Psyllid ID: psy6239

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM
ccEEEEEHHcccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccc
cccEEEEEccccccccEEEcHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHcccccEEcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
MSALIVYNLKIRRLKsynfnwdeclhmsgdggvklqySHCRLVSLAqecnaiqppdhcdpkllaEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGmcvlglkpldkm
MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMcvlglkpldkm
MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM
***LIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGL******
MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM
MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM
MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPL***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query151 2.2.26 [Sep-21-2011]
Q558Z0589 Probable arginine--tRNA l yes N/A 0.993 0.254 0.357 3e-23
Q6GQJ7580 Probable arginine--tRNA l N/A N/A 0.973 0.253 0.383 2e-21
P38714643 Arginine--tRNA ligase, mi yes N/A 1.0 0.234 0.333 8e-21
Q05506607 Arginine--tRNA ligase, cy no N/A 1.0 0.248 0.346 2e-20
O74781618 Probable arginine--tRNA l yes N/A 0.993 0.242 0.357 3e-20
Q8SRD8563 Arginine--tRNA ligase OS= yes N/A 1.0 0.268 0.346 1e-19
Q5T160578 Probable arginine--tRNA l yes N/A 0.993 0.259 0.364 3e-19
Q5REH3578 Probable arginine--tRNA l yes N/A 0.993 0.259 0.364 3e-19
Q3U186578 Probable arginine--tRNA l yes N/A 0.993 0.259 0.357 5e-18
Q0P5H7578 Probable arginine--tRNA l yes N/A 0.993 0.259 0.344 2e-17
>sp|Q558Z0|SYRC_DICDI Probable arginine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=argS1 PE=3 SV=1 Back     alignment and function desciption
 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 1/151 (0%)

Query: 1   MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
           +SA+++ +   +R K Y+FNWD  L   GD G  LQY+H RL SL ++      P+  + 
Sbjct: 440 LSAVVIQDFNAKRNKDYDFNWDRMLKSDGDTGPYLQYAHARLCSLERKSGFEFNPN-ANL 498

Query: 61  KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
            LL+EP A  L + I R+ E++   H   + S +V YLF L ++++ A + L +K  E  
Sbjct: 499 SLLSEPEAFNLAITIGRYPEIIQLTHNQLEPSTLVGYLFELAHAVSSAHQVLWIKDREKD 558

Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
           V++ R +L+  A+++L  G+ +LGL PL++M
Sbjct: 559 VAEARFVLYWAAKVILGSGLRILGLVPLERM 589
Forms part of a macromolecular complex that catalyzes the attachment of specific amino acids to cognate tRNAs during protein synthesis.
Dictyostelium discoideum (taxid: 44689)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9
>sp|Q6GQJ7|SYRM_XENLA Probable arginine--tRNA ligase, mitochondrial OS=Xenopus laevis GN=rars2 PE=2 SV=1 Back     alignment and function description
>sp|P38714|SYRM_YEAST Arginine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSR1 PE=3 SV=3 Back     alignment and function description
>sp|Q05506|SYRC_YEAST Arginine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR341C PE=1 SV=1 Back     alignment and function description
>sp|O74781|SYRC_SCHPO Probable arginine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25B2.09c PE=2 SV=1 Back     alignment and function description
>sp|Q8SRD8|SYR_ENCCU Arginine--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU08_0550 PE=1 SV=1 Back     alignment and function description
>sp|Q5T160|SYRM_HUMAN Probable arginine--tRNA ligase, mitochondrial OS=Homo sapiens GN=RARS2 PE=1 SV=1 Back     alignment and function description
>sp|Q5REH3|SYRM_PONAB Probable arginine--tRNA ligase, mitochondrial OS=Pongo abelii GN=RARS2 PE=2 SV=1 Back     alignment and function description
>sp|Q3U186|SYRM_MOUSE Probable arginine--tRNA ligase, mitochondrial OS=Mus musculus GN=Rars2 PE=2 SV=1 Back     alignment and function description
>sp|Q0P5H7|SYRM_BOVIN Probable arginine--tRNA ligase, mitochondrial OS=Bos taurus GN=RARS2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query151
91079400 554 PREDICTED: similar to arginyl-tRNA synth 0.993 0.270 0.509 4e-34
322792442 554 hypothetical protein SINV_15311 [Solenop 0.993 0.270 0.483 2e-33
328708076 572 PREDICTED: probable arginyl-tRNA synthet 0.993 0.262 0.480 2e-32
307211858 391 Probable arginyl-tRNA synthetase, mitoch 0.993 0.383 0.463 2e-32
158299141 568 AGAP010086-PA [Anopheles gambiae str. PE 0.966 0.257 0.490 5e-32
307171176 391 Probable arginyl-tRNA synthetase, mitoch 0.993 0.383 0.456 1e-31
332023805 386 Putative arginyl-tRNA synthetase, mitoch 0.993 0.388 0.476 1e-31
345494753 567 PREDICTED: probable arginyl-tRNA synthet 0.993 0.264 0.450 4e-31
170052266 557 arginyl-tRNA synthetase [Culex quinquefa 0.993 0.269 0.440 2e-29
157137800 557 arginyl-tRNA synthetase [Aedes aegypti] 0.993 0.269 0.453 3e-29
>gi|91079400|ref|XP_966449.1| PREDICTED: similar to arginyl-tRNA synthetase [Tribolium castaneum] gi|270004375|gb|EFA00823.1| hypothetical protein TcasGA2_TC003711 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/151 (50%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 1   MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
           +S +IV +LK RR K Y F WD  L + GD GVKLQY+HCRL SL +   A +P     P
Sbjct: 405 VSCVIVNDLKQRRQKDYEFTWDSVLQVQGDTGVKLQYTHCRLYSLERNSGATRP-KKVIP 463

