Psyllid ID: psy6218

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530---
Protein Sequence
MAFNVLRDKSFYTHGGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPFLSSRNRREDVDMIGESQPLRKQTSVQDKIRLGRQSNPRPSTYKASEVSLSTKFKLGLWSPAIELFFLCPQDFAWASTWASSCGRNFSVSPLSISQRQGPRPTPFQMRGPYSREGRRLSTGLCMGLYLGVLLRPKFLSLAALHFSTPRPAADPVSDAEAILPRGEETQGQTDGWSSSAGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPATQGQTDGWSSSGGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEVSITSLYFF
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHccccccccccccccccccEEEEHHHHHHHcccHHHHHHHHcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHccccccHHHHHHcccccccHHHHcccccccccccccccccccccccccccccccccccccccEEHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHcccHHHHcccccccHHHHHHHHHHHHcccccccccEEccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccHEcccccccHHHHcccccccccccccccccEEEcHHHHHHHcccHHHHHHHHHccccccEEcHHHHHHcccccEEEHHHHHHHHHHHcccccccccHHHEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccEccccEEccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHccccccccccccHHHHHcccccccccccccccccccccEEEEEcHHcccccEEEEEEEEcccccccccHHHcccccccccccccccccccccccccccccHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHccHHEEccccEEEEHHHHHHHHccccccccEEEEccccccHHHccccccccccccccccccEEEcHHHHHHHccccHHccccccccHHHHHHHHHHHHcccEEEEEEEHcEcEEEccc
Coil and Loop (DISEMBL)
mafnvlrdksfythggrgnqeefGLLSleydenfcmggpgvIMSRATLALVAPHIKYCLKNLytthedvelgrcvqkfagipflssrnrredvdmigesqplrkqtsvqdkirlgrqsnprpstykasevSLSTKfklglwspaiELFFLCPQDFAWAStwasscgrnfsvsplsisqrqgprptpfqmrgpysregrrlsTGLCMGLYLGVLLRPKFLSLAAlhfstprpaadpvsdaeailprgeetqgqtdgwsssagekgrgisdvglsesGLLFVGVMTANsylntratsvydtwardipatqgqtdgwsssggekgrgisdvglsesGLLFVGVMTANsylntratsvydtwardipgrvafftsesstlpaarpdlplvklrgvddsyppqkkSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRsvdsskpqfigqagrgnqeefGLLSleydenfcmggpgvIMSRATLALVAPHIKYCLKNLytthedvelgrcvqkfagipctwsyevsitslyff
Flexible Loop (DISEMBL)
mafnvlrdksfythggrgnqEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFagipflssrnrredvdmigesqplrkqtsvqdkirlgrqsnprpstykasevslSTKFKLGLWSPAIELFFLCPQDFAWASTWASSCGRNFSVSplsisqrqgprptpfqmrgpysreGRRLSTGLCMGLYLGVLLRPKFLSLAALHFSTPRPAADPVSDAEAILPrgeetqgqtdgwsssagekGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPatqgqtdgwsssggEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFftsesstlpaarpdlplvklrgvddsyppqkksFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLrsvdsskpqfigqagrgnQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFagipctwsyevsitslyff
Low Complexity Region (SEG)
MAFNVLRDKSFYTHGGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPFLSSRNRREDVDMIGESQPLRKQTSVQDKIRLGRQSNPRPSTYKASEVSLSTKFKLGLWSPAIELFFLCPQDFAWASTWASSCGRNFSVSPLSISQRQGPRPTPFQMRGPYSREGRRLSTGLCMGLYLGVLLRPKFLSLAALHFSTPRPAADPVSDAEAILPRGEETQGQTDGWSSSAGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPATQGQTDGWSSSGGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEVSITSLYFF
Disordered region (IsUnstruct)
*********SFYTHGGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPFL***********************************************LSTKFKLGLWSPAIELFFLCPQDFAWASTWASSCGRNFS*****************************LSTGLCMGLYLGVLLRPKFLSLAALHF********************************************GLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPA*********************VGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTS***********LPLVKLRGVDDSY**QKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLR*****************QEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEVSITSLYF*
Disordered Region (DISOPRED)
***NVLRDKSFYTHGGRGNQEEFG*LSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPFLSSRNRREDVDM***********SVQDKIRLGRQSNPRPSTYKASEVSLSTKFKLGLWSPAIELFFLCPQDFAWASTWASSCGRNF***********************YSREGRRLSTGLCMGLYLGVLLRPKFLSLAALH**********************************************LSESGLLFVGVMTANSYLNTRATSVYDT*******************************SESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEVSITSLYFF
Disordered Region (DISEMBL)
MAFNVLRDKSFYTHGGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPFLSSRNRREDVDMIGESQPLRKQTSVQDKIRLGRQ*************SLSTKFKLGLWSPAIELFFLCPQDFAWASTWASSCGRNFSVSPL**********TPFQMRGPYSREGRRLSTGLCMGLYLGVLLRPKFLSLAALHFST********SDAEAILPR********************GISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPAT****************GISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEVSITSLYFF
Disordered Region (DISPRO)
*AFNVLRDKSFYTHGGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPFLSSRNRREDVDMIGESQPLRKQTSVQDKIRLGRQSNPRPSTYKASEVSLSTKFKLGLWSPAIELFFLCPQDFAWASTWASSCGRNFSVSPLSI***QGPRPTPFQ*********RRLSTGLCMGLYLGVLLRPKFLSLAALHFSTPRP*****S*A*************TDGWSSSAGEKGRGISDVGLSESGLLFVGVMTANSYLNTRAT**Y***************************ISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEVSITSLYFF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFNVLRDKSFYTHGGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPFLSSRNRREDVDMIGESQPLRKQTSVQDKIRLGRQSNPRPSTYKASEVSLSTKFKLGLWSPAIELFFLCPQDFAWASTWASSCGRNFSVSPLSISQRQGPRPTPFQMRGPYSREGRRLSTGLCMGLYLGVLLRPKFLSLAALHFSTPRPAADPVSDAEAILPRGEETQGQTDGWSSSAGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPATQGQTDGWSSSGGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEVSITSLYFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	533	2.2.26 [Sep-21-2011]
Q86X52	802	Chondroitin sulfate synth	yes	N/A	0.367	0.244	0.613	3e-70
Q6ZQ11	800	Chondroitin sulfate synth	yes	N/A	0.429	0.286	0.536	7e-70
Q5DTK1	884	Chondroitin sulfate synth	no	N/A	0.393	0.237	0.574	1e-66
Q70JA7	882	Chondroitin sulfate synth	no	N/A	0.395	0.239	0.556	4e-64
Q5F3G7	366	Glycoprotein-N-acetylgala	no	N/A	0.354	0.516	0.293	6e-12
Q9P2E5	772	Chondroitin sulfate glucu	no	N/A	0.322	0.222	0.276	5e-10
Q9NS00	363	Glycoprotein-N-acetylgala	no	N/A	0.332	0.487	0.283	9e-10
Q0VC84	368	Glycoprotein-N-acetylgala	no	N/A	0.345	0.5	0.278	9e-10
Q9JJ06	363	Glycoprotein-N-acetylgala	no	N/A	0.350	0.515	0.270	1e-09
Q18515	389	Glycoprotein-N-acetylgala	no	N/A	0.339	0.465	0.256	2e-09

>sp|Q86X52|CHSS1_HUMAN Chondroitin sulfate synthase 1 OS=Homo sapiens GN=CHSY1 PE=1 SV=3

 Score =  266 bits (679), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 150/199 (75%), Gaps = 3/199 (1%)

Query: 327 DVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLV 386
           D G  +   LFVGVMTA  YL TRA + Y TW++ IPG+V FF+SE S        +P+V
Sbjct: 78  DGGPRDRNFLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVQFFSSEGSDTSVP---IPVV 134

Query: 387 KLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQ 446
            LRGVDDSYPPQKKSF+ML+YM + Y DKYEWFMRADDD+Y++G+RL   LRS++SS+P 
Sbjct: 135 PLRGVDDSYPPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKGDRLENFLRSLNSSEPL 194

Query: 447 FIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVE 506
           F+GQ G G  EE G L+LE  ENFCMGGPGVIMSR  L  + PHI  CL+ +YTTHEDVE
Sbjct: 195 FLGQTGLGTTEEMGKLALEPGENFCMGGPGVIMSREVLRRMVPHIGKCLREMYTTHEDVE 254

Query: 507 LGRCVQKFAGIPCTWSYEV 525
           +GRCV++FAG+ C WSYE+
Sbjct: 255 VGRCVRRFAGVQCVWSYEM 273

Has both beta-1,3-glucuronic acid and beta-1,4-N-acetylgalactosamine transferase activity. Transfers glucuronic acid (GlcUA) from UDP-GlcUA and N-acetylgalactosamine (GalNAc) from UDP-GalNAc to the non-reducing end of the elongating chondroitin polymer. Involved in the negative control of osteogenesis likely through the modulation of NOTCH signaling.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 2EC: 6

>sp|Q6ZQ11|CHSS1_MOUSE Chondroitin sulfate synthase 1 OS=Mus musculus GN=Chsy1 PE=2 SV=2

 Score =  265 bits (677), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 133/248 (53%), Positives = 173/248 (69%), Gaps = 19/248 (7%)

Query: 292 RATSVYDTWARDIPATQGQTDGWSSS--GGEKG---------RGISDVGL-SESGLLFVG 339
           RA+ +     R  P+ +G   G  +S  GG +G         +G +  G+  +   LFVG
Sbjct: 30  RASELKRVGPRRRPSPEGCRPGQEASQPGGARGDARGAQLWPQGSAAEGVPRDRNFLFVG 89

Query: 340 VMTANSYLNTRATSVYDTWARDIPGRVAFFTSESS--TLPAARPDLPLVKLRGVDDSYPP 397
           VMTA  YL TRA + Y TW++ IPG+V FF+SE S  ++P     +P+V LRGVDDSYPP
Sbjct: 90  VMTAQKYLQTRAVAAYRTWSKTIPGKVEFFSSEGSDTSIP-----IPVVPLRGVDDSYPP 144

Query: 398 QKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQE 457
           QKKSF+ML+YM + Y DKYEWFMRADDD+Y++G+RL   LRS++SS+P F+GQ G G  E
Sbjct: 145 QKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKGDRLESFLRSLNSSEPLFLGQTGLGTTE 204

Query: 458 EFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGI 517
           E G L+LE  ENFCMGGPGVI+SR  L  +APHI  CL+ +YTTHEDVE+GRCV++FAG+
Sbjct: 205 EMGKLALEPGENFCMGGPGVILSREVLRRMAPHIGKCLREMYTTHEDVEVGRCVRRFAGV 264

Query: 518 PCTWSYEV 525
            C WSYE+
Sbjct: 265 QCVWSYEM 272

Has both beta-1,3-glucuronic acid and beta-1,4-N-acetylgalactosamine transferase activity. Transfers glucuronic acid (GlcUA) from UDP-GlcUA and N-acetylgalactosamine (GalNAc) from UDP-GalNAc to the non-reducing end of the elongating chondroitin polymer.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 6

>sp|Q5DTK1|CHSS3_MOUSE Chondroitin sulfate synthase 3 OS=Mus musculus GN=Chsy3 PE=1 SV=3

 Score =  254 bits (649), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/214 (57%), Positives = 153/214 (71%), Gaps = 4/214 (1%)

Query: 316 SSGGEKGRGISDVGLSESG-LLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSE-- 372
           SS    G G + V  S  G  L+VGVMTA  YL +RA +   TWAR IPGRV FF+S+  
Sbjct: 152 SSHNGSGDGGAAVPTSGPGDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQS 211

Query: 373 -SSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGE 431
            S+ L    P LP++ L GVDDSYPPQKKSF+M++YM + Y DKYEWFMRADDD+Y++G+
Sbjct: 212 PSAALGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDKYEWFMRADDDVYIKGD 271

Query: 432 RLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHI 491
           +L   LRS++SSKP ++GQ G GN EE G L LE  ENFCMGGPG+I SR  L  + PHI
Sbjct: 272 KLEEFLRSLNSSKPLYLGQTGLGNTEELGKLGLEPGENFCMGGPGMIFSREVLRRMVPHI 331

Query: 492 KYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEV 525
             CL+ +YTTHEDVE+GRCV++F G  C WSYE+
Sbjct: 332 GECLREMYTTHEDVEVGRCVRRFGGTQCVWSYEM 365

Has both beta-1,3-glucuronic acid and beta-1,4-N-acetylgalactosamine transferase activity. Transfers glucuronic acid (GlcUA) from UDP-GlcUA and N-acetylgalactosamine (GalNAc) from UDP-GalNAc to the non-reducing end of the elongating chondroitin polymer. Specific activity is much reduced compared to CHSY1.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 6

>sp|Q70JA7|CHSS3_HUMAN Chondroitin sulfate synthase 3 OS=Homo sapiens GN=CHSY3 PE=2 SV=3

 Score =  246 bits (627), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/212 (55%), Positives = 147/212 (69%), Gaps = 1/212 (0%)

Query: 315 SSSGGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESS 374
           SS  G    G +         L+VGVMTA  YL +RA +   TWAR IPGRV FF+S+  
Sbjct: 152 SSHNGSGDGGAAAPSARPRDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQP 211

Query: 375 TLPAARPD-LPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERL 433
                 P  LP++ L GVDDSYPPQKKSF+M++YM + Y DKYEWFMRADDD+Y++G++L
Sbjct: 212 PNAGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDKYEWFMRADDDVYIKGDKL 271

Query: 434 ARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKY 493
              LRS++SSKP ++GQ G GN EE G L LE  ENFCMGGPG+I SR  L  + PHI  
Sbjct: 272 EEFLRSLNSSKPLYLGQTGLGNIEELGKLGLEPGENFCMGGPGMIFSREVLRRMVPHIGE 331

Query: 494 CLKNLYTTHEDVELGRCVQKFAGIPCTWSYEV 525
           CL+ +YTTHEDVE+GRCV++F G  C WSYE+
Sbjct: 332 CLREMYTTHEDVEVGRCVRRFGGTQCVWSYEM 363

Has both beta-1,3-glucuronic acid and beta-1,4-N-acetylgalactosamine transferase activity. Transfers glucuronic acid (GlcUA) from UDP-GlcUA and N-acetylgalactosamine (GalNAc) from UDP-GalNAc to the non-reducing end of the elongating chondroitin polymer. Specific activity is much reduced compared to CHSY1.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 6

>sp|Q5F3G7|C1GLT_CHICK Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Gallus gallus GN=C1GALT1 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 26/215 (12%)

Query: 303 DIPATQGQTDGWSSSGG--EKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWAR 360
           D    QGQ +  + SG   ++ R I+D GL E   +   VMT    L  +A  V  TWA+
Sbjct: 56  DNNQLQGQMNFNADSGQHRDENRNIAD-GLYEKVKILCWVMTGPQNLEKKARHVKATWAQ 114

Query: 361 DIPGRVAFFTSESSTLPAARPDLPLVKLR---GVDDSYPPQKKSFLMLQYMWERYGDKYE 417
               ++ F +SE +       D P V L    G D  Y    K+F   QY+++ Y D  +
Sbjct: 115 RC-NKILFMSSEENK------DFPTVGLETKEGRDQLYWKTIKAF---QYVYDHYFDDAD 164

Query: 418 WFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGV 477
           WFM+ADDD YV  + L  +L      +P + G+  +   ++ G +S         GG G 
Sbjct: 165 WFMKADDDTYVILDNLRWLLSKYSPEQPIYFGRRFKPYVKQ-GYMS---------GGAGY 214

