEETT
T ss_pred CCEEEEEECCCEEEEEECC
Confidence 9999999999999999854
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=1e-31 Score=221.90 Aligned_cols=271 Identities=11% Similarity=0.048 Sum_probs=206.0
Q ss_pred ceEEEEee-CCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCC--cEEEEECC
Q psy6213 7 VHKHGLKA-DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG--AVVVWNLG 82 (330)
Q Consensus 7 v~~~~~s~-~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~iw~~~ 82 (330)
+.+-.||| ||++++.+ +|.|++||.+++...+. .| ...|.+++|+| ++++|++++.+. .|++||.+
T Consensus 5 ~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~--~~-------~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~ 74 (360)
T d1k32a3 5 KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PE-------PLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYR 74 (360)
T ss_dssp GGEEEEEECGGGCEEEEETTEEEEECTTSSBEEEC--SC-------CSCEEEEEECS-SSEEEEEEEETTEEEEEEEETT
T ss_pred hhcccccCCCCCEEEEEECCeEEEEECCCCcEEEc--cC-------CCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECC
Confidence 45678999 99997777 99999999988776543 12 23479999999 999888776553 69999998
Q ss_pred CCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe--
Q psy6213 83 QISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS-- 160 (330)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-- 160 (330)
+ .....+..|...+.+++|+| ++++|++++.++.+++|++.+++....+..+...+.+++|+|++++ |+.+.
T Consensus 75 ~----~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-la~~~~~ 148 (360)
T d1k32a3 75 T----GKAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF-IAYGFPL 148 (360)
T ss_dssp T----CCEEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE-EEEEEEE
T ss_pred C----CcEEEeeCCCceEEeeeecc-cccccceeccccccccccccccceeeeeecccccccchhhccceee-eeeeccc
Confidence 6 34456778999999999999 9999999999999999999999998889888899999999999995 54332
Q ss_pred --------cCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccc-------cce---
Q psy6213 161 --------ENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSL-------EYS--- 222 (330)
Q Consensus 161 --------~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~--- 222 (330)
.++.+++||+.+ ++ ...+..+...+..+.|+|+|++|++++.++.+.+||....... ...
T Consensus 149 ~~~~~~~~~~~~~~v~d~~~-~~-~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 226 (360)
T d1k32a3 149 KHGETDGYVMQAIHVYDMEG-RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226 (360)
T ss_dssp CSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESS
T ss_pred cccceeeccccceeeecccc-Cc-eeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecc
Confidence 345689999987 33 3344457778899999999999999999999999986543110 000
Q ss_pred ---------------------------------eccccceEEEEEcCCCCeE------------EEEeecccCCeEEEEE
Q psy6213 223 ---------------------------------INTIASVSRIKWRPQRKFH------------LASCSLVVDSSVNVWD 257 (330)
Q Consensus 223 ---------------------------------~~~~~~v~~~~~~~~~~~l------------~~~~~~~~~~~i~i~d 257 (330)
.........+...+++... +++++ .++.+++||
T Consensus 227 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d 304 (360)
T d1k32a3 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP--EKGVLLKYD 304 (360)
T ss_dssp TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCC--CCEEEEEEE
T ss_pred cCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecC--CCCEEEEEE
Confidence 0001123344444443322 22222 578999999
Q ss_pred ccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 258 IRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 258 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+.+++. . .|.+.|.+++|+|||++|++++.||.|++|+..
T Consensus 305 ~~~~~~--~---~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~ 344 (360)
T d1k32a3 305 VKTRKV--T---EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344 (360)
T ss_dssp TTTCCE--E---EEEEEEEEEEECTTSCEEEEEETTSCEEEEESS
T ss_pred CCCCeE--E---EecCCcCEEEECCCCCEEEEEECCCeEEEEECC
Confidence 988753 2 334569999999999999999999999999754
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.9e-31 Score=215.05 Aligned_cols=231 Identities=22% Similarity=0.344 Sum_probs=176.9
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
++|++| ++++|++|+.||.|++||+.+ .+.+..+.+|.++|.+++|+| +++|++|+.|+.|++|+....+..
T Consensus 16 itc~~~---~~~~l~tgs~Dg~i~vWd~~~---~~~~~~l~~H~~~V~~l~~s~--~~~l~s~s~D~~i~iw~~~~~~~~ 87 (355)
T d1nexb2 16 ITCLQF---EDNYVITGADDKMIRVYDSIN---KKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGCCT 87 (355)
T ss_dssp EEEEEE---ETTEEEEEETTTEEEEEETTT---TEEEEEEECCSSCEEEEEEET--TTEEEEEETTCCEEEEETTTTEEE
T ss_pred EEEEEE---CCCEEEEEeCCCeEEEEECCC---CcEEEEEECCCCCEEEEEEcC--CCEEEEEecccccccccccccccc
Confidence 355555 568999999999999999988 788999999999999999996 468999999999999999887765
Q ss_pred eeeecCCC--CeEEEEEcCCCCcEEEEEecCCcEEEEecCCC--------------------------------------
Q psy6213 134 KIFHSNTE--SVRDVEFNPHSPYAFASVSENGTIQQWDVRRP-------------------------------------- 173 (330)
Q Consensus 134 ~~~~~~~~--~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~-------------------------------------- 173 (330)
........ ......+.+++. .+++++.|+.|++||+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 166 (355)
T d1nexb2 88 HVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 166 (355)
T ss_dssp EEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEE
T ss_pred cccccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccc
Confidence 55443332 233445556655 4667777777777776431
Q ss_pred ------------------------ccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccce
Q psy6213 174 ------------------------EKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASV 229 (330)
Q Consensus 174 ------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 229 (330)
.+.+.....+...+.++.++|++.++++++.|+.|++||.+++........|...|
T Consensus 167 ~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v 246 (355)
T d1nexb2 167 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 246 (355)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCC
T ss_pred cccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccc
Confidence 12223334466678889999999999999999999999999997777777889999
Q ss_pred EEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEE-EecCCCEEEEeecCCeEeeeecc
Q psy6213 230 SRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLA-WRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+++++++ + +++++ .||.|++||+++... .+..|...+.++. +++++++|++| .||.|++|+..
T Consensus 247 ~~~~~~~~--~-l~~~~--~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~ 311 (355)
T d1nexb2 247 GLLRLSDK--F-LVSAA--ADGSIRGWDANDYSR---KFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLR 311 (355)
T ss_dssp CEEEECSS--E-EEEEC--TTSEEEEEETTTCCE---EEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETT
T ss_pred cccccccc--e-eeeee--cccccccccccccce---ecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECC
Confidence 99999764 4 56665 699999999987753 4555666666654 56677766655 59999999854
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.2e-31 Score=214.17 Aligned_cols=247 Identities=11% Similarity=0.029 Sum_probs=182.7
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE 131 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 131 (330)
..|++++|+| ++++||+|+.||+|++||++.............|..+|.+++|+|.++.+|++|+.||.|++|++....
T Consensus 12 d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~ 90 (342)
T d1yfqa_ 12 DYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp SCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred CCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc
Confidence 3479999999 999999999999999999976433334444457999999999998667789999999999999999887
Q ss_pred eeeeeecCCCCeE-EEEEcCCCCcEEEEEecCCcEEEEecCCCccceee---ecc--CCCCeEEEEEcCCCCEEEEEecC
Q psy6213 132 STKIFHSNTESVR-DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ---FTA--HSGPIFACDWHPEHAWLATASRD 205 (330)
Q Consensus 132 ~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~---~~~--~~~~i~~~~~~~~~~~l~~~~~d 205 (330)
.......+..... ...+.++.. .+++++.++.+++||++........ ... .........+.+.+..+++++.|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (342)
T d1yfqa_ 91 SFQALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169 (342)
T ss_dssp SEEECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEEST
T ss_pred ccccccccccccccccccccccc-cccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCC
Confidence 7766655544443 444445555 7999999999999998763322211 111 12334556777889999999999
Q ss_pred CcEEEEeCCCCccccc---eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc--------------ceEe
Q psy6213 206 KTIKVWDLSIKPSLEY---SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP--------------LASF 268 (330)
Q Consensus 206 g~i~i~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~--------------~~~~ 268 (330)
+.|++||++....... ............+.+.....+++++ .||.+.+|++...... ....
T Consensus 170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
T d1yfqa_ 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247 (342)
T ss_dssp TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC
T ss_pred CcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec--CCCeEEEEEecCCcceeeccccceeeeeeeccCC
Confidence 9999999987754322 2233445666666665444566666 6999999998654321 1112
Q ss_pred ecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 269 TEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 269 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
..|...|++++|+|++++|++|+.||.|++|+..
T Consensus 248 ~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~ 281 (342)
T d1yfqa_ 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CcccccceeEEecCCccEEEEECCCCEEEEEECC
Confidence 3466789999999999999999999999999854
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=3.5e-30 Score=215.68 Aligned_cols=246 Identities=14% Similarity=0.161 Sum_probs=174.2
Q ss_pred ccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC---ceeEEecccccceeEEEE------EecCCCEEEEEecC
Q psy6213 49 NLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS---KQERVFNDHKRTVNKVSF------HYVESNWLISGSQD 119 (330)
Q Consensus 49 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~i~~i~~------~~~~~~~l~~~~~d 119 (330)
.+...|.++++++ +++++++.|+.|++||....+.. ........|...+..+.. .+.+..++++++.|
T Consensus 12 ~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d 88 (393)
T d1sq9a_ 12 AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS 88 (393)
T ss_dssp CSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred cccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCC
Confidence 4455678888764 68999999999999997653211 112222334433332222 11123567899999
Q ss_pred CcEEEEEeecCceeeeee----------cCCCCeEEEEEcCCCC----cEEEEEecCCcEEEEecCCCcc----------
Q psy6213 120 GTMRLFDIRCQESTKIFH----------SNTESVRDVEFNPHSP----YAFASVSENGTIQQWDVRRPEK---------- 175 (330)
Q Consensus 120 ~~i~i~d~~~~~~~~~~~----------~~~~~v~~~~~~~~~~----~~~~~~~~dg~i~i~d~~~~~~---------- 175 (330)
|.|++|++........+. .+...+..++|.++.. ..+++++.||.+++|++.....
T Consensus 89 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 168 (393)
T d1sq9a_ 89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 168 (393)
T ss_dssp SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeec
Confidence 999999987654322211 1345577888877642 3588999999999999864221
Q ss_pred -------ceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc------ceeccccceEEEEEcCCCCeEE
Q psy6213 176 -------CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE------YSINTIASVSRIKWRPQRKFHL 242 (330)
Q Consensus 176 -------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~ 242 (330)
.......+...+.+++|+|++ +|++|+.||.|++||+.+++... ....|..+|.+++|+|++++|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 247 (393)
T d1sq9a_ 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247 (393)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEE
T ss_pred cceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceee
Confidence 111122345568899999997 89999999999999999875432 2345778999999999999755
Q ss_pred EEeecccCC---eEEEEEccCCCccceEe-------------ecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 243 ASCSLVVDS---SVNVWDIRRPYIPLASF-------------TEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 243 ~~~~~~~~~---~i~i~d~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
+++. |+ .|++||+++++. +..+ .+|.+.|++++|+||+++|++++.|++|++|+..
T Consensus 248 sgs~---D~t~~~i~lwd~~~g~~-~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 248 IAHD---SNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 319 (393)
T ss_dssp EEEE---ETTEEEEEEEETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred eecC---CCCcceeeeccccccee-eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence 5443 65 599999988764 4433 4799999999999999999999999999999854
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.8e-29 Score=204.42 Aligned_cols=247 Identities=19% Similarity=0.307 Sum_probs=183.4
Q ss_pred EEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEec
Q psy6213 29 FLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV 108 (330)
Q Consensus 29 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 108 (330)
|+..+.+....++.|...+ .+ ++++ ++++||+|+.||.|++||+.+ ++++..+.+|...|.+++|+|
T Consensus 1 W~~~~~~~~~~l~GH~~~V-------~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~---~~~~~~~~~h~~~V~~v~~~~- 67 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHV-------IT-CLQF-CGNRIVSGSDDNTLKVWSAVT---GKCLRTLVGHTGGVWSSQMRD- 67 (342)
T ss_dssp HHHSCCCCCEEEECSTTSC-------EE-EEEE-ETTEEEEEETTSCEEEEETTT---CCEEEECCCCSSCEEEEEEET-
T ss_pred CCCCCCCcCEEECCcCCce-------EE-EEEE-CCCEEEEEeCCCeEEEEECCC---CCEEEEEeCCCCCEEEEEeCC-
Confidence 4444444455555554433 33 3555 688999999999999999988 788899999999999999985
Q ss_pred CCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeE--------------------------------------EEEEcC
Q psy6213 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVR--------------------------------------DVEFNP 150 (330)
Q Consensus 109 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~--------------------------------------~~~~~~ 150 (330)
++|++|+.|+.+++|+............+...+. .....+
T Consensus 68 --~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (342)
T d2ovrb2 68 --NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145 (342)
T ss_dssp --TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred --CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecc
Confidence 4899999999999999765443322221111111 111222
Q ss_pred CCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceE
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVS 230 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 230 (330)
... .++.++.|+.+++||.+. ...+..+.+|...+..+.+ ++.++++++.||.|++||++..+.......+...+.
T Consensus 146 ~~~-~~~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~ 221 (342)
T d2ovrb2 146 DGR-RVVSGAYDFMVKVWDPET-ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 221 (342)
T ss_dssp CSS-CEEEEETTSCEEEEEGGG-TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred ccc-eeeeecCCCeEEEeeccc-ceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEeccccccee
Confidence 333 478888999999999987 5667778888776665554 688999999999999999999877777777888898
Q ss_pred EEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec---CCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 231 RIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE---HKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 231 ~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
++.++++ + +++++ .|+.|++||+...+. ...+.. |...+.++.+ +++++++++.||.|++|+..
T Consensus 222 ~~~~~~~--~-l~s~s--~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 222 GMELKDN--I-LVSGN--ADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLK 288 (342)
T ss_dssp EEEEETT--E-EEEEE--TTSCEEEEETTTCCE-EEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETT
T ss_pred EEecCCC--E-EEEEc--CCCEEEEEecccccc-cccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECC
Confidence 8888764 4 66666 699999999988765 444443 4556666666 56799999999999999854
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.97 E-value=8.7e-27 Score=187.38 Aligned_cols=265 Identities=12% Similarity=0.080 Sum_probs=204.6
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEE-EEEcCCCcEEEEECCCCCCCceeEEeccc
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHI-ATGATNGAVVVWNLGQISRSKQERVFNDH 96 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 96 (330)
++.+ ++.|.+||+++++....+.... .+..++|+| ++++| ++++.++.|++||+.+ .+.+..+..+
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g~--------~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t---~~~~~~~~~~ 73 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVGS--------NPMGAVISP-DGTKVYVANAHSNDVSIIDTAT---NNVIATVPAG 73 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSS--------SEEEEEECT-TSSEEEEEEGGGTEEEEEETTT---TEEEEEEECS
T ss_pred EEECCCCEEEEEECCCCeEEEEEECCC--------CceEEEEeC-CCCEEEEEECCCCEEEEEECCC---Cceeeeeecc
Confidence 4445 9999999999998877665432 247899999 88876 5677889999999988 6777777666
Q ss_pred ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc
Q psy6213 97 KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC 176 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 176 (330)
. .+..+.|++++...++++..++.+.+|+..+++....+.. .....++.|+|++..+++++..++.+.+|+..+ ...
T Consensus 74 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~-~~~ 150 (301)
T d1l0qa2 74 S-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-KAV 150 (301)
T ss_dssp S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEE
T ss_pred c-cccccccccccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccc-cce
Confidence 4 4688999984444555667788999999999888888774 456789999999997777888889999999987 455
Q ss_pred eeeeccCCCCeEEEEEcCCCCEEEEEecC-CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEE
Q psy6213 177 FYQFTAHSGPIFACDWHPEHAWLATASRD-KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNV 255 (330)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i 255 (330)
...+. +...+..+.++|+++.+++++.+ +.+.+|+.... ...........+..++|++++..++++.....++.|++
T Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v 228 (301)
T d1l0qa2 151 INTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (301)
T ss_dssp EEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred eeecc-cCCCceEEEeeccccceeeecccccccccccccce-eeeecccccCCcceeeccccccccccccccceeeeeee
Confidence 55555 34567899999999988888765 55667766655 44444555567888999999998777665324678999
Q ss_pred EEccCCCccceEeecCCCCeEEEEEecCCCEE-EEeecCCeEeeeecc
Q psy6213 256 WDIRRPYIPLASFTEHKDVVSGLAWRGDPQLF-IASSRVSIIPRAKNI 302 (330)
Q Consensus 256 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~iw~~~ 302 (330)
||+.+++. +..+.. ...+.+++|+|||++| ++++.|+.|++|+..
T Consensus 229 ~D~~t~~~-~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 229 IDTGTNKI-TARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTA 274 (301)
T ss_dssp EETTTTEE-EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred eecCCCeE-EEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 99998875 555544 3568999999999977 577789999999854
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.7e-28 Score=195.28 Aligned_cols=229 Identities=14% Similarity=0.182 Sum_probs=175.7
Q ss_pred CCcccceEEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEE
Q psy6213 2 AYLSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWN 80 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 80 (330)
.|...|.++++++++.+++++ |+++++|+....+.. ..+..+++++ ++..++++. ++.+.+|+
T Consensus 44 ~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ 107 (287)
T d1pgua2 44 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFG--------------SQPKVASANN-DGFTAVLTN-DDDLLILQ 107 (287)
T ss_dssp CCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECS--------------SCEEEEEECS-SSEEEEEET-TSEEEEEE
T ss_pred CCCCCEEEEEecCCCeEEEEeeccccccccccccccc--------------cceeeeeecc-CCceEEEee-cccceeee
Confidence 588999999999888778888 999999998653211 1136677887 776666655 55688898
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC-cEEEEEeecCceeeeee-cCCCCeEEEEEcCCCCcEEEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG-TMRLFDIRCQESTKIFH-SNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 158 (330)
..+ ......+..+ ..+ .+++| ++..+++++.++ .+++|++...+....+. .+..++++++|+|++. +|++
T Consensus 108 ~~~---~~~~~~~~~~-~~~--~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~ 179 (287)
T d1pgua2 108 SFT---GDIIKSVRLN-SPG--SAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAA 179 (287)
T ss_dssp TTT---CCEEEEEECS-SCE--EEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEE
T ss_pred ccc---eeeeeecccc-cee--eeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc-cccc
Confidence 877 5555555433 333 45666 667777777664 79999987666555544 3677899999999998 5999
Q ss_pred EecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCC----------CCEEEEEecCCcEEEEeCCCCcc-ccceecccc
Q psy6213 159 VSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPE----------HAWLATASRDKTIKVWDLSIKPS-LEYSINTIA 227 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~ 227 (330)
++.||.|++||+.+.......+..|...|.+++|+|. +.+|++|+.|+.|++||++.... ......|..
T Consensus 180 g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~ 259 (287)
T d1pgua2 180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259 (287)
T ss_dssp EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT
T ss_pred ccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC
Confidence 9999999999999855445567789999999999874 46899999999999999977543 444456889
Q ss_pred ceEEEEEcCCCCeEEEEeecccCCeEEEEEc
Q psy6213 228 SVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258 (330)
Q Consensus 228 ~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~ 258 (330)
.|++++|+|++. +++++ .|+.|++|++
T Consensus 260 ~V~~v~~~~~~~-l~s~g---~D~~v~iW~i 286 (287)
T d1pgua2 260 GVNNLLWETPST-LVSSG---ADACIKRWNV 286 (287)
T ss_dssp CEEEEEEEETTE-EEEEE---TTSCEEEEEE
T ss_pred CeEEEEECCCCE-EEEEE---CCCeEEEEEE
Confidence 999999999875 45544 5999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=5.8e-27 Score=187.13 Aligned_cols=229 Identities=20% Similarity=0.373 Sum_probs=183.0
Q ss_pred cceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCc
Q psy6213 52 FSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQE 131 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 131 (330)
..|+|++ + ++++||+|+.||.|++||+.+ .+.+..+.+|...|.+++| ++++|++|+.|+.|++|++..+.
T Consensus 16 ~~V~c~~--~-d~~~l~sgs~Dg~i~vWd~~~---~~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~~~~~ 86 (293)
T d1p22a2 16 KGVYCLQ--Y-DDQKIVSGLRDNTIKIWDKNT---LECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGE 86 (293)
T ss_dssp CCEEEEE--C-CSSEEEEEESSSCEEEEESSS---CCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCC
T ss_pred CCEEEEE--E-cCCEEEEEeCCCeEEEEECCC---CcEEEEEecCCCCEeeeec---ccceeeccccccccccccccccc
Confidence 3467665 4 689999999999999999988 7889999999999999886 46899999999999999999888
Q ss_pred eeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcc--ceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 132 STKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEK--CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 132 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
............. .+.+... .++++..++.+.+||...... ....+..|...+..+.+. ...+++++.|+.++
T Consensus 87 ~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~ 161 (293)
T d1p22a2 87 MLNTLIHHCEAVL--HLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 161 (293)
T ss_dssp EEEEECCCCSCEE--EEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred ccccccccccccc--ccccccc-ceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCcee
Confidence 7776664444333 3334444 588999999999999987433 234456678888887776 45788999999999
Q ss_pred EEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEE
Q psy6213 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIA 289 (330)
Q Consensus 210 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 289 (330)
+||.++.+.......+...+..+.+++ .+ +++++ .|+.|++||+++... +....+|...+.. +++++.+|++
T Consensus 162 ~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~-l~~~~--~dg~i~i~d~~~~~~-~~~~~~~~~~v~~--~~~~~~~l~s 233 (293)
T d1p22a2 162 VWNTSTCEFVRTLNGHKRGIACLQYRD--RL-VVSGS--SDNTIRLWDIECGAC-LRVLEGHEELVRC--IRFDNKRIVS 233 (293)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEEET--TE-EEEEE--TTSCEEEEETTTCCE-EEEECCCSSCEEE--EECCSSEEEE
T ss_pred eecCCCCcEEEEEcccccccccccCCC--Ce-EEEec--CCCEEEEEeccccee-eeeecccceeeee--ccccceEEEE
Confidence 999999877766667777888887765 44 55555 599999999998876 7778888888775 5568899999
Q ss_pred eecCCeEeeeecc
Q psy6213 290 SSRVSIIPRAKNI 302 (330)
Q Consensus 290 ~~~dg~i~iw~~~ 302 (330)
++.||.|++|+..
T Consensus 234 g~~dg~i~iwd~~ 246 (293)
T d1p22a2 234 GAYDGKIKVWDLV 246 (293)
T ss_dssp EETTSCEEEEEHH
T ss_pred EcCCCEEEEEECC
Confidence 9999999999743
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=3.5e-28 Score=200.53 Aligned_cols=251 Identities=8% Similarity=0.043 Sum_probs=183.5
Q ss_pred CCCcccceEEEEeeCCCe-eecC-C--CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcE
Q psy6213 1 MAYLSPVHKHGLKADNGL-AQPS-R--NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAV 76 (330)
Q Consensus 1 ~~H~~~v~~~~~s~~~~~-~~~g-d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 76 (330)
+.|.+.|.+++|+|||++ ++++ + ..|++||.++++..... .....+.+++|+| ++++|++++.++.+
T Consensus 39 ~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~--------~~~~~v~~~~~sp-dg~~l~~~~~~~~~ 109 (360)
T d1k32a3 39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--------ENLGNVFAMGVDR-NGKFAVVANDRFEI 109 (360)
T ss_dssp CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC--------CCCCSEEEEEECT-TSSEEEEEETTSEE
T ss_pred ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee--------CCCceEEeeeecc-cccccceecccccc
Confidence 368999999999999999 4555 3 37999999987755322 2233468999999 99999999999999
Q ss_pred EEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEe----------cCCcEEEEEeecCceeeeeecCCCCeEEE
Q psy6213 77 VVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGS----------QDGTMRLFDIRCQESTKIFHSNTESVRDV 146 (330)
Q Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 146 (330)
++|+..+ .+....+..|...+.+++|+| ++++|+.+. .++.+++||+.+++..... .+...+..+
T Consensus 110 ~~~~~~~---~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~~ 184 (360)
T d1k32a3 110 MTVDLET---GKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSHDYAP 184 (360)
T ss_dssp EEEETTT---CCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSBEEEE
T ss_pred ccccccc---cceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccccccc
Confidence 9999988 677778888999999999999 888888654 3456999999887665544 466788999
Q ss_pred EEcCCCCcEEEEEecCCcEEEEecCCCcc------ceeee------------------------------------ccCC
Q psy6213 147 EFNPHSPYAFASVSENGTIQQWDVRRPEK------CFYQF------------------------------------TAHS 184 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~------~~~~~------------------------------------~~~~ 184 (330)
+|+|+++ .|++++.++.+.+||...... ....+ ....
T Consensus 185 ~~spdg~-~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (360)
T d1k32a3 185 AFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP 263 (360)
T ss_dssp EECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC
T ss_pred cccCCCC-EEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCc
Confidence 9999999 588899999999998653210 00000 0011
Q ss_pred CCeEEEEEcCCCC-------------EEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCC
Q psy6213 185 GPIFACDWHPEHA-------------WLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDS 251 (330)
Q Consensus 185 ~~i~~~~~~~~~~-------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 251 (330)
+....+...+++. ++++++.++.+++||+.+++. ..+...+..++|+|||++|++++ .||
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~v~~~~~SpDG~~l~~~~---~Dg 336 (360)
T d1k32a3 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRK---DDG 336 (360)
T ss_dssp BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE----EEEEEEEEEEEECTTSCEEEEEE---TTS
T ss_pred CceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE----EEecCCcCEEEECCCCCEEEEEE---CCC
Confidence 1222333333222 344556688899999987643 23446799999999999855544 599
Q ss_pred eEEEEEccCCCccceEeecCCCC
Q psy6213 252 SVNVWDIRRPYIPLASFTEHKDV 274 (330)
Q Consensus 252 ~i~i~d~~~~~~~~~~~~~~~~~ 274 (330)
.|++||+++++. ..++..+..+
T Consensus 337 ~i~v~d~~~~~~-~~~~~~d~~~ 358 (360)
T d1k32a3 337 KIYTFPLEKPED-ERTVETDKRP 358 (360)
T ss_dssp CEEEEESSCTTS-CEECCCCSSC
T ss_pred eEEEEECCCCCc-ceEEEecccc
Confidence 999999998876 5555544444
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=9.5e-27 Score=196.65 Aligned_cols=282 Identities=11% Similarity=0.069 Sum_probs=193.5
Q ss_pred EEeeCCC--e-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCC
Q psy6213 11 GLKADNG--L-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISR 86 (330)
Q Consensus 11 ~~s~~~~--~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 86 (330)
.++.|.+ + ++.. ||.|+|||+.+++.+..+..+. .+..++|+| +++++++++.|+.+++||+.+...
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~--------~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~ 95 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY--------AVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEP 95 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS--------SEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC--------CeeEEEECC-CCCEEEEEeCCCCEEEEEccCCce
Confidence 4555544 3 3344 9999999999999887776442 258899999 999999999999999999987321
Q ss_pred Cc--eeEEecccccceeEEEEEecCCCEE-EEEecCCcEEEEEeecCceeeeeecCCC-----------CeEEEEEcCCC
Q psy6213 87 SK--QERVFNDHKRTVNKVSFHYVESNWL-ISGSQDGTMRLFDIRCQESTKIFHSNTE-----------SVRDVEFNPHS 152 (330)
Q Consensus 87 ~~--~~~~~~~~~~~i~~i~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------~v~~~~~~~~~ 152 (330)
.. .+....+|...+.+++|+| +++++ +++..++.+.+||..+++....+..+.. ....+.+++++
T Consensus 96 ~~~~~i~~~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~ 174 (426)
T d1hzua2 96 TKVAEIKIGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 174 (426)
T ss_dssp EEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred eEEEEEeCCCCCcceEEeeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCC
Confidence 11 1222335667777888888 77765 5556889999999999888776654433 34455666666
Q ss_pred CcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCcc-------------
Q psy6213 153 PYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPS------------- 218 (330)
Q Consensus 153 ~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------------- 218 (330)
..++.+....+.+.+++.............+...+..+.|+|++++++++. .+..+.+++..+++.
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (426)
T d1hzua2 175 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254 (426)
T ss_dssp SEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCS
T ss_pred CEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccc
Confidence 654444555566666666553333334445777889999999999877766 444566776554321
Q ss_pred -----------------------------------------ccceeccccceEEEEEcCCCCeEEEEee----cccCCeE
Q psy6213 219 -----------------------------------------LEYSINTIASVSRIKWRPQRKFHLASCS----LVVDSSV 253 (330)
Q Consensus 219 -----------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~~~~~~i 253 (330)
......|...+..++|+|+++++++... ...+++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv 334 (426)
T d1hzua2 255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 334 (426)
T ss_dssp CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCE
T ss_pred ceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEE
Confidence 0111223456788999999998665321 1157899
Q ss_pred EEEEccCCCccceE--------eecCCCCeEEEEEecCCCEEEEe-----ecCCeEeeeecc
Q psy6213 254 NVWDIRRPYIPLAS--------FTEHKDVVSGLAWRGDPQLFIAS-----SRVSIIPRAKNI 302 (330)
Q Consensus 254 ~i~d~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~s~-----~~dg~i~iw~~~ 302 (330)
++||+.+++..... +..|...|.+++|+|||++++.+ +.+|.|++|+..
T Consensus 335 ~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~ 396 (426)
T d1hzua2 335 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 396 (426)
T ss_dssp EEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred EEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence 99999988753222 23456679999999999977442 368899999743
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=4.3e-26 Score=192.61 Aligned_cols=261 Identities=11% Similarity=0.086 Sum_probs=176.3
Q ss_pred ccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEE-EcCCCcEEEEEC
Q psy6213 5 SPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIAT-GATNGAVVVWNL 81 (330)
Q Consensus 5 ~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~iw~~ 81 (330)
..+..++|||||++ ++++ |+.+++||+++++........... .+...+.+++|+| +++++++ +..++.+.+||.
T Consensus 62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~--~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d~ 138 (426)
T d1hzua2 62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI--EARSVESSKFKGY-EDRYTIAGAYWPPQFAIMDG 138 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS--EEEEEEECCSTTC-TTTEEEEEEEESSEEEEEET
T ss_pred CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCC--CCcceEEeeeecC-CCCEEEEeecCCCeEEEEcC
Confidence 56899999999999 4555 999999999998765544433221 1122246788999 8887654 557899999999
Q ss_pred CCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC-----------cEEEEEeecCcee-eeeecCCCCeEEEEEc
Q psy6213 82 GQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG-----------TMRLFDIRCQEST-KIFHSNTESVRDVEFN 149 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~-~~~~~~~~~v~~~~~~ 149 (330)
.. ......+..|...+....+.+......++++.|+ .+.+++....... .....+...+..++|+
T Consensus 139 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (426)
T d1hzua2 139 ET---LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD 215 (426)
T ss_dssp TT---CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC
T ss_pred Cc---cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC
Confidence 88 6666666666555554444442222333333444 3444444333322 2223466778899999
Q ss_pred CCCCcEEEEEecCCcEEEEecCCCc-----------------------------------------------------cc
Q psy6213 150 PHSPYAFASVSENGTIQQWDVRRPE-----------------------------------------------------KC 176 (330)
Q Consensus 150 ~~~~~~~~~~~~dg~i~i~d~~~~~-----------------------------------------------------~~ 176 (330)
|++++++++...+..+.+++..+.. +.
T Consensus 216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~ 295 (426)
T d1hzua2 216 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK 295 (426)
T ss_dssp TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSE
T ss_pred CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceE
Confidence 9999766665556666666654311 22
Q ss_pred eeeeccCCCCeEEEEEcCCCCEEEE-------EecCCcEEEEeCCCCcccccee---------ccccceEEEEEcCCCCe
Q psy6213 177 FYQFTAHSGPIFACDWHPEHAWLAT-------ASRDKTIKVWDLSIKPSLEYSI---------NTIASVSRIKWRPQRKF 240 (330)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~ 240 (330)
...+.+|...+..++|+|++++|++ +..|++|++||+.+++...... .+...+..++|+|||++
T Consensus 296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~ 375 (426)
T d1hzua2 296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE 375 (426)
T ss_dssp EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE
T ss_pred eEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE
Confidence 3345677888999999999999995 4567899999999886543332 23556899999999998
Q ss_pred EEEEee--cccCCeEEEEEccCCCccceEeecCC
Q psy6213 241 HLASCS--LVVDSSVNVWDIRRPYIPLASFTEHK 272 (330)
Q Consensus 241 l~~~~~--~~~~~~i~i~d~~~~~~~~~~~~~~~ 272 (330)
+++++. ...++.|+|||.++.+. ...+.++.
T Consensus 376 i~vs~~~~~~~~~~i~v~D~~T~k~-~~~i~~~~ 408 (426)
T d1hzua2 376 VWFSVWNGKNDSSALVVVDDKTLKL-KAVVKDPR 408 (426)
T ss_dssp EEEEECCCTTSCCEEEEEETTTTEE-EEEECCTT
T ss_pred EEEEEecCCCCCCeEEEEECCCCeE-EEEECCCC
Confidence 776642 12588999999999875 56666553
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=6.2e-24 Score=170.50 Aligned_cols=244 Identities=13% Similarity=0.081 Sum_probs=184.3
Q ss_pred ccceEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCc-EEEEEcCCCcEEEEE
Q psy6213 5 SPVHKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEEN-HIATGATNGAVVVWN 80 (330)
Q Consensus 5 ~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iw~ 80 (330)
+.+..++|+|||++ ++++ ++.|++||+.+++....+..+. .+..++|++ ++. .++++..++.+.+|+
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 102 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--------SPQGVAVSP-DGKQVYVTNMASSTLSVID 102 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--------SEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc--------ccccccccc-ccccccccccccceeeecc
Confidence 45788999999998 4454 8999999999988776654332 247899999 655 555667788899999
Q ss_pred CCCCCCCceeEEecccccceeEEEEEecCCCEE-EEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 81 LGQISRSKQERVFNDHKRTVNKVSFHYVESNWL-ISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
..+ .+....+.. .....++.++| ++..+ +++..++.+.+|+..+.+....+.. ...+..++++|++..++++.
T Consensus 103 ~~~---~~~~~~~~~-~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 176 (301)
T d1l0qa2 103 TTS---NTVAGTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVAN 176 (301)
T ss_dssp TTT---TEEEEEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEE
T ss_pred ccc---ceeeeeccc-cccceEEEeec-CCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEeeccccceeeec
Confidence 987 566666554 45678899998 55554 5666788899999999988887774 45688999999999655555
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec---CCcEEEEeCCCCccccceeccccceEEEEEcC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR---DKTIKVWDLSIKPSLEYSINTIASVSRIKWRP 236 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 236 (330)
..++.+.+|+... ........ ....+..++++++++.++.++. ++.|++||+.+++... .......+..++|+|
T Consensus 177 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~-~~~~~~~~~~va~sp 253 (301)
T d1l0qa2 177 FDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA-RIPVGPDPAGIAVTP 253 (301)
T ss_dssp TTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE-EEECCSSEEEEEECT
T ss_pred ccccccccccccc-eeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE-EEcCCCCEEEEEEeC
Confidence 5567777887765 44444444 4456788999999998876654 4679999999885443 344456789999999
Q ss_pred CCCeEEEEeecccCCeEEEEEccCCCccceEee
Q psy6213 237 QRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT 269 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 269 (330)
||++++++++ .++.|++||+++++. +.++.
T Consensus 254 dg~~l~va~~--~~~~i~v~D~~t~~~-~~~~~ 283 (301)
T d1l0qa2 254 DGKKVYVALS--FCNTVSVIDTATNTI-TATMA 283 (301)
T ss_dssp TSSEEEEEET--TTTEEEEEETTTTEE-EEEEE
T ss_pred CCCEEEEEEC--CCCeEEEEECCCCeE-EEEEe
Confidence 9999877777 699999999998865 55554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=2.7e-25 Score=187.50 Aligned_cols=283 Identities=12% Similarity=0.036 Sum_probs=176.2
Q ss_pred ccceEEEEeeCCCe-eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEE-EEEcCCCcEEEEEC
Q psy6213 5 SPVHKHGLKADNGL-AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHI-ATGATNGAVVVWNL 81 (330)
Q Consensus 5 ~~v~~~~~s~~~~~-~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~ 81 (330)
..+..++|||||++ ++++ |+.+++||+.+++........... .....+.+.+|+| ++++| +++..++.|++||.
T Consensus 62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~--~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~ 138 (432)
T d1qksa2 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--EARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDG 138 (432)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--EEEEEEECCSTTC-TTTEEEEEEEETTEEEEEET
T ss_pred CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC--CCCCeEEecccCC-CCCEEEEEcCCCCeEEEEeC
Confidence 46899999999999 4555 999999999887654333322211 1112246678899 88865 67888999999999
Q ss_pred CCCCCCceeEEeccc-----------ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee-cCCCCeEEEEEc
Q psy6213 82 GQISRSKQERVFNDH-----------KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH-SNTESVRDVEFN 149 (330)
Q Consensus 82 ~~~~~~~~~~~~~~~-----------~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~ 149 (330)
.+ .+....+..+ ......+.++|++..++++...++.|.+||..+.+...... .+...+..++|+
T Consensus 139 ~t---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s 215 (432)
T d1qksa2 139 ET---LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 215 (432)
T ss_dssp TT---CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred cc---ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceEC
Confidence 88 5555554433 34456788888433445667778999999998776544332 255678899999
Q ss_pred CCCCcEEEEEecCCcEEEEecCCCccceeeec-----cCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCccccc--
Q psy6213 150 PHSPYAFASVSENGTIQQWDVRRPEKCFYQFT-----AHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPSLEY-- 221 (330)
Q Consensus 150 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-- 221 (330)
|+++++++++..++.+.++|..+ .+....+. .|........+...+...++.. .++.+.+|+.........
T Consensus 216 pdg~~~~va~~~~~~v~v~d~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~ 294 (432)
T d1qksa2 216 GSHRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW 294 (432)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred CCCCEEEEeccccceEEEeeccc-ceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccccccc
Confidence 99997677777778899999876 33332221 1222233333333333333332 255666665543311000
Q ss_pred -----ee-------------------------ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecC
Q psy6213 222 -----SI-------------------------NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEH 271 (330)
Q Consensus 222 -----~~-------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 271 (330)
.. .+......+++ ||++. +++++ .|+.+++|++.+.. .+..|
T Consensus 295 ~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~-la~~s--~d~~~k~w~~~~~~----~l~~~ 366 (432)
T d1qksa2 295 KILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKA-MTGDG--SDPEFKTLPIAEWA----GITEG 366 (432)
T ss_dssp SEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGG-CCCSS--SCCCEEEECHHHHH----TCCSS
T ss_pred EEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Eechh-hcccc--cCCceEeccccccc----ccCCC
Confidence 00 00001112222 55554 44444 47777777765432 22356
Q ss_pred CCCeEEEEEecCCCEEEEee-----cCCeEeeeecc
Q psy6213 272 KDVVSGLAWRGDPQLFIASS-----RVSIIPRAKNI 302 (330)
Q Consensus 272 ~~~v~~~~~~~~~~~l~s~~-----~dg~i~iw~~~ 302 (330)
...+.+++|+|||++++.+. .+|.|.||+..
T Consensus 367 ~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~ 402 (432)
T d1qksa2 367 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK 402 (432)
T ss_dssp CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred CCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECC
Confidence 77899999999999886654 46889999743
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=1.4e-23 Score=170.99 Aligned_cols=261 Identities=7% Similarity=-0.031 Sum_probs=185.5
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEE-EEEcCCCcEEEEECCCCCCCceeEEeccc
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHI-ATGATNGAVVVWNLGQISRSKQERVFNDH 96 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 96 (330)
++++ |++|+|||+++++....+..+... ..+.+++|+| +++++ ++++.++.|.+||+.+ ++.+..+..+
T Consensus 5 vt~~~d~~v~v~D~~s~~~~~~i~~~~~~-----~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t---~~~~~~~~~~ 75 (337)
T d1pbyb_ 5 LAPARPDKLVVIDTEKMAVDKVITIADAG-----PTPMVPMVAP-GGRIAYATVNKSESLVKIDLVT---GETLGRIDLS 75 (337)
T ss_dssp EEEETTTEEEEEETTTTEEEEEEECTTCT-----TCCCCEEECT-TSSEEEEEETTTTEEEEEETTT---CCEEEEEECC
T ss_pred EEEcCCCEEEEEECCCCeEEEEEECCCCC-----CCccEEEECC-CCCEEEEEECCCCeEEEEECCC---CcEEEEEecC
Confidence 5555 999999999999887776544321 1247899999 88876 5677899999999998 6666655543
Q ss_pred c-----cceeEEEEEecCCCEEEEEec------------CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 97 K-----RTVNKVSFHYVESNWLISGSQ------------DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 97 ~-----~~i~~i~~~~~~~~~l~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
. ..+..++|+| ++++++++.. +..+.+||..+++....+. ....+..++|+|++++ ++++
T Consensus 76 ~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~-l~~~ 152 (337)
T d1pbyb_ 76 TPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSK-LYGL 152 (337)
T ss_dssp BTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSC-EEEE
T ss_pred CCcccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCE-EEEE
Confidence 3 3456899998 8888877653 5688999999998888877 4456889999999996 5565
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCC------------------------CEEEEEecCCcEEEEeCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH------------------------AWLATASRDKTIKVWDLSI 215 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~------------------------~~l~~~~~dg~i~i~d~~~ 215 (330)
+ +.+.+||..+ .+....+..+.. .....+.|++ .....+..++.+.+||..+
T Consensus 153 ~--~~~~~~d~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (337)
T d1pbyb_ 153 G--RDLHVMDPEA-GTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET 228 (337)
T ss_dssp S--SSEEEEETTT-TEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT
T ss_pred c--CCcceeeeec-CcEEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCC
Confidence 5 4578899887 344444332211 1111111211 1111222345688899887
Q ss_pred Ccccc-ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCC
Q psy6213 216 KPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVS 294 (330)
Q Consensus 216 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 294 (330)
+.... ...++...+..+.++|++.+ +++. ++.+++||+.+++. +..+ .+...+.+++|+|||++|++++.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~i~v~d~~~~~~-~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~ 301 (337)
T d1pbyb_ 229 GEMAMREVRIMDVFYFSTAVNPAKTR-AFGA----YNVLESFDLEKNAS-IKRV-PLPHSYYSVNVSTDGSTVWLGGALG 301 (337)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSE-EEEE----ESEEEEEETTTTEE-EEEE-ECSSCCCEEEECTTSCEEEEESBSS
T ss_pred CcEEEEEecCCCcceEEEEecccceE-EEEc----cccEEEEECCCCcE-EEEE-cCCCCEEEEEECCCCCEEEEEeCCC
Confidence 75433 23445677888999999986 4443 78999999999875 4444 3566789999999999999999999
Q ss_pred eEeeeecc
Q psy6213 295 IIPRAKNI 302 (330)
Q Consensus 295 ~i~iw~~~ 302 (330)
.|++|+..
T Consensus 302 ~i~v~D~~ 309 (337)
T d1pbyb_ 302 DLAAYDAE 309 (337)
T ss_dssp EEEEEETT
T ss_pred cEEEEECC
Confidence 99999864
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.93 E-value=7.7e-24 Score=173.20 Aligned_cols=270 Identities=9% Similarity=-0.004 Sum_probs=189.5
Q ss_pred EEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEE-EEEcCCCcEEEEECCCCCC
Q psy6213 10 HGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHI-ATGATNGAVVVWNLGQISR 86 (330)
Q Consensus 10 ~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~ 86 (330)
++|++++++++++ ++.|.+||+++++....+..+.+. .+.+++|+| +++++ +++..++.|.+||+.+
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~------~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t--- 71 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF------GPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDT--- 71 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCC------SSCEEEECT-TSSEEEEEETTTTEEEEEETTT---
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCC------CcceEEECC-CCCEEEEEECCCCcEEEEeCcc---
Confidence 5789999995555 999999999999988776654332 137899999 88776 5666789999999988
Q ss_pred CceeEEeccc------ccceeEEEEEecCCCEEEEEe------------cCCcEEEEEeecCceeeeeec--CCCCeEEE
Q psy6213 87 SKQERVFNDH------KRTVNKVSFHYVESNWLISGS------------QDGTMRLFDIRCQESTKIFHS--NTESVRDV 146 (330)
Q Consensus 87 ~~~~~~~~~~------~~~i~~i~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~ 146 (330)
.+....+... ...+..++|+| +++++++++ .++.+.+||..+++....+.. ....+..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (346)
T d1jmxb_ 72 CKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150 (346)
T ss_dssp TEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE
T ss_pred CeeeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEE
Confidence 5555444322 23467899998 888887765 367889999988776554432 23456667
Q ss_pred EEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCC--------------------------EEE
Q psy6213 147 EFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHA--------------------------WLA 200 (330)
Q Consensus 147 ~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------------~l~ 200 (330)
.+++++. ++++ ++.+.+|++.+ .+....+..+ .....+.++|++. .++
T Consensus 151 ~~~~~~~-~~~~---~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (346)
T d1jmxb_ 151 RAADDGS-LYVA---GPDIYKMDVKT-GKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224 (346)
T ss_dssp EECTTSC-EEEE---SSSEEEECTTT-CCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C
T ss_pred EecCCCE-EEEe---CCcceEEEccC-CCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEe
Confidence 7777775 3443 35689999887 4444444432 2233334444332 233
Q ss_pred EEecCCcEEEEeCCCCcccc-ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEE
Q psy6213 201 TASRDKTIKVWDLSIKPSLE-YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLA 279 (330)
Q Consensus 201 ~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 279 (330)
++..++.+.+||..++.... ....+...+..+.+++++.+++ ... ++.+.+||..+++. +..+. +...+.+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~v~v~d~~~~~~-~~~~~-~~~~~~~va 298 (346)
T d1jmxb_ 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-YGV---LNRLAKYDLKQRKL-IKAAN-LDHTYYCVA 298 (346)
T ss_dssp CCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-EEE---ESEEEEEETTTTEE-EEEEE-CSSCCCEEE
T ss_pred eccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEE-Eec---CCeEEEEECCCCcE-EEEEc-CCCCEEEEE
Confidence 34445668888888775433 3345667788899999998744 444 67899999998865 44443 455799999
Q ss_pred EecCCCEEEEeecCCeEeeeecc
Q psy6213 280 WRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 280 ~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
|+|||++|++++.||.|++|+..
T Consensus 299 ~s~DG~~l~v~~~d~~v~v~D~~ 321 (346)
T d1jmxb_ 299 FDKKGDKLYLGGTFNDLAVFNPD 321 (346)
T ss_dssp ECSSSSCEEEESBSSEEEEEETT
T ss_pred EcCCCCEEEEEeCCCcEEEEECc
Confidence 99999999999999999999864
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=3.3e-23 Score=174.57 Aligned_cols=230 Identities=11% Similarity=0.013 Sum_probs=163.8
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC--ceeEEecc
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS--KQERVFND 95 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~~~~ 95 (330)
++.. +|.|.|||.++++.+..+..+. .+..++|+| +++++++++.||.+++||+.+.+.. ..+.....
T Consensus 36 v~~~d~g~v~v~D~~t~~v~~~~~~g~--------~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~ 106 (432)
T d1qksa2 36 VTLRDAGQIALIDGSTYEIKTVLDTGY--------AVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 106 (432)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEECSS--------CEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred EEEcCCCEEEEEECCCCcEEEEEeCCC--------CeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC
Confidence 4455 9999999999999988776442 158999999 9999999999999999999873221 12223345
Q ss_pred cccceeEEEEEecCCCEE-EEEecCCcEEEEEeecCceeeeeec-----------CCCCeEEEEEcCCCCcEEEEEecCC
Q psy6213 96 HKRTVNKVSFHYVESNWL-ISGSQDGTMRLFDIRCQESTKIFHS-----------NTESVRDVEFNPHSPYAFASVSENG 163 (330)
Q Consensus 96 ~~~~i~~i~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~dg 163 (330)
|.+.+.+..|+| ++++| ++++.++.|++||..+++.+..+.. +......+.++|+++.++++...++
T Consensus 107 ~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~ 185 (432)
T d1qksa2 107 ARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 185 (432)
T ss_dssp EEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CCCeEEecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence 666777778888 77765 7788899999999999988776653 2345677899999997778888899
Q ss_pred cEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec-CCcEEEEeCCCCcccccee-----ccccceEEEEEcCC
Q psy6213 164 TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR-DKTIKVWDLSIKPSLEYSI-----NTIASVSRIKWRPQ 237 (330)
Q Consensus 164 ~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~ 237 (330)
.|.+||..+........-.+...+..++|+|+|+++++++. ++.+.++|..+.+...... .+........+.+.
T Consensus 186 ~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 265 (432)
T d1qksa2 186 KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF 265 (432)
T ss_dssp EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTT
T ss_pred eEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCC
Confidence 99999988743322222235567889999999998777764 5578889988764422211 12333444555555
Q ss_pred CCeEEEEeecccCCeEEEEEccC
Q psy6213 238 RKFHLASCSLVVDSSVNVWDIRR 260 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~~~ 260 (330)
+........ .++.+.+|+...
T Consensus 266 g~~~~~~~l--g~~~v~~~~~~~ 286 (432)
T d1qksa2 266 GPVWATSHM--GDDSVALIGTDP 286 (432)
T ss_dssp EEEEEEEBS--SSSEEEEEECCT
T ss_pred Cceeccccc--CCceEEeccccc
Confidence 554333332 477888887654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2e-21 Score=158.00 Aligned_cols=274 Identities=10% Similarity=0.129 Sum_probs=187.5
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEE-EcCCCcEEEEECCCCCCCceeEEeccc
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIAT-GATNGAVVVWNLGQISRSKQERVFNDH 96 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~ 96 (330)
++++ ++.|++|+++.......... ..+...+..++|+| ++++|++ +..|+.|++|++..............+
T Consensus 8 v~~~~~~~I~v~~~~~~~~l~~~~~-----~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~ 81 (333)
T d1ri6a_ 8 IASPESQQIHVWNLNHEGALTLTQV-----VDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 81 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEE-----EECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred EECCCCCcEEEEEEcCCCCeEEEEE-----EcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence 4455 99999999986543332221 11223358999999 8888855 455899999999863322222222334
Q ss_pred ccceeEEEEEecCCCEEEEEec-CCcEEEEEeecCceeeee--ecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCC
Q psy6213 97 KRTVNKVSFHYVESNWLISGSQ-DGTMRLFDIRCQESTKIF--HSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 173 (330)
...+..++|+| ++++|++++. ++.+.+|+.......... ..+...+.++.++|++++++.....+..+.+|+....
T Consensus 82 ~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~ 160 (333)
T d1ri6a_ 82 PGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 160 (333)
T ss_dssp SSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCCceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence 56678899999 8888888875 678999998876554333 3456678899999999976666666778999998764
Q ss_pred ccceee-----eccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCccccc----------eeccccceEEEEEcCC
Q psy6213 174 EKCFYQ-----FTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPSLEY----------SINTIASVSRIKWRPQ 237 (330)
Q Consensus 174 ~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~----------~~~~~~~v~~~~~~~~ 237 (330)
...... ..........++|++++.+++... ..+...+|+......... ..........++++++
T Consensus 161 ~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 240 (333)
T d1ri6a_ 161 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 240 (333)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred CcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecc
Confidence 332211 122345568899999998876655 556788888654422111 1112345678899999
Q ss_pred CCeEEEEeecccCCeEEEEEccCCCccce--EeecCCCCeEEEEEecCCCEEEEee-cCCeEeeeec
Q psy6213 238 RKFHLASCSLVVDSSVNVWDIRRPYIPLA--SFTEHKDVVSGLAWRGDPQLFIASS-RVSIIPRAKN 301 (330)
Q Consensus 238 ~~~l~~~~~~~~~~~i~i~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~iw~~ 301 (330)
++++++... .++.+.+|++........ ........+.+++|+|||++|++++ .++.|.+|+.
T Consensus 241 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 241 GRHLYACDR--TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp SSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred cCceeeecc--cCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 998888877 689999999876554222 2233445678999999999887765 4688999964
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=2.3e-22 Score=163.73 Aligned_cols=249 Identities=9% Similarity=0.028 Sum_probs=177.3
Q ss_pred cccceEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC--------
Q psy6213 4 LSPVHKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-------- 72 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------- 72 (330)
...+.+++|+|||++ ++++ ++.|.+||+.+++.......+.... ....+..++|+| ++++++++..
T Consensus 33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~--~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~ 109 (337)
T d1pbyb_ 33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE--RVKSLFGAALSP-DGKTLAIYESPVRLELTH 109 (337)
T ss_dssp TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--EEECTTCEEECT-TSSEEEEEEEEEEECSSC
T ss_pred CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--cccceeeEEEcC-CCcEEEEeecCCcceeee
Confidence 355789999999998 4554 9999999999998887666543221 112246899999 8888887753
Q ss_pred ----CCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEE
Q psy6213 73 ----NGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEF 148 (330)
Q Consensus 73 ----dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 148 (330)
+..+.+||..+ ......+. +...+..++|+| +++++++++. .+.+||..+++....+..+... ....+
T Consensus 110 ~~~~~~~~~~~d~~~---~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~ 181 (337)
T d1pbyb_ 110 FEVQPTRVALYDAET---LSRRKAFE-APRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYA 181 (337)
T ss_dssp EEECCCEEEEEETTT---TEEEEEEE-CCSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBC
T ss_pred ccccccceeeccccC---CeEEEecc-ccCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-cccee
Confidence 56788999887 56665555 346688999998 8888888864 4788999888877666532211 11112
Q ss_pred cCCCCc-----------------------EEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC
Q psy6213 149 NPHSPY-----------------------AFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD 205 (330)
Q Consensus 149 ~~~~~~-----------------------~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 205 (330)
.|++.. ....+..++.+.+||..++......+..+...+..+.++|++.+++.+ +
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 259 (337)
T d1pbyb_ 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--E
T ss_pred cCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--c
Confidence 222111 011123345688899887554455566677888999999999988766 4
Q ss_pred CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec
Q psy6213 206 KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE 270 (330)
Q Consensus 206 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 270 (330)
+.+++||+.+++... ...+...+.+++|+|||+++++++ .++.|++||..+.+. +..+..
T Consensus 260 ~~i~v~d~~~~~~~~-~~~~~~~~~~~~~s~dG~~l~v~~---~~~~i~v~D~~t~~~-v~~i~~ 319 (337)
T d1pbyb_ 260 NVLESFDLEKNASIK-RVPLPHSYYSVNVSTDGSTVWLGG---ALGDLAAYDAETLEK-KGQVDL 319 (337)
T ss_dssp SEEEEEETTTTEEEE-EEECSSCCCEEEECTTSCEEEEES---BSSEEEEEETTTCCE-EEEEEC
T ss_pred ccEEEEECCCCcEEE-EEcCCCCEEEEEECCCCCEEEEEe---CCCcEEEEECCCCcE-EEEEEC
Confidence 789999999985444 345567789999999999866655 499999999999876 555543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.89 E-value=1.1e-19 Score=150.09 Aligned_cols=279 Identities=9% Similarity=-0.072 Sum_probs=190.4
Q ss_pred CCcccceEEEEeeCCCee-ecC------CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc---
Q psy6213 2 AYLSPVHKHGLKADNGLA-QPS------RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA--- 71 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~-~~g------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--- 71 (330)
.|.+++.+++++|||+.+ ++. .+.+.+||.++++....+.... . ..++|+| ++++|++++
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~--~-------~~~a~Sp-DG~~l~va~~~~ 87 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF--L-------PNPVAAH-SGSEFALASTSF 87 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC--C-------ccEEEcC-CCCEEEEEeecC
Confidence 477899999999999983 332 4679999999998877654321 1 4689999 999998875
Q ss_pred -------CCCcEEEEECCCCCCCceeEEecccccce-------eEEEEEecCCCEEEEE--ecCCcEEEEEeecCceeee
Q psy6213 72 -------TNGAVVVWNLGQISRSKQERVFNDHKRTV-------NKVSFHYVESNWLISG--SQDGTMRLFDIRCQESTKI 135 (330)
Q Consensus 72 -------~dg~i~iw~~~~~~~~~~~~~~~~~~~~i-------~~i~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~ 135 (330)
.++.|.+||..+ .+....+..+.... ..+.|++ +++.++.. ..++.+.+|+....+....
T Consensus 88 ~~~~~~~~~~~v~v~D~~t---~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
T d2madh_ 88 SRIAKGKRTDYVEVFDPVT---FLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQL 163 (373)
T ss_pred CcccccccceEEEEEECCC---CcEEEEEecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeEEEE
Confidence 357899999988 56666555444332 4577887 56655444 3456788888877665443
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeecc------CCCCeEEEEEcCCCCEEEEEecCCcEE
Q psy6213 136 FHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTA------HSGPIFACDWHPEHAWLATASRDKTIK 209 (330)
Q Consensus 136 ~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~ 209 (330)
. ....++.++|+++.++++.+.|+.+.+||... ......... .......+.+.+++. ++..+.++.+.
T Consensus 164 ~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~ 237 (373)
T d2madh_ 164 L----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG-GAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKIL 237 (373)
T ss_pred e----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCC-ceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEE
Confidence 3 34568899999998888999999999999887 333333221 112234455666554 45566788999
Q ss_pred EEeCCCCcccccee------------ccccceEEEEEcCCCCeEEEEeec-------ccCCeEEEEEccCCCccceEeec
Q psy6213 210 VWDLSIKPSLEYSI------------NTIASVSRIKWRPQRKFHLASCSL-------VVDSSVNVWDIRRPYIPLASFTE 270 (330)
Q Consensus 210 i~d~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~~-------~~~~~i~i~d~~~~~~~~~~~~~ 270 (330)
+|+........... ........+++++++..++..... ..++.+.+||..+++. +..+ .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~-~~~~-~ 315 (373)
T d2madh_ 238 QADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT-SSQI-S 315 (373)
T ss_pred EEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE-EEEe-c
Confidence 99987663211110 012234456777776654332210 0467899999998875 4444 4
Q ss_pred CCCCeEEEEEecCCCE--EEEeecCCeEeeeecc
Q psy6213 271 HKDVVSGLAWRGDPQL--FIASSRVSIIPRAKNI 302 (330)
Q Consensus 271 ~~~~v~~~~~~~~~~~--l~s~~~dg~i~iw~~~ 302 (330)
+...+.+++|+|||+. +++++.|+.|++|+..
T Consensus 316 ~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 316 LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence 5677999999999984 4678999999999854
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=7.2e-20 Score=148.66 Aligned_cols=249 Identities=13% Similarity=0.123 Sum_probs=171.4
Q ss_pred CCcccceEEEEeeCCCee-ecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-CCcEE
Q psy6213 2 AYLSPVHKHGLKADNGLA-QPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-NGAVV 77 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~~-~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~ 77 (330)
.|.+.+..++|+|||++| +++ |+.|++|++..+........+.. ....+..++|+| ++++|++++. ++.+.
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~----~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~ 108 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA----LPGSLTHISTDH-QGQFVFVGSYNAGNVS 108 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE----CSSCCSEEEECT-TSSEEEEEETTTTEEE
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc----cCCCceEEEEcC-CCCEEeecccCCCcee
Confidence 477889999999999984 444 89999999987654433322221 112247899999 8998888875 67899
Q ss_pred EEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEe-cCCcEEEEEeecCceeeee------ecCCCCeEEEEEcC
Q psy6213 78 VWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGS-QDGTMRLFDIRCQESTKIF------HSNTESVRDVEFNP 150 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~------~~~~~~v~~~~~~~ 150 (330)
+|+..... .........+...+.++.++| +++++++++ .+..+.+|+.......... .........++|++
T Consensus 109 ~~~~~~~~-~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~ 186 (333)
T d1ri6a_ 109 VTRLEDGL-PVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP 186 (333)
T ss_dssp EEEEETTE-EEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred eecccccc-ceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEec
Confidence 99877621 222333445667788999998 777777665 4567999998765432211 12345678999999
Q ss_pred CCCcEEEEEecCCcEEEEecCCCcccee---eec------cCCCCeEEEEEcCCCCEEEEE-ecCCcEEEEeCCCCcccc
Q psy6213 151 HSPYAFASVSENGTIQQWDVRRPEKCFY---QFT------AHSGPIFACDWHPEHAWLATA-SRDKTIKVWDLSIKPSLE 220 (330)
Q Consensus 151 ~~~~~~~~~~~dg~i~i~d~~~~~~~~~---~~~------~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 220 (330)
++...+.+....+...+++......... ... ........+++++++++++.. ..++.+.+|++.......
T Consensus 187 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (333)
T d1ri6a_ 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL 266 (333)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred cceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE
Confidence 9997666666777888888764322211 111 123456778999999876655 467789999987664433
Q ss_pred cee---ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEcc
Q psy6213 221 YSI---NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 221 ~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~ 259 (330)
... .....+..++|+|||++|++++. .++.|++|++.
T Consensus 267 ~~~~~~~~~~~p~~~a~spDGk~l~va~~--~~~~v~v~~id 306 (333)
T d1ri6a_ 267 SKEGFQPTETQPRGFNVDHSGKYLIAAGQ--KSHHISVYEIV 306 (333)
T ss_dssp EEEEEEECSSSCCCEEECTTSSEEEEECT--TTCEEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEeCCCCEEEEEEC--CCCeEEEEEEE
Confidence 322 23456788999999999888776 68999999664
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=1.2e-20 Score=154.02 Aligned_cols=257 Identities=11% Similarity=-0.004 Sum_probs=174.7
Q ss_pred CCcccceEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc-------
Q psy6213 2 AYLSPVHKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA------- 71 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------- 71 (330)
.|...+.+++|+|||++ ++++ ++.|++||+.+++........... ......+..++|+| +++++++++
T Consensus 37 ~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~-~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~ 114 (346)
T d1jmxb_ 37 PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP-GEVGRSMYSFAISP-DGKEVYATVNPTQRLN 114 (346)
T ss_dssp SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-TEEEECSSCEEECT-TSSEEEEEEEEEEECS
T ss_pred CCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc-cccCCceEEEEEec-CCCEEEEEecCCccee
Confidence 45667889999999998 4554 899999999998877655443221 12222347899999 888887765
Q ss_pred -----CCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEE
Q psy6213 72 -----TNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDV 146 (330)
Q Consensus 72 -----~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~ 146 (330)
.++.+.+|+..+.......... .....+..+.+++ ++.+++. + +.+.+|+..+++.+..+..+. ....+
T Consensus 115 ~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~-~~~~~ 188 (346)
T d1jmxb_ 115 DHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAAD-DGSLYVA-G--PDIYKMDVKTGKYTVALPLRN-WNRKG 188 (346)
T ss_dssp SCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECT-TSCEEEE-S--SSEEEECTTTCCEEEEECSTT-CCCTT
T ss_pred eeeccCcceEEEEecccceeeeEEEee-eccCceEEEEecC-CCEEEEe-C--CcceEEEccCCCEEEEEecCC-Cccce
Confidence 3677888988763222222221 1223455566664 5555443 3 468999998888877765332 23334
Q ss_pred EEcCCCCcE-------------------------EEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEE
Q psy6213 147 EFNPHSPYA-------------------------FASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLAT 201 (330)
Q Consensus 147 ~~~~~~~~~-------------------------~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 201 (330)
.++|++..+ +.++..++.+.+||+.+..........+...+..+.+++++.+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (346)
T d1jmxb_ 189 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY 268 (346)
T ss_dssp BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE
T ss_pred EEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEE
Confidence 444444321 2333445567888888755555566678888999999998888877
Q ss_pred EecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCC
Q psy6213 202 ASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHK 272 (330)
Q Consensus 202 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 272 (330)
... +.+.+||..+++... .......+.+++|+|||+++++++ .++.|++||.++.+. +..+..+.
T Consensus 269 ~~~-~~v~v~d~~~~~~~~-~~~~~~~~~~va~s~DG~~l~v~~---~d~~v~v~D~~t~~~-i~~i~~p~ 333 (346)
T d1jmxb_ 269 GVL-NRLAKYDLKQRKLIK-AANLDHTYYCVAFDKKGDKLYLGG---TFNDLAVFNPDTLEK-VKNIKLPG 333 (346)
T ss_dssp EEE-SEEEEEETTTTEEEE-EEECSSCCCEEEECSSSSCEEEES---BSSEEEEEETTTTEE-EEEEECSS
T ss_pred ecC-CeEEEEECCCCcEEE-EEcCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEECccCCE-EEEEECCC
Confidence 665 579999999885443 344556799999999999866665 499999999998876 66666444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=7.5e-20 Score=150.01 Aligned_cols=276 Identities=10% Similarity=-0.032 Sum_probs=185.2
Q ss_pred ccceEEEEeeCCCee-ec-----C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc------
Q psy6213 5 SPVHKHGLKADNGLA-QP-----S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA------ 71 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~-~~-----g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------ 71 (330)
+|+.-.+.+|||+.+ ++ . ++.|.+||..+++........ . ...++|+| ++++|++++
T Consensus 2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g--~-------~~~~a~Sp-Dg~~l~v~~~~~~~~ 71 (355)
T d2bbkh_ 2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--F-------LPNPVVAD-DGSFIAHASTVFSRI 71 (355)
T ss_dssp CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--S-------SCEEEECT-TSSCEEEEEEEEEET
T ss_pred CCcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC--C-------CCceEEcC-CCCEEEEEeCCCccc
Confidence 345555779999983 32 1 567999999999877665432 1 24689999 888887653
Q ss_pred ----CCCcEEEEECCCCCCCceeEEecccc-------cceeEEEEEecCCCEEEEEe--cCCcEEEEEeecCceeeeeec
Q psy6213 72 ----TNGAVVVWNLGQISRSKQERVFNDHK-------RTVNKVSFHYVESNWLISGS--QDGTMRLFDIRCQESTKIFHS 138 (330)
Q Consensus 72 ----~dg~i~iw~~~~~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~ 138 (330)
.++.|++||..+ .+....+..+. .....+.|+| +++.++.+. .+..+.+||..+++.+..+..
T Consensus 72 ~~g~~d~~v~v~D~~t---~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (355)
T d2bbkh_ 72 ARGERTDYVEVFDPVT---LLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 147 (355)
T ss_dssp TEEEEEEEEEEECTTT---CCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred cccCCCCEEEEEECCC---CCEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEEec
Confidence 478899999988 55555443222 2345688998 777777664 457899999999988877764
Q ss_pred CCC-------CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 139 NTE-------SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 139 ~~~-------~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
... ....+.+++++..+++....++.+.+++..... ..+...+....+.+++..++.++.++.+++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (355)
T d2bbkh_ 148 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQI 221 (355)
T ss_dssp CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEE
T ss_pred CCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc------ceecceeeeccccCCCCeEEEecCCCeEEEE
Confidence 332 223455666665444444445555555544311 1233445567788888899999999999999
Q ss_pred eCCCCcccccee--c----------cccceEEEEEcCCCCeEEEEeecc-------cCCeEEEEEccCCCccceEeecCC
Q psy6213 212 DLSIKPSLEYSI--N----------TIASVSRIKWRPQRKFHLASCSLV-------VDSSVNVWDIRRPYIPLASFTEHK 272 (330)
Q Consensus 212 d~~~~~~~~~~~--~----------~~~~v~~~~~~~~~~~l~~~~~~~-------~~~~i~i~d~~~~~~~~~~~~~~~ 272 (330)
++..+....... . .......+++++++..+++..... ....|.+||..+++. +..+. +.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~-~~~~~-~~ 299 (355)
T d2bbkh_ 222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFE-MG 299 (355)
T ss_dssp ECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEE-EE
T ss_pred ecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE-EEEec-CC
Confidence 998774321111 0 112334588999999877665410 124799999998875 55554 34
Q ss_pred CCeEEEEEecCCC--EEEEeecCCeEeeeecc
Q psy6213 273 DVVSGLAWRGDPQ--LFIASSRVSIIPRAKNI 302 (330)
Q Consensus 273 ~~v~~~~~~~~~~--~l~s~~~dg~i~iw~~~ 302 (330)
..+.+++|+|||+ ++++++.|+.|++|+..
T Consensus 300 ~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~ 331 (355)
T d2bbkh_ 300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331 (355)
T ss_dssp EEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence 5688999999997 45667789999999854
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=1.6e-18 Score=142.04 Aligned_cols=266 Identities=12% Similarity=0.058 Sum_probs=171.1
Q ss_pred ccceEEEEeeCCCeee-c---------C--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc-
Q psy6213 5 SPVHKHGLKADNGLAQ-P---------S--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA- 71 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~-~---------g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~- 71 (330)
+....++|||||++++ + + ++.|++||..+++.......+.............++|+| +++.++++.
T Consensus 47 g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~ 125 (355)
T d2bbkh_ 47 GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQF 125 (355)
T ss_dssp CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEEC
T ss_pred CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecC
Confidence 3445789999999833 2 2 689999999999888776655544444444457789999 888777664
Q ss_pred -CCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee------cCCCCeE
Q psy6213 72 -TNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH------SNTESVR 144 (330)
Q Consensus 72 -~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~v~ 144 (330)
.+..+.+|+..+ .+....+..+.... .+ +......+..+.|+....+............ .+...+.
T Consensus 126 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (355)
T d2bbkh_ 126 SPAPAVGVVDLEG---KAFKRMLDVPDCYH---IF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLIN 198 (355)
T ss_dssp SSSCEEEEEETTT---TEEEEEEECCSEEE---EE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCS
T ss_pred CCCceeeeeecCC---CcEeeEEecCCcce---Ee-ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceee
Confidence 456799999987 55555554332211 11 1123334444445554444433322222111 1223345
Q ss_pred EEEEcCCCCcEEEEEecCCcEEEEecCCCccce-eeeccC----------CCCeEEEEEcCCCCEEEEEecC--------
Q psy6213 145 DVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF-YQFTAH----------SGPIFACDWHPEHAWLATASRD-------- 205 (330)
Q Consensus 145 ~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~-~~~~~~----------~~~i~~~~~~~~~~~l~~~~~d-------- 205 (330)
...+.+++. .++.++.++.+++|++..+.... .....+ ......+++++++..++....+
T Consensus 199 ~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 277 (355)
T d2bbkh_ 199 HPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT 277 (355)
T ss_dssp CCEEETTTT-EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred eccccCCCC-eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecC
Confidence 567777777 57888999999999998743211 111111 1234568899999988776544
Q ss_pred --CcEEEEeCCCCccccceeccccceEEEEEcCCCCe-EEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEec
Q psy6213 206 --KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKF-HLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 206 --g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
..|.+||..+++... .......+.+++|+|||+. +++++. .++.|++||+++++. +..+..+......+.+.+
T Consensus 278 ~~~~v~v~d~~t~~~~~-~~~~~~~~~~~a~spDG~~~l~v~~~--~d~~i~v~D~~tg~~-~~~i~~~G~~p~~i~~~d 353 (355)
T d2bbkh_ 278 ASRFVVVLDAKTGERLA-KFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESGEE-LRSVNQLGHGPQVITTAD 353 (355)
T ss_dssp CEEEEEEEETTTCCEEE-EEEEEEEECEEEECCSSSCEEEEEET--TTTEEEEEETTTCCE-EEEECCCCSSCCEEECCC
T ss_pred CCCeEEEEeCCCCcEEE-EecCCCCEEEEEEcCCCCeEEEEEEC--CCCEEEEEECCCCCE-EEEEeCcCCCccEEEeCC
Confidence 369999999885443 3345567889999999985 455555 689999999999976 777776665555555544
Q ss_pred C
Q psy6213 283 D 283 (330)
Q Consensus 283 ~ 283 (330)
+
T Consensus 354 ~ 354 (355)
T d2bbkh_ 354 M 354 (355)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.84 E-value=8.5e-18 Score=138.62 Aligned_cols=262 Identities=10% Similarity=-0.053 Sum_probs=179.3
Q ss_pred eEEEEeeCCCee-ecC-----------CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc--CC
Q psy6213 8 HKHGLKADNGLA-QPS-----------RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA--TN 73 (330)
Q Consensus 8 ~~~~~s~~~~~~-~~g-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d 73 (330)
..++|+|||+++ +++ ++.|.+||..+++.......+.............+.|+| +++.++... .+
T Consensus 69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~ 147 (373)
T d2madh_ 69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAG 147 (373)
T ss_pred ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCC
Confidence 368999999993 332 478999999999988776665544433333346788999 777665543 45
Q ss_pred CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCC------CCeEEEE
Q psy6213 74 GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNT------ESVRDVE 147 (330)
Q Consensus 74 g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~v~~~~ 147 (330)
+.+.+|+... .+... +.....++.++|.+...+++.+.|+.+.+|+...++.......+. .......
T Consensus 148 ~~~~~~~~~~---~~~~~----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (373)
T d2madh_ 148 PAVGLVVQGG---SSDDQ----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQ 220 (373)
T ss_pred CceEEeeccC---CeEEE----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEE
Confidence 6788888776 33332 334466888998555667888999999999998877665544321 1233445
Q ss_pred EcCCCCcEEEEEecCCcEEEEecCCCccc-eeeeccC----------CCCeEEEEEcCCCCEE----------EEEecCC
Q psy6213 148 FNPHSPYAFASVSENGTIQQWDVRRPEKC-FYQFTAH----------SGPIFACDWHPEHAWL----------ATASRDK 206 (330)
Q Consensus 148 ~~~~~~~~~~~~~~dg~i~i~d~~~~~~~-~~~~~~~----------~~~i~~~~~~~~~~~l----------~~~~~dg 206 (330)
+.+++ .++..+.++.+.+|+....... ......+ ......+++++++..+ +....++
T Consensus 221 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 298 (373)
T d2madh_ 221 ANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred ECCCc--eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCC
Confidence 55555 3566778899999998763211 1111111 1223445566655544 4455677
Q ss_pred cEEEEeCCCCccccceeccccceEEEEEcCCCCeE-EEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecC
Q psy6213 207 TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFH-LASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGD 283 (330)
Q Consensus 207 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 283 (330)
.+.+||..+++... ...+...+..++|+|||+.+ +++.+ .++.|++||+.+++. +..+..+....+.+++.++
T Consensus 299 ~v~~~d~~t~~~~~-~~~~~~~~~~~a~spDG~~~l~vt~~--~d~~v~v~D~~tg~~-~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 299 EVTSVTGLVGQTSS-QISLGHDVDAISVAQDGGPDLYALSA--GTEVLHIYDAGAGDQ-DQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred eEEEEECCCCcEEE-EecCCCCeeEEEECCCCCEEEEEEeC--CCCeEEEEECCCCCE-EEEECCCCCCCcEEEEecC
Confidence 89999999885444 45566789999999999864 45555 699999999999987 8888888777888877553
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=1.8e-16 Score=130.47 Aligned_cols=279 Identities=8% Similarity=-0.112 Sum_probs=182.2
Q ss_pred CCcccceEEEEeeCCCe--ee--cC-CC--eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc---
Q psy6213 2 AYLSPVHKHGLKADNGL--AQ--PS-RN--VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA--- 71 (330)
Q Consensus 2 ~H~~~v~~~~~s~~~~~--~~--~g-d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--- 71 (330)
++.++...++..++++. ++ .. ++ .+.+||..+++.......+.. ..++|+| +++.|++++
T Consensus 17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~---------~~~a~sp-Dg~~i~~~~~~~ 86 (368)
T d1mdah_ 17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL---------SLAVAGH-SGSDFALASTSF 86 (368)
T ss_dssp CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT---------CEEEECT-TSSCEEEEEEEE
T ss_pred ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC---------CcceECC-CCCEEEEEcccC
Confidence 45677778888899886 33 22 44 566778888887765543321 4588999 898888754
Q ss_pred -------CCCcEEEEECCCCCCCceeEEecccc-------cceeEEEEEecCCCEEEEEe-cCCcEEEEEeecCceeeee
Q psy6213 72 -------TNGAVVVWNLGQISRSKQERVFNDHK-------RTVNKVSFHYVESNWLISGS-QDGTMRLFDIRCQESTKIF 136 (330)
Q Consensus 72 -------~dg~i~iw~~~~~~~~~~~~~~~~~~-------~~i~~i~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~ 136 (330)
.|+.|.+||..+ .+....+..+. .....++|+| ++++++++. .++.+.+||+.+++....+
T Consensus 87 ~~~~~g~~d~~v~v~D~~t---~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~ 162 (368)
T d1mdah_ 87 ARSAKGKRTDYVEVFDPVT---FLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLT 162 (368)
T ss_dssp TTTTSSSEEEEEEEECTTT---CCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEE
T ss_pred ccccccccCCeEEEEECCC---CcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEe
Confidence 367799999988 56555554322 2234689999 777777665 5799999999999988887
Q ss_pred ecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee-----eeccCCCCeEEEEEcCCCCEEEEEecCCcEEEE
Q psy6213 137 HSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY-----QFTAHSGPIFACDWHPEHAWLATASRDKTIKVW 211 (330)
Q Consensus 137 ~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 211 (330)
..+.... +.|.++..++..+.||.+.++++........ ....+...+....+.+++..+.+. .+.+.++
T Consensus 163 ~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~ 236 (368)
T d1mdah_ 163 KSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQG 236 (368)
T ss_dssp ECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEE
T ss_pred eccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEE
Confidence 6544322 2344444677778888888888776433221 122344455667778777665543 3556666
Q ss_pred eCCCCcccccee------------ccccceEEEEEcCCCCeEEEEeecc------cCCeEEEEEccCCCccceEeecCCC
Q psy6213 212 DLSIKPSLEYSI------------NTIASVSRIKWRPQRKFHLASCSLV------VDSSVNVWDIRRPYIPLASFTEHKD 273 (330)
Q Consensus 212 d~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~~~------~~~~i~i~d~~~~~~~~~~~~~~~~ 273 (330)
+........... ........++++|++..+++..... ....|.+||..+++. +..+. +..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~-~~~~~-~~~ 314 (368)
T d1mdah_ 237 DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT-SGPIS-NGH 314 (368)
T ss_dssp ECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE-EECCE-EEE
T ss_pred eecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE-eEEec-CCC
Confidence 665442211100 0112234578899988766655410 123699999998875 44443 345
Q ss_pred CeEEEEEecCCCE--EEEeecCCeEeeeecc
Q psy6213 274 VVSGLAWRGDPQL--FIASSRVSIIPRAKNI 302 (330)
Q Consensus 274 ~v~~~~~~~~~~~--l~s~~~dg~i~iw~~~ 302 (330)
.+.+++|+|||+. ++++..|+.|++|+..
T Consensus 315 ~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred ceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence 7889999999973 4566788999999854
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=4.7e-16 Score=127.95 Aligned_cols=248 Identities=8% Similarity=-0.046 Sum_probs=163.4
Q ss_pred eEEEEeeCCCeeec----------C--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc-CCC
Q psy6213 8 HKHGLKADNGLAQP----------S--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA-TNG 74 (330)
Q Consensus 8 ~~~~~s~~~~~~~~----------g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg 74 (330)
..++|+|||+.++. | |+.|.+||..+++.......+.............++|+| ++++|+++. .++
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~ 146 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSS 146 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSS
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCC
Confidence 46899999998432 3 678999999999888777665443333323336799999 888887775 578
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee------ecCCCCeEEEEE
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF------HSNTESVRDVEF 148 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~v~~~~~ 148 (330)
.+.+||+.+ .+....+..+.... +.|.....++..+.||.+.++++......... ..+...+....+
T Consensus 147 ~v~~~d~~~---~~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (368)
T d1mdah_ 147 AAAGLSVPG---ASDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQA 219 (368)
T ss_dssp CEEEEEETT---TEEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEE
T ss_pred eEEEEECCC---CcEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccc
Confidence 999999988 66666655443322 23335677888888999999988755433222 223334456677
Q ss_pred cCCCCcEEEEEecCCcEEEEecCCCcccee-eecc----------CCCCeEEEEEcCCCCEEEEEecC---------CcE
Q psy6213 149 NPHSPYAFASVSENGTIQQWDVRRPEKCFY-QFTA----------HSGPIFACDWHPEHAWLATASRD---------KTI 208 (330)
Q Consensus 149 ~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~----------~~~~i~~~~~~~~~~~l~~~~~d---------g~i 208 (330)
.+++. .+. ..++.+++++......... .... .......++++|++..++....+ ..|
T Consensus 220 ~~~g~-~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v 296 (368)
T d1mdah_ 220 NYPGM-LVW--AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp TTTTE-EEE--CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred ccCcE-EEE--ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceE
Confidence 77764 232 3456677777654221111 0000 11223467889988877665432 249
Q ss_pred EEEeCCCCccccceeccccceEEEEEcCCCCe-EEEEeecccCCeEEEEEccCCCccceEeec
Q psy6213 209 KVWDLSIKPSLEYSINTIASVSRIKWRPQRKF-HLASCSLVVDSSVNVWDIRRPYIPLASFTE 270 (330)
Q Consensus 209 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 270 (330)
.+||..+++.... ......+..++|+|||+. ++++.. .++.|++||..+++. +..+..
T Consensus 297 ~v~D~~t~~~~~~-~~~~~~~~~~a~spDG~~~ly~s~~--~~~~v~v~D~~tgk~-~~~i~~ 355 (368)
T d1mdah_ 297 SSVTASVGQTSGP-ISNGHDSDAIIAAQDGASDNYANSA--GTEVLDIYDAASDQD-QSSVEL 355 (368)
T ss_dssp EEEESSSCCEEEC-CEEEEEECEEEECCSSSCEEEEEET--TTTEEEEEESSSCEE-EEECCC
T ss_pred EEEECCCCcEeEE-ecCCCceeEEEECCCCCEEEEEEeC--CCCeEEEEECCCCCE-EEEEEC
Confidence 9999998854433 344567889999999974 556665 689999999999876 666653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.70 E-value=4.5e-16 Score=132.31 Aligned_cols=143 Identities=11% Similarity=0.014 Sum_probs=105.6
Q ss_pred eEEEEeeCCCeeecCCCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC---------CCcEEE
Q psy6213 8 HKHGLKADNGLAQPSRNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT---------NGAVVV 78 (330)
Q Consensus 8 ~~~~~s~~~~~~~~gd~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~i 78 (330)
..+.|.+|+.++...++.+.+||+.+++....+..+ ....+...+.++.||| ++++|+.++. ++.+.+
T Consensus 20 ~~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 20 YSLRWISDHEYLYKQENNILVFNAEYGNSSVFLENS--TFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCCEECSSSEEEEESSSCEEEEETTTCCEEEEECTT--TTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred cCCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchh--hhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEE
Confidence 457899999988777888999999998865443322 2223344578999999 9999998753 567899
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecC------------------C
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSN------------------T 140 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------~ 140 (330)
||+.+ . ....+..+...+..+.|+| +++.+|... ++.+++|+..+++..+..... .
T Consensus 97 ~d~~~---~-~~~~l~~~~~~~~~~~~SP-DG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~ 170 (470)
T d2bgra1 97 YDLNK---R-QLITEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (470)
T ss_dssp EETTT---T-EECCSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EECCC---C-cccccccCCcccccccccc-CcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeec
Confidence 99987 3 3455777889999999999 888888865 678999999888765443221 2
Q ss_pred CCeEEEEEcCCCCcEEEEEe
Q psy6213 141 ESVRDVEFNPHSPYAFASVS 160 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~~~ 160 (330)
+....+.|+|+|++ ++...
T Consensus 171 ~~~~~~~wSPDGk~-ia~~~ 189 (470)
T d2bgra1 171 SAYSALWWSPNGTF-LAYAQ 189 (470)
T ss_dssp SSSBCEEECTTSSE-EEEEE
T ss_pred CCccccEECCCCCc-cceeE
Confidence 23456789999996 54443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.67 E-value=6.8e-15 Score=120.86 Aligned_cols=269 Identities=7% Similarity=0.041 Sum_probs=170.1
Q ss_pred eecC--CCeEEEEEcCCcceeeeeceee-cc--ccc--------------------cccceeeeeecccCCcEEEEE-cC
Q psy6213 19 AQPS--RNVFKIFLIKDTEFVETHNLRV-GK--NIN--------------------LNFSCNDVAWSCIEENHIATG-AT 72 (330)
Q Consensus 19 ~~~g--d~~i~iw~~~~~~~~~~~~~~~-~~--~~~--------------------~~~~v~~~~~~~~~~~~l~~~-~~ 72 (330)
+++| +|.|++|++.+++.+..+..-. .. ... +.-.......+| +|++|++. ..
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcCC
Confidence 4555 9999999999988776553311 00 000 001123445678 78877555 56
Q ss_pred CCcEEEEECCCCCCCceeEEec-ccccceeEEEEEecCCC--EEEEEecCC-----------------cEEEEEeecCce
Q psy6213 73 NGAVVVWNLGQISRSKQERVFN-DHKRTVNKVSFHYVESN--WLISGSQDG-----------------TMRLFDIRCQES 132 (330)
Q Consensus 73 dg~i~iw~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~--~l~~~~~d~-----------------~i~i~d~~~~~~ 132 (330)
+++|.++|+++ .+....+. .+...+..++|+| +++ +++..+.+. .+..+|..+.+.
T Consensus 93 ~~rVavIDl~t---~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v 168 (441)
T d1qnia2 93 NTRVARIRLDI---MKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV 168 (441)
T ss_dssp TTEEEEEETTT---TEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred CCEEEEEECCC---CcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence 78999999998 56655543 3567889999998 666 344443321 234477777776
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEEec----------------------------------------CCcEEEEecCC
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASVSE----------------------------------------NGTIQQWDVRR 172 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----------------------------------------dg~i~i~d~~~ 172 (330)
..++... .....+.++|+|++++++... ++.+.+++...
T Consensus 169 ~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~ 247 (441)
T d1qnia2 169 AWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE 247 (441)
T ss_dssp EEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS
T ss_pred eEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC
Confidence 6666543 457789999999975555432 22333333332
Q ss_pred CccceeeeccCCCCeEEEEEcCCCCEEE-EEecCCcEEEEeCCCCcccc-----------ceeccccceEEEEEcCCCCe
Q psy6213 173 PEKCFYQFTAHSGPIFACDWHPEHAWLA-TASRDKTIKVWDLSIKPSLE-----------YSINTIASVSRIKWRPQRKF 240 (330)
Q Consensus 173 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~ 240 (330)
...+..+.... ....+.++|||++++ ++..++++.+||+.+..... ......-.....+|+++|..
T Consensus 248 -~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~ 325 (441)
T d1qnia2 248 -SEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA 325 (441)
T ss_dssp -CSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred -CceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE
Confidence 33444454433 457899999999875 45689999999987643210 00111123455689999974
Q ss_pred EEEEeecccCCeEEEEEccC---------CCccceEe-----ecCCCCeEEEEEecCCCEEEEe---ecCCeEee
Q psy6213 241 HLASCSLVVDSSVNVWDIRR---------PYIPLASF-----TEHKDVVSGLAWRGDPQLFIAS---SRVSIIPR 298 (330)
Q Consensus 241 l~~~~~~~~~~~i~i~d~~~---------~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~---~~dg~i~i 298 (330)
+++.. .|..|..|++.. ....+..+ .+|...+.+.+++|||++|+++ |.|..+-+
T Consensus 326 -yts~~--~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~ 397 (441)
T d1qnia2 326 -YTTLF--IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPV 397 (441)
T ss_dssp -EEEET--TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCC
T ss_pred -EEccc--ccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcCC
Confidence 67776 799999999842 11112233 5677777778899999999999 55654443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.60 E-value=6.5e-14 Score=114.96 Aligned_cols=227 Identities=11% Similarity=0.102 Sum_probs=152.7
Q ss_pred EEEEEcCCCcEEEEECCCCCCCceeEEecc------------------------------cccceeEEEEEecCCCEEEE
Q psy6213 66 HIATGATNGAVVVWNLGQISRSKQERVFND------------------------------HKRTVNKVSFHYVESNWLIS 115 (330)
Q Consensus 66 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------------------------------~~~~i~~i~~~~~~~~~l~~ 115 (330)
.+++++.+|.|++|++.+ ++.++.+.. |..........| ||++|++
T Consensus 13 ~f~Sgg~sG~V~V~dlpS---~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV 88 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPS---MRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFI 88 (441)
T ss_dssp EEEECBTTCCEEEEEETT---TEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEE
T ss_pred EEEeCCCCCcEEEEeCCC---CcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEE
Confidence 366788899999999977 444444321 223344455577 6777755
Q ss_pred E-ecCCcEEEEEeecCceeeeeec-CCCCeEEEEEcCCCCcEEEEEecCCcE------------------EEEecCCCcc
Q psy6213 116 G-SQDGTMRLFDIRCQESTKIFHS-NTESVRDVEFNPHSPYAFASVSENGTI------------------QQWDVRRPEK 175 (330)
Q Consensus 116 ~-~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~dg~i------------------~i~d~~~~~~ 175 (330)
. ..+++|.++|+++++....+.. ....+..++|+|+++..++++..+..+ ..+|..+ .+
T Consensus 89 ~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t-~~ 167 (441)
T d1qnia2 89 NDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET-MD 167 (441)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT-CS
T ss_pred EcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc-ce
Confidence 4 5688999999999988877653 466799999999998655555444444 3466665 33
Q ss_pred ceeeeccCCCCeEEEEEcCCCCEEEEEecCC-----------------------------------------cEEEEeCC
Q psy6213 176 CFYQFTAHSGPIFACDWHPEHAWLATASRDK-----------------------------------------TIKVWDLS 214 (330)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------------------------~i~i~d~~ 214 (330)
...++.. .+....+.++|+|+++++.+.+. .+.+++..
T Consensus 168 v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~ 246 (441)
T d1qnia2 168 VAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG 246 (441)
T ss_dssp EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS
T ss_pred eeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc
Confidence 3333332 34578899999999998887542 22333322
Q ss_pred CCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc-------ceEeecC---CCCeEEEEEecCC
Q psy6213 215 IKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP-------LASFTEH---KDVVSGLAWRGDP 284 (330)
Q Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~-------~~~~~~~---~~~v~~~~~~~~~ 284 (330)
.. ......+.......+.++|||+++++++. .++++.+||+++.... ...+.++ .-.....+|+++|
T Consensus 247 ~~-~v~~~IPvgksPhGv~vSPDGkyl~~~~~--~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g 323 (441)
T d1qnia2 247 ES-EFTRYIPVPKNPHGLNTSPDGKYFIANGK--LSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG 323 (441)
T ss_dssp SC-SSEEEECCBSSCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred CC-ceEEEEeCCCCccCceECCCCCEEEEeCC--cCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc
Confidence 22 23333444555778999999999888888 8999999998753210 1111111 1234567899999
Q ss_pred CEEEEeecCCeEeeeec
Q psy6213 285 QLFIASSRVSIIPRAKN 301 (330)
Q Consensus 285 ~~l~s~~~dg~i~iw~~ 301 (330)
+...+..-|..|..|+.
T Consensus 324 ~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 324 NAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp EEEEEETTTTEEEEEEH
T ss_pred eEEEcccccceEEEecc
Confidence 99999999999999984
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=1.9e-11 Score=95.31 Aligned_cols=242 Identities=13% Similarity=0.111 Sum_probs=150.4
Q ss_pred eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCC---cEEEEECCCCCCCceeEEeccccccee
Q psy6213 25 VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG---AVVVWNLGQISRSKQERVFNDHKRTVN 101 (330)
Q Consensus 25 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~i~ 101 (330)
.|.|.|.+........... ..+...+||| +|+.||...... .+.+.+... .....+..+.....
T Consensus 20 ~l~i~d~dG~~~~~l~~~~--------~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 86 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSP--------QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLAN----GAVRQVASFPRHNG 86 (269)
T ss_dssp EEEEEETTSCSCEEEEEES--------SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTT----CCEEEEECCSSCEE
T ss_pred EEEEEcCCCCCcEEEecCC--------CceeeeEECC-CCCEEEEEEeeccCcceeeeeccc----CceeEEeeeecccc
Confidence 5777787765544433222 1146789999 999998764432 355556554 33344455678888
Q ss_pred EEEEEecCCCEEEEEe-cCCcEEEEEeecCce-eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceee
Q psy6213 102 KVSFHYVESNWLISGS-QDGTMRLFDIRCQES-TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQ 179 (330)
Q Consensus 102 ~i~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~ 179 (330)
...|+| ++..++... .++...++....... ...............+++++...+++...+|...+|...........
T Consensus 87 ~~~~sp-dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~ 165 (269)
T d2hqsa1 87 APAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR 165 (269)
T ss_dssp EEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE
T ss_pred cceecC-CCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccccee
Confidence 999999 666666544 444444444433322 22222244445566788888866777766776555544332333444
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEecCC-cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEc
Q psy6213 180 FTAHSGPIFACDWHPEHAWLATASRDK-TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDI 258 (330)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~ 258 (330)
............|+|+++.++..+.++ ...+|......................|+|||+.|+..........|+++++
T Consensus 166 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~ 245 (269)
T d2hqsa1 166 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 245 (269)
T ss_dssp CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred eecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 445566778889999999888776544 4444433333223334444556678899999999877776323457889999
Q ss_pred cCCCccceEeecCCCCeEEEEEec
Q psy6213 259 RRPYIPLASFTEHKDVVSGLAWRG 282 (330)
Q Consensus 259 ~~~~~~~~~~~~~~~~v~~~~~~~ 282 (330)
.... ...+....+.+...+|+|
T Consensus 246 dg~~--~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 246 DGRF--KARLPATDGQVKFPAWSP 267 (269)
T ss_dssp TSCC--EEECCCSSSEEEEEEECC
T ss_pred CCCC--EEEEeCCCCcEEeEEeCC
Confidence 8765 355666677788899998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.55 E-value=1.5e-12 Score=110.29 Aligned_cols=103 Identities=10% Similarity=0.087 Sum_probs=72.0
Q ss_pred CcccceEEEEeeCCCeeecC-----------CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc
Q psy6213 3 YLSPVHKHGLKADNGLAQPS-----------RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA 71 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~~~~g-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 71 (330)
|...|.++.|||||++|+.. ++.+.|||+++++... +..+ ...+..+.||| +++.+|...
T Consensus 60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~-l~~~-------~~~~~~~~~SP-DG~~ia~~~ 130 (470)
T d2bgra1 60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERI-------PNNTQWVTWSP-VGHKLAYVW 130 (470)
T ss_dssp SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCC-------CTTEEEEEECS-STTCEEEEE
T ss_pred ccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc-cccC-------Ccccccccccc-CcceeeEee
Confidence 56789999999999994432 4678999999887543 2222 22357899999 999999864
Q ss_pred CCCcEEEEECCCCCCCceeEEecc------------------cccceeEEEEEecCCCEEEEEecC
Q psy6213 72 TNGAVVVWNLGQISRSKQERVFND------------------HKRTVNKVSFHYVESNWLISGSQD 119 (330)
Q Consensus 72 ~dg~i~iw~~~~~~~~~~~~~~~~------------------~~~~i~~i~~~~~~~~~l~~~~~d 119 (330)
++.+.+|+... +...+.... ..+....+.|+| +++.|+....|
T Consensus 131 -~~~l~~~~~~~---g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d 191 (470)
T d2bgra1 131 -NNDIYVKIEPN---LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFN 191 (470)
T ss_dssp -TTEEEEESSTT---SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEE
T ss_pred -cccceEEECCC---CceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEec
Confidence 67899999877 333222211 123346688999 88888887654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.53 E-value=3.7e-11 Score=97.88 Aligned_cols=263 Identities=8% Similarity=-0.006 Sum_probs=148.6
Q ss_pred cccceEEEEeeCCCeeecC-CCeEEEEEcCCcc-eeeeeceeeccccccccceeeeeecccCCcEEE--EEc-CCCcEEE
Q psy6213 4 LSPVHKHGLKADNGLAQPS-RNVFKIFLIKDTE-FVETHNLRVGKNINLNFSCNDVAWSCIEENHIA--TGA-TNGAVVV 78 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~~~~g-d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--~~~-~dg~i~i 78 (330)
...+.-|+|+|+++++.+. .+.+..|.+.... .........+ .....+++++ +++.++ ++. ..+.+..
T Consensus 39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~ 111 (365)
T d1jofa_ 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIG------GHPRANDADT-NTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECC------SSGGGGCTTS-CCEEEEEEECSSTTCCEEE
T ss_pred CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCC------CCcEEEEECC-CCCEEEEEEecCCCCEEEE
Confidence 3456679999999986555 7778888776432 2222111111 1135677888 666433 222 1344444
Q ss_pred EECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEE
Q psy6213 79 WNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFAS 158 (330)
Q Consensus 79 w~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 158 (330)
+.+.. ++........+...++...- ...-......+.++.|+|++++++++
T Consensus 112 ~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 112 NPFYK-------------------------FAGYGNVFSVSETGKLEKNV----QNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp EEESS-------------------------SCCEEEEEEECTTCCEEEEE----EEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred eEccC-------------------------CCCcceeEeeeecceecCcc----cCcccCCCCcceEEEECCCCCEEEEe
Confidence 43322 11111111111111111100 00011123347899999999976666
Q ss_pred EecCCcEEEEecCCCcccee--e--eccCCCCeEEEEEcCCCCEEEEEe-cCCcEEEEeCCCCccccce-----------
Q psy6213 159 VSENGTIQQWDVRRPEKCFY--Q--FTAHSGPIFACDWHPEHAWLATAS-RDKTIKVWDLSIKPSLEYS----------- 222 (330)
Q Consensus 159 ~~~dg~i~i~d~~~~~~~~~--~--~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~----------- 222 (330)
......|.+|+....+.... . ..........++|+|+++++.+.. .+++|.+|++.........
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 242 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccc
Confidence 55566888988765333221 1 112345788999999999886555 6788999998765321111
Q ss_pred --------eccccceEEEEEcCCCCeEEEEeec---ccCCeEEEEEccCCCccceEe-----ecCCCCeEEEEEec-CCC
Q psy6213 223 --------INTIASVSRIKWRPQRKFHLASCSL---VVDSSVNVWDIRRPYIPLASF-----TEHKDVVSGLAWRG-DPQ 285 (330)
Q Consensus 223 --------~~~~~~v~~~~~~~~~~~l~~~~~~---~~~~~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~ 285 (330)
.........+.++|+|++++++... .....|..|++.......... ........+++++| +|+
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~ 322 (365)
T d1jofa_ 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred ccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCC
Confidence 0112346688999999998777541 012347788876543211111 11234567899998 889
Q ss_pred EEEEe-ecCCeEeeeecc
Q psy6213 286 LFIAS-SRVSIIPRAKNI 302 (330)
Q Consensus 286 ~l~s~-~~dg~i~iw~~~ 302 (330)
+|+++ ..++.|.+|+..
T Consensus 323 ~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 323 WMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEEECSSSCEEEEEEEE
T ss_pred EEEEEeCCCCeEEEEEEe
Confidence 77666 567899999754
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=1.4e-11 Score=95.63 Aligned_cols=237 Identities=9% Similarity=0.046 Sum_probs=154.9
Q ss_pred eeeeeecccCCcEEEEE-cCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 54 CNDVAWSCIEENHIATG-ATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
...+++.+ +++..++. ...+.+..++.... ........ -......+++.+ +++++++....+.+++++-.+...
T Consensus 16 P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~--~~~~~~~~-~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 16 PSGVAVDS-AGNVYVTSEGMYGRVVKLATGST--GTTVLPFN-GLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp EEEEEECT-TCCEEEEECSSSCEEEEEC------CEEECCCC-SCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred CCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCc--eEEEeccC-CccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence 47899998 88866654 45577777766541 12221122 223457888987 788777777666666665544443
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEe
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWD 212 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 212 (330)
+.... .......+++.++++ ++++-..+..+..++............ .......++++|+++++++...++.|..+|
T Consensus 91 ~~~~~-~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d 167 (260)
T d1rwia_ 91 VLPFD-GLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 167 (260)
T ss_dssp ECCCC-SCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCC-SCCSCCEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eeeee-eeeecccccccccce-eEeeccccccccccccccceeeeeeec-ccCCcceeeecCCCCEeeeccccccccccc
Confidence 33332 235678999999987 566666667787887765322222222 234567899999999888888888999999
Q ss_pred CCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee-cCCCCeEEEEEecCCCEEEEee
Q psy6213 213 LSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT-EHKDVVSGLAWRGDPQLFIASS 291 (330)
Q Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~ 291 (330)
...................+++.++|. |+++.. ..+.|..++...... .... ..-....+|+++++|.++++-.
T Consensus 168 ~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~--~~~~i~~~~~~~~~~--~~~~~~~~~~P~~i~~d~~g~l~vad~ 242 (260)
T d1rwia_ 168 AESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEH--NTNQVVKLLAGSTTS--TVLPFTGLNTPLAVAVDSDRTVYVADR 242 (260)
T ss_dssp TTTCCEEECCCSSCCSEEEEEECTTCC-EEEEET--TTTEEEEECTTCSCC--EECCCCSCCCEEEEEECTTCCEEEEEG
T ss_pred cccceeeeeeccccCCCccceeeeeee-eeeeec--CCCEEEEEeCCCCeE--EEEccCCCCCeEEEEEeCCCCEEEEEC
Confidence 876644333334456678999999997 466665 578888887665432 2222 2224678999999999888877
Q ss_pred cCCeEeeeeccc
Q psy6213 292 RVSIIPRAKNIK 303 (330)
Q Consensus 292 ~dg~i~iw~~~~ 303 (330)
.+++|+......
T Consensus 243 ~~~rI~~i~~~~ 254 (260)
T d1rwia_ 243 GNDRVVKLTSLE 254 (260)
T ss_dssp GGTEEEEECCCG
T ss_pred CCCEEEEEeCCC
Confidence 778887665543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.49 E-value=3.3e-11 Score=93.42 Aligned_cols=239 Identities=6% Similarity=0.001 Sum_probs=151.5
Q ss_pred CcccceEEEEeeCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEE
Q psy6213 3 YLSPVHKHGLKADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVW 79 (330)
Q Consensus 3 H~~~v~~~~~s~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 79 (330)
|.-.-..+++.++|++ ++.. .+.+..++........ ..... . .....+++++ +++++++....+.++++
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-~~~~~-----~-~~p~gvav~~-~g~i~v~d~~~~~i~~~ 83 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNG-----L-YQPQGLAVDG-AGTVYVTDFNNRVVTLA 83 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-CCCCS-----C-CSCCCEEECT-TCCEEEEETTTEEEEEC
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE-eccCC-----c-cCceEEEEcC-CCCEEEeeeeeceeeee
Confidence 3444578999999997 5544 6777777665433221 11111 1 1137889998 88887777766666665
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEE
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
+..+ ........ ......++++.+ +++++++-..+..+..++...................+++.+++. ++++.
T Consensus 84 ~~~~---~~~~~~~~-~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~ 157 (260)
T d1rwia_ 84 AGSN---NQTVLPFD-GLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTD 157 (260)
T ss_dssp TTCS---CCEECCCC-SCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEE
T ss_pred eecc---ceeeeeee-eeeecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC-Eeeec
Confidence 4433 22222222 235568899987 778877766667777777654433222222234567899999987 67887
Q ss_pred ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCC
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (330)
..++.|..+|...... .............+++.++|+++++....+.|..++...................|+++++|.
T Consensus 158 ~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~ 236 (260)
T d1rwia_ 158 TDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT 236 (260)
T ss_dssp GGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCC
T ss_pred ccccccccccccccee-eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCC
Confidence 8888999999875332 222223445678999999999888888888899888765533332223335678999999997
Q ss_pred eEEEEeecccCCeEEEEEcc
Q psy6213 240 FHLASCSLVVDSSVNVWDIR 259 (330)
Q Consensus 240 ~l~~~~~~~~~~~i~i~d~~ 259 (330)
. +++.. .+++|+.++..
T Consensus 237 l-~vad~--~~~rI~~i~~~ 253 (260)
T d1rwia_ 237 V-YVADR--GNDRVVKLTSL 253 (260)
T ss_dssp E-EEEEG--GGTEEEEECCC
T ss_pred E-EEEEC--CCCEEEEEeCC
Confidence 4 55544 47777766543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.44 E-value=4.3e-10 Score=89.39 Aligned_cols=244 Identities=12% Similarity=0.112 Sum_probs=155.1
Q ss_pred ceEEEEeeCCCe-eecC--------CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEE
Q psy6213 7 VHKHGLKADNGL-AQPS--------RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVV 77 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g--------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 77 (330)
.-.++|.|+|++ ++.. ++.|..||.+++............. ......++|.+ +++.++++...+.+.
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~---~g~P~Gl~~~~-dg~~l~vad~~~~i~ 95 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGY---GGIPAGCQCDR-DANQLFVADMRLGLL 95 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTE---ECCEEEEEECS-SSSEEEEEETTTEEE
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccC---CCcceeEEEeC-CCCEEEEEECCCeEE
Confidence 456789999998 4322 4678888888776443322221111 11137899999 888888777777788
Q ss_pred EEECCCCCCCceeEEecccc----cceeEEEEEecCCCEEEEEec---------------CCcEEEEEeecCceeeeeec
Q psy6213 78 VWNLGQISRSKQERVFNDHK----RTVNKVSFHYVESNWLISGSQ---------------DGTMRLFDIRCQESTKIFHS 138 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~~~~----~~i~~i~~~~~~~~~l~~~~~---------------d~~i~i~d~~~~~~~~~~~~ 138 (330)
.++.+. ........... ...+.+++.+ ++++.++-.. .|.|..++.+ ++......
T Consensus 96 ~~~~~g---~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~- 169 (314)
T d1pjxa_ 96 VVQTDG---TFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT- 169 (314)
T ss_dssp EEETTS---CEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred EEeCCC---cEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC-
Confidence 888765 21111111111 1357789997 7787776432 2344444432 33332222
Q ss_pred CCCCeEEEEEcCCCC----cEEEEEecCCcEEEEecCCCccce-----eeecc-CCCCeEEEEEcCCCCEEEEEecCCcE
Q psy6213 139 NTESVRDVEFNPHSP----YAFASVSENGTIQQWDVRRPEKCF-----YQFTA-HSGPIFACDWHPEHAWLATASRDKTI 208 (330)
Q Consensus 139 ~~~~v~~~~~~~~~~----~~~~~~~~dg~i~i~d~~~~~~~~-----~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i 208 (330)
.-...+.++|+|+++ .++++-+..+.|..||+...+... ..+.. .......+++.++|++.++....+.|
T Consensus 170 ~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I 249 (314)
T d1pjxa_ 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE
Confidence 223456789998764 456666778889999887543321 11111 22345689999999988888888999
Q ss_pred EEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCC
Q psy6213 209 KVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPY 262 (330)
Q Consensus 209 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~ 262 (330)
.+||.+.+............+++++|.|+++.|+++.+ .++.|..+++...-
T Consensus 250 ~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~--~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEH--ENNAVWKFEWQRNG 301 (314)
T ss_dssp EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEET--TTTEEEEEECSSCB
T ss_pred EEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEEC--CCCcEEEEECCCCC
Confidence 99998877444333334467899999999987777776 68999988876543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.44 E-value=7.4e-10 Score=86.60 Aligned_cols=234 Identities=9% Similarity=0.125 Sum_probs=156.4
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecc------cccceeEEEEEecCCCEEEEE-ecCCcEEEEEe
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFND------HKRTVNKVSFHYVESNWLISG-SQDGTMRLFDI 127 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~i~~i~~~~~~~~~l~~~-~~d~~i~i~d~ 127 (330)
..++++| +++++++-..++.|++||.+. +.+..+.. .......+.+.+..+..+++. +.++.|..++.
T Consensus 26 ~gvavd~-dg~i~VaD~~n~rI~v~d~~G----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 26 SGVAVNA-QNDIIVADTNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp EEEEECT-TCCEEEEEGGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred cEEEEcC-CCCEEEEECCCCEEEEEeCCC----CEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence 7899999 888888877788999998653 44443321 112334566665334444443 34557777775
Q ss_pred ecCceeeeeec-CCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeee--ccCCCCeEEEEEcCCCCEEEEEec
Q psy6213 128 RCQESTKIFHS-NTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQF--TAHSGPIFACDWHPEHAWLATASR 204 (330)
Q Consensus 128 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~ 204 (330)
.++....+.. .......+++.+++. ++++....+.+.+++.. ++.+..+ ..+......+++.++++.+++...
T Consensus 101 -~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~--g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~ 176 (279)
T d1q7fa_ 101 -YGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 176 (279)
T ss_dssp -TSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred -cccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC--CceeecccccccccccceeeeccceeEEeeecc
Confidence 3555555532 345678899999987 57776767778888865 3444443 345567889999999999888888
Q ss_pred CCcEEEEeCCCCcccccee--ccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec--CCCCeEEEEE
Q psy6213 205 DKTIKVWDLSIKPSLEYSI--NTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE--HKDVVSGLAW 280 (330)
Q Consensus 205 dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~ 280 (330)
.+.|++||.... ...... ........+++.++|+.+++-.. .++.|.+|+.. ++. +..+.. .......+++
T Consensus 177 ~~~V~~~d~~G~-~~~~~g~~g~~~~P~giavD~~G~i~Vad~~--~~~~v~~f~~~-G~~-~~~~~~~~~~~~p~~vav 251 (279)
T d1q7fa_ 177 AHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNH--NNFNLTIFTQD-GQL-ISALESKVKHAQCFDVAL 251 (279)
T ss_dssp GTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECS--SSCEEEEECTT-SCE-EEEEEESSCCSCEEEEEE
T ss_pred ccceeeeecCCc-eeeeecccccccCCcccccccCCeEEEEECC--CCcEEEEECCC-CCE-EEEEeCCCCCCCEeEEEE
Confidence 999999997654 322221 23445789999999985444333 35679999854 443 444432 2346789999
Q ss_pred ecCCCEEEEeecCCeEeeeeccc
Q psy6213 281 RGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 281 ~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
.|||.+++ ++.+..|++|+-..
T Consensus 252 ~~dG~l~V-~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 252 MDDGSVVL-ASKDYRLYIYRYVQ 273 (279)
T ss_dssp ETTTEEEE-EETTTEEEEEECSC
T ss_pred eCCCcEEE-EeCCCeEEEEEeee
Confidence 99997555 56789999997543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.41 E-value=2.1e-10 Score=90.92 Aligned_cols=229 Identities=9% Similarity=0.074 Sum_probs=152.9
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
+..+++.| +++++++...+++|..|+... . ...+......+.+++|.| +++++++...++.+..++.......
T Consensus 30 ~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g----~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~ 102 (302)
T d2p4oa1 30 LENLASAP-DGTIFVTNHEVGEIVSITPDG----N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGT 102 (302)
T ss_dssp EEEEEECT-TSCEEEEETTTTEEEEECTTC----C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSC
T ss_pred cCCEEECC-CCCEEEEeCCCCEEEEEeCCC----C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccc
Confidence 57899999 999999999999888887553 2 233445567899999998 8899998888889999887654322
Q ss_pred -eee--ecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec---------cCCCCeEEEEEcCCCCEEEE
Q psy6213 134 -KIF--HSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT---------AHSGPIFACDWHPEHAWLAT 201 (330)
Q Consensus 134 -~~~--~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~ 201 (330)
..+ .........+++.+++. ++++.+.++.+..+|.......+.... ........+.+.. +.++++
T Consensus 103 ~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~ 180 (302)
T d2p4oa1 103 VETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVS 180 (302)
T ss_dssp EEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEE
T ss_pred eeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cceeee
Confidence 112 12345688999999997 677777788888888776322211111 1122455666653 345666
Q ss_pred EecCCcEEEEeCCCCccccc--eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEE
Q psy6213 202 ASRDKTIKVWDLSIKPSLEY--SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLA 279 (330)
Q Consensus 202 ~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 279 (330)
.+..+.|..++......... ..........++++++|.. +++.. .++.|..++.......+......-...++++
T Consensus 181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l-~va~~--~~~~V~~i~p~G~~~~~~~~~~~~~~pt~va 257 (302)
T d2p4oa1 181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNL-YGATH--IYNSVVRIAPDRSTTIIAQAEQGVIGSTAVA 257 (302)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCE-EEECB--TTCCEEEECTTCCEEEEECGGGTCTTEEEEE
T ss_pred cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCE-EEEEc--CCCcEEEECCCCCEEEEEecCCCCCCceEEE
Confidence 67888899888776533221 1123345667999999985 44444 4888999887644221222233335688999
Q ss_pred E---ecCCCEEEEeecCC
Q psy6213 280 W---RGDPQLFIASSRVS 294 (330)
Q Consensus 280 ~---~~~~~~l~s~~~dg 294 (330)
| .+|++.|+.++..+
T Consensus 258 fg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 258 FGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp ECCSTTTTTEEEEEECTT
T ss_pred EcCCCCCCCEEEEECCCC
Confidence 9 66888887766543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=1.3e-09 Score=84.63 Aligned_cols=217 Identities=10% Similarity=0.030 Sum_probs=134.4
Q ss_pred cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC---cEEEEEeecCceeeeeecCCCCeEEEEEcCC
Q psy6213 75 AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG---TMRLFDIRCQESTKIFHSNTESVRDVEFNPH 151 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 151 (330)
.|.+.|.+. .....+..+...+..-+||| ||+.||...... .+.+.+...+.. ..+..+........|+|+
T Consensus 20 ~l~i~d~dG----~~~~~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spd 93 (269)
T d2hqsa1 20 ELRVSDYDG----YNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPD 93 (269)
T ss_dssp EEEEEETTS----CSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTT
T ss_pred EEEEEcCCC----CCcEEEecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCC
Confidence 466767654 23333344567788999999 888887654432 366666655544 344446778889999999
Q ss_pred CCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEE-ecCCc--EEEEeCCCCccccceeccccc
Q psy6213 152 SPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATA-SRDKT--IKVWDLSIKPSLEYSINTIAS 228 (330)
Q Consensus 152 ~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~--i~i~d~~~~~~~~~~~~~~~~ 228 (330)
++.++.....++...++.......................+++++..+... ..+|. |...++... ...........
T Consensus 94 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~-~~~~~~~~~~~ 172 (269)
T d2hqsa1 94 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-APQRITWEGSQ 172 (269)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-CCEECCCSSSE
T ss_pred CCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc-cceeeeccccc
Confidence 997666665565555544443233333333344555566777777655444 44554 555566555 23333344567
Q ss_pred eEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC---CeEeeeec
Q psy6213 229 VSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV---SIIPRAKN 301 (330)
Q Consensus 229 v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~iw~~ 301 (330)
.....|+|+++.++.... ..+...+|....... ......+........|+|||+.|+..+.. ..|+++..
T Consensus 173 ~~~~~~spdg~~~~~~~~--~~~~~~i~~~~~~~~-~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~ 245 (269)
T d2hqsa1 173 NQDADVSSDGKFMVMVSS--NGGQQHIAKQDLATG-GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 245 (269)
T ss_dssp EEEEEECTTSSEEEEEEE--CSSCEEEEEEETTTC-CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred ccccccccccceeEEEee--cCCceeeeEeecccc-cceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 778899999999887776 455555555443333 22344455667888999999998866543 34566654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.40 E-value=1.2e-10 Score=92.35 Aligned_cols=228 Identities=9% Similarity=0.041 Sum_probs=148.9
Q ss_pred cceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCC
Q psy6213 6 PVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQ 83 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 83 (330)
.+..++++|||+++++. ++.|..|+.+. +...... ....+.+++|.| +++++++...++.+..++...
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~~~~~--------~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~ 98 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT--------VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVK 98 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE--------CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEEC
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CEEEEEc--------CCCCcceEEEcC-CCCeEEEecCCceEEEEEecc
Confidence 36689999999995555 88888888654 3222211 122358999999 899999888888888888755
Q ss_pred CCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee----------cCCCCeEEEEEcCCCC
Q psy6213 84 ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH----------SNTESVRDVEFNPHSP 153 (330)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----------~~~~~v~~~~~~~~~~ 153 (330)
.................+.+.+.+ +++++++.+.++.+..+|...+....... ........+.+. +.
T Consensus 99 ~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~ 175 (302)
T d2p4oa1 99 SDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GN 175 (302)
T ss_dssp TTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TT
T ss_pred cccceeeccccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CC
Confidence 221111111122345678899987 88888888888888888877654322211 111234556554 44
Q ss_pred cEEEEEecCCcEEEEecCCCcccee-eeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc-eeccccceEE
Q psy6213 154 YAFASVSENGTIQQWDVRRPEKCFY-QFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY-SINTIASVSR 231 (330)
Q Consensus 154 ~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~ 231 (330)
+++++.+..+.|+.++......... ...........+++.++|+++++...++.|..++......... ........++
T Consensus 176 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~ 255 (302)
T d2p4oa1 176 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTA 255 (302)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEE
T ss_pred ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceE
Confidence 5788888889999998875332211 1112234567899999999888888899999998765422221 1223356889
Q ss_pred EEE---cCCCCeEEEEee
Q psy6213 232 IKW---RPQRKFHLASCS 246 (330)
Q Consensus 232 ~~~---~~~~~~l~~~~~ 246 (330)
++| .+|++.|+++..
T Consensus 256 vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 256 VAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp EEECCSTTTTTEEEEEEC
T ss_pred EEEcCCCCCCCEEEEECC
Confidence 999 678887766653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.39 E-value=8.8e-10 Score=86.16 Aligned_cols=240 Identities=11% Similarity=0.066 Sum_probs=157.1
Q ss_pred cceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEE-cCCCcEEEEECC
Q psy6213 6 PVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATG-ATNGAVVVWNLG 82 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~ 82 (330)
....++++|+|+++++. ++.|++||.+ ++....+..... ..........+++.+..+..+++. +.++.|..++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK-RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS-STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCC-CcccccccccccccccccccceeccCCcccccccccc
Confidence 35789999999995554 8999999966 555554422211 111122235666665344455443 345567777654
Q ss_pred CCCCCceeEEec-ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee--cCCCCeEEEEEcCCCCcEEEEE
Q psy6213 83 QISRSKQERVFN-DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH--SNTESVRDVEFNPHSPYAFASV 159 (330)
Q Consensus 83 ~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~ 159 (330)
. .....+. ........+++.+ ++.++++....+.+.+++.. ++.+..+. .+......+++.+++. ++++.
T Consensus 102 g----~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d 174 (279)
T d1q7fa_ 102 G----QFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISD 174 (279)
T ss_dssp S----CEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-EEEEE
T ss_pred c----cceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecccee-EEeee
Confidence 3 4444442 3345567888886 77888877777888888864 55555543 2446678899999887 78888
Q ss_pred ecCCcEEEEecCCCccceeeec--cCCCCeEEEEEcCCCCEEEEEec-CCcEEEEeCCCCcccccee--ccccceEEEEE
Q psy6213 160 SENGTIQQWDVRRPEKCFYQFT--AHSGPIFACDWHPEHAWLATASR-DKTIKVWDLSIKPSLEYSI--NTIASVSRIKW 234 (330)
Q Consensus 160 ~~dg~i~i~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~--~~~~~v~~~~~ 234 (330)
...+.|++||... +.+..+. +.......+++.++|+++++-.. ++.|.+|+.. ++.+.... ........+++
T Consensus 175 ~~~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav 251 (279)
T d1q7fa_ 175 NRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVAL 251 (279)
T ss_dssp GGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEE
T ss_pred ccccceeeeecCC--ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCCEeEEEE
Confidence 8889999999763 4444442 34456789999999997777554 4569999854 43322221 12346789999
Q ss_pred cCCCCeEEEEeecccCCeEEEEEccCC
Q psy6213 235 RPQRKFHLASCSLVVDSSVNVWDIRRP 261 (330)
Q Consensus 235 ~~~~~~l~~~~~~~~~~~i~i~d~~~~ 261 (330)
.|+|.. +++. .+..|++|.....
T Consensus 252 ~~dG~l-~V~~---~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 252 MDDGSV-VLAS---KDYRLYIYRYVQL 274 (279)
T ss_dssp ETTTEE-EEEE---TTTEEEEEECSCC
T ss_pred eCCCcE-EEEe---CCCeEEEEEeeee
Confidence 999974 5554 4899999998754
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.35 E-value=2.1e-09 Score=85.36 Aligned_cols=234 Identities=8% Similarity=0.078 Sum_probs=146.2
Q ss_pred eeeeecccCCcEEEEEcC-------CCcEEEEECCCCCCCceeEEec----ccccceeEEEEEecCCCEEEEEecCCcEE
Q psy6213 55 NDVAWSCIEENHIATGAT-------NGAVVVWNLGQISRSKQERVFN----DHKRTVNKVSFHYVESNWLISGSQDGTMR 123 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~l~~~~~d~~i~ 123 (330)
..++|.| +++++++... +|+|..||..+ ........ .....-..+.|.+ +++.++++...+.+.
T Consensus 21 EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~---~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~ 95 (314)
T d1pjxa_ 21 EGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKT---GKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLL 95 (314)
T ss_dssp EEEEECT-TSCEEEEETTCEETTEECCEEEEECTTT---CCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEE
T ss_pred eEeEEeC-CCCEEEEECccccccccCCEEEEEECCC---CcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEE
Confidence 6788998 8887776433 46688888776 22222211 1123456899998 778777777777788
Q ss_pred EEEeecCceeeeeecCC----CCeEEEEEcCCCCcEEEEEec---------------CCcEEEEecCCCccceeeeccCC
Q psy6213 124 LFDIRCQESTKIFHSNT----ESVRDVEFNPHSPYAFASVSE---------------NGTIQQWDVRRPEKCFYQFTAHS 184 (330)
Q Consensus 124 i~d~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~ 184 (330)
.+|.+............ .....+++.++|. +.++-.. .|.|+.++.. ++... +....
T Consensus 96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~~~~-~~~~~ 171 (314)
T d1pjxa_ 96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQMIQ-VDTAF 171 (314)
T ss_dssp EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCEEE-EEEEE
T ss_pred EEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeec--CceeE-eeCCc
Confidence 88876543222111111 1357799999997 5555321 2344444433 22222 22233
Q ss_pred CCeEEEEEcCCCC-----EEEEEecCCcEEEEeCCCCccccc-----ee--ccccceEEEEEcCCCCeEEEEeecccCCe
Q psy6213 185 GPIFACDWHPEHA-----WLATASRDKTIKVWDLSIKPSLEY-----SI--NTIASVSRIKWRPQRKFHLASCSLVVDSS 252 (330)
Q Consensus 185 ~~i~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~-----~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 252 (330)
...+.++|+|++. ++++-+..+.|..||+.....+.. .. ........+++.++|+.+++.. ..+.
T Consensus 172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~---~~g~ 248 (314)
T d1pjxa_ 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW---GSSH 248 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE---TTTE
T ss_pred ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc---CCCE
Confidence 4457899998764 455556788899998764422211 11 1123467899999999644444 4899
Q ss_pred EEEEEccCCCccceEeecCCCCeEEEEEecCCC-EEEEeecCCeEeeeec
Q psy6213 253 VNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ-LFIASSRVSIIPRAKN 301 (330)
Q Consensus 253 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~iw~~ 301 (330)
|.+||.+.+.. ...+.......++++|.||++ +.++.+.+|.|...+.
T Consensus 249 I~~~dp~~g~~-~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 249 IEVFGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEEEeCCCCEE-EEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence 99999887654 555666567789999999987 4566667788877653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.25 E-value=2.7e-08 Score=79.05 Aligned_cols=227 Identities=10% Similarity=0.061 Sum_probs=144.0
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec----CCcEEEEEeec
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ----DGTMRLFDIRC 129 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d~~i~i~d~~~ 129 (330)
...++|.+ ++++.++-..++.|..|+.+. ................+++.+ +++++++... .+.+...+...
T Consensus 42 lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g---~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 42 LEGLNFDR-QGQLFLLDVFEGNIFKINPET---KEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp EEEEEECT-TSCEEEEETTTCEEEEECTTT---CCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTS
T ss_pred cEeCEECC-CCCEEEEECCCCEEEEEECCC---CeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCC
Confidence 46789998 888888877889898888776 344444444556788999998 7887776543 23355555444
Q ss_pred Cceeeeeec--CCCCeEEEEEcCCCCcEEEEEec------CCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEE-E
Q psy6213 130 QESTKIFHS--NTESVRDVEFNPHSPYAFASVSE------NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWL-A 200 (330)
Q Consensus 130 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~ 200 (330)
......... .......+++.++|. +.++... .+.+..++... ..+..+...-...+.++|+|+++.| +
T Consensus 117 ~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~~~~~~~~pnGia~s~dg~~lyv 193 (319)
T d2dg1a1 117 DNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQNISVANGIALSTDEKVLWV 193 (319)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS--CCEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred ceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc--ceeEEEeeccceeeeeeeccccceEEE
Confidence 443333321 223577899999997 4554322 12355555442 2333333333456789999999865 4
Q ss_pred EEecCCcEEEEeCCCCccccc--------eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEee---
Q psy6213 201 TASRDKTIKVWDLSIKPSLEY--------SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFT--- 269 (330)
Q Consensus 201 ~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~--- 269 (330)
+-+..+.|..||+........ ..........+++.++|+..++. . ..+.|.+||. .++. +..+.
T Consensus 194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~-~--~~g~V~~~~p-~G~~-l~~i~~P~ 268 (319)
T d2dg1a1 194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM-Y--GQGRVLVFNK-RGYP-IGQILIPG 268 (319)
T ss_dssp EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE-E--TTTEEEEECT-TSCE-EEEEECTT
T ss_pred ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEE-c--CCCEEEEECC-CCcE-EEEEeCCC
Confidence 555678999999864422111 11112346789999999854444 4 4899999996 4544 44443
Q ss_pred ---cCCCCeEEEEEecCCCEEEEeecC
Q psy6213 270 ---EHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 270 ---~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
++...+++++|.|++..+++.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 269 RDEGHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp GGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred cCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence 223457899999988777776543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.1e-09 Score=90.14 Aligned_cols=271 Identities=6% Similarity=-0.016 Sum_probs=153.9
Q ss_pred EEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc---------CCCcEEEE
Q psy6213 10 HGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA---------TNGAVVVW 79 (330)
Q Consensus 10 ~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------~dg~i~iw 79 (330)
..|.+++.++... +|.|.+||+.+++....+...... ...+....||| ++++++.+. ..+.+.++
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~ 96 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIE----SLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLS 96 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTT----TTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCcccc----ccccceeEECC-CCCeEEEEEcccceeEeeccccEEEE
Confidence 4688888886666 999999999987654333322211 12346778999 888877763 35678899
Q ss_pred ECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCC-CC----------------
Q psy6213 80 NLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNT-ES---------------- 142 (330)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~---------------- 142 (330)
|+.+.. ...+.........+....|+| +++.+|-.. ++.|.+.+..+++.++...... ..
T Consensus 97 d~~~~~-~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~ 173 (465)
T d1xfda1 97 KIPHGD-PQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (465)
T ss_dssp ESSSCC-CEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred EccCCc-eeeccCccCCccccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcc
Confidence 998721 222222223345567789999 777777665 5689888887766554433211 11
Q ss_pred -eEEEEEcCCCCcEEEEEecCCcEEEEe---------------------------------cCCCccceeee-----ccC
Q psy6213 143 -VRDVEFNPHSPYAFASVSENGTIQQWD---------------------------------VRRPEKCFYQF-----TAH 183 (330)
Q Consensus 143 -v~~~~~~~~~~~~~~~~~~dg~i~i~d---------------------------------~~~~~~~~~~~-----~~~ 183 (330)
-..+.|||+|+++++.-..+..+..+. +..+....... ...
T Consensus 174 ~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~ 253 (465)
T d1xfda1 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (465)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred ccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccc
Confidence 246789999997555444444444443 32211111111 011
Q ss_pred CCCeEEEEEcCCCCEEEEEecC----CcEEEEeCCCCccccceec-cccc----eEEEEEcCCCCeEEEE-eecccC--C
Q psy6213 184 SGPIFACDWHPEHAWLATASRD----KTIKVWDLSIKPSLEYSIN-TIAS----VSRIKWRPQRKFHLAS-CSLVVD--S 251 (330)
Q Consensus 184 ~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~-~~~~----v~~~~~~~~~~~l~~~-~~~~~~--~ 251 (330)
..-+..+.|+|++++++..... ..+.++|..+++....... .... -....|+|+|+.++.. .++ .+ +
T Consensus 254 ~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se-~~g~~ 332 (465)
T d1xfda1 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP-QGGRG 332 (465)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC-CSSSS
T ss_pred cceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeee-ecccC
Confidence 1236778999998866654432 2488889888854332221 1221 2346799999864332 111 23 3
Q ss_pred eEEEEEccCC-----CccceEeecCCCCeEEE-EEecCCCEEEE
Q psy6213 252 SVNVWDIRRP-----YIPLASFTEHKDVVSGL-AWRGDPQLFIA 289 (330)
Q Consensus 252 ~i~i~d~~~~-----~~~~~~~~~~~~~v~~~-~~~~~~~~l~s 289 (330)
.++..++... ......+....-.|..+ .|+++++.|..
T Consensus 333 ~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF 376 (465)
T d1xfda1 333 KFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYF 376 (465)
T ss_dssp CEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred ceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEE
Confidence 4554443211 11123333334456665 68887776654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.18 E-value=8.2e-09 Score=83.75 Aligned_cols=222 Identities=10% Similarity=0.037 Sum_probs=132.7
Q ss_pred EEEEEcC--CCcEEEEECCCCCCCce--eEEe-cccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee--ec
Q psy6213 66 HIATGAT--NGAVVVWNLGQISRSKQ--ERVF-NDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF--HS 138 (330)
Q Consensus 66 ~l~~~~~--dg~i~iw~~~~~~~~~~--~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~ 138 (330)
.|++|+. .+.|..+.++... .+. +... ......+..++++| ++++|.++.. +.+..|.+.....+... ..
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~-~~l~~~~~~~~~~~~~~s~la~s~-d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~ 80 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEK-LTCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAM-KKWSSFAVKSPTEIVHEASHP 80 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTT-TEEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEB-TEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeecCCCCEEEEEEcCCC-CeEEEeeeeeccCCCCCCEEEEcC-CCCEEEEEeC-CcEEEEEEeCCCCeEEEeeec
Confidence 3566643 5567776665421 222 1121 22345567899998 8888877764 57888887753322222 12
Q ss_pred CCCCeEEEEEcCCCCcEEEEEe--cCCcEEEEecCCCccce---------------e-eeccCCCCeEEEEEcCCCCEEE
Q psy6213 139 NTESVRDVEFNPHSPYAFASVS--ENGTIQQWDVRRPEKCF---------------Y-QFTAHSGPIFACDWHPEHAWLA 200 (330)
Q Consensus 139 ~~~~v~~~~~~~~~~~~~~~~~--~dg~i~i~d~~~~~~~~---------------~-~~~~~~~~i~~~~~~~~~~~l~ 200 (330)
.......++++++++.++++.. ..+.+..+.+....... . ........+.++.|+|+|++++
T Consensus 81 ~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~ 160 (365)
T d1jofa_ 81 IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEE
Confidence 2334567788888875444432 24555554433211100 0 0111223478999999999888
Q ss_pred EEec-CCcEEEEeCCCCcccc-----ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCcc-ceEee----
Q psy6213 201 TASR-DKTIKVWDLSIKPSLE-----YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIP-LASFT---- 269 (330)
Q Consensus 201 ~~~~-dg~i~i~d~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~-~~~~~---- 269 (330)
++.. ...|.+|+........ ...........++|+|+++++.++.. .++.|.+|++...... .....
T Consensus 161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e--~~~~V~v~~~~~~~~~~~~~~~~~~~ 238 (365)
T d1jofa_ 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred EeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc--CCCEEEEEEecCCCceEEEEeeeecc
Confidence 7764 4578888765432221 11123467899999999998878877 7999999999765431 11111
Q ss_pred -------------cCCCCeEEEEEecCCCEEEEeec
Q psy6213 270 -------------EHKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 270 -------------~~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
.+......+.++|||++|+++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr 274 (365)
T d1jofa_ 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred ccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence 11123567899999999988743
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=2.6e-08 Score=83.34 Aligned_cols=275 Identities=7% Similarity=0.011 Sum_probs=148.6
Q ss_pred cceEEEEeeCCCeeec----------C-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCC
Q psy6213 6 PVHKHGLKADNGLAQP----------S-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNG 74 (330)
Q Consensus 6 ~v~~~~~s~~~~~~~~----------g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 74 (330)
.+....||||++++.. + .+.+.++|+.++............ ..+....||| +++.+|-.. ++
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~-----~~l~~~~wSP-DG~~iafv~-~~ 134 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN-----AKLQYAGWGP-KGQQLIFIF-EN 134 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS-----CCCSBCCBCS-STTCEEEEE-TT
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc-----cccceeeecc-CCceEEEEe-cc
Confidence 4667789999999332 2 468899999988755432221111 1135688999 999888775 56
Q ss_pred cEEEEECCCCCCCceeEEe-cccccc-----------------eeEEEEEecCCCEEEEEecC-Cc--------------
Q psy6213 75 AVVVWNLGQISRSKQERVF-NDHKRT-----------------VNKVSFHYVESNWLISGSQD-GT-------------- 121 (330)
Q Consensus 75 ~i~iw~~~~~~~~~~~~~~-~~~~~~-----------------i~~i~~~~~~~~~l~~~~~d-~~-------------- 121 (330)
.|.+.+... ....+.. .+.... -..+-||| +++.||....| ..
T Consensus 135 nl~~~~~~~---~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~ 210 (465)
T d1xfda1 135 NIYYCAHVG---KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIY 210 (465)
T ss_dssp EEEEESSSS---SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred eEEEEecCC---CceEEEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeeccccccccc
Confidence 788887765 2222222 111111 24677999 88888876432 22
Q ss_pred -------------------EEEEEeecCceeeeee------cCCCCeEEEEEcCCCCcEEEEEecCC---cEEEEecCCC
Q psy6213 122 -------------------MRLFDIRCQESTKIFH------SNTESVRDVEFNPHSPYAFASVSENG---TIQQWDVRRP 173 (330)
Q Consensus 122 -------------------i~i~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~dg---~i~i~d~~~~ 173 (330)
+.++|+.++....... ....-+..+.|+|+++.++.....+. .+.++|..++
T Consensus 211 p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg 290 (465)
T d1xfda1 211 PTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG 290 (465)
T ss_dssp CCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred ceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCC
Confidence 3344443332211111 11123677899999873333333332 4778888874
Q ss_pred ccceeeecc-CCCCe----EEEEEcCCCCEEE---EEecCC--cEEEEeCCC------CccccceeccccceEEE-EEcC
Q psy6213 174 EKCFYQFTA-HSGPI----FACDWHPEHAWLA---TASRDK--TIKVWDLSI------KPSLEYSINTIASVSRI-KWRP 236 (330)
Q Consensus 174 ~~~~~~~~~-~~~~i----~~~~~~~~~~~l~---~~~~dg--~i~i~d~~~------~~~~~~~~~~~~~v~~~-~~~~ 236 (330)
+....... ..+.| ....|+|+|+.++ ....+| .+..+++.. +..........-.|..+ .|++
T Consensus 291 -~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~ 369 (465)
T d1xfda1 291 -VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE 369 (465)
T ss_dssp -CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred -cEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcC
Confidence 33333222 22222 3467899987433 222333 344443321 11222223334445554 6899
Q ss_pred CCCeEEEEeecccCCeEEEE--EccCCCc--cceEeecCCCCeEEEEEecCCCEEEEeec
Q psy6213 237 QRKFHLASCSLVVDSSVNVW--DIRRPYI--PLASFTEHKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 237 ~~~~l~~~~~~~~~~~i~i~--d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
+++.++.++.+..-+.-++| ++..... ++...........++.|+|++++++....
T Consensus 370 ~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s 429 (465)
T d1xfda1 370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (465)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred CCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence 98887766652112233444 4443322 11111123446779999999999885544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.14 E-value=8.6e-08 Score=76.07 Aligned_cols=200 Identities=10% Similarity=0.078 Sum_probs=131.9
Q ss_pred cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEec----CCcEEEEecCCC
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSE----NGTIQQWDVRRP 173 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~~ 173 (330)
..+..++|.+ ++++.++-...+.|+.|+..+++....+.........++++++|. ++++... .+.+...+...
T Consensus 40 ~~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~- 116 (319)
T d2dg1a1 40 LQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENG- 116 (319)
T ss_dssp CCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTS-
T ss_pred cCcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCC-
Confidence 3456899997 788888877889999999887766655555566788999999997 5655432 23344555443
Q ss_pred ccceeeecc--CCCCeEEEEEcCCCCEEEEEec------CCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEe
Q psy6213 174 EKCFYQFTA--HSGPIFACDWHPEHAWLATASR------DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASC 245 (330)
Q Consensus 174 ~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 245 (330)
......... -....+.+++.++|++.++... .+.+..++.... ............+.++|+|+++.|+++-
T Consensus 117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad 195 (319)
T d2dg1a1 117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTE 195 (319)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEec
Confidence 222222211 1235778999999987665432 123555554433 2222233344567899999999877777
Q ss_pred ecccCCeEEEEEccCCCccceEe-------ecCCCCeEEEEEecCCCEEEEeecCCeEeeeeccc
Q psy6213 246 SLVVDSSVNVWDIRRPYIPLASF-------TEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNIK 303 (330)
Q Consensus 246 ~~~~~~~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 303 (330)
+ ..+.|+.|++.......... .........|++.++|++.++....+.|.+++...
T Consensus 196 ~--~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G 258 (319)
T d2dg1a1 196 T--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG 258 (319)
T ss_dssp G--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred c--cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCC
Confidence 6 68999999987543211111 11123467899999999888888899999998654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.03 E-value=1.1e-06 Score=68.75 Aligned_cols=220 Identities=9% Similarity=0.079 Sum_probs=140.5
Q ss_pred EEEEeeC-CCeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCC
Q psy6213 9 KHGLKAD-NGLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQIS 85 (330)
Q Consensus 9 ~~~~s~~-~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 85 (330)
+..|.+. +.+.-+. .+.|..||.++++.. .+. ....+.++++.+ ++.++++ +.+ .+..+|..+
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~--------~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~t-- 87 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHA--------LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTAT-- 87 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE--------CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTT--
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE--------CCCCcEEEEEec-CCCEEEE-EeC-ccEEeeccc--
Confidence 3456653 4444344 788888888876532 222 122357888887 7766665 444 588999887
Q ss_pred CCceeEEec--c--cccceeEEEEEecCCCEEEEEec----CCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEE
Q psy6213 86 RSKQERVFN--D--HKRTVNKVSFHYVESNWLISGSQ----DGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFA 157 (330)
Q Consensus 86 ~~~~~~~~~--~--~~~~i~~i~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 157 (330)
.+...... . ....++.+.+.| ++++.++... .+.-.+|.+..++...... .-.....++|+++++.+++
T Consensus 88 -g~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~ 164 (295)
T d2ghsa1 88 -GVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYF 164 (295)
T ss_dssp -CCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEE
T ss_pred -ceeeEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEE
Confidence 33222211 1 123578888887 7776665433 2345677777776554443 3345678999999997777
Q ss_pred EEecCCcEEEEecCCCcc-------ceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceE
Q psy6213 158 SVSENGTIQQWDVRRPEK-------CFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVS 230 (330)
Q Consensus 158 ~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 230 (330)
+-+..+.|..|++..... .........+....+++..+|++.++.-..+.|..||.. ++......-....++
T Consensus 165 ~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP~~~~T 243 (295)
T d2ghsa1 165 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTT 243 (295)
T ss_dssp EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEE
T ss_pred eecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCCCCceE
Confidence 878889999998753211 111222344567889999999987777778899999965 434333333345689
Q ss_pred EEEEc-CCCCeEEEEee
Q psy6213 231 RIKWR-PQRKFHLASCS 246 (330)
Q Consensus 231 ~~~~~-~~~~~l~~~~~ 246 (330)
+++|- |+.+.|++++.
T Consensus 244 ~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 244 CPAFIGPDASRLLVTSA 260 (295)
T ss_dssp EEEEESTTSCEEEEEEB
T ss_pred EEEEeCCCCCEEEEEEC
Confidence 99995 77777777654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.87 E-value=7.3e-06 Score=63.84 Aligned_cols=220 Identities=12% Similarity=0.065 Sum_probs=139.3
Q ss_pred eeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceee
Q psy6213 55 NDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTK 134 (330)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 134 (330)
....|.+.++.+..+--..+.|.-||.++ .+. ..+. ....+.++++.+ ++.++++ +.+ .+..+|..+++...
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~---g~~-~~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~ 92 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLAS---GRK-TVHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTL 92 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTT---TEE-EEEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCC---CeE-EEEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeE
Confidence 34568874556666655678899999877 322 2222 345678888886 6666554 444 58999998887544
Q ss_pred eeec----CCCCeEEEEEcCCCCcEEEEEec----CCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEE-EEecC
Q psy6213 135 IFHS----NTESVRDVEFNPHSPYAFASVSE----NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLA-TASRD 205 (330)
Q Consensus 135 ~~~~----~~~~v~~~~~~~~~~~~~~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d 205 (330)
.... ....+..+.+.|+|. +.++... .+.-.+|.+.. ++...... .-...+.++|+++++.++ +-+..
T Consensus 93 l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~-g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~ 169 (295)
T d2ghsa1 93 HAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAK-GKVTKLFA-DISIPNSICFSPDGTTGYFVDTKV 169 (295)
T ss_dssp EECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEET-TEEEEEEE-EESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecC-CcEEEEee-ccCCcceeeecCCCceEEEeeccc
Confidence 3321 123578899999998 3444322 23345666554 33333332 334567899999998654 55567
Q ss_pred CcEEEEeCCCCcc-----ccc---eeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEE
Q psy6213 206 KTIKVWDLSIKPS-----LEY---SINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSG 277 (330)
Q Consensus 206 g~i~i~d~~~~~~-----~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~ 277 (330)
+.|..|++..... ... ..........+++..+|...++.-. .+.|..||.. ++. +..+......+++
T Consensus 170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~---~g~V~~~dp~-G~~-~~~i~lP~~~~T~ 244 (295)
T d2ghsa1 170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG---EGAVDRYDTD-GNH-IARYEVPGKQTTC 244 (295)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET---TTEEEEECTT-CCE-EEEEECSCSBEEE
T ss_pred ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC---CCceEEecCC-CcE-eeEecCCCCceEE
Confidence 8899888753211 111 1123456788999999986554443 8899999964 544 6666655567999
Q ss_pred EEEe-cCCCEEEEe
Q psy6213 278 LAWR-GDPQLFIAS 290 (330)
Q Consensus 278 ~~~~-~~~~~l~s~ 290 (330)
++|- ||.+.|+..
T Consensus 245 ~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 245 PAFIGPDASRLLVT 258 (295)
T ss_dssp EEEESTTSCEEEEE
T ss_pred EEEeCCCCCEEEEE
Confidence 9996 566655543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=9.4e-06 Score=61.92 Aligned_cols=219 Identities=8% Similarity=0.033 Sum_probs=133.4
Q ss_pred eeeeeecccCCcEEEE-EcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCce
Q psy6213 54 CNDVAWSCIEENHIAT-GATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQES 132 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 132 (330)
+.+++|.+ .++.++. -..++.|...+++. ......+......+.++++....+++..+-...+.|.+.+++....
T Consensus 38 ~~~ld~D~-~~~~iywsd~~~~~I~~~~l~g---~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 38 IIGLAFDC-VDKVVYWTDISEPSIGRASLHG---GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (263)
T ss_dssp EEEEEEET-TTTEEEEEETTTTEEEEEESSS---CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEEEEEEe-CCCEEEEEECCCCeEEEEEccc---CCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence 46788988 5555554 45667788888875 2333333333356788898864555555666678999999875544
Q ss_pred eeeeecCCCCeEEEEEcCCCCcEEEEEecCCc--EEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEE-ecCCcEE
Q psy6213 133 TKIFHSNTESVRDVEFNPHSPYAFASVSENGT--IQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATA-SRDKTIK 209 (330)
Q Consensus 133 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~ 209 (330)
...+......+..++++|...+++.+-...+. |..-++.... ........-.....+++.+.++.|..+ ...+.|.
T Consensus 114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~ 192 (263)
T d1npea_ 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (263)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence 33333334678999999988865555433333 4444554322 222222233567899999877766554 5677899
Q ss_pred EEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEe-ecCCCCeEEEEEecC
Q psy6213 210 VWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASF-TEHKDVVSGLAWRGD 283 (330)
Q Consensus 210 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~ 283 (330)
..|+......... ........+++. +.+++.+.. ..+.|...|..+++. ...+ ........+++..++
T Consensus 193 ~~~~~g~~~~~v~-~~~~~P~~lav~--~~~lYwtd~--~~~~I~~~~~~~g~~-~~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 193 CLNPAQPGRRKVL-EGLQYPFAVTSY--GKNLYYTDW--KTNSVIAMDLAISKE-MDTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp EEETTEEEEEEEE-ECCCSEEEEEEE--TTEEEEEET--TTTEEEEEETTTTEE-EEEECCSSCCCCCCEEEECS
T ss_pred EEECCCCCeEEEE-CCCCCcEEEEEE--CCEEEEEEC--CCCEEEEEECCCCcc-ceEECCCCCCCcceEEEeCC
Confidence 9998765332222 222334577775 445666665 578899999887765 3333 233345556665543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.69 E-value=7.6e-07 Score=68.82 Aligned_cols=228 Identities=9% Similarity=0.011 Sum_probs=118.2
Q ss_pred eeecccC--CcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEec-CC-----cEEEEEee
Q psy6213 57 VAWSCIE--ENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQ-DG-----TMRLFDIR 128 (330)
Q Consensus 57 ~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-d~-----~i~i~d~~ 128 (330)
+..+| + |+.++..+ +|.|.+.|+.. ++. ..+..+.+.+...+|+| +++.|+.... ++ .|.+++..
T Consensus 4 ~~~sP-di~G~~v~f~~-~~dl~~~d~~~---g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~ 76 (281)
T d1k32a2 4 LLLNP-DIHGDRIIFVC-CDDLWEHDLKS---GST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGE 76 (281)
T ss_dssp CCEEE-EEETTEEEEEE-TTEEEEEETTT---CCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred cccCC-CCCCCEEEEEe-CCcEEEEECCC---CCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEec
Confidence 34567 6 78877664 46788889886 333 44556677889999999 8887775432 22 47777777
Q ss_pred cCceeeeeec------CCCCeEEEEEcCCCCcEEEEEecC-----CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCC
Q psy6213 129 CQESTKIFHS------NTESVRDVEFNPHSPYAFASVSEN-----GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHA 197 (330)
Q Consensus 129 ~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 197 (330)
+++....... .........|+|+++.++++...+ ..+...+... .. .... +........+.+.+.
T Consensus 77 ~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~--~~~~~~~~~~~~~~~ 152 (281)
T d1k32a2 77 NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDG-IN-FVPL--NLGPATHILFADGRR 152 (281)
T ss_dssp TTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGG-TE-EEEC--CSCSCSEEEEETTEE
T ss_pred CCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCC-ce-eEEe--cCCccceeeecCCCe
Confidence 6665433211 123456788999999543332221 1234444433 11 1111 222223333333333
Q ss_pred EEEEEecCCc-----------EEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccce
Q psy6213 198 WLATASRDKT-----------IKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA 266 (330)
Q Consensus 198 ~l~~~~~dg~-----------i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~ 266 (330)
.++....+.. ......... ................++++. ++..........|.++|+.+... .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~~--~ 227 (281)
T d1k32a2 153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSG-AFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKDL--R 227 (281)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEETT-EEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSCSC--E
T ss_pred EEEeeccccceeeeeccCCcceeeeecccc-ceeeccCCccccceeeeeccc--cceecccccccceEEEeCCCCce--E
Confidence 3333222111 111111111 111222223344455566653 33333322355788888877653 3
Q ss_pred EeecCCCCeEEEEEecCCCEEEEeecCCeEeeeecc
Q psy6213 267 SFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~~~ 302 (330)
.+..+. ......|+|||+.|+. ..++.|++++..
T Consensus 228 ~lt~~~-~~~~~~~SpDG~~I~f-~~~~~l~~~d~~ 261 (281)
T d1k32a2 228 KHTSFT-DYYPRHLNTDGRRILF-SKGGSIYIFNPD 261 (281)
T ss_dssp ECCCCC-SSCEEEEEESSSCEEE-EETTEEEEECTT
T ss_pred EeecCC-CcccccCcCCCCEEEE-EeCCEEEEEECC
Confidence 333222 2233468999999886 456788877643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.64 E-value=6.3e-06 Score=63.44 Aligned_cols=228 Identities=12% Similarity=0.008 Sum_probs=118.7
Q ss_pred EEEeeC--CCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcC-CC-----cEEEEE
Q psy6213 10 HGLKAD--NGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGAT-NG-----AVVVWN 80 (330)
Q Consensus 10 ~~~s~~--~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg-----~i~iw~ 80 (330)
+..+|| |+.++-. ++.|.+.|+.+++..+... ..+ .....+||| +++.||.... ++ .|.+++
T Consensus 4 ~~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~-~~~-------~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~ 74 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVS-NLG-------VINNARFFP-DGRKIAIRVMRGSSLNTADLYFYN 74 (281)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTCCEEEEEC-SSS-------EEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEE
T ss_pred cccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEec-CCC-------cccCEEECC-CCCEEEEEEeeCCCCCceEEEEEE
Confidence 356899 9995555 8889888999887654322 111 247789999 9998886532 21 366666
Q ss_pred CCCCCCCceeEEec------ccccceeEEEEEecCCCEEEEEecC------CcEEEEEeecCceeeeeecCCCCeEEEEE
Q psy6213 81 LGQISRSKQERVFN------DHKRTVNKVSFHYVESNWLISGSQD------GTMRLFDIRCQESTKIFHSNTESVRDVEF 148 (330)
Q Consensus 81 ~~~~~~~~~~~~~~------~~~~~i~~i~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 148 (330)
... +....... ..........|+| +++.++..... ..+...+...+..... ........ +
T Consensus 75 ~~~---g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~ 146 (281)
T d1k32a2 75 GEN---GEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHI-L 146 (281)
T ss_dssp TTT---TEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEE-E
T ss_pred ecC---CceEEeeecCCCccCccccccccccCC-CCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCcccee-e
Confidence 655 22222111 1223456788998 78877765332 2344455444433221 12222223 3
Q ss_pred cCCCCcEEEEEecCC-----------cEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC--CcEEEEeCCC
Q psy6213 149 NPHSPYAFASVSENG-----------TIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD--KTIKVWDLSI 215 (330)
Q Consensus 149 ~~~~~~~~~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~ 215 (330)
.+++...++...... ......... .. ...............++++. .+.....+ ..|.++|+.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g 223 (281)
T d1k32a2 147 FADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GA-FKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDG 223 (281)
T ss_dssp EETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TE-EEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTS
T ss_pred ecCCCeEEEeeccccceeeeeccCCcceeeeeccc-cc-eeeccCCccccceeeeeccc-cceecccccccceEEEeCCC
Confidence 344432333322211 111111111 11 11122233344455555543 23333333 3477788877
Q ss_pred CccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc
Q psy6213 216 KPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 216 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~ 263 (330)
............. ...|+|||+.|+... ++.|+++|+.+++.
T Consensus 224 ~~~~~lt~~~~~~--~~~~SpDG~~I~f~~----~~~l~~~d~~~g~~ 265 (281)
T d1k32a2 224 KDLRKHTSFTDYY--PRHLNTDGRRILFSK----GGSIYIFNPDTEKI 265 (281)
T ss_dssp CSCEECCCCCSSC--EEEEEESSSCEEEEE----TTEEEEECTTTCCE
T ss_pred CceEEeecCCCcc--cccCcCCCCEEEEEe----CCEEEEEECCCCCE
Confidence 6433222222222 346899999866543 78999999988763
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=6.3e-05 Score=57.33 Aligned_cols=232 Identities=11% Similarity=0.063 Sum_probs=138.1
Q ss_pred CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEE-cCCCcEEEEECCCCCCCce-eEEecccccce
Q psy6213 23 RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATG-ATNGAVVVWNLGQISRSKQ-ERVFNDHKRTV 100 (330)
Q Consensus 23 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~i 100 (330)
...|+-.++++.+...... + ...+.+++|.+ ..+.|+-. ...+.|.-.++........ ...+......+
T Consensus 9 ~~~I~~~~l~~~~~~~~~~---~-----~~~~~~id~d~-~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p 79 (266)
T d1ijqa1 9 RHEVRKMTLDRSEYTSLIP---N-----LRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (266)
T ss_dssp BSSEEEEETTSCCCEEEEC---S-----CSSEEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred CCeEEEEECCCCcceeeeC---C-----CCceEEEEEEe-CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence 4458888887755433321 1 11247889988 55555544 4566677666654211112 22223333556
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEe-cCCcEEEEecCCCccceee
Q psy6213 101 NKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVS-ENGTIQQWDVRRPEKCFYQ 179 (330)
Q Consensus 101 ~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~dg~i~i~d~~~~~~~~~~ 179 (330)
..+++.+..+++..+-...+.|.+.++........+.........++++|...+++.+-. ..+.|...++.. .....
T Consensus 80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG--s~~~~ 157 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG--VDIYS 157 (266)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS--CCEEE
T ss_pred ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCC--Cceec
Confidence 788887756666666667789999999866655555555567899999998775555532 334576677654 22233
Q ss_pred e-ccCCCCeEEEEEcCCCCEEEEE-ecCCcEEEEeCCCCccccceec--cccceEEEEEcCCCCeEEEEeecccCCeEEE
Q psy6213 180 F-TAHSGPIFACDWHPEHAWLATA-SRDKTIKVWDLSIKPSLEYSIN--TIASVSRIKWRPQRKFHLASCSLVVDSSVNV 255 (330)
Q Consensus 180 ~-~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i 255 (330)
+ ...-.....+++.+.++.|..+ ...+.|...|+........... .......+++.. .+++.+.. .++.|..
T Consensus 158 l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~--~~ly~td~--~~~~I~~ 233 (266)
T d1ijqa1 158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDI--INEAIFS 233 (266)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEET--TTTEEEE
T ss_pred ccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC--CEEEEEEC--CCCeEEE
Confidence 2 2334567899999877665555 5668899999876533222211 223456677663 44666655 5788888
Q ss_pred EEccCCCccceEeec
Q psy6213 256 WDIRRPYIPLASFTE 270 (330)
Q Consensus 256 ~d~~~~~~~~~~~~~ 270 (330)
.+..++.. ...+..
T Consensus 234 ~~~~~g~~-~~~~~~ 247 (266)
T d1ijqa1 234 ANRLTGSD-VNLLAE 247 (266)
T ss_dssp EETTTCCC-CEEEEC
T ss_pred EECCCCcc-eEEEEc
Confidence 88777654 444443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.49 E-value=9.9e-05 Score=56.07 Aligned_cols=228 Identities=8% Similarity=0.000 Sum_probs=138.2
Q ss_pred EEEEEcCCCcEEEEECCCCCC--CceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCe
Q psy6213 66 HIATGATNGAVVVWNLGQISR--SKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESV 143 (330)
Q Consensus 66 ~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v 143 (330)
+|+.+.. +.|+-.+++.... ......+..+...+..++|.+.++.++.+-..++.|+..+++.......+......+
T Consensus 3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p 81 (263)
T d1npea_ 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (263)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence 4444432 4676667654221 112223344455688899997444444454567889998887665555554444678
Q ss_pred EEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecC-Cc--EEEEeCCCCcccc
Q psy6213 144 RDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRD-KT--IKVWDLSIKPSLE 220 (330)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~ 220 (330)
..+++..-+..+..+-...+.|.+.++.... ...........+..++++|...++...... +. |.--++.......
T Consensus 82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~ 160 (263)
T d1npea_ 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred cEEEEeccCCeEEEeccCCCEEEEEecCCce-EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee
Confidence 8999988777666666677899999988532 222233334678899999977666654332 23 4444555443332
Q ss_pred ceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEe-ecCCeEeee
Q psy6213 221 YSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIAS-SRVSIIPRA 299 (330)
Q Consensus 221 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~iw 299 (330)
...........+++.+.++.|+.+.. ..+.|...++..... .....+.. ...++++. +..|... ...+.|...
T Consensus 161 i~~~~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~~g~~~-~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~ 234 (263)
T d1npea_ 161 LAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGR-RKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAM 234 (263)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEE-EEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred eeeecccccceEEEeecCcEEEEEeC--CCCEEEEEECCCCCe-EEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEE
Confidence 22233456789999988887777765 588999999976543 22333322 34678775 3445444 345666555
Q ss_pred ec
Q psy6213 300 KN 301 (330)
Q Consensus 300 ~~ 301 (330)
+.
T Consensus 235 ~~ 236 (263)
T d1npea_ 235 DL 236 (263)
T ss_dssp ET
T ss_pred EC
Confidence 43
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=0.00019 Score=54.58 Aligned_cols=223 Identities=13% Similarity=0.018 Sum_probs=134.1
Q ss_pred EEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEE-EEecCCcEEEEEeecCc----eeeeeecCCC
Q psy6213 67 IATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLI-SGSQDGTMRLFDIRCQE----STKIFHSNTE 141 (330)
Q Consensus 67 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~-~~~~d~~i~i~d~~~~~----~~~~~~~~~~ 141 (330)
|+.+.. ..|+-.++++ ....... .....+..+.|.+ ..+.+. +-...+.|+-.+++... ....+.....
T Consensus 4 Ll~s~~-~~I~~~~l~~---~~~~~~~-~~~~~~~~id~d~-~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 77 (266)
T d1ijqa1 4 LFFTNR-HEVRKMTLDR---SEYTSLI-PNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 77 (266)
T ss_dssp EEEECB-SSEEEEETTS---CCCEEEE-CSCSSEEEEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred EEEECC-CeEEEEECCC---Ccceeee-CCCCceEEEEEEe-CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 444443 3588889876 2222223 3445677899997 455444 44456667766665321 1222222335
Q ss_pred CeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEe--cCCcEEEEeCCCCccc
Q psy6213 142 SVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATAS--RDKTIKVWDLSIKPSL 219 (330)
Q Consensus 142 ~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~ 219 (330)
.+..+++.+.+..+..+-...+.|.+.++... ...............++++|...+|.... ..+.|.-.++......
T Consensus 78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~-~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~ 156 (266)
T d1ijqa1 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 156 (266)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CcceEEEeeccceEEEEecCCCEEEeEecCCc-eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence 57789998888777777677788999998863 33333444456788999998655555443 3345766776654333
Q ss_pred cceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec--CCCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 220 EYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE--HKDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 220 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
............+++.+.+..|..+-. ..+.|...++..... ...... ......++++. ++.+..+-..++.|.
T Consensus 157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~--~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~ 232 (266)
T d1ijqa1 157 SLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (266)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred cccccccceeeEEEeeccccEEEEecC--CcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEE
Confidence 222233456789999998888777766 688999999976543 222222 22346678876 334444444566666
Q ss_pred eee
Q psy6213 298 RAK 300 (330)
Q Consensus 298 iw~ 300 (330)
..+
T Consensus 233 ~~~ 235 (266)
T d1ijqa1 233 SAN 235 (266)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.35 E-value=5.7e-05 Score=60.24 Aligned_cols=189 Identities=11% Similarity=0.079 Sum_probs=115.3
Q ss_pred eCCCe-eecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeee--cccCCcEEEEEcCC---------------
Q psy6213 14 ADNGL-AQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAW--SCIEENHIATGATN--------------- 73 (330)
Q Consensus 14 ~~~~~-~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~d--------------- 73 (330)
+||++ ++.. ++.|.+-|+++.+..++...+.... +..++. .| +..+++.++.+
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~------~HG~r~~~~p-~T~YV~~~~e~~vP~pndg~~l~d~~ 169 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKG------IHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVA 169 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCS------EEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGG
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCC------CceeecccCC-CeEEEEccCccccccCCCCccccchh
Confidence 38999 4444 9999999999988777665543322 233333 34 55566665552
Q ss_pred ---CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCC---------------cEEEEEe--------
Q psy6213 74 ---GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDG---------------TMRLFDI-------- 127 (330)
Q Consensus 74 ---g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~---------------~i~i~d~-------- 127 (330)
+.+.++|.++ .+....... .+....+.++| +++++++.+.+. .+.+++.
T Consensus 170 ~y~~~~t~ID~~t---m~V~~QV~V-~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~ 244 (459)
T d1fwxa2 170 NYVNVFTAVDADK---WEVAWQVLV-SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 244 (459)
T ss_dssp -EEEEEEEEETTT---TEEEEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred hcceEEEEEecCC---ceEEEEeee-CCChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhh
Confidence 2256677776 444433332 34566788998 788888766431 2333432
Q ss_pred ---------------ecC---ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccce----------ee
Q psy6213 128 ---------------RCQ---ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCF----------YQ 179 (330)
Q Consensus 128 ---------------~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~----------~~ 179 (330)
+.. ..+..+. -......+.++|||+++++++.-+.++.++|+++-.... ..
T Consensus 245 ~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~ 323 (459)
T d1fwxa2 245 AGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 323 (459)
T ss_dssp HTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEE
T ss_pred cCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEe
Confidence 211 1111121 122345688999999988888899999999997421111 11
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCC
Q psy6213 180 FTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSI 215 (330)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 215 (330)
-....-.....+|...|.-..+---|.+|.-|++..
T Consensus 324 e~elglgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 324 EPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp CCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence 111223445678888886666666899999999853
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.33 E-value=0.00026 Score=53.48 Aligned_cols=227 Identities=9% Similarity=0.088 Sum_probs=146.5
Q ss_pred eeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecC-ceee
Q psy6213 56 DVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ-ESTK 134 (330)
Q Consensus 56 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~ 134 (330)
+.-.+| ..+.||.-+ ...+.++|+++ ...++.+.- ..+|.--.|- +.+.|+-.+. ..|+-|+++.. ++.+
T Consensus 67 sAIMhP-~~~IiALra-g~~LQiFnlet---K~klks~~~-~e~VvfWkWi--s~~~L~lVT~-taVYHW~~~g~s~P~k 137 (327)
T d1utca2 67 SAIMNP-ASKVIALKA-GKTLQIFNIEM---KSKMKAHTM-TDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVK 137 (327)
T ss_dssp EEEECS-SSSEEEEEE-TTEEEEEETTT---TEEEEEEEC-SSCCCEEEES--SSSEEEEECS-SEEEEEESSSSCCCEE
T ss_pred hhhcCC-CCcEEEEec-CCeEEEEehhH---hhhhceEEc-CCCcEEEEec--CCCEEEEEcC-CceEEEcccCCCCchh
Confidence 344567 788887766 56899999998 555555543 3466666665 5777777764 58999999543 4555
Q ss_pred eeecC----CCCeEEEEEcCCCCcEEEEE------ecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCC---CEEEE
Q psy6213 135 IFHSN----TESVRDVEFNPHSPYAFASV------SENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEH---AWLAT 201 (330)
Q Consensus 135 ~~~~~----~~~v~~~~~~~~~~~~~~~~------~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~ 201 (330)
.+..| ...|..-..+++.++++++| .-.|.+.+|..+. +.-+.+++|.+.-..+.+..+. ++++.
T Consensus 138 ~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er--~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~f 215 (327)
T d1utca2 138 MFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR--KVSQPIEGHAASFAQFKMEGNAEESTLFCF 215 (327)
T ss_dssp EEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT--TEEEEECCSEEEEEEECCTTCSSCEEEEEE
T ss_pred hhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc--CcCccccceeeeeEEEEcCCCCCCceEEEE
Confidence 55543 34677778889999877765 2246788999875 3456677776554444443211 23333
Q ss_pred Ee---cCCcEEEEeCCCCcc--c-------cceec---cccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccce
Q psy6213 202 AS---RDKTIKVWDLSIKPS--L-------EYSIN---TIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLA 266 (330)
Q Consensus 202 ~~---~dg~i~i~d~~~~~~--~-------~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~ 266 (330)
+. ..+.+++.++..... . ....+ ...-..++..++.-..++... .-|.+++||++++.. +.
T Consensus 216 a~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT---K~G~i~lyDleTgt~-i~ 291 (327)
T d1utca2 216 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTC-IY 291 (327)
T ss_dssp EEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCE-EE
T ss_pred EECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe---cCcEEEEEEcccccE-EE
Confidence 32 236799999876422 0 01111 123456777777766544444 599999999999976 66
Q ss_pred EeecCCCCeEEEEEecCCCEEEEeecCCeEe
Q psy6213 267 SFTEHKDVVSGLAWRGDPQLFIASSRVSIIP 297 (330)
Q Consensus 267 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 297 (330)
.-+-...+|...+-+.+..-+++...+|.|.
T Consensus 292 ~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 292 MNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp EEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 6666677777666666656677777888765
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.30 E-value=0.00046 Score=55.02 Aligned_cols=188 Identities=16% Similarity=0.167 Sum_probs=117.9
Q ss_pred CCCEEEEEe-cCCcEEEEEeecCceeeeeec-CCCCeEEEEEcC--CCCcEEEEEecC------------------CcEE
Q psy6213 109 ESNWLISGS-QDGTMRLFDIRCQESTKIFHS-NTESVRDVEFNP--HSPYAFASVSEN------------------GTIQ 166 (330)
Q Consensus 109 ~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~~~~~~~~d------------------g~i~ 166 (330)
||+++++.. .+++|.+.|+++.+..+.... ....+..+...+ +..| ++.+++. +.+.
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~Y-V~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNY-VFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSE-EEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEE-EEccCccccccCCCCccccchhhcceEEE
Confidence 456666654 678999999999888665543 334566666654 4444 3333332 2356
Q ss_pred EEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCC--------------------------------------cE
Q psy6213 167 QWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDK--------------------------------------TI 208 (330)
Q Consensus 167 i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------------------------------~i 208 (330)
..|..+. +...... -.+....++++++|+++++.+.+. .+
T Consensus 177 ~ID~~tm-~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV 254 (459)
T d1fwxa2 177 AVDADKW-EVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 254 (459)
T ss_dssp EEETTTT-EEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEecCCc-eEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence 7787763 3333332 234567899999999998887432 12
Q ss_pred EEEeCCCC--ccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCc-------c---ceEeecCCCCeE
Q psy6213 209 KVWDLSIK--PSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYI-------P---LASFTEHKDVVS 276 (330)
Q Consensus 209 ~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~-------~---~~~~~~~~~~v~ 276 (330)
.+-|.+.. .......+.......+..+|||+++++++. .+.++.++|+++-.. + +.......-...
T Consensus 255 ~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGK--Ls~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL 332 (459)
T d1fwxa2 255 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL 332 (459)
T ss_dssp EEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE
T ss_pred eeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCC--cCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc
Confidence 33343321 112223444455678899999999888888 899999999974221 1 111112233556
Q ss_pred EEEEecCCCEEEEeecCCeEeeeec
Q psy6213 277 GLAWRGDPQLFIASSRVSIIPRAKN 301 (330)
Q Consensus 277 ~~~~~~~~~~l~s~~~dg~i~iw~~ 301 (330)
..+|+.+|....|.--|..|.-|+.
T Consensus 333 ht~fd~~g~aytslfids~v~kw~~ 357 (459)
T d1fwxa2 333 HTAFDGRGNAYTSLFLDSQVVKWNI 357 (459)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEH
T ss_pred ccccCCCceEEEEeeccceEEEEec
Confidence 7789888865666668999999974
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.06 E-value=0.00059 Score=54.78 Aligned_cols=275 Identities=6% Similarity=-0.056 Sum_probs=131.4
Q ss_pred ceEEEEeeCCCe-eecC-C-----C------eEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC
Q psy6213 7 VHKHGLKADNGL-AQPS-R-----N------VFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN 73 (330)
Q Consensus 7 v~~~~~s~~~~~-~~~g-d-----~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 73 (330)
+.......+|+. +..| + + .+.+||..++............. ..+...++.+ ++.+++.|+.+
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~----~~~~~~~~~~-~g~i~v~Gg~~ 96 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD----MFCPGISMDG-NGQIVVTGGND 96 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC----CSSCEEEECT-TSCEEEECSSS
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcc----cceeEEEEec-CCcEEEeecCC
Confidence 334444557777 4433 1 1 36789998876544322221111 1124567777 88888888765
Q ss_pred -CcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC------CcEEEEEeecCceeeeeec--------
Q psy6213 74 -GAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD------GTMRLFDIRCQESTKIFHS-------- 138 (330)
Q Consensus 74 -g~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~-------- 138 (330)
..+.+||..+. ........... ..-...+..+ ++++++.|+.+ ..+.+||..+.+-...-..
T Consensus 97 ~~~~~~yd~~~~-~w~~~~~~~~~-r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~ 173 (387)
T d1k3ia3 97 AKKTSLYDSSSD-SWIPGPDMQVA-RGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA 173 (387)
T ss_dssp TTCEEEEEGGGT-EEEECCCCSSC-CSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCC
T ss_pred CcceeEecCccC-ccccccccccc-ccccceeeec-CCceeeeccccccccccceeeeecCCCCceeecCCCcccccccc
Confidence 57999998762 12221111111 1223445554 78888888753 3689999876543211000
Q ss_pred -CC-----CCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee-eecc----CCC--CeEEEEE-cCCCCEEEEEec
Q psy6213 139 -NT-----ESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY-QFTA----HSG--PIFACDW-HPEHAWLATASR 204 (330)
Q Consensus 139 -~~-----~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~----~~~--~i~~~~~-~~~~~~l~~~~~ 204 (330)
+. ..-..+...++++ ++..+...+.+..+|..+..-... .... +.. .-.++.+ ..+++.++.|+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~ 252 (387)
T d1k3ia3 174 DKQGLYRSDNHAWLFGWKKGS-VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS 252 (387)
T ss_dssp CTTGGGTTTCSCCEEECGGGC-EEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred cccceeeccceeEEEEeCCCC-EEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEec
Confidence 00 0001122223444 455566666666777665221100 0000 111 1122222 235667777763
Q ss_pred CC--------cEEEEeCCCCcc---c---cceeccccceEEEEEcCCCCeEEEEeecc--------cCCeEEEEEccCCC
Q psy6213 205 DK--------TIKVWDLSIKPS---L---EYSINTIASVSRIKWRPQRKFHLASCSLV--------VDSSVNVWDIRRPY 262 (330)
Q Consensus 205 dg--------~i~i~d~~~~~~---~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------~~~~i~i~d~~~~~ 262 (330)
.. ...+.++..... . .........-.+....++++.+++++... ....+.+||..+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~ 332 (387)
T d1k3ia3 253 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 332 (387)
T ss_dssp SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred cCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCe
Confidence 21 233444332211 0 11111222233455668888655554310 01257889987664
Q ss_pred ccceEeecCC-CC-e-EEEEEecCCCEEEEeec
Q psy6213 263 IPLASFTEHK-DV-V-SGLAWRGDPQLFIASSR 292 (330)
Q Consensus 263 ~~~~~~~~~~-~~-v-~~~~~~~~~~~l~s~~~ 292 (330)
- ..+.... .. - ......+||++++.|+.
T Consensus 333 W--~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 333 F--YKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp E--EECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred E--EECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 2 1121111 11 1 12335689999999884
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.81 E-value=0.0054 Score=49.91 Aligned_cols=244 Identities=13% Similarity=0.120 Sum_probs=128.8
Q ss_pred ceEEEEeeCCCeeecC-------CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC------
Q psy6213 7 VHKHGLKADNGLAQPS-------RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN------ 73 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g-------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------ 73 (330)
+..+++|||+++++.+ .-.++++|+++++..... +.... ...++|.+ +++.|+....+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~~-------~~~~~W~~-D~~~~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVK-------FSCMAWTH-DGKGMFYNAYPQQDGKS 197 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEEC-------SCCEEECT-TSSEEEEEECCCCSSCC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-ccccc-------ccceEEcC-CCCEEEEEEeccccCcc
Confidence 4567889999995433 347999999999866422 21111 15689998 66665543222
Q ss_pred ----------CcEEEEECCCCCCCceeEEecccc--cceeEEEEEecCCCEEEEEec---CCcEEEE--EeecCce----
Q psy6213 74 ----------GAVVVWNLGQISRSKQERVFNDHK--RTVNKVSFHYVESNWLISGSQ---DGTMRLF--DIRCQES---- 132 (330)
Q Consensus 74 ----------g~i~iw~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~~l~~~~~---d~~i~i~--d~~~~~~---- 132 (330)
..|..+.+.+.. ......+.... ..+..+..++ ++++++.... +....+| |+.....
T Consensus 198 ~~~~~~~~~~~~v~~h~lgt~~-~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~ 275 (430)
T d1qfma1 198 DGTETSTNLHQKLYYHVLGTDQ-SEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (430)
T ss_dssp SSSCCCCCCCCEEEEEETTSCG-GGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccCCcceEEEEECCCCc-cccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCccccccc
Confidence 257777776632 22233333333 2355566675 7777664322 3344444 4432211
Q ss_pred ----eeeeecCCCCeEEEEEcCCCCcEEEEEe---cCCcEEEEecCCCccc-eee-eccCCCCeEEEEEcCCCCEEEEEe
Q psy6213 133 ----TKIFHSNTESVRDVEFNPHSPYAFASVS---ENGTIQQWDVRRPEKC-FYQ-FTAHSGPIFACDWHPEHAWLATAS 203 (330)
Q Consensus 133 ----~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~dg~i~i~d~~~~~~~-~~~-~~~~~~~i~~~~~~~~~~~l~~~~ 203 (330)
............-+ -+.++. +++... .++.|...++...... ... +..+...+..-.+...+.+|+...
T Consensus 276 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~ 353 (430)
T d1qfma1 276 ILKWVKLIDNFEGEYDYV-TNEGTV-FTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (430)
T ss_dssp SCCCEEEECSSSSCEEEE-EEETTE-EEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred ccceeEeecccccceEEE-ecCCce-eecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEE
Confidence 11122122222222 222232 344333 2466777777654321 223 333444454444444455565554
Q ss_pred -cCC--cEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEee-cccCCeEEEEEccCCCc
Q psy6213 204 -RDK--TIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCS-LVVDSSVNVWDIRRPYI 263 (330)
Q Consensus 204 -~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~~~~i~i~d~~~~~~ 263 (330)
.++ .|+++++.++..........+.+..+...++...+....+ ...-.++.-+|+.+++.
T Consensus 354 ~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 354 LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 554 4888999877554444444456666666666665544433 12347888999988754
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.81 E-value=0.0033 Score=47.37 Aligned_cols=216 Identities=14% Similarity=0.214 Sum_probs=132.9
Q ss_pred EEEEeeCCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC
Q psy6213 9 KHGLKADNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS 87 (330)
Q Consensus 9 ~~~~s~~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 87 (330)
+.-.+|..+.++-- ..++.|+|+++.+.+..+..... |.--.|- +.+.|+..+. ..|+-|+++.. .
T Consensus 67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~~e~--------VvfWkWi--s~~~L~lVT~-taVYHW~~~g~--s 133 (327)
T d1utca2 67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDD--------VTFWKWI--SLNTVALVTD-NAVYHWSMEGE--S 133 (327)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSC--------CCEEEES--SSSEEEEECS-SEEEEEESSSS--C
T ss_pred hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCC--------cEEEEec--CCCEEEEEcC-CceEEEcccCC--C
Confidence 34457877776655 78999999999888777665532 3445665 4666666654 47999999653 3
Q ss_pred ceeEEecccc----cceeEEEEEecCCCEEEEEe-------cCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCC--Cc
Q psy6213 88 KQERVFNDHK----RTVNKVSFHYVESNWLISGS-------QDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHS--PY 154 (330)
Q Consensus 88 ~~~~~~~~~~----~~i~~i~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~ 154 (330)
.+.+.+..|. ..|..-..++ +.++++..+ -.|.+.+|..+ .+.-+.+++|......+.+..+. ..
T Consensus 134 ~P~k~fdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~ 211 (327)
T d1utca2 134 QPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEEST 211 (327)
T ss_dssp CCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEEEEEEECCTTCSSCEE
T ss_pred CchhhhhhcccccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEec-cCcCccccceeeeeEEEEcCCCCCCce
Confidence 4566666554 3455556665 666665432 23678888876 34455666665544444433211 12
Q ss_pred EEEEEe---cCCcEEEEecCCCcc--c-e-----eeec---cCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCcccc
Q psy6213 155 AFASVS---ENGTIQQWDVRRPEK--C-F-----YQFT---AHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLE 220 (330)
Q Consensus 155 ~~~~~~---~dg~i~i~d~~~~~~--~-~-----~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 220 (330)
+++.+. ..+.+++.++..+.. + . ..+- .-.+-..++..++....+..-+.-|.+.+||+.++..+.
T Consensus 212 lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~ 291 (327)
T d1utca2 212 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 291 (327)
T ss_dssp EEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEE
Confidence 343332 236788888865321 1 1 1111 113445678888888899999999999999999996655
Q ss_pred ceeccccceEEEEEcCCCC
Q psy6213 221 YSINTIASVSRIKWRPQRK 239 (330)
Q Consensus 221 ~~~~~~~~v~~~~~~~~~~ 239 (330)
...-....|...+-+.+..
T Consensus 292 ~nRIs~~~iF~~a~~~~~~ 310 (327)
T d1utca2 292 MNRISGETIFVTAPHEATA 310 (327)
T ss_dssp EEECCSSCEEEEEEETTTT
T ss_pred EeecCCCceEEeccCCCCc
Confidence 5444445554444444433
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.52 E-value=0.019 Score=48.35 Aligned_cols=150 Identities=10% Similarity=0.047 Sum_probs=80.6
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEc------CCCcEEEEECCCCCCC
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGA------TNGAVVVWNLGQISRS 87 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~ 87 (330)
+++++... |+.+.-.|.++++..-.......... ..++.--.- -++.++.+. ..|.|.-+|..+ +
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~---~~~t~~p~v--~~~~vivg~~~~~~~~~G~v~a~D~~T---G 186 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG---STLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKT---G 186 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT---CBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTT---C
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccc---cceeecCeE--eCCeEEEeeccccccccCcEEEEECCC---C
Confidence 34554455 89888889999987655443221110 011111111 123444444 367899999888 4
Q ss_pred ceeEEeccc-------------------------------------ccce-eEEEEEecCCCEEEEEec-----------
Q psy6213 88 KQERVFNDH-------------------------------------KRTV-NKVSFHYVESNWLISGSQ----------- 118 (330)
Q Consensus 88 ~~~~~~~~~-------------------------------------~~~i-~~i~~~~~~~~~l~~~~~----------- 118 (330)
+.+-.+... ...+ ...++.+ ...++..+..
T Consensus 187 ~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~tg~~~p~~~~~r~ 265 (571)
T d2ad6a1 187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGSGNPAPWNETMRP 265 (571)
T ss_dssp CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSC
T ss_pred cEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch-hcCeeeeecccccCccccccc
Confidence 444332211 0111 2345555 4555554433
Q ss_pred -----CCcEEEEEeecCceeeeeecCCC---------CeEEEEEcCCCC--cEEEEEecCCcEEEEecCCC
Q psy6213 119 -----DGTMRLFDIRCQESTKIFHSNTE---------SVRDVEFNPHSP--YAFASVSENGTIQQWDVRRP 173 (330)
Q Consensus 119 -----d~~i~i~d~~~~~~~~~~~~~~~---------~v~~~~~~~~~~--~~~~~~~~dg~i~i~d~~~~ 173 (330)
...+...|.++++.+-.++.... +........+++ ..++.++.+|.++++|..++
T Consensus 266 g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG 336 (571)
T d2ad6a1 266 GDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENG 336 (571)
T ss_dssp SCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTC
T ss_pred cccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCC
Confidence 24678889999988776664221 111122222332 35677888999999998874
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.35 E-value=0.022 Score=45.09 Aligned_cols=232 Identities=6% Similarity=0.034 Sum_probs=114.0
Q ss_pred ceEEEEeeCCCeeecC---CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC------CcEE
Q psy6213 7 VHKHGLKADNGLAQPS---RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN------GAVV 77 (330)
Q Consensus 7 v~~~~~s~~~~~~~~g---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~ 77 (330)
..+.++.++|++++.| ...+.+||..+.............. -...+..+ ++++++.|+.+ ..+.
T Consensus 78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~------~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~ 150 (387)
T d1k3ia3 78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG------YQSSATMS-DGRVFTIGGSWSGGVFEKNGE 150 (387)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS------SCEEEECT-TSCEEEECCCCCSSSCCCCEE
T ss_pred eeEEEEecCCcEEEeecCCCcceeEecCccCccccccccccccc------ccceeeec-CCceeeeccccccccccceee
Confidence 3456788999995555 5789999999876654333222211 13455565 88888888753 3588
Q ss_pred EEECCCCCCCceeEEec-------ccccc----eeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeee--c----CC
Q psy6213 78 VWNLGQISRSKQERVFN-------DHKRT----VNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFH--S----NT 140 (330)
Q Consensus 78 iw~~~~~~~~~~~~~~~-------~~~~~----i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~----~~ 140 (330)
+||..+.. ........ .+... -....+...+++.+..++.++.+..+|..+........ . ..
T Consensus 151 ~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (387)
T d1k3ia3 151 VYSPSSKT-WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 229 (387)
T ss_dssp EEETTTTE-EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred eecCCCCc-eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCc
Confidence 99987621 11110000 00000 01112222256677777766677777765543322110 0 11
Q ss_pred --CCeEEEEEcCCCCcEEEEEecCC--------cEEEEecCCCcc---ceeeec--cCCCCeEEEEEcCCCCEEEEEecC
Q psy6213 141 --ESVRDVEFNPHSPYAFASVSENG--------TIQQWDVRRPEK---CFYQFT--AHSGPIFACDWHPEHAWLATASRD 205 (330)
Q Consensus 141 --~~v~~~~~~~~~~~~~~~~~~dg--------~i~i~d~~~~~~---~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d 205 (330)
..-.++.+...+..+++.|+... ...+.++..... ...... .....-.+....++++++++|+.+
T Consensus 230 ~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~ 309 (387)
T d1k3ia3 230 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 309 (387)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred ccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcc
Confidence 11123333322223566665321 233333322111 111111 112223345566899999998853
Q ss_pred C-----------cEEEEeCCCCccccc-eecc-ccceEEEEEcCCCCeEEEEee
Q psy6213 206 K-----------TIKVWDLSIKPSLEY-SINT-IASVSRIKWRPQRKFHLASCS 246 (330)
Q Consensus 206 g-----------~i~i~d~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~~~~~ 246 (330)
. .+.+||..+.+-... .... ...-....+.+||+.+++++.
T Consensus 310 ~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 310 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 1 478899876521111 1111 111233456799997666653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.23 E-value=0.028 Score=43.84 Aligned_cols=170 Identities=12% Similarity=0.111 Sum_probs=96.3
Q ss_pred CCcEEEEEeecCceee-ee--ecCC-----CCeEEEEE--cCCCCcEEEEEe---cCCcEEEEecCCCccceee---ec-
Q psy6213 119 DGTMRLFDIRCQESTK-IF--HSNT-----ESVRDVEF--NPHSPYAFASVS---ENGTIQQWDVRRPEKCFYQ---FT- 181 (330)
Q Consensus 119 d~~i~i~d~~~~~~~~-~~--~~~~-----~~v~~~~~--~~~~~~~~~~~~---~dg~i~i~d~~~~~~~~~~---~~- 181 (330)
.|.|.++|+++.+... .+ .+.. -....+.. .+++...|++.. ...+|.+|++......+.. +.
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 4889999987654321 11 1110 12233333 455654455543 3567888888654332221 11
Q ss_pred cCCCCeEEEEEcCCCCEEEEEec---------------CCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEee
Q psy6213 182 AHSGPIFACDWHPEHAWLATASR---------------DKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCS 246 (330)
Q Consensus 182 ~~~~~i~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 246 (330)
......+.+.+..++.+++|-.. -+.-.+|..... ............+.++++|++++++++.+
T Consensus 147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~-~~~~~~~~l~~pNGI~~s~d~~~lyVa~t 225 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-DVRVVAEGFDFANGINISPDGKYVYIAEL 225 (340)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS-CEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC-ceEEEcCCCCccceeEECCCCCEEEEEeC
Confidence 12245788999889988887321 122334443333 22233334467889999999999888887
Q ss_pred cccCCeEEEEEccCCCccceE--eecCCCCeEEEEEecCCCEEEEeec
Q psy6213 247 LVVDSSVNVWDIRRPYIPLAS--FTEHKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 247 ~~~~~~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
..+.|+.|++..... +.. ...-....-.+.+.+++..+..++.
T Consensus 226 --~~~~i~~y~~~~~~~-l~~~~~~~l~~~pDNi~~d~~~g~lwva~~ 270 (340)
T d1v04a_ 226 --LAHKIHVYEKHANWT-LTPLRVLSFDTLVDNISVDPVTGDLWVGCH 270 (340)
T ss_dssp --GGTEEEEEEECTTSC-EEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred --CCCeEEEEEeCCCcc-cceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence 799999999976543 221 1122345677888764333444443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=97.14 E-value=0.035 Score=43.24 Aligned_cols=188 Identities=9% Similarity=0.120 Sum_probs=109.9
Q ss_pred CCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcC----CCC-cEEEEEe-c-C--CcEEEEecCCCccceee
Q psy6213 109 ESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNP----HSP-YAFASVS-E-N--GTIQQWDVRRPEKCFYQ 179 (330)
Q Consensus 109 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~----~~~-~~~~~~~-~-d--g~i~i~d~~~~~~~~~~ 179 (330)
+..+++.....+-|++||++ |+.+..+. .+.+..+..-. .++ .-+++++ + + ..|.+|.+......+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 45667766777779999996 77777664 34555554332 111 1244444 2 2 25777877543332332
Q ss_pred ecc-------CCCCeEEEEE--cCC-CC-EEEEEecCCcEEEEeCCCCc------cccceeccccceEEEEEcCCCCeEE
Q psy6213 180 FTA-------HSGPIFACDW--HPE-HA-WLATASRDKTIKVWDLSIKP------SLEYSINTIASVSRIKWRPQRKFHL 242 (330)
Q Consensus 180 ~~~-------~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~ 242 (330)
+.. ....+..+|+ ++. |. ++++...+|.+..|.+.... ...........+..+.+.+....|+
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly 195 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY 195 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence 221 1224667777 554 44 56677788999888774321 1223344567899999999988866
Q ss_pred EEeecccCCeEEEEEccCC--Cc--cceEee--cCCCCeEEEEEec----CCCEEEEeecCCeEeeeecc
Q psy6213 243 ASCSLVVDSSVNVWDIRRP--YI--PLASFT--EHKDVVSGLAWRG----DPQLFIASSRVSIIPRAKNI 302 (330)
Q Consensus 243 ~~~~~~~~~~i~i~d~~~~--~~--~~~~~~--~~~~~v~~~~~~~----~~~~l~s~~~dg~i~iw~~~ 302 (330)
++- ++..+..++.... .. .+.... ...+.+.+++.-. +|-+|+|.-.+++..+|+..
T Consensus 196 isE---E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~ 262 (353)
T d1h6la_ 196 IAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ 262 (353)
T ss_dssp EEE---TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred Eec---CccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence 664 4666666665422 11 111111 1345788887653 34566666678889999754
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.99 E-value=0.076 Score=44.49 Aligned_cols=115 Identities=11% Similarity=0.051 Sum_probs=61.0
Q ss_pred CCCeeecC-CCeEEEEEcCCcceeeeeceeecccccc----ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCce
Q psy6213 15 DNGLAQPS-RNVFKIFLIKDTEFVETHNLRVGKNINL----NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQ 89 (330)
Q Consensus 15 ~~~~~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 89 (330)
+|.+.++. ++.|.-.|.++|+.+=.+.......... ...-..++. .+..++.+..++.+.-.|..+ ++.
T Consensus 66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~g~l~Alda~t---G~~ 139 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL---WGDKVYVGTLDGRLIALDAKT---GKA 139 (560)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE---EBTEEEEECTTSEEEEEETTT---CCE
T ss_pred CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce---eCCeEEEEeCCCEEEEEECCC---CcE
Confidence 44443444 7888888999888775543322111000 000011221 245677888889888888877 455
Q ss_pred eEEecccc--c--ceeEEEEEecCCCEEEEEec------CCcEEEEEeecCceeeeee
Q psy6213 90 ERVFNDHK--R--TVNKVSFHYVESNWLISGSQ------DGTMRLFDIRCQESTKIFH 137 (330)
Q Consensus 90 ~~~~~~~~--~--~i~~i~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~ 137 (330)
+-...... . .+..--.- ....++.+.. .|.|.-+|.++++.+-.+.
T Consensus 140 ~w~~~~~~~~~~~~~~~~p~v--~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 140 IWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp EEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EeccCccCcccceeeeeeeee--ecCcccccccceeccccceEEEEECCCceEEeeee
Confidence 44433211 1 11100001 1233444332 3679999999999877664
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.76 E-value=0.12 Score=43.30 Aligned_cols=54 Identities=6% Similarity=0.082 Sum_probs=33.1
Q ss_pred CcEEEEEeecCceeeeeecCCCC-----------eEEEEEcCCCCcEEEEEecCCcEEEEecCCC
Q psy6213 120 GTMRLFDIRCQESTKIFHSNTES-----------VRDVEFNPHSPYAFASVSENGTIQQWDVRRP 173 (330)
Q Consensus 120 ~~i~i~d~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 173 (330)
..|.-.|+++++..-.++..... ...+.........++.+..+|.++++|..++
T Consensus 270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG 334 (560)
T d1kv9a2 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG 334 (560)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCC
Confidence 35777788888877665432211 1222222222235777888999999998874
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.72 E-value=0.13 Score=43.14 Aligned_cols=115 Identities=13% Similarity=0.183 Sum_probs=61.8
Q ss_pred CCCe-eecC-CCeEEEEEc-CCcceeeeeceeecccccc----ccceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCC
Q psy6213 15 DNGL-AQPS-RNVFKIFLI-KDTEFVETHNLRVGKNINL----NFSCNDVAWSCIEENHIATGATNGAVVVWNLGQISRS 87 (330)
Q Consensus 15 ~~~~-~~~g-d~~i~iw~~-~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 87 (330)
+|.. +.++ ++.|.-.|. ++|+.+=.+.......... ...-..+++. +..++.++.||.+.-.|.++ +
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~---~~~i~~~~~~g~l~alda~t---G 135 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKT---G 135 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTT---C
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee---CCeEEEEeCCCcEEeeehhh---h
Confidence 4555 4444 678888886 4677665544322111100 0000223432 35677788899999889888 4
Q ss_pred ceeEEecc---cc-cceeEEEEEecCCCEEEEEe------cCCcEEEEEeecCceeeeee
Q psy6213 88 KQERVFND---HK-RTVNKVSFHYVESNWLISGS------QDGTMRLFDIRCQESTKIFH 137 (330)
Q Consensus 88 ~~~~~~~~---~~-~~i~~i~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~ 137 (330)
+..-.... +. ..++.--.-. + ..++.+. .+|.|+-+|+++++.+-.+.
T Consensus 136 ~~~w~~~~~~~~~~~~~t~~p~v~-~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 136 KINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred hhhccccccccccccceeecCeEe-C-CeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 44433221 11 1111111111 3 3444444 26789999999998877654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.70 E-value=0.087 Score=40.94 Aligned_cols=194 Identities=6% Similarity=-0.001 Sum_probs=106.5
Q ss_pred eEEEEeeCCCe-eecC-------------CCeEEEEEcCCccee-eeeceeeccccccccceeeeeecc-cCCc-EEEEE
Q psy6213 8 HKHGLKADNGL-AQPS-------------RNVFKIFLIKDTEFV-ETHNLRVGKNINLNFSCNDVAWSC-IEEN-HIATG 70 (330)
Q Consensus 8 ~~~~~s~~~~~-~~~g-------------d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-~l~~~ 70 (330)
-.++..|||.. +++| .|.|.++|+++.+.. ..+...........+....+.... .++. +|++.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 35778888888 6664 288999998764322 222222222222223334444422 1333 44443
Q ss_pred ---cCCCcEEEEECCCCCC-CceeEEecc-cccceeEEEEEecCCCEEEEEe--c-------------CCcEEEEEeecC
Q psy6213 71 ---ATNGAVVVWNLGQISR-SKQERVFND-HKRTVNKVSFHYVESNWLISGS--Q-------------DGTMRLFDIRCQ 130 (330)
Q Consensus 71 ---~~dg~i~iw~~~~~~~-~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~--~-------------d~~i~i~d~~~~ 130 (330)
....+|.+|++..... ......+.. .....+++.+.. ++.+++|-. . -+...+|..+.+
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~ 196 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 196 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence 2456788888865321 111222221 224578888886 777777731 1 123445555444
Q ss_pred ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCcccee-eeccCCCCeEEEEEcCCCCEEEEEe
Q psy6213 131 ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFY-QFTAHSGPIFACDWHPEHAWLATAS 203 (330)
Q Consensus 131 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~ 203 (330)
+.. .....-...+.++++|++++++++-+..+.|+.|++........ ....-.+..-.+.+.+++..+.+++
T Consensus 197 ~~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 197 DVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp CEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred ceE-EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 432 22223356789999999998888888899999999875432211 1112344566778876443344444
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.1 Score=41.04 Aligned_cols=178 Identities=11% Similarity=0.020 Sum_probs=102.8
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCC--------CCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEE
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQ--------ISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLF 125 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~ 125 (330)
.+-++.++ ...++++|+.++ +.|..+.. .......... .-..|..++|+. +.++.. .++.+..+
T Consensus 39 ~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~---d~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 39 LQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG---DQVLVS-TRNALYSL 110 (381)
T ss_dssp CBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET---TEEEEE-ESSEEEEE
T ss_pred cceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC---CEEEEE-eCCCEEEE
Confidence 46788887 777888888775 66766422 0001111111 123578888873 345544 35678888
Q ss_pred EeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeec-----cCCCCeEEEEEcCCCCEEE
Q psy6213 126 DIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFT-----AHSGPIFACDWHPEHAWLA 200 (330)
Q Consensus 126 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~ 200 (330)
+...-...........++..+.++|.. ++....+|.+.++++..... ..... .-.+.+.+++|++.|+.++
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p~~---~~l~~~~~~~~~~~l~~~~~-~~~~~~v~~~~~~~~~~~v~ws~kgkq~v 186 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKST-KQLAQNVTSFDVTNSQLAVLLKDRSFQSF 186 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCE-EEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred EeeccccccccccccccccceecCCce---eEEEecCCCEEEEEeccCcc-ccccCCcceEEecCCceEEEEeCCcEEEE
Confidence 876654444444456678888888863 56667789999999987432 11110 1235678888888888887
Q ss_pred EEecCCcEEEE-eCCCCccccceeccccceEEEEEcCCCCeEEEE
Q psy6213 201 TASRDKTIKVW-DLSIKPSLEYSINTIASVSRIKWRPQRKFHLAS 244 (330)
Q Consensus 201 ~~~~dg~i~i~-d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 244 (330)
++..++ ..+- ++...............+.++.|-.+..++++-
T Consensus 187 ~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 187 AWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 764332 2221 222221111112234568889998777654433
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.59 E-value=0.11 Score=40.47 Aligned_cols=197 Identities=14% Similarity=0.211 Sum_probs=115.3
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEe---cC--CCEEEEEec-C---CcEEEEEeecC-ce
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHY---VE--SNWLISGSQ-D---GTMRLFDIRCQ-ES 132 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~--~~~l~~~~~-d---~~i~i~d~~~~-~~ 132 (330)
...+++.....+-|.+||+. ++.+..+. .+.++.+..-. -+ ..-+++++. + .+|.+|.+... ..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~----G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~ 112 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE----GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT----CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred CccEEEEEcCcCCEEEEcCC----CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence 45567766777779999986 45555543 35566655431 01 122444442 2 36888887632 22
Q ss_pred eeeeec-------CCCCeEEEEE--cCC-CCcEEEEEecCCcEEEEecCCCc------cceeeeccCCCCeEEEEEcCCC
Q psy6213 133 TKIFHS-------NTESVRDVEF--NPH-SPYAFASVSENGTIQQWDVRRPE------KCFYQFTAHSGPIFACDWHPEH 196 (330)
Q Consensus 133 ~~~~~~-------~~~~v~~~~~--~~~-~~~~~~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~i~~~~~~~~~ 196 (330)
+..+.. ....+..+++ ++. +...+++...+|.+..|.+.... ..++.+. -...+-.+.+.+..
T Consensus 113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~ 191 (353)
T d1h6la_ 113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEY 191 (353)
T ss_dssp EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTT
T ss_pred cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCC
Confidence 322221 1123556665 565 44345667778999888774321 2233443 34678899999988
Q ss_pred CEEEEEecCCcEEEEeCCCCcc----ccce---eccccceEEEEEc--CCC-CeEEEEeecccCCeEEEEEccCCCccce
Q psy6213 197 AWLATASRDKTIKVWDLSIKPS----LEYS---INTIASVSRIKWR--PQR-KFHLASCSLVVDSSVNVWDIRRPYIPLA 266 (330)
Q Consensus 197 ~~l~~~~~dg~i~i~d~~~~~~----~~~~---~~~~~~v~~~~~~--~~~-~~l~~~~~~~~~~~i~i~d~~~~~~~~~ 266 (330)
..|+.+-++.-+..++...... .... ......+..++.- +++ .||+++.. .+++..+||...+...+.
T Consensus 192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ--G~n~f~vydr~~~~~~~g 269 (353)
T d1h6la_ 192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ--GNSSYAIYERQGQNKYVA 269 (353)
T ss_dssp TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG--GGTEEEEEESSTTCCEEE
T ss_pred CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC--CCCeEEEEecCCCccccc
Confidence 8999998877676666542211 1111 1124556666653 333 37777776 689999999987644344
Q ss_pred Ee
Q psy6213 267 SF 268 (330)
Q Consensus 267 ~~ 268 (330)
.+
T Consensus 270 ~F 271 (353)
T d1h6la_ 270 DF 271 (353)
T ss_dssp EE
T ss_pred eE
Confidence 44
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.32 E-value=0.2 Score=40.58 Aligned_cols=57 Identities=7% Similarity=-0.118 Sum_probs=37.3
Q ss_pred ccceEEEEeeCCCeeecC--CCeEEEEEcCCcceeeeeceeecc-ccccccceeeeeecc
Q psy6213 5 SPVHKHGLKADNGLAQPS--RNVFKIFLIKDTEFVETHNLRVGK-NINLNFSCNDVAWSC 61 (330)
Q Consensus 5 ~~v~~~~~s~~~~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 61 (330)
..-++|+|.|||+++++. .|.|++++.++++........... ...-......++++|
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P 86 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP 86 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence 456799999999996665 799999998877655433322110 011123347899988
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.23 E-value=0.21 Score=40.08 Aligned_cols=226 Identities=10% Similarity=0.086 Sum_probs=115.5
Q ss_pred cceeeeeecccCCcEEEEE-cCCC----cEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecC-------
Q psy6213 52 FSCNDVAWSCIEENHIATG-ATNG----AVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQD------- 119 (330)
Q Consensus 52 ~~v~~~~~~~~~~~~l~~~-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d------- 119 (330)
+.+...+++| +++++|.+ +.+| .++++|+.+ ++.+...- .......+.|.+ ++..|+....+
T Consensus 125 ~~~~~~~~Sp-d~~~la~s~d~~G~e~~~l~v~Dl~t---g~~~~~~i-~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~ 198 (430)
T d1qfma1 125 VALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDG---AKELPDVL-ERVKFSCMAWTH-DGKGMFYNAYPQQDGKSD 198 (430)
T ss_dssp EEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTT---TEEEEEEE-EEECSCCEEECT-TSSEEEEEECCCCSSCCS
T ss_pred ceecceEecC-CCCEEEEEeccccCchheeEEeccCc---ceeccccc-ccccccceEEcC-CCCEEEEEEeccccCccc
Confidence 3345678899 88877754 2333 599999998 44433211 112235688997 66766544322
Q ss_pred ---------CcEEEEEeecCce--eeeeecC--CCCeEEEEEcCCCCcEEEEEec--CCc--EEEEecCCCccce-----
Q psy6213 120 ---------GTMRLFDIRCQES--TKIFHSN--TESVRDVEFNPHSPYAFASVSE--NGT--IQQWDVRRPEKCF----- 177 (330)
Q Consensus 120 ---------~~i~i~d~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~--dg~--i~i~d~~~~~~~~----- 177 (330)
..|..+.+.+... ...+... ...+..+..+++++++++.... ++. +.+.|+.......
T Consensus 199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 278 (430)
T d1qfma1 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK 278 (430)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccc
Confidence 2577777765533 2333332 2346677889999976665442 333 4444554322111
Q ss_pred --eeeccCCCCeEEEEEcCCCCEEEEEe---cCCcEEEEeCCCCccc--cceec-cccceEEEEEcCCCCeEEEEeeccc
Q psy6213 178 --YQFTAHSGPIFACDWHPEHAWLATAS---RDKTIKVWDLSIKPSL--EYSIN-TIASVSRIKWRPQRKFHLASCSLVV 249 (330)
Q Consensus 178 --~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~ 249 (330)
...........-+. +.++.+++... .++.|...++...... ..... +...+..-.+...+.++++......
T Consensus 279 ~~~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~ 357 (430)
T d1qfma1 279 WVKLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV 357 (430)
T ss_dssp CEEEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred eeEeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCC
Confidence 11222222232222 22333333333 2356777777655321 22333 3333444344444455666655212
Q ss_pred CCeEEEEEccCCCccceEeecCCCCeEEEEEecCCC
Q psy6213 250 DSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQ 285 (330)
Q Consensus 250 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 285 (330)
-..|+++++.++.. ........+.+..+...++..
T Consensus 358 ~~~l~v~~~~~~~~-~~~~~~~~~sv~~~~~~~~~~ 392 (430)
T d1qfma1 358 KNTLQLHDLATGAL-LKIFPLEVGSVVGYSGQKKDT 392 (430)
T ss_dssp EEEEEEEETTTCCE-EEEECCCSSEEEEEECCTTCS
T ss_pred EeEEEEEECCCCcE-EEecCCCCceEeeccCCCCCC
Confidence 34688899887764 333333334555554444443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.20 E-value=0.28 Score=41.25 Aligned_cols=196 Identities=12% Similarity=0.089 Sum_probs=104.8
Q ss_pred CCCe-eecC-CCeEEEEEc-CCcceeeeeceeecccc----ccccceeeeeeccc---CCcEEEEEcCCCcEEEEECCCC
Q psy6213 15 DNGL-AQPS-RNVFKIFLI-KDTEFVETHNLRVGKNI----NLNFSCNDVAWSCI---EENHIATGATNGAVVVWNLGQI 84 (330)
Q Consensus 15 ~~~~-~~~g-d~~i~iw~~-~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~ 84 (330)
+|.+ ++++ ++.+...|. ++|+.+=.+........ ........+++.+. ...+++.++.|+.|.-.|.++
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~t- 140 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET- 140 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT-
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeecccc-
Confidence 4554 4444 677777776 56776655543321111 11111134555431 234788899999999999888
Q ss_pred CCCceeEEeccc---c-cceeE-EEEEecCCCEEEEEec------CCcEEEEEeecCceeeeeecCC-------------
Q psy6213 85 SRSKQERVFNDH---K-RTVNK-VSFHYVESNWLISGSQ------DGTMRLFDIRCQESTKIFHSNT------------- 140 (330)
Q Consensus 85 ~~~~~~~~~~~~---~-~~i~~-i~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~------------- 140 (330)
++....+... . ..++. -.+ -++.++.+.. .|.|+-+|+++++.+-.+....
T Consensus 141 --G~~~w~~~~~d~~~~~~~t~~P~v---~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~ 215 (596)
T d1w6sa_ 141 --GETVWKVENSDIKVGSTLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNI 215 (596)
T ss_dssp --CCEEEEEECCCGGGTCBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred --CceeccccccccccccccccCCcE---ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccc
Confidence 5555544321 1 11111 111 1344555543 4889999999999886654210
Q ss_pred ------------------------C-CeEEEEEcCCCCcEEEEEecC----------------CcEEEEecCCCccceee
Q psy6213 141 ------------------------E-SVRDVEFNPHSPYAFASVSEN----------------GTIQQWDVRRPEKCFYQ 179 (330)
Q Consensus 141 ------------------------~-~v~~~~~~~~~~~~~~~~~~d----------------g~i~i~d~~~~~~~~~~ 179 (330)
. .-..+++.+... ++..+..+ ..+.-.|++++ +..-.
T Consensus 216 ~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~-lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG-~~~W~ 293 (596)
T d1w6sa_ 216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG-EAKFG 293 (596)
T ss_dssp TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC-CEEEE
T ss_pred ccccccccccccccCCCCceecCCCccccccccccCCC-eeecccccccccccccccccccccccccccccccc-ccccc
Confidence 0 112345566655 44444322 33667788773 33333
Q ss_pred ecc--CC-------CCeEEEEE-cCCC---CEEEEEecCCcEEEEeCCCCcc
Q psy6213 180 FTA--HS-------GPIFACDW-HPEH---AWLATASRDKTIKVWDLSIKPS 218 (330)
Q Consensus 180 ~~~--~~-------~~i~~~~~-~~~~---~~l~~~~~dg~i~i~d~~~~~~ 218 (330)
++. |. ....-+.. ..+| +.++....+|.+.++|..+++.
T Consensus 294 ~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~ 345 (596)
T d1w6sa_ 294 YQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (596)
T ss_dssp EESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred ccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCce
Confidence 321 21 11222221 2234 3677788899999999988854
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.96 E-value=0.32 Score=40.68 Aligned_cols=80 Identities=6% Similarity=0.108 Sum_probs=44.9
Q ss_pred cEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCC-eEEEEEcCCCC-E
Q psy6213 121 TMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGP-IFACDWHPEHA-W 198 (330)
Q Consensus 121 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-i~~~~~~~~~~-~ 198 (330)
.+.-||+.+++.+-..+... +...-..+-.+. ++++|+.||.++.+|.++ ++.+-.+....+. -.-+.|..+|+ |
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagg-lVF~G~~dg~l~A~Da~T-Ge~LW~~~~~~~~~~~P~ty~~~GkQY 534 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGN-VVFQGTADGRLVAYHAAT-GEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (573)
T ss_dssp EEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTT-CCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cEEEeCCCCCceEeeecCCC-CCCCceEEEcCC-EEEEECCCCeEEEEECCC-CcEeEEEECCCCccccCEEEEECCEEE
Confidence 56777777777766655322 111111222344 688899999999999999 4555444422111 11144545776 4
Q ss_pred EEEEe
Q psy6213 199 LATAS 203 (330)
Q Consensus 199 l~~~~ 203 (330)
+++.+
T Consensus 535 v~v~~ 539 (573)
T d1kb0a2 535 VSVAV 539 (573)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44433
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.91 E-value=0.39 Score=40.26 Aligned_cols=80 Identities=10% Similarity=0.086 Sum_probs=41.6
Q ss_pred CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCC-CeEEEEEecCC
Q psy6213 206 KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKD-VVSGLAWRGDP 284 (330)
Q Consensus 206 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 284 (330)
|.+.-+|+.+++..-.. ....++..-..+-.+..++ .++ .||.++.+|.++++. +-.++-... .-.-+.|..+|
T Consensus 466 G~l~AiD~~TG~i~W~~-~~~~p~~~g~lstagglVF-~Gt--~dg~l~A~Da~TGe~-LW~~~~~~~~~~~P~ty~~~G 540 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEH-KEHLPLWAGVLATAGNLVF-TGT--GDGYFKAFDAKSGKE-LWKFQTGSGIVSPPITWEQDG 540 (582)
T ss_dssp EEEEEECTTTCCEEEEE-EESSCCCSCCEEETTTEEE-EEC--TTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETT
T ss_pred CeEEEEcCCCCcEEeec-CCCCCCccceeEEcCCeEE-EeC--CCCeEEEEECCCCcE-eEEEECCCCccccCEEEEECC
Confidence 44666666666433222 2222222112223455444 455 699999999999987 544443221 11125566788
Q ss_pred C-EEEEe
Q psy6213 285 Q-LFIAS 290 (330)
Q Consensus 285 ~-~l~s~ 290 (330)
+ +++..
T Consensus 541 ~qYv~i~ 547 (582)
T d1flga_ 541 EQYLGVT 547 (582)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5 44443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.63 E-value=0.51 Score=39.61 Aligned_cols=145 Identities=10% Similarity=-0.001 Sum_probs=79.6
Q ss_pred eecC-CCeEEEEEcCCcceeeeeceeeccccccccceee-eeecccCCcEEEEEcC------CCcEEEEECCCCCCCcee
Q psy6213 19 AQPS-RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCND-VAWSCIEENHIATGAT------NGAVVVWNLGQISRSKQE 90 (330)
Q Consensus 19 ~~~g-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~ 90 (330)
+... |+.|.-.|.++++..-.+........ ..++. -.+ -++.++++.. .|.|+-+|..+ ++.+
T Consensus 125 ~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~---~~~t~~P~v---~~~~vivg~~~~e~~~~G~v~A~Da~T---G~~~ 195 (596)
T d1w6sa_ 125 LKTQLDGNVAALNAETGETVWKVENSDIKVG---STLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKT---GEQV 195 (596)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECCCGGGT---CBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTT---CCEE
T ss_pred EEEeCCCCeEeeccccCceeccccccccccc---cccccCCcE---ECCeEEEeeccccccccCceEEEECCC---CcEE
Confidence 4455 99999999999987766543211111 00111 111 2345555543 47899999888 4444
Q ss_pred EEeccc-------------------------------------cc-ceeEEEEEecCCCEEEEEec--------------
Q psy6213 91 RVFNDH-------------------------------------KR-TVNKVSFHYVESNWLISGSQ-------------- 118 (330)
Q Consensus 91 ~~~~~~-------------------------------------~~-~i~~i~~~~~~~~~l~~~~~-------------- 118 (330)
-.+... .. .-..+++.+ ..+++..+..
T Consensus 196 W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~tg~~~p~~~~~r~g~n 274 (596)
T d1w6sa_ 196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTGNPAPWNETMRPGDN 274 (596)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEeeccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc-CCCeeecccccccccccccccccc
Confidence 332210 00 112345555 4555555432
Q ss_pred --CCcEEEEEeecCceeeeeecCC---------CCeEEEEE-cCCCC--cEEEEEecCCcEEEEecCCC
Q psy6213 119 --DGTMRLFDIRCQESTKIFHSNT---------ESVRDVEF-NPHSP--YAFASVSENGTIQQWDVRRP 173 (330)
Q Consensus 119 --d~~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~-~~~~~--~~~~~~~~dg~i~i~d~~~~ 173 (330)
...|...|+++++.+-.++... .....+.. ..+++ ..++....+|.++++|..++
T Consensus 275 ~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG 343 (596)
T d1w6sa_ 275 KWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG 343 (596)
T ss_dssp TTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCC
Confidence 2357788999998877665321 11111221 22332 35777888999999998874
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.5 Score=37.00 Aligned_cols=179 Identities=10% Similarity=0.097 Sum_probs=100.9
Q ss_pred cceeEEEEEecCCCEEEEEecCCcEEEEEeecC---------ceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEE
Q psy6213 98 RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQ---------ESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQW 168 (330)
Q Consensus 98 ~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~ 168 (330)
....-++.++ ...+++.|+.+ .+.+..++.- ......+..-..|..++|+.+. ++.. .++.+..+
T Consensus 37 ~~~~LLAVsn-~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d~---l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGDQ---VLVS-TRNALYSL 110 (381)
T ss_dssp SCCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETTE---EEEE-ESSEEEEE
T ss_pred cccceEEEeC-CCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCCE---EEEE-eCCCEEEE
Confidence 3456678885 67778877766 4677664311 0011111112358889997542 4333 45668888
Q ss_pred ecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccce-----eccccceEEEEEcCCCCeEEE
Q psy6213 169 DVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYS-----INTIASVSRIKWRPQRKFHLA 243 (330)
Q Consensus 169 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~ 243 (330)
+..... .......-..++.++.++|. .++....++.+.++++...+..... ..-.+.+.+++|++.|+.+++
T Consensus 111 ~~~~l~-~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~ 187 (381)
T d1xipa_ 111 DLEELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA 187 (381)
T ss_dssp ESSSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred Eeeccc-cccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence 877632 22333334567888888775 5667777899999999887432211 112356778888888877555
Q ss_pred EeecccCCeEEEE-EccCCCccceEeecCCCCeEEEEEecCCCEEEEe
Q psy6213 244 SCSLVVDSSVNVW-DIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIAS 290 (330)
Q Consensus 244 ~~~~~~~~~i~i~-d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 290 (330)
. . ++...+- ++..... +.........|.++.|-.+..++++-
T Consensus 188 ~-~---g~~~q~k~~i~~~~~-~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 188 W-R---NGEMEKQFEFSLPSE-LEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp E-E---TTEEEEEEEECCCHH-HHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred e-C---CCceeeccCCCCccc-cCCCcCCCcceeEEEEecCceEEEEE
Confidence 4 2 2322221 2222211 11111233467889998777666655
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.22 E-value=0.3 Score=34.49 Aligned_cols=210 Identities=11% Similarity=0.129 Sum_probs=107.5
Q ss_pred CeeecC--CCeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEE------EcCCCcEEEEECCCCCCCc
Q psy6213 17 GLAQPS--RNVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIAT------GATNGAVVVWNLGQISRSK 88 (330)
Q Consensus 17 ~~~~~g--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~------~~~dg~i~iw~~~~~~~~~ 88 (330)
+++..+ .|.+.++-+..++......-+.... ..+-..+ +++.. |-.-..+.+-++.. ..
T Consensus 27 ~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~---~~Pk~~l-------dfi~f~RDV~kGkE~Hai~~~Nlk~---~G 93 (313)
T d2hu7a1 27 KLLVVGFSEGSVNAYLYDGGETVKLNREPINSV---LDPHYGV-------GRVILVRDVSKGAEQHALFKVNTSR---PG 93 (313)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEECCSSCCSEE---CEECTTB-------SEEEEEEECSTTSCCEEEEEEETTS---TT
T ss_pred cEEEEEeccceEEEEEEeCCEEEEEecccccCc---CCCccCc-------ceEEEEeehhcCcceeeEEEEccCC---CC
Confidence 344444 9999999988877554322111100 0000111 11211 11223455556654 22
Q ss_pred eeEEecccc-cceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeec-CCCCeEEE--------EEcCCCCcEEEE
Q psy6213 89 QERVFNDHK-RTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHS-NTESVRDV--------EFNPHSPYAFAS 158 (330)
Q Consensus 89 ~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~--------~~~~~~~~~~~~ 158 (330)
....+.... -.|.++++. +.+..++|+......+|-++.++....... .-+.|+.+ .+-..++.-|++
T Consensus 94 EE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~ 171 (313)
T d2hu7a1 94 EEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFT 171 (313)
T ss_dssp CEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred eeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEE
Confidence 233333332 556677764 788999999988999999998875433221 11223333 222222212333
Q ss_pred Eec-CCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEec---CCcEEEEeCCCCccccceec-------ccc
Q psy6213 159 VSE-NGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASR---DKTIKVWDLSIKPSLEYSIN-------TIA 227 (330)
Q Consensus 159 ~~~-dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~-------~~~ 227 (330)
+.- .|.+++++. ..+.++...+.+..+. +++-. .....-+|++.++-.....+ ...
T Consensus 172 adl~SG~lri~tp------------keGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~ 238 (313)
T d2hu7a1 172 SNLSSGGLRVFDS------------GEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPT 238 (313)
T ss_dssp EETTTEEEEEECC------------SSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCS
T ss_pred EecccCCEEEecC------------CCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecce
Confidence 333 445555544 4455556666655544 33321 11222447776533222222 234
Q ss_pred ceEEEEEcCCCCeEEEEeecccCCeEEEEE
Q psy6213 228 SVSRIKWRPQRKFHLASCSLVVDSSVNVWD 257 (330)
Q Consensus 228 ~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d 257 (330)
.|+-+-+.|+++.++++- .||.-++|.
T Consensus 239 ~I~~~~Y~Pdd~L~iiak---rdG~s~lF~ 265 (313)
T d2hu7a1 239 AITWLGYLPDGRLAVVAR---REGRSAVFI 265 (313)
T ss_dssp EEEEEEECTTSCEEEEEE---ETTEEEEEE
T ss_pred EEEeeeeCCCCcEEEEEe---cCCchheee
Confidence 577777999999645554 499999986
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.10 E-value=0.76 Score=38.41 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=46.8
Q ss_pred CcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceecc-ccceEEEEEcCCCCeE
Q psy6213 163 GTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINT-IASVSRIKWRPQRKFH 241 (330)
Q Consensus 163 g~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 241 (330)
|.|.-+|+.++ +..-.... ..++.+-..+..+.++++|+.||.++-+|.++++.+-...-. ...-.-+.|..+|+..
T Consensus 466 G~l~AiD~~TG-~i~W~~~~-~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 466 GSLRAMDPVSG-KVVWEHKE-HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp EEEEEECTTTC-CEEEEEEE-SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CeEEEEcCCCC-cEEeecCC-CCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 56777888874 33333322 122222223346778888999999999999999765443321 1111225666788654
Q ss_pred EE
Q psy6213 242 LA 243 (330)
Q Consensus 242 ~~ 243 (330)
++
T Consensus 544 v~ 545 (582)
T d1flga_ 544 LG 545 (582)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.44 Score=35.37 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=28.4
Q ss_pred CeEEEEEcCCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC---------CcEEEEECCC
Q psy6213 24 NVFKIFLIKDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN---------GAVVVWNLGQ 83 (330)
Q Consensus 24 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~ 83 (330)
..+.+||+++++.......+.... . .+++.. ++.+++.|+.. ..+.+||..+
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~-~-----~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 79 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRS-G-----LAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 79 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCB-S-----CEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred ceEEEEECCCCeEEECCCCCCccc-e-----eEEEEE--CCEEEEEeCcccCCCCccccchhhhccccc
Confidence 467899999977655433332111 1 122222 56666666531 3567788765
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.45 Score=35.31 Aligned_cols=49 Identities=8% Similarity=0.071 Sum_probs=24.0
Q ss_pred CeEEEEEccCCCccceEeecC-CCCe-EEEEEecCCCEEEEeecCCe-----Eeeeecc
Q psy6213 251 SSVNVWDIRRPYIPLASFTEH-KDVV-SGLAWRGDPQLFIASSRVSI-----IPRAKNI 302 (330)
Q Consensus 251 ~~i~i~d~~~~~~~~~~~~~~-~~~v-~~~~~~~~~~~l~s~~~dg~-----i~iw~~~ 302 (330)
.....+|..+... ..+... .... .+++. .++++++.|+.++. +.+|+..
T Consensus 211 ~~~~~~~~~~~~~--~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~ 266 (288)
T d1zgka1 211 NSVERYDVETETW--TFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPD 266 (288)
T ss_dssp CCEEEEETTTTEE--EECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred cceeeeeecceee--ecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECC
Confidence 3566777765542 222111 1111 12222 36788888876653 4455544
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.76 E-value=0.94 Score=37.75 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=30.8
Q ss_pred cEEEEEeecCceeeeeecCC---------CCeEEEEEcCCC--CcEEEEEecCCcEEEEecCCCc
Q psy6213 121 TMRLFDIRCQESTKIFHSNT---------ESVRDVEFNPHS--PYAFASVSENGTIQQWDVRRPE 174 (330)
Q Consensus 121 ~i~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~--~~~~~~~~~dg~i~i~d~~~~~ 174 (330)
.|.-.|+++++..-.++... .+........++ ...++.++.+|.++++|..+++
T Consensus 284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe 348 (573)
T d1kb0a2 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (573)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccc
Confidence 46666777777665544311 111222222222 2357778889999999988743
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.53 E-value=0.48 Score=33.45 Aligned_cols=222 Identities=10% Similarity=0.082 Sum_probs=113.6
Q ss_pred CCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEec-CCCEEEEEe------cCCcEEEEEeecCceeee
Q psy6213 63 EENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYV-ESNWLISGS------QDGTMRLFDIRCQESTKI 135 (330)
Q Consensus 63 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~l~~~~------~d~~i~i~d~~~~~~~~~ 135 (330)
+.++++++...|.+.++-+.. .+.... .+.+|.... .|. .-..+.-+- .-..|++-++...-....
T Consensus 25 ~d~ll~~~~seG~vni~~l~g---~~~vkL---tkePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~ 97 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDG---GETVKL---NREPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQR 97 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESS---SSCEEC---CSSCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEE
T ss_pred CCcEEEEEeccceEEEEEEeC---CEEEEE---ecccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeE
Confidence 566888888899999998876 333222 233443322 221 111221111 112233333332122233
Q ss_pred eecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc-eeeecc-------CCCCeEEEEE-cCCCCEEEEEec-C
Q psy6213 136 FHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC-FYQFTA-------HSGPIFACDW-HPEHAWLATASR-D 205 (330)
Q Consensus 136 ~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~-~~~~~~-------~~~~i~~~~~-~~~~~~l~~~~~-d 205 (330)
+.. ..+++-+...-+++.+.++|+......+|-++.++-. +..+.+ ...-|..+.+ .+...-++++.. .
T Consensus 98 i~s-pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~S 176 (313)
T d2hu7a1 98 LEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS 176 (313)
T ss_dssp CTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred ecC-CceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEeccc
Confidence 332 2334444444556668889988888888888763211 111111 1122333332 222233444444 5
Q ss_pred CcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeec------CCCCeEEEE
Q psy6213 206 KTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTE------HKDVVSGLA 279 (330)
Q Consensus 206 g~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~------~~~~v~~~~ 279 (330)
|.+++++... +.++.....++.+. ++.-....+....-+|+++++-....+.. ..-.|.-+-
T Consensus 177 G~lri~tpke-----------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~ 244 (313)
T d2hu7a1 177 GGLRVFDSGE-----------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLG 244 (313)
T ss_dssp EEEEEECCSS-----------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEE
T ss_pred CCEEEecCCC-----------CcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeee
Confidence 6666665443 46777777777763 22221111223334577765421111111 123566777
Q ss_pred EecCCCEEEEeecCCeEeeeeccce
Q psy6213 280 WRGDPQLFIASSRVSIIPRAKNIKI 304 (330)
Q Consensus 280 ~~~~~~~l~s~~~dg~i~iw~~~~~ 304 (330)
+.|++++++.+-.||.=++|-+-+.
T Consensus 245 Y~Pdd~L~iiakrdG~s~lF~nGk~ 269 (313)
T d2hu7a1 245 YLPDGRLAVVARREGRSAVFIDGER 269 (313)
T ss_dssp ECTTSCEEEEEEETTEEEEEETTEE
T ss_pred eCCCCcEEEEEecCCchheeecceE
Confidence 9999999899999999888864443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.36 E-value=1.5 Score=35.10 Aligned_cols=110 Identities=10% Similarity=0.116 Sum_probs=64.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccc--------eeccccceEEEEEcCC---CCeEEEEeeccc--
Q psy6213 183 HSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEY--------SINTIASVSRIKWRPQ---RKFHLASCSLVV-- 249 (330)
Q Consensus 183 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~v~~~~~~~~---~~~l~~~~~~~~-- 249 (330)
.-....+|+|.|++++|++--..|.|++++..++..... ..........++|+|+ ..++.++.+...
T Consensus 25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~ 104 (450)
T d1crua_ 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (450)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence 345678999999999888775679999998777633111 1122456789999996 344444322000
Q ss_pred ------CC--eEEEEEccCCCcc-------ceEee-cCCCCeEEEEEecCCCEEEEeec
Q psy6213 250 ------DS--SVNVWDIRRPYIP-------LASFT-EHKDVVSGLAWRGDPQLFIASSR 292 (330)
Q Consensus 250 ------~~--~i~i~d~~~~~~~-------~~~~~-~~~~~v~~~~~~~~~~~l~s~~~ 292 (330)
.+ .+..+........ +.... .....-..|.|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 11 2333443332211 11111 11134578999999988777764
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=92.83 E-value=1.3 Score=32.71 Aligned_cols=182 Identities=9% Similarity=-0.011 Sum_probs=88.3
Q ss_pred ccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccc
Q psy6213 97 KRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKC 176 (330)
Q Consensus 97 ~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~ 176 (330)
...|..++- .....+.-. ||.|..|-.+..-++..-......+..++.- ..+.++ -.||.+..|......+.
T Consensus 25 ~~~i~~va~---G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~a--l~dg~v~~wG~~~~gq~ 96 (273)
T d1jtdb_ 25 QSGVDAIAG---GYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLA--LKDGEVIAWGGNEDGQT 96 (273)
T ss_dssp SSSEEEEEE---CSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEEE--EETTEEEEEECCTTSTT
T ss_pred CCCcEEEEc---cCCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC--CCceee--eeeeeeeccCCCcceee
Confidence 355777764 333444444 8999999876544333222233445555432 222233 24899999986543322
Q ss_pred eeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeCCCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEE
Q psy6213 177 FYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDLSIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVW 256 (330)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~ 256 (330)
... ......+..++.... ..+ .-.|+.+..|.................+..++-.. . .++... ++.++.|
T Consensus 97 ~~~-~~~~~~~~~i~~~~~--~~~-~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~~~~---~g~~~~~ 166 (273)
T d1jtdb_ 97 TVP-AEARSGVDAIAAGAW--ASY-ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--Y-TALAVK---NGGVIAW 166 (273)
T ss_dssp CCC-GGGGSSCCEEEEETT--EEE-EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--S-EEEEEE---TTEEEEE
T ss_pred ccc-cccccceeEEeeecc--ccc-ccccccceecccCCCCceeeeccCCceEEEEeccc--e-eeeeec---ccceeEe
Confidence 111 111233444444322 222 22478888887544433222222334454444322 2 233333 7778888
Q ss_pred EccCCCccceEeecCCCCeEEEEEecCCCEEEEeecCCeEeeee
Q psy6213 257 DIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRVSIIPRAK 300 (330)
Q Consensus 257 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iw~ 300 (330)
-...... ..........|..++.... ..+.-. ||.|+-|-
T Consensus 167 G~~~~g~-~~~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG 206 (273)
T d1jtdb_ 167 GDNYFGQ-TTVPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWG 206 (273)
T ss_dssp ECCTTST-TSCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEE
T ss_pred ecccCCc-ccccccccCCccceeccce--eeEEEe-cCcEEEcC
Confidence 6554332 2222223445766665332 222222 77888774
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=92.58 E-value=1.4 Score=32.49 Aligned_cols=220 Identities=13% Similarity=0.058 Sum_probs=110.1
Q ss_pred eeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEecccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCcee
Q psy6213 54 CNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVFNDHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQEST 133 (330)
Q Consensus 54 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 133 (330)
|..++-. ....++-. ||.|..|-.....+ +..-......+..+.. .....+.- .|+.+..|.....-..
T Consensus 28 i~~va~G---~~h~~al~-dG~v~~wG~N~~GQ---lG~~~~~~~~v~~v~~---G~~~~~al-~dg~v~~wG~~~~gq~ 96 (273)
T d1jtdb_ 28 VDAIAGG---YFHGLALK-GGKVLGWGANLNGQ---LTMPAATQSGVDAIAA---GNYHSLAL-KDGEVIAWGGNEDGQT 96 (273)
T ss_dssp EEEEEEC---SSEEEEEE-TTEEEEEECCTTST---TSCCGGGGSCCCEEEE---CSSEEEEE-ETTEEEEEECCTTSTT
T ss_pred cEEEEcc---CCEEEEEE-CCEEEEEeCCCCCc---eeeeecccccceEEec---CCCceeee-eeeeeeccCCCcceee
Confidence 4555543 33333334 89999998765322 1111223345555553 23333322 4899999986533222
Q ss_pred eeeecCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeeeccCCCCeEEEEEcCCCCEEEEEecCCcEEEEeC
Q psy6213 134 KIFHSNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQFTAHSGPIFACDWHPEHAWLATASRDKTIKVWDL 213 (330)
Q Consensus 134 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 213 (330)
.........+..++..... .+ .-.|+.+..|.......... .......|..++-. .. ......++.+..|..
T Consensus 97 ~~~~~~~~~~~~i~~~~~~---~~-~~~dg~v~~~g~~~~~~~~~-~~~~~~~v~~~~~~--~~-~~~~~~~g~~~~~G~ 168 (273)
T d1jtdb_ 97 TVPAEARSGVDAIAAGAWA---SY-ALKDGKVIAWGDDSDGQTTV-PAEAQSGVTALDGG--VY-TALAVKNGGVIAWGD 168 (273)
T ss_dssp CCCGGGGSSCCEEEEETTE---EE-EEETTEEEEEECCTTSTTSC-CGGGGSSEEEEEEC--SS-EEEEEETTEEEEEEC
T ss_pred ccccccccceeEEeeeccc---cc-ccccccceecccCCCCceee-eccCCceEEEEecc--ce-eeeeecccceeEeec
Confidence 1111122334444433322 22 23588999997554222111 11122344444432 22 233345788999976
Q ss_pred CCCccccceeccccceEEEEEcCCCCeEEEEeecccCCeEEEEEccCCCccceEeecCCCCeEEEEEecCCCEEEEeecC
Q psy6213 214 SIKPSLEYSINTIASVSRIKWRPQRKFHLASCSLVVDSSVNVWDIRRPYIPLASFTEHKDVVSGLAWRGDPQLFIASSRV 293 (330)
Q Consensus 214 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 293 (330)
...............|..++.... +.++ -. ||.|+-|=.....+ +.........|..++-.. ...++. .|
T Consensus 169 ~~~g~~~~~~~~~~~v~~Is~G~~--h~~~-l~---dG~v~~WG~n~~Gq-l~~~~~~~~~v~~I~~G~-~~~~~l--~~ 238 (273)
T d1jtdb_ 169 NYFGQTTVPAEAQSGVDDVAGGIF--HSLA-LK---DGKVIAWGDNRYKQ-TTVPTEALSGVSAIASGE-WYSLAL--KN 238 (273)
T ss_dssp CTTSTTSCCGGGSSSEEEEEECSS--EEEE-EE---TTEEEEEECCTTST-TCCCGGGGSSCCEEEECS-SCEEEE--ET
T ss_pred ccCCcccccccccCCccceeccce--eeEE-Ee---cCcEEEcCCCCCCc-cCCCccCCCCcEEEEeCc-ceEEEE--EC
Confidence 554444333444567777765433 2233 33 79999996543322 222222234577776543 333433 48
Q ss_pred CeEeeeecc
Q psy6213 294 SIIPRAKNI 302 (330)
Q Consensus 294 g~i~iw~~~ 302 (330)
|.|..|-..
T Consensus 239 g~v~~WG~~ 247 (273)
T d1jtdb_ 239 GKVIAWGSS 247 (273)
T ss_dssp TEEEEESTT
T ss_pred CEEEEECCC
Confidence 999999543
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=86.80 E-value=5.9 Score=31.03 Aligned_cols=151 Identities=8% Similarity=0.026 Sum_probs=79.6
Q ss_pred ceeeeeecccCCcEEEEEcCCCcEEEEECCCCCCCceeEEe-------cccccceeEEEEEecCCCEEEEEecC----Cc
Q psy6213 53 SCNDVAWSCIEENHIATGATNGAVVVWNLGQISRSKQERVF-------NDHKRTVNKVSFHYVESNWLISGSQD----GT 121 (330)
Q Consensus 53 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~~l~~~~~d----~~ 121 (330)
.+.+|+++|.+.++++++...|-|.. .... ++.-..+ ......+.+|+++|.+.+.+..+..+ ..
T Consensus 13 ~~~~i~~~P~~~~~~ya~~~~gGv~~--S~dg--G~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~ 88 (427)
T d2ebsa1 13 YITGIVAHPKTKDLLYARTDIGGAYR--WDAG--TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 88 (427)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEE--EETT--TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEE--EECC--CCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcC
Confidence 36899999988888888887665533 2221 2222222 12234688999999766777665432 11
Q ss_pred EEEEEee-cCceeeeee---------cCCCCeEEEEEcCCCCcEEEEEecCCcEEEEecCCCccceeee------ccCCC
Q psy6213 122 MRLFDIR-CQESTKIFH---------SNTESVRDVEFNPHSPYAFASVSENGTIQQWDVRRPEKCFYQF------TAHSG 185 (330)
Q Consensus 122 i~i~d~~-~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~ 185 (330)
..+|--. .++.=..+. ........+.++|.++..+.++..++.|. -....++.-... .....
T Consensus 89 ~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~--~S~D~G~tW~~~~~~~~~~~~~~ 166 (427)
T d2ebsa1 89 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW--KSSDRAKTWTNVTSIPDAFTNGI 166 (427)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEE--EESSTTSSCEECTTSSCCCCSSS
T ss_pred ccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccccccccee--eecCCCceeeecccCcccccCCc
Confidence 2344332 232211111 01133567889998776677776665543 222223222211 11233
Q ss_pred CeEEEEEcCCC-CEE-EEEecCCcEE
Q psy6213 186 PIFACDWHPEH-AWL-ATASRDKTIK 209 (330)
Q Consensus 186 ~i~~~~~~~~~-~~l-~~~~~dg~i~ 209 (330)
.+..+.++|.. ..+ +.+...+.|.
T Consensus 167 ~~~~i~~~p~~~~~~y~~~~~~~giy 192 (427)
T d2ebsa1 167 GYTSVIFDPERNGTIYASATAPQGMY 192 (427)
T ss_dssp CEEEEEECTTSTTCEEEEESSTTCEE
T ss_pred cceEEEecccccceeeeeeeecccce
Confidence 47788998843 333 3343333443
|
| >d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase family: Oligoxyloglucan reducing end-specific cellobiohydrolase domain: Oligoxyloglucan reducing end-specific cellobiohydrolase species: Yeast (Geotrichum sp. M128) [TaxId: 203496]
Probab=83.16 E-value=8.8 Score=29.95 Aligned_cols=158 Identities=6% Similarity=-0.052 Sum_probs=79.6
Q ss_pred cccceEEEEeeCCCe-eecC--CCeEEEEEc-CCcceeeeeceeeccccccccceeeeeecccCCcEEEEEcCC----Cc
Q psy6213 4 LSPVHKHGLKADNGL-AQPS--RNVFKIFLI-KDTEFVETHNLRVGKNINLNFSCNDVAWSCIEENHIATGATN----GA 75 (330)
Q Consensus 4 ~~~v~~~~~s~~~~~-~~~g--d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~ 75 (330)
.+.|.+|+++|...- +.++ .|-| |.. +.++--..+.-...........+.+|+++|.+.+.+..+..+ ..
T Consensus 11 gg~~~~i~~~P~~~~~~ya~~~~gGv--~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~ 88 (427)
T d2ebsa1 11 GGYITGIVAHPKTKDLLYARTDIGGA--YRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 88 (427)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCE--EEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCE--EEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcC
Confidence 467899999997655 4444 4544 433 333332222111111111123468899999666777665432 12
Q ss_pred EEEEECCCCCCCceeEEec---------ccccceeEEEEEecCCCEEEEEecCCcEEEEEeecCceeeee------ecCC
Q psy6213 76 VVVWNLGQISRSKQERVFN---------DHKRTVNKVSFHYVESNWLISGSQDGTMRLFDIRCQESTKIF------HSNT 140 (330)
Q Consensus 76 i~iw~~~~~~~~~~~~~~~---------~~~~~i~~i~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------~~~~ 140 (330)
..+|.-... ++.-..+. ........+.++|.+.+.+..++.++-|.. ..+.++.-... ....
T Consensus 89 ~gi~~S~Dg--G~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~~~~~~~~~ 165 (427)
T d2ebsa1 89 AAFYVSEDR--GQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNG 165 (427)
T ss_dssp CEEEEESST--TSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTTSSCCCCSS
T ss_pred ccEEEeCCC--CccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeecccCcccccCC
Confidence 345544332 22211111 011335678899977788877776655432 22333322211 1122
Q ss_pred CCeEEEEEcCCCCcEEEE-EecCCcEE
Q psy6213 141 ESVRDVEFNPHSPYAFAS-VSENGTIQ 166 (330)
Q Consensus 141 ~~v~~~~~~~~~~~~~~~-~~~dg~i~ 166 (330)
..+..+.++|..+..+.+ +...+.|+
T Consensus 166 ~~~~~i~~~p~~~~~~y~~~~~~~giy 192 (427)
T d2ebsa1 166 IGYTSVIFDPERNGTIYASATAPQGMY 192 (427)
T ss_dssp SCEEEEEECTTSTTCEEEEESSTTCEE
T ss_pred ccceEEEecccccceeeeeeeecccce
Confidence 347889999876654544 33333343
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