Psyllid ID: psy6232


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
MCGLRNDDPCFFQNSIPDYLFFVSPSIYFLDDFILKQHAWVWLLWLLSQTWITLHIWTPKCERLATTEKLFVRPMYDALLIDQSMSLNRRCDDEKDVKTE
cccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccccccc
ccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHEEcccccccHHHHHHHHHcccccHHHcccc
mcglrnddpcffqnsipdylffvspsiyflddfILKQHAWVWLLWLLSQTWITlhiwtpkcerlatteKLFVRPMYDALLIDQSMslnrrcddekdvkte
MCGLRNDDPCFFQNSIPDYLFFVSPSIYFLDDFILKQHAWVWLLWLLSQTWITLHIWTPKCERLATTEKLFVRPMYDALlidqsmslnrrcddekdvkte
MCGLRNDDPCFFQNSIPDYLFFVSPSIYFLDDFILKQHAWVWLLWLLSQTWITLHIWTPKCERLATTEKLFVRPMYDALLIDQSMSLNRRCDDEKDVKTE
*******DPCFFQNSIPDYLFFVSPSIYFLDDFILKQHAWVWLLWLLSQTWITLHIWTPKCERLATTEKLFVRPMYDALLIDQ*****************
**GLR*DDPCFFQNSIPDYLFFVSPSIYFLDDFILKQHAWVWLLWLLSQTWITLHIWTPKCERLATTEKLFVRPMYDALLIDQSMSLNRRC*********
MCGLRNDDPCFFQNSIPDYLFFVSPSIYFLDDFILKQHAWVWLLWLLSQTWITLHIWTPKCERLATTEKLFVRPMYDALLIDQSMSLNR***********
MCGLRNDDPCFFQNSIPDYLFFVSPSIYFLDDFILKQHAWVWLLWLLSQTWITLHIWTPKCERLATTEKLFVRPMYDALLIDQSMSLNRRC*********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MCGLRNDDPCFFQNSIPDYLFFVSPSIYFLDDFILKQHAWVWLLWLLSQTWITLHIWTPKCERLATTEKLFVRPMYDALLIDQSMSLNRRCDDEKDVKTE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query100
391226611 1579 chitin synthase [Anasa tristis] 0.99 0.062 0.828 7e-45
378830222 1578 chitin synthase 1 variant b [Nilaparvata 1.0 0.063 0.82 5e-44
378830218 1573 chitin synthase 1 variant b [Laodelphax 1.0 0.063 0.82 5e-44
378830220 1573 chitin synthase 1 variant a [Laodelphax 1.0 0.063 0.82 5e-44
378830224 1578 chitin synthase 1 variant a [Nilaparvata 1.0 0.063 0.82 5e-44
328722243 1566 PREDICTED: hypothetical protein LOC10016 0.99 0.063 0.808 5e-44
313667172 1573 chitin synthase [Laodelphax striatella] 1.0 0.063 0.82 6e-44
386266703 1567 chitin synthase 1 [Aphis glycines] 0.99 0.063 0.797 6e-44
242005488 1588 chitin synthase, putative [Pediculus hum 0.99 0.062 0.777 2e-43
343129710 1344 chitin synthase A [Nilaparvata lugens] 1.0 0.074 0.79 2e-42
>gi|391226611|gb|AFM38193.1| chitin synthase [Anasa tristis] Back     alignment and taxonomy information
 Score =  184 bits (466), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 91/99 (91%)

Query: 2   CGLRNDDPCFFQNSIPDYLFFVSPSIYFLDDFILKQHAWVWLLWLLSQTWITLHIWTPKC 61
           CGLR+DDPCFF+  +PDYLFF SP +YFL+DFI KQHAW+WLLWLLSQTWITLHIWTPKC
Sbjct: 441 CGLRHDDPCFFRGVVPDYLFFESPPVYFLNDFITKQHAWIWLLWLLSQTWITLHIWTPKC 500

Query: 62  ERLATTEKLFVRPMYDALLIDQSMSLNRRCDDEKDVKTE 100
           ERLATTEKLFV PMYD+LLIDQS+ LNRR +DEKDVKTE
Sbjct: 501 ERLATTEKLFVLPMYDSLLIDQSLGLNRRREDEKDVKTE 539




Source: Anasa tristis

Species: Anasa tristis

Genus: Anasa

Family: Coreidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|378830222|gb|AFC61180.1| chitin synthase 1 variant b [Nilaparvata lugens] Back     alignment and taxonomy information
>gi|378830218|gb|AFC61178.1| chitin synthase 1 variant b [Laodelphax striatella] Back     alignment and taxonomy information
>gi|378830220|gb|AFC61179.1| chitin synthase 1 variant a [Laodelphax striatella] Back     alignment and taxonomy information
>gi|378830224|gb|AFC61181.1| chitin synthase 1 variant a [Nilaparvata lugens] Back     alignment and taxonomy information
>gi|328722243|ref|XP_003247517.1| PREDICTED: hypothetical protein LOC100162079 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|313667172|gb|ADR73029.1| chitin synthase [Laodelphax striatella] Back     alignment and taxonomy information
>gi|386266703|gb|AFJ00066.1| chitin synthase 1 [Aphis glycines] Back     alignment and taxonomy information
>gi|242005488|ref|XP_002423597.1| chitin synthase, putative [Pediculus humanus corporis] gi|212506745|gb|EEB10859.1| chitin synthase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|343129710|gb|AEL88648.1| chitin synthase A [Nilaparvata lugens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query100
FB|FBgn0001311 1615 kkv "krotzkopf verkehrt" [Dros 0.99 0.061 0.737 5.6e-38
WB|WBGene00000497 1668 chs-2 [Caenorhabditis elegans 0.99 0.059 0.46 1.2e-19
FB|FBgn0029091 1416 CS-2 "Chitin synthase 2" [Dros 0.9 0.063 0.456 1.6e-14
ZFIN|ZDB-GENE-060503-226 1165 si:ch211-264e16.1 "si:ch211-26 0.56 0.048 0.375 2.3e-05
ZFIN|ZDB-GENE-060503-320 1239 si:ch211-264e16.2 "si:ch211-26 0.56 0.045 0.375 0.00014
ZFIN|ZDB-GENE-060503-308 1216 si:ch211-219a15.4 "si:ch211-21 0.56 0.046 0.375 0.00018
FB|FBgn0001311 kkv "krotzkopf verkehrt" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 421 (153.3 bits), Expect = 5.6e-38, P = 5.6e-38
 Identities = 73/99 (73%), Positives = 86/99 (86%)

Query:     2 CGLRNDDPCFFQNSIPDYLFFVSPSIYFLDDFILKQHAWVWLLWLLSQTWITLHIWTPKC 61
             CG+R DDPCFF ++IPDYLFF SPS +  ++F+ +Q AW W+LWLLSQTWI LHIWTPKC
Sbjct:   441 CGIRIDDPCFFHDTIPDYLFFTSPSNFRFNNFVTEQMAWAWILWLLSQTWIALHIWTPKC 500

Query:    62 ERLATTEKLFVRPMYDALLIDQSMSLNRRCDDEKDVKTE 100
             ERLATTEKLFV+PMY +LLIDQSM+LNRR DD+ DVKTE
Sbjct:   501 ERLATTEKLFVQPMYSSLLIDQSMALNRRRDDQADVKTE 539




GO:0007443 "Malpighian tubule morphogenesis" evidence=IMP
GO:0004100 "chitin synthase activity" evidence=ISS;NAS
GO:0008362 "chitin-based embryonic cuticle biosynthetic process" evidence=IMP
GO:0016021 "integral to membrane" evidence=ISS
GO:0035158 "regulation of tube diameter, open tracheal system" evidence=IMP
GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP
GO:0007424 "open tracheal system development" evidence=IMP
GO:0001838 "embryonic epithelial tube formation" evidence=IMP
GO:0006035 "cuticle chitin biosynthetic process" evidence=IMP
GO:0009611 "response to wounding" evidence=IEP
GO:0007430 "terminal branching, open tracheal system" evidence=IMP
GO:0060439 "trachea morphogenesis" evidence=IMP
WB|WBGene00000497 chs-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0029091 CS-2 "Chitin synthase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-226 si:ch211-264e16.1 "si:ch211-264e16.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-320 si:ch211-264e16.2 "si:ch211-264e16.2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-308 si:ch211-219a15.4 "si:ch211-219a15.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 100
KOG2571|consensus 862 98.89
>KOG2571|consensus Back     alignment and domain information
Probab=98.89  E-value=2.9e-10  Score=102.16  Aligned_cols=96  Identities=24%  Similarity=0.156  Sum_probs=89.8

Q ss_pred             CCCCCCCCccccccCCCCce-eccCCC-cccHHHHHHHHHHHHHHHHHHHhHHHhhhccCcccccccccccccccccchh
Q psy6232           1 MCGLRNDDPCFFQNSIPDYL-FFVSPS-IYFLDDFILKQHAWVWLLWLLSQTWITLHIWTPKCERLATTEKLFVRPMYDA   78 (100)
Q Consensus         1 ~C~~r~~d~C~f~~~iPdyL-F~~~p~-~~~l~~f~~~~~~w~WLlWllSQ~Wit~HiW~p~~eRLA~tEkLFv~p~Y~~   78 (100)
                      .|.+|..|||.-+|.++|+. .+.++. ..++.+|......|.|+.|+.||.|.+.|.|++++++.+++|+++..|+|.|
T Consensus       141 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  220 (862)
T KOG2571|consen  141 NAILRQSDPCERRGFLSDESLKPKLSKTFESLKLFILDYQLWESLIDLDSGSWRGYTDMNTANKRKMPNEGLTRAPRYIG  220 (862)
T ss_pred             cchhccCCcccccccccccCCCCCCCccccchhccccchhhhccCcccccccchheeeccccccccccccCCccCceeee
Confidence            37889999999999999998 999984 4577999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhccccccccc
Q psy6232          79 LLIDQSMSLNRRCDDEKD   96 (100)
Q Consensus        79 ~liDQsl~lNRrr~d~~~   96 (100)
                      ..++|++++++++.+...
T Consensus       221 ~~~~~~~~~~~~~~~~~~  238 (862)
T KOG2571|consen  221 TTLFQSSVLGLIKVALST  238 (862)
T ss_pred             ehhhhhhccccchhhhhc
Confidence            999999999999987653




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00