Query: 478 IMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQ 512
           ++S+  L       K    +  ++ ED+ LG+C++
Sbjct: 215 VLSKEALKRFVTAFKTNKCSHSSSIEDLALGKCME 249

Glycosyltransferase that generates the core 1 O-glycan Gal-beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q9P2E5|CHPF2_HUMAN Chondroitin sulfate glucuronyltransferase OS=Homo sapiens GN=CHPF2 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 20/192 (10%)

Query: 336 LFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSY 395
           L V V+T+ + L+T A +V  T A   P R+ +FT +      A   + +V       S+
Sbjct: 102 LLVAVLTSRATLSTLAVAVNRTVAHHFP-RLLYFTGQRGARAPA--GMQVV-------SH 151

Query: 396 PPQKKSFLM---LQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAG 452
             ++ ++LM   L+++   +G  Y+WF    DD YV+  RLA +   +  ++  ++G+A 
Sbjct: 152 GDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGRA- 210

Query: 453 RGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQ 512
               EEF  +       +C GG G ++SR+ L  + PH+  C  ++ +   D  LGRC+ 
Sbjct: 211 ----EEF--IGAGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLI 264

Query: 513 KFAGIPCTWSYE 524
              G+ C   ++
Sbjct: 265 DSLGVGCVSQHQ 276

Transfers glucuronic acid (GlcUA) from UDP-GlcUA to N-acetylgalactosamine residues on the non-reducing end of the elongating chondroitin polymer. Has no N-acetylgalactosaminyltransferase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: 2

EC: 6

>sp|Q9NS00|C1GLT_HUMAN Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Homo sapiens GN=C1GALT1 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 24/201 (11%)

Query: 315 SSSGGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESS 374
           SS   ++   I++  L +   +   VMT    L  +A  V  TWA+    +V F +SE +
Sbjct: 69  SSQHKDENTDIAE-NLYQKVRILCWVMTGPQNLEKKAKHVKATWAQRC-NKVLFMSSEEN 126

Query: 375 TLPAARPDLPLVKLR---GVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGE 431
                  D P V L+   G D  Y    K+F   QY+ E Y +  +WF++ADDD YV  +
Sbjct: 127 K------DFPAVGLKTKEGRDQLYWKTIKAF---QYVHEHYLEDADWFLKADDDTYVILD 177

Query: 432 RLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHI 491
            L  +L   D  +P + G+  +   ++ G +S         GG G ++S+  L       
Sbjct: 178 NLRWLLSKYDPEEPIYFGRRFKPYVKQ-GYMS---------GGAGYVLSKEALKRFVDAF 227

Query: 492 KYCLKNLYTTHEDVELGRCVQ 512
           K       ++ ED+ LGRC++
Sbjct: 228 KTDKCTHSSSIEDLALGRCME 248

Glycosyltransferase that generates the core 1 O-glycan Gal-beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins. Plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q0VC84|C1GLT_BOVIN Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Bos taurus GN=C1GALT1 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 24/208 (11%)

Query: 308 QGQTDGWSSSGGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVA 367
           Q   D  +S   ++   I+D  L +   +   VMT    L  +A  V  TWA+    +V 
Sbjct: 62  QMNFDADASQHKDENTDIAD-KLYQKVKILCWVMTGPQNLEKKAKHVKATWAQRC-NKVL 119

Query: 368 FFTSESSTLPAARPDLPLVKLR---GVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADD 424
           F +SE +       D P V L+   G D  Y    K+F   QY+ + Y +  +WFM+ADD
Sbjct: 120 FMSSEENK------DFPAVGLKTREGRDQLYWKTIKAF---QYVHDHYLEDADWFMKADD 170

Query: 425 DLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATL 484
           D YV  + L  +L   +  +P + G+  +   ++ G +S         GG G ++S+  L
Sbjct: 171 DTYVILDNLRWLLSKYNPEEPIYFGRRFKPYVKQ-GYMS---------GGAGYVLSKEAL 220

Query: 485 ALVAPHIKYCLKNLYTTHEDVELGRCVQ 512
                  K       ++ ED+ LGRC++
Sbjct: 221 KRFVEAFKTDKCTHSSSIEDLALGRCME 248

Glycosyltransferase that generates the core 1 O-glycan Gal-beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins. Plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q9JJ06|C1GLT_MOUSE Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Mus musculus GN=C1galt1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 20/207 (9%)

Query: 308 QGQTDGWSSSGGEKGRGISDVG--LSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGR 365
           +GQ +  + S   K   I DV   L +   +   VMT+   L  +A  V  TWA+    +
Sbjct: 60  KGQMNFNADSSQHKDENI-DVAENLYQKVKILCWVMTSPQNLEKKAKHVKATWAQRC-NK 117

Query: 366 VAFFTSESSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDD 425
           V F +SE +       D P V L+  +       K+    QY+ + Y +  +WFM+ADDD
Sbjct: 118 VLFMSSEENQ------DFPTVGLKTKEGREQLYWKTIKAFQYVHDHYLEDADWFMKADDD 171

Query: 426 LYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLA 485
            YV  + L  +L   +  +P + G+  +   ++ G +S         GG G ++S+  L 
Sbjct: 172 TYVIVDNLRWLLSKYNPEQPIYFGRRFKPYVKQ-GYMS---------GGAGYVLSKEALR 221

Query: 486 LVAPHIKYCLKNLYTTHEDVELGRCVQ 512
                 K       ++ ED+ LGRC++
Sbjct: 222 RFVNAFKTEKCTHSSSIEDLALGRCME 248

Glycosyltransferase that generates the core 1 O-glycan Gal-beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins. Plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 2

>sp|Q18515|C1GLT_CAEEL Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Caenorhabditis elegans GN=C38H2.2 PE=2 SV=2

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 22/203 (10%)

Query: 315 SSSGGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESS 374
           +SS    G  +    +++   +F  ++T     + RA  V  TWA+     V   + E +
Sbjct: 85  NSSHSHDGESLIADEVAKKVRVFCWILTGKQNHDKRAKHVKATWAKRCNKYVFMSSEEDA 144

Query: 375 TLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLA 434
            LPA    + L    G D  +   K +F   +Y+++ + + Y+WF++ADDD YV  E L 
Sbjct: 145 ELPA----INLNVSEGRDYLWAKTKGAF---KYIYDHHLNDYDWFLKADDDTYVVMENLR 197

Query: 435 RMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLA----LVAPH 490
            ML +    +P   G   +   +            +  GG G ++SR  L     +  P 
Sbjct: 198 FMLLAHSPDEPIHFGCKFKPFTQ----------GGYHSGGAGYVLSREALKKFIEVALPD 247

Query: 491 IKYCLKNLYTTHEDVELGRCVQK 513
              C +N +   ED E+G+C++K
Sbjct: 248 KSLCSQN-HGGAEDAEMGKCLEK 269

Glycosyltransferase that generates the core 1 O-glycan Gal-beta1-3GalNAc-alpha1-Ser/Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	533
242006641	816	Chondroitin sulfate synthase, putative [	0.377	0.246	0.702	1e-87
307190582	816	Chondroitin sulfate synthase 1 [Camponot	0.467	0.305	0.578	3e-86
380017407	820	PREDICTED: chondroitin sulfate synthase	0.371	0.241	0.696	8e-85
328779572	820	PREDICTED: chondroitin sulfate synthase	0.371	0.241	0.696	9e-85
332022007	816	Chondroitin sulfate synthase 1 [Acromyrm	0.371	0.242	0.707	1e-84
340723393	819	PREDICTED: chondroitin sulfate synthase	0.371	0.241	0.696	1e-84
350406030	819	PREDICTED: chondroitin sulfate synthase	0.371	0.241	0.696	2e-84
307191856	815	Chondroitin sulfate synthase 1 [Harpegna	0.371	0.242	0.696	3e-84
322801914	393	hypothetical protein SINV_04128 [Solenop	0.371	0.503	0.691	6e-83
345489612	674	PREDICTED: LOW QUALITY PROTEIN: chondroi	0.360	0.284	0.717	7e-83

>gi|242006641|ref|XP_002424157.1| Chondroitin sulfate synthase, putative [Pediculus humanus corporis] gi|212507482|gb|EEB11419.1| Chondroitin sulfate synthase, putative [Pediculus humanus corporis]

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 142/202 (70%), Positives = 178/202 (88%), Gaps = 1/202 (0%)

Query: 330 LSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLR 389
           +++  L+FVGVMTA  YL++RA +V++TW R++PG++AFF+SE+ST+P+ R DLPLV+L+
Sbjct: 49  MNQDNLVFVGVMTAQKYLSSRAVAVFETWGRELPGKIAFFSSETSTVPSHRKDLPLVRLK 108

Query: 390 GVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIG 449
            VDDSYPPQKKSF+ML+YMWE YGD++EWF+RADDD+Y+R ++L   LRS+DS KP FIG
Sbjct: 109 NVDDSYPPQKKSFMMLRYMWENYGDRFEWFIRADDDVYIRPDKLETFLRSMDSRKPLFIG 168

Query: 450 QAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGR 509
           QAGRGNQEEFGLLSLEYDENFCMGGPG+I+SR TL  VAPHI++CLKNLYTTHEDVELGR
Sbjct: 169 QAGRGNQEEFGLLSLEYDENFCMGGPGIILSRETLKRVAPHIRHCLKNLYTTHEDVELGR 228

Query: 510 CVQKFAGIPCTWSYEVSITSLY 531
           CV+KFA + CTWSYE+  T LY
Sbjct: 229 CVRKFADVSCTWSYEMQ-TILY 249

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190582|gb|EFN74564.1| Chondroitin sulfate synthase 1 [Camponotus floridanus]

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 159/275 (57%), Positives = 198/275 (72%), Gaps = 26/275 (9%)

Query: 263 KGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPATQGQTDGWSSSGGEKG 322
           K RG+    L     LFVG++     L+ R T           + Q Q   W+S  G + 
Sbjct: 12  KRRGVGSAFLG----LFVGLILGFLILSYRLTV----------SNQQQLTIWTSMPGLRS 57

Query: 323 ------RGI------SDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFT 370
                 R I        +  S S LLFVGVMTA  YL+TRA +VY+TW +++PG++AFF+
Sbjct: 58  PPKASVRNIPRLKDDERINSSTSNLLFVGVMTAQKYLDTRAKAVYETWGKELPGKIAFFS 117

Query: 371 SESSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRG 430
           SESST+P   PDLPLV L  VDD+YPPQKKSF+ML+YMW  +GD++EWF+RADDD+YVR 
Sbjct: 118 SESSTVPENCPDLPLVPLPRVDDTYPPQKKSFMMLEYMWSNFGDRFEWFLRADDDVYVRT 177

Query: 431 ERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPH 490
           +RL ++LRSVDS +  +IGQAGRGN EEFGLLSLEYDENFCMGGPGV++SR TLA + PH
Sbjct: 178 DRLEKLLRSVDSRRAMYIGQAGRGNSEEFGLLSLEYDENFCMGGPGVVLSRETLARIVPH 237

Query: 491 IKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEV 525
           IKYCL++LYTTHEDVELGRCV+K+AGIPCTWSYE+
Sbjct: 238 IKYCLRHLYTTHEDVELGRCVKKYAGIPCTWSYEM 272

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017407|ref|XP_003692648.1| PREDICTED: chondroitin sulfate synthase 1-like [Apis florea]

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 138/198 (69%), Positives = 173/198 (87%)

Query: 328 VGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVK 387
           +  S + L+FVGVMTA+ YL++RA +VY+TW +++PG++AFF+SE+S +P   PDLPLV 
Sbjct: 78  INSSSTSLVFVGVMTASKYLDSRAKAVYETWGKELPGKIAFFSSENSVVPNNCPDLPLVA 137

Query: 388 LRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQF 447
           L  VDD+YPPQKKSF+MLQYMW  YGD++EWF+RADDD+YVR +RL ++LRSV+S++  +
Sbjct: 138 LPRVDDTYPPQKKSFMMLQYMWNNYGDRFEWFLRADDDVYVRTDRLEQLLRSVNSNRAMY 197

Query: 448 IGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVEL 507
           IGQAGRGN EEFGLLSLEYDENFCMGGPGVI+SR TL  + PHIKYCL++LYTTHEDVEL
Sbjct: 198 IGQAGRGNSEEFGLLSLEYDENFCMGGPGVILSRETLRRIVPHIKYCLRHLYTTHEDVEL 257

Query: 508 GRCVQKFAGIPCTWSYEV 525
           GRCVQK+AGIPCTWSYE+
Sbjct: 258 GRCVQKYAGIPCTWSYEM 275

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779572|ref|XP_396991.4| PREDICTED: chondroitin sulfate synthase 1-like isoform 1 [Apis mellifera]

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 138/198 (69%), Positives = 173/198 (87%)

Query: 328 VGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVK 387
           +  S + L+FVGVMTA+ YL++RA +VY+TW +++PG++AFF+SE+S +P   PDLPLV 
Sbjct: 78  INSSSTSLVFVGVMTASKYLDSRAKAVYETWGKELPGKIAFFSSENSVVPNNCPDLPLVA 137

Query: 388 LRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQF 447
           L  VDD+YPPQKKSF+MLQYMW  YGD++EWF+RADDD+YVR +RL ++LRSV+S++  +
Sbjct: 138 LPRVDDTYPPQKKSFMMLQYMWNNYGDRFEWFLRADDDVYVRTDRLEQLLRSVNSNRAMY 197

Query: 448 IGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVEL 507
           IGQAGRGN EEFGLLSLEYDENFCMGGPGVI+SR TL  + PHIKYCL++LYTTHEDVEL
Sbjct: 198 IGQAGRGNSEEFGLLSLEYDENFCMGGPGVILSRETLRRIVPHIKYCLRHLYTTHEDVEL 257

Query: 508 GRCVQKFAGIPCTWSYEV 525
           GRCVQK+AGIPCTWSYE+
Sbjct: 258 GRCVQKYAGIPCTWSYEM 275

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022007|gb|EGI62333.1| Chondroitin sulfate synthase 1 [Acromyrmex echinatior]

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 140/198 (70%), Positives = 171/198 (86%)

Query: 328 VGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVK 387
           +  S S L+FVGVMTA  YL+TRA +VY+TW +++PG++AFF+SESST+P   PDLPLV 
Sbjct: 76  IDKSTSNLVFVGVMTAQKYLDTRAKAVYETWGKELPGKIAFFSSESSTVPENCPDLPLVP 135

Query: 388 LRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQF 447
           L  VDD+YPPQKKSF+MLQYMW  +GD++EWF+RADDD+YVR +RL  +LRSVDS +  +
Sbjct: 136 LPRVDDTYPPQKKSFMMLQYMWNNFGDRFEWFLRADDDVYVRPDRLETLLRSVDSRRAMY 195

Query: 448 IGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVEL 507
           IGQAGRGN EEFGLLSLEYDENFCMGGPGV++SR TL  + PHIKYCL++LYTTHEDVEL
Sbjct: 196 IGQAGRGNSEEFGLLSLEYDENFCMGGPGVVLSRETLRRIVPHIKYCLRHLYTTHEDVEL 255

Query: 508 GRCVQKFAGIPCTWSYEV 525
           GRCV+K+AGIPCTWSYE+
Sbjct: 256 GRCVKKYAGIPCTWSYEM 273

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723393|ref|XP_003400074.1| PREDICTED: chondroitin sulfate synthase 1-like isoform 1 [Bombus terrestris] gi|340723395|ref|XP_003400075.1| PREDICTED: chondroitin sulfate synthase 1-like isoform 2 [Bombus terrestris]

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 138/198 (69%), Positives = 171/198 (86%)

Query: 328 VGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVK 387
           +  S + L+FVGVMTA  YL++RA +VY+TW +++PG++AFF+SE+S +P   PDLPLV 
Sbjct: 77  INSSSTSLVFVGVMTAGKYLDSRAKAVYETWGKELPGKIAFFSSENSVVPDNCPDLPLVA 136

Query: 388 LRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQF 447
           L  VDD+YPPQKKSF+MLQYMW  YGD++EWF+RADDD+YVR +RL ++LRSV+S +  +
Sbjct: 137 LPRVDDTYPPQKKSFMMLQYMWNNYGDRFEWFLRADDDVYVRTDRLEKLLRSVNSKRAMY 196

Query: 448 IGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVEL 507
           IGQAGRGN EEFGLLSLEYDENFCMGGPGVI+SR TL  + PHIKYCL++LYTTHEDVEL
Sbjct: 197 IGQAGRGNSEEFGLLSLEYDENFCMGGPGVILSRETLRRIVPHIKYCLRHLYTTHEDVEL 256

Query: 508 GRCVQKFAGIPCTWSYEV 525
           GRCVQK+AGIPCTWSYE+
Sbjct: 257 GRCVQKYAGIPCTWSYEM 274

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406030|ref|XP_003487632.1| PREDICTED: chondroitin sulfate synthase 1-like [Bombus impatiens]

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 138/198 (69%), Positives = 171/198 (86%)

Query: 328 VGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVK 387
           +  S + L+FVGVMTA  YL++RA +VY+TW +++PG++AFF+SE+S +P   PDLPLV 
Sbjct: 77  INSSSTSLVFVGVMTAGKYLDSRAKAVYETWGKELPGKIAFFSSENSVVPGNCPDLPLVP 136

Query: 388 LRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQF 447
           L  VDD+YPPQKKSF+MLQYMW  YGD++EWF+RADDD+YVR +RL ++LRSV+S +  +
Sbjct: 137 LPRVDDTYPPQKKSFMMLQYMWNNYGDRFEWFLRADDDVYVRTDRLEKLLRSVNSKRAMY 196

Query: 448 IGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVEL 507
           IGQAGRGN EEFGLLSLEYDENFCMGGPGVI+SR TL  + PHIKYCL++LYTTHEDVEL
Sbjct: 197 IGQAGRGNSEEFGLLSLEYDENFCMGGPGVILSRETLRRIVPHIKYCLRHLYTTHEDVEL 256

Query: 508 GRCVQKFAGIPCTWSYEV 525
           GRCVQK+AGIPCTWSYE+
Sbjct: 257 GRCVQKYAGIPCTWSYEM 274

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191856|gb|EFN75280.1| Chondroitin sulfate synthase 1 [Harpegnathos saltator]

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 138/198 (69%), Positives = 172/198 (86%)

Query: 328 VGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVK 387
           +  S S L+FVGVMTA  YL+TRA +VY+TW +++PG++AFF+SESST+P   P+LPLV 
Sbjct: 75  INSSTSSLVFVGVMTAQKYLDTRAKAVYETWGKELPGKIAFFSSESSTVPDNCPELPLVP 134

Query: 388 LRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQF 447
           L  VDD+YPPQKKSF+MLQYMW  +GD++EWF+RADDD+YVR +RL ++LRSVDS +  +
Sbjct: 135 LPRVDDTYPPQKKSFMMLQYMWSNFGDRFEWFLRADDDVYVRTDRLEKLLRSVDSRRAMY 194

Query: 448 IGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVEL 507
           IGQAGRGN EEFGLLSL+YDENFCMGGPGV++SR TL  + PHIKYCL++LYTTHEDVEL
Sbjct: 195 IGQAGRGNSEEFGLLSLDYDENFCMGGPGVVLSRETLRRIVPHIKYCLRHLYTTHEDVEL 254

Query: 508 GRCVQKFAGIPCTWSYEV 525
           GRCV+K+AGIPCTWSYE+
Sbjct: 255 GRCVKKYAGIPCTWSYEM 272

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801914|gb|EFZ22467.1| hypothetical protein SINV_04128 [Solenopsis invicta]

 Score =  314 bits (805), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 137/198 (69%), Positives = 170/198 (85%)

Query: 328 VGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVK 387
           +  S S L+FVGVMTA  YL+TRA +VY+TW +++PG++ FF+SESST+P   PDLPLV 
Sbjct: 77  INSSTSNLVFVGVMTAQKYLDTRAKAVYETWGKELPGKIVFFSSESSTVPENCPDLPLVP 136

Query: 388 LRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQF 447
           L  VDD+YPPQKKSF+MLQYMW  +GD++EWF+RADDD+YVR +RL  +LRSVDS +  +
Sbjct: 137 LPRVDDTYPPQKKSFMMLQYMWSNFGDRFEWFLRADDDVYVRTDRLETLLRSVDSRRAMY 196

Query: 448 IGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVEL 507
           IGQAGRGN EEFGLLSL+YDENFCMGGPGV++SR TL  + PHI+YCL++LYTTHEDVEL
Sbjct: 197 IGQAGRGNSEEFGLLSLDYDENFCMGGPGVVLSRETLRRIVPHIRYCLRHLYTTHEDVEL 256

Query: 508 GRCVQKFAGIPCTWSYEV 525
           GRCV+K+AGIPCTWSYE+
Sbjct: 257 GRCVKKYAGIPCTWSYEM 274

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489612|ref|XP_003426180.1| PREDICTED: LOW QUALITY PROTEIN: chondroitin sulfate synthase 3-like [Nasonia vitripennis]

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 140/195 (71%), Positives = 165/195 (84%)

Query: 331 SESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRG 390
           S  GLL+VGVMTA  YL TRA +VY++W  ++PG++ F++SE S  P  RPDLPL+ L  
Sbjct: 63  SGQGLLYVGVMTARKYLGTRAKAVYESWGSEVPGQIGFYSSEGSRPPEERPDLPLLALPR 122

Query: 391 VDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQ 450
           VDDSYPPQKKSFLMLQ+MW  YG+++EWF+RADDDLYVR +RL ++LRSVDS KP++IGQ
Sbjct: 123 VDDSYPPQKKSFLMLQHMWTAYGERFEWFLRADDDLYVRMDRLEKLLRSVDSRKPEYIGQ 182

Query: 451 AGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRC 510
           AGRGN EEFGLLSLEYDENFCMGGPGVI SR TL  + PHIK+CL NLYTTHEDVELGRC
Sbjct: 183 AGRGNSEEFGLLSLEYDENFCMGGPGVIFSRETLRRIVPHIKHCLANLYTTHEDVELGRC 242

Query: 511 VQKFAGIPCTWSYEV 525
           V+KFAGI CTWSYE+
Sbjct: 243 VRKFAGISCTWSYEM 257

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	533
FB|FBgn0030662	832	CG9220 [Drosophila melanogaste	0.358	0.229	0.692	1.8e-76
UNIPROTKB|E2QWQ7	802	CHSY1 "Uncharacterized protein	0.401	0.266	0.581	8.2e-67
MGI|MGI:2681120	800	Chsy1 "chondroitin sulfate syn	0.459	0.306	0.530	1.1e-66
UNIPROTKB|Q86X52	802	CHSY1 "Chondroitin sulfate syn	0.459	0.305	0.524	2.8e-66
RGD|1311904	799	Chsy1 "chondroitin sulfate syn	0.459	0.306	0.530	3.6e-66
MGI|MGI:1926173	884	Chsy3 "chondroitin sulfate syn	0.405	0.244	0.554	2e-65
RGD|1560819	886	Chsy3 "chondroitin sulfate syn	0.407	0.244	0.547	2.6e-65
UNIPROTKB|F6PU96	803	CHSY1 "Uncharacterized protein	0.358	0.237	0.613	1.8e-64
UNIPROTKB|F1NT01	331	CHSY3 "Uncharacterized protein	0.401	0.646	0.560	4.7e-64
WB|WBGene00005023	734	sqv-5 [Caenorhabditis elegans	0.356	0.258	0.567	4.8e-64

FB|FBgn0030662 CG9220 [Drosophila melanogaster (taxid:7227)]

 Score = 743 (266.6 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
 Identities = 135/195 (69%), Positives = 163/195 (83%)

Query:   331 SESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRG 390
             S+  L+FVGVMTA S+L  RA +VYDTW +++PGR+AFF+SE S       DLP+V L+ 
Sbjct:    66 SQRNLVFVGVMTAKSFLEGRARAVYDTWGKEVPGRMAFFSSEGSY----SDDLPVVGLKN 121

Query:   391 VDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQ 450
             VDD YPPQKKSF+ML YM+E Y D++EWF+RADDD+Y+  ++L R LRS+DSSKPQFIGQ
Sbjct:   122 VDDRYPPQKKSFMMLYYMYEHYIDRFEWFIRADDDVYMEPDKLERFLRSIDSSKPQFIGQ 181

Query:   451 AGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRC 510
             AG+GN EEFGLLSLE+DENFCMGGPGVI+S  TL  VAPHI  CLKNLY+THEDVE+GRC
Sbjct:   182 AGKGNSEEFGLLSLEFDENFCMGGPGVILSSETLRRVAPHIPSCLKNLYSTHEDVEVGRC 241

Query:   511 VQKFAGIPCTWSYEV 525
             VQKFAGIPCTW+YE+
Sbjct:   242 VQKFAGIPCTWNYEM 256

GO:0008375 "acetylglucosaminyltransferase activity" evidence=NAS

GO:0015020 "glucuronosyltransferase activity" evidence=NAS

GO:0030206 "chondroitin sulfate biosynthetic process" evidence=NAS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

UNIPROTKB|E2QWQ7 CHSY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 132/227 (58%), Positives = 163/227 (71%)

Query:   309 GQTDGWSSSGGEKG--RGI--------SDVGLSESGLLFVGVMTANSYLNTRATSVYDTW 358
             GQ    S +GG +G  RG         SD G  +   LFVGVMTA  YL TRA + Y TW
Sbjct:    51 GQAAAASQAGGARGDARGAQLWPHGPASDGGPRDKNFLFVGVMTAQKYLQTRAVAAYRTW 110

Query:   359 ARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEW 418
             ++ IPG+V FF+SE S    + P +P+V LRGVDDSYPPQKKSF+ML+YM + Y DKYEW
Sbjct:   111 SKTIPGKVEFFSSEGSD--TSIP-IPIVPLRGVDDSYPPQKKSFMMLKYMHDHYLDKYEW 167

Query:   419 FMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVI 478
             FMRADDD+Y++G+RL   LRS++SS+P F+GQ G G  EE G L+LE  ENFCMGGPGVI
Sbjct:   168 FMRADDDVYIKGDRLENFLRSLNSSEPLFLGQTGLGTTEEMGKLALEPGENFCMGGPGVI 227

Query:   479 MSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEV 525
             MSR  L  + PHI  CL+ +YTTHEDVE+GRCV++FAG+ C WSYE+
Sbjct:   228 MSREVLRRMVPHIGKCLREMYTTHEDVEVGRCVRRFAGVQCVWSYEM 274

GO:0047238 "glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0030279 "negative regulation of ossification" evidence=IEA

GO:0030206 "chondroitin sulfate biosynthetic process" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

MGI|MGI:2681120 Chsy1 "chondroitin sulfate synthase 1" [Mus musculus (taxid:10090)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 138/260 (53%), Positives = 179/260 (68%)

Query:   278 LFVGVMTANSYLNTRATSVYDTWARDIPATQGQTDGWSSS--GGEKG--RGIS--DVGLS 331
             L +G + A+  +  RA+ +     R  P+ +G   G  +S  GG +G  RG      G +
Sbjct:    16 LVLGFVLASRLVLPRASELKRVGPRRRPSPEGCRPGQEASQPGGARGDARGAQLWPQGSA 75

Query:   332 ESGL------LFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPL 385
               G+      LFVGVMTA  YL TRA + Y TW++ IPG+V FF+SE S    + P +P+
Sbjct:    76 AEGVPRDRNFLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVEFFSSEGSD--TSIP-IPV 132

Query:   386 VKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKP 445
             V LRGVDDSYPPQKKSF+ML+YM + Y DKYEWFMRADDD+Y++G+RL   LRS++SS+P
Sbjct:   133 VPLRGVDDSYPPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKGDRLESFLRSLNSSEP 192

Query:   446 QFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDV 505
              F+GQ G G  EE G L+LE  ENFCMGGPGVI+SR  L  +APHI  CL+ +YTTHEDV
Sbjct:   193 LFLGQTGLGTTEEMGKLALEPGENFCMGGPGVILSREVLRRMAPHIGKCLREMYTTHEDV 252

Query:   506 ELGRCVQKFAGIPCTWSYEV 525
             E+GRCV++FAG+ C WSYE+
Sbjct:   253 EVGRCVRRFAGVQCVWSYEM 272

GO:0005576 "extracellular region" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=IEA

GO:0030206 "chondroitin sulfate biosynthetic process" evidence=ISO

GO:0030279 "negative regulation of ossification" evidence=ISO

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0047238 "glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity" evidence=ISO

GO:0050510 "N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity" evidence=IEA

UNIPROTKB|Q86X52 CHSY1 "Chondroitin sulfate synthase 1" [Homo sapiens (taxid:9606)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 137/261 (52%), Positives = 175/261 (67%)

Query:   278 LFVGVMTANSYLNTRATSVYDTWARDIPATQGQTDGW---SSSGGEKG--RGIS------ 326
             L +G + A+  +  RA+ +     R   + +G   G    S +GG +G  RG        
Sbjct:    16 LVLGFVLASRLVLPRASELKRAGPRRRASPEGCRSGQAAASQAGGARGDARGAQLWPPGS 75

Query:   327 --DVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLP 384
               D G  +   LFVGVMTA  YL TRA + Y TW++ IPG+V FF+SE S      P +P
Sbjct:    76 DPDGGPRDRNFLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVQFFSSEGSDTSV--P-IP 132

Query:   385 LVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSK 444
             +V LRGVDDSYPPQKKSF+ML+YM + Y DKYEWFMRADDD+Y++G+RL   LRS++SS+
Sbjct:   133 VVPLRGVDDSYPPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKGDRLENFLRSLNSSE 192

Query:   445 PQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHED 504
             P F+GQ G G  EE G L+LE  ENFCMGGPGVIMSR  L  + PHI  CL+ +YTTHED
Sbjct:   193 PLFLGQTGLGTTEEMGKLALEPGENFCMGGPGVIMSREVLRRMVPHIGKCLREMYTTHED 252

Query:   505 VELGRCVQKFAGIPCTWSYEV 525
             VE+GRCV++FAG+ C WSYE+
Sbjct:   253 VEVGRCVRRFAGVQCVWSYEM 273

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050510 "N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity" evidence=IEA

GO:0031667 "response to nutrient levels" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0030279 "negative regulation of ossification" evidence=IMP

GO:0030206 "chondroitin sulfate biosynthetic process" evidence=IDA;TAS

GO:0047238 "glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity" evidence=IDA

GO:0000139 "Golgi membrane" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0030203 "glycosaminoglycan metabolic process" evidence=TAS

GO:0030204 "chondroitin sulfate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

RGD|1311904 Chsy1 "chondroitin sulfate synthase 1" [Rattus norvegicus (taxid:10116)]

 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 138/260 (53%), Positives = 178/260 (68%)

Query:   278 LFVGVMTANSYLNTRATSVYDTWARDIPATQGQTDGWSSS--GGEKG--RGIS--DVGLS 331
             L +G + A+  +  RA+ +     R  P  +G   G ++S  GG  G  RG      G +
Sbjct:    16 LVLGFVLASRLVLPRASELKRVGPRRRPNPEGCRPGQAASQPGGAPGDARGAQLWPQGSA 75

Query:   332 ESGL------LFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPL 385
               G+      LFVGVMTA  YL TRA + Y TW++ IPG+V FF+SE S    + P +P+
Sbjct:    76 AEGVPRDRNFLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVEFFSSEGSD--TSIP-IPV 132

Query:   386 VKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKP 445
             V LRGVDDSYPPQKKSF+ML+YM + Y DKYEWFMRADDD+Y++G+RL   LRS++SS+P
Sbjct:   133 VPLRGVDDSYPPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKGDRLESFLRSLNSSEP 192

Query:   446 QFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDV 505
              F+GQ G G  EE G L+LE  ENFCMGGPGVI+SR  L  +APHI  CL+ +YTTHEDV
Sbjct:   193 LFLGQTGLGTTEEMGKLALEPGENFCMGGPGVILSREVLRRMAPHIGKCLREMYTTHEDV 252

Query:   506 ELGRCVQKFAGIPCTWSYEV 525
             E+GRCV++FAG+ C WSYE+
Sbjct:   253 EVGRCVRRFAGVQCVWSYEM 272

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA;ISO

GO:0030206 "chondroitin sulfate biosynthetic process" evidence=IEA;ISO

GO:0030279 "negative regulation of ossification" evidence=IEA;ISO

GO:0031667 "response to nutrient levels" evidence=IEP

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0047238 "glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity" evidence=IEA;ISO

MGI|MGI:1926173 Chsy3 "chondroitin sulfate synthase 3" [Mus musculus (taxid:10090)]

 Score = 647 (232.8 bits), Expect = 2.0e-65, Sum P(2) = 2.0e-65
 Identities = 123/222 (55%), Positives = 157/222 (70%)

Query:   308 QGQTDGWSSSG-GEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRV 366
             +G   G S +G G+ G  +   G  +   L+VGVMTA  YL +RA +   TWAR IPGRV
Sbjct:   146 KGGRPGSSHNGSGDGGAAVPTSGPGD--FLYVGVMTAQKYLGSRALAAQRTWARFIPGRV 203

Query:   367 AFFTSE---SSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRAD 423
              FF+S+   S+ L    P LP++ L GVDDSYPPQKKSF+M++YM + Y DKYEWFMRAD
Sbjct:   204 EFFSSQQSPSAALGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDKYEWFMRAD 263

Query:   424 DDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRAT 483
             DD+Y++G++L   LRS++SSKP ++GQ G GN EE G L LE  ENFCMGGPG+I SR  
Sbjct:   264 DDVYIKGDKLEEFLRSLNSSKPLYLGQTGLGNTEELGKLGLEPGENFCMGGPGMIFSREV 323

Query:   484 LALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEV 525
             L  + PHI  CL+ +YTTHEDVE+GRCV++F G  C WSYE+
Sbjct:   324 LRRMVPHIGECLREMYTTHEDVEVGRCVRRFGGTQCVWSYEM 365

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0047238 "glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0050510 "N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity" evidence=IEA

RGD|1560819 Chsy3 "chondroitin sulfate synthase 3" [Rattus norvegicus (taxid:10116)]

 Score = 646 (232.5 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
 Identities = 122/223 (54%), Positives = 153/223 (68%)

Query:   309 GQTDGWSSSGGEKGRGISDVGLSESG---LLFVGVMTANSYLNTRATSVYDTWARDIPGR 365
             G   G      + G G        SG    L+VGVMTA  YL +RA + + TWAR IPGR
Sbjct:   143 GPRKGGRPRSSQNGSGDGGAAAPTSGPGDFLYVGVMTAQKYLGSRALAAHRTWARFIPGR 202

Query:   366 VAFFTSE---SSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRA 422
             V FF+S+   S+ L    P LP++ L GVDDSYPPQKKSF+M++YM + Y DKYEWFMRA
Sbjct:   203 VEFFSSQQPPSAALGQPPPPLPVIALPGVDDSYPPQKKSFMMIKYMHDHYLDKYEWFMRA 262

Query:   423 DDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRA 482
             DDD+Y++G++L   LRS++SSKP ++GQ G GN EE G L LE  ENFCMGGPG+I SR 
Sbjct:   263 DDDVYIKGDKLEEFLRSLNSSKPLYLGQTGLGNTEELGKLGLEPGENFCMGGPGMIFSRE 322

Query:   483 TLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEV 525
              L  + PHI  CL+ +YTTHEDVE+GRCV++F G  C WSYE+
Sbjct:   323 VLRRMVPHIGECLREMYTTHEDVEVGRCVRRFGGTQCVWSYEM 365

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

UNIPROTKB|F6PU96 CHSY1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 119/194 (61%), Positives = 149/194 (76%)

Query:   332 ESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGV 391
             +   LFVGVMTA  YL TRA + + TW++ IPG+V FF+SE S    +   +P+V LRGV
Sbjct:    84 DRNFLFVGVMTAQKYLQTRAVAAFRTWSKTIPGKVEFFSSEGSDTSIS---IPVVPLRGV 140

Query:   392 DDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQA 451
             DDSYPPQKKSF+ML+YM + Y DKYEWFMRADDD+Y++G+RL   LRS++SS+P F+GQ 
Sbjct:   141 DDSYPPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKGDRLESFLRSLNSSEPLFLGQT 200

Query:   452 GRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCV 511
             G G  EE G L+LE  ENFCMGGPGVIMSR  L  + PHI  CL+ +YTTHEDVE+GRCV
Sbjct:   201 GLGTTEEMGKLALEPGENFCMGGPGVIMSREVLRRMVPHIGKCLREMYTTHEDVEVGRCV 260

Query:   512 QKFAGIPCTWSYEV 525
             ++FAG+ C WSYE+
Sbjct:   261 RRFAGVQCVWSYEM 274

GO:0047238 "glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0030279 "negative regulation of ossification" evidence=IEA

GO:0030206 "chondroitin sulfate biosynthetic process" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

UNIPROTKB|F1NT01 CHSY3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 121/216 (56%), Positives = 152/216 (70%)

Query:   309 GQTDGWSSSGGEKGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAF 368
             G+  G  +  G+ G G +      +  L+VGVMTA  YL +RA +   TWA  +PGRV F
Sbjct:   118 GRPGGSRNGSGDWG-GAAGCAKPRN-FLYVGVMTAQKYLGSRAVAAQRTWAPSVPGRVEF 175

Query:   369 FTSESSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYV 428
             F+S+ S  P   P LP+V L GVDDSYPPQKKSF+M++YM + Y DKYEWFMRADDD+Y+
Sbjct:   176 FSSQGSAAPPGLPPLPVVALPGVDDSYPPQKKSFMMIKYMHDHYLDKYEWFMRADDDVYI 235

Query:   429 RGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVA 488
             +GE+L   LRS++SSKP ++GQ G GN EE G L LE  ENFCMGGPG+I SR  L  + 
Sbjct:   236 KGEKLEEFLRSLNSSKPLYLGQTGLGNIEELGKLGLEPGENFCMGGPGMIFSREVLRRMV 295

Query:   489 PHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYE 524
             PHI  CL+ +YTTHEDVE+GRCV++F G  C WSYE
Sbjct:   296 PHIGECLREMYTTHEDVEVGRCVRRFGGTQCVWSYE 331

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

WB|WBGene00005023 sqv-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 627 (225.8 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
 Identities = 109/192 (56%), Positives = 150/192 (78%)

Query:   334 GLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDD 393
             GL+ V +MTA  Y++TRA +V+ TWA+ IPGRV  F +E +   +   D+PL++L+GVDD
Sbjct:    80 GLILVAIMTAAKYVDTRAYNVWKTWAQHIPGRVLIFVAEGTE--SVHEDMPLIRLKGVDD 137

Query:   394 SYPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGR 453
             +YPPQKKSF M++++ E   D+Y+WF+RADDDLY+RGE LA  LRSVDSSK   IGQAG 
Sbjct:   138 TYPPQKKSFAMVKWLAENMADEYDWFLRADDDLYIRGEELALFLRSVDSSKAHIIGQAGL 197

Query:   454 GNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQK 513
             GN  E+GLL+L   +N+CMGGPG++MSR TL  V+PH++ CL+++ T+HEDVELGRC++K
Sbjct:   198 GNSAEYGLLALGSTDNYCMGGPGIVMSRDTLLKVSPHLESCLQHMLTSHEDVELGRCIRK 257

Query:   514 FAGIPCTWSYEV 525
               G+ CTW+YE+
Sbjct:   258 HVGVACTWNYEM 269

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040025 "vulval development" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0019899 "enzyme binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6ZQ11	CHSS1_MOUSE	2, ., 4, ., 1, ., 2, 2, 6	0.5362	0.4296	0.2862	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	533
pfam05679	504	pfam05679, CHGN, Chondroitin N-acetylgalactosaminy	2e-13
pfam02434	248	pfam02434, Fringe, Fringe-like	2e-10
pfam05679	504	pfam05679, CHGN, Chondroitin N-acetylgalactosaminy	7e-09

>gnl|CDD|218687 pfam05679, CHGN, Chondroitin N-acetylgalactosaminyltransferase

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 25/35 (71%), Positives = 29/35 (82%)

Query: 490 HIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYE 524
           H+  CL+N  + HEDVELGRCVQKFAGI CTWSY+
Sbjct: 1   HLDSCLRNALSAHEDVELGRCVQKFAGIGCTWSYQ 35

Length = 504

>gnl|CDD|190308 pfam02434, Fringe, Fringe-like

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 42/197 (21%), Positives = 68/197 (34%), Gaps = 14/197 (7%)

Query: 336 LFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFT-SESSTLPAARPDLPLVKLRGVDDS 394
           +F+ V T   +  TR   +  TW      +   FT  E   LP       +         
Sbjct: 6   IFIAVKTTKKFHKTRLPLLLKTWISRAKHQTYIFTDGEDEGLPTRTGGHLINT--NCSAG 63

Query: 395 YPPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQ-AGR 453
           +  +  S  M            +WF   DDD YV   RL R+L   + ++  ++G+ +  
Sbjct: 64  HCRKALSCKMAVEYDRFLESGKKWFCHVDDDNYVNVPRLVRLLSCYNHTQDVYLGKPSLY 123

Query: 454 GNQEEFGLLSLEYDE--NFCMGGPGVIMSRATLALVAPHIKYCLKNLYTT------HEDV 505
              E    +         F  GG G  +SR     ++P          +T       +D 
Sbjct: 124 RPIEATERVKNNRKVGFWFATGGAGFCISRGLALKMSPWASGG--RFMSTSEKIRLPDDC 181

Query: 506 ELGRCVQKFAGIPCTWS 522
            LG  ++   G+P T S
Sbjct: 182 TLGYIIENLLGVPLTHS 198

The drosophila protein fringe (FNG) is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands. FNG is localised to the Golgi apparatus (not secreted as previously thought). Modification of Notch occurs through glycosylation by FNG. The xenopus homologue, lunatic fringe, has been implicated in a variety of functions. Length = 248

>gnl|CDD|218687 pfam05679, CHGN, Chondroitin N-acetylgalactosaminyltransferase

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 20/29 (68%), Positives = 23/29 (79%)

Query: 54 HIKYCLKNLYTTHEDVELGRCVQKFAGIP 82
          H+  CL+N  + HEDVELGRCVQKFAGI 
Sbjct: 1  HLDSCLRNALSAHEDVELGRCVQKFAGIG 29

Length = 504

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	533
PF02434	252	Fringe: Fringe-like; InterPro: IPR003378 The Notch	99.96
KOG2246|consensus	364		99.96
PLN03133	636	beta-1,3-galactosyltransferase; Provisional	99.94
PLN03193	408	beta-1,3-galactosyltransferase; Provisional	99.93
KOG2287|consensus	349		99.92
PF01762	195	Galactosyl_T: Galactosyltransferase; InterPro: IPR	99.9
PLN03153	537	hypothetical protein; Provisional	99.88
KOG3708|consensus	681		99.76
KOG2288|consensus	274		99.75
PTZ00210	382	UDP-GlcNAc-dependent glycosyltransferase; Provisio	99.66
KOG3708|consensus	681		99.64
PF05679	499	CHGN: Chondroitin N-acetylgalactosaminyltransferas	99.26
PF02434	252	Fringe: Fringe-like; InterPro: IPR003378 The Notch	98.76
KOG3588|consensus	494		98.08
PLN03153	537	hypothetical protein; Provisional	97.42
PF04646	255	DUF604: Protein of unknown function, DUF604; Inter	97.05
KOG2246|consensus	364		94.5
PF04646	255	DUF604: Protein of unknown function, DUF604; Inter	92.97
PF13506	175	Glyco_transf_21: Glycosyl transferase family 21	91.79
PF01755	200	Glyco_transf_25: Glycosyltransferase family 25 (LP	90.88
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	88.32
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	82.61

>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []

Probab=99.96  E-value=1.3e-30  Score=261.29  Aligned_cols=188  Identities=28%  Similarity=0.455  Sum_probs=110.1

Q ss_pred             CCceEEEEEEcCCCChHHHHHHHHHhhhccCCCcEEE-EecCCCCCCCCCCCCCc-----EEecCCCCCCC-chHHHHHH
Q psy6218         332 ESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAF-FTSESSTLPAARPDLPL-----VKLRGVDDSYP-PQKKSFLM  404 (533)
Q Consensus       332 ~~~~LlI~V~Tsp~~~~tRr~AIR~TWgr~~~~rvvF-fsg~~~~i~~~d~~lpv-----V~L~~~dD~Yn-lt~Kt~~~  404 (533)
                      ...+|+|+|+|++++|++|+++|++||+++|+ ++.| |++.++      ++++.     +..++.++.+. .+.+.++.
T Consensus         4 ~~~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~-~~~~ifsd~~d------~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~   76 (252)
T PF02434_consen    4 TLDDIFIAVKTTKKFHKTRAPAIKQTWAKRCN-KQTFIFSDAED------PSLPTVTGVHLVNPNCDAGHCRKTLSCKMA   76 (252)
T ss_dssp             -GGGEEEEEE--GGGTTTTHHHHHHTGGGGSG-GGEEEEESS--------HHHHHHHGGGEEE-------------HHHH
T ss_pred             ccccEEEEEEeCHHHHHHHHHHHHHHHHhhcC-CceEEecCccc------cccccccccccccCCCcchhhHHHHHHHHH
Confidence            45799999999999999999999999999997 5556 687653      33432     23444444432 22233323


Q ss_pred             HHHHHHHhCCCCceEEEEcCCccccHHHHHHHHhcCCCCCCeEEEeecCCCcccc-cc----ccCCCCCCCccCCCceee
Q psy6218         405 LQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEF-GL----LSLEYDENFCMGGPGVIM  479 (533)
Q Consensus       405 L~~l~e~~~~~~dWFlKvDDDTYVnvdNL~~~L~~~dpseplYiG~~~~~~~~ey-~~----~~~~~~~~Y~sGGAGYVL  479 (533)
                      ..|-+ ++.+++|||+++||||||+++||+++|.+|||++|+|+|+++.....+- ..    ........|++|||||||
T Consensus        77 ~~y~~-~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~~~~~~~f~~GGaG~vl  155 (252)
T PF02434_consen   77 YEYDH-FLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKSKDSGFWFATGGAGYVL  155 (252)
T ss_dssp             HHHHH-HHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE----------------------EE-GGG-EEE
T ss_pred             HHHHh-hhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccccCcCceEeeCCCeeHHH
Confidence            33321 2234789999999999999999999999999999999999875432110 00    011235689999999999


Q ss_pred             CHHHHHHHHHhHHHhhcc----CCCCchhHHHHHHHHhccCCceeecCCCcc
Q psy6218         480 SRATLALVAPHIKYCLKN----LYTTHEDVELGRCVQKFAGIPCTWSYEVSI  527 (533)
Q Consensus       480 Sr~aLrkL~~~~~~C~~~----~~~~~EDV~LG~CL~~~lGV~~t~s~e~~~  527 (533)
                      |+++|++|.+....|...    ....+||+.||.|++.++||+++++..+++
T Consensus       156 Sr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs  207 (252)
T PF02434_consen  156 SRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHS  207 (252)
T ss_dssp             EHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---
T ss_pred             hHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcc
Confidence            999999998765544322    124589999999999989999999988765

It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.

>KOG2246|consensus

Probab=99.96  E-value=1.3e-29  Score=265.73  Aligned_cols=186  Identities=27%  Similarity=0.477  Sum_probs=156.3

Q ss_pred             CCCCCceEEEEEEcCCCChHHHHHHHHHhhhccCCCcEEEEecCCCCCCCCCCCCCcEEecCCCCCCCchHHHHHHHHHH
Q psy6218         329 GLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSYPPQKKSFLMLQYM  408 (533)
Q Consensus       329 ~l~~~~~LlI~V~Tsp~~~~tRr~AIR~TWgr~~~~rvvFfsg~~~~i~~~d~~lpvV~L~~~dD~Ynlt~Kt~~~L~~l  408 (533)
                      .+..+.+|+|+|+|++.++.+|++++.+||+++|+ +..|++..-   .+.+..++.|.++..+..++++.|+..+++|+
T Consensus        86 ~l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~-~~~f~s~~~---s~~~~~f~~v~~~~~~g~~~~~~ktr~~~~yv  161 (364)
T KOG2246|consen   86 WLSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD-KGIFFSPTL---SKDDSRFPTVYYNLPDGYRSLWRKTRIAFKYV  161 (364)
T ss_pred             ccCCCceEEEEEEecCcCceeehhhhhcccccccC-cceecCccC---CCCCCcCceeeccCCcchHHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999997 899998431   12356788887754433346899999999999


Q ss_pred             HHHhCCCCceEEEEcCCccccHHHHHHHHhcCCCCCCeEEEeecCCCccccccccCCCCCCCccCCCceeeCHHHHHHHH
Q psy6218         409 WERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVA  488 (533)
Q Consensus       409 ~e~~~~~~dWFlKvDDDTYVnvdNL~~~L~~~dpseplYiG~~~~~~~~ey~~~~~~~~~~Y~sGGAGYVLSr~aLrkL~  488 (533)
                      ++++.+++|||+|+|||||+++|||+++|.+|||++|+|+|+.....          ....|.+|||||++|+++++.++
T Consensus       162 ~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~----------~~~~y~~g~ag~~ls~aa~~~la  231 (364)
T KOG2246|consen  162 YDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSY----------FQNGYSSGGAGYVLSFAALRRLA  231 (364)
T ss_pred             HHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccccc----------cccccccCCCCcceeHHHHHHHH
Confidence            99998999999999999999999999999999999999999987642          12339999999999999999998


Q ss_pred             HhH----HHhhccCCCCchhHHHHHHHHhccCCceeecCCCcccc
Q psy6218         489 PHI----KYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEVSITS  529 (533)
Q Consensus       489 ~~~----~~C~~~~~~~~EDV~LG~CL~~~lGV~~t~s~e~~~~~  529 (533)
                      +.+    +.|..+.....||+.||+||++ +||++++++|.....
T Consensus       232 ~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~-~GV~~~d~~d~dg~~  275 (364)
T KOG2246|consen  232 ERLLNNEDKCPQRYPSYGEDRRIGRCLAE-VGVPATDERDEDGRG  275 (364)
T ss_pred             HHHhcchhhcccccCCchhHHHHHHHHHH-hCCCccCchhhhccc
Confidence            754    5687652225999999999999 899999997765543

>PLN03133 beta-1,3-galactosyltransferase; Provisional

Probab=99.94  E-value=8.3e-26  Score=249.41  Aligned_cols=232  Identities=19%  Similarity=0.216  Sum_probs=163.7

Q ss_pred             cccccccceeeeehhcccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCceEEEEEEcCCCChHH
Q psy6218         270 VGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPATQGQTDGWSSSGGEKGRGISDVGLSESGLLFVGVMTANSYLNT  349 (533)
Q Consensus       270 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~p~~~~q~~~~~~~~~~~~~~~~~~~l~~~~~LlI~V~Tsp~~~~t  349 (533)
                      ..|+-+|++.+-+|.+..++.+.+.    .+.-++       +.|.+         .++....+.+|+|+|.|++++++ 
T Consensus       341 ~~l~V~GDv~l~SV~a~~~p~~~~~----~~~~d~-------e~lkA---------ppL~~~~~~~LlI~V~Sap~nf~-  399 (636)
T PLN03133        341 SEVRISGDLKLISVLASGLPTSEDS----EHVIDL-------EALKS---------PPLSPKKPLDLFIGVFSTANNFK-  399 (636)
T ss_pred             eEEEEeCcEEEEEEEeeCCCCCCch----hcccch-------HHhcC---------CCCCCCCceEEEEEEeCCcccHH-
Confidence            4578889999999999977654431    222222       22211         11212355799999999999986 


Q ss_pred             HHHHHHHhhhccCC-----CcEEEEecCCCCCC------CCCCCCCcEEecCCCCCC-CchHHHHHHHHHHHHHhCCCCc
Q psy6218         350 RATSVYDTWARDIP-----GRVAFFTSESSTLP------AARPDLPLVKLRGVDDSY-PPQKKSFLMLQYMWERYGDKYE  417 (533)
Q Consensus       350 Rr~AIR~TWgr~~~-----~rvvFfsg~~~~i~------~~d~~lpvV~L~~~dD~Y-nlt~Kt~~~L~~l~e~~~~~~d  417 (533)
                      ||+|||+|||+...     .+++|++|.+.+..      .+...+..|.+.++.|+| |+++|+++++.|.. ++ .+++
T Consensus       400 rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~-~c-~~ak  477 (636)
T PLN03133        400 RRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGT-EV-VSAK  477 (636)
T ss_pred             HHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHH-hC-CCce
Confidence            78999999998531     25789999764210      122233344444577777 57999999999874 34 5899


Q ss_pred             eEEEEcCCccccHHHHHHHHhcCCCCCCeEEEeecCCC---c---ccccc---cc-CCCCCCCccCCCceeeCHHHHHHH
Q psy6218         418 WFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGN---Q---EEFGL---LS-LEYDENFCMGGPGVIMSRATLALV  487 (533)
Q Consensus       418 WFlKvDDDTYVnvdNL~~~L~~~dpseplYiG~~~~~~---~---~ey~~---~~-~~~~~~Y~sGGAGYVLSr~aLrkL  487 (533)
                      |+||+|||+|||+++|.++|+..++.+.+|+|+.....   +   ..|+.   .+ ...+|+||+| +|||||++++++|
T Consensus       478 FilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG-~gYVlS~Dla~~L  556 (636)
T PLN03133        478 YVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHG-PGYVVSRDIAKEV  556 (636)
T ss_pred             EEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCc-CEEEEcHHHHHHH
Confidence            99999999999999999999988778889999875421   1   22321   12 2368999975 9999999999999


Q ss_pred             HHhHHHhhccCCCCchhHHHHHHHHhc--cCCceeecCCCc
Q psy6218         488 APHIKYCLKNLYTTHEDVELGRCVQKF--AGIPCTWSYEVS  526 (533)
Q Consensus       488 ~~~~~~C~~~~~~~~EDV~LG~CL~~~--lGV~~t~s~e~~  526 (533)
                      +....... -++++.|||++|.|++.+  +|+++.+..+..
T Consensus       557 ~~~s~s~~-l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r  596 (636)
T PLN03133        557 YKRHKEGR-LKMFKLEDVAMGIWIAEMKKEGLEVKYENDGR  596 (636)
T ss_pred             HHhhhhcc-cCcCChhhHhHHHHHHHhcccCCCceeeCCCc
Confidence            97653221 246889999999998642  577776666543

>PLN03193 beta-1,3-galactosyltransferase; Provisional

Probab=99.93  E-value=7.3e-26  Score=237.99  Aligned_cols=187  Identities=18%  Similarity=0.126  Sum_probs=140.9

Q ss_pred             CCCceEEEEEEcCCCChHHHHHHHHHhhhccCC----------CcEEEEecCCCCC-C-------CCCCCCCcEEecCCC
Q psy6218         331 SESGLLFVGVMTANSYLNTRATSVYDTWARDIP----------GRVAFFTSESSTL-P-------AARPDLPLVKLRGVD  392 (533)
Q Consensus       331 ~~~~~LlI~V~Tsp~~~~tRr~AIR~TWgr~~~----------~rvvFfsg~~~~i-~-------~~d~~lpvV~L~~~d  392 (533)
                      ..+..|+|+|.|++++++ ||+|||+||++...          .+++|++|.+.+. .       .+......+.+.++.
T Consensus       136 ~~~~~LvIgI~Sap~~~~-RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfv  214 (408)
T PLN03193        136 KRRYLMVVGINTAFSSRK-RRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHV  214 (408)
T ss_pred             cceEEEEEEEeCCCCCHH-HHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecc
Confidence            456799999999999986 88999999997421          3688999987420 0       112223333333466


Q ss_pred             CCC-CchHHHHHHHHHHHHHhCCCCceEEEEcCCccccHHHHHHHHhcCCCCCCeEEEeecCCCc-----ccccc--cc-
Q psy6218         393 DSY-PPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQ-----EEFGL--LS-  463 (533)
Q Consensus       393 D~Y-nlt~Kt~~~L~~l~e~~~~~~dWFlKvDDDTYVnvdNL~~~L~~~dpseplYiG~~~~~~~-----~ey~~--~~-  463 (533)
                      |.| |++.|++++++|+++.+  +++|+||+|||+|||+++|..+|++......+|+|....+..     ..|+.  .+ 
T Consensus       215 DsY~NLT~KTl~~f~wA~~~~--dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~  292 (408)
T PLN03193        215 EGYLELSAKTKTYFATAVAMW--DADFYVKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWK  292 (408)
T ss_pred             cccccchHHHHHHHHHHHHcC--CCeEEEEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCccccc
Confidence            777 68999999999998764  899999999999999999999998776666799999754321     11110  11 


Q ss_pred             ----CCCCCCCccCCCceeeCHHHHHHHHHhHHHhhccCCCCchhHHHHHHHHhccCCceeecCCC
Q psy6218         464 ----LEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEV  525 (533)
Q Consensus       464 ----~~~~~~Y~sGGAGYVLSr~aLrkL~~~~~~C~~~~~~~~EDV~LG~CL~~~lGV~~t~s~e~  525 (533)
                          ...+|+||+| +|||||+++++.|+.+...-   ..+..|||+||.||.. ++|...|++.+
T Consensus       293 ~~~~~~~YPpyAsG-~gYVlS~DLa~~I~~n~~~L---~~y~~EDV~vG~Wl~~-L~V~~vdd~~f  353 (408)
T PLN03193        293 FGENGNKYFRHATG-QLYAISKDLASYISINQHVL---HKYANEDVSLGSWFIG-LDVEHIDDRRL  353 (408)
T ss_pred             ccCccccCCCCCCc-ceEEehHHHHHHHHhChhhh---cccCcchhhhhhHhcc-CCceeeecccc
Confidence                1357999976 99999999999999765543   2367999999999987 78888777765

>KOG2287|consensus

Probab=99.92  E-value=1.2e-24  Score=227.75  Aligned_cols=186  Identities=19%  Similarity=0.252  Sum_probs=147.6

Q ss_pred             CceEEEEEEcCCCChHHHHHHHHHhhhccCC-----CcEEEEecCCCCCC-------CCCCCCCcEEecCCCCCC-CchH
Q psy6218         333 SGLLFVGVMTANSYLNTRATSVYDTWARDIP-----GRVAFFTSESSTLP-------AARPDLPLVKLRGVDDSY-PPQK  399 (533)
Q Consensus       333 ~~~LlI~V~Tsp~~~~tRr~AIR~TWgr~~~-----~rvvFfsg~~~~i~-------~~d~~lpvV~L~~~dD~Y-nlt~  399 (533)
                      ..+|+++|.|.+++++ ||+|||+|||+...     .+++|++|......       .+.+....|.+.++.|+| |++.
T Consensus        94 ~~~lLl~V~S~~~~fa-rR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df~Dty~nltl  172 (349)
T KOG2287|consen   94 PPELLLLVKSAPDNFA-RRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDFEDTYFNLTL  172 (349)
T ss_pred             CceEEEEEecCCCCHH-HHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEecccchhchHH
Confidence            4789999999999997 77999999999764     37899999876310       111223445555677777 6899


Q ss_pred             HHHHHHHHHHHHhCCCCceEEEEcCCccccHHHHHHHHhcC-CCCCCeEEEeecCCC------cccccc---ccC-CCCC
Q psy6218         400 KSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSV-DSSKPQFIGQAGRGN------QEEFGL---LSL-EYDE  468 (533)
Q Consensus       400 Kt~~~L~~l~e~~~~~~dWFlKvDDDTYVnvdNL~~~L~~~-dpseplYiG~~~~~~------~~ey~~---~~~-~~~~  468 (533)
                      |++++++|..+++ +++++++|+|||+||++++|..+|++. ++++.+|+|+.....      ...|+.   .++ ..+|
T Consensus       173 Ktl~~l~w~~~~c-p~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y~~~~YP  251 (349)
T KOG2287|consen  173 KTLAILLWGVSKC-PDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEYPCSVYP  251 (349)
T ss_pred             HHHHHHHHHHhcC-CcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHCCCCCCC
Confidence            9999999998776 599999999999999999999999999 899999999976531      122221   123 3689


Q ss_pred             CCccCCCceeeCHHHHHHHHHhHHHhhccCCCCchhHHHHHHHHhccCCceeecCC
Q psy6218         469 NFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYE  524 (533)
Q Consensus       469 ~Y~sGGAGYVLSr~aLrkL~~~~~~C~~~~~~~~EDV~LG~CL~~~lGV~~t~s~e  524 (533)
                      +||+| +|||+|++++++|++....   ..++..|||++|.|+++.+||.+.+...
T Consensus       252 ~Y~sG-~gYvis~~~a~~l~~~s~~---~~~~~iEDV~~g~~l~~~~gi~~~~~~~  303 (349)
T KOG2287|consen  252 PYASG-PGYVISGDAARRLLKASKH---LKFFPIEDVFVGGCLAEDLGIKPVNHPG  303 (349)
T ss_pred             CcCCC-ceeEecHHHHHHHHHHhcC---CCccchHHHHHHHHHHHhcCCCcccCcc
Confidence            99975 9999999999999985433   3568899999999999955999887766

>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=99.90  E-value=1.4e-23  Score=201.38  Aligned_cols=167  Identities=22%  Similarity=0.335  Sum_probs=128.2

Q ss_pred             HHHHHHHhhhccCC-----CcEEEEecCCC--CC------CCCCCCCCcEEecCCCCCC-CchHHHHHHHHHHHHHhCCC
Q psy6218         350 RATSVYDTWARDIP-----GRVAFFTSESS--TL------PAARPDLPLVKLRGVDDSY-PPQKKSFLMLQYMWERYGDK  415 (533)
Q Consensus       350 Rr~AIR~TWgr~~~-----~rvvFfsg~~~--~i------~~~d~~lpvV~L~~~dD~Y-nlt~Kt~~~L~~l~e~~~~~  415 (533)
                      ||++||+||++...     .+++|++|.+.  +.      .++.+....+.+.++.|+| |++.|++++++|+.++| ++
T Consensus         2 rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c-~~   80 (195)
T PF01762_consen    2 RRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHC-PN   80 (195)
T ss_pred             hHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhC-Cc
Confidence            78999999998753     37899999876  21      1223334444444566666 68999999999999876 58


Q ss_pred             CceEEEEcCCccccHHHHHHHHhcC--CCCCCeEEEeecCCCc------ccccc---cc-CCCCCCCccCCCceeeCHHH
Q psy6218         416 YEWFMRADDDLYVRGERLARMLRSV--DSSKPQFIGQAGRGNQ------EEFGL---LS-LEYDENFCMGGPGVIMSRAT  483 (533)
Q Consensus       416 ~dWFlKvDDDTYVnvdNL~~~L~~~--dpseplYiG~~~~~~~------~ey~~---~~-~~~~~~Y~sGGAGYVLSr~a  483 (533)
                      ++|++|+|||+|||+++|..+|...  ++.+..+.|.......      ..++.   .+ ...+|+||+| +||+||+++
T Consensus        81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G-~~yvls~~~  159 (195)
T PF01762_consen   81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSG-GGYVLSSDV  159 (195)
T ss_pred             hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCC-CeEEecHHH
Confidence            9999999999999999999999987  6667777787654321      11211   11 3367999985 899999999


Q ss_pred             HHHHHHhHHHhhccCCCCchhHHHHHHHHhccCCceeec
Q psy6218         484 LALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWS  522 (533)
Q Consensus       484 LrkL~~~~~~C~~~~~~~~EDV~LG~CL~~~lGV~~t~s  522 (533)
                      ++.|+.....-   +.++.|||++|.|+++ +||+++|.
T Consensus       160 v~~i~~~~~~~---~~~~~eDv~iGi~~~~-~~i~~~~~  194 (195)
T PF01762_consen  160 VKRIYKASSHT---PFFPLEDVFIGILAEK-LGIKPIHD  194 (195)
T ss_pred             HHHHHHHhhcC---CCCCchHHHHHHHHHH-CCCCccCC
Confidence            99999875543   4578999999999999 89999875

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane

>PLN03153 hypothetical protein; Provisional

Probab=99.88  E-value=1.3e-21  Score=210.20  Aligned_cols=193  Identities=16%  Similarity=0.266  Sum_probs=142.4

Q ss_pred             CCCceEEEEEEcCCCChHHHHHHHHHhhhccCCCcEEEEecCCCCCCCCCCCCCcEEecCCCCC--C----Cch--HHHH
Q psy6218         331 SESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDS--Y----PPQ--KKSF  402 (533)
Q Consensus       331 ~~~~~LlI~V~Tsp~~~~tRr~AIR~TWgr~~~~rvvFfsg~~~~i~~~d~~lpvV~L~~~dD~--Y----nlt--~Kt~  402 (533)
                      ..-.+|+++|.++.+.+++|+..|+.||........+|+...... ...+..+|.+.+....+.  |    .+.  ..+.
T Consensus       119 t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~-~~~~~~~P~i~is~d~s~f~y~~~~Gh~sa~rI~  197 (537)
T PLN03153        119 LSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSP-EEGDDSLPPIMVSEDTSRFRYTNPTGHPSGLRIS  197 (537)
T ss_pred             CccccEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCC-CCCcCCCCCEEeCCCcccccccCCCCcHHHHHHH
Confidence            456799999999999999999999999998543245555333221 123566787776422221  2    122  2222


Q ss_pred             HHHHHHHHHhCCCCceEEEEcCCccccHHHHHHHHhcCCCCCCeEEEeecCCCccccccccCCCCCCCccCCCceeeCHH
Q psy6218         403 LMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRA  482 (533)
Q Consensus       403 ~~L~~l~e~~~~~~dWFlKvDDDTYVnvdNL~~~L~~~dpseplYiG~~~~~~~~ey~~~~~~~~~~Y~sGGAGYVLSr~  482 (533)
                      .+....++...+++|||+++|||||++++||+++|++||+++++|+|........+.     .....|++|||||+||++
T Consensus       198 rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~-----~f~~~fA~GGAG~~LSrP  272 (537)
T PLN03153        198 RIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANS-----YFSHNMAFGGGGIAISYP  272 (537)
T ss_pred             HHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccccccc-----ccccccccCCceEEEcHH
Confidence            233434444457999999999999999999999999999999999999876532111     012468899999999999


Q ss_pred             HHHHHHHhHHHhhccC-CCCchhHHHHHHHHhccCCceeecCCCccccc
Q psy6218         483 TLALVAPHIKYCLKNL-YTTHEDVELGRCVQKFAGIPCTWSYEVSITSL  530 (533)
Q Consensus       483 aLrkL~~~~~~C~~~~-~~~~EDV~LG~CL~~~lGV~~t~s~e~~~~~~  530 (533)
                      ++++|.+..+.|.... ....+|..||+|+++ +||++++...++|.-.
T Consensus       273 Lae~L~~~~d~C~~rY~~~~~gD~rL~~CL~e-lGV~LT~~~gfhQ~D~  320 (537)
T PLN03153        273 LAEALSRILDDCLDRYPKLYGSDDRLHACITE-LGVPLSREPGFHQWDI  320 (537)
T ss_pred             HHHHHHHHhhhhhhhcccCCCcHHHHHHHHHH-cCCCceecCCcccccc
Confidence            9999999988997531 235789999999998 7999999999988643

>KOG3708|consensus

Probab=99.76  E-value=7.4e-19  Score=186.44  Aligned_cols=186  Identities=24%  Similarity=0.404  Sum_probs=149.8

Q ss_pred             CCCcccccCCCCCceEEEEEEcCCCChHHHHHHHHHhhhccCCCcEEEEecCCCCCCCCCCCCCcEEecCCCCCCCchHH
Q psy6218         321 KGRGISDVGLSESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSYPPQKK  400 (533)
Q Consensus       321 ~~~~~~~~~l~~~~~LlI~V~Tsp~~~~tRr~AIR~TWgr~~~~rvvFfsg~~~~i~~~d~~lpvV~L~~~dD~Ynlt~K  400 (533)
                      +.+|+++ +++.+.+|+++|+|..    +-+.+|.+|-+++++ ++.||.+.+.. ......+.+|..   .|. +.++.
T Consensus        14 RtRy~~t-ELG~RErl~~aVmte~----tlA~a~NrT~ahhvp-rv~~F~~~~~i-~~~~a~~~~vs~---~d~-r~~~~   82 (681)
T KOG3708|consen   14 RTRYAAT-ELGTRERLMAAVMTES----TLALAINRTLAHHVP-RVHLFADSSRI-DNDLAQLTNVSP---YDL-RGQKT   82 (681)
T ss_pred             hhhhhhh-hhhhHHHHHHHHHHHH----HHHHHHHHHHHhhcc-eeEEeeccccc-cccHhhccccCc---ccc-Ccccc
Confidence            4556665 4899999999999922    577899999999997 99999887642 000111222221   111 23567


Q ss_pred             HHHHHHHHHHHhCCCCceEEEEcCCccccHHHHHHHHhcCCCCCCeEEEeecCCCccccccccCCCCCCCccCCCceeeC
Q psy6218         401 SFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMS  480 (533)
Q Consensus       401 t~~~L~~l~e~~~~~~dWFlKvDDDTYVnvdNL~~~L~~~dpseplYiG~~~~~~~~ey~~~~~~~~~~Y~sGGAGYVLS  480 (533)
                      ..+.++++++++.++||||+.+.|+|||+...|++++..++-++++|||.-..+            ...=|++++||+||
T Consensus        83 ~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~------------gs~rC~l~~G~LLS  150 (681)
T KOG3708|consen   83 HSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAED------------GSGRCRLDTGMLLS  150 (681)
T ss_pred             HHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhC------------ccCccccccceeec
Confidence            778899999999999999999999999999999999999999999999954331            12229999999999


Q ss_pred             HHHHHHHHHhHHHhhccCCCCchhHHHHHHHHhccCCceeecCCCc-ccc
Q psy6218         481 RATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSYEVS-ITS  529 (533)
Q Consensus       481 r~aLrkL~~~~~~C~~~~~~~~EDV~LG~CL~~~lGV~~t~s~e~~-~~~  529 (533)
                      +.++++|..+.+.|.......-+|+++|+|++..+||.|+...++. +++
T Consensus       151 ~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s  200 (681)
T KOG3708|consen  151 QSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYS  200 (681)
T ss_pred             HHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhh
Confidence            9999999999999988777788899999999998999999999988 444

>KOG2288|consensus

Probab=99.75  E-value=4.2e-18  Score=168.75  Aligned_cols=184  Identities=21%  Similarity=0.255  Sum_probs=135.8

Q ss_pred             CCCceEEEEEEcCCCChHHHHHHHHHhhhccCC----------CcEEEEecCCCCC-------CCCCCCC-CcEEecCCC
Q psy6218         331 SESGLLFVGVMTANSYLNTRATSVYDTWARDIP----------GRVAFFTSESSTL-------PAARPDL-PLVKLRGVD  392 (533)
Q Consensus       331 ~~~~~LlI~V~Tsp~~~~tRr~AIR~TWgr~~~----------~rvvFfsg~~~~i-------~~~d~~l-pvV~L~~~d  392 (533)
                      ..+...+|+|.|++...+ ||+++|+||....+          ..+.|++|.....       .+++... ..+.|++..
T Consensus         8 ~~k~l~vigI~T~f~s~~-RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~   86 (274)
T KOG2288|consen    8 RRKVLLVIGINTAFSSRK-RRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHE   86 (274)
T ss_pred             ccceEEEEEeecccchhh-hHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhH
Confidence            357789999999999876 88999999998732          1378999984321       1112222 345566555


Q ss_pred             CCC-CchHHHHHHHHHHHHHhCCCCceEEEEcCCccccHHHHHHHHhcCCCCCCeEEEeecCCCc--ccccccc------
Q psy6218         393 DSY-PPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQ--EEFGLLS------  463 (533)
Q Consensus       393 D~Y-nlt~Kt~~~L~~l~e~~~~~~dWFlKvDDDTYVnvdNL~~~L~~~dpseplYiG~~~~~~~--~ey~~~~------  463 (533)
                      +.| ++..|++.++.++..++  +++||+|+|||+||+++.|...|+++.....+|+|..-.+..  ++-++++      
T Consensus        87 E~Y~~Ls~Kt~~~f~~A~~~~--daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~EpeWkf  164 (274)
T KOG2288|consen   87 EAYEELSAKTKAFFSAAVAHW--DAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPEWKF  164 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--cceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChhhhc
Confidence            667 58999999999999988  899999999999999999999999987667899999754322  1011111      


Q ss_pred             CC--CCCCCccCCCceeeCHHHHHHHHHhHHHhhccCCCCchhHHHHHHHHhccCCceeec
Q psy6218         464 LE--YDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWS  522 (533)
Q Consensus       464 ~~--~~~~Y~sGGAGYVLSr~aLrkL~~~~~~C~~~~~~~~EDV~LG~CL~~~lGV~~t~s  522 (533)
                      .+  .+.+|+.| +||+||++++..|.-+.+.-.   .+..|||.+|.|+-- +.|.-.|+
T Consensus       165 g~~g~YfrhA~G-~~YvlS~dLa~yi~in~~lL~---~y~nEDVSlGaW~~g-ldV~h~dd  220 (274)
T KOG2288|consen  165 GDNGNYFRHATG-GGYVLSKDLATYISINRQLLH---KYANEDVSLGAWMIG-LDVEHVDD  220 (274)
T ss_pred             CcccccchhccC-ceEEeeHHHHHHHHHhHHHHH---hhccCCcccceeeee-eeeeEecC
Confidence            11  26788876 899999999999998765532   268999999999964 44444443

>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional

Probab=99.66  E-value=6.3e-16  Score=161.38  Aligned_cols=176  Identities=15%  Similarity=0.213  Sum_probs=121.3

Q ss_pred             CCceEEEEEEcCCCC-hHHHHHHHHHhhhccCC---------C--cEEEEecCCCCC----C----CCCCCCC-cEEecC
Q psy6218         332 ESGLLFVGVMTANSY-LNTRATSVYDTWARDIP---------G--RVAFFTSESSTL----P----AARPDLP-LVKLRG  390 (533)
Q Consensus       332 ~~~~LlI~V~Tsp~~-~~tRr~AIR~TWgr~~~---------~--rvvFfsg~~~~i----~----~~d~~lp-vV~L~~  390 (533)
                      ..-.++++|.|..++ ..+||.++|+||-+-..         +  -+.|+++...+.    .    ++..... +|.++ 
T Consensus        78 ~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilp-  156 (382)
T PTZ00210         78 QRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLP-  156 (382)
T ss_pred             CCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEe-
Confidence            345778889888765 23588999999987421         1  256777765321    0    1111122 33332 


Q ss_pred             CC------------------CCC-CchHHHHHHHHHHHHHhCCCCceEEEEcCCccccHHHHHHHHhcCCCCCCeEEEee
Q psy6218         391 VD------------------DSY-PPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQA  451 (533)
Q Consensus       391 ~d------------------D~Y-nlt~Kt~~~L~~l~e~~~~~~dWFlKvDDDTYVnvdNL~~~L~~~dpseplYiG~~  451 (533)
                      +.                  |.+ ++++|+++.++|++..+ ++++|+||+|||+||+++++..+|+.. |+..+|+|+.
T Consensus       157 f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~c-P~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~v  234 (382)
T PTZ00210        157 TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMF-PNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGRY  234 (382)
T ss_pred             cccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhC-CCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEee
Confidence            21                  222 36899999999998876 599999999999999999999999664 6677999997


Q ss_pred             cCCCccccccccCCCCCCCccCCCceeeCHHHHHHHHHhHHHhhc--------------cCCCCchhHHHHHHHHhccC
Q psy6218         452 GRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLK--------------NLYTTHEDVELGRCVQKFAG  516 (533)
Q Consensus       452 ~~~~~~ey~~~~~~~~~~Y~sGGAGYVLSr~aLrkL~~~~~~C~~--------------~~~~~~EDV~LG~CL~~~lG  516 (533)
                      .....     ......++||+| .||+||+++++.|++......-              ......||+.+|.+|+..++
T Consensus       235 ~~~~~-----p~Rd~~PpY~~G-~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~vLr~~~k  307 (382)
T PTZ00210        235 NYYNR-----IWRRNQLTYVNG-YCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMILREKVV  307 (382)
T ss_pred             CCCCc-----cccCCCCCcccc-ceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHHHHHhcC
Confidence            65321     111235899975 9999999999999976322110              02368999999999975443

>KOG3708|consensus

Probab=99.64  E-value=6.9e-17  Score=171.64  Aligned_cols=153  Identities=18%  Similarity=0.271  Sum_probs=103.0

Q ss_pred             ccceeeccCCCCCcchhcccCCccCCCcccCCCceeeeHHHHHHhcccHHHHHhhccCCCCccccchhhhhhcCCccccc
Q psy6218           7 RDKSFYTHGGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPFLSS   86 (533)
Q Consensus         7 ~~~~~~g~~~~g~~~~~~~~~~~~~~~yC~~g~G~~~Sr~~l~~~~p~l~~C~~~~~s~~~D~~lGRCi~~~~~~~C~~~   86 (533)
                      ..+||||.       |+  .+   +..-|.++.||+||+++|++|+|||+.|++++.|.++|+||||||++++||.|+..
T Consensus       125 n~dlymGE-------e~--~~---gs~rC~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~  192 (681)
T KOG3708|consen  125 NEDLYMGE-------EA--ED---GSGRCRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPL  192 (681)
T ss_pred             ccccccch-------hh--hC---ccCccccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccch
Confidence            35899993       44  22   22229999999999999999999999999999999999999999999999999998


Q ss_pred             c---------cccc---c-cccccCCcccccccccccc------eeeccc-------c------CCCCCcccccceeeec
Q psy6218          87 R---------NRRE---D-VDMIGESQPLRKQTSVQDK------IRLGRQ-------S------NPRPSTYKASEVSLST  134 (533)
Q Consensus        87 ~---------~~~~---~-~~~~~~~~~f~~a~tv~~~------~~~~~~-------~------~~~~~~~~~~~~~~~~  134 (533)
                      +         +..+   | +.+.+.+++|++|+||||-      -+||.-       +      -=.-..|.-++.+.+.
T Consensus       193 hQGvrq~s~~~dspgr~~~~~e~~~s~aFr~A~tv~pv~~p~d~yrLH~yfsr~elera~~ei~~leaei~rla~~~~~~  272 (681)
T KOG3708|consen  193 HQGVRQYSEREDSPGRHDSIPEWEGSPAFRSALTVHPVLSPADMYRLHKYFSRVELERAYREIIKLEAEISRLAELEARG  272 (681)
T ss_pred             hhhHHhhhHhhcCCCccccchhhcCChHHhhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence            2         1112   2 3333999999999999996      233321       0      0001122334445555


Q ss_pred             eeecccccchhhhhhcccccchhhhhhh-hhcCCCcccc
Q psy6218         135 KFKLGLWSPAIELFFLCPQDFAWASTWA-SSCGRNFSVS  172 (533)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  172 (533)
                      +-..--|-+++---+--|.-|. ..+|- .-=+|||+-+
T Consensus       273 ~~~ai~WP~glPpps~P~sR~e-VltWdyft~th~F~~~  310 (681)
T KOG3708|consen  273 TGEAISWPVGLPPPSKPPSRFE-VLTWDYFTETHLFSCA  310 (681)
T ss_pred             ccceecCCCCCCCCCCCcchhe-eeehhhhccccccccC
Confidence            5444457777655555454443 23443 2345666654

>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase

Probab=99.26  E-value=1.7e-12  Score=142.34  Aligned_cols=58  Identities=36%  Similarity=0.661  Sum_probs=51.6

Q ss_pred             cHHHHHhhccCCCCccccchhhhhhcCCccccc--------cccc-cccccccCCcccccccccccc
Q psy6218          54 HIKYCLKNLYTTHEDVELGRCVQKFAGIPFLSS--------RNRR-EDVDMIGESQPLRKQTSVQDK  111 (533)
Q Consensus        54 ~l~~C~~~~~s~~~D~~lGRCi~~~~~~~C~~~--------~~~~-~~~~~~~~~~~f~~a~tv~~~  111 (533)
                      ||++|+++++|+||||||||||++++||+||++        |++. +++...+++++|.+|+||||-
T Consensus         1 hl~~C~~~~~s~~~Dv~lGRCI~~~~gi~Ct~~~q~l~y~~~~~~~~~~~~~~~~~~~~~AiTlHPv   67 (499)
T PF05679_consen    1 HLDWCLKNIYSNHEDVELGRCIKKFTGISCTWSYQGLFYHNYELNKNDFIGDLKNKEFHNAITLHPV   67 (499)
T ss_pred             ChhHHhhhcCCCCchhHHHHHHHHhcCCCeeecccceEEEeeccCCCcccccccchhhhcceeeccC
Confidence            899999999999999999999999999999999        4555 344444889999999999997

Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane

>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []

Probab=98.76  E-value=1.7e-09  Score=108.99  Aligned_cols=87  Identities=22%  Similarity=0.330  Sum_probs=46.4

Q ss_pred             ccceeeccCCCCCcchhcc-----cCCccCCCcccCCCceeeeHHHHHHhcccHHHHHhhccC----CCCccccchhhhh
Q psy6218           7 RDKSFYTHGGRGNQEEFGL-----LSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYT----THEDVELGRCVQK   77 (533)
Q Consensus         7 ~~~~~~g~~~~g~~~~~~~-----~~~~~~~~yC~~g~G~~~Sr~~l~~~~p~l~~C~~~~~s----~~~D~~lGRCi~~   77 (533)
                      .+++|||++...++.+-..     -....+-.||+||+|++|||+++++|.|+...|.-.-..    ..+|+.||+||..
T Consensus       114 ~~~~yiG~~~~~~~~~~~~~~~~~~~~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~  193 (252)
T PF02434_consen  114 SEPIYIGRPSGDRPIEIIHRFNPNKSKDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIEN  193 (252)
T ss_dssp             TS--EEE-EE----------------------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHH
T ss_pred             ccCEEeeeeccCccceeeccccccccCcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHh
Confidence            5799999987766655210     023456679999999999999999999988877432222    3789999999999


Q ss_pred             hcCCcccccccccccc
Q psy6218          78 FAGIPFLSSRNRREDV   93 (533)
Q Consensus        78 ~~~~~C~~~~~~~~~~   93 (533)
                      .+||+|+.+..+..+.
T Consensus       194 ~lgv~lt~s~~fhs~~  209 (252)
T PF02434_consen  194 LLGVPLTHSPLFHSHL  209 (252)
T ss_dssp             TT---EEE-TT---SS
T ss_pred             cCCcceeechhhcccC
Confidence            9999999995544433

It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.

>KOG3588|consensus

Probab=98.08  E-value=9e-07  Score=92.65  Aligned_cols=80  Identities=35%  Similarity=0.541  Sum_probs=55.6

Q ss_pred             eeHHHHHHhcccHHHHHhhccCCCCccccchhhhhhcCCccccccccccccccccCCcccccccccccceeeccccCCC-
Q psy6218          43 MSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPFLSSRNRREDVDMIGESQPLRKQTSVQDKIRLGRQSNPR-  121 (533)
Q Consensus        43 ~Sr~~l~~~~p~l~~C~~~~~s~~~D~~lGRCi~~~~~~~C~~~~~~~~~~~~~~~~~~f~~a~tv~~~~~~~~~~~~~-  121 (533)
                      |||++|+    ||+.|++.+++.|||+||||||+++..-=-+.      |-... ....-++-.-.+.+||||++|||. 
T Consensus         1 Msr~~l~----hl~~cL~~m~t~hedve~grc~r~~mq~Lf~~------n~~an-k~sy~~~~~~~~~aitlhp~K~p~~   69 (494)
T KOG3588|consen    1 MSRDTLL----HLESCLQHMLTSHEDVELGRCIRKHMQKLFHN------NQSAN-KESYAKNMKELKDAITLHPIKDPAV   69 (494)
T ss_pred             CcHHHHH----HHHHHHHHHHhhccCcchhHHHHHHHHHHhhh------hhhhc-ChhhhccchhhhhhhccccccCHHH
Confidence            6899998    99999999999999999999999994310111      11111 111122244567889999999994 


Q ss_pred             ------------CCcccccceeee
Q psy6218         122 ------------PSTYKASEVSLS  133 (533)
Q Consensus       122 ------------~~~~~~~~~~~~  133 (533)
                                  -|+-+++++-+|
T Consensus        70 ~~r~h~~~l~~k~sear~~~~l~s   93 (494)
T KOG3588|consen   70 MRRVHLRNLEIKLSEARAKRSLLS   93 (494)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhc
Confidence                        356667766665

>PLN03153 hypothetical protein; Provisional

Probab=97.42  E-value=0.00014  Score=79.95  Aligned_cols=106  Identities=15%  Similarity=0.286  Sum_probs=69.4

Q ss_pred             ccceeeccCCCCCcchhcccCCccCCCcccCCCceeeeHHHHHHhcccHHHHHhhccC-CCCccccchhhhhhcCCcccc
Q psy6218           7 RDKSFYTHGGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYT-THEDVELGRCVQKFAGIPFLS   85 (533)
Q Consensus         7 ~~~~~~g~~~~g~~~~~~~~~~~~~~~yC~~g~G~~~Sr~~l~~~~p~l~~C~~~~~s-~~~D~~lGRCi~~~~~~~C~~   85 (533)
                      +++.|||.     +-|+..-.......|-.||+||+||+.++++|.++++.|...--. .-+|..||.|+.+. ||.=+.
T Consensus       238 tkp~YIGs-----~Se~~~qn~~f~~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~el-GV~LT~  311 (537)
T PLN03153        238 SEMVYVGG-----PSESHSANSYFSHNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITEL-GVPLSR  311 (537)
T ss_pred             CCCEEecc-----cccccccccccccccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHc-CCCcee
Confidence            68999998     555421111122368999999999999999999999999753222 35888999999975 888877


Q ss_pred             ccccccccccccCCcccccccccccceeeccccC
Q psy6218          86 SRNRREDVDMIGESQPLRKQTSVQDKIRLGRQSN  119 (533)
Q Consensus        86 ~~~~~~~~~~~~~~~~f~~a~tv~~~~~~~~~~~  119 (533)
                      +-.|.+ +|+-++-.-|-+|--+-|-+.||--+.
T Consensus       312 ~~gfhQ-~D~~Gd~~G~les~p~~P~vSlHH~~~  344 (537)
T PLN03153        312 EPGFHQ-WDIRGNAHGLLSSHPIAPFVSIHHVEA  344 (537)
T ss_pred             cCCccc-cccCCCcchHhhcCCCCCceeeeeccc
Confidence            733221 111122233444444445566666554

>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins

Probab=97.05  E-value=0.00098  Score=67.48  Aligned_cols=58  Identities=19%  Similarity=0.294  Sum_probs=50.3

Q ss_pred             ccCCCceeeCHHHHHHHHHhHHHhhcc-CCCCchhHHHHHHHHhccCCceeecCCCcccc
Q psy6218         471 CMGGPGVIMSRATLALVAPHIKYCLKN-LYTTHEDVELGRCVQKFAGIPCTWSYEVSITS  529 (533)
Q Consensus       471 ~sGGAGYVLSr~aLrkL~~~~~~C~~~-~~~~~EDV~LG~CL~~~lGV~~t~s~e~~~~~  529 (533)
                      +.||+|+.+|.++++.|.+..+.|... +.....|-.|..|+.+ +||+.|.+..++|+-
T Consensus        10 AfGGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~-lgv~LT~e~g~hQ~D   68 (255)
T PF04646_consen   10 AFGGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAE-LGVPLTKEPGFHQMD   68 (255)
T ss_pred             cccCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hCCCceecCCceeEe
Confidence            459999999999999999999999864 2235689999999998 899999999888864

>KOG2246|consensus

Probab=94.50  E-value=0.034  Score=59.53  Aligned_cols=69  Identities=20%  Similarity=0.413  Sum_probs=53.0

Q ss_pred             ccceeeccCCCCCcchhcccCCccCCCcccCCCceeeeHHHHHHh----cccHHHHHhhccCCCCccccchhhhhhcCCc
Q psy6218           7 RDKSFYTHGGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALV----APHIKYCLKNLYTTHEDVELGRCVQKFAGIP   82 (533)
Q Consensus         7 ~~~~~~g~~~~g~~~~~~~~~~~~~~~yC~~g~G~~~Sr~~l~~~----~p~l~~C~~~~~s~~~D~~lGRCi~~~~~~~   82 (533)
                      .+++|||.     .-+.   .. .++ |=.||+|.++|++.++++    -+..+.|.++-..--||..||+|+.. .||.
T Consensus       196 ~~p~YiG~-----~~~~---~~-~~~-y~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~-~GV~  264 (364)
T KOG2246|consen  196 EKPVYLGY-----RSKS---YF-QNG-YSSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAE-VGVP  264 (364)
T ss_pred             CCcEEecc-----cccc---cc-ccc-cccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHH-hCCC
Confidence            46999999     4441   11 222 999999999999998884    56678899876667899999999976 4667


Q ss_pred             cccc
Q psy6218          83 FLSS   86 (533)
Q Consensus        83 C~~~   86 (533)
                      =+++
T Consensus       265 ~~d~  268 (364)
T KOG2246|consen  265 ATDE  268 (364)
T ss_pred             ccCc
Confidence            7777

>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins

Probab=92.97  E-value=0.1  Score=53.12  Aligned_cols=82  Identities=16%  Similarity=0.329  Sum_probs=55.7

Q ss_pred             cCCCceeeeHHHHHHhcccHHHHHhhccCC-CCccccchhhhhhcCCccccccccccccccccCCcccccccccccceee
Q psy6218          36 MGGPGVIMSRATLALVAPHIKYCLKNLYTT-HEDVELGRCVQKFAGIPFLSSRNRREDVDMIGESQPLRKQTSVQDKIRL  114 (533)
Q Consensus        36 ~~g~G~~~Sr~~l~~~~p~l~~C~~~~~s~-~~D~~lGRCi~~~~~~~C~~~~~~~~~~~~~~~~~~f~~a~tv~~~~~~  114 (533)
                      .||.||.+|+.|.++|.+.+|.|++....- --|.-|-.||.+ +||+=|.+-.|.+ +|.-++---|-.|.-+-|-++|
T Consensus        11 fGGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~-lgv~LT~e~g~hQ-~Di~Gd~~G~~~a~~~~pl~Sl   88 (255)
T PF04646_consen   11 FGGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAE-LGVPLTKEPGFHQ-MDIRGDPSGFLEAHPLAPLVSL   88 (255)
T ss_pred             ccCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hCCCceecCCcee-EeeccCcceeeecCCCCceeee
Confidence            489999999999999999999999764333 479999999965 7888766622211 1111222335555555556677


Q ss_pred             ccccC
Q psy6218         115 GRQSN  119 (533)
Q Consensus       115 ~~~~~  119 (533)
                      |-.+.
T Consensus        89 HH~~~   93 (255)
T PF04646_consen   89 HHWDS   93 (255)
T ss_pred             eehhh
Confidence            76543

>PF13506 Glyco_transf_21: Glycosyl transferase family 21

Probab=91.79  E-value=1.1  Score=42.96  Aligned_cols=104  Identities=18%  Similarity=0.256  Sum_probs=66.9

Q ss_pred             CCCceEEEEcCCccccHHHHHHHHhcCC-CCCCeEEEeecCCCccccc-------------cccCCCCCCCccCCCceee
Q psy6218         414 DKYEWFMRADDDLYVRGERLARMLRSVD-SSKPQFIGQAGRGNQEEFG-------------LLSLEYDENFCMGGPGVIM  479 (533)
Q Consensus       414 ~~~dWFlKvDDDTYVnvdNL~~~L~~~d-pseplYiG~~~~~~~~ey~-------------~~~~~~~~~Y~sGGAGYVL  479 (533)
                      .++|+++..|+|+.|..+-|.+++..+. |.-.+.-|.........+.             .+......+++.| +.+++
T Consensus        30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~G-~~m~~  108 (175)
T PF13506_consen   30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGGAPFAWG-GSMAF  108 (175)
T ss_pred             CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcCCCceec-ceeee
Confidence            4899999999999999999999998775 3333332322211111110             0001134667766 77999


Q ss_pred             CHHHHHHHHHhHHHhhccCCCCchhHHHHHHHHhccCCceeecC
Q psy6218         480 SRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWSY  523 (533)
Q Consensus       480 Sr~aLrkL~~~~~~C~~~~~~~~EDV~LG~CL~~~lGV~~t~s~  523 (533)
                      .+++++++-- +..-. +  .-.||..+|+.+.+ .|....-+.
T Consensus       109 rr~~L~~~GG-~~~l~-~--~ladD~~l~~~~~~-~G~~v~~~~  147 (175)
T PF13506_consen  109 RREALEEIGG-FEALA-D--YLADDYALGRRLRA-RGYRVVLSP  147 (175)
T ss_pred             EHHHHHHccc-HHHHh-h--hhhHHHHHHHHHHH-CCCeEEEcc
Confidence            9999998742 11111 1  46899999999998 687755444

>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=90.88  E-value=2.1  Score=40.90  Aligned_cols=148  Identities=10%  Similarity=0.046  Sum_probs=75.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhhhccCCCcEEEEecCCCCCCCCC---CCCC-cEEecCCCCCC-----CchHHHHHHHHHH
Q psy6218         338 VGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAAR---PDLP-LVKLRGVDDSY-----PPQKKSFLMLQYM  408 (533)
Q Consensus       338 I~V~Tsp~~~~tRr~AIR~TWgr~~~~rvvFfsg~~~~i~~~d---~~lp-vV~L~~~dD~Y-----nlt~Kt~~~L~~l  408 (533)
                      |.|.+=+... .|+..+.+...+..- .+.||.+..+......   ..++ ...........     -.+..++.+|+.+
T Consensus         4 i~vInL~~~~-~Rr~~~~~~~~~~~~-~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~~~~~lt~gEiGC~lSH~~~w~~~   81 (200)
T PF01755_consen    4 IYVINLDRST-ERRERIQQQLAKLGI-NFEFFDAVDGRDLSEDELFRRYDPELFKKRYGRPLTPGEIGCALSHIKAWQRI   81 (200)
T ss_pred             EEEEECCCCH-HHHHHHHHHHHHcCC-ceEEEEeecccccchHHHHHHhhhhhhhccccccCCcceEeehhhHHHHHHHH
Confidence            3455556554 488888777766543 6778866654211000   0000 00000000000     0256677788888


Q ss_pred             HHHhCCCCceEEEEcCCccccHHHHHHHHh----cCCCCCCeEEEeecCCC----------ccccc----cccC------
Q psy6218         409 WERYGDKYEWFMRADDDLYVRGERLARMLR----SVDSSKPQFIGQAGRGN----------QEEFG----LLSL------  464 (533)
Q Consensus       409 ~e~~~~~~dWFlKvDDDTYVnvdNL~~~L~----~~dpseplYiG~~~~~~----------~~ey~----~~~~------  464 (533)
                      .+.   +.++.+...||+++..+ +.+.|.    .....+-++.|......          ...+.    ....      
T Consensus        82 v~~---~~~~~lIlEDDv~~~~~-f~~~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (200)
T PF01755_consen   82 VDS---GLEYALILEDDVIFDPD-FKEFLEEILSHIPDWDFLRLGGWKDNSYSPGDIFLSRLSTFLSRSKRYKRKPIPPF  157 (200)
T ss_pred             HHc---CCCeEEEEecccccccc-HHHHHHHHHhhcccccchhhccccccccccccccceeeeehhhhhhhcccCccccc
Confidence            763   68999999999999744 333333    32222233443211100          00000    0000      


Q ss_pred             -----CCCCCCccCCCceeeCHHHHHHHHHhH
Q psy6218         465 -----EYDENFCMGGPGVIMSRATLALVAPHI  491 (533)
Q Consensus       465 -----~~~~~Y~sGGAGYVLSr~aLrkL~~~~  491 (533)
                           .....+..|..||++|+.++++|++..
T Consensus       158 ~~~~~~~~~~~~~~t~aY~Is~~gA~kLL~~~  189 (200)
T PF01755_consen  158 GSRKLIRPAKYPYGTCAYLISRKGARKLLEAS  189 (200)
T ss_pred             CCceEEeecCCCCcceeeeeCHHHHHHHHHhC
Confidence                 001234456679999999999999764

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=88.32  E-value=1.8  Score=41.41  Aligned_cols=109  Identities=20%  Similarity=0.261  Sum_probs=59.9

Q ss_pred             HHHHHHHHhCCCCceEEEEcCCccccHHHHHHHHhcC-CCCCCeEEEeecCCCcc---------ccccc----c---CCC
Q psy6218         404 MLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSV-DSSKPQFIGQAGRGNQE---------EFGLL----S---LEY  466 (533)
Q Consensus       404 ~L~~l~e~~~~~~dWFlKvDDDTYVnvdNL~~~L~~~-dpseplYiG~~~~~~~~---------ey~~~----~---~~~  466 (533)
                      .+.+..+..  +++|++..|||+.+..+-|..+++.+ ++.-....|........         .+...    .   ...
T Consensus        77 a~n~~~~~~--~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (228)
T PF13641_consen   77 ALNEALAAA--RGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSGRRAL  154 (228)
T ss_dssp             HHHHHHHH-----SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT-B--
T ss_pred             HHHHHHHhc--CCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhhhccc
Confidence            456666654  59999999999999999999988877 45444444443211110         00000    0   011


Q ss_pred             CCCCccCCCceeeCHHHHHHHHHhHHHhhccCCCCchhHHHHHHHHhccCCceeec
Q psy6218         467 DENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTTHEDVELGRCVQKFAGIPCTWS  522 (533)
Q Consensus       467 ~~~Y~sGGAGYVLSr~aLrkL~~~~~~C~~~~~~~~EDV~LG~CL~~~lGV~~t~s  522 (533)
                      ...++. |++.++.+++++++... +.     ....||..++.-+.. .|......
T Consensus       155 ~~~~~~-G~~~~~rr~~~~~~g~f-d~-----~~~~eD~~l~~r~~~-~G~~~~~~  202 (228)
T PF13641_consen  155 GVAFLS-GSGMLFRRSALEEVGGF-DP-----FILGEDFDLCLRLRA-AGWRIVYA  202 (228)
T ss_dssp             --S-B---TEEEEEHHHHHHH-S---S-----SSSSHHHHHHHHHHH-TT--EEEE
T ss_pred             ceeecc-CcEEEEEHHHHHHhCCC-CC-----CCcccHHHHHHHHHH-CCCcEEEE
Confidence            123344 59999999999999632 11     244599999988887 68776543

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=82.61  E-value=4.1  Score=36.09  Aligned_cols=90  Identities=18%  Similarity=0.221  Sum_probs=61.7

Q ss_pred             CCceEEEEcCCccccHHHHHHHHhcCCCCC-CeEEEeecCCCccccccccCCCCCCCccCCCceeeCHHHHHHHHHhHHH
Q psy6218         415 KYEWFMRADDDLYVRGERLARMLRSVDSSK-PQFIGQAGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKY  493 (533)
Q Consensus       415 ~~dWFlKvDDDTYVnvdNL~~~L~~~dpse-plYiG~~~~~~~~ey~~~~~~~~~~Y~sGGAGYVLSr~aLrkL~~~~~~  493 (533)
                      +.+|++..|||.++..+.|..+++.+.... -..++..                   + .|+..++++++++++...-..
T Consensus        74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~~~~  133 (166)
T cd04186          74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------V-SGAFLLVRREVFEEVGGFDED  133 (166)
T ss_pred             CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------C-ceeeEeeeHHHHHHcCCCChh
Confidence            689999999999999998988887543322 1222221                   2 358899999999987532122


Q ss_pred             hhccCCCCchhHHHHHHHHhccCCceeecCCCcccc
Q psy6218         494 CLKNLYTTHEDVELGRCVQKFAGIPCTWSYEVSITS  529 (533)
Q Consensus       494 C~~~~~~~~EDV~LG~CL~~~lGV~~t~s~e~~~~~  529 (533)
                      .    ....||..+...+.. .|.+....++..-+|
T Consensus       134 ~----~~~~eD~~~~~~~~~-~g~~i~~~~~~~~~h  164 (166)
T cd04186         134 F----FLYYEDVDLCLRARL-AGYRVLYVPQAVIYH  164 (166)
T ss_pred             h----hccccHHHHHHHHHH-cCCeEEEccceEEEe
Confidence            1    125689999887776 588877776654444

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	533
2j0a_A	280	Beta-1,3-N-acetylglucosaminyltransferase manic FR;	8e-41
2j0a_A	280	Beta-1,3-N-acetylglucosaminyltransferase manic FR;	8e-08

>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A* Length = 280

 Score =  147 bits (372), Expect = 8e-41
 Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 10/196 (5%)

Query: 336 LFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLPLVKLRGVDDSY 395
           +F+ V T  ++  +R   + DTW   I  +   FT         R   P + +      +
Sbjct: 15  IFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQERL-GPHLVVTQCSAEH 73

Query: 396 PPQKKSFLMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGN 455
                S  M             WF   DDD YV  + L ++L++    +  ++G+     
Sbjct: 74  SHPALSCKMAAEFDAFLVSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNR 133

Query: 456 QEE-----FGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYC----LKNLYTTHEDVE 506
                       +      F  GG G  ++R     + P            L    +D  
Sbjct: 134 PIHASELQSKQRTKLVRFWFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCT 193

Query: 507 LGRCVQKFAGIPCTWS 522
           +G  ++   G     S
Sbjct: 194 VGYIIECKLGGRLQPS 209

>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A* Length = 280

 Score = 52.8 bits (126), Expect = 8e-08
 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 4/78 (5%)

Query: 9   KSFYTHGGRGNQEEFGLLSLEYDENFCMGGPGVIMSRATLALVAPHIKYC----LKNLYT 64
           K         ++ +    +      F  GG G  ++R     + P            L  
Sbjct: 128 KPSLNRPIHASELQSKQRTKLVRFWFATGGAGFCINRQLALKMVPWASGSHFVDTSALIR 187

Query: 65  THEDVELGRCVQKFAGIP 82
             +D  +G  ++   G  
Sbjct: 188 LPDDCTVGYIIECKLGGR 205

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	533
2j0a_A	280	Beta-1,3-N-acetylglucosaminyltransferase manic FR;	99.96
2j0a_A	280	Beta-1,3-N-acetylglucosaminyltransferase manic FR;	98.81

>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*

Probab=99.96  E-value=7.1e-30  Score=257.90  Aligned_cols=188  Identities=19%  Similarity=0.242  Sum_probs=136.8

Q ss_pred             CCCceEEEEEEcCCCChHHHHHHHHHhhhccCCCcEEEEecCCCCCCCCCCCCC-----cEEecCCCCC--C-CchHHHH
Q psy6218         331 SESGLLFVGVMTANSYLNTRATSVYDTWARDIPGRVAFFTSESSTLPAARPDLP-----LVKLRGVDDS--Y-PPQKKSF  402 (533)
Q Consensus       331 ~~~~~LlI~V~Tsp~~~~tRr~AIR~TWgr~~~~rvvFfsg~~~~i~~~d~~lp-----vV~L~~~dD~--Y-nlt~Kt~  402 (533)
                      ....+|+|+|+|+++++.+|+++|++||+++++..+.||++..+      +.++     .+...++.+.  + +++.|+.
T Consensus        10 ~~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~~~fifsd~~d------~~l~~~~~~~~~~~~~~~~~~~~~l~~K~~   83 (280)
T 2j0a_A           10 LQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPD------ERLQERLGPHLVVTQCSAEHSHPALSCKMA   83 (280)
T ss_dssp             CCGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGGGEEEEESSCC------HHHHHHHGGGEEECCC-------CCCHHHH
T ss_pred             CCcccEEEEEECcHHHHHHHHHHHHHHHhccCCCceEEEcCCCc------ccccccccccceeccccccccccchHHHHH
Confidence            35679999999999999999999999999999645555776553      2222     1222233222  2 4688988


Q ss_pred             HHHHHHHHHhCCCCceEEEEcCCccccHHHHHHHHhcCCCCCCeEEEeecCCCcc---cccc--ccCCCCCCCccCCCce
Q psy6218         403 LMLQYMWERYGDKYEWFMRADDDLYVRGERLARMLRSVDSSKPQFIGQAGRGNQE---EFGL--LSLEYDENFCMGGPGV  477 (533)
Q Consensus       403 ~~L~~l~e~~~~~~dWFlKvDDDTYVnvdNL~~~L~~~dpseplYiG~~~~~~~~---ey~~--~~~~~~~~Y~sGGAGY  477 (533)
                      ..+++.++   +++|||+|+||||||+++||+++|+.+||++++|+|++....+.   ++..  .......+||+||+||
T Consensus        84 ~~~~~~l~---~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~~~~~~~~~~~~~~~~~y~~GGaG~  160 (280)
T 2j0a_A           84 AEFDAFLV---SGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASELQSKQRTKLVRFWFATGGAGF  160 (280)
T ss_dssp             HHHHHHHH---HTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-------------------CCEECGGGCE
T ss_pred             HHHHHHhC---CCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccccccccCccccccccccCcccCCCEE
Confidence            77776542   48999999999999999999999999999999999998754321   1100  0011246899999999


Q ss_pred             eeCHHHHHHHHHhHHHhhc----cCCCCchhHHHHHHHHhccCCceeecCCCcc
Q psy6218         478 IMSRATLALVAPHIKYCLK----NLYTTHEDVELGRCVQKFAGIPCTWSYEVSI  527 (533)
Q Consensus       478 VLSr~aLrkL~~~~~~C~~----~~~~~~EDV~LG~CL~~~lGV~~t~s~e~~~  527 (533)
                      |||++++++|++....|.-    ......||++||+|+++.+||+++++..+++
T Consensus       161 vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~  214 (280)
T 2j0a_A          161 CINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHS  214 (280)
T ss_dssp             EEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCC
T ss_pred             EECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccC
Confidence            9999999999987655521    1234579999999999338999999988775

>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*

Probab=98.81  E-value=1.2e-09  Score=110.08  Aligned_cols=82  Identities=13%  Similarity=0.092  Sum_probs=57.5

Q ss_pred             ccceeeccCCCCCcchhcc-c----CCccCCCcccCCCceeeeHHHHHHhcccHHHHHhhccCC------CCccccchhh
Q psy6218           7 RDKSFYTHGGRGNQEEFGL-L----SLEYDENFCMGGPGVIMSRATLALVAPHIKYCLKNLYTT------HEDVELGRCV   75 (533)
Q Consensus         7 ~~~~~~g~~~~g~~~~~~~-~----~~~~~~~yC~~g~G~~~Sr~~l~~~~p~l~~C~~~~~s~------~~D~~lGRCi   75 (533)
                      ++++|||....++|.+... +    .......||+||+|++|||+++++|.++.+.|  +.++.      .+|++||+|+
T Consensus       121 ~~~~YiG~~~~~~~~~~~~~~~~~~~~~~~~~y~~GGaG~vlSr~~l~~l~~~~~~~--~~~~~~~~~~~~dD~~lG~Cl  198 (280)
T 2j0a_A          121 DRDVYVGKPSLNRPIHASELQSKQRTKLVRFWFATGGAGFCINRQLALKMVPWASGS--HFVDTSALIRLPDDCTVGYII  198 (280)
T ss_dssp             TSCCEEECEEC-------------------CCEECGGGCEEEEHHHHHHHHHHHTTC--TTSCCTTTTTSCHHHHHHHHH
T ss_pred             CCCEEEEEeccCccccccccCccccccccccCcccCCCEEEECHHHHHHHHHhhccc--ccccccccCCCCccHHHHHHH
Confidence            4699999976655432100 0    01124579999999999999999999998888  33333      3599999999


Q ss_pred             hhhcCCccccccccc
Q psy6218          76 QKFAGIPFLSSRNRR   90 (533)
Q Consensus        76 ~~~~~~~C~~~~~~~   90 (533)
                      .+.+||.|+.+..|.
T Consensus       199 ~~~lGV~~~~~~~Fh  213 (280)
T 2j0a_A          199 ECKLGGRLQPSPLFH  213 (280)
T ss_dssp             HHTTCCCEEECTTCC
T ss_pred             HhcCCCCceeccccc
Confidence            999999999994443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00