Query: 61  KLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYH 120
           ++L EP A  L+ +IARF E+L +++E  ++ I+V YLF L N INKALK L VK T+  
Sbjct: 464 EVLKEPEATALVREIARFHEILNRSNEQLEACILVTYLFRLCNQINKALKVLPVKNTDPE 523

Query: 121 VSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
           ++  RLLLF  AR VL +GM +LGL PLD+M
Sbjct: 524 IASQRLLLFITARQVLGKGMSILGLHPLDEM 554

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|322792442|gb|EFZ16426.1| hypothetical protein SINV_15311 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|328708076|ref|XP_001946117.2| PREDICTED: probable arginyl-tRNA synthetase, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307211858|gb|EFN87805.1| Probable arginyl-tRNA synthetase, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|158299141|ref|XP_319244.3| AGAP010086-PA [Anopheles gambiae str. PEST] gi|157014226|gb|EAA14606.3| AGAP010086-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|307171176|gb|EFN63163.1| Probable arginyl-tRNA synthetase, mitochondrial [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332023805|gb|EGI64029.1| Putative arginyl-tRNA synthetase, mitochondrial [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|345494753|ref|XP_001604101.2| PREDICTED: probable arginyl-tRNA synthetase, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|170052266|ref|XP_001862144.1| arginyl-tRNA synthetase [Culex quinquefasciatus] gi|167873169|gb|EDS36552.1| arginyl-tRNA synthetase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157137800|ref|XP_001664040.1| arginyl-tRNA synthetase [Aedes aegypti] gi|108869646|gb|EAT33871.1| AAEL013862-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query151
FB|FBgn0037526594 CG10092 [Drosophila melanogast 1.0 0.254 0.419 6.1e-24
DICTYBASE|DDB_G0272867589 argS1 "arginyl-tRNA synthetase 0.993 0.254 0.357 3.3e-22
CGD|CAL0004134643 orf19.3341 [Candida albicans ( 1.0 0.234 0.348 3.8e-21
SGD|S000001133643 MSR1 "Mitochondrial arginyl-tR 1.0 0.234 0.333 7.5e-20
ZFIN|ZDB-GENE-040426-1244597 rars2 "arginyl-tRNA synthetase 0.973 0.246 0.392 1.1e-19
UNIPROTKB|E1C229579 RARS2 "Uncharacterized protein 0.993 0.259 0.364 2.7e-19
SGD|S000002749607 YDR341C "Arginyl-tRNA syntheta 1.0 0.248 0.346 4.8e-19
POMBASE|SPBC25B2.09c618 mrs1 "mitochondrial and cytopl 0.927 0.226 0.375 1.1e-18
UNIPROTKB|Q5T160578 RARS2 "Probable arginine--tRNA 0.993 0.259 0.364 1.9e-18
RGD|1305419578 Rars2 "arginyl-tRNA synthetase 0.993 0.259 0.377 1.9e-18
FB|FBgn0037526 CG10092 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 282 (104.3 bits), Expect = 6.1e-24, P = 6.1e-24
 Identities = 65/155 (41%), Positives = 98/155 (63%)

Query:     1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPD-HCD 59
             +SA++V  LK RR + + F+W + L ++GD G+KLQY+HCRL SL      +   D   D
Sbjct:   440 VSAVLVNVLKQRRQRDHEFSWQQALQVNGDTGIKLQYTHCRLHSLLDNFRDVDLDDIKPD 499

Query:    60 PKLLA-EPV-ALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGT 117
              K  + EP  AL L+  +ARFD+ ++Q+ E  ++ ++V YLF L N+ ++ALK+L VK  
Sbjct:   500 WKHFSTEPADALDLLYALARFDQSVWQSKEQLEACVLVNYLFGLCNATSQALKRLPVKQE 559

Query:   118 EYHVSQ-HRLLLFNKARLVLNQGMCVLGLKPLDKM 151
                  Q  RLLLF+ A+  L  GM +LGL+PL++M
Sbjct:   560 SSLEKQLQRLLLFHAAKKTLRHGMELLGLRPLNQM 594
GO:0004814 "arginine-tRNA ligase activity" evidence=ISS
GO:0006420 "arginyl-tRNA aminoacylation" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
DICTYBASE|DDB_G0272867 argS1 "arginyl-tRNA synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0004134 orf19.3341 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
SGD|S000001133 MSR1 "Mitochondrial arginyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1244 rars2 "arginyl-tRNA synthetase 2, mitochondrial (putative)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C229 RARS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000002749 YDR341C "Arginyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPBC25B2.09c mrs1 "mitochondrial and cytoplasmic arginine-tRNA ligase Rrs1/Mrs1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q5T160 RARS2 "Probable arginine--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305419 Rars2 "arginyl-tRNA synthetase 2, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
cd07956156 cd07956, Anticodon_Ia_Arg, Anticodon-binding domai 2e-36
smart00836122 smart00836, DALR_1, DALR anticodon binding domain 2e-26
COG0018577 COG0018, ArgS, Arginyl-tRNA synthetase [Translatio 6e-24
TIGR00456566 TIGR00456, argS, arginyl-tRNA synthetase 1e-22
pfam05746117 pfam05746, DALR_1, DALR anticodon binding domain 3e-21
PRK01611507 PRK01611, argS, arginyl-tRNA synthetase; Reviewed 3e-20
PLN02286576 PLN02286, PLN02286, arginine-tRNA ligase 1e-14
PRK12451562 PRK12451, PRK12451, arginyl-tRNA synthetase; Revie 6e-14
cd07375117 cd07375, Anticodon_Ia_like, Anticodon-binding doma 1e-05
>gnl|CDD|153410 cd07956, Anticodon_Ia_Arg, Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information 
 Score =  122 bits (308), Expect = 2e-36
 Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 3/153 (1%)

Query: 1   MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPDHCDP 60
           + A+   +L  +R+K Y F+W+  L   GD G  LQY+H RL S+             D 
Sbjct: 5   VGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSI-LRKAGETIEAEADA 63

Query: 61  KL--LAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE 118
            L  L EP    LIL +A+F EV+  A E+ +   +  YLF+L ++ +K      V G E
Sbjct: 64  DLSLLPEPDERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVLGAE 123

Query: 119 YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
             +   RL L   AR VL  G+ +LG++  ++M
Sbjct: 124 EELRNARLALVAAARQVLANGLDLLGIEAPERM 156

This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA. Length = 156
>gnl|CDD|214846 smart00836, DALR_1, DALR anticodon binding domain Back     alignment and domain information
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|218729 pfam05746, DALR_1, DALR anticodon binding domain Back     alignment and domain information
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215160 PLN02286, PLN02286, arginine-tRNA ligase Back     alignment and domain information
>gnl|CDD|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 151
cd07956156 Anticodon_Ia_Arg Anticodon-binding domain of argin 100.0
COG0018577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 100.0
PLN02286576 arginine-tRNA ligase 100.0
PRK12451562 arginyl-tRNA synthetase; Reviewed 100.0
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 100.0
TIGR00456566 argS arginyl-tRNA synthetase. This model recognize 100.0
PF05746119 DALR_1: DALR anticodon binding domain; InterPro: I 100.0
KOG1195|consensus567 100.0
smart00836122 DALR_1 DALR anticodon binding domain. This all alp 100.0
KOG4426|consensus656 99.97
PRK01233682 glyS glycyl-tRNA synthetase subunit beta; Validate 99.66
TIGR00211691 glyS glycyl-tRNA synthetase, tetrameric type, beta 99.66
COG0751691 GlyS Glycyl-tRNA synthetase, beta subunit [Transla 99.63
PRK149081000 glycyl-tRNA synthetase; Provisional 99.59
PTZ00399 651 cysteinyl-tRNA-synthetase; Provisional 99.3
TIGR00398530 metG methionyl-tRNA synthetase. The methionyl-tRNA 98.75
PRK11893511 methionyl-tRNA synthetase; Reviewed 98.56
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 98.33
PRK12268556 methionyl-tRNA synthetase; Reviewed 98.2
cd07375117 Anticodon_Ia_like Anticodon-binding domain of clas 97.45
PLN02946557 cysteine-tRNA ligase 97.12
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 96.91
PRK12267 648 methionyl-tRNA synthetase; Reviewed 96.89
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 96.8
TIGR00392861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 96.75
PLN02610 801 probable methionyl-tRNA synthetase 96.6
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 96.44
COG0143558 MetG Methionyl-tRNA synthetase [Translation, ribos 96.41
PLN02224616 methionine-tRNA ligase 96.11
cd07957129 Anticodon_Ia_Met Anticodon-binding domain of methi 95.02
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 94.53
TIGR00422 861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 94.22
PRK13208 800 valS valyl-tRNA synthetase; Reviewed 93.26
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 92.45
PLN02943 958 aminoacyl-tRNA ligase 92.21
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 92.11
PRK00390805 leuS leucyl-tRNA synthetase; Validated 91.63
PLN02843 974 isoleucyl-tRNA synthetase 91.54
cd07958117 Anticodon_Ia_Leu_BEm Anticodon-binding domain of b 89.88
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 89.37
KOG0436|consensus578 89.17
PLN02882 1159 aminoacyl-tRNA ligase 88.8
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 87.27
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 85.45
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 84.31
PRK14536490 cysS cysteinyl-tRNA synthetase; Provisional 84.07
PF08264153 Anticodon_1: Anticodon-binding domain of tRNA; Int 82.34
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 82.28
cd07959117 Anticodon_Ia_Leu_AEc Anticodon-binding domain of a 82.16
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases Back     alignment and domain information 
Probab=100.00  E-value=2.9e-44  Score=258.80  Aligned_cols=151  Identities=34%  Similarity=0.587  Sum_probs=141.9

Q ss_pred             CcchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCC-CCCCCCCCCCCCCHHHHHHHHHHHHhH
Q psy6239           1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAI-QPPDHCDPKLLAEPVALQLILDIARFD   79 (151)
Q Consensus         1 ~~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~-~~~~~~d~~~l~~~~E~~L~~~l~~~~   79 (151)
                      +||++|++|+.+++++|+|||+.+++++|++++|+||+|+|++||++|++.. ....++|++.+.++.|++|+..+..+|
T Consensus         5 ~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~~~~   84 (156)
T cd07956           5 VGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLAKFP   84 (156)
T ss_pred             hhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHHHhH
Confidence            4899999999999999999999999999999999999999999999998731 111346778889999999999999999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239          80 EVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM  151 (151)
Q Consensus        80 ~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M  151 (151)
                      +++.+++++.+|+.+++|+.+|++.||+||++|+|++++.+++.+||+|++++++++++||++|||+||++|
T Consensus        85 ~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~~~~m  156 (156)
T cd07956          85 EVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEAPERM  156 (156)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence            999999999999999999999999999999999999998889999999999999999999999999999999

This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02286 arginine-tRNA ligase Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG1195|consensus Back     alignment and domain information
>smart00836 DALR_1 DALR anticodon binding domain Back     alignment and domain information
>KOG4426|consensus Back     alignment and domain information
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated Back     alignment and domain information
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit Back     alignment and domain information
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14908 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0436|consensus Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
1bs2_A607 Yeast Arginyl-Trna Synthetase Length = 607 2e-21
2zue_A629 Crystal Structure Of Pyrococcus Horikoshii Arginyl- 1e-05
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase Length = 607 Back     alignment and structure 
Iteration: 1

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Query: 1   MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPD--HC 58
           +SA+++ +++ +R+ +Y F W+  L   GD G  LQY+H RL S+ +  + I      + 
Sbjct: 455 ISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINA 514
Query: 59  DPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE 118
           D  LL EP A  LI  + ++ +VL  A ++++ + VV YLF LT+ ++     L V G  
Sbjct: 515 DFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQT 574
Query: 119 YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
             ++  RL L+  AR VL  GM +LGL P+++M
Sbjct: 575 EELATARLALYGAARQVLYNGMRLLGLTPVERM 607
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna Synthetase Complexed With Trna(Arg) And An Atp Analog (Anp) Length = 629 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query151
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 3e-41
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 4e-27
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 1e-26
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 2e-10
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Length = 607 Back     alignment and structure
 Score =  143 bits (364), Expect = 3e-41
 Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 2/153 (1%)

Query: 1   MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPPD--HC 58
           +SA+++ +++ +R+ +Y F W+  L   GD G  LQY+H RL S+ +  + I      + 
Sbjct: 455 ISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINA 514

Query: 59  DPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTE 118
           D  LL EP A  LI  + ++ +VL  A ++++ + VV YLF LT+ ++     L V G  
Sbjct: 515 DFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQT 574

Query: 119 YHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM 151
             ++  RL L+  AR VL  GM +LGL P+++M
Sbjct: 575 EELATARLALYGAARQVLYNGMRLLGLTPVERM 607
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Length = 629 Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Length = 592 Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Length = 464 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query151
1f7u_A607 Arginyl-tRNA synthetase; RNA-protein complex, amin 100.0
2zue_A629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
3fnr_A464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 100.0
1iq0_A592 Arginyl-tRNA synthetase; riken structural genomics 100.0
4dlp_A536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 99.05
3h99_A560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 98.89
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 98.87
2x1l_A524 Methionyl-tRNA synthetase; nucleotide-binding, pro 98.67
2csx_A497 Methionyl-tRNA synthetase; ligase, riken structura 98.65
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 98.44
2d5b_A500 Methionyl-tRNA synthetase; rossmann fold, class 1A 98.07
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 97.86
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 97.42
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 96.98
2v0c_A878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 96.34
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 95.99
1ile_A821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 95.75
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 95.66
4arc_A880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 94.35
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 90.9
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 86.53
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 85.62
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
Probab=100.00  E-value=3e-41  Score=285.24  Aligned_cols=151  Identities=35%  Similarity=0.620  Sum_probs=139.0

Q ss_pred             CcchhHhHhhcCCCCCceeeHhHHhcccCCCHHHHHHHHHHHHHHHhhcCCCCCC--CCCCCCCCCCHHHHHHHHHHHHh
Q psy6239           1 MSALIVYNLKIRRLKSYNFNWDECLHMSGDGGVKLQYSHCRLVSLAQECNAIQPP--DHCDPKLLAEPVALQLILDIARF   78 (151)
Q Consensus         1 ~~ai~~~~L~~~~~~~~~fd~~~~~~~~~~~~~~lqya~aR~~sIlrk~~~~~~~--~~~d~~~l~~~~E~~L~~~l~~~   78 (151)
                      +|||||++|+..+.++++|||+.+++|+|+||+||||||+|+|||+||+......  ...+++.+.++.|++|++.|.+|
T Consensus       455 i~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~f  534 (607)
T 1f7u_A          455 ISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQY  534 (607)
T ss_dssp             HHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTH
T ss_pred             HHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999998320100  12345567899999999999999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239          79 DEVLYQAHESYDSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM  151 (151)
Q Consensus        79 ~~~l~~a~~~~~p~~l~~~l~~La~~f~~fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M  151 (151)
                      |+++.+++++++||.+|+||++||+.||+||++|+|++++++++.+||+|+.++++||++||.||||++|+||
T Consensus       535 p~vv~~a~~~~~P~~l~~Yl~~La~~fn~fY~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~perM  607 (607)
T 1f7u_A          535 PDVLRNAIKTHEPTTVVTYLFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPVERM  607 (607)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence            9999999999999999999999999999999999999988888999999999999999999999999999999
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 151
d1f7ua1124 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgR 1e-16
d1iq0a1126 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgR 7e-13
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124 Back     information, alignment and structure

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.3 bits (169), Expect = 1e-16
 Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 32  GVKLQYSHCRLVSLAQECNAIQPPD--HCDPKLLAEPVALQLILDIARFDEVLYQAHESY 89
           G  LQY+H RL S+ +  + I      + D  LL EP A  LI  + ++ +VL  A +++
Sbjct: 3   GPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTH 62

Query: 90  DSSIVVRYLFNLTNSINKALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLD 149
           + + VV YLF LT+ ++     L V G    ++  RL L+  AR VL  GM +LGL P++
Sbjct: 63  EPTTVVTYLFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPVE 122

Query: 150 KM 151
           +M
Sbjct: 123 RM 124
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 126 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query151
d1f7ua1124 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 100.0
d1iq0a1126 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 100.0
d1rqga1210 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 96.7
d1pfva1162 Methionyl-tRNA synthetase (MetRS) {Escherichia col 95.43
d2d5ba1152 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 90.08
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-42  Score=234.56  Aligned_cols=122  Identities=37%  Similarity=0.559  Sum_probs=113.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhcCCCCC--CCCCCCCCCCCHHHHHHHHHHHHhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q psy6239          30 DGGVKLQYSHCRLVSLAQECNAIQP--PDHCDPKLLAEPVALQLILDIARFDEVLYQAHESYDSSIVVRYLFNLTNSINK  107 (151)
Q Consensus        30 ~~~~~lqya~aR~~sIlrk~~~~~~--~~~~d~~~l~~~~E~~L~~~l~~~~~~l~~a~~~~~p~~l~~~l~~La~~f~~  107 (151)
                      ||||||||||||++||+||++..+.  ....|++.+.++.||.|++.+.+||+++++++++++||.+|+|+++||+.||+
T Consensus         1 nTgpYiqYa~aRi~SIlrk~~~~~~~~~~~~~~~~l~~~~e~~Li~~l~~~p~vl~~a~~~~~Ph~l~~yl~~La~~F~~   80 (124)
T d1f7ua1           1 DTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQVSS   80 (124)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccCCChhhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999865221  13467778899999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCCC
Q psy6239         108 ALKQLQVKGTEYHVSQHRLLLFNKARLVLNQGMCVLGLKPLDKM  151 (151)
Q Consensus       108 fy~~~~V~~~~~~~~~~RL~L~~~~~~vl~~~l~llgi~~~~~M  151 (151)
                      ||++|+|++++.+++.+||+|+.++++++++||++|||+|||+|
T Consensus        81 fY~~~~Il~~~~~~~~~RL~L~~~~~~vL~~gL~lLGI~~~e~M  124 (124)
T d1f7ua1          81 CYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPVERM  124 (124)
T ss_dssp             HHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCC
T ss_pred             HHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccC
Confidence            99999999999889999999999999999999999999999999
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure