Psyllid ID: psy6230

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------70

MSERQVYLIPDEHTYCQVELTPDQVYLIEFFCIVFFSIYLLSVPSMYLLLILYSLINLNVVSWGTREVAVKKTKKVDLTSTPDQVYLIPGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQLSG

cccccEEEccccccEEEEEEcccEEEEEEcEEEEEEEccccccccHHHHHHHHHHHHHHccccccHHHHHccccEEEEccccHHHHHHcccEEEccccccccEEEEEEccccccccccccccccccccEEEccccccccccccccEEEEEcccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccEEEccEEEEEEEEEEEEEEcccEEEEEEcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHcccccEEEccccccccEEEEEEccccccccccccccccccccEEEccccccccccccccEEEEEcccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEccccHHHccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcc

ccccEEEEEcccccEEEEEEccccEEEEEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEcccHHHcccccEccccHHHHHHHccHHHEcccccccEEEEEEcccHHHHHHccccccccccEEEEccccEcccccccccEEEEEHHHHHHcEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccEEcHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccEEEEccccEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEcccEEEEEEcHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHcEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHcHHHHccccccccEEEEEEcccHHHHHHccccccccccEEEEccccEcccccccccEEEEEHHHHHHcEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEcHHHHHccccHHHHHHHHHHHHcccccccccHHccccccHHHHHHHHHHHHHHHHHHccc

mserqvylipdehtycqveltpdQVYLIEFFCIVFFSIYLLSVPSMYLLLILYSLINLNVVSWGTREVAVKKtkkvdltstpdqvylipglramfdetypdpvrvvcvgtpveqlesepesqagmetsvefcGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVkntlsnpntadskALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDagsntkiprlrsfefglkrqtspyhvkshgysyiepcveicawtggrsegipgsarrrpimsnHTATHILNHALrfvlgpeadqkgslvapdrlrfdftnkgamtaDQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAmfdetypdpvrvvcvgtpveqlesepesqagmetsvefcGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVkntlsnpntadskALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTdimggkgggkaesaqasgpnyenaplVLSKARDYASQQLSG

mserqvylipdehtycQVELTPDQVYLIEFFCIVFFSIYLLSVPSMYLLLILYSLINLNVVSWGTREVAvkktkkvdltstpdqvyliPGLRAMFDETYPDPVRVVCVGTPVEQlesepesqagMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVlnvkntlsnpntadskalskKIIDITEEIakatlpywkkedLRNLLKTMKKSLDEAERLQKaahaskvldrvkslveerkadkfiveildagsntkiprlRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIvqtkkpvyakLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQlesepesqagMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVlnvkntlsnpntadskalskKIIDITEEIakatlpywkkedLRNLLKTMKKSLDEAERLQKaahaskvldrvKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQLSG

MSERQVYLIPDEHTYCQVELTPDQVYLIEFFCIVFFSIYLLSVPsmylllilyslinlnvvSWGTREVAVKKTKKVDLTSTPDQVYLIPGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQLSG

*****VYLIPDEHTYCQVELTPDQVYLIEFFCIVFFSIYLLSVPSMYLLLILYSLINLNVVSWGTREVAVKKTKKVDLTSTPDQVYLIPGLRAMFDETYPDPVRVVCVGTPV***************SVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNT***********LSKKIIDITEEIAKATLPYWKKEDLRNLLK*********************LDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGGRS***********IMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPV***************SVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNT***********LSKKIIDITEEIAKATLPYWKKEDLRNLLK*********************LDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMG*************************************

****QVYLIPDEHTYCQVELTPDQVYLIEFFCIVFFSIYLLSVPSMYLLLILYSLINLNVVSWGTREVAVKKTKKVDLTSTPDQVYLIPGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTL***NTA***ALSKKIIDITEEIAKA*****************KKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKN****************IIDITEEIAKATLPYWKKED*********************************LVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQLS*

MSERQVYLIPDEHTYCQVELTPDQVYLIEFFCIVFFSIYLLSVPSMYLLLILYSLINLNVVSWGTREVAVKKTKKVDLTSTPDQVYLIPGLRAMFDETYPDPVRVVCVGTPVE*************TSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVE*************TSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGG**************NYENAPLVLSKA**********

***RQVYLIPDEHTYCQVELTPDQVYLIEFFCIVFFSIYLLSVPSMYLLLILYSLINLNVVSWGTREVAVKKTKKVDLTSTPDQVYLIPGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQLS*

iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSERQVYLIPDEHTYCQVELTPDQVYLIEFFCIVFFSIYLLSVPSMYLLLILYSLINLNVVSWGTREVAVKKTKKVDLTSTPDQVYLIPGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKxxxxxxxxxxxxxxxxxxxxxxxxAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKxxxxxxxxxxxxxxxxxxxxxxxxAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQLSG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		699	2.2.26 [Sep-21-2011]
Q9VLM8		966	Alanine--tRNA ligase, cyt	yes	N/A	0.529	0.383	0.555	1e-112
P21894		967	Alanine--tRNA ligase, cyt	N/A	N/A	0.532	0.384	0.568	1e-103
Q5RC02		968	Alanine--tRNA ligase, cyt	yes	N/A	0.526	0.380	0.513	4e-99
Q8CFX8		968	Alanine--tRNA ligase, cyt	N/A	N/A	0.526	0.380	0.502	6e-98
Q8BGQ7		968	Alanine--tRNA ligase, cyt	yes	N/A	0.526	0.380	0.502	1e-97
P49588		968	Alanine--tRNA ligase, cyt	yes	N/A	0.526	0.380	0.502	2e-97
P50475		968	Alanine--tRNA ligase, cyt	yes	N/A	0.526	0.380	0.497	1e-96
O01541		968	Alanine--tRNA ligase, cyt	yes	N/A	0.515	0.371	0.498	1e-91
Q5A8K2		969	Alanine--tRNA ligase OS=C	N/A	N/A	0.483	0.348	0.376	3e-55
O13914		959	Alanine--tRNA ligase OS=S	yes	N/A	0.512	0.373	0.339	1e-50

>sp\|Q9VLM8\|SYAC_DROME Alanine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster GN=Aats-ala PE=2 SV=1	Back alignment and function desciption

 Score =  406 bits (1043), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/371 (55%), Positives = 271/371 (73%), Gaps = 1/371 (0%)

Query: 329 RRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAE 388
           RR   M NH+ATH LNH L  VLG + +QKGSLV P++LRFDF +K AMT +QV K E  
Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQL 655

Query: 389 VIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAG 448
              +V    P+YAK   LA AKKI+GLR++FDE YPDPVRV+  G PV++LE  P+S+AG
Sbjct: 656 TKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDSEAG 715

Query: 449 METSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVL 508
            +TSVEFCGGTHL  + H+ DF ISSEEAIAKGIRRIVAL+G EA KA+KK++  E E++
Sbjct: 716 EQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQEIV 775

Query: 509 NVKNTLSNPNTA-DSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQ 567
            +K T+ N  +  DSK+  K+I+++TE+I+ AT+PY KK+++RNLLK +KK+LD+ ER  
Sbjct: 776 RLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKERAL 835

Query: 568 KAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVD 627
           +AA +  V++R K+L E       +VE L+A +NTKALDAALKQV++  P  AAMF+SVD
Sbjct: 836 RAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLSVD 895

Query: 628 EAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLS 687
             +KKIFCLSSVPK AV  GL A +WV++++  +GGKGGGK ESAQASG NYE    ++ 
Sbjct: 896 ADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATLGGKGGGKPESAQASGTNYEKVDEIVQ 955

Query: 688 KARDYASQQLS 698
            A  +A  +LS
Sbjct: 956 LASKFAQSKLS 966

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7

>sp\|P21894\|SYAC_BOMMO Alanine--tRNA ligase, cytoplasmic OS=Bombyx mori PE=1 SV=1	Back alignment and function description

>sp\|Q5RC02\|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1	Back alignment and function description

>sp\|Q8CFX8\|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars PE=2 SV=1	Back alignment and function description

>sp\|Q8BGQ7\|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1	Back alignment and function description

>sp\|P49588\|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2	Back alignment and function description

>sp\|P50475\|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3	Back alignment and function description

>sp\|O01541\|SYAC_CAEEL Alanine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=aars-2 PE=2 SV=1	Back alignment and function description

>sp\|Q5A8K2\|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ALA1 PE=1 SV=1	Back alignment and function description

>sp\|O13914\|SYA_SCHPO Alanine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ala1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		699
17862882		540	SD01519p [Drosophila melanogaster]	0.529	0.685	0.555	1e-111
307187766		968	Alanyl-tRNA synthetase, cytoplasmic [Cam	0.532	0.384	0.546	1e-111
357612410		530	alanyl-tRNA synthetase, cytoplasmic [Dan	0.645	0.850	0.492	1e-111
195438477		967	GK24844 [Drosophila willistoni] gi\|19416	0.529	0.382	0.563	1e-111
242012157		983	Alanyl-tRNA synthetase, putative [Pedicu	0.529	0.376	0.564	1e-111
24582809		966	Alanyl-tRNA synthetase, isoform A [Droso	0.529	0.383	0.555	1e-110
17861846		966	GM03058p [Drosophila melanogaster]	0.529	0.383	0.555	1e-110
350409807		1194	PREDICTED: alanyl-tRNA synthetase, cytop	0.530	0.310	0.534	1e-109
194759416		966	GF14684 [Drosophila ananassae] gi\|190615	0.529	0.383	0.549	1e-109
340718527		1193	PREDICTED: alanyl-tRNA synthetase, cytop	0.530	0.310	0.537	1e-109

>gi\|17862882\|gb\|AAL39918.1\| SD01519p [Drosophila melanogaster]	Back alignment and taxonomy information

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/371 (55%), Positives = 271/371 (73%), Gaps = 1/371 (0%)

Query: 329 RRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAE 388
           RR   M NH+ATH LNH L  VLG + +QKGSLV P++LRFDF +K AMT +QV K E  
Sbjct: 170 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQL 229

Query: 389 VIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAG 448
              +V    P+YAK   LA AKKI+GLR++FDE YPDPVRV+  G PV++LE  P+S+AG
Sbjct: 230 TKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDSEAG 289

Query: 449 METSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVL 508
            +TSVEFCGGTHL  + H+ DF ISSEEAIAKGIRRIVAL+G EA KA+KK++  E E++
Sbjct: 290 EQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQEIV 349

Query: 509 NVKNTLSNPNTA-DSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQ 567
            +K T+ N  +  DSK+  K+I+++TE+I+ AT+PY KK+++RNLLK +KK+LD+ ER  
Sbjct: 350 RLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKERAL 409

Query: 568 KAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVD 627
           +AA +  V++R K+L E       +VE L+A +NTKALDAALKQV++  P  AAMF+SVD
Sbjct: 410 RAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLSVD 469

Query: 628 EAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLS 687
             +KKIFCLSSVPK AV  GL A +WV++++  +GGKGGGK ESAQASG NYE    ++ 
Sbjct: 470 ADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATLGGKGGGKPESAQASGTNYEKVDEIVQ 529

Query: 688 KARDYASQQLS 698
            A  +A  +LS
Sbjct: 530 LASKFAQSKLS 540

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|307187766\|gb\|EFN72738.1\| Alanyl-tRNA synthetase, cytoplasmic [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|357612410\|gb\|EHJ67979.1\| alanyl-tRNA synthetase, cytoplasmic [Danaus plexippus]	Back alignment and taxonomy information

>gi\|195438477\|ref\|XP_002067163.1\| GK24844 [Drosophila willistoni] gi\|194163248\|gb\|EDW78149.1\| GK24844 [Drosophila willistoni]	Back alignment and taxonomy information

>gi\|242012157\|ref\|XP_002426803.1\| Alanyl-tRNA synthetase, putative [Pediculus humanus corporis] gi\|212510999\|gb\|EEB14065.1\| Alanyl-tRNA synthetase, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi|24582809|ref|NP_523511.2| Alanyl-tRNA synthetase, isoform A [Drosophila melanogaster] gi|45552267|ref|NP_995656.1| Alanyl-tRNA synthetase, isoform B [Drosophila melanogaster] gi|75027177|sp|Q9VLM8.1|SYAC_DROME RecName: Full=Alanine--tRNA ligase, cytoplasmic; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS gi|7297398|gb|AAF52657.1| Alanyl-tRNA synthetase, isoform A [Drosophila melanogaster] gi|45445248|gb|AAS64737.1| Alanyl-tRNA synthetase, isoform B [Drosophila melanogaster]

Back alignment and taxonomy information

>gi\|17861846\|gb\|AAL39400.1\| GM03058p [Drosophila melanogaster]	Back alignment and taxonomy information

>gi\|350409807\|ref\|XP_003488850.1\| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|194759416\|ref\|XP_001961945.1\| GF14684 [Drosophila ananassae] gi\|190615642\|gb\|EDV31166.1\| GF14684 [Drosophila ananassae]	Back alignment and taxonomy information

>gi\|340718527\|ref\|XP_003397717.1\| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Bombus terrestris]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		699
FB\|FBgn0027094		966	Aats-ala "Alanyl-tRNA syntheta	0.529	0.383	0.555	6.7e-104
UNIPROTKB\|F1P7C2		968	AARS "Uncharacterized protein"	0.525	0.379	0.509	8.1e-92
MGI\|MGI:2384560		968	Aars "alanyl-tRNA synthetase"	0.525	0.379	0.504	2.7e-91
UNIPROTKB\|P49588		968	AARS "Alanine--tRNA ligase, cy	0.525	0.379	0.504	5.7e-91
RGD\|1304832		968	Aars "alanyl-tRNA synthetase"	0.525	0.379	0.498	1.2e-90
UNIPROTKB\|A6QLT9		968	AARS "AARS protein" [Bos tauru	0.525	0.379	0.498	2.5e-90
ZFIN\|ZDB-GENE-030131-3663		991	aars "alanyl-tRNA synthetase"	0.526	0.371	0.489	5.3e-88
WB\|WBGene00000197		968	aars-2 [Caenorhabditis elegans	0.590	0.426	0.462	4.3e-86
UNIPROTKB\|J9P755		952	AARS "Uncharacterized protein"	0.446	0.327	0.525	3.2e-81
UNIPROTKB\|F1P5J5		916	AARS "Uncharacterized protein"	0.444	0.339	0.514	8.5e-81

FB\|FBgn0027094 Aats-ala "Alanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 206/371 (55%), Positives = 271/371 (73%)

Query:   329 RRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAE 388
             RR   M NH+ATH LNH L  VLG + +QKGSLV P++LRFDF +K AMT +QV K E  
Sbjct:   596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQL 655

Query:   389 VIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAG 448
                +V    P+YAK   LA AKKI+GLR++FDE YPDPVRV+  G PV++LE  P+S+AG
Sbjct:   656 TKEMVYKNVPIYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDSEAG 715

Query:   449 METSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEVL 508
              +TSVEFCGGTHL  + H+ DF ISSEEAIAKGIRRIVAL+G EA KA+KK++  E E++
Sbjct:   716 EQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQEIV 775

Query:   509 NVKNTLSNPNTA-DSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQ 567
              +K T+ N  +  DSK+  K+I+++TE+I+ AT+PY KK+++RNLLK +KK+LD+ ER  
Sbjct:   776 RLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKERAL 835

Query:   568 KAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVD 627
             +AA +  V++R K+L E       +VE L+A +NTKALDAALKQV++  P  AAMF+SVD
Sbjct:   836 RAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLSVD 895

Query:   628 EAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLS 687
               +KKIFCLSSVPK AV  GL A +WV++++  +GGKGGGK ESAQASG NYE    ++ 
Sbjct:   896 ADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATLGGKGGGKPESAQASGTNYEKVDEIVQ 955

Query:   688 KARDYASQQLS 698
              A  +A  +LS
Sbjct:   956 LASKFAQSKLS 966

GO:0006419 "alanyl-tRNA aminoacylation" evidence=ISS

GO:0004813 "alanine-tRNA ligase activity" evidence=ISS;NAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB\|F1P7C2 AARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:2384560 Aars "alanyl-tRNA synthetase" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|P49588 AARS "Alanine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1304832 Aars "alanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QLT9 AARS "AARS protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-3663 aars "alanyl-tRNA synthetase" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

WB\|WBGene00000197 aars-2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P755 AARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P5J5 AARS "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RC02	SYAC_PONAB	6, ., 1, ., 1, ., 7	0.5135	0.5264	0.3801	yes	N/A
Q8BGQ7	SYAC_MOUSE	6, ., 1, ., 1, ., 7	0.5027	0.5264	0.3801	yes	N/A
Q9VLM8	SYAC_DROME	6, ., 1, ., 1, ., 7	0.5552	0.5293	0.3830	yes	N/A
P49588	SYAC_HUMAN	6, ., 1, ., 1, ., 7	0.5027	0.5264	0.3801	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.7	LOW CONFIDENCE prediction!
3rd Layer	6.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		699
PLN02900		936	PLN02900, PLN02900, alanyl-tRNA synthetase	4e-96
PRK00252		865	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	2e-71
COG0013		879	COG0013, AlaS, Alanyl-tRNA synthetase [Translation	1e-69
TIGR00344		851	TIGR00344, alaS, alanine--tRNA ligase	2e-51
PLN02900		936	PLN02900, PLN02900, alanyl-tRNA synthetase	6e-31
PRK13902		900	PRK13902, alaS, alanyl-tRNA synthetase; Provisiona	6e-27
TIGR03683		902	TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase	1e-26
PRK01584		594	PRK01584, PRK01584, alanyl-tRNA synthetase; Provis	1e-25
COG0013		879	COG0013, AlaS, Alanyl-tRNA synthetase [Translation	7e-19
PRK00252		865	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	1e-16
TIGR00344		851	TIGR00344, alaS, alanine--tRNA ligase	5e-16
COG2872		241	COG2872, COG2872, Predicted metal-dependent hydrol	8e-12
pfam02272		69	pfam02272, DHHA1, DHHA1 domain	6e-08
pfam07973		44	pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt	1e-07
pfam07973		44	pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt	1e-07
smart00863		43	smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn	2e-07
smart00863		43	smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn	2e-07
PRK01584		594	PRK01584, PRK01584, alanyl-tRNA synthetase; Provis	8e-05
PRK13902		900	PRK13902, alaS, alanyl-tRNA synthetase; Provisiona	2e-04
pfam10153		114	pfam10153, DUF2361, Uncharacterized conserved prot	0.004

>gnl\|CDD\|215487 PLN02900, PLN02900, alanyl-tRNA synthetase	Back alignment and domain information

 Score =  317 bits (814), Expect = 4e-96
 Identities = 139/369 (37%), Positives = 194/369 (52%), Gaps = 24/369 (6%)

Query: 328 ARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEA 387
            RRR I  NHTATH+LN AL+ VLG   DQKGSLVA ++LRFDF++   MT +++++ E+
Sbjct: 589 DRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVES 648

Query: 388 EVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQA 447
            V   +    PV AK   LADAK+I GLRA+F E YPDPVRVV VG              
Sbjct: 649 LVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGVY----------- 697

Query: 448 GMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATKAIKKAQVIETEV 507
               S+E CGGTH++       F + SEE IAKGIRRI A++G  A +AI  A  +E E 
Sbjct: 698 ----SMELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERE- 752

Query: 508 LNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKSLDEAERLQ 567
                 L +    +   L KK+  +   +  A +P  KKE++R  +  ++K L  A++  
Sbjct: 753 ------LDSALKVEGSDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEA 806

Query: 568 KAAHASKVLDRVKSLVEERKAD--KFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFIS 625
            A  A   + +   L  +  +     +V  LD G +  AL  A ++V       AA+ +S
Sbjct: 807 AALRAKLAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLS 866

Query: 626 VDEAAKKIFCLSSVPKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLV 685
            DE   K+  +++VP   V  GL A  W+  +  + GG GGGK   AQ  G + E     
Sbjct: 867 SDEEKGKVSLVAAVPPGVVKKGLKAGKWLGAIAKLCGGGGGGKPGFAQGQGRDAEKLDAA 926

Query: 686 LSKARDYAS 694
           L KAR +A 
Sbjct: 927 LEKARAFAV 935

Length = 936

>gnl\|CDD\|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|232931 TIGR00344, alaS, alanine--tRNA ligase	Back alignment and domain information

>gnl\|CDD\|215487 PLN02900, PLN02900, alanyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|232931 TIGR00344, alaS, alanine--tRNA ligase	Back alignment and domain information

>gnl\|CDD\|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|216955 pfam02272, DHHA1, DHHA1 domain	Back alignment and domain information

>gnl\|CDD\|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain	Back alignment and domain information

>gnl\|CDD\|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain	Back alignment and domain information

>gnl\|CDD\|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain	Back alignment and domain information

>gnl\|CDD\|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain	Back alignment and domain information

>gnl\|CDD\|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|150786 pfam10153, DUF2361, Uncharacterized conserved protein (DUF2361)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		699
COG0013		879	AlaS Alanyl-tRNA synthetase [Translation, ribosoma	100.0
PLN02900		936	alanyl-tRNA synthetase	100.0
KOG0188\|consensus		895		100.0
TIGR03683		902	A-tRNA_syn_arch alanyl-tRNA synthetase. This famil	100.0
PRK00252		865	alaS alanyl-tRNA synthetase; Reviewed	100.0
PRK13902		900	alaS alanyl-tRNA synthetase; Provisional	100.0
TIGR00344		851	alaS alanine--tRNA ligase. The model describes ala	100.0
COG2872		241	Predicted metal-dependent hydrolases related to al	100.0
PLN02961		223	alanine-tRNA ligase	100.0
KOG2105\|consensus		415		100.0
PRK01584		594	alanyl-tRNA synthetase; Provisional	99.97
KOG0188\|consensus		895		99.96
COG0013		879	AlaS Alanyl-tRNA synthetase [Translation, ribosoma	99.88
PLN02900		936	alanyl-tRNA synthetase	99.85
PRK12305		575	thrS threonyl-tRNA synthetase; Reviewed	99.8
PLN02837		614	threonine-tRNA ligase	99.78
PRK00413		638	thrS threonyl-tRNA synthetase; Reviewed	99.77
PRK13902		900	alaS alanyl-tRNA synthetase; Provisional	99.74
TIGR03683		902	A-tRNA_syn_arch alanyl-tRNA synthetase. This famil	99.73
PRK00252		865	alaS alanyl-tRNA synthetase; Reviewed	99.73
TIGR00344		851	alaS alanine--tRNA ligase. The model describes ala	99.72
PRK12444		639	threonyl-tRNA synthetase; Reviewed	99.71
TIGR00418		563	thrS threonyl-tRNA synthetase. This model represen	99.61
PLN02908		686	threonyl-tRNA synthetase	99.55
PF07973		44	tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco	99.54
PRK01584		594	alanyl-tRNA synthetase; Provisional	99.48
PF07973		44	tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco	99.43
COG0441		589	ThrS Threonyl-tRNA synthetase [Translation, riboso	99.41
COG2872		241	Predicted metal-dependent hydrolases related to al	99.39
PLN02961		223	alanine-tRNA ligase	99.27
smart00863		44	tRNA_SAD Threonyl and Alanyl tRNA synthetase secon	99.26
smart00863		44	tRNA_SAD Threonyl and Alanyl tRNA synthetase secon	99.15
KOG2105\|consensus		415		99.04
KOG2571\|consensus		862		98.82
PF01411		552	tRNA-synt_2c: tRNA synthetases class II (A); Inter	98.78
PRK12305		575	thrS threonyl-tRNA synthetase; Reviewed	98.1
PF02272		68	DHHA1: DHHA1 domain; InterPro: IPR003156 This doma	98.07
PF03142		527	Chitin_synth_2: Chitin synthase; InterPro: IPR0048	97.95
PRK00413		638	thrS threonyl-tRNA synthetase; Reviewed	97.53
PRK12444		639	threonyl-tRNA synthetase; Reviewed	97.21
PLN02837		614	threonine-tRNA ligase	96.48
PRK14799		545	thrS threonyl-tRNA synthetase; Provisional	96.34
KOG1637\|consensus		560		95.97
TIGR00418		563	thrS threonyl-tRNA synthetase. This model represen	95.59
PLN02908		686	threonyl-tRNA synthetase	94.14
TIGR00644		539	recJ single-stranded-DNA-specific exonuclease RecJ	88.02
PRK14799		545	thrS threonyl-tRNA synthetase; Provisional	80.7

>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=2.2e-72  Score=645.52  Aligned_cols=394  Identities=32%  Similarity=0.433  Sum_probs=348.3

Q ss_pred             HhhhcceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEccccccCC-CEEEEEecc-cccccCCC
Q psy6230         242 LQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSPYHVKSH-GYSYIEPCV-EICAWTGG  319 (699)
Q Consensus       242 ~~k~~~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~~~~~~~-g~i~H~~~~-~~~l~~G~  319 (699)
                      ...++..++|+|+|+||+|+      |||++|+|+|...+   +..|.|.||+     +.+ |.++|.+.. .|.+.+|+
T Consensus       484 ~~~g~~~~vVld~TpFYaEs------GGQ~~D~G~i~~~~---~~~~~V~dvq-----K~~~~~~vH~~~~~~G~l~~gd  549 (879)
T COG0013         484 LNEGQEVYVVLDQTPFYAES------GGQVGDTGYIFGDG---GGRFEVTDVQ-----KVGNGVIVHKGKVESGELKVGD  549 (879)
T ss_pred             ccCCceEEEEEecCCccCCC------CCccCceEEEEecC---CcEEEEEEEE-----EcCCceEEEEEeeccCccCCCC
Confidence            33445569999999999999      99999999998752   2589999999     455 899999877 56899999


Q ss_pred             eeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCE
Q psy6230         320 RSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPV  399 (699)
Q Consensus       320 ~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V  399 (699)
                      .|.+.|||+||+.+|+||||||||++|||+++|.|++|+||.++++++||||+|++++|+++|.+||+.+|++|++|+||
T Consensus       550 ~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vNe~I~~n~~V  629 (879)
T COG0013         550 EVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEIIRENLPV  629 (879)
T ss_pred             EEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHHHHHHHHHHHHHHHHcCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCHHHHHhhhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeeec
Q psy6230         400 YAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIA  479 (699)
Q Consensus       400 ~~~~~~~~eA~~~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~~  479 (699)
                      .+.++++++|++. |++++|+++|++.||||+||+                +|+++||||||.|||+||.|||+++++++
T Consensus       630 ~~~~m~~~eAk~~-Ga~alfGekY~~~VRVV~ig~----------------~SvElCGGTHv~~Tg~IG~fkI~~e~~i~  692 (879)
T COG0013         630 KTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIGD----------------FSVELCGGTHVSNTGDIGLFKIISEEGIA  692 (879)
T ss_pred             eEEEccHHHHHHh-ChHhhcCCcCCCeEEEEEECC----------------ceeeccCCcccCCccceeeEEEEEecccc
Confidence            9999999999998 999999999999999999997                79999999999999999999999999999


Q ss_pred             cCeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHH
Q psy6230         480 KGIRRIVALSGNEATKAIKKAQVIETEVLNVKNTLSNPNTADSKALSKKIIDITEEIAKATLPYWKKEDLRNLLKTMKKS  559 (699)
Q Consensus       480 ~g~~RI~~v~G~~A~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~v~~l~~~~~~~~ip~~~k~~l~~~~~~l~k~  559 (699)
                      .|+|||+|+||..|+++++..   .+.+.+++..|+++     .++..++.+                 |++++++++|+
T Consensus       693 aGVrRIeavtG~~a~~~~~~~---~~~l~~~a~~lk~~-----~~~~~kv~~-----------------l~~~~k~leke  747 (879)
T COG0013         693 AGVRRIEAVTGEAALEYLQEQ---EDLLKEIASLLKVP-----PELLPKVER-----------------LLEELKELEKE  747 (879)
T ss_pred             cCeEEEEEEcCHHHHHHHHHH---HHHHHHHHHHhCCC-----hhHHHHHHH-----------------HHHHHHHHHHH
Confidence            999999999999999988877   56788899999853     444557765                 77788889999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhhcCCcEEEEEEecCCCCHHHHHHHHHHHHhhCCCeEEEEEEEecCCCeEEEEEec
Q psy6230         560 LDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKALDAALKQVKTSAPHMAAMFISVDEAAKKIFCLSSV  639 (699)
Q Consensus       560 ~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~s~~~~~~k~~~~~~v  639 (699)
                      +.+++++++......+...++.  .+.++.++++..+ .+.|++.|+.+++.|+++.++.++++++..  ++|+.+++++
T Consensus       748 l~~lk~~~~~~~~~~~~~~~~~--~~i~g~~~~~~~~-~~~d~~~Lr~~a~~lk~k~~~~vivl~~~~--~~Kv~~~~~v  822 (879)
T COG0013         748 LERLKKKLAAAELADLLSNAKA--EEIGGVKVLAKEV-DGADMKELREIADDLKKKLGSAVIVLASVA--DGKVSLVVAV  822 (879)
T ss_pred             HHHHHHHHHHHHHHhhhhcccc--eeeCCEEEEEEEe-cCCCHHHHHHHHHHHHhhcCCcEEEEEEec--CCeEEEEEEe
Confidence            9888876655443333332211  2367788888888 457999999999999999999888888865  3389999999


Q ss_pred             ChhhhccCCCHHHHHHHHHhhcCCCCCCcccCeeecCCCCCCHHHHHHHHHHHHHhhh
Q psy6230         640 PKEAVSAGLTAIDWVRYLTDIMGGKGGGKAESAQASGPNYENAPLVLSKARDYASQQL  697 (699)
Q Consensus       640 ~~~~~~~~~~a~~~~k~~~~~l~GkGGG~~~~aQG~~~~~~~l~~al~~a~~~~~~~l  697 (699)
                      ++++. .+++|++|+++++..+||+|||+++||||+|+++.+++++++.+.+++++.|
T Consensus       823 ~~~~~-~~~~a~~lvk~la~~~gG~GGGr~d~Aqggg~d~~~~~~al~~~~~~i~~~l  879 (879)
T COG0013         823 SKDLT-DKVKAGELVKELAAIVGGKGGGRPDMAQGGGKDPEKLDEALELVIEWVKEKL  879 (879)
T ss_pred             chhhh-cccCHHHHHHHHHHhcCCCCCCchhhheeCCCCcccHHHHHHHHHHHHHhhC
Confidence            86654 4499999999999999999999999999999999999999999999998764

>PLN02900 alanyl-tRNA synthetase	Back alignment and domain information

>KOG0188\|consensus	Back alignment and domain information

>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase	Back alignment and domain information

>PRK00252 alaS alanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK13902 alaS alanyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR00344 alaS alanine--tRNA ligase	Back alignment and domain information

>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]	Back alignment and domain information

>PLN02961 alanine-tRNA ligase	Back alignment and domain information

>KOG2105\|consensus	Back alignment and domain information

>PRK01584 alanyl-tRNA synthetase; Provisional	Back alignment and domain information

>KOG0188\|consensus	Back alignment and domain information

>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02900 alanyl-tRNA synthetase	Back alignment and domain information

>PRK12305 thrS threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02837 threonine-tRNA ligase	Back alignment and domain information

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK13902 alaS alanyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase	Back alignment and domain information

>PRK00252 alaS alanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00344 alaS alanine--tRNA ligase	Back alignment and domain information

>PRK12444 threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00418 thrS threonyl-tRNA synthetase	Back alignment and domain information

>PLN02908 threonyl-tRNA synthetase	Back alignment and domain information

>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer	Back alignment and domain information

>PRK01584 alanyl-tRNA synthetase; Provisional	Back alignment and domain information

>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer	Back alignment and domain information

>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]	Back alignment and domain information

>PLN02961 alanine-tRNA ligase	Back alignment and domain information

>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain	Back alignment and domain information

>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain	Back alignment and domain information

>KOG2105\|consensus	Back alignment and domain information

>KOG2571\|consensus	Back alignment and domain information

>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PRK12305 thrS threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain	Back alignment and domain information

>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2	Back alignment and domain information

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK12444 threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02837 threonine-tRNA ligase	Back alignment and domain information

>PRK14799 thrS threonyl-tRNA synthetase; Provisional	Back alignment and domain information

>KOG1637\|consensus	Back alignment and domain information

>TIGR00418 thrS threonyl-tRNA synthetase	Back alignment and domain information

>PLN02908 threonyl-tRNA synthetase	Back alignment and domain information

>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ	Back alignment and domain information

>PRK14799 thrS threonyl-tRNA synthetase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		699
2zzf_A		752	Crystal Structure Of Alanyl-Trna Synthetase Without		5e-09
2zze_A		752	Crystal Structure Of Alanyl-Trna Synthetase Without		4e-06
2ztg_A		739	Crystal Structure Of Archaeoglobus Fulgidus Alanyl-		3e-04

>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752

Back alignment and structure

Iteration: 1

Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 69/163 (42%), Gaps = 17/163 (10%) Query: 329 RRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEAE 388 RR M +HT TH+L AL VLG Q GS + D R D ++ ++ +++K+ E Sbjct: 605 RRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYKRISEEELKEIEML 664 Query: 389 VIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPD-PVRVVCVGTPVEQLESEPESQA 447 RIV + V + A++ G R P +RVV + Sbjct: 665 ANRIVMEDRKVTWEWLPRTTAEQKYGFRLYQGGVVPGREIRVVKIE-------------- 710 Query: 448 GMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSG 490 + V+ CGGTHL VG I E I G+ RI+ G Sbjct: 711 --DWDVQACGGTHLPSTGLVGPIKILRTERIQDGVERIIFACG 751

PyMOL of 2zzf

>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752

Back alignment and structure

>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		699
2ztg_A		739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	4e-45
2ztg_A		739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	2e-10
3kew_A		241	DHHA1 domain protein; structural genomics, PSI-2,	1e-40
3kew_A		241	DHHA1 domain protein; structural genomics, PSI-2,	3e-10
1v4p_A		157	Alanyl-tRNA synthetase; alanine-tRNA ligase, riken	1e-38
1v4p_A		157	Alanyl-tRNA synthetase; alanine-tRNA ligase, riken	9e-08
2e1b_A		216	PH0108, 216AA long hypothetical alanyl-tRNA synthe	7e-37
2e1b_A		216	PH0108, 216AA long hypothetical alanyl-tRNA synthe	4e-09
2zze_A		752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	2e-31
2zze_A		752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
2zvf_A		171	Alanyl-tRNA synthetase; C-terminal, oligomerizatio	2e-10
3g98_A		111	Alanyl-tRNA synthetase; alpha and beta fold, amino	8e-08

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739	Back alignment and structure

 Score =  171 bits (436), Expect = 4e-45
 Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 20/165 (12%)

Query: 328 ARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGAMTADQVKKAEA 387
             R   M +H+ATH+L ++L+ VLG    Q G+     + R D T+    + +++K+ E 
Sbjct: 591 DVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEM 650

Query: 388 EVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFD--ETYPDPVRVVCVGTPVEQLESEPES 445
              R +   KP+  +     +A++ K    ++         +RVV VG            
Sbjct: 651 LANREILANKPIKWEWMDRIEAER-KFGFRLYQGGVPPGRKIRVVQVG------------ 697

Query: 446 QAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSG 490
                  V+ CGGTH      +G   I   E+I  G+ R    +G
Sbjct: 698 -----DDVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAG 737

PyMOL of 2ztg

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739	Back alignment and structure

>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241	Back alignment and structure

>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241	Back alignment and structure

>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157	Back alignment and structure

>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157	Back alignment and structure

>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216	Back alignment and structure

>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216	Back alignment and structure

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752	Back alignment and structure

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} Length = 171	Back alignment and structure

>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus} Length = 111	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		699
3kew_A		241	DHHA1 domain protein; structural genomics, PSI-2,	100.0
2zze_A		752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	100.0
2e1b_A		216	PH0108, 216AA long hypothetical alanyl-tRNA synthe	100.0
2ztg_A		739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	100.0
1v4p_A		157	Alanyl-tRNA synthetase; alanine-tRNA ligase, riken	99.94
1tke_A		224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	99.93
1nyr_A		645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	99.88
1qf6_A		642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	99.86
2zvf_A		171	Alanyl-tRNA synthetase; C-terminal, oligomerizatio	99.84
3g98_A		111	Alanyl-tRNA synthetase; alpha and beta fold, amino	99.63
3kew_A		241	DHHA1 domain protein; structural genomics, PSI-2,	99.62
2zze_A		752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	99.49
2ztg_A		739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	99.37
2e1b_A		216	PH0108, 216AA long hypothetical alanyl-tRNA synthe	99.35
1v4p_A		157	Alanyl-tRNA synthetase; alanine-tRNA ligase, riken	98.97
1tke_A		224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	98.4
1nyr_A		645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	98.38
1qf6_A		642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	97.87

>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}	Back alignment and structure

Probab=100.00  E-value=1.5e-51  Score=422.38  Aligned_cols=229  Identities=17%  Similarity=0.152  Sum_probs=206.5

Q ss_pred             ccccchhhHHHHHHHHHHhHHHHHHHhhhcceeEEeccchhhhhhccCCccceeecCCCccccCCCCcceeEEEEeEEcc
Q psy6230         217 LPYWKKEDLRNLLKTMKKSLDEAERLQKAAHASKVLDRVKSLVEERKADKFIVEILDAGSNTKIPRLRSFEFGLKRQTSP  296 (699)
Q Consensus       217 i~~~~K~~Lre~l~~v~K~vd~~~k~~k~~~~~~vld~T~fy~e~~~~~~~GGQ~~D~G~i~~~~~l~~~~~~V~~v~~~  296 (699)
                      .+||.++|++++-+++.++..      ..+...++||+|+|||++      ||||+|+|+|.        .+.|.+|+  
T Consensus         5 ~ly~~d~y~~~~~a~V~~~~~------~~~~~~vvLd~T~FYpeg------GGQ~~D~G~i~--------~~~V~~v~--   62 (241)
T 3kew_A            5 KLYYEDQYIKEFKGEIIEVKE------IDGKFHVLLDQTAFFPGG------GGQMGDLGLID--------GIKVLDVY--   62 (241)
T ss_dssp             EGGGTCTTCCEEEECEEEEEE------ETTEEEEEESEECCCCCB------TTBCCCCEEET--------TEEEEEEE--
T ss_pred             hhhhhCcccceeEEEEEEEEe------cCCeEEEEEeCCcccCCC------CCCCCCEEEEe--------eEEEEEEE--
Confidence            479999999999888876541      223478999999999999      99999999995        47999999  


Q ss_pred             ccccCCCEEEEEecccccccCCCeeeeecCCcCChHHHHHhHHHHHHHHHHHhHhCCcccccCccccCCcEEEEEecCCC
Q psy6230         297 YHVKSHGYSYIEPCVEICAWTGGRSEGIPGSARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVAPDRLRFDFTNKGA  376 (699)
Q Consensus       297 ~~~~~~g~i~H~~~~~~~l~~G~~V~~~vD~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~~Gs~v~~~~~r~Df~~~~~  376 (699)
                         +.+|.++|.+.  +++.+|++|.+.|||+||+++|++|||+|||++||+++||.+  +.|++++++++||||+  ++
T Consensus        63 ---~~~g~i~H~~~--~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~  133 (241)
T 3kew_A           63 ---EEEGKVYHVLE--KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GF  133 (241)
T ss_dssp             ---EETTEEEEEES--SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SC
T ss_pred             ---EeCCEEEEEEC--CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CC
Confidence               57999999974  678899999999999999999999999999999999999954  7999999999999999  68


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCcccccc
Q psy6230         377 MTADQVKKAEAEVIRIVQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFC  456 (699)
Q Consensus       377 ls~~~l~~IE~~~N~~I~~~~~V~~~~~~~~eA~~~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~C  456 (699)
                      +|++++.+||+.||++|++|+||++.+++++||++++ ++++ +++|++.||||+|++                +|+++|
T Consensus       134 lt~e~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~-~~~~-~e~~~~~VRvv~ig~----------------~~~~~C  195 (241)
T 3kew_A          134 LDEKTIREAEKEANRLIFENLEVKSYAPSKKELKKVK-TRRA-LPKTDEEIRIVEIVG----------------LDLNAC  195 (241)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCC-CSSC-CCCCSSCCCEEEETT----------------TEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcC-hhhc-CCccCCcEEEEEECC----------------eEEEcC
Confidence            9999999999999999999999999999999999974 6664 677899999999997                689999


Q ss_pred             cccccccccccccEEEEeeeeeccCeEEEEEEecHHHHH
Q psy6230         457 GGTHLAMAHHVGDFCISSEEAIAKGIRRIVALSGNEATK  495 (699)
Q Consensus       457 gGTHV~nT~eIg~~kI~~~~~~~~g~~RI~~v~G~~A~~  495 (699)
                      |||||+|||+||.|+|++.++++ |.+||+|+||.+|++
T Consensus       196 gGtHV~~TgeIg~fkI~~~~~~~-~~~RI~~~~G~~a~~  233 (241)
T 3kew_A          196 CGVHPRNTRDLQVIKIRRWEKHK-NATRIEYVAGNRAVS  233 (241)
T ss_dssp             CSCCCSBSGGGCCEEEEEEEEET-TEEEEEEEEGGGGC-
T ss_pred             CCCCcCCHhhcCCEEEEEEeccC-CcEEEEEEECHHHHh
Confidence            99999999999999999999975 557999999999875

PyMOL of 3kew

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*	Back alignment and structure

>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2	Back alignment and structure

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}	Back alignment and structure

>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A	Back alignment and structure

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*	Back alignment and structure

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*	Back alignment and structure

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1	Back alignment and structure

>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}	Back alignment and structure

>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}	Back alignment and structure

>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}	Back alignment and structure

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*	Back alignment and structure

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}	Back alignment and structure

>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2	Back alignment and structure

>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A	Back alignment and structure

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*	Back alignment and structure

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*	Back alignment and structure

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		699
d1v4pa_		151	d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo	1e-20
d1v4pa_		151	d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo	6e-04
d2e1ba2		129	d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C	2e-20
d2e1ba2		129	d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C	3e-07
d1nyra3		179	d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR	8e-12
d1tkea2		162	d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR	5e-10

>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: Hypothetical protein PH0574
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 86.9 bits (214), Expect = 1e-20
 Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 15/154 (9%)

Query: 334 MSNHTATHILNHALRFVLGPEADQKGS-LVAPDRLRFDFTNKGAMTADQVKKAEAEVIRI 392
           +  H+A H++  A+  VLG EA    S  V  ++           + +++++ E      
Sbjct: 6   VRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEK 65

Query: 393 VQTKKPVYAKLCSLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETS 452
           V+   P+        +A+K+ G         P+ VR++ V    +              +
Sbjct: 66  VKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDW-------------N 112

Query: 453 VEFCGGTHLAMAHHVGDFCI-SSEEAIAKGIRRI 485
           V  C   H      +G   I       +KG+  I
Sbjct: 113 VNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEI 146

PyMOL of d1v4pa_

>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151	Back information, alignment and structure

>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129	Back information, alignment and structure

>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129	Back information, alignment and structure

>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179	Back information, alignment and structure

>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		699
d2e1ba2		129	AlaX-M trans-editing enzyme, C-terminal domain {Py	100.0
d1v4pa_		151	Hypothetical protein PH0574 {Archaeon Pyrococcus h	99.97
d1nyra3		179	Threonyl-tRNA synthetase (ThrRS), second 'addition	99.94
d1tkea2		162	Threonyl-tRNA synthetase (ThrRS), second 'addition	99.82
d2e1ba2		129	AlaX-M trans-editing enzyme, C-terminal domain {Py	99.46
d1v4pa_		151	Hypothetical protein PH0574 {Archaeon Pyrococcus h	99.41
d2e1ba1		87	AlaX-M trans-editing enzyme, N-terminal domain {Py	99.13
d1nyra3		179	Threonyl-tRNA synthetase (ThrRS), second 'addition	98.72
d1tkea2		162	Threonyl-tRNA synthetase (ThrRS), second 'addition	96.42

>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: AlaX-M trans-editing enzyme, C-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=4e-33  Score=257.26  Aligned_cols=126  Identities=23%  Similarity=0.265  Sum_probs=114.6

Q ss_pred             CCcCChHHHHHhHHHHHHHHHHHhHhCCcccc-cCccccCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEc
Q psy6230         326 GSARRRPIMSNHTATHILNHALRFVLGPEADQ-KGSLVAPDRLRFDFTNKGAMTADQVKKAEAEVIRIVQTKKPVYAKLC  404 (699)
Q Consensus       326 D~~rR~~~m~~HTa~HLL~~al~~v~g~~~~~-~Gs~v~~~~~r~Df~~~~~ls~~~l~~IE~~~N~~I~~~~~V~~~~~  404 (699)
                      ||+||+.+|++|||+|||++|++++||.+..+ .|++++++++||||+++..++++ .++||+.+|++|.+++||...+ 
T Consensus         1 Dw~rR~~~mr~HTa~Hll~~al~~~~g~~~~~~~G~~i~~~~~r~Df~~~~~l~~~-~~~ie~~~n~~I~~~~~v~~~~-   78 (129)
T d2e1ba2           1 DWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISLFNKYVDEGGEVKIWW-   78 (129)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHHHHHHHHHCCBEEEEE-
T ss_pred             CHHHHHHHHHHhHHHHHHHHHHHHhcCCCcccccccccccceEEEEEecccccchH-HHHHHHHHHHHHHhccchhhhh-
Confidence            89999999999999999999999999977655 79999999999999998777754 5899999999999999997753 


Q ss_pred             CHHHHHhhhchhhhcCCCCCCCEEEEEeCCCcccccCCcccccCCCcccccccccccccccccccEEEEeeeeeccCeEE
Q psy6230         405 SLADAKKIKGLRAMFDETYPDPVRVVCVGTPVEQLESEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGIRR  484 (699)
Q Consensus       405 ~~~eA~~~~~l~~~~~e~y~~~VRvV~I~~~~~~l~~~~~~~~~~~~~~~~CgGTHV~nT~eIg~~kI~~~~~~~~g~~R  484 (699)
                                         .+.+|+|+|++                +|++|||||||.||++||.|+|++.+++++|++|
T Consensus        79 -------------------~~~~Riv~I~~----------------~d~~~CgGTHV~~T~eIg~i~I~~~~~~gkg~~R  123 (129)
T d2e1ba2          79 -------------------EGDRRYTQIRD----------------FEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQR  123 (129)
T ss_dssp             -------------------SSSCEEEEETT----------------SCEECCCSCCCSBGGGTCCEEEEEEEEEETTEEE
T ss_pred             -------------------cccceEEEecc----------------ccccccCCCCCcchhhCccEEEEEEEEEeCCcEE
Confidence                               23469999997                6899999999999999999999999999999999


Q ss_pred             EEEE
Q psy6230         485 IVAL  488 (699)
Q Consensus       485 I~~v  488 (699)
                      |+|.
T Consensus       124 I~~~  127 (129)
T d2e1ba2         124 LEMW  127 (129)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

PyMOL of d2e1ba2

>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure